Psyllid ID: psy11510

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MTFRFKLNIWDVGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQVLLNEVSN
Secondary Structure (PSIPRED)
cEEEEEEEEEEEcccccccccccccccccccccccccccEEEEEEcccccccEEEEccccEEEccEEEEEEEcccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHcccccccccEEEEEEccccccccccHHHHHHHHHHHHHccccccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEcccHHHHcccHHHHHHHHHHHHccccEEEEEEEcccccccEEEEEEEEEEEccEEEEEEEEcccHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHccHHHcccEEEEEEEcccccccccHHHHHHHcccHHHHccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
mtfrfklniwdvggqkslRSYSYYgmgmlrhrpqvsNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLniwdvggqkSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANkqdiegaltpedikNVSEKATKVKLNKQSKFQVLLNEVSN
Flexible Loop (DISEMBL)
mtfrfklniwdvggqkSLRSYSYYGMGMLRHRPQVSNVAVVSLLrnknggetlilkkkkmIMTFRFKlniwdvggqKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIegaltpedikNVSEKAtkvklnkqskfqvllnevsn
Low Complexity Region (SEG)
MTFRFKLNIWDVGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCArelhellqeerlAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQVLLNEVSN
Disordered region (IsUnstruct)
**FRFKLNIWDVGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA*********************************
Disordered Region (DISOPRED)
**FR*K*NIWDVGGQKSLRSYSYYGMGMLRH*PQVSNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQVLLNEVS*
Disordered Region (DISEMBL)
MTFRFKLNIWDVGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQVLLNEVSN
Disordered Region (DISPRO)
MTFRFKLNIWDVGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQVLLN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTFRFKLNIWDVGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKFQVLLNEVSN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
P36404	184	ADP-ribosylation factor-l	yes	N/A	0.491	0.456	0.785	8e-34
Q2TA37	184	ADP-ribosylation factor-l	yes	N/A	0.491	0.456	0.773	3e-33
O08697	184	ADP-ribosylation factor-l	yes	N/A	0.491	0.456	0.773	4e-33
Q9D0J4	184	ADP-ribosylation factor-l	yes	N/A	0.491	0.456	0.773	4e-33
Q9ZPX1	185	Probable ADP-ribosylation	yes	N/A	0.660	0.610	0.550	2e-32
Q06849	184	ADP-ribosylation factor-l	yes	N/A	0.479	0.445	0.743	1e-31
Q627K4	184	ADP-ribosylation factor-l	N/A	N/A	0.491	0.456	0.678	3e-28
Q19705	184	ADP-ribosylation factor-l	yes	N/A	0.479	0.445	0.682	3e-27
Q54UF1	184	ADP-ribosylation factor-l	yes	N/A	0.608	0.565	0.508	2e-24
Q1MTE5	182	ADP-ribosylation factor-l	no	N/A	0.608	0.571	0.466	3e-24

>sp|P36404|ARL2_HUMAN ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4

 Score =  142 bits (359), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 74/84 (88%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC REL  LL EERLAGAT
Sbjct: 60  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LL+FANKQD+ GAL+   I+ V E
Sbjct: 120 LLIFANKQDLPGALSSNAIREVLE 143

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.
Homo sapiens (taxid: 9606)

>sp|Q2TA37|ARL2_BOVIN ADP-ribosylation factor-like protein 2 OS=Bos taurus GN=ARL2 PE=1 SV=1

 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 73/84 (86%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC REL  LL EERLAGAT
Sbjct: 60  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LL+FANKQD+ GAL+   I+   E
Sbjct: 120 LLIFANKQDLPGALSSNAIREALE 143

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Bos taurus (taxid: 9913)

>sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2 OS=Rattus norvegicus GN=Arl2 PE=1 SV=1

 Score =  140 bits (353), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 73/84 (86%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC REL  LL EERLAGAT
Sbjct: 60  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LL+FANKQD+ GAL+   I+   E
Sbjct: 120 LLIFANKQDLPGALSCNAIQEALE 143

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Rattus norvegicus (taxid: 10116)

>sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2 OS=Mus musculus GN=Arl2 PE=1 SV=1

 Score =  140 bits (353), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/84 (77%), Positives = 73/84 (86%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC REL  LL EERLAGAT
Sbjct: 60  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LL+FANKQD+ GAL+   I+   E
Sbjct: 120 LLIFANKQDLPGALSCNAIQEALE 143

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). GTP-binding protein that does not act as an allosteric activator of the cholera toxin catalytic subunit. Regulates formation of new microtubules and centrosome integrity. Prevents the TBCD-induced microtubule destruction. Participates in association with TBCD, in the disassembly of the apical junction complexes. Antagonizes the effect of TBCD on epithelial cell detachment and tight and adherens junctions disassembly. Together with ARL2, plays a role in the nuclear translocation, retention and transcriptional activity of STAT3. Component of a regulated secretory pathway involved in Ca(2+)-dependent release of acetylcholine. Required for normal progress through the cell cycle.

Mus musculus (taxid: 10090)

>sp|Q9ZPX1|ARF5_ARATH Probable ADP-ribosylation factor At2g18390 OS=Arabidopsis thaliana GN=At2g18390 PE=2 SV=1

 Score =  138 bits (347), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 65/118 (55%), Positives = 87/118 (73%), Gaps = 5/118 (4%)

Query: 35  VSNVAVVSLLRNKNGGETLILKKK-----KMIMTFRFKLNIWDVGGQKSLRSYWRNYFES 89
           + N    +++   NG +T ++        K I+  ++ LNIWDVGGQK++RSYWRNYFE 
Sbjct: 24  LDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQ 83

Query: 90  TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV 147
           TDGL+WVVDS+D RRL+DC  EL  LL+EERLAG++LL+ ANKQDI+GALTP++I  V
Sbjct: 84  TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKV 141

GTP-binding protein that functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. Involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q06849|ARL2_DROME ADP-ribosylation factor-like protein 2 OS=Drosophila melanogaster GN=Arf84F PE=2 SV=2

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 70/82 (85%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           + LN+WDVGGQKSLRSYWRNYFESTDGL+WVVDSAD+ RLE C +EL  LLQEERLAGAT
Sbjct: 60  YTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNV 147
           LLV  NKQD+ GAL+  +IK +
Sbjct: 120 LLVLCNKQDLPGALSSNEIKEI 141

Does not act as an allosteric activator of the cholera toxin catalytic subunit.

Drosophila melanogaster (taxid: 7227)

>sp|Q627K4|ARL2_CAEBR ADP-ribosylation factor-like protein 2 OS=Caenorhabditis briggsae GN=evl-20.1 PE=3 SV=1

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 68/84 (80%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           F+LN+WDVGGQKSLRSYW+NYFESTD LIWVVDS+D+ RL  C+ EL +LLQEERL+GA+
Sbjct: 60  FQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLTQCSEELKKLLQEERLSGAS 119

Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LLV ANK D+ GA+    I  V E
Sbjct: 120 LLVLANKSDLPGAIDVNSIAQVLE 143

GTP-binding protein that functions in embryogenesis, cytokinesis, germline development and microtubulule cytoskeleton dynamics.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q19705|ARL2_CAEEL ADP-ribosylation factor-like protein 2 OS=Caenorhabditis elegans GN=evl-20 PE=2 SV=2

 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 66/82 (80%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           F+LN+WDVGGQKSLRSYW+NYFESTD LIWVVDS+D+ RL  C+ EL +LL EERLAGA+
Sbjct: 60  FQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGAS 119

Query: 126 LLVFANKQDIEGALTPEDIKNV 147
           LLV ANK D+ GA+    I  V
Sbjct: 120 LLVLANKSDLPGAIDVNSIAQV 141

GTP-binding protein that functions in embryogenesis, cytokinesis, germline development and microtubulule cytoskeleton dynamics.

Caenorhabditis elegans (taxid: 6239)

>sp|Q54UF1|ARL2_DICDI ADP-ribosylation factor-like protein 2 OS=Dictyostelium discoideum GN=arl2 PE=3 SV=1

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 83/120 (69%), Gaps = 16/120 (13%)

Query: 41  VSLLRNKNGGETLILKK----------------KKMIMTFRFKLNIWDVGGQKSLRSYWR 84
           + +L   N G+T ILKK                 + +M   +KLNIWD+GGQK+LRSYWR
Sbjct: 19  ILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWR 78

Query: 85  NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI 144
           NY+E  D +IWV+DS+D RR++DC  EL +LL+EE+ AGA+ LVFANKQD++GA+T E+I
Sbjct: 79  NYYEENDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEI 138

May be involved in trafficking events within the endosomal system.

Dictyostelium discoideum (taxid: 44689)

>sp|Q1MTE5|ARL3_DANRE ADP-ribosylation factor-like protein 3 OS=Danio rerio GN=arl3 PE=2 SV=1

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 56/120 (46%), Positives = 78/120 (65%), Gaps = 16/120 (13%)

Query: 41  VSLLRNKNGGETLILKK----------------KKMIMTFRFKLNIWDVGGQKSLRSYWR 84
           + LL   NGG+T +LK+                 K + +  FKLN+WD+GGQ+ +R YWR
Sbjct: 20  ILLLGLDNGGKTTLLKQLASEDITHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWR 79

Query: 85  NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI 144
           NYFE+TD LI+V+DSAD++R E+  +EL ELL EE+L+G  +LVFANKQD+  A    +I
Sbjct: 80  NYFENTDVLIYVIDSADRKRFEETGQELAELLDEEKLSGVPVLVFANKQDLLTAAPASEI 139

Small GTP-binding protein which cycles between an inactive GDP-bound and an active GTP-bound form, and the rate of cycling is regulated by guanine nucleotide exchange factors (GEF) and GTPase-activating proteins (GAP). Required for normal cytokinesis and cilia signaling. Required for targeting proteins to the ciliary membrane by releasing myristoylated protein from unc119 cargo adapters into the cilium.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
91087357	184	PREDICTED: similar to ADP-ribosylation f	0.479	0.445	0.829	2e-34
198431309	184	PREDICTED: similar to ADP-ribosylation f	0.479	0.445	0.841	2e-34
339283880	184	ADP-ribosylation factor-like protein 2 [	0.479	0.445	0.829	2e-34
242024264	184	conserved hypothetical protein [Pediculu	0.491	0.456	0.809	2e-34
193709314	184	PREDICTED: ADP-ribosylation factor-like	0.660	0.614	0.618	2e-34
291237670	184	PREDICTED: ADP-ribosylation factor-like	0.491	0.456	0.809	2e-33
156551615	184	PREDICTED: ADP-ribosylation factor-like	0.356	0.331	0.780	2e-33
321463538	184	hypothetical protein DAPPUDRAFT_129159 [	0.573	0.532	0.631	2e-33
449667445	184	PREDICTED: ADP-ribosylation factor-like	0.637	0.592	0.608	4e-33
340370476	184	PREDICTED: ADP-ribosylation factor-like	0.567	0.527	0.672	9e-33

>gi|91087357|ref|XP_975625.1| PREDICTED: similar to ADP-ribosylation factor-like protein 2 [Tribolium castaneum] gi|270010616|gb|EFA07064.1| hypothetical protein TcasGA2_TC010041 [Tribolium castaneum]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/82 (82%), Positives = 74/82 (90%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           F LN+WDVGGQKSLRSYWRNYFE TDGLIWVVDSADKRRLEDC  ELH LLQEERLAGAT
Sbjct: 60  FTLNLWDVGGQKSLRSYWRNYFECTDGLIWVVDSADKRRLEDCKAELHTLLQEERLAGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNV 147
           LLVFANKQD+ GA TPE+++ +
Sbjct: 120 LLVFANKQDLPGACTPEELREI 141

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198431309|ref|XP_002120798.1| PREDICTED: similar to ADP-ribosylation factor-like 2 [Ciona intestinalis]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/82 (84%), Positives = 75/82 (91%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRL DC +ELH LL EERLAGAT
Sbjct: 60  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLSDCVKELHHLLVEERLAGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNV 147
           LLVFANKQD+ G+L+ E+IK +
Sbjct: 120 LLVFANKQDLPGSLSSEEIKEI 141

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|339283880|gb|AEJ38209.1| ADP-ribosylation factor-like protein 2 [Laodelphax striatella]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/82 (82%), Positives = 76/82 (92%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           +KLN+WDVGGQKSLRSYWRNYFESTDGLIWVVD ADKRRL DC  ELH+LLQEERLAGAT
Sbjct: 60  YKLNVWDVGGQKSLRSYWRNYFESTDGLIWVVDGADKRRLHDCGDELHKLLQEERLAGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNV 147
           LLVFANKQD+ GAL+ E+I++V
Sbjct: 120 LLVFANKQDLPGALSAEEIRDV 141

Source: Laodelphax striatella

Species: Laodelphax striatella

Genus: Laodelphax

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242024264|ref|XP_002432548.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212518008|gb|EEB19810.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 74/84 (88%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           FKLNIWDVGGQKSLRSYWRNYFE TDGL+WV+DSADKRRLEDC  ELH LL EERLAGAT
Sbjct: 60  FKLNIWDVGGQKSLRSYWRNYFECTDGLVWVIDSADKRRLEDCKSELHHLLNEERLAGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LL+F NKQD+ GAL+ E IKN+ E
Sbjct: 120 LLIFCNKQDLPGALSSEKIKNILE 143

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193709314|ref|XP_001942897.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Acyrthosiphon pisum]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/118 (61%), Positives = 88/118 (74%), Gaps = 5/118 (4%)

Query: 35  VSNVAVVSLLRNKNGGETLILKKK-----KMIMTFRFKLNIWDVGGQKSLRSYWRNYFES 89
           + N    ++L+  NG  T  ++       K +    +KLN+WDVGGQKSLRSYWRNYFES
Sbjct: 24  LDNAGKTTILKKYNGEPTNTIEPTLGFNIKTLDHKSYKLNVWDVGGQKSLRSYWRNYFES 83

Query: 90  TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV 147
           TDGLIWVVDSADKRRL DC  ELH L++EERLAGATLL+FANKQD+ GAL+ E+IK V
Sbjct: 84  TDGLIWVVDSADKRRLSDCTTELHSLIEEERLAGATLLIFANKQDLPGALSSEEIKEV 141

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291237670|ref|XP_002738749.1| PREDICTED: ADP-ribosylation factor-like 2-like [Saccoglossus kowalevskii]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 75/84 (89%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           FKLN+WDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRL+DC +ELH LL EERLAGAT
Sbjct: 60  FKLNVWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLQDCKQELHSLLLEERLAGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LLVFANKQD+ G+L  E+I+   E
Sbjct: 120 LLVFANKQDLPGSLPSEEIRQALE 143

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|156551615|ref|XP_001600714.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Nasonia vitripennis]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/82 (78%), Positives = 75/82 (91%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           +KLN+WDVGGQKSLR+YW+NYFESTDGLIWVVDSAD+RRLEDC  E+H+LLQEERL GAT
Sbjct: 60  YKLNVWDVGGQKSLRTYWKNYFESTDGLIWVVDSADRRRLEDCKEEMHKLLQEERLEGAT 119

Query: 126 LLVFANKQDIEGALTPEDIKNV 147
           LL+FANKQD+ GA+T EDI  +
Sbjct: 120 LLIFANKQDLPGAVTTEDIAQI 141

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321463538|gb|EFX74553.1| hypothetical protein DAPPUDRAFT_129159 [Daphnia pulex]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 85/114 (74%), Gaps = 16/114 (14%)

Query: 48  NGGETLILKK----------------KKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T ILKK                 K +    ++LNIWDVGGQKSLRSYWRNYFESTD
Sbjct: 26  NAGKTTILKKFNGEDVHTISPTLGFNIKTLEHQNYQLNIWDVGGQKSLRSYWRNYFESTD 85

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK 145
           GL+WVVDS D+RR+EDC +ELH LLQEERLAGATLLVFANKQD+ G++T ++IK
Sbjct: 86  GLVWVVDSIDRRRMEDCTKELHSLLQEERLAGATLLVFANKQDLPGSMTADEIK 139

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449667445|ref|XP_002157516.2| PREDICTED: ADP-ribosylation factor-like protein 2-like [Hydra magnipapillata]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 90/125 (72%), Gaps = 16/125 (12%)

Query: 41  VSLLRNKNGGETLILKK----------------KKMIMTFRFKLNIWDVGGQKSLRSYWR 84
           + +L   N G+T ILKK                 K +   +FKLNIWDVGGQKSLRSYWR
Sbjct: 19  ILMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHNQFKLNIWDVGGQKSLRSYWR 78

Query: 85  NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI 144
           NYFESTDGL+WVVDSADK RL+DC +EL  LL EERL+GATLLVFANKQD++GALT ++I
Sbjct: 79  NYFESTDGLVWVVDSADKWRLDDCKKELKTLLAEERLSGATLLVFANKQDLDGALTSDEI 138

Query: 145 KNVSE 149
           K + E
Sbjct: 139 KEILE 143

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|340370476|ref|XP_003383772.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Amphimedon queenslandica]

 Score =  144 bits (364), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 83/113 (73%), Gaps = 16/113 (14%)

Query: 48  NGGETLILKK------KKMIMTFRF----------KLNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T ILKK        +  TF F          KLNIWDVGGQKSLRSYWRNYFESTD
Sbjct: 26  NAGKTTILKKFIGEDITTISPTFGFNIKTVEHKGLKLNIWDVGGQKSLRSYWRNYFESTD 85

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI 144
           GLIWVVDSAD RRLEDC +ELH LL+EERLA ATLLVFANKQD+ GAL+  +I
Sbjct: 86  GLIWVVDSADSRRLEDCKKELHSLLKEERLASATLLVFANKQDLPGALSGVEI 138

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
UNIPROTKB|P36404	184	ARL2 "ADP-ribosylation factor-	0.491	0.456	0.678	5.7e-27
UNIPROTKB|F1RQS8	184	LOC100515705 "Uncharacterized	0.491	0.456	0.666	1.2e-26
UNIPROTKB|Q2TA37	184	ARL2 "ADP-ribosylation factor-	0.491	0.456	0.666	1.9e-26
ZFIN|ZDB-GENE-041010-19	184	arl2 "ADP-ribosylation factor-	0.479	0.445	0.682	2.5e-26
MGI|MGI:1928393	184	Arl2 "ADP-ribosylation factor-	0.491	0.456	0.666	3.2e-26
RGD|69326	184	Arl2 "ADP-ribosylation factor-	0.491	0.456	0.666	3.2e-26
UNIPROTKB|O08697	184	Arl2 "ADP-ribosylation factor-	0.491	0.456	0.666	3.2e-26
TAIR|locus:2062085	185	TTN5 "TITAN 5" [Arabidopsis th	0.660	0.610	0.483	5.2e-26
FB|FBgn0004908	184	Arl2 "ADP ribosylation factor-	0.479	0.445	0.634	1.2e-24
DICTYBASE|DDB_G0281307	184	arl2 "ARF-like protein" [Dicty	0.643	0.597	0.443	1.4e-23

UNIPROTKB|P36404 ARL2 "ADP-ribosylation factor-like protein 2" [Homo sapiens (taxid:9606)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 57/84 (67%), Positives = 65/84 (77%)

Query:    66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
             FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC             AGAT
Sbjct:    60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119

Query:   126 LLVFANKQDIEGALTPEDIKNVSE 149
             LL+FANKQD+ GAL+   I+ V E
Sbjct:   120 LLIFANKQDLPGALSSNAIREVLE 143

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IDA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0051457 "maintenance of protein location in nucleus" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0003924 "GTPase activity" evidence=IMP

GO:0005525 "GTP binding" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0031113 "regulation of microtubule polymerization" evidence=IMP

GO:0051297 "centrosome organization" evidence=IMP

GO:0016328 "lateral plasma membrane" evidence=ISS

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=ISS

GO:0070830 "tight junction assembly" evidence=ISS

GO:0005095 "GTPase inhibitor activity" evidence=TAS

GO:0007021 "tubulin complex assembly" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IMP

UNIPROTKB|F1RQS8 LOC100515705 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 56/84 (66%), Positives = 65/84 (77%)

Query:    66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
             FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC             AGAT
Sbjct:    60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119

Query:   126 LLVFANKQDIEGALTPEDIKNVSE 149
             LL+FANKQD+ GAL+ + I+   E
Sbjct:   120 LLIFANKQDLPGALSSKAIREALE 143

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA

GO:0051297 "centrosome organization" evidence=IEA

GO:0034260 "negative regulation of GTPase activity" evidence=IEA

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q2TA37 ARL2 "ADP-ribosylation factor-like protein 2" [Bos taurus (taxid:9913)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 56/84 (66%), Positives = 64/84 (76%)

Query:    66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
             FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC             AGAT
Sbjct:    60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGAT 119

Query:   126 LLVFANKQDIEGALTPEDIKNVSE 149
             LL+FANKQD+ GAL+   I+   E
Sbjct:   120 LLIFANKQDLPGALSSNAIREALE 143

GO:0005634 "nucleus" evidence=ISS

GO:0051457 "maintenance of protein location in nucleus" evidence=ISS

GO:0005813 "centrosome" evidence=ISS

GO:0051297 "centrosome organization" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0034260 "negative regulation of GTPase activity" evidence=ISS

GO:0034333 "adherens junction assembly" evidence=IDA

GO:0070830 "tight junction assembly" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0031116 "positive regulation of microtubule polymerization" evidence=IDA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

ZFIN|ZDB-GENE-041010-19 arl2 "ADP-ribosylation factor-like 2" [Danio rerio (taxid:7955)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 56/82 (68%), Positives = 63/82 (76%)

Query:    66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
             FKLNIWDVGGQK LRSYWRNYFESTDGL+WVVDSAD+ RL+DC             AGAT
Sbjct:    60 FKLNIWDVGGQKPLRSYWRNYFESTDGLVWVVDSADRLRLDDCRKELNALLLEERLAGAT 119

Query:   126 LLVFANKQDIEGALTPEDIKNV 147
             LLVFANKQD+ GAL+ + I+ V
Sbjct:   120 LLVFANKQDLPGALSKDGIREV 141

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1928393 Arl2 "ADP-ribosylation factor-like 2" [Mus musculus (taxid:10090)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 56/84 (66%), Positives = 64/84 (76%)

Query:    66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
             FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC             AGAT
Sbjct:    60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119

Query:   126 LLVFANKQDIEGALTPEDIKNVSE 149
             LL+FANKQD+ GAL+   I+   E
Sbjct:   120 LLIFANKQDLPGALSCNAIQEALE 143

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015870 "acetylcholine transport" evidence=ISO

GO:0019003 "GDP binding" evidence=IDA

GO:0031113 "regulation of microtubule polymerization" evidence=ISO

GO:0031116 "positive regulation of microtubule polymerization" evidence=ISO

GO:0034260 "negative regulation of GTPase activity" evidence=ISO

GO:0051297 "centrosome organization" evidence=ISO

GO:0051457 "maintenance of protein location in nucleus" evidence=ISO

RGD|69326 Arl2 "ADP-ribosylation factor-like 2" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 56/84 (66%), Positives = 64/84 (76%)

Query:    66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
             FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC             AGAT
Sbjct:    60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119

Query:   126 LLVFANKQDIEGALTPEDIKNVSE 149
             LL+FANKQD+ GAL+   I+   E
Sbjct:   120 LLIFANKQDLPGALSCNAIQEALE 143

GO:0003924 "GTPase activity" evidence=IEA;ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IEA;ISO;IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005813 "centrosome" evidence=IEA;ISO;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO;ISS

GO:0007049 "cell cycle" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0010811 "positive regulation of cell-substrate adhesion" evidence=ISS

GO:0015870 "acetylcholine transport" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=ISS

GO:0019003 "GDP binding" evidence=IEA;ISO

GO:0031113 "regulation of microtubule polymerization" evidence=ISO;ISS

GO:0031116 "positive regulation of microtubule polymerization" evidence=IEA;ISO;ISS

GO:0034260 "negative regulation of GTPase activity" evidence=IEA;ISO;ISS

GO:0051297 "centrosome organization" evidence=IEA;ISO;ISS

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA;ISO;ISS

GO:0070830 "tight junction assembly" evidence=ISS

UNIPROTKB|O08697 Arl2 "ADP-ribosylation factor-like protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 56/84 (66%), Positives = 64/84 (76%)

Query:    66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
             FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC             AGAT
Sbjct:    60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119

Query:   126 LLVFANKQDIEGALTPEDIKNVSE 149
             LL+FANKQD+ GAL+   I+   E
Sbjct:   120 LLIFANKQDLPGALSCNAIQEALE 143

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

TAIR|locus:2062085 TTN5 "TITAN 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 57/118 (48%), Positives = 78/118 (66%)

Query:    35 VSNVAVVSLLRNKNGGETLILKKK-----KMIMTFRFKLNIWDVGGQKSLRSYWRNYFES 89
             + N    +++   NG +T ++        K I+  ++ LNIWDVGGQK++RSYWRNYFE 
Sbjct:    24 LDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQKYTLNIWDVGGQKTIRSYWRNYFEQ 83

Query:    90 TDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVFANKQDIEGALTPEDIKNV 147
             TDGL+WVVDS+D RRL+DC             AG++LL+ ANKQDI+GALTP++I  V
Sbjct:    84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSSLLILANKQDIQGALTPDEIGKV 141

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0009630 "gravitropism" evidence=NAS

GO:0003924 "GTPase activity" evidence=ISS

GO:0009558 "embryo sac cellularization" evidence=IMP

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0009960 "endosperm development" evidence=IMP

GO:0000226 "microtubule cytoskeleton organization" evidence=TAS

GO:0007021 "tubulin complex assembly" evidence=ISS

FB|FBgn0004908 Arl2 "ADP ribosylation factor-like 2" [Drosophila melanogaster (taxid:7227)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 52/82 (63%), Positives = 60/82 (73%)

Query:    66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
             + LN+WDVGGQKSLRSYWRNYFESTDGL+WVVDSAD+ RLE C             AGAT
Sbjct:    60 YTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGAT 119

Query:   126 LLVFANKQDIEGALTPEDIKNV 147
             LLV  NKQD+ GAL+  +IK +
Sbjct:   120 LLVLCNKQDLPGALSSNEIKEI 141

GO:0006471 "protein ADP-ribosylation" evidence=ISS;NAS

GO:0005525 "GTP binding" evidence=ISS;NAS

GO:0016197 "endosomal transport" evidence=TAS

GO:0048488 "synaptic vesicle endocytosis" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0005622 "intracellular" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

DICTYBASE|DDB_G0281307 arl2 "ARF-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 51/115 (44%), Positives = 73/115 (63%)

Query:    35 VSNVAVVSLLRNKNGGETLILKKK-----KMIMTFRFKLNIWDVGGQKSLRSYWRNYFES 89
             + N    ++L+  NG +   +        + +M   +KLNIWD+GGQK+LRSYWRNY+E 
Sbjct:    24 LDNAGKTTILKKFNGEDISTISPTLGFNIQTLMYKEYKLNIWDIGGQKTLRSYWRNYYEE 83

Query:    90 TDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVFANKQDIEGALTPEDI 144
              D +IWV+DS+D RR++DC             AGA+ LVFANKQD++GA+T E+I
Sbjct:    84 NDAVIWVIDSSDIRRIDDCKFELKKLLEEEKFAGASFLVFANKQDLDGAMTSEEI 138

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2TA37	ARL2_BOVIN	No assigned EC number	0.7738	0.4912	0.4565	yes	N/A
Q06849	ARL2_DROME	No assigned EC number	0.7439	0.4795	0.4456	yes	N/A
Q9ZPX1	ARF5_ARATH	No assigned EC number	0.5508	0.6608	0.6108	yes	N/A
O08697	ARL2_RAT	No assigned EC number	0.7738	0.4912	0.4565	yes	N/A
Q54UF1	ARL2_DICDI	No assigned EC number	0.5083	0.6081	0.5652	yes	N/A
P36404	ARL2_HUMAN	No assigned EC number	0.7857	0.4912	0.4565	yes	N/A
P38116	ARL1_YEAST	No assigned EC number	0.5569	0.4502	0.4207	yes	N/A
Q09767	ARL_SCHPO	No assigned EC number	0.4275	0.7134	0.6559	yes	N/A
B5FYQ0	ARL3_TAEGU	No assigned EC number	0.5465	0.5029	0.4725	yes	N/A
Q9D0J4	ARL2_MOUSE	No assigned EC number	0.7738	0.4912	0.4565	yes	N/A
Q19705	ARL2_CAEEL	No assigned EC number	0.6829	0.4795	0.4456	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	171
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	9e-56
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	7e-42
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	9e-39
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	1e-37
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	1e-31
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	3e-29
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	5e-29
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	3e-28
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	6e-28
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	1e-26
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	3e-26
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-24
cd04161	167	cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A	8e-24
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	2e-23
cd04162	164	cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp	5e-22
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-20
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-19
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	1e-19
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	3e-19
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	3e-17
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	5e-15
smart00178	184	smart00178, SAR, Sar1p-like members of the Ras-fam	6e-14
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-10
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-08
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	2e-06
pfam09439	181	pfam09439, SRPRB, Signal recognition particle rece	4e-06
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	8e-06
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-05
pfam00503	329	pfam00503, G-alpha, G-protein alpha subunit	4e-05
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	8e-05
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	8e-05
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	1e-04
smart00275	342	smart00275, G_alpha, G protein alpha subunit	1e-04
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	4e-04
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	6e-04
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	6e-04
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	8e-04
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	0.001
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	0.001
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	0.002
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	0.002
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	0.003
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	0.004
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	0.004
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	0.004

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score =  172 bits (439), Expect = 9e-56
 Identities = 75/118 (63%), Positives = 86/118 (72%), Gaps = 16/118 (13%)

Query: 48  NGGETLILKK----------------KKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T ILKK                 K +    +KLNIWDVGGQKSLRSYWRNYFESTD
Sbjct: 24  NAGKTTILKKFNGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLRSYWRNYFESTD 83

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSE 149
            LIWVVDS+D+ RLEDC REL +LL EERLAGATLL+FANKQD+ GAL+PE+I+ V E
Sbjct: 84  ALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALSPEEIREVLE 141

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score =  137 bits (348), Expect = 7e-42
 Identities = 56/115 (48%), Positives = 71/115 (61%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKK------MIMTFRF----------KLNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T IL K K       I T  F          K  +WDVGGQ+SLR  WRNYF +TD
Sbjct: 24  NAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKFTVWDVGGQESLRPLWRNYFPNTD 83

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
            +I+VVDSAD+ R+E+   ELH LL EE LA A LL+ ANKQD+ GA++  +I+ 
Sbjct: 84  AVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRE 138

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score =  129 bits (326), Expect = 9e-39
 Identities = 44/81 (54%), Positives = 60/81 (74%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
            K  +WDVGGQ  +R  W++Y+E+TDGLI+VVDS+D+ R+E+   ELH+LL EE L GA 
Sbjct: 43  VKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAP 102

Query: 126 LLVFANKQDIEGALTPEDIKN 146
           LL+ ANKQD+ GALT  ++  
Sbjct: 103 LLILANKQDLPGALTESELIE 123

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score =  127 bits (320), Expect = 1e-37
 Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 16/134 (11%)

Query: 27  GMLRHRPQVSNVAVVSLLRNKNGGETLILKKK----------------KMIMTFRFKLNI 70
            + + +P       + LL   N G+T ILK+                 K +    FKLN+
Sbjct: 4   ILRKLKPSSRQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNV 63

Query: 71  WDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFA 130
           WD+GGQ+ +R YWRNYFE+TD LI+V+DSAD++R E+  +EL ELL+EE+LAG  +LVFA
Sbjct: 64  WDIGGQRKIRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFA 123

Query: 131 NKQDIEGALTPEDI 144
           NKQD+  A   E++
Sbjct: 124 NKQDLLTAAPAEEV 137

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score =  110 bits (278), Expect = 1e-31
 Identities = 42/78 (53%), Positives = 56/78 (71%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
           K  +WD+GGQ S+R YWR Y+ +TD +I+VVDS D+ RL     ELH +L+EE L  A L
Sbjct: 44  KFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVL 103

Query: 127 LVFANKQDIEGALTPEDI 144
           LVFANKQD+ GAL+  ++
Sbjct: 104 LVFANKQDMPGALSEAEV 121

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score =  105 bits (263), Expect = 3e-29
 Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 7/96 (7%)

Query: 51  ETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAR 110
           E L L+K          L +WDVGGQ+ +R+ W+ Y E+TDGL++VVDS+D+ RL++  +
Sbjct: 36  EMLQLEKH-------LSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQK 88

Query: 111 ELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
           EL  +L+ E + G  +++ ANKQD+ GALT E+I  
Sbjct: 89  ELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITR 124

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score =  104 bits (261), Expect = 5e-29
 Identities = 46/111 (41%), Positives = 64/111 (57%), Gaps = 16/111 (14%)

Query: 50  GETLILKKKKM------IMTFRF----------KLNIWDVGGQKSLRSYWRNYFESTDGL 93
           G+T IL K K+      I T  F             +WDVGGQ  +R  WR+YF++T GL
Sbjct: 12  GKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 71

Query: 94  IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI 144
           I+VVDS D+ R+ +   EL  +L E+ L  A LLVFANKQD+  A++  ++
Sbjct: 72  IFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEV 122

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score =  102 bits (256), Expect = 3e-28
 Identities = 48/113 (42%), Positives = 67/113 (59%), Gaps = 16/113 (14%)

Query: 48  NGGETLILKKKKM------IMTFRF----------KLNIWDVGGQKSLRSYWRNYFESTD 91
             G+T IL K K+      I T  F          K N+WDVGGQ  +R  WR+Y+  T 
Sbjct: 19  AAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ 78

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI 144
           GLI+VVDSAD+ R+++  +ELH ++ +  +  A LLVFANKQD+  A+ P +I
Sbjct: 79  GLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEI 131

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score =  102 bits (255), Expect = 6e-28
 Identities = 39/75 (52%), Positives = 54/75 (72%)

Query: 70  IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF 129
           +WD+GGQ+SLRS W  Y+ +TD +I V+DS D+ RL     EL+++L  E L  A LLV 
Sbjct: 63  MWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVL 122

Query: 130 ANKQDIEGALTPEDI 144
           ANKQD++GA+TP +I
Sbjct: 123 ANKQDLKGAMTPAEI 137

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 98.6 bits (246), Expect = 1e-26
 Identities = 34/86 (39%), Positives = 51/86 (59%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
           +L  WD+GGQ+ LRS W  Y+  + G+I+V+DS D+ R  +      +++  E L G  L
Sbjct: 52  RLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPL 111

Query: 127 LVFANKQDIEGALTPEDIKNVSEKAT 152
           LV ANKQD+  AL+  +IK V +   
Sbjct: 112 LVLANKQDLPDALSVAEIKEVFDDCI 137

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 98.0 bits (244), Expect = 3e-26
 Identities = 51/117 (43%), Positives = 69/117 (58%), Gaps = 19/117 (16%)

Query: 50  GETLILKKKKM------IMTFRF----------KLNIWDVGGQKSLRSYWRNYFESTDGL 93
           G+T IL K K+      I T  F          K  +WDVGGQ  LR  WR+Y+++T+GL
Sbjct: 29  GKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGL 88

Query: 94  IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEK 150
           I+VVDS D+ R+ D   EL  +L E+ L  A LLVFANKQD+  A++  +   V+EK
Sbjct: 89  IFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTE---VTEK 142

Length = 182

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 92.3 bits (229), Expect = 3e-24
 Identities = 37/78 (47%), Positives = 53/78 (67%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
              +WDVGGQ  +R  WR+Y+ +T GLI+VVDS D+ R+++   ELH +L E+ L  A +
Sbjct: 58  SFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVI 117

Query: 127 LVFANKQDIEGALTPEDI 144
           LVFANKQD+  A+   +I
Sbjct: 118 LVFANKQDLPDAMKAAEI 135

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13

 Score = 91.3 bits (227), Expect = 8e-24
 Identities = 33/80 (41%), Positives = 52/80 (65%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           ++++ I+D+GG  + R  W NY+    GL++VVDS+D  R+++    L ELLQ  R++G 
Sbjct: 42  KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGK 101

Query: 125 TLLVFANKQDIEGALTPEDI 144
            +LV ANKQD + AL   D+
Sbjct: 102 PILVLANKQDKKNALLGADV 121

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 90.8 bits (225), Expect = 2e-23
 Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 16/111 (14%)

Query: 50  GETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTDGL 93
           G+T IL K K+             + T  +K     +WDVGGQ  +R  WR+YF++T GL
Sbjct: 29  GKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88

Query: 94  IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI 144
           I+VVDS D+ R+ +   ELH +L E+ L  A LLVFANKQD+  A+   +I
Sbjct: 89  IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI 139

Length = 181

>gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase

 Score = 86.3 bits (214), Expect = 5e-22
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 59  KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQE 118
             I T    + + ++GG ++LR YW+ Y   + GLI+VVDSAD  RL    +ELH+LLQ 
Sbjct: 37  VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH 96

Query: 119 ERLAGATLLVFANKQDIEGALTPEDIK 145
                  L+V ANKQD+  A + ++I 
Sbjct: 97  P--PDLPLVVLANKQDLPAARSVQEIH 121

Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 82.0 bits (203), Expect = 2e-20
 Identities = 32/77 (41%), Positives = 50/77 (64%)

Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL 127
           + +WD+GGQ   RS W  Y    + +++VVD+AD+ +LE    ELH+LL++  L G  LL
Sbjct: 46  IKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLL 105

Query: 128 VFANKQDIEGALTPEDI 144
           V  NK D+ GAL+ +++
Sbjct: 106 VLGNKNDLPGALSVDEL 122

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 80.8 bits (199), Expect = 1e-19
 Identities = 35/79 (44%), Positives = 55/79 (69%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
            K  IWDVGG+  LR  W++Y+ +T  +++V+DS+ + R+ +   EL +LL E+ L  A 
Sbjct: 43  LKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDAL 102

Query: 126 LLVFANKQDIEGALTPEDI 144
           LL+FANKQD+ GAL+ E++
Sbjct: 103 LLIFANKQDVAGALSVEEM 121

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 80.8 bits (200), Expect = 1e-19
 Identities = 29/79 (36%), Positives = 49/79 (62%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
           K   +D+GG +  R  W++YF   DG++++VD+AD  R ++   EL  LL +E LA   +
Sbjct: 64  KFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPI 123

Query: 127 LVFANKQDIEGALTPEDIK 145
           L+  NK D  GA++ E+++
Sbjct: 124 LILGNKIDKPGAVSEEELR 142

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 79.8 bits (197), Expect = 3e-19
 Identities = 36/86 (41%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 62  MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERL 121
           +TF F    WDVGGQ+ LR  W++Y   TDG+++VVDS D  R+E+   ELH++ +    
Sbjct: 52  VTFHF----WDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSEN 107

Query: 122 AGATLLVFANKQDIEGALTPEDIKNV 147
            G  +LV ANKQD+  AL   +++ +
Sbjct: 108 QGVPVLVLANKQDLPNALPVSEVEKL 133

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 74.0 bits (182), Expect = 3e-17
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)

Query: 63  TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA 122
                   +D+ GQ   R  W +Y+++  G+I+V+DS+D+ R+     EL  LL    + 
Sbjct: 42  KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIK 101

Query: 123 GATL--LVFANKQDIEGALTPEDI 144
              +  L +ANK D+  ALT   I
Sbjct: 102 HRRIPILFYANKMDLPDALTAVKI 125

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 69.2 bits (169), Expect = 5e-15
 Identities = 23/90 (25%), Positives = 36/90 (40%)

Query: 49  GGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC 108
               L   K         KL +WD  GQ+  RS    Y+   +G++ V DS  +   ++ 
Sbjct: 37  TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDEL 96

Query: 109 ARELHELLQEERLAGATLLVFANKQDIEGA 138
             E  E L+E       +L+  NK D+   
Sbjct: 97  TEEWLEELRELAPDDVPILLVGNKIDLFDE 126

Length = 219

>gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases

 Score = 65.7 bits (160), Expect = 6e-14
 Identities = 27/79 (34%), Positives = 46/79 (58%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
           K   +D+GG +  R  W++YF   +G++++VD+ DK R  +  REL  LL +E LA    
Sbjct: 62  KFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPF 121

Query: 127 LVFANKQDIEGALTPEDIK 145
           L+  NK D   A + ++++
Sbjct: 122 LILGNKIDAPYAASEDELR 140

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 55.9 bits (135), Expect = 3e-10
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
             ++++   GQ+  +  W        G I +VDS+        A E+ + L         
Sbjct: 68  TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFH--AEEIIDFLTSR--NPIP 123

Query: 126 LLVFANKQDIEGALTPEDIKNVSEKATK 153
           ++V  NKQD+  AL PE I+   +    
Sbjct: 124 VVVAINKQDLFDALPPEKIREALKLELL 151

Length = 187

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 11/121 (9%)

Query: 36  SNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQ-----KSLRSYWRNYFEST 90
             V  VS   +  G         K +   + KL + D  G             R      
Sbjct: 20  GEVGEVS---DVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGA 76

Query: 91  DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEK 150
           D ++ VVDS D+   ED    +   L++E   G  +++  NK D+      E++  + E 
Sbjct: 77  DLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKIDLLEEREVEELLRLEEL 133

Query: 151 A 151
           A
Sbjct: 134 A 134

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 66  FKLNIWDVGGQKSLRS-YWRNYFESTDGLIWVVDSAD-KRRLEDCARELHELLQEERL-- 121
            KL + DV G + LR         S   +++VVDSA  ++ + D A  L+++L +     
Sbjct: 47  KKLTLVDVPGHEKLRDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIK 106

Query: 122 AGATLLVFANKQDIEGALTPEDIKNVSEK 150
               +L+  NKQD+  A   + IK + EK
Sbjct: 107 NKIPILIACNKQDLFTAKPAKKIKELLEK 135

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 6/91 (6%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTD---GLIWVVDS-ADKRRLEDCARELHELLQEERL 121
           F   + D  G   LR       + +    G+++VVDS A  + + D A  L+E+L    L
Sbjct: 49  FSFTLIDFPGHVKLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITEL 108

Query: 122 A--GATLLVFANKQDIEGALTPEDIKNVSEK 150
              G  +L+  NKQ+   A  P+ IK   EK
Sbjct: 109 LKNGIDILIACNKQESFTARPPKKIKQALEK 139

The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 16/17 (94%), Positives = 17/17 (100%)

Query: 5  FKLNIWDVGGQKSLRSY 21
          +KLNIWDVGGQKSLRSY
Sbjct: 58 YKLNIWDVGGQKSLRSY 74

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQE---ERLA 122
           +K N+ D  GQ+   +  R Y+ + +  + V D      + D    L +  +E      +
Sbjct: 51  YKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIV--ILVLDVEEILEKQTKEIIHHAES 108

Query: 123 GATLLVFANKQDIEGALTPEDIK 145
           G  +++  NK D+  A     + 
Sbjct: 109 GVPIILVGNKIDLRDAKLKTHVA 131

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit

 Score = 42.2 bits (100), Expect = 4e-05
 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 13/87 (14%)

Query: 62  MTFRFKLNIW---DVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDC 108
             F FK   +   DVGGQ+S R  W + FE    +I+VV  ++            RLE+ 
Sbjct: 161 TKFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEES 220

Query: 109 ARELHELLQEERLAGATLLVFANKQDI 135
                E+          +++F NK+D+
Sbjct: 221 LNLFEEICNSPWFKNTPIILFLNKKDL 247

G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
           KL IWD  GQ+S RS  R+Y+    G + V D   +         L +  Q    +  T+
Sbjct: 54  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSN-SNMTI 112

Query: 127 LVFANKQDIE 136
           ++  NK D+E
Sbjct: 113 MLIGNKCDLE 122

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 41.1 bits (96), Expect = 8e-05
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
           KL IWD  GQ+S RS  R+Y+    G + V D   +      A  L +  Q    A  T+
Sbjct: 56  KLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN-ANMTI 114

Query: 127 LVFANKQDI 135
           ++  NK D+
Sbjct: 115 MLIGNKCDL 123

Length = 210

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 51  ETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAR 110
           +T+ L+ KK+      +L IWD  GQ+   S    Y+ S  G+I V D   K   +D  +
Sbjct: 40  KTVELRGKKI------RLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK 93

Query: 111 ELHELLQEERLAGATLLVFANKQDIE 136
            + +++ +     A LL+  NK D E
Sbjct: 94  WM-KMIDKYASEDAELLLVGNKLDCE 118

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|214595 smart00275, G_alpha, G protein alpha subunit

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 30/126 (23%)

Query: 45  RNKNGG--ETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA-- 100
           R    G  ET  + KK   + FR     +DVGGQ+S R  W + F++   +I+ V  +  
Sbjct: 168 RVPTTGIQETAFIVKK---LFFRM----FDVGGQRSERKKWIHCFDNVTAIIFCVALSEY 220

Query: 101 DKRRLED-CARELHELLQ------EER-LAGATLLVFANKQDIEGALTPEDIKNVSEKAT 152
           D+   ED     + E L         R  A  ++++F NK D+             EK  
Sbjct: 221 DQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLF-----------EEKIK 269

Query: 153 KVKLNK 158
           KV L  
Sbjct: 270 KVPLVD 275

Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           R KL IWD  GQ+  R+  ++Y+ S +G I   D   +   E     + E+   E+   +
Sbjct: 51  RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEV---EKYGAS 107

Query: 125 T--LLVFANKQDIE 136
              LL+  NK D+E
Sbjct: 108 NVVLLLIGNKCDLE 121

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 2/22 (9%)

Query: 5  FKLNIWDVGGQKSLRSY--SYY 24
          FKLN+WD+GGQ+ +R Y  +Y+
Sbjct: 59 FKLNVWDIGGQRKIRPYWRNYF 80

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 18/51 (35%), Positives = 25/51 (49%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHEL 115
           R KL IWD  GQ+  R+    Y+  T G+I V D  +     +  R L E+
Sbjct: 54  RVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI 104

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT- 125
           KL IWD  GQ+  R+   +Y+    G+I V D  D+    +  + L E+   +R A    
Sbjct: 52  KLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEI---DRYASENV 108

Query: 126 --LLVFANKQDI--EGALTPEDIKNVSE 149
             LLV  NK D+  +  +   + K  ++
Sbjct: 109 NKLLV-GNKCDLTDKKVVDYTEAKEFAD 135

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 37.8 bits (89), Expect = 8e-04
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           + KL IWD  GQ+  RS   +Y+    G I V D  ++   E+   +    L+E      
Sbjct: 48  KVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENL-DKWLNELKEYAPPNI 106

Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
            +++  NK D+E    ++ E+ +  +++
Sbjct: 107 PIILVGNKSDLEDERQVSTEEAQQFAKE 134

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 37.2 bits (87), Expect = 0.001
 Identities = 10/22 (45%), Positives = 12/22 (54%), Gaps = 2/22 (9%)

Query: 5  FKLNIWDVGGQKSLRSY--SYY 24
           K  +WDVGGQ  +R     YY
Sbjct: 43 VKFTVWDVGGQDKIRPLWKHYY 64

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERL 121
           R KL +WD  GQ+  RS  R+Y+ ++ G++ V D  ++   E     +H+ L+E R 
Sbjct: 51  RIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFE----HVHDWLEEARS 103

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 36.8 bits (86), Expect = 0.002
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)

Query: 5  FKLNIWDVGGQKSLRSY--SYY 24
           K  +WDVGGQ+SLR    +Y+
Sbjct: 58 VKFTVWDVGGQESLRPLWRNYF 79

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
           F L +WD  GQ+  +     Y+     +I V D  D   LE   + L + L+E   +   
Sbjct: 49  FSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVL 108

Query: 126 LLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSKF 162
           L +   K+D+    +P     + + A K+    ++++
Sbjct: 109 LFLVGTKKDL---SSPAQYALMEQDAIKLAREMKAEY 142

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
           KL IWD  GQ+  RS  R+Y+    G + V D   +         L +      LA   +
Sbjct: 50  KLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDA---RTLASPDI 106

Query: 127 LVF--ANKQDIE 136
           ++    NK+D+E
Sbjct: 107 VIILVGNKKDLE 118

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 35.9 bits (84), Expect = 0.004
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 1/72 (1%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           R KL IWD  GQ+  RS   +Y+    G + V D  ++   E+    L E L+E      
Sbjct: 48  RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKE-LREYASPNV 106

Query: 125 TLLVFANKQDIE 136
            +++  NK D+E
Sbjct: 107 VIMLVGNKSDLE 118

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 11/113 (9%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
           K  IWD  GQ+  R+    Y+    G + V D   ++  ++  R L E L++   +   +
Sbjct: 62  KAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRE-LRDHADSNIVI 120

Query: 127 LVFANKQDIEG--ALTPEDIKNVSEK--------ATKVKLNKQSKFQVLLNEV 169
           ++  NK D+    ++  ED + ++EK        +     N +  FQ +L E+
Sbjct: 121 MMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI 173

Length = 216

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 35.6 bits (82), Expect = 0.004
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQE 118
           + KL IWD  GQ+  RS  ++Y+ S + LI   D       E+  R L E L+E
Sbjct: 55  KIKLQIWDTAGQERFRSITQSYYRSANALILTYDIT----CEESFRCLPEWLRE 104

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
KOG0084|consensus	205		100.0
KOG0092|consensus	200		100.0
KOG0098|consensus	216		100.0
KOG0078|consensus	207		100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.97
KOG0094|consensus	221		99.97
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.97
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.97
KOG0080|consensus	209		99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.97
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.97
KOG0095|consensus	213		99.97
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.97
KOG0087|consensus	222		99.97
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.97
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.97
PTZ00133	182	ADP-ribosylation factor; Provisional	99.97
KOG0093|consensus	193		99.97
KOG0079|consensus	198		99.97
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.97
KOG0394|consensus	210		99.96
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.96
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.96
KOG0070|consensus	181		99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.96
KOG0073|consensus	185		99.96
PTZ00369	189	Ras-like protein; Provisional	99.96
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.96
KOG0086|consensus	214		99.96
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.96
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.96
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.96
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.96
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.96
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.96
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.96
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.96
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.96
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.96
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.96
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.96
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.96
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.96
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.96
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.96
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.96
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.96
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.96
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.96
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.96
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.96
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.96
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.95
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.95
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.95
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.95
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.95
KOG0091|consensus	213		99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.95
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.95
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.95
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.95
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.95
PLN03110	216	Rab GTPase; Provisional	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.95
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.95
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.95
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.95
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.95
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.95
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.95
PLN03108	210	Rab family protein; Provisional	99.95
KOG0088|consensus	218		99.95
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.95
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.95
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.95
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.95
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.94
KOG0071|consensus	180		99.94
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.94
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.94
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.94
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.94
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.94
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.94
PLN03118	211	Rab family protein; Provisional	99.94
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.94
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.94
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.94
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.94
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.94
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.94
KOG0081|consensus	219		99.94
KOG0097|consensus	215		99.94
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.93
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.93
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.93
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.93
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.93
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
KOG0083|consensus	192		99.93
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.92
KOG0075|consensus	186		99.92
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.92
KOG0076|consensus	197		99.92
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.92
KOG0395|consensus	196		99.92
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.91
KOG0074|consensus	185		99.91
PLN00023	334	GTP-binding protein; Provisional	99.9
KOG0072|consensus	182		99.89
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.89
KOG0393|consensus	198		99.89
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.88
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.88
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.87
KOG4252|consensus	246		99.86
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.86
COG1100	219	GTPase SAR1 and related small G proteins [General	99.86
PTZ00099	176	rab6; Provisional	99.86
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.85
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.85
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.85
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.84
PRK03003	472	GTP-binding protein Der; Reviewed	99.83
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.83
PRK03003	472	GTP-binding protein Der; Reviewed	99.83
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.82
PRK12299	335	obgE GTPase CgtA; Reviewed	99.82
PRK15494	339	era GTPase Era; Provisional	99.82
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.82
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.82
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.81
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.81
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.81
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.81
PRK04213	201	GTP-binding protein; Provisional	99.81
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.81
COG2229	187	Predicted GTPase [General function prediction only	99.8
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.8
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.8
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.8
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.8
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.8
cd00881	189	GTP_translation_factor GTP translation factor fami	99.8
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.79
PRK11058	426	GTPase HflX; Provisional	99.79
KOG0077|consensus	193		99.78
KOG1673|consensus	205		99.78
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.78
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.78
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.78
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.78
PRK00093	435	GTP-binding protein Der; Reviewed	99.77
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.76
PRK05433	600	GTP-binding protein LepA; Provisional	99.76
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.76
PRK12297	424	obgE GTPase CgtA; Reviewed	99.75
PRK12296	500	obgE GTPase CgtA; Reviewed	99.75
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.75
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.75
PRK00089	292	era GTPase Era; Reviewed	99.74
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.74
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.74
KOG3883|consensus	198		99.73
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.73
CHL00189	742	infB translation initiation factor 2; Provisional	99.73
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.73
PRK00093	435	GTP-binding protein Der; Reviewed	99.73
PRK05306	787	infB translation initiation factor IF-2; Validated	99.73
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.73
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.73
KOG4423|consensus	229		99.72
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.72
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.72
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.7
PRK12298	390	obgE GTPase CgtA; Reviewed	99.7
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.7
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.69
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.69
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.69
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.68
COG1159	298	Era GTPase [General function prediction only]	99.68
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.67
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.67
PRK10218	607	GTP-binding protein; Provisional	99.67
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.67
PRK04004	586	translation initiation factor IF-2; Validated	99.67
COG1160	444	Predicted GTPases [General function prediction onl	99.67
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.67
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.67
KOG0096|consensus	216		99.67
KOG1707|consensus	625		99.66
COG1160	444	Predicted GTPases [General function prediction onl	99.65
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.65
PRK12317	425	elongation factor 1-alpha; Reviewed	99.64
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.63
COG0486	454	ThdF Predicted GTPase [General function prediction	99.63
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.63
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.63
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.62
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.6
KOG0090|consensus	238		99.6
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.58
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.58
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.57
KOG0082|consensus	354		99.57
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.57
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.56
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.56
COG1084	346	Predicted GTPase [General function prediction only	99.55
COG2262	411	HflX GTPases [General function prediction only]	99.55
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.54
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.54
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.54
PRK13351	687	elongation factor G; Reviewed	99.52
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.52
KOG0462|consensus	650		99.51
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.5
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.49
PRK12735	396	elongation factor Tu; Reviewed	99.48
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.47
PRK12736	394	elongation factor Tu; Reviewed	99.47
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.46
KOG1423|consensus	379		99.45
PLN00043	447	elongation factor 1-alpha; Provisional	99.44
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.44
PRK13768	253	GTPase; Provisional	99.43
PTZ00141	446	elongation factor 1- alpha; Provisional	99.43
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.42
KOG1145|consensus	683		99.42
KOG1489|consensus	366		99.41
COG0218	200	Predicted GTPase [General function prediction only	99.4
KOG1532|consensus	366		99.39
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.39
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.39
PRK12739	691	elongation factor G; Reviewed	99.39
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.38
PLN03126	478	Elongation factor Tu; Provisional	99.38
CHL00071	409	tufA elongation factor Tu	99.38
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.37
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.37
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.37
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.36
PLN03127	447	Elongation factor Tu; Provisional	99.36
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.36
COG1163	365	DRG Predicted GTPase [General function prediction	99.34
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.34
KOG0099|consensus	379		99.32
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.32
PRK09866	741	hypothetical protein; Provisional	99.31
PRK00049	396	elongation factor Tu; Reviewed	99.3
COG3596	296	Predicted GTPase [General function prediction only	99.3
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.3
PRK00007	693	elongation factor G; Reviewed	99.28
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.26
PRK12740	668	elongation factor G; Reviewed	99.26
KOG0085|consensus	359		99.25
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.22
COG0536	369	Obg Predicted GTPase [General function prediction	99.22
KOG1191|consensus	531		99.22
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.22
PRK14845	1049	translation initiation factor IF-2; Provisional	99.21
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.21
PTZ00416	836	elongation factor 2; Provisional	99.18
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.18
PRK07560	731	elongation factor EF-2; Reviewed	99.15
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.15
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.14
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.13
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.13
KOG1490|consensus	620		99.11
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.09
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.08
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.07
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.06
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.04
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.01
KOG3905|consensus	473		99.0
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	98.96
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.96
KOG3886|consensus	295		98.95
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	98.94
KOG1144|consensus	1064		98.93
KOG1707|consensus	625		98.93
KOG0458|consensus	603		98.89
KOG0468|consensus	971		98.88
PRK09602	396	translation-associated GTPase; Reviewed	98.87
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	98.87
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.87
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.8
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.79
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	98.79
KOG0410|consensus	410		98.78
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.76
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.73
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	98.68
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.66
KOG1954|consensus	532		98.65
KOG0705|consensus	749		98.65
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.64
KOG0461|consensus	522		98.61
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.6
PTZ00258	390	GTP-binding protein; Provisional	98.58
KOG3887|consensus	347		98.56
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.54
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.45
KOG0447|consensus	980		98.44
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.43
PRK09601	364	GTP-binding protein YchF; Reviewed	98.43
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.4
PRK12289	352	GTPase RsgA; Reviewed	98.36
cd03112	158	CobW_like The function of this protein family is u	98.35
KOG2655|consensus	366		98.33
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.33
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.31
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.31
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.29
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.26
PRK12288	347	GTPase RsgA; Reviewed	98.25
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.24
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.19
PRK00098	298	GTPase RsgA; Reviewed	98.18
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.18
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.18
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.17
PRK14974	336	cell division protein FtsY; Provisional	98.16
KOG0467|consensus	887		98.16
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.14
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.13
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.13
PRK13695	174	putative NTPase; Provisional	98.13
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.12
KOG1547|consensus	336		98.11
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.1
PRK10416	318	signal recognition particle-docking protein FtsY;	98.08
KOG0464|consensus	753		98.08
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.08
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.05
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.05
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.01
cd03114	148	ArgK-like The function of this protein family is u	97.98
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.97
KOG1486|consensus	364		97.97
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.96
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.95
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	97.95
KOG1491|consensus	391		97.94
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.91
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.9
KOG1534|consensus	273		97.89
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.89
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.89
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.88
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.87
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.87
KOG2486|consensus	320		97.87
TIGR00959	428	ffh signal recognition particle protein. This mode	97.85
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.84
KOG0448|consensus	749		97.84
KOG1143|consensus	591		97.84
KOG0780|consensus	483		97.82
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.82
PRK10867	433	signal recognition particle protein; Provisional	97.81
KOG0460|consensus	449		97.81
COG1161	322	Predicted GTPases [General function prediction onl	97.81
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	97.8
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.78
PRK12288	347	GTPase RsgA; Reviewed	97.77
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	97.77
PRK11537	318	putative GTP-binding protein YjiA; Provisional	97.75
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	97.74
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.74
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.7
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.69
KOG0465|consensus	721		97.69
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.68
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.67
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.67
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	97.64
COG0523	323	Putative GTPases (G3E family) [General function pr	97.63
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.63
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.63
PRK12289	352	GTPase RsgA; Reviewed	97.63
PF05729	166	NACHT: NACHT domain	97.62
COG3523	1188	IcmF Type VI protein secretion system component Va	97.62
COG1162	301	Predicted GTPases [General function prediction onl	97.61
PRK09563	287	rbgA GTPase YlqF; Reviewed	97.6
PF00004	132	AAA: ATPase family associated with various cellula	97.59
PRK13796	365	GTPase YqeH; Provisional	97.57
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	97.57
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.55
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.55
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.51
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.51
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.5
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.5
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.49
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.45
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.44
PRK04195	482	replication factor C large subunit; Provisional	97.42
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.4
PRK08118	167	topology modulation protein; Reviewed	97.39
KOG0469|consensus	842		97.39
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.38
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.38
PRK13796	365	GTPase YqeH; Provisional	97.37
PTZ00293	211	thymidine kinase; Provisional	97.36
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	97.36
PRK00098	298	GTPase RsgA; Reviewed	97.36
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.35
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.35
PF13173	128	AAA_14: AAA domain	97.35
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.34
PRK07261	171	topology modulation protein; Provisional	97.34
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.32
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.32
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.31
KOG0057|consensus	591		97.29
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.27
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.23
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	97.23
KOG0054|consensus	1381		97.18
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.18
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.17
KOG1533|consensus	290		97.17
PRK01889	356	GTPase RsgA; Reviewed	97.17
PRK08727	233	hypothetical protein; Validated	97.16
KOG0466|consensus	466		97.16
KOG0459|consensus	501		97.15
KOG2743|consensus	391		97.15
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	97.12
cd01128	249	rho_factor Transcription termination factor rho is	97.1
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.1
PRK06217	183	hypothetical protein; Validated	97.07
PRK05642	234	DNA replication initiation factor; Validated	97.06
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.05
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	97.05
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	97.03
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.02
KOG3859|consensus	406		97.01
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.01
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.98
smart00382	148	AAA ATPases associated with a variety of cellular	96.98
PRK08084	235	DNA replication initiation factor; Provisional	96.98
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.98
PLN03025	319	replication factor C subunit; Provisional	96.97
KOG0781|consensus	587		96.96
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.96
PRK00411	394	cdc6 cell division control protein 6; Reviewed	96.95
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.95
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.94
PRK06893	229	DNA replication initiation factor; Validated	96.94
cd03111	106	CpaE_like This protein family consists of proteins	96.94
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.9
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.89
PRK03839	180	putative kinase; Provisional	96.89
cd02036	179	MinD Bacterial cell division requires the formatio	96.89
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.89
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.89
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	96.88
PRK14738	206	gmk guanylate kinase; Provisional	96.88
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.86
KOG0066|consensus	807		96.86
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.84
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.83
PRK08116	268	hypothetical protein; Validated	96.83
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	96.82
PRK12377	248	putative replication protein; Provisional	96.82
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.82
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.82
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	96.81
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	96.81
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	96.8
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.79
PRK05480	209	uridine/cytidine kinase; Provisional	96.79
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	96.78
PRK14530	215	adenylate kinase; Provisional	96.77
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	96.77
PRK14532	188	adenylate kinase; Provisional	96.76

>KOG0084|consensus

Probab=100.00  E-value=1.1e-34  Score=206.51  Aligned_cols=135  Identities=23%  Similarity=0.388  Sum_probs=123.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||+|+.||..                     ++++.+++++|||+||++|+++...||++||+|
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi   85 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   85 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence            56789999999999999999999998                     778899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKF  162 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f  162 (171)
                      |+|||+++.+||+.+..|+.++-+. ...++|.++||||+|+.+  .++.++..++.         ++||+.+.||+++|
T Consensus        86 i~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F  164 (205)
T KOG0084|consen   86 IFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAF  164 (205)
T ss_pred             EEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHH
Confidence            9999999999999999999999544 456799999999999987  57777776664         88999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      ..++..+.
T Consensus       165 ~~la~~lk  172 (205)
T KOG0084|consen  165 LTLAKELK  172 (205)
T ss_pred             HHHHHHHH
Confidence            99998764

>KOG0092|consensus

Probab=100.00  E-value=1.3e-32  Score=195.30  Aligned_cols=134  Identities=21%  Similarity=0.319  Sum_probs=122.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ...+|++++|+.+||||||+.|+..                     ++...+++.||||+||++|+++.+.|++++++.|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            4689999999999999999999997                     4556799999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||+++.+||..++.|+.++-++.. +++-+.+||||+|+.+  .++.++...+.        |+|||+|.||.++|..
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~  161 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA  161 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence            99999999999999999999965543 7888889999999988  78888888887        7799999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      |++.+.
T Consensus       162 Ia~~lp  167 (200)
T KOG0092|consen  162 IAEKLP  167 (200)
T ss_pred             HHHhcc
Confidence            998764

>KOG0098|consensus

Probab=100.00  E-value=4.7e-32  Score=191.37  Aligned_cols=136  Identities=22%  Similarity=0.345  Sum_probs=126.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ....+|++++|+.|||||+|+.+|..                     ++...+++++|||+||+.|++...+||+.+.+.
T Consensus         3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga   82 (216)
T KOG0098|consen    3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA   82 (216)
T ss_pred             ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence            45789999999999999999999998                     788899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++..+||+.+..|+.++.++ ..+++-++++|||+|+..  +++.+|.+.+.        ++||++++||+++|.
T Consensus        83 lLVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   83 LLVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             EEEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            9999999999999999999999654 468999999999999976  78999998887        889999999999999


Q ss_pred             HHHHHHhC
Q psy11510        164 VLLNEVSN  171 (171)
Q Consensus       164 ~l~~~i~~  171 (171)
                      ..+.+||+
T Consensus       162 nta~~Iy~  169 (216)
T KOG0098|consen  162 NTAKEIYR  169 (216)
T ss_pred             HHHHHHHH
Confidence            99999873

>KOG0078|consensus

Probab=100.00  E-value=6.9e-32  Score=194.52  Aligned_cols=136  Identities=21%  Similarity=0.358  Sum_probs=125.2

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      ++...+||+++|++|||||+++.+|..                     .++..+.+++|||+||++|+++..+|++.|++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            467889999999999999999999998                     67778999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      +++|||+++..||+.+..|+..+- +...+++|.++||||+|+.+  .++.+..+.+.        |+||++|.||.++|
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~-e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF  166 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNID-EHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAF  166 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHH-hhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHH
Confidence            999999999999999999999984 44556999999999999987  68888877776        88999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      ..+++.|+
T Consensus       167 ~~La~~i~  174 (207)
T KOG0078|consen  167 LSLARDIL  174 (207)
T ss_pred             HHHHHHHH
Confidence            99999886

>cd04121 Rab40 Rab40 subfamily

Probab=99.97  E-value=9e-31  Score=191.40  Aligned_cols=133  Identities=20%  Similarity=0.328  Sum_probs=118.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ...+||+++|+.|||||||++++..                     .++..+.+++||++|+++|..+++.+++++|+++
T Consensus         4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il   83 (189)
T cd04121           4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII   83 (189)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999997                     2334578899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++.+|+.+..|+.++.+.  .++.|+++||||.|+.+  .++.++++.+.        ++||++|.||+++|++
T Consensus        84 lVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~  161 (189)
T cd04121          84 LVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE  161 (189)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            999999999999999999999654  36899999999999975  56777777665        7799999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.++
T Consensus       162 l~~~i~  167 (189)
T cd04121         162 LARIVL  167 (189)
T ss_pred             HHHHHH
Confidence            998775

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0094|consensus

Probab=99.97  E-value=3.2e-31  Score=188.49  Aligned_cols=135  Identities=18%  Similarity=0.327  Sum_probs=121.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+|++++|+.+|||||||.||..                     +....+.+++|||+|||+|+.+.++|++++.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            55679999999999999999999998                     455678999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      |.|||+++.+||+....|+.+++.+....++-+++||||.||.+  .++.+|.....        ++||+.|.||+++|.
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence            99999999999999999999999988777799999999999987  45666555443        779999999999999


Q ss_pred             HHHHHH
Q psy11510        164 VLLNEV  169 (171)
Q Consensus       164 ~l~~~i  169 (171)
                      .++..+
T Consensus       179 rIaa~l  184 (221)
T KOG0094|consen  179 RIAAAL  184 (221)
T ss_pred             HHHHhc
Confidence            988654

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.97  E-value=1.3e-30  Score=188.41  Aligned_cols=136  Identities=34%  Similarity=0.598  Sum_probs=118.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ++.+||+++|++|||||||++++..                .....+.+.+||++|++.++.+|+.+++++|++++|+|+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~   90 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS   90 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence            4579999999999999999999964                234567899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~  166 (171)
                      +++.++++..+|+..+++....+++|+++|+||+|+.+..+.+++.+.+             ++||++|.|++++|++++
T Consensus        91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  170 (175)
T smart00177       91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLS  170 (175)
T ss_pred             CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999998876555689999999999998776666665543             579999999999999998


Q ss_pred             HHHhC
Q psy11510        167 NEVSN  171 (171)
Q Consensus       167 ~~i~~  171 (171)
                      +.+.|
T Consensus       171 ~~~~~  175 (175)
T smart00177      171 NNLKN  175 (175)
T ss_pred             HHhcC
Confidence            87654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04120 Rab12 Rab12 subfamily

Probab=99.97  E-value=1.3e-30  Score=192.29  Aligned_cols=131  Identities=23%  Similarity=0.392  Sum_probs=112.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +.|+++|+.|||||||++++..                     .++..+.+++||++|+++|+.+++.|++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            4699999999999999999997                     2334588899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l~  166 (171)
                      |+++++||+.+..|+..+. ....+++|+++|+||+|+.+  .+..++..++.         ++||++|.||+++|++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~-~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~  159 (202)
T cd04120          81 DITKKETFDDLPKWMKMID-KYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV  159 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHH-HhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988764 33446899999999999964  45555554432         789999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       160 ~~~~  163 (202)
T cd04120         160 DDIL  163 (202)
T ss_pred             HHHH
Confidence            8765

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0080|consensus

Probab=99.97  E-value=3.4e-31  Score=183.01  Aligned_cols=137  Identities=23%  Similarity=0.313  Sum_probs=125.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      .-..+||++||.+|+|||||+.+|..                     +++.+.++.+|||+||++|+++.++||+.+.++
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi   87 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI   87 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence            45679999999999999999999997                     678889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      |+|||++..++|..+..|+.++-.....+++-.++|+||+|...  .++.+|..++.        |+||++.+||.++|+
T Consensus        88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe  167 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE  167 (209)
T ss_pred             EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence            99999999999999999999996666567888999999999983  78888888876        889999999999999


Q ss_pred             HHHHHHhC
Q psy11510        164 VLLNEVSN  171 (171)
Q Consensus       164 ~l~~~i~~  171 (171)
                      .++..|++
T Consensus       168 elveKIi~  175 (209)
T KOG0080|consen  168 ELVEKIIE  175 (209)
T ss_pred             HHHHHHhc
Confidence            99998874

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=2.5e-30  Score=187.87  Aligned_cols=136  Identities=35%  Similarity=0.606  Sum_probs=120.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ++.+||+++|++|||||||++++..                .+...+.+++||++|++.++.+|+.+++++|++|+|+|+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~   94 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS   94 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence            5679999999999999999999975                344567899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~  166 (171)
                      ++++++.+...++..+++....+++|+++|+||+|+++..+.+++.+.+             ++||++|+|+.++|++++
T Consensus        95 s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~  174 (181)
T PLN00223         95 NDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLS  174 (181)
T ss_pred             CcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHH
Confidence            9999999999888888776555789999999999999877777766543             469999999999999999


Q ss_pred             HHHhC
Q psy11510        167 NEVSN  171 (171)
Q Consensus       167 ~~i~~  171 (171)
                      +.+.+
T Consensus       175 ~~~~~  179 (181)
T PLN00223        175 NNIAN  179 (181)
T ss_pred             HHHhh
Confidence            88764

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.97  E-value=2.1e-30  Score=188.41  Aligned_cols=135  Identities=17%  Similarity=0.233  Sum_probs=117.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ++..+||+++|+.|||||||++++..                    ++...+.+++|||+|++.|..+++.+++++|+++
T Consensus         2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            35678999999999999999999987                    3455678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510         95 WVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK  150 (171)
Q Consensus        95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~  150 (171)
                      +|||++++.||+.+ ..|+..+.+.  .++.|+++||||+|+.+              .++.++..++.         |+
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~  159 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  159 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence            99999999999997 7888888553  36799999999999853              36666666655         77


Q ss_pred             hhccCCC-HHHHHHHHHHHHhC
Q psy11510        151 ATKVKLN-KQSKFQVLLNEVSN  171 (171)
Q Consensus       151 sa~~~~~-v~~~f~~l~~~i~~  171 (171)
                      ||++|.| |+++|..+++.++|
T Consensus       160 SAk~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         160 SALQSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CcCCCCCCHHHHHHHHHHHHhc
Confidence            9999999 99999999998765

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=2.9e-30  Score=185.41  Aligned_cols=132  Identities=36%  Similarity=0.628  Sum_probs=116.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ++.+||+++|++|||||||++++..                .....+.+++||++|+++++.+|+.+++++|++++|||+
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~   86 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS   86 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence            5679999999999999999999975                234568899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~  166 (171)
                      +++.+|++...|+.+++.....+++|+++|+||+|+.+.++.+++.+.+             ++||++|.|++++|++|+
T Consensus        87 t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149          87 ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHh
Confidence            9999999999999888776555689999999999998777777776653             679999999999999987


Q ss_pred             H
Q psy11510        167 N  167 (171)
Q Consensus       167 ~  167 (171)
                      +
T Consensus       167 ~  167 (168)
T cd04149         167 S  167 (168)
T ss_pred             c
Confidence            5

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd01875 RhoG RhoG subfamily

Probab=99.97  E-value=6.4e-30  Score=187.20  Aligned_cols=132  Identities=17%  Similarity=0.221  Sum_probs=111.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      ..+||+++|+.|||||||++++..                    +++..+.+++|||+|+++|+.+++.+++++|++++|
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            458999999999999999999997                    334457799999999999999999999999999999


Q ss_pred             EeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hhhh
Q psy11510         97 VDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EKAT  152 (171)
Q Consensus        97 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~sa  152 (171)
                      ||++++.||+.+. .|+..+...  .+++|+++||||+|+.+.              +..++...+.         ++||
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            9999999999997 577766443  358999999999999652              3333433332         7799


Q ss_pred             ccCCCHHHHHHHHHHHHh
Q psy11510        153 KVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       153 ~~~~~v~~~f~~l~~~i~  170 (171)
                      ++|.||+++|+.+++.++
T Consensus       160 k~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            999999999999998775

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=8.5e-30  Score=184.20  Aligned_cols=141  Identities=33%  Similarity=0.598  Sum_probs=128.7

Q ss_pred             cccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         29 LRHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        29 ~~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      +++....++.+||+++|+.||||||+++++..                +...+..+.+||.+|+..+++.|+.|++++|+
T Consensus         5 ~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~   84 (175)
T PF00025_consen    5 LSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADG   84 (175)
T ss_dssp             HHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTTESE
T ss_pred             HHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccccce
Confidence            34455568999999999999999999999997                55678899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccCCCH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVKLNK  158 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~~~v  158 (171)
                      +|||+|+++.+++.+..+.+..++......++|+++++||+|++++.+.+++.+.+              .+||.+|+|+
T Consensus        85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv  164 (175)
T PF00025_consen   85 IIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV  164 (175)
T ss_dssp             EEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred             eEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence            99999999999999999999999998777899999999999999988988888776              4599999999


Q ss_pred             HHHHHHHHHHH
Q psy11510        159 QSKFQVLLNEV  169 (171)
Q Consensus       159 ~~~f~~l~~~i  169 (171)
                      .+.|+||.++|
T Consensus       165 ~e~l~WL~~~~  175 (175)
T PF00025_consen  165 DEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcC
Confidence            99999999876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.97  E-value=6.3e-30  Score=184.32  Aligned_cols=133  Identities=18%  Similarity=0.274  Sum_probs=115.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      .+||+++|.+|||||||++++..                    .++..+.+++||++|++.++.+++.+++.+|++++||
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~   81 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY   81 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence            47999999999999999999986                    3344578899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++.+|+.+.+|+..+.+....+++|+++|+||+|+.+  .++.++..++.        ++||++|.||+++|+++++
T Consensus        82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~  161 (172)
T cd04141          82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVR  161 (172)
T ss_pred             ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999998877775543446899999999999865  46666666554        6799999999999999998


Q ss_pred             HHh
Q psy11510        168 EVS  170 (171)
Q Consensus       168 ~i~  170 (171)
                      .++
T Consensus       162 ~~~  164 (172)
T cd04141         162 EIR  164 (172)
T ss_pred             HHH
Confidence            775

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04133 Rop_like Rop subfamily

Probab=99.97  E-value=6.1e-30  Score=185.08  Aligned_cols=130  Identities=15%  Similarity=0.235  Sum_probs=113.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +||+++|++|||||||+.++..                    .++..+++.+|||+|+++|+.+++.+++++|++++|||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd   81 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS   81 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence            6999999999999999999997                    34456889999999999999999999999999999999


Q ss_pred             CCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC------------CCHHHHHHHH---------HhhhccCC
Q psy11510         99 SADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEGA------------LTPEDIKNVS---------EKATKVKL  156 (171)
Q Consensus        99 ~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~---------~~sa~~~~  156 (171)
                      ++++.||+.+ ..|+..+.+..  ++.|+++||||+|+.+.            +..++...+.         |+||++|.
T Consensus        82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            9999999998 68998885442  57999999999999542            5566655544         77999999


Q ss_pred             CHHHHHHHHHHHHh
Q psy11510        157 NKQSKFQVLLNEVS  170 (171)
Q Consensus       157 ~v~~~f~~l~~~i~  170 (171)
                      ||+++|+.+++.++
T Consensus       160 nV~~~F~~~~~~~~  173 (176)
T cd04133         160 NVKAVFDAAIKVVL  173 (176)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998765

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0095|consensus

Probab=99.97  E-value=3.8e-30  Score=176.07  Aligned_cols=134  Identities=22%  Similarity=0.278  Sum_probs=118.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      .+..+||+++|+.|+|||+|+++|..                     ++++.+++++|||+||++|+++.++|++.+|++
T Consensus         4 ykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahal   83 (213)
T KOG0095|consen    4 YKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHAL   83 (213)
T ss_pred             cceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceE
Confidence            45679999999999999999999997                     678899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHH--------HHhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNV--------SEKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~--------~~~sa~~~~~v~~~f~  163 (171)
                      |+|||++=..+|+.+.+|+.++-+ ....++--|+||||.|+.+  +++..-.+++        +++||+..+||+.+|.
T Consensus        84 ilvydiscqpsfdclpewlreie~-yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~  162 (213)
T KOG0095|consen   84 ILVYDISCQPSFDCLPEWLREIEQ-YANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFL  162 (213)
T ss_pred             EEEEecccCcchhhhHHHHHHHHH-HhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHH
Confidence            999999999999999999999944 4456788899999999987  4555444444        4889999999999999


Q ss_pred             HHHHHH
Q psy11510        164 VLLNEV  169 (171)
Q Consensus       164 ~l~~~i  169 (171)
                      +++-.+
T Consensus       163 ~~a~rl  168 (213)
T KOG0095|consen  163 DLACRL  168 (213)
T ss_pred             HHHHHH
Confidence            987554

>cd04122 Rab14 Rab14 subfamily

Probab=99.97  E-value=1.8e-29  Score=180.53  Aligned_cols=133  Identities=20%  Similarity=0.339  Sum_probs=115.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      .+||+++|++|||||||++++..                     .++..+.+.+||++|++++...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999986                     233456789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      ||++++.+|+.+..|+..+... ..++.|+++|+||+|+..  .++.+++.++.        ++||++|.|++++|..++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999887543 346799999999999976  35666666665        569999999999999999


Q ss_pred             HHHhC
Q psy11510        167 NEVSN  171 (171)
Q Consensus       167 ~~i~~  171 (171)
                      +.+++
T Consensus       161 ~~~~~  165 (166)
T cd04122         161 KKIYQ  165 (166)
T ss_pred             HHHhh
Confidence            88763

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0087|consensus

Probab=99.97  E-value=2.7e-30  Score=185.83  Aligned_cols=136  Identities=23%  Similarity=0.359  Sum_probs=125.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++++|||-|+.||..                     ++++.++.+||||+||++|+.+.++|++.+.+.
T Consensus        11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA   90 (222)
T KOG0087|consen   11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   90 (222)
T ss_pred             cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence            55789999999999999999999998                     778889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++...+|+.+.+|+.++..+ ..+++++++||||+||..  +++.++...+.        ++||..+.||+.+|+
T Consensus        91 llVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~  169 (222)
T KOG0087|consen   91 LLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE  169 (222)
T ss_pred             EEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence            9999999999999999999999765 457999999999999987  78888887776        679999999999999


Q ss_pred             HHHHHHhC
Q psy11510        164 VLLNEVSN  171 (171)
Q Consensus       164 ~l~~~i~~  171 (171)
                      .++.+|++
T Consensus       170 ~~l~~I~~  177 (222)
T KOG0087|consen  170 RVLTEIYK  177 (222)
T ss_pred             HHHHHHHH
Confidence            99999874

>cd04131 Rnd Rnd subfamily

Probab=99.97  E-value=1.1e-29  Score=184.02  Aligned_cols=132  Identities=16%  Similarity=0.218  Sum_probs=113.4

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      ++||+++|+.|||||||++++..                    ++...+.+++|||+|++.|..+++.+++++|++++||
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            47999999999999999999987                    2345678999999999999999999999999999999


Q ss_pred             eCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhc
Q psy11510         98 DSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATK  153 (171)
Q Consensus        98 d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~  153 (171)
                      |++++.||+.+ ..|+..+.+.  .++.|+++||||+|+.+              +++.++..++.         |+||+
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            99999999996 7888888554  36899999999999853              36666666655         67999


Q ss_pred             cCCC-HHHHHHHHHHHHhC
Q psy11510        154 VKLN-KQSKFQVLLNEVSN  171 (171)
Q Consensus       154 ~~~~-v~~~f~~l~~~i~~  171 (171)
                      +|+| |+++|..+++..++
T Consensus       159 ~~~~~v~~~F~~~~~~~~~  177 (178)
T cd04131         159 TSEKSVRDIFHVATMACLN  177 (178)
T ss_pred             cCCcCHHHHHHHHHHHHhc
Confidence            9995 99999999987653

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.97  E-value=2.6e-29  Score=178.86  Aligned_cols=129  Identities=35%  Similarity=0.612  Sum_probs=111.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK  102 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~  102 (171)
                      +||+++|.+|||||||++++..                .....+.+.+||++|++++..+|+.+++++|++++|+|++++
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~   80 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence            5899999999999999999964                234567899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHH
Q psy11510        103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      .+|+++.+|+..++......++|+++++||+|+.+....+++.+..             ++||++|.|++++|+++++
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150          81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            9999999999988766555679999999999998766655544433             5699999999999999864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=3.5e-29  Score=182.01  Aligned_cols=135  Identities=34%  Similarity=0.593  Sum_probs=117.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ++.+||+++|++|||||||++++..                .+..++.+++||++|+++++.+|+.+++++|++|+|+|+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~   94 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDS   94 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeC
Confidence            5679999999999999999999965                234567899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~  166 (171)
                      ++++++++...++..++......++|+++|+||+|+++..+.+++.+.+             ++||++|.|++++|++++
T Consensus        95 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~  174 (182)
T PTZ00133         95 NDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLS  174 (182)
T ss_pred             CCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHH
Confidence            9999999999888888766555679999999999998766666665543             569999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       175 ~~i~  178 (182)
T PTZ00133        175 ANIK  178 (182)
T ss_pred             HHHH
Confidence            8764

>KOG0093|consensus

Probab=99.97  E-value=2.9e-29  Score=171.12  Aligned_cols=134  Identities=20%  Similarity=0.360  Sum_probs=117.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ...|++++|++.+|||||+.++..                     -...++.+++|||.|+++|+.+...+++.++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            457999999999999999999998                     23356899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      +||+++.++|..++.|..++- ...-.+.|+|+|+||||+.+  .++.+..+.+.        |+||+.|.||+++|+.+
T Consensus       100 myDitNeeSf~svqdw~tqIk-tysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~l  178 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIK-TYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERL  178 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHhe-eeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHH
Confidence            999999999999999998884 34456899999999999987  45666655544        88999999999999999


Q ss_pred             HHHHhC
Q psy11510        166 LNEVSN  171 (171)
Q Consensus       166 ~~~i~~  171 (171)
                      ...|++
T Consensus       179 v~~Ic~  184 (193)
T KOG0093|consen  179 VDIICD  184 (193)
T ss_pred             HHHHHH
Confidence            988763

>KOG0079|consensus

Probab=99.97  E-value=7e-30  Score=174.35  Aligned_cols=132  Identities=23%  Similarity=0.377  Sum_probs=120.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      +.++.+++|++|+|||+|+.+|..                     +++..++++|||++|+++|+.+...|++..|++++
T Consensus         7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v   86 (198)
T KOG0079|consen    7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV   86 (198)
T ss_pred             HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence            456889999999999999999987                     67888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||+++.+||....+|+.++.++.  +.+|-++||||+|.++  .+..++.+.+.        |+|++.++|++.+|..|
T Consensus        87 VYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ci  164 (198)
T KOG0079|consen   87 VYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCI  164 (198)
T ss_pred             EEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHH
Confidence            999999999999999999996653  5899999999999998  56777777776        88999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      .++++
T Consensus       165 t~qvl  169 (198)
T KOG0079|consen  165 TKQVL  169 (198)
T ss_pred             HHHHH
Confidence            88775

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.97  E-value=3.9e-29  Score=184.31  Aligned_cols=132  Identities=22%  Similarity=0.301  Sum_probs=114.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cc-cCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +||+++|++|||||||++++.+                     .+ +..+.+.+||++|++++..+++.+++++|++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            5899999999999999999987                     22 4467889999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcc---ccCCCeEEEEEeCCCCC--CCCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEE---RLAGATLLVFANKQDIE--GALTPEDIKNVS---------EKATKVKLNKQSKF  162 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~---------~~sa~~~~~v~~~f  162 (171)
                      ||++++.+|+.+..|+..+....   ...++|+++|+||+|+.  ..++.+++.++.         ++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999988775432   23579999999999997  356677766654         56999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +++++.++
T Consensus       161 ~~l~~~l~  168 (201)
T cd04107         161 RFLVKNIL  168 (201)
T ss_pred             HHHHHHHH
Confidence            99998775

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0394|consensus

Probab=99.96  E-value=1.9e-29  Score=177.83  Aligned_cols=136  Identities=18%  Similarity=0.315  Sum_probs=123.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      .+..+||+++|++|+|||||++++.+                     ++...+.+++|||+||++|+++...|++.+|++
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            46689999999999999999999998                     666678899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcccc---CCCeEEEEEeCCCCCC----CCCHHHHHHHH---------HhhhccCCC
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERL---AGATLLVFANKQDIEG----ALTPEDIKNVS---------EKATKVKLN  157 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~Dl~~----~~~~~~~~~~~---------~~sa~~~~~  157 (171)
                      ++|||+.++.+|+.+..|..+++.+...   ..-|.+++|||+|+.+    .++......++         |+|||.+.|
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N  165 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN  165 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence            9999999999999999999999876543   3689999999999976    36777788887         889999999


Q ss_pred             HHHHHHHHHHHHh
Q psy11510        158 KQSKFQVLLNEVS  170 (171)
Q Consensus       158 v~~~f~~l~~~i~  170 (171)
                      |.+.|+.+++..+
T Consensus       166 V~~AFe~ia~~aL  178 (210)
T KOG0394|consen  166 VDEAFEEIARRAL  178 (210)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998765

>cd04127 Rab27A Rab27a subfamily

Probab=99.96  E-value=6.8e-29  Score=179.51  Aligned_cols=135  Identities=20%  Similarity=0.329  Sum_probs=116.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cc----------cCceEEEEEecCCccchhHHHHH
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IM----------TFRFKLNIWDVGGQKSLRSYWRN   85 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~----------~~~~~~~i~d~~g~~~~~~~~~~   85 (171)
                      +.+||+++|++|||||||++++.+                     ..          ...+.+.+||++|++++..++..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            569999999999999999999976                     10          23578899999999999999999


Q ss_pred             hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccC
Q psy11510         86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVK  155 (171)
Q Consensus        86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~  155 (171)
                      +++++|++++|||++++++|..+..|+..+......++.|+++|+||+|+.+  .++.+++.++.        ++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            9999999999999999999999999999986654456899999999999965  45656665544        6799999


Q ss_pred             CCHHHHHHHHHHHHhC
Q psy11510        156 LNKQSKFQVLLNEVSN  171 (171)
Q Consensus       156 ~~v~~~f~~l~~~i~~  171 (171)
                      .|++++|+.+++.+++
T Consensus       163 ~~v~~l~~~l~~~~~~  178 (180)
T cd04127         163 TNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999988763

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.96  E-value=7.5e-29  Score=186.14  Aligned_cols=133  Identities=14%  Similarity=0.191  Sum_probs=115.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ...+||+++|+.|||||+|+.++..                    +++..+.+.+|||+|++.|..+++.+++++|++++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            3579999999999999999999986                    34456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhh
Q psy11510         96 VVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKA  151 (171)
Q Consensus        96 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~s  151 (171)
                      |||++++.+|+.+ ..|+..+...  .++.|+++|+||+|+.+              .++.++..++.         ++|
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDY--CPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            9999999999985 7888888543  25789999999999853              36666666665         779


Q ss_pred             hccCC-CHHHHHHHHHHHHh
Q psy11510        152 TKVKL-NKQSKFQVLLNEVS  170 (171)
Q Consensus       152 a~~~~-~v~~~f~~l~~~i~  170 (171)
                      |++|. ||+++|..++..++
T Consensus       169 Aktg~~~V~e~F~~~~~~~~  188 (232)
T cd04174         169 AFTSEKSIHSIFRSASLLCL  188 (232)
T ss_pred             CCcCCcCHHHHHHHHHHHHH
Confidence            99998 89999999998765

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0070|consensus

Probab=99.96  E-value=1.6e-29  Score=178.79  Aligned_cols=138  Identities=37%  Similarity=0.595  Sum_probs=128.8

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      ....+.++|+++|..++||||+++++..                +..+++.+.+||.+||+++++.|+.|+++++++|||
T Consensus        12 ~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV   91 (181)
T KOG0070|consen   12 LFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV   91 (181)
T ss_pred             ccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence            3478899999999999999999999997                667799999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~  163 (171)
                      +|+++.+++.+.++.+..++.+....+.|+++++||+|++++.+..++.+.+             .++|.+|+|+.+.++
T Consensus        92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~  171 (181)
T KOG0070|consen   92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLD  171 (181)
T ss_pred             EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHH
Confidence            9999999999999999999998877899999999999999999998888887             568999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      ++.+.+-
T Consensus       172 wl~~~~~  178 (181)
T KOG0070|consen  172 WLSNNLK  178 (181)
T ss_pred             HHHHHHh
Confidence            9988763

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=8.1e-29  Score=177.88  Aligned_cols=131  Identities=34%  Similarity=0.578  Sum_probs=115.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR  103 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~  103 (171)
                      ||+++|++|||||||++++.+                ....++.+.+||+||++.+...|..+++++|++++|+|+++++
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~   80 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD   80 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence            689999999999999999987                3345678899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccCCCHHHHHHHHHHHH
Q psy11510        104 RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       104 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ++.++..|+..+++.....+.|+++|+||+|+.++.+.+++.+.+              ++||++|.|++++|+++++.+
T Consensus        81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~  160 (169)
T cd04158          81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL  160 (169)
T ss_pred             HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence            999999999999876555679999999999998877777665542              569999999999999999876


Q ss_pred             h
Q psy11510        170 S  170 (171)
Q Consensus       170 ~  170 (171)
                      .
T Consensus       161 ~  161 (169)
T cd04158         161 V  161 (169)
T ss_pred             h
Confidence            4

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04136 Rap_like Rap-like subfamily

Probab=99.96  E-value=7.7e-29  Score=176.10  Aligned_cols=131  Identities=18%  Similarity=0.291  Sum_probs=112.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +||+++|++|||||||++++..                    .++..+.+.+||++|++++..+++.+++++|++++|||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence            7999999999999999999986                    23335678899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      ++++.+|+.+..|+..+.+....+++|+++|+||+|+.+  .+..++...+.        ++||++|.|+.++|+++++.
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd04136          82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQ  161 (163)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Confidence            999999999999999887655556899999999999964  34444433332        67999999999999999886


Q ss_pred             H
Q psy11510        169 V  169 (171)
Q Consensus       169 i  169 (171)
                      +
T Consensus       162 ~  162 (163)
T cd04136         162 I  162 (163)
T ss_pred             c
Confidence            5

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0073|consensus

Probab=99.96  E-value=4.6e-29  Score=172.78  Aligned_cols=142  Identities=48%  Similarity=0.749  Sum_probs=128.5

Q ss_pred             cccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         29 LRHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        29 ~~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      +++.....+.++|+++|..|+||||++++|.+                ...+...+++||++||..+++.|+.||..+|+
T Consensus         7 lrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfestdg   86 (185)
T KOG0073|consen    7 LRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFESTDG   86 (185)
T ss_pred             HHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhccCe
Confidence            44445466799999999999999999999998                56678899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccCCCH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVKLNK  158 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~~~v  158 (171)
                      +|+|+|++++.+|++....+..++.+....+.|+++++||+|++.+.+.+++...+              .+|+.+|+++
T Consensus        87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l  166 (185)
T KOG0073|consen   87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL  166 (185)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence            99999999999999999999999998888999999999999999888888877655              4589999999


Q ss_pred             HHHHHHHHHHHh
Q psy11510        159 QSKFQVLLNEVS  170 (171)
Q Consensus       159 ~~~f~~l~~~i~  170 (171)
                      .+-|+++++.+.
T Consensus       167 ~~gidWL~~~l~  178 (185)
T KOG0073|consen  167 LEGIDWLCDDLM  178 (185)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>PTZ00369 Ras-like protein; Provisional

Probab=99.96  E-value=1e-28  Score=180.39  Aligned_cols=135  Identities=17%  Similarity=0.281  Sum_probs=115.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      .+.+||+++|++|||||||++++..                    +++..+.+++||++|++++..++..+++++|++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            4579999999999999999999987                    23445678899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||++++++|+.+..|+..+.+....++.|+++|+||+|+.+  .+..++.....        ++||++|.|++++|+++
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999999887655556899999999999965  34544443332        77999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       163 ~~~l~  167 (189)
T PTZ00369        163 VREIR  167 (189)
T ss_pred             HHHHH
Confidence            98764

>cd04175 Rap1 Rap1 subgroup

Probab=99.96  E-value=9.6e-29  Score=176.22  Aligned_cols=133  Identities=17%  Similarity=0.279  Sum_probs=113.4

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      ++||+++|.+|||||||++++..                    .++..+.+.+||++|++.+..+++.+++++|++++||
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY   80 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence            47999999999999999999985                    2334567889999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |+++..+|+.+.+|+..+......++.|+++|+||+|+.+  ..+.++...+.        ++||++|.|++++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175          81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999999997765557899999999999975  23444333332        6799999999999999998


Q ss_pred             HHh
Q psy11510        168 EVS  170 (171)
Q Consensus       168 ~i~  170 (171)
                      .+-
T Consensus       161 ~l~  163 (164)
T cd04175         161 QIN  163 (164)
T ss_pred             Hhh
Confidence            763

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>KOG0086|consensus

Probab=99.96  E-value=5.5e-29  Score=170.94  Aligned_cols=136  Identities=18%  Similarity=0.275  Sum_probs=121.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ....+|++++|+.|.|||+|+.+|..                     +..+.++++||||+||++|++....|++.+.+.
T Consensus         6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA   85 (214)
T KOG0086|consen    6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA   85 (214)
T ss_pred             hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            45679999999999999999999997                     556789999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||+++.++|+.+-+|+.+... ...+++-+++++||.|+.+  .+...+..++.        |+|+++|+||+++|-
T Consensus        86 lLVYD~TsrdsfnaLtnWL~DaR~-lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl  164 (214)
T KOG0086|consen   86 LLVYDITSRDSFNALTNWLTDART-LASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  164 (214)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHh-hCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHH
Confidence            999999999999999999999854 3457899999999999976  46666666654        889999999999999


Q ss_pred             HHHHHHhC
Q psy11510        164 VLLNEVSN  171 (171)
Q Consensus       164 ~l~~~i~~  171 (171)
                      ..++.|++
T Consensus       165 ~c~~tIl~  172 (214)
T KOG0086|consen  165 KCARTILN  172 (214)
T ss_pred             HHHHHHHH
Confidence            99998874

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.96  E-value=1.8e-28  Score=173.66  Aligned_cols=132  Identities=15%  Similarity=0.266  Sum_probs=112.1

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      .+||+++|++|||||||++++.+                    ++...+.+.+||++|++++..+++.+++++|++++||
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            36999999999999999999987                    2223456889999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      |+++..+|+.+..|+..+.+.....+.|+++|+||+|+.+ ....+++.+..        ++||++|.|++++|+++++.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  160 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            9999999999999998887655556899999999999976 33444444443        66999999999999999876


Q ss_pred             H
Q psy11510        169 V  169 (171)
Q Consensus       169 i  169 (171)
                      +
T Consensus       161 ~  161 (162)
T cd04138         161 I  161 (162)
T ss_pred             h
Confidence            4

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.96  E-value=1.7e-28  Score=183.32  Aligned_cols=133  Identities=14%  Similarity=0.250  Sum_probs=114.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ....+||+++|.+|||||||++++..                     .+...+.+.+||++|+++|..++..+++++|++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            46789999999999999999999875                     233457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHH--------HHhhhccCCCHHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNV--------SEKATKVKLNKQSKFQV  164 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~--------~~~sa~~~~~v~~~f~~  164 (171)
                      ++|||++++.+|+.+..|+..+.+.  .++.|+++||||+|+.+ .+..+++ .+        .++||++|.|++++|++
T Consensus        90 ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~  166 (219)
T PLN03071         90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (219)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence            9999999999999999999998654  36899999999999965 3344444 32        27799999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.++
T Consensus       167 l~~~~~  172 (219)
T PLN03071        167 LARKLA  172 (219)
T ss_pred             HHHHHH
Confidence            998875

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=2.1e-28  Score=176.19  Aligned_cols=138  Identities=52%  Similarity=0.793  Sum_probs=117.6

Q ss_pred             ccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         30 RHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        30 ~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ++.......+||+++|++|||||||++++.+                ...+.+.+.+||+||++.++.++..+++++|++
T Consensus         6 ~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154           6 RKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             hhhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            3444456789999999999999999999987                223456789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQS  160 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~  160 (171)
                      ++|+|++++.+|++...|+..++......++|+++|+||+|+.+....+++.+.+             ++||++|.|+++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  165 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ  165 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence            9999999999999999999888765555789999999999998766666655543             679999999999


Q ss_pred             HHHHHHH
Q psy11510        161 KFQVLLN  167 (171)
Q Consensus       161 ~f~~l~~  167 (171)
                      +|+++++
T Consensus       166 l~~~l~~  172 (173)
T cd04154         166 GIDWLVD  172 (173)
T ss_pred             HHHHHhc
Confidence            9999874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.96  E-value=1.6e-28  Score=177.50  Aligned_cols=131  Identities=15%  Similarity=0.212  Sum_probs=108.7

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      .+||+++|+.|||||||++++..                    .+...+.+++||++|++++..++..+++++|++++||
T Consensus         1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            37999999999999999999997                    2233478899999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hhhhc
Q psy11510         98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EKATK  153 (171)
Q Consensus        98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~sa~  153 (171)
                      |++++++|+.+. .|+..+...  .+++|+++|+||+|+.+.              +..+++.++.         ++||+
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~  158 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence            999999999997 477777443  357999999999998542              3344433332         67999


Q ss_pred             cCCCHHHHHHHHHHHHh
Q psy11510        154 VKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~i~  170 (171)
                      +|.|++++|+.++++.+
T Consensus       159 tg~~v~~~f~~~~~~~~  175 (175)
T cd01874         159 TQKGLKNVFDEAILAAL  175 (175)
T ss_pred             CCCCHHHHHHHHHHHhC
Confidence            99999999999998653

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.96  E-value=1.6e-28  Score=175.95  Aligned_cols=130  Identities=17%  Similarity=0.266  Sum_probs=109.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++..                     .+...+.+.+||++|++.+..++..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            5899999999999999999975                     1234578899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhhhccCCCHHHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      |++++++|+.+..|+..+....  .++|+++|+||+|+.+.....+...+        .++||++|.|++++|+++++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  158 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL  158 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence            9999999999999999986553  38999999999999753222222222        2779999999999999999887


Q ss_pred             h
Q psy11510        170 S  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       159 ~  159 (166)
T cd00877         159 L  159 (166)
T ss_pred             H
Confidence            5

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.96  E-value=3.4e-28  Score=174.09  Aligned_cols=134  Identities=21%  Similarity=0.390  Sum_probs=115.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++.+                     ..+..+.+.+||++|++++..++..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            468999999999999999999987                     23335788999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||++++++|+.+..|+..+... ...+.|+++|+||+|+.+  .+..++.....        ++||++|.|++++|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i  160 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL  160 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999988653 346799999999999975  34555554443        66999999999999999


Q ss_pred             HHHHhC
Q psy11510        166 LNEVSN  171 (171)
Q Consensus       166 ~~~i~~  171 (171)
                      ++.+++
T Consensus       161 ~~~~~~  166 (167)
T cd01867         161 AKDIKK  166 (167)
T ss_pred             HHHHHh
Confidence            998763

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.96  E-value=3.8e-28  Score=172.92  Aligned_cols=133  Identities=21%  Similarity=0.326  Sum_probs=114.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++.+                     ..+..+.+++||++|++.+..+++.+++++|++++|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            5899999999999999999987                     2334678899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhcccc----CCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERL----AGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~----~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      |++++.+|+.+..|+..+.+....    .+.|+++|+||+|+.+  ..+.++...+.        ++||++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999988765432    5799999999999973  44555554443        669999999999999


Q ss_pred             HHHHHHhC
Q psy11510        164 VLLNEVSN  171 (171)
Q Consensus       164 ~l~~~i~~  171 (171)
                      .+++.+++
T Consensus       161 ~l~~~l~~  168 (168)
T cd04119         161 TLFSSIVD  168 (168)
T ss_pred             HHHHHHhC
Confidence            99998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.96  E-value=3.7e-28  Score=172.76  Aligned_cols=133  Identities=18%  Similarity=0.301  Sum_probs=113.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|+|||||++++.+                    .++..+.+++||+||++++..+++.+++++|++++|
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            358999999999999999999876                    233346789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      ||++++.+|+.+..|+..+.+.....+.|+++++||+|+..  .+..++...+.        ++||++|.|++++|+.++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999887654456899999999999975  24444544443        669999999999999998


Q ss_pred             HHH
Q psy11510        167 NEV  169 (171)
Q Consensus       167 ~~i  169 (171)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            753

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.96  E-value=3.8e-28  Score=173.46  Aligned_cols=133  Identities=21%  Similarity=0.363  Sum_probs=113.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      .+||+++|++|||||||++++.+                     ..+..+.+++||++|++++...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            57999999999999999999987                     122346789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      ||++++++|..+..|+..+... ..++.|+++|+||+|+..  .++.++...+.        ++||++|.|+.++|+.++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  160 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA  160 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence            9999999999999999988543 235799999999999865  35555555554        579999999999999999


Q ss_pred             HHHhC
Q psy11510        167 NEVSN  171 (171)
Q Consensus       167 ~~i~~  171 (171)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T cd01869         161 REIKK  165 (166)
T ss_pred             HHHHh
Confidence            88753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.96  E-value=4.7e-28  Score=172.46  Aligned_cols=132  Identities=20%  Similarity=0.326  Sum_probs=112.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +||+++|++|||||||++++.+                    .+...+.+.+||+||++++..++..+++++|++++|||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence            5899999999999999999986                    23345788999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      ++++++|+.+..|+..+.+.....++|+++|+||+|+.+  ....+++....        ++||++|.|++++|+.+++.
T Consensus        81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~  160 (164)
T smart00173       81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVRE  160 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHH
Confidence            999999999999988887665556899999999999975  23444444333        66999999999999999987


Q ss_pred             Hh
Q psy11510        169 VS  170 (171)
Q Consensus       169 i~  170 (171)
                      +.
T Consensus       161 ~~  162 (164)
T smart00173      161 IR  162 (164)
T ss_pred             Hh
Confidence            63

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04116 Rab9 Rab9 subfamily

Probab=99.96  E-value=5.4e-28  Score=173.28  Aligned_cols=134  Identities=20%  Similarity=0.329  Sum_probs=115.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ...+||+++|++|||||||++++..                     .++..+.+.+||++|++++..++..+++.+|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            4679999999999999999999986                     2344567899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCC-CCCHHHHHHHH---------HhhhccCCCHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEG-ALTPEDIKNVS---------EKATKVKLNKQSK  161 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~---------~~sa~~~~~v~~~  161 (171)
                      +|||++++++|+.+..|+..+.....   ..++|+++|+||+|+.. .+..+++.++.         ++||++|.|+.++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  162 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA  162 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence            99999999999999999988866432   25789999999999965 45666666654         6699999999999


Q ss_pred             HHHHHHHH
Q psy11510        162 FQVLLNEV  169 (171)
Q Consensus       162 f~~l~~~i  169 (171)
                      |+.+++++
T Consensus       163 ~~~~~~~~  170 (170)
T cd04116         163 FEEAVRRV  170 (170)
T ss_pred             HHHHHhhC
Confidence            99998763

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04117 Rab15 Rab15 subfamily

Probab=99.96  E-value=4.6e-28  Score=172.68  Aligned_cols=129  Identities=19%  Similarity=0.326  Sum_probs=110.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++..                     ..+..+.+.+||++|++++..+++.+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            5899999999999999999987                     2223467899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++++|+.+..|+..+.+. ...+.|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+++++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~  159 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence            999999999999999988654 235799999999999965  34555555444        6799999999999999987


Q ss_pred             H
Q psy11510        168 E  168 (171)
Q Consensus       168 ~  168 (171)
                      .
T Consensus       160 ~  160 (161)
T cd04117         160 L  160 (161)
T ss_pred             h
Confidence            5

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04111 Rab39 Rab39 subfamily

Probab=99.96  E-value=5e-28  Score=179.78  Aligned_cols=134  Identities=23%  Similarity=0.408  Sum_probs=115.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      +.+||+++|++|||||||++++.+                     . ++..+.+++||++|++++..++..+++++|+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            358999999999999999999987                     1 233578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++++|+.+..|+..+.+......+|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+.
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999987654445688999999999975  35555554444        6699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.++
T Consensus       161 l~~~~~  166 (211)
T cd04111         161 LTQEIY  166 (211)
T ss_pred             HHHHHH
Confidence            998775

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=99.96  E-value=4.9e-28  Score=172.31  Aligned_cols=132  Identities=16%  Similarity=0.250  Sum_probs=110.9

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      .+||+++|.+|||||||++++..                    .++..+.+.+||++|++++..+++.+++++|++++||
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~   80 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence            47999999999999999999887                    2333466889999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++.+|+++..|+..+.+.....++|+++|+||+|+..  .+..++.....        ++||++|.|+.++|..+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176          81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999998887654456899999999999854  33433333322        6699999999999999987


Q ss_pred             HH
Q psy11510        168 EV  169 (171)
Q Consensus       168 ~i  169 (171)
                      .+
T Consensus       161 ~l  162 (163)
T cd04176         161 QM  162 (163)
T ss_pred             hc
Confidence            53

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.96  E-value=3.7e-28  Score=175.42  Aligned_cols=129  Identities=13%  Similarity=0.196  Sum_probs=108.1

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      .+||+++|++|||||||+.++..                    .++..+.+.+||++|++.+..+++.+++++|++|+||
T Consensus         1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            37999999999999999999887                    3334578899999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hhhhc
Q psy11510         98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EKATK  153 (171)
Q Consensus        98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~sa~  153 (171)
                      |++++++|+.+. .|+..+...  .++.|+++|+||+|+.+.              ++.++..++.         ++||+
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  158 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence            999999999996 577766443  358999999999999542              3444444443         77999


Q ss_pred             cCCCHHHHHHHHHHH
Q psy11510        154 VKLNKQSKFQVLLNE  168 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~  168 (171)
                      +|+|++++|+.+++.
T Consensus       159 ~~~~i~~~f~~l~~~  173 (174)
T cd01871         159 TQKGLKTVFDEAIRA  173 (174)
T ss_pred             ccCCHHHHHHHHHHh
Confidence            999999999999875

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd01865 Rab3 Rab3 subfamily

Probab=99.96  E-value=7e-28  Score=172.17  Aligned_cols=131  Identities=21%  Similarity=0.345  Sum_probs=111.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++.+                     .+...+.+.+||++|++++..++..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            7999999999999999999987                     1223467899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++++|+.+..|+..+.+. ...++|+++|+||+|+.+  .+..++..+..        ++||++|.|+.++|+.+++
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999988543 335799999999999965  34445444433        6799999999999999998


Q ss_pred             HHh
Q psy11510        168 EVS  170 (171)
Q Consensus       168 ~i~  170 (171)
                      .+.
T Consensus       161 ~~~  163 (165)
T cd01865         161 IIC  163 (165)
T ss_pred             HHH
Confidence            764

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04144 Ras2 Ras2 subfamily

Probab=99.96  E-value=5.5e-28  Score=176.72  Aligned_cols=131  Identities=17%  Similarity=0.266  Sum_probs=110.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ||+++|.+|||||||++++..                    .++..+.+.+||++|++++..++..+++++|++++|||+
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI   80 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence            689999999999999999976                    223346689999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEER--LAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      ++..+|+.+..|+..+.....  .+++|+++|+||+|+..  .++.++..++.        ++||++|.|++++|+++++
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~  160 (190)
T cd04144          81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVR  160 (190)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHH
Confidence            999999999999888765432  35799999999999964  44555444433        6799999999999999998


Q ss_pred             HHh
Q psy11510        168 EVS  170 (171)
Q Consensus       168 ~i~  170 (171)
                      .+.
T Consensus       161 ~l~  163 (190)
T cd04144         161 ALR  163 (190)
T ss_pred             HHH
Confidence            764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=99.96  E-value=9.7e-28  Score=179.01  Aligned_cols=131  Identities=24%  Similarity=0.318  Sum_probs=111.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK  102 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~  102 (171)
                      +||+++|.+|||||||++++..                .....+.+.+||++|++.+..+++.+++++|++|+|||++++
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~   80 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV   80 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence            5899999999999999999997                112356789999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC---------------------CCCHHHHHHH--------------
Q psy11510        103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEG---------------------ALTPEDIKNV--------------  147 (171)
Q Consensus       103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~---------------------~~~~~~~~~~--------------  147 (171)
                      ++|+.+..|+..+.+. ..+++|+++|+||+|+.+                     .+..++...+              
T Consensus        81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~  159 (220)
T cd04126          81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL  159 (220)
T ss_pred             HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence            9999999998888654 346799999999999854                     3445554433              


Q ss_pred             --------HHhhhccCCCHHHHHHHHHHHHh
Q psy11510        148 --------SEKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       148 --------~~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                              .|+||++|.||+++|..+++.++
T Consensus       160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             cccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                    36899999999999999998775

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.96  E-value=1.2e-27  Score=178.70  Aligned_cols=131  Identities=18%  Similarity=0.236  Sum_probs=109.1

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      ++||+++|+.|||||||+.++..                    +++..+.+.+||++|++.|..+++.+++++|++++||
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            47999999999999999999987                    3445678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhc
Q psy11510         98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATK  153 (171)
Q Consensus        98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~  153 (171)
                      |++++++|+.+. .|...+ .. ..++.|+++||||+|+.+              +++.++...+.         |+||+
T Consensus        81 dis~~~Sf~~i~~~w~~~~-~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          81 DISRPETLDSVLKKWQGET-QE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHH-Hh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            999999999985 455544 32 346899999999999954              24545544433         78999


Q ss_pred             cCCC-HHHHHHHHHHHHh
Q psy11510        154 VKLN-KQSKFQVLLNEVS  170 (171)
Q Consensus       154 ~~~~-v~~~f~~l~~~i~  170 (171)
                      ++.| |+++|..++++.+
T Consensus       159 ~~~~~V~~~F~~~~~~~~  176 (222)
T cd04173         159 SSERSVRDVFHVATVASL  176 (222)
T ss_pred             cCCcCHHHHHHHHHHHHH
Confidence            9985 9999999988764

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04110 Rab35 Rab35 subfamily

Probab=99.96  E-value=1.7e-27  Score=175.41  Aligned_cols=133  Identities=24%  Similarity=0.367  Sum_probs=114.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .+.+||+++|++|||||||++++.+                     ..+..+.+.+||+||++.+..++..+++++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            3579999999999999999999987                     1233467899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++++|+.+..|+..+...  .+..|+++|+||+|+.+  .+..++..++.        ++||++|.|++++|++
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~  161 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC  161 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence            999999999999999999988543  35799999999999976  34555555544        6699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.++
T Consensus       162 l~~~~~  167 (199)
T cd04110         162 ITELVL  167 (199)
T ss_pred             HHHHHH
Confidence            998775

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04124 RabL2 RabL2 subfamily

Probab=99.96  E-value=8.7e-28  Score=171.16  Aligned_cols=129  Identities=19%  Similarity=0.262  Sum_probs=109.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|.+|||||||++++..                     .+...+.+++||++|++.+..+++.+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999976                     2334577899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhhhccCCCHHHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      |++++.+++.+..|+..+.+.  .++.|+++|+||+|+..... ++...+        .++||++|.|++++|+.+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSVT-QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA  157 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhHH-HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999999999888543  35799999999999864322 222222        2669999999999999999887


Q ss_pred             h
Q psy11510        170 S  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       158 ~  158 (161)
T cd04124         158 V  158 (161)
T ss_pred             H
Confidence            5

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01864 Rab19 Rab19 subfamily

Probab=99.96  E-value=1.3e-27  Score=170.65  Aligned_cols=131  Identities=26%  Similarity=0.406  Sum_probs=110.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      +.+||+++|++|+|||||++++..                     .++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999975                     22233688999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f~~  164 (171)
                      |||++++.+|+.+..|+..+... ...++|+++|+||+|+.+  .+..+++....         ++||++|.|++++|+.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~  160 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL  160 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999988653 246899999999999975  33444444443         6699999999999999


Q ss_pred             HHHH
Q psy11510        165 LLNE  168 (171)
Q Consensus       165 l~~~  168 (171)
                      +++.
T Consensus       161 l~~~  164 (165)
T cd01864         161 MATE  164 (165)
T ss_pred             HHHh
Confidence            9875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.96  E-value=1.1e-27  Score=172.85  Aligned_cols=133  Identities=35%  Similarity=0.529  Sum_probs=115.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      .++.+||+++|++|+|||||++++..                .....+.+.+||+||++.+...|..+++++|++++|+|
T Consensus        12 ~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D   91 (174)
T cd04153          12 PRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID   91 (174)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence            34578999999999999999999975                33346789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l  165 (171)
                      +++++++.....++..+++.....++|+++++||+|+.+..+.+++.+.+             ++||++|.|++++|+++
T Consensus        92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l  171 (174)
T cd04153          92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWI  171 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHH
Confidence            99999999988888888776555689999999999998766666654443             57999999999999999


Q ss_pred             HH
Q psy11510        166 LN  167 (171)
Q Consensus       166 ~~  167 (171)
                      ++
T Consensus       172 ~~  173 (174)
T cd04153         172 AS  173 (174)
T ss_pred             hc
Confidence            75

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04134 Rho3 Rho3 subfamily

Probab=99.96  E-value=8.2e-28  Score=175.69  Aligned_cols=131  Identities=21%  Similarity=0.275  Sum_probs=109.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      .||+++|++|||||||++++..                    .++..+.+++||++|++.+..+++.+++++|++++|||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            4899999999999999999987                    23345788999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCC--------------CHHHHHHH---------HHhhhcc
Q psy11510         99 SADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGAL--------------TPEDIKNV---------SEKATKV  154 (171)
Q Consensus        99 ~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~--------------~~~~~~~~---------~~~sa~~  154 (171)
                      ++++++|+.+. .|+..+...  .++.|+++|+||+|+.+..              ..++...+         .++||++
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            99999999986 588777643  3589999999999997532              22333322         2779999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q psy11510        155 KLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       155 ~~~v~~~f~~l~~~i~~  171 (171)
                      |.|++++|+++++.+++
T Consensus       159 ~~~v~e~f~~l~~~~~~  175 (189)
T cd04134         159 NRGVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988763

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04109 Rab28 Rab28 subfamily

Probab=99.96  E-value=1.7e-27  Score=177.33  Aligned_cols=132  Identities=17%  Similarity=0.248  Sum_probs=111.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cc-cCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +||+++|++|||||||++++..                     ++ ...+.+++||++|++.+..++..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999986                     11 2357889999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEER--LAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      ||++++++|+.+..|+..+.+...  ..++|+++|+||+|+.+  .+..++...+.        ++||++|+|++++|+.
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999888865432  24578999999999964  45555554444        5699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       161 l~~~l~  166 (215)
T cd04109         161 LAAELL  166 (215)
T ss_pred             HHHHHH
Confidence            998764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=2.4e-27  Score=172.45  Aligned_cols=134  Identities=30%  Similarity=0.545  Sum_probs=114.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc------------------c---ccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM------------------I---MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~------------------~---~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      +.+||+++|.+|||||||++++..                  .   +...+.+.+||++|++++..+|+.+++++|++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            468999999999999999999976                  1   2245789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccCCCHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVKLNKQSK  161 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~~~v~~~  161 (171)
                      |+|++++.+++.+..|+..+.......++|+++|+||+|+.+..+.+++....              ++||++|.|++++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  161 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG  161 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence            99999999999998888888765445689999999999998766655554432              5799999999999


Q ss_pred             HHHHHHHHh
Q psy11510        162 FQVLLNEVS  170 (171)
Q Consensus       162 f~~l~~~i~  170 (171)
                      |+.+++.+.
T Consensus       162 ~~~l~~~l~  170 (183)
T cd04152         162 LEKLYEMIL  170 (183)
T ss_pred             HHHHHHHHH
Confidence            999998764

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.96  E-value=1.6e-27  Score=171.44  Aligned_cols=131  Identities=20%  Similarity=0.310  Sum_probs=109.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         40 VVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      ||+++|..|||||||++++..                     ..+..+.+++||++|++++..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            799999999999999999998                     22334678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHH--------HHhhhccCCCHHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL----TPEDIKNV--------SEKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~--------~~~sa~~~~~v~~~f~~l~  166 (171)
                      ++++++++.+..|+..+++.....+.|+++|+||.|+.+..    ..++...+        .++||++|.|++++|+.++
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999998766544568899999999996521    23322222        2679999999999999998


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       162 ~~~~  165 (170)
T cd04108         162 ALTF  165 (170)
T ss_pred             HHHH
Confidence            8764

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=1.8e-27  Score=169.14  Aligned_cols=130  Identities=22%  Similarity=0.389  Sum_probs=117.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         40 VVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      ||+++|+.|||||||++++.+                     .+...+.+.+||++|++++..++..+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            799999999999999999998                     44567889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      +++++||+.+..|+..+..... .++|+++++||+|+.+  .++.+++.++.        ++||+++.|+.++|..+++.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999999865543 5799999999999986  78888877776        67999999999999999998


Q ss_pred             Hh
Q psy11510        169 VS  170 (171)
Q Consensus       169 i~  170 (171)
                      +.
T Consensus       160 i~  161 (162)
T PF00071_consen  160 IL  161 (162)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04128 Spg1 Spg1p

Probab=99.95  E-value=1.2e-27  Score=173.99  Aligned_cols=130  Identities=18%  Similarity=0.262  Sum_probs=107.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|+.|||||||++++..                     .++..+.+.+||++|+++|..+++.+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            5899999999999999999976                     2334578899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-------HHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-------PEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-------~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      |++++.+|+++..|+..+.+.. ....| ++|+||+|+....+       .++..++.        ++||++|.|++++|
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf  158 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF  158 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999886542 24567 67899999953211       22233322        67999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +++++.++
T Consensus       159 ~~l~~~l~  166 (182)
T cd04128         159 KIVLAKAF  166 (182)
T ss_pred             HHHHHHHH
Confidence            99998765

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04113 Rab4 Rab4 subfamily

Probab=99.95  E-value=1.7e-27  Score=169.17  Aligned_cols=130  Identities=20%  Similarity=0.312  Sum_probs=111.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++.+                     ++...+.+++||++|++.+...++.+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            5899999999999999999986                     2333567899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++.+|+.+..|+..+... ..+++|+++|+||+|+..  .++.+++..+.        ++||+++.|++++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~  159 (161)
T cd04113          81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999998887433 347899999999999965  35555655554        6699999999999999987


Q ss_pred             HH
Q psy11510        168 EV  169 (171)
Q Consensus       168 ~i  169 (171)
                      .+
T Consensus       160 ~~  161 (161)
T cd04113         160 SI  161 (161)
T ss_pred             hC
Confidence            64

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01868 Rab11_like Rab11-like

Probab=99.95  E-value=2.7e-27  Score=168.77  Aligned_cols=133  Identities=25%  Similarity=0.385  Sum_probs=112.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++..                     .+...+.+.+||++|++++..+++.++++++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            458999999999999999999986                     22334678999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||++++.+++.+..|+..+.+.. ..++|+++|+||+|+.+  ....++...+.        ++||++|.|++++|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  160 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL  160 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            999999999999999999886543 34699999999999975  34555555544        56999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.++
T Consensus       161 ~~~i~  165 (165)
T cd01868         161 LTEIY  165 (165)
T ss_pred             HHHhC
Confidence            98764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01866 Rab2 Rab2 subfamily

Probab=99.95  E-value=3.3e-27  Score=169.23  Aligned_cols=133  Identities=23%  Similarity=0.349  Sum_probs=115.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|.+|||||||++++.+                     .+...+.+.+||++|++++..++..+++++|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            468999999999999999999997                     23345788999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |+|++++.+++.+..|+..+.... .+++|+++|+||.|+.+  .++.++...+.        +.||++|+|++++|..+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~  161 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT  161 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999886542 46899999999999974  45666665554        66999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.++
T Consensus       162 ~~~~~  166 (168)
T cd01866         162 AKEIY  166 (168)
T ss_pred             HHHHH
Confidence            98875

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>KOG0091|consensus

Probab=99.95  E-value=1.7e-27  Score=165.15  Aligned_cols=136  Identities=21%  Similarity=0.387  Sum_probs=119.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ...++.++||++-+|||+|++.|..                      -++..+++++|||+||++|+++..+|+++.-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            3678999999999999999999997                      456789999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCC-CeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAG-ATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      ++|||.++..+|+.++.|+++..-....|+ +-..+||+|+|+..  .++.+|.+++.        |+||++|.||++.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            999999999999999999988643333344 44678899999976  68888888876        88999999999999


Q ss_pred             HHHHHHHhC
Q psy11510        163 QVLLNEVSN  171 (171)
Q Consensus       163 ~~l~~~i~~  171 (171)
                      ..++++|++
T Consensus       166 ~mlaqeIf~  174 (213)
T KOG0091|consen  166 DMLAQEIFQ  174 (213)
T ss_pred             HHHHHHHHH
Confidence            999999863

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=1.8e-27  Score=170.68  Aligned_cols=128  Identities=30%  Similarity=0.488  Sum_probs=111.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR  103 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~  103 (171)
                      +|+++|++|||||||++++.+                +...+..+++||++|++.++.+|..+++++|++++|||+++..
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~   80 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD   80 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence            489999999999999999987                3345678999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------------HhhhccC------CCHHHH
Q psy11510        104 RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------------EKATKVK------LNKQSK  161 (171)
Q Consensus       104 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------------~~sa~~~------~~v~~~  161 (171)
                      +++++..|+..++......++|+++|+||+|+++..+.+++.+..                ++||++|      .|+.+.
T Consensus        81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~  160 (167)
T cd04161          81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG  160 (167)
T ss_pred             HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence            999999999999876555689999999999998876655554442                4689998      899999


Q ss_pred             HHHHHH
Q psy11510        162 FQVLLN  167 (171)
Q Consensus       162 f~~l~~  167 (171)
                      |+||+.
T Consensus       161 ~~wl~~  166 (167)
T cd04161         161 LRWLLA  166 (167)
T ss_pred             HHHHhc
Confidence            999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.95  E-value=2.1e-27  Score=169.92  Aligned_cols=126  Identities=33%  Similarity=0.526  Sum_probs=107.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK  102 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~  102 (171)
                      .|+++|++|||||||++++.+                 ++..++.+.+||++|++.++.+|+.+++++|++++|||++++
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~   80 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS   80 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence            379999999999999999997                 344568899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------------HhhhccCCCHHHHH
Q psy11510        103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------------EKATKVKLNKQSKF  162 (171)
Q Consensus       103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------------~~sa~~~~~v~~~f  162 (171)
                      .++...+.|+..++...  +++|+++|+||+|+.+....+++....                    ++||++++||+++|
T Consensus        81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~  158 (164)
T cd04162          81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL  158 (164)
T ss_pred             HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence            99999999999886543  689999999999998765555443332                    44666699999999


Q ss_pred             HHHHH
Q psy11510        163 QVLLN  167 (171)
Q Consensus       163 ~~l~~  167 (171)
                      +.++.
T Consensus       159 ~~~~~  163 (164)
T cd04162         159 SQLIN  163 (164)
T ss_pred             HHHhc
Confidence            98864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.95  E-value=3e-27  Score=169.76  Aligned_cols=132  Identities=18%  Similarity=0.306  Sum_probs=112.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchh-HHHHHhhhCCCEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLR-SYWRNYFESTDGLIW   95 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~ii~   95 (171)
                      .+||+++|++|||||||++++..                     .++..+.+++||++|+++++ .+++.+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            58999999999999999999976                     23345789999999999887 578899999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhcc---CCCHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKV---KLNKQSKF  162 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~---~~~v~~~f  162 (171)
                      |||++++.+|+.+..|+..+.......++|+++|+||+|+.+  .++.++..++.        ++||++   +.|++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998887655456899999999999975  34555554443        669999   99999999


Q ss_pred             HHHHHHH
Q psy11510        163 QVLLNEV  169 (171)
Q Consensus       163 ~~l~~~i  169 (171)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9999875

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.95  E-value=1.6e-27  Score=169.63  Aligned_cols=126  Identities=15%  Similarity=0.263  Sum_probs=104.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      +||+++|+.|||||||+.++..                   +++..+.+.+||++|++.     ..+++.+|++++|||+
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~   75 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL   75 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence            5899999999999999999865                   223347799999999975     3467889999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH---------HhhhccCCCHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS---------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l~  166 (171)
                      +++.||+++..|+..+......+++|+++|+||.|+..    .++.++.+++.         ++||++|.||+++|+.++
T Consensus        76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~  155 (158)
T cd04103          76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAA  155 (158)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999997765557899999999999842    45555543332         679999999999999998


Q ss_pred             HHH
Q psy11510        167 NEV  169 (171)
Q Consensus       167 ~~i  169 (171)
                      +.+
T Consensus       156 ~~~  158 (158)
T cd04103         156 QKI  158 (158)
T ss_pred             hhC
Confidence            753

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.95  E-value=3.2e-27  Score=171.92  Aligned_cols=134  Identities=27%  Similarity=0.472  Sum_probs=118.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      .++.++|+++|++|||||||++++.+                ....++++.+||++|++.++..|..++.++|++++|+|
T Consensus        14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD   93 (184)
T smart00178       14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD   93 (184)
T ss_pred             ccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence            46789999999999999999999987                22345778999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------------HhhhccCCCH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------------EKATKVKLNK  158 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------------~~sa~~~~~v  158 (171)
                      ++++.++.....++..+++.....++|+++|+||+|++..++.+++++.+                    ++||++|+|+
T Consensus        94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~  173 (184)
T smart00178       94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY  173 (184)
T ss_pred             CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCCh
Confidence            99999999999899888776555789999999999998888888877654                    4589999999


Q ss_pred             HHHHHHHHHH
Q psy11510        159 QSKFQVLLNE  168 (171)
Q Consensus       159 ~~~f~~l~~~  168 (171)
                      +++++++.+.
T Consensus       174 ~~~~~wl~~~  183 (184)
T smart00178      174 GEGFKWLSQY  183 (184)
T ss_pred             HHHHHHHHhh
Confidence            9999999865

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04140 ARHI_like ARHI subfamily

Probab=99.95  E-value=3.5e-27  Score=168.52  Aligned_cols=129  Identities=19%  Similarity=0.196  Sum_probs=107.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +||+++|++|||||||++++.+                    .+...+.+.+||++|++++..++..+++.+|++++|||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d   81 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence            7999999999999999999987                    12234678999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEE--RLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      ++++++|+.+..|+..+.+..  ..+++|+++|+||+|+..  .+..++...+.        ++||++|.|++++|++++
T Consensus        82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~  161 (165)
T cd04140          82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELL  161 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHH
Confidence            999999999998887664322  236799999999999965  34444433332        679999999999999997


Q ss_pred             H
Q psy11510        167 N  167 (171)
Q Consensus       167 ~  167 (171)
                      +
T Consensus       162 ~  162 (165)
T cd04140         162 N  162 (165)
T ss_pred             h
Confidence            5

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>PLN03110 Rab GTPase; Provisional

Probab=99.95  E-value=2.9e-27  Score=176.27  Aligned_cols=135  Identities=22%  Similarity=0.360  Sum_probs=115.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ....+||+++|++|||||||++++.+                     .++..+.+++||++|++++..++..++++++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            44679999999999999999999987                     234457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+|+.+..|+..+.+. ...++|+++|+||+|+.+  .++.++...+.        ++||++|.|++++|+
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~  167 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ  167 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999888543 336899999999999865  34555555443        679999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       168 ~l~~~i~  174 (216)
T PLN03110        168 TILLEIY  174 (216)
T ss_pred             HHHHHHH
Confidence            9998764

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=3.2e-27  Score=167.60  Aligned_cols=129  Identities=27%  Similarity=0.418  Sum_probs=108.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD  101 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~  101 (171)
                      +|+++|++|||||||++++.+                  ....++.+.+||+||++++..+|..+++++|++++|+|+++
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~   80 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD   80 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence            589999999999999999997                  12245678999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510        102 KRRLEDCARELHELLQEER--LAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       102 ~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~  166 (171)
                      +.++.....|+..+++...  ..++|+++|+||+|+.+....+++...+             ++||++|.|++++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157          81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHh
Confidence            9999988888888876432  2579999999999998755544443322             579999999999999987


Q ss_pred             HH
Q psy11510        167 NE  168 (171)
Q Consensus       167 ~~  168 (171)
                      ++
T Consensus       161 ~~  162 (162)
T cd04157         161 AQ  162 (162)
T ss_pred             cC
Confidence            53

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.95  E-value=4.5e-27  Score=171.10  Aligned_cols=130  Identities=18%  Similarity=0.261  Sum_probs=109.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cc-cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++.+                    .. +..+.+.+||++|++++..+++.+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            5899999999999999999997                    22 44678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC------CCHHHHHHHH---------HhhhccCCCHHHH
Q psy11510         98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA------LTPEDIKNVS---------EKATKVKLNKQSK  161 (171)
Q Consensus        98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~~~---------~~sa~~~~~v~~~  161 (171)
                      |++++.+|+.+. .|+..+...  .++.|+++|+||+|+...      +..++..++.         ++||++|.|++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            999999999986 477766432  358999999999998652      3455554443         6699999999999


Q ss_pred             HHHHHHHHh
Q psy11510        162 FQVLLNEVS  170 (171)
Q Consensus       162 f~~l~~~i~  170 (171)
                      |+.+++.++
T Consensus       159 f~~l~~~~~  167 (187)
T cd04132         159 FDTAIEEAL  167 (187)
T ss_pred             HHHHHHHHH
Confidence            999998775

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04112 Rab26 Rab26 subfamily

Probab=99.95  E-value=4.9e-27  Score=171.81  Aligned_cols=131  Identities=26%  Similarity=0.429  Sum_probs=110.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +||+++|++|||||||++++..                      +++..+.+++||+||++++...+..+++++|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            5899999999999999999876                      223346789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      ||++++++|+++..|+..+.+. ...++|+++|+||+|+..  .+..++.....        ++||++|.|++++|+.++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~  159 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA  159 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999888654 335799999999999963  34444444443        679999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       160 ~~~~  163 (191)
T cd04112         160 KELK  163 (191)
T ss_pred             HHHH
Confidence            8764

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=5.6e-27  Score=166.26  Aligned_cols=128  Identities=37%  Similarity=0.659  Sum_probs=110.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK  102 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~  102 (171)
                      +|+++|++|||||||++++..                + ......+.+||++|++.+...|..+++++|++++|+|++++
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~   80 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE   80 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence            589999999999999999987                1 12356899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccCCCHHHHHHHHHH
Q psy11510        103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      .++.....|+..+++.....+.|+++|+||+|+.+..+.+++...+              ++||++|+|++++|+.+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156          81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            9999999999998876555789999999999997765555554332              4799999999999999865

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04125 RabA_like RabA-like subfamily

Probab=99.95  E-value=5.8e-27  Score=170.86  Aligned_cols=131  Identities=24%  Similarity=0.374  Sum_probs=111.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|+.|||||||++++.+                     +++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            5899999999999999999998                     2234567899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++++|+.+..|+..+.... ..+.|+++|+||+|+.+  .++.++...+.        ++||++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999998885432 34689999999999974  34554444433        6799999999999999998


Q ss_pred             HHh
Q psy11510        168 EVS  170 (171)
Q Consensus       168 ~i~  170 (171)
                      .+.
T Consensus       160 ~~~  162 (188)
T cd04125         160 LII  162 (188)
T ss_pred             HHH
Confidence            875

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.95  E-value=3.2e-27  Score=169.75  Aligned_cols=129  Identities=15%  Similarity=0.218  Sum_probs=108.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC
Q psy11510         41 VSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA  100 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~  100 (171)
                      |+++|++|||||||++++..                    .++..+.+.+||++|++.+..+++.+++++|++++|||++
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~   80 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD   80 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence            68999999999999999987                    3344567999999999999999999999999999999999


Q ss_pred             ChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------HhhhccCC
Q psy11510        101 DKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EKATKVKL  156 (171)
Q Consensus       101 ~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~sa~~~~  156 (171)
                      ++++|+.+. .|+..+...  .+++|+++|+||+|+...              ++.++...+.         ++||++|.
T Consensus        81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            999999986 577777543  368999999999999652              3444433333         66999999


Q ss_pred             CHHHHHHHHHHHHhC
Q psy11510        157 NKQSKFQVLLNEVSN  171 (171)
Q Consensus       157 ~v~~~f~~l~~~i~~  171 (171)
                      |++++|+.+++.+++
T Consensus       159 ~v~~lf~~l~~~~~~  173 (174)
T smart00174      159 GVREVFEEAIRAALN  173 (174)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999998764

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04151 Arl1 Arl1 subfamily

Probab=99.95  E-value=6.2e-27  Score=166.09  Aligned_cols=128  Identities=41%  Similarity=0.700  Sum_probs=108.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR  103 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~  103 (171)
                      ||+++|+++||||||++++..                .+..++.+++||+||++.++.+|+.+++.+|++++|+|++++.
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~   80 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD   80 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence            689999999999999999965                3345678999999999999999999999999999999999998


Q ss_pred             hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH-------------HHhhhccCCCHHHHHHHHHH
Q psy11510        104 RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV-------------SEKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       104 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-------------~~~sa~~~~~v~~~f~~l~~  167 (171)
                      ++....+++..+++.....++|+++|+||+|+.++...+++...             .++||++|.|++++|+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151          81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            88887787877766555568999999999999875544444332             26799999999999999976

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=7.5e-27  Score=170.31  Aligned_cols=140  Identities=27%  Similarity=0.489  Sum_probs=119.6

Q ss_pred             ccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         30 RHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        30 ~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+....+..||+++|++|||||||++++.+                +...+..+.+||+||++.++..|..+++++|++
T Consensus        11 ~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i   90 (190)
T cd00879          11 SSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGI   90 (190)
T ss_pred             HHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            3334456789999999999999999999986                233467889999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH------------------------H
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS------------------------E  149 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------------------------~  149 (171)
                      ++|+|+++..+++....|+..+++.....+.|+++++||+|+..+++.++++..+                        +
T Consensus        91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (190)
T cd00879          91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFM  170 (190)
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEE
Confidence            9999999999999988999998876555789999999999998777777766543                        5


Q ss_pred             hhhccCCCHHHHHHHHHHHH
Q psy11510        150 KATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       150 ~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +||++|.|++++|+++++.+
T Consensus       171 ~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         171 CSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             eEecCCCChHHHHHHHHhhC
Confidence            59999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.95  E-value=1.4e-26  Score=164.63  Aligned_cols=131  Identities=21%  Similarity=0.325  Sum_probs=113.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      ++||+++|++|||||||++++.+                     .+...+.+.+||++|++++...++.+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999998                     333457899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      +|++++++++....|+..+.... .++.|+++++||+|+..  ..+.++.....        ++||++|.|+.++|++++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA  159 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            99999999999999999986654 37899999999999874  34555555544        669999999999999998


Q ss_pred             HHH
Q psy11510        167 NEV  169 (171)
Q Consensus       167 ~~i  169 (171)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd01860         160 KKL  162 (163)
T ss_pred             HHh
Confidence            875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04177 RSR1 RSR1 subgroup

Probab=99.95  E-value=1.3e-26  Score=166.13  Aligned_cols=133  Identities=17%  Similarity=0.256  Sum_probs=112.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      .+||+++|++|||||||++++.+                    .+...+.+++||++|+++|..+++.+++.++++++||
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            37899999999999999999986                    2233467899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHH---------HHhhhccCCCHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNV---------SEKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~---------~~~sa~~~~~v~~~f~~l~  166 (171)
                      |++++++++.+..|...+.+.....+.|+++++||.|+.+  ....++....         .++||++|.|+.++|++++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999988887654456899999999999965  3344443322         2779999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      .+++
T Consensus       161 ~~~~  164 (168)
T cd04177         161 RQII  164 (168)
T ss_pred             HHHh
Confidence            7653

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=5.1e-27  Score=172.93  Aligned_cols=124  Identities=16%  Similarity=0.301  Sum_probs=106.8

Q ss_pred             EeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510         44 LRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK  102 (171)
Q Consensus        44 iG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~  102 (171)
                      +|..|||||||++++..                     .+...+.+++||++|+++|..+++.+++++|++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999986                     234568899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      .+|+.+..|+..+.+..  +++|+++|+||+|+.. .+..++. .+.        ++||++|.||+++|+++++.++
T Consensus        81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~  154 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-TFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI  154 (200)
T ss_pred             HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            99999999999996542  5899999999999865 3444433 222        7799999999999999998774

Ran is involved in the active transport of proteins through nuclear pores.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.95  E-value=1.1e-26  Score=165.87  Aligned_cols=128  Identities=36%  Similarity=0.607  Sum_probs=110.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +|+++|++|||||||++++..                       ...++..+.+||+||++.+..++..+++.+|++++|
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v   80 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV   80 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence            589999999999999999864                       223457899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------------HhhhccCCCHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---------------EKATKVKLNKQSK  161 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------------~~sa~~~~~v~~~  161 (171)
                      +|++++.++.....|+..+++.....++|+++++||+|+.+....+++.+.+               +.||++|.|++++
T Consensus        81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  160 (167)
T cd04160          81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG  160 (167)
T ss_pred             EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence            9999999999999999998876556789999999999998766666555443               5699999999999


Q ss_pred             HHHHHH
Q psy11510        162 FQVLLN  167 (171)
Q Consensus       162 f~~l~~  167 (171)
                      |++|++
T Consensus       161 ~~~l~~  166 (167)
T cd04160         161 IEWLVE  166 (167)
T ss_pred             HHHHhc
Confidence            999875

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01862 Rab7 Rab7 subfamily

Probab=99.95  E-value=1.9e-26  Score=165.16  Aligned_cols=132  Identities=20%  Similarity=0.322  Sum_probs=111.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++.+                     ..+..+.+++||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            5899999999999999999986                     2234567889999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f~  163 (171)
                      |++++.+++....|...++....   ..++|+++|+||+|+..  ..+.++...+.         ++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999888887765433   23799999999999973  44566655554         459999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.++
T Consensus       161 ~i~~~~~  167 (172)
T cd01862         161 TIARKAL  167 (172)
T ss_pred             HHHHHHH
Confidence            9998775

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.95  E-value=1.4e-26  Score=164.48  Aligned_cols=128  Identities=18%  Similarity=0.329  Sum_probs=109.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cc--cCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IM--TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      +||+++|++|+|||||++++..                     ..  ...+.+++||+||++++..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            5899999999999999999996                     11  345789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||++++++|+.+..|+..+...  ..++|+++|+||+|+..  .++.+++.++.        ++|+++|.|++++|+.+
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  158 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYL  158 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999998887543  36899999999999865  45555554444        66999999999999999


Q ss_pred             HHH
Q psy11510        166 LNE  168 (171)
Q Consensus       166 ~~~  168 (171)
                      ++.
T Consensus       159 ~~~  161 (162)
T cd04106         159 AEK  161 (162)
T ss_pred             HHh
Confidence            764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PLN03108 Rab family protein; Provisional

Probab=99.95  E-value=1.7e-26  Score=171.40  Aligned_cols=134  Identities=24%  Similarity=0.350  Sum_probs=114.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .+.+||+++|+.|||||||++++..                     +....+.+.+||++|++.+..++..+++++|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            4579999999999999999999986                     1223467899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++.+|+.+..|+..+.... .++.|+++|+||+|+.+  .++.++..++.        ++||+++.|++++|++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~  162 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK  162 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999988875432 36899999999999976  45666655554        6699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.++
T Consensus       163 l~~~~~  168 (210)
T PLN03108        163 TAAKIY  168 (210)
T ss_pred             HHHHHH
Confidence            998875

>KOG0088|consensus

Probab=99.95  E-value=3.1e-27  Score=163.16  Aligned_cols=135  Identities=22%  Similarity=0.308  Sum_probs=117.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      +...+|++++|..-+|||||+-++..                     +......++||||+||++|..+-+-||++.++.
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            45679999999999999999999987                     444567899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||+++.++|+.+++|..++..- .-..+.+++|+||+|+.+  .+..++...+.        ++||+.|.||.++|+
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe  168 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE  168 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence            9999999999999999999998543 235789999999999986  56666666554        779999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+.+.++
T Consensus       169 ~Lt~~Mi  175 (218)
T KOG0088|consen  169 SLTAKMI  175 (218)
T ss_pred             HHHHHHH
Confidence            9987654

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.95  E-value=1.6e-26  Score=175.40  Aligned_cols=131  Identities=18%  Similarity=0.267  Sum_probs=112.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +||+++|++|||||||++++..                    +++..+.+++||++|++.|..++..++.++|++++|||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd   80 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS   80 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence            5899999999999999999975                    23345788999999999999999989999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcc--------ccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHH
Q psy11510         99 SADKRRLEDCARELHELLQEE--------RLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQ  159 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~--------~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~  159 (171)
                      +++.++|+++..|+..+.+..        ...++|+++|+||+|+..  .+..+++.+..         ++||++|.|++
T Consensus        81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~  160 (247)
T cd04143          81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLD  160 (247)
T ss_pred             CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHH
Confidence            999999999999999886531        235799999999999974  56666666553         57999999999


Q ss_pred             HHHHHHHHHH
Q psy11510        160 SKFQVLLNEV  169 (171)
Q Consensus       160 ~~f~~l~~~i  169 (171)
                      ++|+.+++..
T Consensus       161 elf~~L~~~~  170 (247)
T cd04143         161 EMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHh
Confidence            9999998753

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.95  E-value=2.3e-26  Score=163.33  Aligned_cols=131  Identities=24%  Similarity=0.410  Sum_probs=112.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++.+                     .++..+.+++||+||++.+...+..+++++|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            5899999999999999999987                     2233468899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++.+++.+..|+..+.... .+++|+++|+||+|+..  ..+.+.+..+.        ++|+++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175       81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999988886543 25899999999999875  34555555554        6699999999999999998


Q ss_pred             HHh
Q psy11510        168 EVS  170 (171)
Q Consensus       168 ~i~  170 (171)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00175      160 EIL  162 (164)
T ss_pred             HHh
Confidence            765

Rab GTPases are implicated in vesicle trafficking.

>cd01863 Rab18 Rab18 subfamily

Probab=99.95  E-value=2.5e-26  Score=163.05  Aligned_cols=130  Identities=23%  Similarity=0.350  Sum_probs=112.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++.+                     .....+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            5899999999999999999997                     2233578999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      |++++++|+.+..|+..+......++.|+++|+||+|+.. ....++..++.        ++|+++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            9999999999999988887665567899999999999974 44555555554        66999999999999998865

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01861 Rab6 Rab6 subfamily

Probab=99.95  E-value=2.7e-26  Score=162.77  Aligned_cols=129  Identities=18%  Similarity=0.354  Sum_probs=109.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++.+                     .++..+.+++||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            4899999999999999999987                     1223467899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++++|+.+..|+..+.... ..+.|+++++||+|+.+  ....++.....        ++||+++.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999999886543 24799999999999954  33444444443        5699999999999999987


Q ss_pred             H
Q psy11510        168 E  168 (171)
Q Consensus       168 ~  168 (171)
                      .
T Consensus       160 ~  160 (161)
T cd01861         160 A  160 (161)
T ss_pred             h
Confidence            5

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.94  E-value=4.1e-26  Score=162.39  Aligned_cols=129  Identities=19%  Similarity=0.292  Sum_probs=108.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-----------------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-----------------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-----------------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      +||+++|++|||||||++++..                       . ....+.+.+||++|++.+..+++.+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            5899999999999999999963                       1 235688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA--LTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++.+++.+..|+..+.+..  .++|+++|+||+|+.+.  +...+...+.        ++||++|.|++++|+.
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  158 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFES  158 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHH
Confidence            9999999999999999998886542  57999999999999652  3443322222        6799999999999999


Q ss_pred             HHHHH
Q psy11510        165 LLNEV  169 (171)
Q Consensus       165 l~~~i  169 (171)
                      +++.+
T Consensus       159 l~~~~  163 (164)
T cd04101         159 LARAF  163 (164)
T ss_pred             HHHHh
Confidence            99875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0071|consensus

Probab=99.94  E-value=1.4e-26  Score=156.83  Aligned_cols=134  Identities=34%  Similarity=0.614  Sum_probs=126.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      ..++++|+.+|..++||||+++++..                +.+.++.+++||++|++..++.|..||....++|||+|
T Consensus        14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D   93 (180)
T KOG0071|consen   14 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD   93 (180)
T ss_pred             CcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence            56799999999999999999999997                67889999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l  165 (171)
                      +.+.+.+++.++.+..++++..+.+.|++|.+||+|++++..+.|+.+++             .+++.+|.+..+-|.++
T Consensus        94 sa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswl  173 (180)
T KOG0071|consen   94 SADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWL  173 (180)
T ss_pred             ccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998             44899999999999998


Q ss_pred             HHH
Q psy11510        166 LNE  168 (171)
Q Consensus       166 ~~~  168 (171)
                      ++.
T Consensus       174 snn  176 (180)
T KOG0071|consen  174 SNN  176 (180)
T ss_pred             Hhh
Confidence            764

>cd04135 Tc10 TC10 subfamily

Probab=99.94  E-value=1.9e-26  Score=165.69  Aligned_cols=130  Identities=13%  Similarity=0.181  Sum_probs=107.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +||+++|++|+|||||++++..                    .+...+.+.+||++|++.+...++.+++++|++++|||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~   80 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS   80 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence            5899999999999999999986                    22334668899999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhcc
Q psy11510         99 SADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATKV  154 (171)
Q Consensus        99 ~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~~  154 (171)
                      ++++.+|+.+. .|+..+...  .++.|+++|+||+|+.+              .++.++.....         ++||++
T Consensus        81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            99999999986 465555332  57899999999999854              23344433332         679999


Q ss_pred             CCCHHHHHHHHHHHHh
Q psy11510        155 KLNKQSKFQVLLNEVS  170 (171)
Q Consensus       155 ~~~v~~~f~~l~~~i~  170 (171)
                      |.|++++|+.+++.++
T Consensus       159 ~~gi~~~f~~~~~~~~  174 (174)
T cd04135         159 QKGLKTVFDEAILAIL  174 (174)
T ss_pred             CCCHHHHHHHHHHHhC
Confidence            9999999999998874

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04123 Rab21 Rab21 subfamily

Probab=99.94  E-value=4.4e-26  Score=161.36  Aligned_cols=130  Identities=25%  Similarity=0.347  Sum_probs=110.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|+|||||++++..                     ..+....+.+||++|++.+..+++.+++++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            5899999999999999999997                     2234567899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++++++.+..|+..+.... ..++|+++|+||+|+..  .+..+++.+..        ++|+++|.|++++|+++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMR-GNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999988885543 24799999999999975  34455554443        6699999999999999988


Q ss_pred             HH
Q psy11510        168 EV  169 (171)
Q Consensus       168 ~i  169 (171)
                      .+
T Consensus       160 ~~  161 (162)
T cd04123         160 RM  161 (162)
T ss_pred             Hh
Confidence            75

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.94  E-value=2.5e-26  Score=163.92  Aligned_cols=131  Identities=17%  Similarity=0.232  Sum_probs=106.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc-hhHHHHHhhhCCCEEEEEEe
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS-LRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~ii~v~d   98 (171)
                      ||+++|++|||||||++++..                    .++..+.+++||+||+++ +...+..+++.+|++++|||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d   80 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS   80 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence            689999999999999999864                    344456789999999985 34567788999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccC-CCHHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEER-LAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVK-LNKQSKFQVLL  166 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~-~~v~~~f~~l~  166 (171)
                      ++++++|+.+..|+..+..... ..+.|+++|+||+|+..  .++.++...+.        ++||++| .|++++|+.++
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~  160 (165)
T cd04146          81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELC  160 (165)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHH
Confidence            9999999999998887755332 45899999999999864  45555554444        6699999 59999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       161 ~~~~  164 (165)
T cd04146         161 REVR  164 (165)
T ss_pred             HHHh
Confidence            8763

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04142 RRP22 RRP22 subfamily

Probab=99.94  E-value=3.7e-26  Score=168.24  Aligned_cols=132  Identities=17%  Similarity=0.156  Sum_probs=105.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhH--------HHHHhhhC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRS--------YWRNYFES   89 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~   89 (171)
                      +||+++|.+|||||||++++.+                     .++..+.+++||++|.+.+..        .....+++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            5899999999999999999987                     122336788999999765421        12344789


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCC--CCCHHHHHHH---------HHhhhccCC
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEE--RLAGATLLVFANKQDIEG--ALTPEDIKNV---------SEKATKVKL  156 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~---------~~~sa~~~~  156 (171)
                      +|++++|||++++++|+.+..|+..+.+..  ...++|+++|+||+|+.+  .++.+++..+         .++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999998887653  246899999999999965  2444444333         266999999


Q ss_pred             CHHHHHHHHHHHHh
Q psy11510        157 NKQSKFQVLLNEVS  170 (171)
Q Consensus       157 ~v~~~f~~l~~~i~  170 (171)
                      |++++|+.+++.++
T Consensus       161 ~v~~lf~~i~~~~~  174 (198)
T cd04142         161 HILLLFKELLISAT  174 (198)
T ss_pred             CHHHHHHHHHHHhh
Confidence            99999999998775

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04118 Rab24 Rab24 subfamily

Probab=99.94  E-value=4.9e-26  Score=166.47  Aligned_cols=130  Identities=19%  Similarity=0.291  Sum_probs=109.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +||+++|.+|||||||++++..                      .++..+.+++||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            5899999999999999999986                      223345678999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC------CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG------ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~------~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      ||++++.+|+.+..|+..+...  .++.|+++|+||+|+.+      .+..+++..+.        ++||++|.|++++|
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  158 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF  158 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999888553  35799999999999854      22334444442        67999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.++
T Consensus       159 ~~i~~~~~  166 (193)
T cd04118         159 QKVAEDFV  166 (193)
T ss_pred             HHHHHHHH
Confidence            99998775

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.94  E-value=3.8e-26  Score=167.77  Aligned_cols=127  Identities=15%  Similarity=0.217  Sum_probs=103.2

Q ss_pred             eeEEEEEeCCCCcHHHHHH-HHhc---------------c--------------------ccCceEEEEEecCCccchhH
Q psy11510         38 VAVVSLLRNKNGGETLILK-KKKM---------------I--------------------MTFRFKLNIWDVGGQKSLRS   81 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~-~~~~---------------~--------------------~~~~~~~~i~d~~g~~~~~~   81 (171)
                      .+||+++|+.|||||||+. ++.+               +                    ++..+.+++|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 4431               1                    12257889999999975  3


Q ss_pred             HHHHhhhCCCEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC---------------------CC
Q psy11510         82 YWRNYFESTDGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG---------------------AL  139 (171)
Q Consensus        82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~---------------------~~  139 (171)
                      +.+.+++++|++++|||++++.||+.+. .|+..+...  .++.|+++|+||+|+.+                     .+
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V  157 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL  157 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence            4567899999999999999999999997 587777443  25799999999999853                     45


Q ss_pred             CHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510        140 TPEDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       140 ~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      +.++...+.        |+||++|.||+++|+.+++.
T Consensus       158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            666666665        77999999999999999875

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PLN03118 Rab family protein; Provisional

Probab=99.94  E-value=8.9e-26  Score=167.59  Aligned_cols=136  Identities=20%  Similarity=0.300  Sum_probs=111.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ....+||+++|.+|||||||++++..                    .+...+.+.+||+||++++..++..+++++|+++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            44579999999999999999999985                    2234578899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQE-ERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      +|||++++++|+.+..++...+.. ....+.|+++|+||+|+..  .+..++...+.        ++||++|.|++++|+
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~  170 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE  170 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999998644443332 2235689999999999975  34444444433        679999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       171 ~l~~~~~  177 (211)
T PLN03118        171 ELALKIM  177 (211)
T ss_pred             HHHHHHH
Confidence            9998764

>cd01892 Miro2 Miro2 subfamily

Probab=99.94  E-value=3.1e-26  Score=164.55  Aligned_cols=133  Identities=19%  Similarity=0.208  Sum_probs=109.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ++.+||+++|++|||||||++++..                      .++..+.+.+||++|++.+..++..+++++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            5789999999999999999999987                      223336788999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--C---CHHHHHHH------HHhhhccCCCHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA--L---TPEDIKNV------SEKATKVKLNKQSKF  162 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~---~~~~~~~~------~~~sa~~~~~v~~~f  162 (171)
                      ++|+|++++.+|+.+..|+..+..   ..++|+++|+||+|+.+.  .   ..+++.+.      .++||++|.|++++|
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf  158 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF  158 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence            999999999999999888876632   247999999999999642  1   12333222      367999999999999


Q ss_pred             HHHHHHHhC
Q psy11510        163 QVLLNEVSN  171 (171)
Q Consensus       163 ~~l~~~i~~  171 (171)
                      +.+++.+++
T Consensus       159 ~~l~~~~~~  167 (169)
T cd01892         159 TKLATAAQY  167 (169)
T ss_pred             HHHHHHhhC
Confidence            999988753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.94  E-value=6.3e-26  Score=160.62  Aligned_cols=128  Identities=38%  Similarity=0.675  Sum_probs=111.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR  103 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~  103 (171)
                      ||+++|.+|||||||++++.+                .....+.+.+||+||++.+...+..+++.+|++++|+|++++.
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~   80 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE   80 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence            689999999999999999988                2334678999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHH
Q psy11510        104 RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       104 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      ++.....++..+.......+.|+++|+||+|+......+++.+.+             +.||++|.|++++|+.++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878          81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            999999999988776556789999999999998755555555443             4699999999999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04155 Arl3 Arl3 subfamily

Probab=99.94  E-value=5.3e-26  Score=163.28  Aligned_cols=139  Identities=45%  Similarity=0.711  Sum_probs=117.1

Q ss_pred             cccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         29 LRHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        29 ~~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      +++.....+.++|+++|++|||||||++++.+                +...+..+.+||++|+..+...+..+++++|+
T Consensus         5 ~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155           5 LRKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             HHHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            44455556689999999999999999999998                22345678999999999998899999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQ  159 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~  159 (171)
                      +++|+|+++..++.....++..++......++|+++++||+|+.+....+++.+.+             ++||++|+|++
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            99999999999999888888888776555689999999999997755555554433             56999999999


Q ss_pred             HHHHHHHH
Q psy11510        160 SKFQVLLN  167 (171)
Q Consensus       160 ~~f~~l~~  167 (171)
                      ++|+++++
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999976

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.94  E-value=1.2e-25  Score=159.63  Aligned_cols=132  Identities=23%  Similarity=0.323  Sum_probs=112.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +||+++|++|||||||++++..                    .+...+.+.+||++|++.+...+..+++.++++++|+|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence            5899999999999999999976                    23356789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      ++++.+|..+..|+..+.......++|+++|+||+|+.+  ....++.....        ++||++|.|++++|+.+++.
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  160 (164)
T cd04139          81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVRE  160 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            999999999999999987764456899999999999976  33444333322        66999999999999999877


Q ss_pred             Hh
Q psy11510        169 VS  170 (171)
Q Consensus       169 i~  170 (171)
                      +.
T Consensus       161 ~~  162 (164)
T cd04139         161 IR  162 (164)
T ss_pred             HH
Confidence            53

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04114 Rab30 Rab30 subfamily

Probab=99.94  E-value=2.1e-25  Score=159.47  Aligned_cols=133  Identities=23%  Similarity=0.317  Sum_probs=109.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      +..+||+++|++|||||||++++..                     ..+..+.+.+||++|++.+...+..+++.+|+++
T Consensus         5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i   84 (169)
T cd04114           5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI   84 (169)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            4679999999999999999999984                     1233477899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+  .+..+....+.        ++||++|.|++++|+.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  163 (169)
T cd04114          85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD  163 (169)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence            999999999999999988777432 335799999999999975  23333222222        6699999999999999


Q ss_pred             HHHHH
Q psy11510        165 LLNEV  169 (171)
Q Consensus       165 l~~~i  169 (171)
                      +++.+
T Consensus       164 i~~~~  168 (169)
T cd04114         164 LACRL  168 (169)
T ss_pred             HHHHh
Confidence            99865

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.94  E-value=5.9e-26  Score=163.44  Aligned_cols=127  Identities=13%  Similarity=0.214  Sum_probs=105.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +||+++|++|+|||||+.++..                    +++..+.+.+||++|++.+..+++.+++++|++++|||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d   80 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS   80 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence            5899999999999999999975                    23345778999999999999999999999999999999


Q ss_pred             CCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhcc
Q psy11510         99 SADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATKV  154 (171)
Q Consensus        99 ~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~~  154 (171)
                      ++++.+|+.+. .|+..+...  .++.|+++|+||+|+..              .+..+++..+.         ++||++
T Consensus        81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999985 577777532  35799999999999853              23444444333         679999


Q ss_pred             CCCHHHHHHHHHH
Q psy11510        155 KLNKQSKFQVLLN  167 (171)
Q Consensus       155 ~~~v~~~f~~l~~  167 (171)
                      |.|++++|+.++-
T Consensus       159 ~~~v~~lf~~~~~  171 (173)
T cd04130         159 QKNLKEVFDTAIL  171 (173)
T ss_pred             CCCHHHHHHHHHh
Confidence            9999999998864

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01893 Miro1 Miro1 subfamily

Probab=99.94  E-value=2.1e-25  Score=159.59  Aligned_cols=131  Identities=15%  Similarity=0.151  Sum_probs=105.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      +||+++|.+|||||||++++..                   .....+.+.+||++|++.+...+..++..+|++++|||+
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~   80 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence            4899999999999999999987                   222457889999999998888888889999999999999


Q ss_pred             CChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHH----------HHHhhhccCCCHHHHHHH
Q psy11510        100 ADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKN----------VSEKATKVKLNKQSKFQV  164 (171)
Q Consensus       100 ~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~----------~~~~sa~~~~~v~~~f~~  164 (171)
                      +++.+|+.+. .|+..+...  .++.|+++|+||+|+.+...    .+++..          +.++||++|.|++++|+.
T Consensus        81 ~~~~s~~~~~~~~~~~i~~~--~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893          81 DRPSTLERIRTKWLPLIRRL--GVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence            9999999986 455555332  24899999999999976332    122211          226799999999999999


Q ss_pred             HHHHHhC
Q psy11510        165 LLNEVSN  171 (171)
Q Consensus       165 l~~~i~~  171 (171)
                      +.+.+++
T Consensus       159 ~~~~~~~  165 (166)
T cd01893         159 AQKAVLH  165 (166)
T ss_pred             HHHHhcC
Confidence            9887753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0081|consensus

Probab=99.94  E-value=2.7e-27  Score=163.51  Aligned_cols=136  Identities=19%  Similarity=0.307  Sum_probs=120.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------cccCceEEEEEecCCccchhHHHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------IMTFRFKLNIWDVGGQKSLRSYWR   84 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------~~~~~~~~~i~d~~g~~~~~~~~~   84 (171)
                      ....+|.+.+|++|+||||+++++..                              -....+.+++|||+||++|+++..
T Consensus         6 ydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT   85 (219)
T KOG0081|consen    6 YDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT   85 (219)
T ss_pred             HHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH
Confidence            34568999999999999999999987                              123458899999999999999999


Q ss_pred             HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhcc
Q psy11510         85 NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKV  154 (171)
Q Consensus        85 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~  154 (171)
                      .|++++.+++++||+++..||-++.+|+.++..+....++.+++++||+|+++  .++.++.....        |+||-+
T Consensus        86 AFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t  165 (219)
T KOG0081|consen   86 AFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT  165 (219)
T ss_pred             HHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence            99999999999999999999999999999998777778889999999999988  56666665554        889999


Q ss_pred             CCCHHHHHHHHHHHHh
Q psy11510        155 KLNKQSKFQVLLNEVS  170 (171)
Q Consensus       155 ~~~v~~~f~~l~~~i~  170 (171)
                      |.||++..+.+.+.++
T Consensus       166 g~Nv~kave~LldlvM  181 (219)
T KOG0081|consen  166 GTNVEKAVELLLDLVM  181 (219)
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999988876

>KOG0097|consensus

Probab=99.94  E-value=1.2e-25  Score=152.78  Aligned_cols=136  Identities=21%  Similarity=0.341  Sum_probs=122.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      .+..+|.+++|+.|+|||+|+.+|..                     +.+..+++++||+.||++|+....+|++.+.+.
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga   87 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   87 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence            45678999999999999999999987                     567789999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++...+++.+..|+.+... ...++..+++++||+|+..  .++-++...+.        +.||++|.||++.|-
T Consensus        88 lmvyditrrstynhlsswl~dar~-ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafl  166 (215)
T KOG0097|consen   88 LMVYDITRRSTYNHLSSWLTDARN-LTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFL  166 (215)
T ss_pred             eEEEEehhhhhhhhHHHHHhhhhc-cCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHH
Confidence            999999999999999999988743 4457888999999999976  57778887776        669999999999999


Q ss_pred             HHHHHHhC
Q psy11510        164 VLLNEVSN  171 (171)
Q Consensus       164 ~l~~~i~~  171 (171)
                      ..++.|++
T Consensus       167 e~akkiyq  174 (215)
T KOG0097|consen  167 ETAKKIYQ  174 (215)
T ss_pred             HHHHHHHH
Confidence            99998875

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.93  E-value=4e-25  Score=162.61  Aligned_cols=130  Identities=19%  Similarity=0.253  Sum_probs=109.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ||+++|..|||||||++++..                    ..+..+.+++||++|+..+..+++.++.++|++++|||+
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~   80 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV   80 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence            689999999999999999987                    122336889999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC---CCCHHHHHHH---------HHhhhccCCCHHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG---ALTPEDIKNV---------SEKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~---~~~~~~~~~~---------~~~sa~~~~~v~~~f~~l~~  167 (171)
                      +++.+++.+..|+..+.+.....++|+++|+||+|+..   .+..++..+.         .+.||++|.|++++|+++++
T Consensus        81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  160 (198)
T cd04147          81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR  160 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999888765556899999999999964   2333322221         25799999999999999998


Q ss_pred             HH
Q psy11510        168 EV  169 (171)
Q Consensus       168 ~i  169 (171)
                      .+
T Consensus       161 ~~  162 (198)
T cd04147         161 QA  162 (198)
T ss_pred             Hh
Confidence            65

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04148 RGK RGK subfamily

Probab=99.93  E-value=4.1e-25  Score=165.27  Aligned_cols=130  Identities=13%  Similarity=0.177  Sum_probs=105.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhh-CCCEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFE-STDGLIW   95 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~-~~~~ii~   95 (171)
                      +||+++|++|||||||++++..                      ++...+.+.+||++|++  ......++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            5899999999999999999963                      22345678899999998  233455666 8999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+.+
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999998887654446899999999999965  34444443332        67999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       159 ~~~~~  163 (221)
T cd04148         159 VRQIR  163 (221)
T ss_pred             HHHHH
Confidence            98763

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.93  E-value=5.8e-25  Score=158.96  Aligned_cols=132  Identities=17%  Similarity=0.284  Sum_probs=112.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      .||+++|++|||||||++++..                    .....+.+.+||+||++++...+..++..+|++++|||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   81 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS   81 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence            6899999999999999999997                    22234567899999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      +++..+++.+..|+..+++.....+.|+++|+||+|+..  ..+.++.....        ++||++|.|+.++|.++++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (180)
T cd04137          82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEE  161 (180)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            999999999999999998766557899999999999874  34444433332        56999999999999999987


Q ss_pred             Hh
Q psy11510        169 VS  170 (171)
Q Consensus       169 i~  170 (171)
                      +.
T Consensus       162 ~~  163 (180)
T cd04137         162 IE  163 (180)
T ss_pred             HH
Confidence            64

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.93  E-value=6.2e-25  Score=157.96  Aligned_cols=130  Identities=17%  Similarity=0.269  Sum_probs=105.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +.||+++|++|||||||++++..                    ++...+.+.+||++|++.+..+++.++.++|++++||
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            36899999999999999999997                    2234567899999999999988888899999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHH---------HHhhhc
Q psy11510         98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNV---------SEKATK  153 (171)
Q Consensus        98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~---------~~~sa~  153 (171)
                      |+++.++|+.+. .|+..+...  .++.|+++|+||+|+.+.              +..++.++.         .++||+
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  158 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK  158 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence            999999998886 466666432  358999999999998642              112222222         267999


Q ss_pred             cCCCHHHHHHHHHHHH
Q psy11510        154 VKLNKQSKFQVLLNEV  169 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~i  169 (171)
                      +|.|++++|+.++++.
T Consensus       159 ~~~~v~~lf~~l~~~~  174 (175)
T cd01870         159 TKEGVREVFEMATRAA  174 (175)
T ss_pred             cCcCHHHHHHHHHHHh
Confidence            9999999999998765

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00154 Rab Rab family

Probab=99.93  E-value=8.7e-25  Score=153.53  Aligned_cols=128  Identities=27%  Similarity=0.400  Sum_probs=110.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++.+                     .....+.+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            5899999999999999999987                     2234577899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--CCCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE--GALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~--~~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++++++.+..|+..+.... ..+.|+++++||+|+.  .....+++.++.        ++|++++.|++++|+.+++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999999999988886543 2579999999999995  455666666665        5699999999999998863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd00876 Ras Ras family

Probab=99.93  E-value=9.7e-25  Score=154.15  Aligned_cols=130  Identities=22%  Similarity=0.347  Sum_probs=111.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ||+++|++|||||||++++.+                    ..+..+.+++||+||++.+...+..+++.+|++++|||+
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   80 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI   80 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence            689999999999999999986                    233357889999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ++++++.++..|+..+.......++|+++|+||+|+..  ..+.+++..+.        +.|++++.|++++|+.+++.+
T Consensus        81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~i  160 (160)
T cd00876          81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVREI  160 (160)
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhhC
Confidence            99999999999998887665446899999999999976  34445554444        569999999999999998764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=1.4e-24  Score=152.62  Aligned_cols=128  Identities=32%  Similarity=0.579  Sum_probs=108.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK  102 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~  102 (171)
                      .|+++|++|||||||++++.+                 ...+.+.+.+||++|++.++..+..+++.+|++++|+|+++.
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~   80 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR   80 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence            378999999999999999998                 233457789999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH-------------HHhhhccCCCHHHHHHHHHH
Q psy11510        103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV-------------SEKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-------------~~~sa~~~~~v~~~f~~l~~  167 (171)
                      .++.....|+..++......++|+++|+||+|+.+....+++.+.             .++|+++|.|++++|+++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159          81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            999988888888877655578999999999999775444433322             25699999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0083|consensus

Probab=99.93  E-value=7.9e-27  Score=157.06  Aligned_cols=127  Identities=28%  Similarity=0.465  Sum_probs=111.6

Q ss_pred             EEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC
Q psy11510         43 LLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA  100 (171)
Q Consensus        43 liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~  100 (171)
                      ++|++++|||+|+-++..                      ++...+++++|||+||++|++....|++++|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            689999999999988876                      5667889999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        101 DKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       101 ~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      +..||++++.|+.++-+. ....+.+.+++||||+..  .+..++.++..        |+||++|-||+-.|-.++++..
T Consensus        82 nkasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             cchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            999999999999999543 446789999999999954  55666655544        8899999999999999998764

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=2.8e-24  Score=159.95  Aligned_cols=134  Identities=15%  Similarity=0.252  Sum_probs=112.7

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      +....+||+++|+.|||||||++++..                     .+...+.+++||++|++.+..++..++..+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            356789999999999999999987765                     13456899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-CCHHHHHHH--------HHhhhccCCCHHHHHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA-LTPEDIKNV--------SEKATKVKLNKQSKFQ  163 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~--------~~~sa~~~~~v~~~f~  163 (171)
                      +++|||+++..+|..+..|+..+...  ..++|+++++||+|+.+. ...+.. .+        .++|+++|.|++++|.
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~e~Sa~~~~~v~~~f~  161 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKDRQVKARQI-TFHRKKNLQYYDISAKSNYNFEKPFL  161 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCccccCCHHHH-HHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999888654  257999999999998653 333322 22        2679999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      ++++.++
T Consensus       162 ~ia~~l~  168 (215)
T PTZ00132        162 WLARRLT  168 (215)
T ss_pred             HHHHHHh
Confidence            9998875

>KOG0075|consensus

Probab=99.92  E-value=2.6e-25  Score=151.75  Aligned_cols=133  Identities=31%  Similarity=0.534  Sum_probs=122.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +.++.+.++|..++|||||++.+..                 ++.+.+.+.+||.+||.+|+++|+.|++.++++++|+|
T Consensus        18 k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VD   97 (186)
T KOG0075|consen   18 KEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVD   97 (186)
T ss_pred             HheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEee
Confidence            4678999999999999999998776                 66778999999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l  165 (171)
                      +++++.+.-..+.+++++..+...++|+++.|||.|++++.+..++.+-+             ..|++...|++.+.+++
T Consensus        98 aad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wl  177 (186)
T KOG0075|consen   98 AADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWL  177 (186)
T ss_pred             cCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHH
Confidence            99999999999999999999888999999999999999999988887776             33899999999999999


Q ss_pred             HHH
Q psy11510        166 LNE  168 (171)
Q Consensus       166 ~~~  168 (171)
                      ++.
T Consensus       178 i~h  180 (186)
T KOG0075|consen  178 IEH  180 (186)
T ss_pred             HHH
Confidence            864

>cd00157 Rho Rho (Ras homology) family

Probab=99.92  E-value=1.6e-24  Score=154.91  Aligned_cols=127  Identities=14%  Similarity=0.244  Sum_probs=103.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +||+++|++|||||||++++.+                    .++..+.+.+||+||++.+....+.+++.+|++++|||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   80 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS   80 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence            5899999999999999999996                    23446779999999999888888888899999999999


Q ss_pred             CCChhhHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCC-------------HHHHHHHH---------HhhhccC
Q psy11510         99 SADKRRLEDCAR-ELHELLQEERLAGATLLVFANKQDIEGALT-------------PEDIKNVS---------EKATKVK  155 (171)
Q Consensus        99 ~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-------------~~~~~~~~---------~~sa~~~  155 (171)
                      ++++.+|..... |+..+...  .++.|+++|+||+|+..+.+             .++..+..         +.||++|
T Consensus        81 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          81 VDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999987664 55555433  24899999999999976432             33333332         6699999


Q ss_pred             CCHHHHHHHHHH
Q psy11510        156 LNKQSKFQVLLN  167 (171)
Q Consensus       156 ~~v~~~f~~l~~  167 (171)
                      .|+.++|+.+++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>KOG0076|consensus

Probab=99.92  E-value=2.4e-25  Score=155.80  Aligned_cols=138  Identities=30%  Similarity=0.529  Sum_probs=124.0

Q ss_pred             CCCCCceeEEEEEeCCCCcHHHHHHHHhc------------------------cccCceEEEEEecCCccchhHHHHHhh
Q psy11510         32 RPQVSNVAVVSLLRNKNGGETLILKKKKM------------------------IMTFRFKLNIWDVGGQKSLRSYWRNYF   87 (171)
Q Consensus        32 ~~~~~~~~ki~liG~~~~GKttli~~~~~------------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~   87 (171)
                      +...+..+.|+++|..++|||||+.+...                        +.-...++.+||.+||+..+++|..||
T Consensus        11 ~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   11 YMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             HHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHH
Confidence            34467889999999999999999999887                        222356789999999999999999999


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHH--------------hhhc
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSE--------------KATK  153 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~--------------~sa~  153 (171)
                      ..+|++|+++|++++++|++....+..+..+....++|+++.+||.|+++++...++.....              .||.
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL  170 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence            99999999999999999999999999999988889999999999999999988888887763              4999


Q ss_pred             cCCCHHHHHHHHHHHH
Q psy11510        154 VKLNKQSKFQVLLNEV  169 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~i  169 (171)
                      +|+||++...++.+.+
T Consensus       171 ~gegv~egi~w~v~~~  186 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKKL  186 (197)
T ss_pred             hcccHHHHHHHHHHHH
Confidence            9999999999998764

>cd04129 Rho2 Rho2 subfamily

Probab=99.92  E-value=4.3e-24  Score=155.74  Aligned_cols=131  Identities=13%  Similarity=0.177  Sum_probs=106.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +.||+++|+.|+|||||++++..                    .++..+.+.+||++|++.+....+.+++++|++++||
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            46999999999999999999984                    2333466899999999988887778889999999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC------------CCHHHHHHH---------HHhhhccC
Q psy11510         98 DSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA------------LTPEDIKNV---------SEKATKVK  155 (171)
Q Consensus        98 d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~---------~~~sa~~~  155 (171)
                      |+++.++|+.+. .|+..+...  .+++|+++|+||+|+.+.            +..++...+         .++||++|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~  158 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG  158 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence            999999999987 577777543  357999999999998541            222333322         26799999


Q ss_pred             CCHHHHHHHHHHHHh
Q psy11510        156 LNKQSKFQVLLNEVS  170 (171)
Q Consensus       156 ~~v~~~f~~l~~~i~  170 (171)
                      .|++++|+.+++.++
T Consensus       159 ~~v~~~f~~l~~~~~  173 (187)
T cd04129         159 EGVDDVFEAATRAAL  173 (187)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            999999999998764

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>KOG0395|consensus

Probab=99.92  E-value=3.4e-24  Score=157.12  Aligned_cols=133  Identities=20%  Similarity=0.301  Sum_probs=120.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|.+|||||+|..+|..                    +++....+.|+||+|++.+..+...+++.+|++++|
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            578999999999999999999998                    566677888999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      |+++++.||+.+..++..+.+......+|+++||||+|+..  .++.++.....        |+||+.+.|++++|..+.
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~  161 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV  161 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence            99999999999999999997766667799999999999987  67888765553        889999999999999999


Q ss_pred             HHH
Q psy11510        167 NEV  169 (171)
Q Consensus       167 ~~i  169 (171)
                      +.+
T Consensus       162 r~~  164 (196)
T KOG0395|consen  162 REI  164 (196)
T ss_pred             HHH
Confidence            875

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.91  E-value=1.1e-23  Score=155.41  Aligned_cols=99  Identities=22%  Similarity=0.337  Sum_probs=87.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------c-----ccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------I-----MTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~-----~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      +||+++|+.|||||||++++.+                     .     ....+.+++||++|++.|..+++.+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            5899999999999999999987                     1     1245789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhcc------------------ccCCCeEEEEEeCCCCCC
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEE------------------RLAGATLLVFANKQDIEG  137 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~p~ivv~nK~Dl~~  137 (171)
                      +|+|||++++.||+.+..|+.++....                  ...++|+++||||+|+.+
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~  143 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP  143 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence            999999999999999999999997632                  124799999999999965

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0074|consensus

Probab=99.91  E-value=5.9e-24  Score=144.32  Aligned_cols=133  Identities=39%  Similarity=0.621  Sum_probs=118.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccC-ceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTF-RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      ..+.+||+++|..++|||||++++..                +... .+.+++||++||...++.|..||.+.|++|||+
T Consensus        14 t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVI   93 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVI   93 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEEE
Confidence            57899999999999999999999998                3333 488999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~  164 (171)
                      |+++...|+++...+.+++++.+...+|+.+..||+|+.-+.+.+++..-+             ++||.+++++.+-.++
T Consensus        94 DS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~w  173 (185)
T KOG0074|consen   94 DSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDW  173 (185)
T ss_pred             eCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchh
Confidence            999999999999999999999999999999999999998777777665554             6789999888887777


Q ss_pred             HHH
Q psy11510        165 LLN  167 (171)
Q Consensus       165 l~~  167 (171)
                      ++.
T Consensus       174 v~s  176 (185)
T KOG0074|consen  174 VQS  176 (185)
T ss_pred             hhc
Confidence            653

>PLN00023 GTP-binding protein; Provisional

Probab=99.90  E-value=8.4e-23  Score=158.42  Aligned_cols=114  Identities=16%  Similarity=0.241  Sum_probs=96.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cc-------------cCceEEEEEecCCccchh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IM-------------TFRFKLNIWDVGGQKSLR   80 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~-------------~~~~~~~i~d~~g~~~~~   80 (171)
                      +...+||+++|+.|||||||++++..                     ++             ...+.+++||++|+++|+
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            56779999999999999999999987                     11             124679999999999999


Q ss_pred             HHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccc-----------cCCCeEEEEEeCCCCCCC--------CCH
Q psy11510         81 SYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEER-----------LAGATLLVFANKQDIEGA--------LTP  141 (171)
Q Consensus        81 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~p~ivv~nK~Dl~~~--------~~~  141 (171)
                      .+++.|+++++++|+|||+++..+|+.+..|+..+.....           ..++|+++|+||+|+.+.        +..
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~  177 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV  177 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence            9999999999999999999999999999999999965421           135899999999999652        245


Q ss_pred             HHHHHHH
Q psy11510        142 EDIKNVS  148 (171)
Q Consensus       142 ~~~~~~~  148 (171)
                      ++.+.++
T Consensus       178 e~a~~~A  184 (334)
T PLN00023        178 DAARQWV  184 (334)
T ss_pred             HHHHHHH
Confidence            6666665

>KOG0072|consensus

Probab=99.89  E-value=2e-23  Score=142.06  Aligned_cols=139  Identities=35%  Similarity=0.547  Sum_probs=126.2

Q ss_pred             cCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         31 HRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        31 ~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .++.+.+..+|+++|..|+||||+++++.-                +.+++.++++||.+|+-..++.|+-||.+.+++|
T Consensus        11 ~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   11 ALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             HhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence            344466899999999999999999999986                6778899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSK  161 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~  161 (171)
                      +|+|+++.+........+..+++++...+..+++++||+|...+....|+...+             ++||.+|+|++..
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            999999999998888889999999999999999999999999887777766665             7799999999999


Q ss_pred             HHHHHHHH
Q psy11510        162 FQVLLNEV  169 (171)
Q Consensus       162 f~~l~~~i  169 (171)
                      ++|+.+.+
T Consensus       171 ~DWL~~~l  178 (182)
T KOG0072|consen  171 MDWLQRPL  178 (182)
T ss_pred             HHHHHHHH
Confidence            99998765

>cd01890 LepA LepA subfamily

Probab=99.89  E-value=3.2e-22  Score=144.34  Aligned_cols=125  Identities=15%  Similarity=0.218  Sum_probs=98.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----------------------------------c-----ccCceEEEEEecCCccchh
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----------------------------------I-----MTFRFKLNIWDVGGQKSLR   80 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----------------------------------~-----~~~~~~~~i~d~~g~~~~~   80 (171)
                      +|+++|..++|||||++++.+                                  .     +...+.+++|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            689999999999999999964                                  0     2346778999999999999


Q ss_pred             HHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHH--------HH
Q psy11510         81 SYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNV--------SE  149 (171)
Q Consensus        81 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~--------~~  149 (171)
                      ..+..+++.+|++++|+|+++..+++....|....     ..++|+++|+||+|+.+....   +++.+.        .+
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  156 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-----ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAIL  156 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-----HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEE
Confidence            99999999999999999999877666655543322     147899999999999653221   222222        25


Q ss_pred             hhhccCCCHHHHHHHHHHHH
Q psy11510        150 KATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       150 ~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +||++|.|++++|+.+++.+
T Consensus       157 ~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         157 VSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             eeccCCCCHHHHHHHHHhhC
Confidence            79999999999999998764

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>KOG0393|consensus

Probab=99.89  E-value=4.2e-23  Score=149.39  Aligned_cols=132  Identities=14%  Similarity=0.214  Sum_probs=113.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+|+++||+.++|||+|+..+..                    + ++..+.+.+|||+||+.|..+++.-+.++|++++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            578999999999999999988875                    6 4888999999999999999888888999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhh
Q psy11510         96 VVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKA  151 (171)
Q Consensus        96 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~s  151 (171)
                      +|++.++.||+++. +|+.++...  .+++|+++||+|.||.+              .+..++.....         |+|
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            99999999999965 888888554  48999999999999974              23333333332         789


Q ss_pred             hccCCCHHHHHHHHHHHHh
Q psy11510        152 TKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       152 a~~~~~v~~~f~~l~~~i~  170 (171)
                      |++..|++++|+.+++..+
T Consensus       161 a~tq~~v~~vF~~a~~~~l  179 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAAL  179 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHh
Confidence            9999999999999998765

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.88  E-value=1.1e-21  Score=140.08  Aligned_cols=129  Identities=11%  Similarity=0.076  Sum_probs=92.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh---------HHHHHhhhCCC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR---------SYWRNYFESTD   91 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~---------~~~~~~~~~~~   91 (171)
                      +|+++|.+|||||||++++.+                   ...++..+.+|||||+....         .........+|
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d   81 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA   81 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence            799999999999999999998                   12234688999999974210         01111123468


Q ss_pred             EEEEEEeCCChhhH--HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHH
Q psy11510         92 GLIWVVDSADKRRL--EDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSK  161 (171)
Q Consensus        92 ~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~  161 (171)
                      ++++|+|+++..++  +....|+..+...  ..+.|+++|+||+|+.+.....+..++.        ++||++|.|++++
T Consensus        82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (168)
T cd01897          82 AVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV  159 (168)
T ss_pred             cEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence            99999999987654  5555666666432  2479999999999997633322222222        6699999999999


Q ss_pred             HHHHHHHHh
Q psy11510        162 FQVLLNEVS  170 (171)
Q Consensus       162 f~~l~~~i~  170 (171)
                      |+++++.++
T Consensus       160 ~~~l~~~~~  168 (168)
T cd01897         160 KNKACELLL  168 (168)
T ss_pred             HHHHHHHhC
Confidence            999988753

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01898 Obg Obg subfamily

Probab=99.88  E-value=8.8e-22  Score=140.72  Aligned_cols=129  Identities=19%  Similarity=0.136  Sum_probs=95.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------cccCc-eEEEEEecCCcc----chhHHHHHh---hhCCCE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------IMTFR-FKLNIWDVGGQK----SLRSYWRNY---FESTDG   92 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------~~~~~-~~~~i~d~~g~~----~~~~~~~~~---~~~~~~   92 (171)
                      +|+++|.+|||||||++++.+                   +...+ ..+.+|||||+.    ..+.+...+   +..+|+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~   81 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL   81 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence            589999999999999999985                   11223 388999999963    222233333   346999


Q ss_pred             EEEEEeCCCh-hhHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCCCH-HHHHHHH---------HhhhccCCCHHH
Q psy11510         93 LIWVVDSADK-RRLEDCARELHELLQEER-LAGATLLVFANKQDIEGALTP-EDIKNVS---------EKATKVKLNKQS  160 (171)
Q Consensus        93 ii~v~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~~~~~-~~~~~~~---------~~sa~~~~~v~~  160 (171)
                      +++|+|++++ .+++.+..|...+.+... ..++|+++|+||+|+.+.... +.+....         ++||+++.|+++
T Consensus        82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  161 (170)
T cd01898          82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDE  161 (170)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHH
Confidence            9999999999 788888888877754321 247999999999999763332 2222221         569999999999


Q ss_pred             HHHHHHHH
Q psy11510        161 KFQVLLNE  168 (171)
Q Consensus       161 ~f~~l~~~  168 (171)
                      +|+.+++.
T Consensus       162 l~~~i~~~  169 (170)
T cd01898         162 LLRKLAEL  169 (170)
T ss_pred             HHHHHHhh
Confidence            99999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.87  E-value=1.3e-21  Score=132.38  Aligned_cols=93  Identities=25%  Similarity=0.405  Sum_probs=76.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      ||+++|+.|||||||++++.+                       .......+.+||++|++.+...+..++.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            799999999999999999997                       222334588999999999888888889999999999


Q ss_pred             EeCCChhhHHHHHHH---HHHHHhccccCCCeEEEEEeCCC
Q psy11510         97 VDSADKRRLEDCARE---LHELLQEERLAGATLLVFANKQD  134 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~---~~~i~~~~~~~~~p~ivv~nK~D  134 (171)
                      ||++++.+|+++..+   +..+..  ...++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~--~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRK--RDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHH--HSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHc--cCCCCCEEEEEeccC
Confidence            999999999987554   444532  235699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>KOG4252|consensus

Probab=99.86  E-value=4.7e-22  Score=140.17  Aligned_cols=134  Identities=13%  Similarity=0.291  Sum_probs=115.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ....+|++++|+.++||||+++++..                     +...++...+||++||+.|..+...|++++.+.
T Consensus        17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~   96 (246)
T KOG4252|consen   17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS   96 (246)
T ss_pred             hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence            55689999999999999999999995                     444566678999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++||+.++..||+...+|+.++..+  ...+|.++|-||+|+.+  .+..++++...        .+|++...||-++|.
T Consensus        97 vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~  174 (246)
T KOG4252|consen   97 VLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA  174 (246)
T ss_pred             EEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence            9999999999999999999999554  47899999999999976  34444443332        679999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .++....
T Consensus       175 YLaeK~~  181 (246)
T KOG4252|consen  175 YLAEKLT  181 (246)
T ss_pred             HHHHHHH
Confidence            9987643

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.86  E-value=1.4e-21  Score=136.09  Aligned_cols=118  Identities=12%  Similarity=0.095  Sum_probs=86.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--cc-----cCceEEEEEecCCcc-----chhHHHHHhhhCCCEEEEEEeCCChhhHHH
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--IM-----TFRFKLNIWDVGGQK-----SLRSYWRNYFESTDGLIWVVDSADKRRLED  107 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--~~-----~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~  107 (171)
                      ||+++|++|||||||++++.+  ..     .....-.+||+||+.     .+..+.+ .++++|++++|+|++++.++..
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~~~~t~~~~~~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~   80 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEILYKKTQAVEYNDGAIDTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP   80 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccccccceeEEEcCeeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC
Confidence            899999999999999999998  11     111222789999972     3444444 4789999999999999988754


Q ss_pred             HHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH---------HhhhccCCCHHHHHHHHH
Q psy11510        108 CARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS---------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       108 ~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l~  166 (171)
                       ..|.. ..      ..|+++|+||+|+.+ ....++..++.         ++||++|.|++++|+.++
T Consensus        81 -~~~~~-~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        81 -PGFAS-IF------VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             -hhHHH-hc------cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence             23322 21      249999999999965 33444433332         569999999999998875

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.86  E-value=1.1e-20  Score=140.53  Aligned_cols=133  Identities=23%  Similarity=0.308  Sum_probs=104.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++..                     .....+.+.+||++|++.++.+++.|+.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            349999999999999999999997                     12226779999999999999999999999999999


Q ss_pred             EEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--------------HHHHH-----------HHH
Q psy11510         96 VVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP--------------EDIKN-----------VSE  149 (171)
Q Consensus        96 v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~--------------~~~~~-----------~~~  149 (171)
                      |+|.++.. +++....|...+.... ..+.|+++|+||+|+......              .....           ..+
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE  162 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence            99999944 4555667777775432 247999999999999774211              11111           115


Q ss_pred             hhhc--cCCCHHHHHHHHHHHHh
Q psy11510        150 KATK--VKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       150 ~sa~--~~~~v~~~f~~l~~~i~  170 (171)
                      +|++  ++.++.++|..+++.+.
T Consensus       163 ~s~~~~~~~~v~~~~~~~~~~~~  185 (219)
T COG1100         163 TSAKSLTGPNVNELFKELLRKLL  185 (219)
T ss_pred             eecccCCCcCHHHHHHHHHHHHH
Confidence            5888  99999999999887764

>PTZ00099 rab6; Provisional

Probab=99.86  E-value=7.5e-21  Score=137.56  Aligned_cols=108  Identities=21%  Similarity=0.363  Sum_probs=93.0

Q ss_pred             ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CC
Q psy11510         62 MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--AL  139 (171)
Q Consensus        62 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~  139 (171)
                      ++..+.+.+|||+|++++..+++.+++++|++++|||++++.+|+.+..|+..++... .+++|+++|+||+|+.+  .+
T Consensus        25 ~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v  103 (176)
T PTZ00099         25 DEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKV  103 (176)
T ss_pred             CCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCC
Confidence            3457899999999999999999999999999999999999999999999999987653 35799999999999964  45


Q ss_pred             CHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        140 TPEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       140 ~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      +.++.....        ++||++|.||+++|+++++.+.
T Consensus       104 ~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~  142 (176)
T PTZ00099        104 TYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLP  142 (176)
T ss_pred             CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            665555543        6799999999999999998763

>cd04171 SelB SelB subfamily

Probab=99.85  E-value=1.5e-20  Score=133.29  Aligned_cols=122  Identities=16%  Similarity=0.081  Sum_probs=89.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------------cccC-ceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------------IMTF-RFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      +.|+++|.+|||||||++++.+                      .... ...+.+|||||++++......+++++|++++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            3689999999999999999973                      1112 5678999999999987777777889999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH-----------HhhhccCCC
Q psy11510         96 VVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS-----------EKATKVKLN  157 (171)
Q Consensus        96 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~-----------~~sa~~~~~  157 (171)
                      |+|+++   .++++.+.    .+ ...  ...|+++|+||+|+.+...    .+++.+.+           ++||++|.|
T Consensus        81 V~d~~~~~~~~~~~~~~----~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          81 VVAADEGIMPQTREHLE----IL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEECCCCccHhHHHHHH----HH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            999987   33333322    11 111  2349999999999976311    12222222           459999999


Q ss_pred             HHHHHHHHHH
Q psy11510        158 KQSKFQVLLN  167 (171)
Q Consensus       158 v~~~f~~l~~  167 (171)
                      ++++|+.+..
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.85  E-value=1.9e-20  Score=130.92  Aligned_cols=127  Identities=18%  Similarity=0.312  Sum_probs=100.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-------------------cccCc--eEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-------------------IMTFR--FKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      .+||+++|.+|+|||||++++..                   ....+  +.+.+||+||+..+..++..+++++++++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999998                   22233  7789999999999999999999999999999


Q ss_pred             EeCCCh-hhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------HhhhccCCCHHHHHHHH
Q psy11510         97 VDSADK-RRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        97 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l  165 (171)
                      +|.... .++.... .|...+..... .+.|+++++||+|+......++.....         +.||++|.|+.++|+.+
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            998887 6776665 66666654432 289999999999997632222222222         66999999999999876

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01878 HflX HflX subfamily

Probab=99.85  E-value=1e-20  Score=139.54  Aligned_cols=133  Identities=17%  Similarity=0.138  Sum_probs=96.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------ccc-CceEEEEEecCCccc---------hhHHHHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMT-FRFKLNIWDVGGQKS---------LRSYWRN   85 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~-~~~~~~i~d~~g~~~---------~~~~~~~   85 (171)
                      .++.++|+++|++|||||||++++.+                   +.. ....+.+||+||...         +...+ .
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~  116 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-E  116 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence            35568999999999999999999997                   111 123789999999732         22222 2


Q ss_pred             hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH-----HHHHHHhhhccCCCHHH
Q psy11510         86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED-----IKNVSEKATKVKLNKQS  160 (171)
Q Consensus        86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-----~~~~~~~sa~~~~~v~~  160 (171)
                      .+.++|++++|+|++++.++.....|...+ ......++|+++|+||+|+.+......     .....++||++|.|+++
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  195 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDE  195 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHH
Confidence            356899999999999988887766655444 333345799999999999966322110     01123679999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +++.+.+.+
T Consensus       196 l~~~L~~~~  204 (204)
T cd01878         196 LLEAIEELL  204 (204)
T ss_pred             HHHHHHhhC
Confidence            999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.84  E-value=3.8e-20  Score=136.76  Aligned_cols=109  Identities=28%  Similarity=0.369  Sum_probs=91.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----------------cc----cCceEEEEEecCCccchhHHHHHhhhCC-CEEEEEEe
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----------------IM----TFRFKLNIWDVGGQKSLRSYWRNYFEST-DGLIWVVD   98 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----------------~~----~~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~ii~v~d   98 (171)
                      +|+++|++|||||||++++..                ..    .....+.+||+||+.+++..+..+++.+ +++|||+|
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD   81 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD   81 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999987                01    2356789999999999999999999998 99999999


Q ss_pred             CCCh-hhHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510         99 SADK-RRLEDCARELHELLQEE--RLAGATLLVFANKQDIEGALTPEDIKNVS  148 (171)
Q Consensus        99 ~~~~-~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  148 (171)
                      +++. .++....+++..++...  ..+++|+++++||+|+..+.+.+.+++.+
T Consensus        82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~l  134 (203)
T cd04105          82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQL  134 (203)
T ss_pred             CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHH
Confidence            9997 78888888887776532  22689999999999998877776666665

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=4.8e-20  Score=151.66  Aligned_cols=126  Identities=16%  Similarity=0.207  Sum_probs=93.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc--------hhHHHHHhhh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS--------LRSYWRNYFE   88 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~   88 (171)
                      ...+|+++|.+|||||||++++.+                    ....+..+.+|||||.+.        +...+..+++
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~  116 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR  116 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence            347899999999999999999997                    122345688999999763        3344566788


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhhhccCCCHHH
Q psy11510         89 STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKATKVKLNKQS  160 (171)
Q Consensus        89 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~sa~~~~~v~~  160 (171)
                      .+|++++|+|+++..++.. ..+ ...+..   .++|+++|+||+|+.... .+ ..+.        .++||++|.|+++
T Consensus       117 ~aD~il~VvD~~~~~s~~~-~~i-~~~l~~---~~~piilV~NK~Dl~~~~-~~-~~~~~~~g~~~~~~iSA~~g~gi~e  189 (472)
T PRK03003        117 TADAVLFVVDATVGATATD-EAV-ARVLRR---SGKPVILAANKVDDERGE-AD-AAALWSLGLGEPHPVSALHGRGVGD  189 (472)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHH-HHHHHH---cCCCEEEEEECccCCccc-hh-hHHHHhcCCCCeEEEEcCCCCCcHH
Confidence            9999999999998766533 222 233232   479999999999996521 11 1121        1579999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +|+.+++.+
T Consensus       190 L~~~i~~~l  198 (472)
T PRK03003        190 LLDAVLAAL  198 (472)
T ss_pred             HHHHHHhhc
Confidence            999998765

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.83  E-value=5.2e-20  Score=145.99  Aligned_cols=130  Identities=18%  Similarity=0.167  Sum_probs=95.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------ccc-CceEEEEEecCCc---------cchhHHHHHhh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMT-FRFKLNIWDVGGQ---------KSLRSYWRNYF   87 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~-~~~~~~i~d~~g~---------~~~~~~~~~~~   87 (171)
                      ...+|+++|.+|||||||++++.+                   +.. ....+.+|||+|.         +.|+..+. .+
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle-~~  266 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLE-EV  266 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHH-HH
Confidence            458999999999999999999998                   111 3468899999997         22333222 36


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH----HHHHhhhccCCCHHHHHH
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK----NVSEKATKVKLNKQSKFQ  163 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~~~sa~~~~~v~~~f~  163 (171)
                      .++|++++|+|++++.+++.+..|.. ++......++|+++|+||+|+.+........    ....+||++|.|++++++
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~-~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~~  345 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEK-VLEELGAEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLE  345 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHH-HHHHhccCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHHH
Confidence            78999999999999988877655433 3343334578999999999996521111111    123579999999999999


Q ss_pred             HHHHH
Q psy11510        164 VLLNE  168 (171)
Q Consensus       164 ~l~~~  168 (171)
                      .+.+.
T Consensus       346 ~I~~~  350 (351)
T TIGR03156       346 AIAER  350 (351)
T ss_pred             HHHhh
Confidence            98764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=1.6e-19  Score=148.58  Aligned_cols=155  Identities=19%  Similarity=0.207  Sum_probs=109.4

Q ss_pred             eeeccceeeeccceecccc-------cccCCC-------CCceeEEEEEeCCCCcHHHHHHHHhc---------------
Q psy11510         10 WDVGGQKSLRSYSYYGMGM-------LRHRPQ-------VSNVAVVSLLRNKNGGETLILKKKKM---------------   60 (171)
Q Consensus        10 ~~~~~~~~~~~~~~~~m~~-------~~~~~~-------~~~~~ki~liG~~~~GKttli~~~~~---------------   60 (171)
                      |.+|...+++.+|.++-|.       ++....       ....++|+++|.+|||||||++++.+               
T Consensus       169 ~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d  248 (472)
T PRK03003        169 WSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVD  248 (472)
T ss_pred             HhcCCCCeEEEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCC
Confidence            4455566778888777665       111111       13468999999999999999999997               


Q ss_pred             -----cccCceEEEEEecCCc----------cchhHHH-HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCC
Q psy11510         61 -----IMTFRFKLNIWDVGGQ----------KSLRSYW-RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA  124 (171)
Q Consensus        61 -----~~~~~~~~~i~d~~g~----------~~~~~~~-~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  124 (171)
                           +...+..+.+|||+|.          +.+..+. ..+++++|++++|+|++++.++.... ++..+..    .++
T Consensus       249 ~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~  323 (472)
T PRK03003        249 PVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGR  323 (472)
T ss_pred             cceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCC
Confidence                 2234556789999995          3333332 34578999999999999988887663 3444432    579


Q ss_pred             eEEEEEeCCCCCCCCCH----HHHHHH---------HHhhhccCCCHHHHHHHHHHHH
Q psy11510        125 TLLVFANKQDIEGALTP----EDIKNV---------SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       125 p~ivv~nK~Dl~~~~~~----~~~~~~---------~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      |+++|+||+|+.+....    +++.+.         .++||++|.|++++|+.+++.+
T Consensus       324 piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~  381 (472)
T PRK03003        324 ALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETAL  381 (472)
T ss_pred             CEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            99999999999753211    122221         1569999999999999998754

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.82  E-value=3.3e-19  Score=127.05  Aligned_cols=124  Identities=18%  Similarity=0.186  Sum_probs=91.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------ccc---CceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------IMT---FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      .|+++|.+|+|||||++++..                   ...   ....+.+|||||++.+..++..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            489999999999999999987                   112   2567899999999999999998999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHH--------------HHHhhhccCCCHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKN--------------VSEKATKVKLNKQS  160 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~--------------~~~~sa~~~~~v~~  160 (171)
                      |+++...-+. ...+..+ ..   .++|+++|+||+|+......   +++..              ..++|+++|.|+.+
T Consensus        82 d~~~~~~~~~-~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (168)
T cd01887          82 AADDGVMPQT-IEAIKLA-KA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD  156 (168)
T ss_pred             ECCCCccHHH-HHHHHHH-HH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence            9987432111 1112222 22   47899999999998753211   11111              12559999999999


Q ss_pred             HHHHHHHH
Q psy11510        161 KFQVLLNE  168 (171)
Q Consensus       161 ~f~~l~~~  168 (171)
                      +++.+.+.
T Consensus       157 l~~~l~~~  164 (168)
T cd01887         157 LLEAILLL  164 (168)
T ss_pred             HHHHHHHh
Confidence            99999764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.82  E-value=2e-19  Score=141.71  Aligned_cols=131  Identities=18%  Similarity=0.088  Sum_probs=98.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------ccc-CceEEEEEecCCccc----hhHHH---HHhhhCCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMT-FRFKLNIWDVGGQKS----LRSYW---RNYFESTD   91 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~-~~~~~~i~d~~g~~~----~~~~~---~~~~~~~~   91 (171)
                      -.|.++|.+|||||||++++.+                   +.. +...+.+||+||.-.    ...+.   -.+++.++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~  238 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR  238 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence            5789999999999999999986                   222 345789999999632    11233   33456799


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCC--HHHHHHHH--------HhhhccCCCHHH
Q psy11510         92 GLIWVVDSADKRRLEDCARELHELLQEE-RLAGATLLVFANKQDIEGALT--PEDIKNVS--------EKATKVKLNKQS  160 (171)
Q Consensus        92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~--------~~sa~~~~~v~~  160 (171)
                      ++++|+|+++.++++.+..|..++.... ...++|+++|+||+|+.+...  .+....+.        ++||++++|+++
T Consensus       239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~e  318 (335)
T PRK12299        239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDE  318 (335)
T ss_pred             EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHH
Confidence            9999999998888988888888775432 225799999999999976322  22232221        469999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +++.+.+.+
T Consensus       319 L~~~L~~~l  327 (335)
T PRK12299        319 LLRALWELL  327 (335)
T ss_pred             HHHHHHHHH
Confidence            999998765

>PRK15494 era GTPase Era; Provisional

Probab=99.82  E-value=2e-19  Score=142.21  Aligned_cols=129  Identities=18%  Similarity=0.218  Sum_probs=91.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc-hhHHH-------HHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS-LRSYW-------RNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~-~~~~~-------~~~   86 (171)
                      ..+..+|+++|.+|||||||++++.+                    ...++.++.+|||||+.. +..+.       ...
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            35678999999999999999999988                    223456789999999842 22221       123


Q ss_pred             hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------HhhhccCC
Q psy11510         87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------EKATKVKL  156 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------~~sa~~~~  156 (171)
                      +.++|++++|+|+++  ++.....++...+..   .+.|+++|+||+|+.+. ..+++.+.+          .+||++|.
T Consensus       129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~  202 (339)
T PRK15494        129 LHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGK  202 (339)
T ss_pred             hhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCcc
Confidence            678999999999765  344444333333232   25677889999999754 333444433          45999999


Q ss_pred             CHHHHHHHHHHHH
Q psy11510        157 NKQSKFQVLLNEV  169 (171)
Q Consensus       157 ~v~~~f~~l~~~i  169 (171)
                      |++++|+.+.+..
T Consensus       203 gv~eL~~~L~~~l  215 (339)
T PRK15494        203 NIDGLLEYITSKA  215 (339)
T ss_pred             CHHHHHHHHHHhC
Confidence            9999999998653

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.82  E-value=3.3e-19  Score=123.22  Aligned_cols=124  Identities=25%  Similarity=0.385  Sum_probs=99.4

Q ss_pred             EEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC
Q psy11510         43 LLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD  101 (171)
Q Consensus        43 liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~  101 (171)
                      ++|++|+|||||++++.+                     .......+.+||++|+..+...+..+++.+|++++|+|+++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   80 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD   80 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence            589999999999999986                     11236778999999999888888889999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH--HH---------HHhhhccCCCHHHHHHHHH
Q psy11510        102 KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK--NV---------SEKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       102 ~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--~~---------~~~sa~~~~~v~~~f~~l~  166 (171)
                      +.++.....|+..........++|+++++||+|+......+...  ..         .++|+..+.|+.++++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            99998888774444444455789999999999997744333321  11         1669999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.82  E-value=2e-19  Score=146.47  Aligned_cols=128  Identities=15%  Similarity=0.212  Sum_probs=96.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH--------HHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY--------WRNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~--------~~~~   86 (171)
                      .++.+||+++|++|||||||++++.+                    +..++..+.+|||||+..+...        ...+
T Consensus       200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            34678999999999999999999987                    2334567899999998655432        2356


Q ss_pred             hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH-----HHhhhccCCCHHHH
Q psy11510         87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV-----SEKATKVKLNKQSK  161 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----~~~sa~~~~~v~~~  161 (171)
                      ++++|++++|+|++++.+++..  |+..+..    .++|+++|+||+|+.+. +.++..+.     .++||++ .|+++.
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~~~~~~~~~~~vSak~-~gI~~~  351 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFFVSSKVLNSSNLSAKQ-LKIKAL  351 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhhhhhcCCceEEEEEec-CCHHHH
Confidence            7899999999999998887664  5555522    47899999999999754 22222221     3568887 699999


Q ss_pred             HHHHHHHHh
Q psy11510        162 FQVLLNEVS  170 (171)
Q Consensus       162 f~~l~~~i~  170 (171)
                      |+.+.+.+.
T Consensus       352 ~~~L~~~i~  360 (442)
T TIGR00450       352 VDLLTQKIN  360 (442)
T ss_pred             HHHHHHHHH
Confidence            999988763

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.81  E-value=5.2e-19  Score=139.20  Aligned_cols=132  Identities=17%  Similarity=0.116  Sum_probs=96.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-------------------cccCc-eEEEEEecCCccch----hHHHHH---hhhCC
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-------------------IMTFR-FKLNIWDVGGQKSL----RSYWRN---YFEST   90 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~~~-~~~~i~d~~g~~~~----~~~~~~---~~~~~   90 (171)
                      .-.|+++|.+|||||||++++..                   +...+ ..+.+||+||....    ..+...   +++++
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            36799999999999999999996                   22223 67899999997421    123333   35579


Q ss_pred             CEEEEEEeCCCh---hhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------HhhhccCCC
Q psy11510         91 DGLIWVVDSADK---RRLEDCARELHELLQEE-RLAGATLLVFANKQDIEGALTPEDIKNVS---------EKATKVKLN  157 (171)
Q Consensus        91 ~~ii~v~d~~~~---~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------~~sa~~~~~  157 (171)
                      +++++|+|+++.   ++++.+..|..++.... ...++|+++|+||+|+.+....++..+.+         ++||++++|
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~G  316 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEG  316 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcC
Confidence            999999999976   67777777777664432 23579999999999997643222332222         459999999


Q ss_pred             HHHHHHHHHHHH
Q psy11510        158 KQSKFQVLLNEV  169 (171)
Q Consensus       158 v~~~f~~l~~~i  169 (171)
                      ++++++.+.+.+
T Consensus       317 I~eL~~~I~~~l  328 (329)
T TIGR02729       317 LDELLYALAELL  328 (329)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.81  E-value=2.2e-19  Score=128.74  Aligned_cols=126  Identities=18%  Similarity=0.226  Sum_probs=92.5

Q ss_pred             EEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccc----hhHH---HHHhhhCCCEEEE
Q psy11510         43 LLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKS----LRSY---WRNYFESTDGLIW   95 (171)
Q Consensus        43 liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~----~~~~---~~~~~~~~~~ii~   95 (171)
                      ++|++|||||||++++.+                   .... ...+.+||+||...    .+.+   +..+++++|++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~   80 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH   80 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence            589999999999999987                   1223 67789999999632    1112   2345678999999


Q ss_pred             EEeCCCh------hhHHHHHHHHHHHHhccc------cCCCeEEEEEeCCCCCCCCCHHHH--HHHH--------Hhhhc
Q psy11510         96 VVDSADK------RRLEDCARELHELLQEER------LAGATLLVFANKQDIEGALTPEDI--KNVS--------EKATK  153 (171)
Q Consensus        96 v~d~~~~------~s~~~~~~~~~~i~~~~~------~~~~p~ivv~nK~Dl~~~~~~~~~--~~~~--------~~sa~  153 (171)
                      |+|+++.      .++++...|...+.....      ..+.|+++|+||+|+.......+.  ....        ++||+
T Consensus        81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  160 (176)
T cd01881          81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAK  160 (176)
T ss_pred             EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehh
Confidence            9999988      578887777777754332      147999999999999763322221  1111        56999


Q ss_pred             cCCCHHHHHHHHHHH
Q psy11510        154 VKLNKQSKFQVLLNE  168 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~  168 (171)
                      ++.|++++++.+++.
T Consensus       161 ~~~gl~~l~~~l~~~  175 (176)
T cd01881         161 TEEGLDELIRAIYEL  175 (176)
T ss_pred             hhcCHHHHHHHHHhh
Confidence            999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>cd01894 EngA1 EngA1 subfamily

Probab=99.81  E-value=2.9e-19  Score=125.63  Aligned_cols=123  Identities=14%  Similarity=0.138  Sum_probs=88.6

Q ss_pred             EEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH--------HHHHhhhCCCEE
Q psy11510         42 SLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS--------YWRNYFESTDGL   93 (171)
Q Consensus        42 ~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~~~i   93 (171)
                      +++|.+|+|||||++++..                    ....+..+.+||+||...+..        .+...++++|++
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i   80 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI   80 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence            4799999999999999986                    222346789999999887544        334567889999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-HHHH-----HHHHhhhccCCCHHHHHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP-EDIK-----NVSEKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~-~~~~-----~~~~~sa~~~~~v~~~f~~l~~  167 (171)
                      ++|+|+.+..+....  ++...+..   .+.|+++|+||+|+.+.... +...     ...++|+++|.|++++|+.+++
T Consensus        81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (157)
T cd01894          81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILE  155 (157)
T ss_pred             EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence            999999875444332  22333332   36999999999999773222 1111     1125799999999999999987


Q ss_pred             HH
Q psy11510        168 EV  169 (171)
Q Consensus       168 ~i  169 (171)
                      .+
T Consensus       156 ~~  157 (157)
T cd01894         156 LL  157 (157)
T ss_pred             hC
Confidence            53

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.81  E-value=7.8e-19  Score=128.69  Aligned_cols=94  Identities=19%  Similarity=0.279  Sum_probs=75.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhHHH
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRSYW   83 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~~~   83 (171)
                      .+|+++|..++|||||++++.+                                   +......+++||+||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999984                                   12235678999999999999999


Q ss_pred             HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      ..+++++|++++|+|+++.. +.....++..+..    .++|+++|+||+|+.+
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~  131 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPD  131 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            99999999999999998742 3333344444422    4789999999999975

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04213 GTP-binding protein; Provisional

Probab=99.81  E-value=9.5e-20  Score=134.02  Aligned_cols=131  Identities=15%  Similarity=0.181  Sum_probs=89.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------ccc-----CceEEEEEecCC-----------ccchhHHHHHhhh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------IMT-----FRFKLNIWDVGG-----------QKSLRSYWRNYFE   88 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------~~~-----~~~~~~i~d~~g-----------~~~~~~~~~~~~~   88 (171)
                      +.+.++|+++|.+|||||||++++.+          ...     ..-.+.+|||||           ++.++..+..++.
T Consensus         6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   85 (201)
T PRK04213          6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE   85 (201)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence            34578999999999999999999987          000     001578999999           6777777777765


Q ss_pred             ----CCCEEEEEEeCCChhhH-HH--------HHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHH-------
Q psy11510         89 ----STDGLIWVVDSADKRRL-ED--------CARELHELLQEERLAGATLLVFANKQDIEGAL--TPEDIKN-------  146 (171)
Q Consensus        89 ----~~~~ii~v~d~~~~~s~-~~--------~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~-------  146 (171)
                          .++++++|+|.++...+ +.        ....+...+.   ..++|+++|+||+|+.+..  ..+++.+       
T Consensus        86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~  162 (201)
T PRK04213         86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPP  162 (201)
T ss_pred             hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcCCcc
Confidence                35788888887653221 00        0111122222   2479999999999996532  1122222       


Q ss_pred             -------HHHhhhccCCCHHHHHHHHHHHH
Q psy11510        147 -------VSEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       147 -------~~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                             ..++||++| |++++|+++++.+
T Consensus       163 ~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~  191 (201)
T PRK04213        163 WRQWQDIIAPISAKKG-GIEELKEAIRKRL  191 (201)
T ss_pred             ccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence                   135699999 9999999998764

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.81  E-value=3.2e-19  Score=126.91  Aligned_cols=121  Identities=12%  Similarity=0.116  Sum_probs=87.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc---cccCceEE-----EEEecCCcc-----chhHHHHHhhhCCCEEEEEEeCCChhhHH
Q psy11510         40 VVSLLRNKNGGETLILKKKKM---IMTFRFKL-----NIWDVGGQK-----SLRSYWRNYFESTDGLIWVVDSADKRRLE  106 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~---~~~~~~~~-----~i~d~~g~~-----~~~~~~~~~~~~~~~ii~v~d~~~~~s~~  106 (171)
                      +|+++|.+|+|||||++++.+   .......+     .+||+||..     .++.+. ..++++|++++|+|+++..++.
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~~~~~~v~~~~~~~iDtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~   81 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRL   81 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccCccceEEEECCCCcccCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCccccc
Confidence            799999999999999999888   11111111     269999973     222232 2368999999999999887652


Q ss_pred             HHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        107 DCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       107 ~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                        ..|+..+     ..++|+++++||+|+.+ .+.+.+.+++          ++||++|+|++++|+.+++.+
T Consensus        82 --~~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~  146 (158)
T PRK15467         82 --PAGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLT  146 (158)
T ss_pred             --CHHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhc
Confidence              2344443     13679999999999965 3444444443          569999999999999998754

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.80  E-value=1.4e-18  Score=123.17  Aligned_cols=129  Identities=19%  Similarity=0.240  Sum_probs=105.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------cccCceEEEEEecCCccchhHHHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------IMTFRFKLNIWDVGGQKSLRSYWR   84 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------~~~~~~~~~i~d~~g~~~~~~~~~   84 (171)
                      .....||+++|+.++||||+++++..                              ...++..+.+++||||++|.-+|.
T Consensus         7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~   86 (187)
T COG2229           7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE   86 (187)
T ss_pred             cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence            45689999999999999999999998                              223347889999999999999999


Q ss_pred             HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHh----------hhcc
Q psy11510         85 NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEK----------ATKV  154 (171)
Q Consensus        85 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~----------sa~~  154 (171)
                      .+++++.+.++++|++.+..+ .....+.-+ ...  ..+|++|++||+|+++..+.+.++++++.          +|..
T Consensus        87 ~l~~ga~gaivlVDss~~~~~-~a~~ii~f~-~~~--~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e  162 (187)
T COG2229          87 ILSRGAVGAIVLVDSSRPITF-HAEEIIDFL-TSR--NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATE  162 (187)
T ss_pred             HHhCCcceEEEEEecCCCcch-HHHHHHHHH-hhc--cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeeccc
Confidence            999999999999999999998 333333333 322  12999999999999999999999998844          5677


Q ss_pred             CCCHHHHHHHHHH
Q psy11510        155 KLNKQSKFQVLLN  167 (171)
Q Consensus       155 ~~~v~~~f~~l~~  167 (171)
                      +++..+.++.+..
T Consensus       163 ~~~~~~~L~~ll~  175 (187)
T COG2229         163 GEGARDQLDVLLL  175 (187)
T ss_pred             chhHHHHHHHHHh
Confidence            8888888777654

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.80  E-value=5.3e-19  Score=124.64  Aligned_cols=120  Identities=19%  Similarity=0.166  Sum_probs=87.8

Q ss_pred             EEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH------HHHHhhh--CCCEEEE
Q psy11510         43 LLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS------YWRNYFE--STDGLIW   95 (171)
Q Consensus        43 liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--~~~~ii~   95 (171)
                      ++|..|||||||++++.+                   +..++..+.+|||||++.+..      ++..++.  ++|++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~   80 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN   80 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence            589999999999999988                   223346789999999877654      3566664  8999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHH--------HHhhhccCCCHHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-PEDIKNV--------SEKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~--------~~~sa~~~~~v~~~f~~l~  166 (171)
                      |+|++++.+..   .++..+.+    .++|+++|+||+|+.+... ..+...+        .+.|+.+|.|+.++|+.+.
T Consensus        81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~  153 (158)
T cd01879          81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA  153 (158)
T ss_pred             EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence            99998865432   33334422    3789999999999976321 1112222        1569999999999999998


Q ss_pred             HHH
Q psy11510        167 NEV  169 (171)
Q Consensus       167 ~~i  169 (171)
                      +..
T Consensus       154 ~~~  156 (158)
T cd01879         154 ELA  156 (158)
T ss_pred             HHh
Confidence            753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR00436 era GTP-binding protein Era

Probab=99.80  E-value=9.4e-19  Score=134.57  Aligned_cols=124  Identities=18%  Similarity=0.065  Sum_probs=88.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh-H-------HHHHhhhCCC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR-S-------YWRNYFESTD   91 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~-~-------~~~~~~~~~~   91 (171)
                      +|+++|.+|||||||++++.+                    ....+.++.+|||||..... .       ....+++++|
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD   81 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD   81 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence            689999999999999999998                    11233568999999964321 1       1335578999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHH---------HHhhhccCCCHHHH
Q psy11510         92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-PEDIKNV---------SEKATKVKLNKQSK  161 (171)
Q Consensus        92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~---------~~~sa~~~~~v~~~  161 (171)
                      ++++|+|+++..+.+   +++...+..   .+.|+++|+||+|+.+... .+....+         ...||++|.|++++
T Consensus        82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L  155 (270)
T TIGR00436        82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFL  155 (270)
T ss_pred             EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHH
Confidence            999999999876664   222333332   4789999999999964211 1111111         25699999999999


Q ss_pred             HHHHHHHH
Q psy11510        162 FQVLLNEV  169 (171)
Q Consensus       162 f~~l~~~i  169 (171)
                      ++.+.+.+
T Consensus       156 ~~~l~~~l  163 (270)
T TIGR00436       156 AAFIEVHL  163 (270)
T ss_pred             HHHHHHhC
Confidence            99987653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.80  E-value=4e-19  Score=124.83  Aligned_cols=123  Identities=19%  Similarity=0.133  Sum_probs=91.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH--------HHHhhhCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY--------WRNYFEST   90 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~--------~~~~~~~~   90 (171)
                      ++|+++|++|+|||||++++.+                    ....+..+.+||+||...+...        ...++.++
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA   81 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence            5899999999999999999987                    2223467899999997654321        22456789


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH---HHHHHHhhhccCCCHHHHHHHHHH
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED---IKNVSEKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~~~~~~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++|+|++++.+......+..       ..+.|+++|+||+|+.+......   .....+.||+++.|++++++.+.+
T Consensus        82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  154 (157)
T cd04164          82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLE  154 (157)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            99999999998777765543222       35799999999999976332210   112337799999999999999876


Q ss_pred             H
Q psy11510        168 E  168 (171)
Q Consensus       168 ~  168 (171)
                      .
T Consensus       155 ~  155 (157)
T cd04164         155 L  155 (157)
T ss_pred             h
Confidence            4

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.80  E-value=1.1e-18  Score=146.73  Aligned_cols=127  Identities=16%  Similarity=0.236  Sum_probs=100.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc----------------------------------c-----ccCceEEEEEecCCccc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM----------------------------------I-----MTFRFKLNIWDVGGQKS   78 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~----------------------------------~-----~~~~~~~~i~d~~g~~~   78 (171)
                      ..+|+++|..++|||||++++..                                  +     +...+.+++|||||+.+
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d   82 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD   82 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence            45899999999999999999975                                  1     12247899999999999


Q ss_pred             hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHH--------
Q psy11510         79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNV--------  147 (171)
Q Consensus        79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~--------  147 (171)
                      |...+..+++.+|++++|+|+++..+.+....|.... .    .++|+++|+||+|+.+....   +++.+.        
T Consensus        83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~v  157 (595)
T TIGR01393        83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEA  157 (595)
T ss_pred             HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceE
Confidence            9999999999999999999999977776665554433 2    46899999999999763322   223332        


Q ss_pred             HHhhhccCCCHHHHHHHHHHHH
Q psy11510        148 SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       148 ~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ...||++|.|++++|+.+++.+
T Consensus       158 i~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       158 ILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             EEeeccCCCCHHHHHHHHHHhC
Confidence            2469999999999999998754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.80  E-value=8.7e-19  Score=142.67  Aligned_cols=154  Identities=16%  Similarity=0.144  Sum_probs=106.2

Q ss_pred             eeccceeeeccceecccc-------cccCCC-------CCceeEEEEEeCCCCcHHHHHHHHhc----------------
Q psy11510         11 DVGGQKSLRSYSYYGMGM-------LRHRPQ-------VSNVAVVSLLRNKNGGETLILKKKKM----------------   60 (171)
Q Consensus        11 ~~~~~~~~~~~~~~~m~~-------~~~~~~-------~~~~~ki~liG~~~~GKttli~~~~~----------------   60 (171)
                      .+|..+.+..+|.++.|.       .+.+..       ....++|+++|.+|+|||||++++.+                
T Consensus       131 ~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~  210 (429)
T TIGR03594       131 SLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDS  210 (429)
T ss_pred             hcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECc
Confidence            455556777777666665       111111       23468999999999999999999987                


Q ss_pred             ----cccCceEEEEEecCCccchhHH-----------HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe
Q psy11510         61 ----IMTFRFKLNIWDVGGQKSLRSY-----------WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT  125 (171)
Q Consensus        61 ----~~~~~~~~~i~d~~g~~~~~~~-----------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  125 (171)
                          ....+..+.+|||||..++...           ...+++.+|++++|+|++++.+..... ++..+.    ..++|
T Consensus       211 ~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~----~~~~~  285 (429)
T TIGR03594       211 IDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLIL----EAGKA  285 (429)
T ss_pred             EeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH----HcCCc
Confidence                2233457899999997554322           123578999999999999887765542 233332    24799


Q ss_pred             EEEEEeCCCCCC-CCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510        126 LLVFANKQDIEG-ALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       126 ~ivv~nK~Dl~~-~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +++|+||+|+.+ ....+++.+.+             ++||++|.|++++|+.+.+..
T Consensus       286 iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~  343 (429)
T TIGR03594       286 LVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVY  343 (429)
T ss_pred             EEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            999999999972 21222222221             459999999999999987653

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.80  E-value=1.4e-18  Score=125.82  Aligned_cols=125  Identities=18%  Similarity=0.221  Sum_probs=94.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhHHHH
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRSYWR   84 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~~~~   84 (171)
                      +|+++|..|+|||||++.+..                                   .......+.+||+||+..+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            489999999999999999977                                   011245789999999999988899


Q ss_pred             HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH------------
Q psy11510         85 NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS------------  148 (171)
Q Consensus        85 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~------------  148 (171)
                      .+++.+|++++|+|++++.+... .+++..+..    .+.|+++|+||+|+......    +++.+.+            
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG  155 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence            99999999999999987654332 233333321    57999999999999752221    2222221            


Q ss_pred             ----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        149 ----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       149 ----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                                +.||++|.|++++|+.+.+.+
T Consensus       156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             cccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                      459999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.79  E-value=3.4e-19  Score=145.58  Aligned_cols=127  Identities=20%  Similarity=0.164  Sum_probs=96.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH--------HHHhh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY--------WRNYF   87 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~--------~~~~~   87 (171)
                      +..++|+++|.+|+|||||++++.+                    +...+.++.+|||+|.+.+...        ...++
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            3568999999999999999999987                    2234567899999998654332        22357


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH--HHHHHHhhhccCCCHHHHHHHH
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED--IKNVSEKATKVKLNKQSKFQVL  165 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~~~~sa~~~~~v~~~f~~l  165 (171)
                      +++|++++|+|++++.+++....|..       ..++|+++|+||+|+.+......  .....+.||++|.|++++++.+
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~~~L  365 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELREAI  365 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHHHHH
Confidence            88999999999999887775433322       35789999999999976322210  1123467999999999999999


Q ss_pred             HHHH
Q psy11510        166 LNEV  169 (171)
Q Consensus       166 ~~~i  169 (171)
                      .+.+
T Consensus       366 ~~~l  369 (449)
T PRK05291        366 KELA  369 (449)
T ss_pred             HHHH
Confidence            8764

>PRK11058 GTPase HflX; Provisional

Probab=99.79  E-value=2.1e-18  Score=139.84  Aligned_cols=130  Identities=21%  Similarity=0.184  Sum_probs=92.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccCc-eEEEEEecCCccch--hHHHHHh------hhCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFR-FKLNIWDVGGQKSL--RSYWRNY------FEST   90 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~-~~~~i~d~~g~~~~--~~~~~~~------~~~~   90 (171)
                      .+|+++|.+|||||||++++.+                   +...+ ..+.+|||+|..+.  ...+..|      ++++
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A  277 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA  277 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence            5899999999999999999987                   11122 26789999997432  2233333      5789


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH-HHHH-----HHHhhhccCCCHHHHHHH
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE-DIKN-----VSEKATKVKLNKQSKFQV  164 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~-~~~~-----~~~~sa~~~~~v~~~f~~  164 (171)
                      |++++|+|++++.+++.+..|.. ++......++|+++|+||+|+.+..... +...     ....||++|.|++++++.
T Consensus       278 DlIL~VvDaS~~~~~e~l~~v~~-iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~  356 (426)
T PRK11058        278 TLLLHVVDAADVRVQENIEAVNT-VLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQA  356 (426)
T ss_pred             CEEEEEEeCCCccHHHHHHHHHH-HHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHH
Confidence            99999999999887777644322 2333333579999999999996531111 1110     135799999999999999


Q ss_pred             HHHHH
Q psy11510        165 LLNEV  169 (171)
Q Consensus       165 l~~~i  169 (171)
                      +.+.+
T Consensus       357 I~~~l  361 (426)
T PRK11058        357 LTERL  361 (426)
T ss_pred             HHHHh
Confidence            98765

>KOG0077|consensus

Probab=99.78  E-value=1.8e-18  Score=120.48  Aligned_cols=117  Identities=26%  Similarity=0.485  Sum_probs=107.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      .++.-|++++|..|+|||||+..+..                +...++.+..+|.+|+..-+..|..|+..+|++++.+|
T Consensus        17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvd   96 (193)
T KOG0077|consen   17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVD   96 (193)
T ss_pred             hccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeEeeee
Confidence            56788999999999999999999998                55678899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHhh
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKA  151 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~s  151 (171)
                      +.+.++|.+....+..++........|+++.+||+|.+.+.++++.+.....+
T Consensus        97 a~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~  149 (193)
T KOG0077|consen   97 AYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLS  149 (193)
T ss_pred             hhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHH
Confidence            99999999999999999888778899999999999999999988888777443

>KOG1673|consensus

Probab=99.78  E-value=1.1e-18  Score=120.43  Aligned_cols=134  Identities=20%  Similarity=0.270  Sum_probs=110.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .-.+||-++|++..|||||+-++.+                     +.+.++.+.+||.+|++++..+.+....++-+++
T Consensus        18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIl   97 (205)
T KOG1673|consen   18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAIL   97 (205)
T ss_pred             ceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEE
Confidence            3469999999999999999999887                     6677899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH---H----HHHH--------HhhhccCCCHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED---I----KNVS--------EKATKVKLNKQ  159 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~---~----~~~~--------~~sa~~~~~v~  159 (171)
                      |+||++++++++.+.+|+.+...-. ..-+|+ +||+|.|+.-..+.+.   +    +.+.        .+|+..+.||.
T Consensus        98 FmFDLt~r~TLnSi~~WY~QAr~~N-ktAiPi-lvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~  175 (205)
T KOG1673|consen   98 FMFDLTRRSTLNSIKEWYRQARGLN-KTAIPI-LVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ  175 (205)
T ss_pred             EEEecCchHHHHHHHHHHHHHhccC-CccceE-EeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence            9999999999999999999985432 234665 5699999865444432   1    2222        34888999999


Q ss_pred             HHHHHHHHHHhC
Q psy11510        160 SKFQVLLNEVSN  171 (171)
Q Consensus       160 ~~f~~l~~~i~~  171 (171)
                      .+|.-+...++|
T Consensus       176 KIFK~vlAklFn  187 (205)
T KOG1673|consen  176 KIFKIVLAKLFN  187 (205)
T ss_pred             HHHHHHHHHHhC
Confidence            999988877764

>cd01895 EngA2 EngA2 subfamily

Probab=99.78  E-value=4.2e-18  Score=121.29  Aligned_cols=126  Identities=16%  Similarity=0.135  Sum_probs=89.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh----------HH-HHHh
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR----------SY-WRNY   86 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~----------~~-~~~~   86 (171)
                      .++|+++|.+|+|||||++++.+                    ....+..+.+||+||.....          .. ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~   81 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA   81 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence            57899999999999999999977                    12234567899999964331          11 1234


Q ss_pred             hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHH-------------Hhh
Q psy11510         87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA--LTPEDIKNVS-------------EKA  151 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~-------------~~s  151 (171)
                      +..+|++++|+|++++.+.... .++..+.    ..+.|+++++||+|+.+.  ...++.....             .+|
T Consensus        82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  156 (174)
T cd01895          82 IERADVVLLVIDATEGITEQDL-RIAGLIL----EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFIS  156 (174)
T ss_pred             HhhcCeEEEEEeCCCCcchhHH-HHHHHHH----hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEe
Confidence            6789999999999988765443 2223222    246899999999999764  2222222222             459


Q ss_pred             hccCCCHHHHHHHHHHH
Q psy11510        152 TKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       152 a~~~~~v~~~f~~l~~~  168 (171)
                      |+++.|++++++.+.+.
T Consensus       157 a~~~~~i~~~~~~l~~~  173 (174)
T cd01895         157 ALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             ccCCCCHHHHHHHHHHh
Confidence            99999999999998763

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04163 Era Era subfamily

Probab=99.78  E-value=5.9e-18  Score=119.51  Aligned_cols=127  Identities=13%  Similarity=0.125  Sum_probs=88.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH--------HHHHhhh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS--------YWRNYFE   88 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~   88 (171)
                      ...+|+++|++|+|||||++++.+                    .......+.+||+||......        .....+.
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            357899999999999999999987                    122346688999999754332        2334577


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH----------HhhhccCCC
Q psy11510         89 STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS----------EKATKVKLN  157 (171)
Q Consensus        89 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~----------~~sa~~~~~  157 (171)
                      .+|++++|+|++++.  .....++...+..   .+.|+++|+||+|+.. .....+.....          ++|++++.+
T Consensus        82 ~~d~i~~v~d~~~~~--~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          82 DVDLVLFVVDASEPI--GEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             hCCEEEEEEECCCcc--CchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            899999999999872  2222222222222   2689999999999974 22222222222          458999999


Q ss_pred             HHHHHHHHHHH
Q psy11510        158 KQSKFQVLLNE  168 (171)
Q Consensus       158 v~~~f~~l~~~  168 (171)
                      ++++++.+.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.78  E-value=1.8e-18  Score=122.08  Aligned_cols=120  Identities=20%  Similarity=0.227  Sum_probs=86.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccch------hHHHHHhh--hCCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSL------RSYWRNYF--ESTD   91 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~------~~~~~~~~--~~~~   91 (171)
                      ++|+++|.+|||||||++++.+                   +...+..+.+.|+||.-..      +.+...++  .++|
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D   80 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD   80 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence            5899999999999999999999                   4445678999999994322      22344444  5899


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH-----HhhhccCCCHHHHH
Q psy11510         92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS-----EKATKVKLNKQSKF  162 (171)
Q Consensus        92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~-----~~sa~~~~~v~~~f  162 (171)
                      +++.|+|++..+   .-.....++++    .++|++++.||+|+..    .++.+.+.+.+     .+||.++.|+++++
T Consensus        81 ~ii~VvDa~~l~---r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~  153 (156)
T PF02421_consen   81 LIIVVVDATNLE---RNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK  153 (156)
T ss_dssp             EEEEEEEGGGHH---HHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred             EEEEECCCCCHH---HHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence            999999998743   32333445543    4799999999999865    35666777766     55999999999998


Q ss_pred             HHH
Q psy11510        163 QVL  165 (171)
Q Consensus       163 ~~l  165 (171)
                      +.+
T Consensus       154 ~~I  156 (156)
T PF02421_consen  154 DAI  156 (156)
T ss_dssp             HHH
T ss_pred             hhC
Confidence            764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01889 SelB_euk SelB subfamily

Probab=99.78  E-value=6.9e-18  Score=123.46  Aligned_cols=127  Identities=18%  Similarity=0.112  Sum_probs=89.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------------------cc------------cCceEEEEEecCCccc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------------------IM------------TFRFKLNIWDVGGQKS   78 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------------------~~------------~~~~~~~i~d~~g~~~   78 (171)
                      ++|+++|..++|||||++++..                            ..            .....+.+||+||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            5899999999999999999973                            11            2267889999999876


Q ss_pred             hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHH-------
Q psy11510         79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNV-------  147 (171)
Q Consensus        79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~-------  147 (171)
                      +..........+|++++|+|+++..+......+.  +...   .+.|+++|+||+|+.....    .+++.+.       
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~  155 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK  155 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            5333334456789999999998854443322221  1111   3679999999999974221    1222211       


Q ss_pred             --------HHhhhccCCCHHHHHHHHHHHHh
Q psy11510        148 --------SEKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       148 --------~~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                              ..+||++|.|++++++.+.++|.
T Consensus       156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             cCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence                    14699999999999999988763

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.77  E-value=9.1e-18  Score=136.99  Aligned_cols=122  Identities=17%  Similarity=0.243  Sum_probs=89.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc--------hhHHHHHhhhCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS--------LRSYWRNYFEST   90 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~--------~~~~~~~~~~~~   90 (171)
                      .+|+++|.+|||||||++++.+                    ....+..+.+|||||.+.        +......++.++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a   81 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA   81 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence            4799999999999999999986                    233357789999999876        233345667899


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhhhccCCCHHHHH
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKATKVKLNKQSKF  162 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~sa~~~~~v~~~f  162 (171)
                      |++++|+|++++.+...  .++...+..   .++|+++|+||+|+.+.  .+...++        .+.||++|.|+.++|
T Consensus        82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~  154 (435)
T PRK00093         82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSLGLGEPYPISAEHGRGIGDLL  154 (435)
T ss_pred             CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhcCCCCCEEEEeeCCCCHHHHH
Confidence            99999999987544322  122233332   27899999999997651  1222222        256999999999999


Q ss_pred             HHHHH
Q psy11510        163 QVLLN  167 (171)
Q Consensus       163 ~~l~~  167 (171)
                      +.+++
T Consensus       155 ~~I~~  159 (435)
T PRK00093        155 DAILE  159 (435)
T ss_pred             HHHHh
Confidence            99876

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.76  E-value=1e-17  Score=123.79  Aligned_cols=124  Identities=14%  Similarity=0.195  Sum_probs=90.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------------cccC---------------------------c----
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------------IMTF---------------------------R----   65 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~---------------------------~----   65 (171)
                      ++|.++|..|+|||||++.+..                      ....                           .    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999865                      1100                           1    


Q ss_pred             --eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh----hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q psy11510         66 --FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK----RRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL  139 (171)
Q Consensus        66 --~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~  139 (171)
                        ..+.+||+||++.+...+...+..+|++++|+|++++    .+++.+    ..+ ...  ...|+++|+||+|+.+..
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l----~~~-~~~--~~~~iiivvNK~Dl~~~~  153 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL----AAL-EIM--GLKHIIIVQNKIDLVKEE  153 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH----HHH-HHc--CCCcEEEEEEchhccCHH
Confidence              5789999999998887777778889999999999874    233322    222 111  235799999999997522


Q ss_pred             CH----HHHHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        140 TP----EDIKNVS-----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       140 ~~----~~~~~~~-----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ..    +++.+.+           ..||++|+|++++|+.+.+.+
T Consensus       154 ~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         154 QALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             HHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            11    2233322           449999999999999998754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.76  E-value=2.2e-17  Score=138.93  Aligned_cols=129  Identities=16%  Similarity=0.235  Sum_probs=100.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------------------------c-----ccCceEEEEEecCCc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------------------------I-----MTFRFKLNIWDVGGQ   76 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------------------------~-----~~~~~~~~i~d~~g~   76 (171)
                      .+..+|+++|..++|||||+.+++.                                  +     ++..+.+++|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            3456899999999999999999974                                  1     223578999999999


Q ss_pred             cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHH------
Q psy11510         77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNV------  147 (171)
Q Consensus        77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~------  147 (171)
                      .+|...+..+++.+|++++|+|+++....+....|....     ..++|+++|+||+|+.+....   +++.+.      
T Consensus        85 ~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-----~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         85 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-----HCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcc
Confidence            999999999999999999999999876555544443322     147899999999999764322   233332      


Q ss_pred             --HHhhhccCCCHHHHHHHHHHHH
Q psy11510        148 --SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       148 --~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                        ...||++|.|+.++++.+++.+
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHhC
Confidence              2569999999999999998754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.76  E-value=1.7e-17  Score=142.41  Aligned_cols=155  Identities=16%  Similarity=0.208  Sum_probs=107.7

Q ss_pred             eeeccceeeeccceecccc-------cccCCC---------CCceeEEEEEeCCCCcHHHHHHHHhc-------------
Q psy11510         10 WDVGGQKSLRSYSYYGMGM-------LRHRPQ---------VSNVAVVSLLRNKNGGETLILKKKKM-------------   60 (171)
Q Consensus        10 ~~~~~~~~~~~~~~~~m~~-------~~~~~~---------~~~~~ki~liG~~~~GKttli~~~~~-------------   60 (171)
                      |.+|..+.++.+|.++.|.       +.....         .....||+++|.+|||||||++++.+             
T Consensus       406 ~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT  485 (712)
T PRK09518        406 WKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTT  485 (712)
T ss_pred             HHcCCCCeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCC
Confidence            3455566777888777776       111111         13458999999999999999999988             


Q ss_pred             -------cccCceEEEEEecCCccc----------hhHH-HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccC
Q psy11510         61 -------IMTFRFKLNIWDVGGQKS----------LRSY-WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA  122 (171)
Q Consensus        61 -------~~~~~~~~~i~d~~g~~~----------~~~~-~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~  122 (171)
                             ...++..+.+|||+|..+          +..+ ....++.+|++++|+|+++..+.+... ++..+..    .
T Consensus       486 ~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~  560 (712)
T PRK09518        486 RDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK-VMSMAVD----A  560 (712)
T ss_pred             cCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----c
Confidence                   123444678999999532          2222 123468899999999999988777654 3333422    4


Q ss_pred             CCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510        123 GATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       123 ~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ++|+++|+||+|+.+....+.+....             .+||++|.|++++|+.+.+..
T Consensus       561 ~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~  620 (712)
T PRK09518        561 GRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEAL  620 (712)
T ss_pred             CCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            79999999999997632222222221             459999999999999988764

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=2.9e-17  Score=132.72  Aligned_cols=131  Identities=21%  Similarity=0.168  Sum_probs=93.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccc----hhHHHHHh---hhCCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKS----LRSYWRNY---FESTD   91 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~----~~~~~~~~---~~~~~   91 (171)
                      ..|+++|.+|||||||++++.+                   +... ...+.+||+||...    ...+...|   +++++
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            3899999999999999999997                   1222 46789999999632    22233444   45699


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCC-HHHHHHHH-----HhhhccCCCHHHH
Q psy11510         92 GLIWVVDSADK---RRLEDCARELHELLQEE-RLAGATLLVFANKQDIEGALT-PEDIKNVS-----EKATKVKLNKQSK  161 (171)
Q Consensus        92 ~ii~v~d~~~~---~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~-----~~sa~~~~~v~~~  161 (171)
                      ++++|+|+++.   ++++....|...+.... ...++|+++|+||+|+.+... .+++.+.+     .+||++++|++++
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL  318 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDEL  318 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHH
Confidence            99999999864   56666666666664322 235799999999999854211 12222221     5699999999999


Q ss_pred             HHHHHHHH
Q psy11510        162 FQVLLNEV  169 (171)
Q Consensus       162 f~~l~~~i  169 (171)
                      ++.+.+.+
T Consensus       319 ~~~L~~~l  326 (424)
T PRK12297        319 LYAVAELL  326 (424)
T ss_pred             HHHHHHHH
Confidence            99998765

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=1.7e-17  Score=135.88  Aligned_cols=132  Identities=23%  Similarity=0.148  Sum_probs=91.9

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccc----hhHHH---HHhhhCCC
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKS----LRSYW---RNYFESTD   91 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~----~~~~~---~~~~~~~~   91 (171)
                      ..+|+|+|.+|||||||++++.+                   +...+..+.+||+||...    ...+.   -.++++|+
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad  238 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA  238 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence            46899999999999999999986                   334557899999999521    11222   22456799


Q ss_pred             EEEEEEeCCCh----hhHHHHHHHHHHHHhcc----------ccCCCeEEEEEeCCCCCCCCCH-HHHHHH--------H
Q psy11510         92 GLIWVVDSADK----RRLEDCARELHELLQEE----------RLAGATLLVFANKQDIEGALTP-EDIKNV--------S  148 (171)
Q Consensus        92 ~ii~v~d~~~~----~s~~~~~~~~~~i~~~~----------~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~--------~  148 (171)
                      ++++|+|+++.    +.++.+..+..++....          ...++|+++|+||+|+++.... +.+...        .
T Consensus       239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf  318 (500)
T PRK12296        239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVF  318 (500)
T ss_pred             EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEE
Confidence            99999999752    34444444444443221          2357999999999999763221 122222        2


Q ss_pred             HhhhccCCCHHHHHHHHHHHH
Q psy11510        149 EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       149 ~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ..||++++|+++++..+.+.+
T Consensus       319 ~ISA~tgeGLdEL~~~L~ell  339 (500)
T PRK12296        319 EVSAASREGLRELSFALAELV  339 (500)
T ss_pred             EEECCCCCCHHHHHHHHHHHH
Confidence            559999999999999998764

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.75  E-value=5e-17  Score=118.60  Aligned_cols=129  Identities=19%  Similarity=0.186  Sum_probs=96.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cc--cCceEEEEEecCCc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IM--TFRFKLNIWDVGGQ   76 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~--~~~~~~~i~d~~g~   76 (171)
                      ++..+|+++|+.++|||||+.++..                                     ..  .....++++|+||+
T Consensus         1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~   80 (188)
T PF00009_consen    1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH   80 (188)
T ss_dssp             STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred             CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence            3678999999999999999999996                                     23  56778999999999


Q ss_pred             cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC---CHHHHHHHH-----
Q psy11510         77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL---TPEDIKNVS-----  148 (171)
Q Consensus        77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~~~-----  148 (171)
                      ..|.......+..+|++++|+|+.+...-. ..+.+..+.    ..++|+++|.||+|+....   ..+++.+.+     
T Consensus        81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~----~~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~  155 (188)
T PF00009_consen   81 EDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILR----ELGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYG  155 (188)
T ss_dssp             HHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHH----HTT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceeecccceecccccceeeeecccccccc-ccccccccc----ccccceEEeeeeccchhhhHHHHHHHHHHHhccccc
Confidence            999887778899999999999998754332 222223332    2478999999999998311   112222111     


Q ss_pred             ----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        149 ----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       149 ----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                                ..||.+|.|+.++++.+.+.+
T Consensus       156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  156 ENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence                      238999999999999987653

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.75  E-value=2.3e-17  Score=138.23  Aligned_cols=124  Identities=19%  Similarity=0.243  Sum_probs=94.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+..+|+++|..++|||||++++..                   +... ...+.+|||||++.|..++...+..+|+++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            34567899999999999999999986                   1111 227899999999999999998899999999


Q ss_pred             EEEeCCCh---hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH-----------------HHhhhcc
Q psy11510         95 WVVDSADK---RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV-----------------SEKATKV  154 (171)
Q Consensus        95 ~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----------------~~~sa~~  154 (171)
                      +|+|+++.   ++.+.+    ...    ...++|+++++||+|+++. +.+++...                 .++||++
T Consensus       164 LVVda~dgv~~qT~e~i----~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAkt  234 (587)
T TIGR00487       164 LVVAADDGVMPQTIEAI----SHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALT  234 (587)
T ss_pred             EEEECCCCCCHhHHHHH----HHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCC
Confidence            99998873   333322    221    2257999999999999763 22332222                 2569999


Q ss_pred             CCCHHHHHHHHHH
Q psy11510        155 KLNKQSKFQVLLN  167 (171)
Q Consensus       155 ~~~v~~~f~~l~~  167 (171)
                      |+|++++|+.+..
T Consensus       235 GeGI~eLl~~I~~  247 (587)
T TIGR00487       235 GDGIDELLDMILL  247 (587)
T ss_pred             CCChHHHHHhhhh
Confidence            9999999998864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK00089 era GTPase Era; Reviewed

Probab=99.74  E-value=3e-17  Score=127.47  Aligned_cols=128  Identities=15%  Similarity=0.139  Sum_probs=89.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh--------HHHHHhhh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR--------SYWRNYFE   88 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~--------~~~~~~~~   88 (171)
                      +.-.|+++|.+|||||||++++.+                    ...++..+.+|||||.....        ......+.
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~   83 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK   83 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence            456799999999999999999987                    12244788999999964432        12334567


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-CCHH-HHHHHH---------HhhhccCCC
Q psy11510         89 STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA-LTPE-DIKNVS---------EKATKVKLN  157 (171)
Q Consensus        89 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~-~~~~-~~~~~~---------~~sa~~~~~  157 (171)
                      ++|++++|+|+++..  .....++...+..   .+.|+++|+||+|+... .... .+..+.         ..||+++.|
T Consensus        84 ~~D~il~vvd~~~~~--~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~g  158 (292)
T PRK00089         84 DVDLVLFVVDADEKI--GPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDN  158 (292)
T ss_pred             cCCEEEEEEeCCCCC--ChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCC
Confidence            899999999998832  2222233333332   46899999999999732 1111 122221         459999999


Q ss_pred             HHHHHHHHHHHH
Q psy11510        158 KQSKFQVLLNEV  169 (171)
Q Consensus       158 v~~~f~~l~~~i  169 (171)
                      ++++++.+.+.+
T Consensus       159 v~~L~~~L~~~l  170 (292)
T PRK00089        159 VDELLDVIAKYL  170 (292)
T ss_pred             HHHHHHHHHHhC
Confidence            999999988754

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.74  E-value=2.1e-17  Score=119.02  Aligned_cols=113  Identities=29%  Similarity=0.440  Sum_probs=82.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-----------------c-ccCceEEEEEecCCccchhHHHHH---hhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-----------------I-MTFRFKLNIWDVGGQKSLRSYWRN---YFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-----------------~-~~~~~~~~i~d~~g~~~~~~~~~~---~~~~~~~ii~   95 (171)
                      +.-.|+++|+.|+|||+|..++..                 . ......+.+.|+||+++.+.....   +..++.+|||
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf   81 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF   81 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence            345799999999999999999998                 1 124557889999999998874333   4788999999


Q ss_pred             EEeCCC-hhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCCCCHHHHHHHHH
Q psy11510         96 VVDSAD-KRRLEDCARELHELLQEER--LAGATLLVFANKQDIEGALTPEDIKNVSE  149 (171)
Q Consensus        96 v~d~~~-~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~  149 (171)
                      |+|++. +..+.+..+++..++....  ...+|++|++||+|+..+.+...++..+|
T Consensus        82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE  138 (181)
T PF09439_consen   82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE  138 (181)
T ss_dssp             EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred             EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence            999974 5567788888888776433  35799999999999999888877777763

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.74  E-value=4.3e-17  Score=132.76  Aligned_cols=125  Identities=19%  Similarity=0.238  Sum_probs=90.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCc--------cchhHHHHHhhhCCC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQ--------KSLRSYWRNYFESTD   91 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~--------~~~~~~~~~~~~~~~   91 (171)
                      +|+++|.+|||||||++++.+                    ....+..+.+|||||.        +.+......+++++|
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad   80 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD   80 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence            589999999999999999987                    2234567899999996        334445666788999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHH-----HHHhhhccCCCHHHHHHHH
Q psy11510         92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL-TPEDIKN-----VSEKATKVKLNKQSKFQVL  165 (171)
Q Consensus        92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~-----~~~~sa~~~~~v~~~f~~l  165 (171)
                      ++++|+|+.+..+...  ..+...++.   .++|+++|+||+|+.... ...+...     ....||++|.|+.++++.+
T Consensus        81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i  155 (429)
T TIGR03594        81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAI  155 (429)
T ss_pred             EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHH
Confidence            9999999987544332  122233332   378999999999987522 2222111     1256999999999999998


Q ss_pred             HHHH
Q psy11510        166 LNEV  169 (171)
Q Consensus       166 ~~~i  169 (171)
                      .+.+
T Consensus       156 ~~~l  159 (429)
T TIGR03594       156 LELL  159 (429)
T ss_pred             HHhc
Confidence            7654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG3883|consensus

Probab=99.73  E-value=1.3e-16  Score=110.05  Aligned_cols=133  Identities=20%  Similarity=0.225  Sum_probs=104.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-----------------------cccCceEEEEEecCCccch-hHHHHHhhhCCCE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-----------------------IMTFRFKLNIWDVGGQKSL-RSYWRNYFESTDG   92 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-----------------------~~~~~~~~~i~d~~g~~~~-~~~~~~~~~~~~~   92 (171)
                      +..||+++|..++|||++++++..                       -.+..-.+.+|||.|...+ ..+...|++-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            788999999999999999999997                       1223457899999997777 5567788899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      +++||+..+++||+.+...-+.|-.......+|+++++||+|+.+  .++.+-...++        +..+.+.-..-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            999999999999998876666665555557899999999999966  45555555555        34666666777777


Q ss_pred             HHHHHHH
Q psy11510        163 QVLLNEV  169 (171)
Q Consensus       163 ~~l~~~i  169 (171)
                      ..++...
T Consensus       168 ~~l~~rl  174 (198)
T KOG3883|consen  168 TYLASRL  174 (198)
T ss_pred             HHHHHhc
Confidence            7666543

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.73  E-value=1.4e-16  Score=120.02  Aligned_cols=127  Identities=19%  Similarity=0.168  Sum_probs=89.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh-------HHHHHhhhCCCEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR-------SYWRNYFESTDGL   93 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~~~i   93 (171)
                      +|+++|.+|+|||||++++.+                   +...+..+++||+||.....       .....+++++|++
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i   81 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI   81 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence            789999999999999999998                   12356778999999974332       1234568899999


Q ss_pred             EEEEeCCChh-hHHHHHHHHH----------------------------------------HHHhccc------------
Q psy11510         94 IWVVDSADKR-RLEDCARELH----------------------------------------ELLQEER------------  120 (171)
Q Consensus        94 i~v~d~~~~~-s~~~~~~~~~----------------------------------------~i~~~~~------------  120 (171)
                      ++|+|++++. ..+.+.+.+.                                        .++.+.+            
T Consensus        82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~  161 (233)
T cd01896          82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI  161 (233)
T ss_pred             EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence            9999998755 3333322221                                        2222111            


Q ss_pred             ------------cCCCeEEEEEeCCCCCCCCCHHHHHHHH------HhhhccCCCHHHHHHHHHHHH
Q psy11510        121 ------------LAGATLLVFANKQDIEGALTPEDIKNVS------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       121 ------------~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                                  ..-+|+++|+||+|+..   .++...+.      +.||++|.|++++|+.+.+.+
T Consensus       162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         162 TVDDLIDVIEGNRVYIPCLYVYNKIDLIS---IEELDLLARQPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CHHHHHHHHhCCceEeeEEEEEECccCCC---HHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                        01369999999999854   33333322      569999999999999998753

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.73  E-value=2.8e-17  Score=140.01  Aligned_cols=124  Identities=21%  Similarity=0.268  Sum_probs=95.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cc--cCceEEEEEecCCccchhHHHHHhhhCCC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IM--TFRFKLNIWDVGGQKSLRSYWRNYFESTD   91 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~--~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   91 (171)
                      ..+..+|+++|..++|||||++++..                     ..  .....+.+|||||++.|..++..++..+|
T Consensus       241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD  320 (742)
T CHL00189        241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD  320 (742)
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence            34667999999999999999999986                     01  13478899999999999999999999999


Q ss_pred             EEEEEEeCCCh---hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH-----------------HHHhh
Q psy11510         92 GLIWVVDSADK---RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN-----------------VSEKA  151 (171)
Q Consensus        92 ~ii~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-----------------~~~~s  151 (171)
                      ++++|+|+++.   ++++.+    ..+    ...++|+++++||+|+.+. +.+++..                 ..+.|
T Consensus       321 iaILVVDA~dGv~~QT~E~I----~~~----k~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~ll~e~~g~~vpvv~VS  391 (742)
T CHL00189        321 IAILIIAADDGVKPQTIEAI----NYI----QAANVPIIVAINKIDKANA-NTERIKQQLAKYNLIPEKWGGDTPMIPIS  391 (742)
T ss_pred             EEEEEEECcCCCChhhHHHH----HHH----HhcCceEEEEEECCCcccc-CHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence            99999999874   444333    222    1257999999999999763 2222221                 12569


Q ss_pred             hccCCCHHHHHHHHHH
Q psy11510        152 TKVKLNKQSKFQVLLN  167 (171)
Q Consensus       152 a~~~~~v~~~f~~l~~  167 (171)
                      |++|.|++++|+.++.
T Consensus       392 AktG~GIdeLle~I~~  407 (742)
T CHL00189        392 ASQGTNIDKLLETILL  407 (742)
T ss_pred             CCCCCCHHHHHHhhhh
Confidence            9999999999998865

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.73  E-value=7.6e-17  Score=117.85  Aligned_cols=130  Identities=15%  Similarity=0.187  Sum_probs=89.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhcc------------------ccCceEEEEEecCCc----------cchhHHHHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMI------------------MTFRFKLNIWDVGGQ----------KSLRSYWRNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~------------------~~~~~~~~i~d~~g~----------~~~~~~~~~~   86 (171)
                      .....+|+++|.+|+|||||++++.+-                  ......+.+||+||.          +.+..+...+
T Consensus        21 ~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~  100 (196)
T PRK00454         21 PDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY  100 (196)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence            457799999999999999999999971                  011246889999994          3444455556


Q ss_pred             hhCC---CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH--------Hhh
Q psy11510         87 FEST---DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS--------EKA  151 (171)
Q Consensus        87 ~~~~---~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~--------~~s  151 (171)
                      ++.+   +++++|+|++++.+...  .++...+..   .+.|+++++||+|+...-..    +++.+.+        .+|
T Consensus       101 ~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~S  175 (196)
T PRK00454        101 LRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFS  175 (196)
T ss_pred             HHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            6544   67888899877544332  122222222   47899999999998652211    2232332        459


Q ss_pred             hccCCCHHHHHHHHHHHH
Q psy11510        152 TKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       152 a~~~~~v~~~f~~l~~~i  169 (171)
                      |+++.|++++++.+.+.+
T Consensus       176 a~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        176 SLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             cCCCCCHHHHHHHHHHHh
Confidence            999999999999987653

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.73  E-value=4.8e-17  Score=132.76  Aligned_cols=128  Identities=16%  Similarity=0.143  Sum_probs=92.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH----------H-HH
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS----------Y-WR   84 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~----------~-~~   84 (171)
                      ...++|+++|.+|+|||||++++.+                    ....+..+.+|||||..+...          . ..
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            3579999999999999999999986                    223456789999999643221          1 12


Q ss_pred             HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------Hhh
Q psy11510         85 NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKA  151 (171)
Q Consensus        85 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~s  151 (171)
                      .+++.+|++++|+|++++.+..... ++..+.+    .++|+++|+||+|+.+....+++.+.+             .+|
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S  325 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS  325 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence            3577899999999999887765542 2233322    478999999999997422222222222             459


Q ss_pred             hccCCCHHHHHHHHHHH
Q psy11510        152 TKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       152 a~~~~~v~~~f~~l~~~  168 (171)
                      |++|.|+.++|+.+.+.
T Consensus       326 A~~~~gv~~l~~~i~~~  342 (435)
T PRK00093        326 ALTGQGVDKLLEAIDEA  342 (435)
T ss_pred             CCCCCCHHHHHHHHHHH
Confidence            99999999999988754

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.73  E-value=5.5e-17  Score=139.24  Aligned_cols=124  Identities=23%  Similarity=0.321  Sum_probs=95.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+...|+++|..++|||||++++..                   +...+..+++|||||++.|..++...+..+|++++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL  366 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL  366 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence            45678899999999999999999975                   22235678999999999999999988999999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH-----------------HHHhhhccC
Q psy11510         96 VVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN-----------------VSEKATKVK  155 (171)
Q Consensus        96 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-----------------~~~~sa~~~  155 (171)
                      |+|+++   +++.+.+    ..    ....++|+++++||+|+.+. +.+.+..                 ++..||++|
T Consensus       367 VVdAddGv~~qT~e~i----~~----a~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG  437 (787)
T PRK05306        367 VVAADDGVMPQTIEAI----NH----AKAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTG  437 (787)
T ss_pred             EEECCCCCCHhHHHHH----HH----HHhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCC
Confidence            999987   3344332    11    12357999999999999763 2222221                 124599999


Q ss_pred             CCHHHHHHHHHH
Q psy11510        156 LNKQSKFQVLLN  167 (171)
Q Consensus       156 ~~v~~~f~~l~~  167 (171)
                      .|++++|+.+..
T Consensus       438 ~GI~eLle~I~~  449 (787)
T PRK05306        438 EGIDELLEAILL  449 (787)
T ss_pred             CCchHHHHhhhh
Confidence            999999998864

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.73  E-value=5.7e-17  Score=139.23  Aligned_cols=128  Identities=16%  Similarity=0.182  Sum_probs=92.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc--------hhHHHHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS--------LRSYWRNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~--------~~~~~~~~   86 (171)
                      .....+|+++|.+|||||||++++.+                    ....+..+.+|||||.+.        +......+
T Consensus       272 ~~~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        272 PKAVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            34457899999999999999999986                    122356789999999763        33344567


Q ss_pred             hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCH
Q psy11510         87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNK  158 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v  158 (171)
                      ++.+|++++|+|+++..+  .....+...+..   .++|+++|+||+|+.....  ...++.        .+||++|.|+
T Consensus       352 ~~~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg~~~~~~iSA~~g~GI  424 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLGLGEPYPISAMHGRGV  424 (712)
T ss_pred             HHhCCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcCCCCeEEEECCCCCCc
Confidence            889999999999986422  222222333332   5799999999999865321  122222        4699999999


Q ss_pred             HHHHHHHHHHH
Q psy11510        159 QSKFQVLLNEV  169 (171)
Q Consensus       159 ~~~f~~l~~~i  169 (171)
                      .++|+.+++.+
T Consensus       425 ~eLl~~i~~~l  435 (712)
T PRK09518        425 GDLLDEALDSL  435 (712)
T ss_pred             hHHHHHHHHhc
Confidence            99999998764

>cd00880 Era_like Era (E

Probab=99.73  E-value=5e-17  Score=113.53  Aligned_cols=121  Identities=19%  Similarity=0.163  Sum_probs=89.7

Q ss_pred             EEeCCCCcHHHHHHHHhc--------------------cccC-ceEEEEEecCCccchhH-------HHHHhhhCCCEEE
Q psy11510         43 LLRNKNGGETLILKKKKM--------------------IMTF-RFKLNIWDVGGQKSLRS-------YWRNYFESTDGLI   94 (171)
Q Consensus        43 liG~~~~GKttli~~~~~--------------------~~~~-~~~~~i~d~~g~~~~~~-------~~~~~~~~~~~ii   94 (171)
                      ++|+.|+|||||++++.+                    .... ...+.+||+||...+..       ....+++.+|+++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il   80 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL   80 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence            589999999999999997                    1111 45789999999776543       3345778999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHH---HH----------HhhhccCCCHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN---VS----------EKATKVKLNKQSK  161 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~---~~----------~~sa~~~~~v~~~  161 (171)
                      +|+|+++..+..... +....    ...+.|+++|+||+|+.......+..+   ..          +.|++++.|+.++
T Consensus        81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            999999987765554 22222    235899999999999977544433321   11          4599999999999


Q ss_pred             HHHHHHH
Q psy11510        162 FQVLLNE  168 (171)
Q Consensus       162 f~~l~~~  168 (171)
                      ++.+.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG4423|consensus

Probab=99.72  E-value=9.5e-19  Score=124.09  Aligned_cols=135  Identities=20%  Similarity=0.283  Sum_probs=111.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ...+|++++|..|+|||+++++...                      -+...+.+++||+.||++|..+..-|++.+++.
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~  102 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA  102 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence            4569999999999999999999987                      334456789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcccc---CCCeEEEEEeCCCCCCC-CC--HHHHHHHH---------HhhhccCCCH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERL---AGATLLVFANKQDIEGA-LT--PEDIKNVS---------EKATKVKLNK  158 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~p~ivv~nK~Dl~~~-~~--~~~~~~~~---------~~sa~~~~~v  158 (171)
                      .+|||+++..+|+....|..++-...-.   .-.|+++..||||.... ..  ...+.++.         ++|+|.+.|+
T Consensus       103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni  182 (229)
T KOG4423|consen  103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNI  182 (229)
T ss_pred             EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccCh
Confidence            9999999999999999999887543322   34788999999999762 22  23344443         7899999999


Q ss_pred             HHHHHHHHHHHh
Q psy11510        159 QSKFQVLLNEVS  170 (171)
Q Consensus       159 ~~~f~~l~~~i~  170 (171)
                      .|+...++..++
T Consensus       183 ~Ea~r~lVe~~l  194 (229)
T KOG4423|consen  183 PEAQRELVEKIL  194 (229)
T ss_pred             hHHHHHHHHHHH
Confidence            999999887664

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.72  E-value=9.9e-17  Score=134.73  Aligned_cols=122  Identities=20%  Similarity=0.156  Sum_probs=92.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.|+++|..++|||||++++.+                      +..++..+.+||+||+++|......++.++|++++|
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV   80 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV   80 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence            4689999999999999999984                      122336789999999999988888888999999999


Q ss_pred             EeCCC---hhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC----HHHHHHHH------------HhhhccCC
Q psy11510         97 VDSAD---KRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEGALT----PEDIKNVS------------EKATKVKL  156 (171)
Q Consensus        97 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~~~----~~~~~~~~------------~~sa~~~~  156 (171)
                      +|+++   +++++.+.     ++..   .++| +++|+||+|+.+...    .+++.+.+            ++||++|.
T Consensus        81 VDa~~G~~~qT~ehl~-----il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~  152 (581)
T TIGR00475        81 VDADEGVMTQTGEHLA-----VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ  152 (581)
T ss_pred             EECCCCCcHHHHHHHH-----HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence            99988   44554432     2222   3677 999999999976221    22233322            45999999


Q ss_pred             CHHHHHHHHHHH
Q psy11510        157 NKQSKFQVLLNE  168 (171)
Q Consensus       157 ~v~~~f~~l~~~  168 (171)
                      |++++++.+.+.
T Consensus       153 GI~eL~~~L~~l  164 (581)
T TIGR00475       153 GIGELKKELKNL  164 (581)
T ss_pred             CchhHHHHHHHH
Confidence            999999887654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.72  E-value=7.4e-17  Score=116.77  Aligned_cols=120  Identities=16%  Similarity=0.166  Sum_probs=79.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhcc---------ccC---------ceEEEEEecCCcc----------chhHHHHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMI---------MTF---------RFKLNIWDVGGQK----------SLRSYWRNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~---------~~~---------~~~~~i~d~~g~~----------~~~~~~~~~   86 (171)
                      ..+..+|+++|.+|+|||||++++.+.         .+.         +-.+.+||+||..          .+..+...+
T Consensus        15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   94 (179)
T TIGR03598        15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY   94 (179)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence            467899999999999999999999861         000         1146899999942          233344455


Q ss_pred             hhC---CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH----------H
Q psy11510         87 FES---TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS----------E  149 (171)
Q Consensus        87 ~~~---~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~----------~  149 (171)
                      ++.   +|++++|+|++++-+.....  +...+..   .++|+++++||+|+.....    .+++++.+          .
T Consensus        95 l~~~~~~~~ii~vvd~~~~~~~~~~~--~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~  169 (179)
T TIGR03598        95 LEKRENLKGVVLLMDIRHPLKELDLE--MLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL  169 (179)
T ss_pred             HHhChhhcEEEEEecCCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence            553   68999999998755444432  2233332   4789999999999965321    22233332          4


Q ss_pred             hhhccCCCHH
Q psy11510        150 KATKVKLNKQ  159 (171)
Q Consensus       150 ~sa~~~~~v~  159 (171)
                      +||++|+|++
T Consensus       170 ~Sa~~g~gi~  179 (179)
T TIGR03598       170 FSSLKKTGID  179 (179)
T ss_pred             EECCCCCCCC
Confidence            4888888763

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd00066 G-alpha G protein alpha subunit

Probab=99.70  E-value=2.6e-16  Score=123.53  Aligned_cols=110  Identities=21%  Similarity=0.366  Sum_probs=86.4

Q ss_pred             cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510         61 IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK----------RRLEDCARELHELLQEERLAGATLLVFA  130 (171)
Q Consensus        61 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~  130 (171)
                      +..++..+.+||++||...+..|..++.++++++||+|+++-          +++.+....+..+++.....++|+++++
T Consensus       156 f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~  235 (317)
T cd00066         156 FTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFL  235 (317)
T ss_pred             EEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEc
Confidence            344678899999999999999999999999999999999873          6788888889999988877899999999


Q ss_pred             eCCCCCC------------------CCCHHHHHHHH------------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        131 NKQDIEG------------------ALTPEDIKNVS------------------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       131 nK~Dl~~------------------~~~~~~~~~~~------------------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      ||.|+..                  +.+.+++.+++                  .++|.+..+++.+|+.+.+.|+
T Consensus       236 NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~  311 (317)
T cd00066         236 NKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL  311 (317)
T ss_pred             cChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence            9999632                  12334444443                  2256666777778777666554

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.70  E-value=4.1e-16  Score=125.22  Aligned_cols=131  Identities=18%  Similarity=0.150  Sum_probs=92.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccchh-------HHHHHhhhCCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKSLR-------SYWRNYFESTD   91 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~~~-------~~~~~~~~~~~   91 (171)
                      ..|.++|.+|||||||++++.+                   +... ...+.++|+||...-.       ...-.++++++
T Consensus       160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            3799999999999999999997                   2222 2458999999964311       11123477899


Q ss_pred             EEEEEEeCC---ChhhHHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCCCCCH-HHHHHH----------HHhhhccCC
Q psy11510         92 GLIWVVDSA---DKRRLEDCARELHELLQE-ERLAGATLLVFANKQDIEGALTP-EDIKNV----------SEKATKVKL  156 (171)
Q Consensus        92 ~ii~v~d~~---~~~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~Dl~~~~~~-~~~~~~----------~~~sa~~~~  156 (171)
                      ++++|+|++   +.+.++....|+..+... ....+.|+++|+||+|+...... +.+..+          ...||+++.
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~  319 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGL  319 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCc
Confidence            999999988   455677776776666442 12247899999999999653211 112111          145999999


Q ss_pred             CHHHHHHHHHHHH
Q psy11510        157 NKQSKFQVLLNEV  169 (171)
Q Consensus       157 ~v~~~f~~l~~~i  169 (171)
                      |++++++.+.+.+
T Consensus       320 GIdeLl~~I~~~L  332 (390)
T PRK12298        320 GVKELCWDLMTFI  332 (390)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998764

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.70  E-value=2e-16  Score=132.58  Aligned_cols=115  Identities=22%  Similarity=0.215  Sum_probs=88.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------c--cc-C----------c-----eEEEEEecCCccchhHH
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------I--MT-F----------R-----FKLNIWDVGGQKSLRSY   82 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------~--~~-~----------~-----~~~~i~d~~g~~~~~~~   82 (171)
                      -|+++|..++|||||++++.+                   .  +. .          .     ..+.+|||||++.|..+
T Consensus         6 iV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l   85 (590)
T TIGR00491         6 IVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL   85 (590)
T ss_pred             EEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH
Confidence            599999999999999999986                   0  00 0          0     12789999999999999


Q ss_pred             HHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHhhhccCCCHH
Q psy11510         83 WRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQ  159 (171)
Q Consensus        83 ~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~sa~~~~~v~  159 (171)
                      +..+++.+|++++|+|+++   +++++.+.     ++..   .++|+++++||+|+...........+.++|++++.++.
T Consensus        86 ~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~-----~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~  157 (590)
T TIGR00491        86 RKRGGALADLAILIVDINEGFKPQTQEALN-----ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ  157 (590)
T ss_pred             HHHHHhhCCEEEEEEECCcCCCHhHHHHHH-----HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence            9999999999999999987   45554432     2122   47899999999999764444455677888999887765


Q ss_pred             HHH
Q psy11510        160 SKF  162 (171)
Q Consensus       160 ~~f  162 (171)
                      .-|
T Consensus       158 ~~~  160 (590)
T TIGR00491       158 QNL  160 (590)
T ss_pred             HHH
Confidence            544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.69  E-value=1.9e-16  Score=109.68  Aligned_cols=117  Identities=14%  Similarity=0.099  Sum_probs=83.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--cccC-----ceEEEEEecCCcc----chhHHHHHhhhCCCEEEEEEeCCChhhH-HH
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--IMTF-----RFKLNIWDVGGQK----SLRSYWRNYFESTDGLIWVVDSADKRRL-ED  107 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--~~~~-----~~~~~i~d~~g~~----~~~~~~~~~~~~~~~ii~v~d~~~~~s~-~~  107 (171)
                      ||+++|+.|||||||++.+.+  ....     .+.=.++||||.-    .+....-....+||.+++|.|++++.+. ..
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP   82 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQAIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPP   82 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCCcCccceeEecccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCc
Confidence            799999999999999999999  1111     1222568999932    2222233345689999999999986542 21


Q ss_pred             HHHHHHHHHhccccCCCeEEEEEeCCCCC-CCCCHHHHHHHH---------HhhhccCCCHHHHHHHH
Q psy11510        108 CARELHELLQEERLAGATLLVFANKQDIE-GALTPEDIKNVS---------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus       108 ~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l  165 (171)
                      -   +..+      -+.|+|-|.||+|+. +..+.+..++++         +.|+.+|+|++++.+.|
T Consensus        83 ~---fa~~------f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen   83 G---FASM------FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             h---hhcc------cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence            1   1122      368999999999998 344556666666         55999999999999876

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>smart00275 G_alpha G protein alpha subunit

Probab=99.69  E-value=4.1e-16  Score=123.42  Aligned_cols=76  Identities=22%  Similarity=0.521  Sum_probs=68.2

Q ss_pred             cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510         61 IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFA  130 (171)
Q Consensus        61 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~  130 (171)
                      +...+..+.+||++|+...+..|..++.++++++||+|+++          .+++.+....+..+++.....++|+++++
T Consensus       179 f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~  258 (342)
T smart00275      179 FIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFL  258 (342)
T ss_pred             EEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEE
Confidence            45567788999999999999999999999999999999997          45788888899999988888899999999


Q ss_pred             eCCCCC
Q psy11510        131 NKQDIE  136 (171)
Q Consensus       131 nK~Dl~  136 (171)
                      ||.|+.
T Consensus       259 NK~D~~  264 (342)
T smart00275      259 NKIDLF  264 (342)
T ss_pred             ecHHhH
Confidence            999984

Subunit of G proteins that contains the guanine nucleotide binding site

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.69  E-value=6.3e-16  Score=129.92  Aligned_cols=126  Identities=18%  Similarity=0.260  Sum_probs=97.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhHHH
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRSYW   83 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~~~   83 (171)
                      -+|+++|..++|||||+.+++.                                   +.+.+..+++|||||+.+|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            3799999999999999999985                                   34456789999999999999888


Q ss_pred             HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHH------------
Q psy11510         84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNVS------------  148 (171)
Q Consensus        84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~------------  148 (171)
                      ..+++.+|++++|+|+++.. ......++..+..    .++|+++|+||+|+.+....   +++.+.+            
T Consensus        82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~  156 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF  156 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence            99999999999999998743 3444555555543    47899999999999763221   2222222            


Q ss_pred             ---HhhhccCC----------CHHHHHHHHHHHH
Q psy11510        149 ---EKATKVKL----------NKQSKFQVLLNEV  169 (171)
Q Consensus       149 ---~~sa~~~~----------~v~~~f~~l~~~i  169 (171)
                         ..||++|.          |+..+|+.+++.+
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence               34788885          7999998887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.68  E-value=2.4e-16  Score=128.36  Aligned_cols=126  Identities=16%  Similarity=0.077  Sum_probs=88.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .++.++|+++|..++|||||+.+++.                                                  +..+
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            56789999999999999999999974                                                  2223


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCCCC---
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAR-ELHELLQEERLAGATLLVFANKQDIEGALT---  140 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~---  140 (171)
                      +..+.+||+||+++|.......+..+|++++|+|+++.+++...+. +...+....  ...|+++++||+|+.+...   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~  161 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEF  161 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHH
Confidence            5789999999999887655666789999999999998754321111 111222221  2358999999999975211   


Q ss_pred             ---HHHHHHHH-------------HhhhccCCCHHHHH
Q psy11510        141 ---PEDIKNVS-------------EKATKVKLNKQSKF  162 (171)
Q Consensus       141 ---~~~~~~~~-------------~~sa~~~~~v~~~f  162 (171)
                         .+++.+++             ++||++|.|+.+.+
T Consensus       162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence               12233322             34999999998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG1159 Era GTPase [General function prediction only]

Probab=99.68  E-value=7.7e-16  Score=117.15  Aligned_cols=128  Identities=15%  Similarity=0.133  Sum_probs=91.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh--------HHHHHhh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR--------SYWRNYF   87 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~--------~~~~~~~   87 (171)
                      .+.--|+++|.+|||||||+|++.+                    ...++.++.+.||||-..-+        ......+
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            3556799999999999999999999                    45568889999999943211        1233446


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHH----------HhhhccCC
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-PEDIKNVS----------EKATKVKL  156 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~----------~~sa~~~~  156 (171)
                      .++|+++||+|++.+..-  -.+++.+.+..   .+.|++++.||+|...... ...+.+..          ..||++|.
T Consensus        84 ~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          84 KDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             ccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            789999999999884332  22223333332   4689999999999877443 23333333          34999999


Q ss_pred             CHHHHHHHHHHH
Q psy11510        157 NKQSKFQVLLNE  168 (171)
Q Consensus       157 ~v~~~f~~l~~~  168 (171)
                      |++.+.+.+...
T Consensus       159 n~~~L~~~i~~~  170 (298)
T COG1159         159 NVDTLLEIIKEY  170 (298)
T ss_pred             CHHHHHHHHHHh
Confidence            999999887653

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.67  E-value=8.1e-16  Score=132.40  Aligned_cols=124  Identities=20%  Similarity=0.192  Sum_probs=90.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHH----------HHHhh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSY----------WRNYF   87 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~----------~~~~~   87 (171)
                      +.++|+++|++|||||||++++.+                   ....+..+++||+||..++...          ...++
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l   81 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence            457899999999999999999998                   3455678999999998766431          22333


Q ss_pred             --hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH-----HhhhccCC
Q psy11510         88 --ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS-----EKATKVKL  156 (171)
Q Consensus        88 --~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~-----~~sa~~~~  156 (171)
                        .++|++++|+|+++.++-   ..+..++.+    .++|+++++||+|+.+...    .+++.+.+     ..|+.+|+
T Consensus        82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~  154 (772)
T PRK09554         82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGR  154 (772)
T ss_pred             hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCC
Confidence              379999999999885432   233444432    4799999999999975222    12222222     45999999


Q ss_pred             CHHHHHHHHHH
Q psy11510        157 NKQSKFQVLLN  167 (171)
Q Consensus       157 ~v~~~f~~l~~  167 (171)
                      |++++.+.+.+
T Consensus       155 GIdeL~~~I~~  165 (772)
T PRK09554        155 GIEALKLAIDR  165 (772)
T ss_pred             CHHHHHHHHHH
Confidence            99999988765

>cd04169 RF3 RF3 subfamily

Probab=99.67  E-value=7.4e-16  Score=118.24  Aligned_cols=97  Identities=19%  Similarity=0.281  Sum_probs=75.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEecCCcc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      .+|+++|..|+|||||+++++.                                         +...+..+++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            4799999999999999999974                                         23446889999999999


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT  140 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~  140 (171)
                      +|.......++.+|++++|+|+++.... ....++... .   ..++|+++++||+|+.....
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~-~---~~~~P~iivvNK~D~~~a~~  140 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC-R---LRGIPIITFINKLDREGRDP  140 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH-H---hcCCCEEEEEECCccCCCCH
Confidence            9888777778999999999999875322 222323222 2   24789999999999977543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK10218 GTP-binding protein; Provisional

Probab=99.67  E-value=2.2e-15  Score=126.72  Aligned_cols=127  Identities=17%  Similarity=0.234  Sum_probs=95.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhH
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRS   81 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~   81 (171)
                      +..+|+++|..++|||||+.+++.                                   +...+..+++||+||+.+|..
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~   83 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG   83 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence            457899999999999999999985                                   234567899999999999999


Q ss_pred             HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHH----------
Q psy11510         82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNVS----------  148 (171)
Q Consensus        82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~----------  148 (171)
                      .+..+++.+|++++|+|+++.... ....++.....    .++|.++++||+|+.++...   +++.+.+          
T Consensus        84 ~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~  158 (607)
T PRK10218         84 EVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL  158 (607)
T ss_pred             HHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence            999999999999999999875332 22333343332    47899999999999764332   2233332          


Q ss_pred             -----HhhhccCC----------CHHHHHHHHHHH
Q psy11510        149 -----EKATKVKL----------NKQSKFQVLLNE  168 (171)
Q Consensus       149 -----~~sa~~~~----------~v~~~f~~l~~~  168 (171)
                           ..||.+|.          ++..+++.+++.
T Consensus       159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~  193 (607)
T PRK10218        159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH  193 (607)
T ss_pred             CCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence                 23888887          577888777654

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.67  E-value=1.1e-15  Score=115.43  Aligned_cols=94  Identities=19%  Similarity=0.241  Sum_probs=76.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhHH
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRSY   82 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~~   82 (171)
                      +|+++|..|+|||||++++..                                     +...+.++++|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            589999999999999999975                                     2345678999999999999988


Q ss_pred             HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      +..+++.+|++++|+|+++.... ....++..+ ..   .++|+++++||+|+..+
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~-~~---~~~P~iivvNK~D~~~a  131 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLL-RK---LNIPTIIFVNKIDRAGA  131 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHH-HH---cCCCEEEEEECccccCC
Confidence            89999999999999999886543 233334433 22   47899999999999753

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.67  E-value=8.6e-16  Score=128.99  Aligned_cols=125  Identities=21%  Similarity=0.184  Sum_probs=93.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccC--------c-----e-----EEEEEecCCccch
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTF--------R-----F-----KLNIWDVGGQKSL   79 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~--------~-----~-----~~~i~d~~g~~~~   79 (171)
                      +...|+++|..++|||||++++.+                   .+..        .     .     .+.+|||||++.|
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f   84 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAF   84 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHH
Confidence            344699999999999999999986                   0000        0     0     1689999999999


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHhhhccCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKL  156 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~sa~~~~  156 (171)
                      ..++...+..+|++++|+|+++   +++++.+..     +..   .++|+++++||+|+........-..+.+++++++.
T Consensus        85 ~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~-----~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         85 TNLRKRGGALADIAILVVDINEGFQPQTIEAINI-----LKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH-----HHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            9999888899999999999987   566655431     122   47899999999998643333333456788888888


Q ss_pred             CHHHHHHHHHHHH
Q psy11510        157 NKQSKFQVLLNEV  169 (171)
Q Consensus       157 ~v~~~f~~l~~~i  169 (171)
                      ++.+.|+.....+
T Consensus       157 ~v~~~f~~~l~ev  169 (586)
T PRK04004        157 RVQQELEEKLYEL  169 (586)
T ss_pred             HHHHHHHHHHHHH
Confidence            8888887766554

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.67  E-value=1e-15  Score=122.32  Aligned_cols=156  Identities=17%  Similarity=0.201  Sum_probs=115.1

Q ss_pred             eeeeeccceeeeccceecccc-------cccC-CC----CC---ceeEEEEEeCCCCcHHHHHHHHhc------------
Q psy11510          8 NIWDVGGQKSLRSYSYYGMGM-------LRHR-PQ----VS---NVAVVSLLRNKNGGETLILKKKKM------------   60 (171)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~m~~-------~~~~-~~----~~---~~~ki~liG~~~~GKttli~~~~~------------   60 (171)
                      +-|.+|.+++++.+|.|+-|.       +..+ ..    ..   ..+||+++|-+++|||||+|++++            
T Consensus       133 efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGT  212 (444)
T COG1160         133 EFYSLGFGEPVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGT  212 (444)
T ss_pred             HHHhcCCCCceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCc
Confidence            358899999999999999888       3332 11    21   469999999999999999999999            


Q ss_pred             --------cccCceEEEEEecCCccchhHH-----------HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhcccc
Q psy11510         61 --------IMTFRFKLNIWDVGGQKSLRSY-----------WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERL  121 (171)
Q Consensus        61 --------~~~~~~~~~i~d~~g~~~~~~~-----------~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~  121 (171)
                              ...++-++.+.||+|..+-...           ....+..+|.+++|+|++.+-+-+.. . +..+..   .
T Consensus       213 TRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~-~-ia~~i~---~  287 (444)
T COG1160         213 TRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDL-R-IAGLIE---E  287 (444)
T ss_pred             cccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHH-H-HHHHHH---H
Confidence                    4556778899999995432222           22346789999999999998655443 2 222222   2


Q ss_pred             CCCeEEEEEeCCCCCCC--CCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHH
Q psy11510        122 AGATLLVFANKQDIEGA--LTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       122 ~~~p~ivv~nK~Dl~~~--~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      .+.++++|.||+|+.+.  ...++.++.+             ..||++|.++.++|+.+.+.
T Consensus       288 ~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~  349 (444)
T COG1160         288 AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEI  349 (444)
T ss_pred             cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence            58999999999998764  3444443333             33999999999999988653

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.67  E-value=3.7e-16  Score=131.48  Aligned_cols=117  Identities=18%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             eCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHH------HHHhhh--CCCEEEEEE
Q psy11510         45 RNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSY------WRNYFE--STDGLIWVV   97 (171)
Q Consensus        45 G~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~------~~~~~~--~~~~ii~v~   97 (171)
                      |++|||||||++++.+                   ...++..+++||+||+.++...      ...++.  ++|++++|+
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv   80 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV   80 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence            8999999999999997                   2234556899999999876543      444443  799999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CC--HHHHHHH-----HHhhhccCCCHHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA--LT--PEDIKNV-----SEKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~~--~~~~~~~-----~~~sa~~~~~v~~~f~~l~~~  168 (171)
                      |+++.+.   ...+..++.+    .++|+++|+||+|+.+.  ..  .+++.+.     .++||++|.|++++++.+++.
T Consensus        81 Dat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437        81 DASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA  153 (591)
T ss_pred             cCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            9987432   2233334422    47999999999998652  22  2222222     267999999999999999864

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.67  E-value=1.2e-15  Score=123.57  Aligned_cols=130  Identities=15%  Similarity=0.137  Sum_probs=93.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--c---------------c-------------------c------------CceE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--I---------------M-------------------T------------FRFK   67 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--~---------------~-------------------~------------~~~~   67 (171)
                      ++.++|+++|..++|||||++.+..  .               .                   .            ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            5789999999999999999999975  0               0                   0            1357


Q ss_pred             EEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHH
Q psy11510         68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PED  143 (171)
Q Consensus        68 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~  143 (171)
                      +.+||+||+++|...+......+|++++|+|++++....+..+.+..+ ...  ...|+++++||+|+.+...    .++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~  158 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE  158 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence            899999999999887777788899999999998643111222222222 211  2357899999999975211    233


Q ss_pred             HHHHH-----------HhhhccCCCHHHHHHHHHHH
Q psy11510        144 IKNVS-----------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       144 ~~~~~-----------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      +.+++           ..||++|+|++++++.+...
T Consensus       159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~  194 (406)
T TIGR03680       159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKF  194 (406)
T ss_pred             HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHh
Confidence            33332           34999999999999998764

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG0096|consensus

Probab=99.67  E-value=7.8e-17  Score=114.65  Aligned_cols=132  Identities=17%  Similarity=0.254  Sum_probs=111.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ...+|++++|..|.||||++++...                     .+.+.+.+..||+.|++.+.-....|+=...+.|
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            4589999999999999999999987                     3445699999999999999999999998999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC------CHHHH--HHHHHhhhccCCCHHHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL------TPEDI--KNVSEKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~------~~~~~--~~~~~~sa~~~~~v~~~f~~l~  166 (171)
                      ++||++...++..+.+|.+++....  .++|++++|||.|.....      +....  ..+.+.||+.+-|.+.-|-+++
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~La  165 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLA  165 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHh
Confidence            9999999999999999999997653  579999999999987632      11111  1223679999999999999999


Q ss_pred             HHH
Q psy11510        167 NEV  169 (171)
Q Consensus       167 ~~i  169 (171)
                      +.+
T Consensus       166 rKl  168 (216)
T KOG0096|consen  166 RKL  168 (216)
T ss_pred             hhh
Confidence            865

>KOG1707|consensus

Probab=99.66  E-value=1.8e-15  Score=123.39  Aligned_cols=135  Identities=14%  Similarity=0.130  Sum_probs=105.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      .++.++|+++|+.|||||||+-.+..                   ...+.+...+.|++..+.-+.....-++.+|++.+
T Consensus         6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l   85 (625)
T KOG1707|consen    6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL   85 (625)
T ss_pred             CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence            46789999999999999999999998                   44456778999998776655555666899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCCC-CC---H---------HHHHHHHHhhhccCCCHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEER--LAGATLLVFANKQDIEGA-LT---P---------EDIKNVSEKATKVKLNKQS  160 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~~-~~---~---------~~~~~~~~~sa~~~~~v~~  160 (171)
                      +|+.+++.+++.+...+..++.+..  ..++|+|+||||+|.... ..   .         .+++...++||++-.|+.+
T Consensus        86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e  165 (625)
T KOG1707|consen   86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSE  165 (625)
T ss_pred             EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHh
Confidence            9999999999998854444444432  257999999999999762 11   1         1233334889999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +|--.-+++
T Consensus       166 ~fYyaqKaV  174 (625)
T KOG1707|consen  166 LFYYAQKAV  174 (625)
T ss_pred             hhhhhhhee
Confidence            998766554

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.65  E-value=3.7e-15  Score=119.09  Aligned_cols=123  Identities=16%  Similarity=0.174  Sum_probs=89.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh---------HHHHHhhhC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR---------SYWRNYFES   89 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~---------~~~~~~~~~   89 (171)
                      ..|+++|-+|||||||+|++.+                    ....+..+.+.||+|-+...         ......+..
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e   83 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE   83 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence            4699999999999999999999                    23345568999999966322         123345678


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHH
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSK  161 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~  161 (171)
                      ||+++||+|....-+-.+  +.+.+++..   .++|+++|+||+|-..  ..+...++.        ..||.+|.|+.++
T Consensus        84 ADvilfvVD~~~Git~~D--~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efyslG~g~~~~ISA~Hg~Gi~dL  156 (444)
T COG1160          84 ADVILFVVDGREGITPAD--EEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSLGFGEPVPISAEHGRGIGDL  156 (444)
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhcCCCCceEeehhhccCHHHH
Confidence            999999999877433221  223333332   4799999999999863  233344444        4499999999999


Q ss_pred             HHHHHHH
Q psy11510        162 FQVLLNE  168 (171)
Q Consensus       162 f~~l~~~  168 (171)
                      .+.+.+.
T Consensus       157 ld~v~~~  163 (444)
T COG1160         157 LDAVLEL  163 (444)
T ss_pred             HHHHHhh
Confidence            9998765

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.65  E-value=3.6e-15  Score=120.87  Aligned_cols=129  Identities=16%  Similarity=0.178  Sum_probs=91.2

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc-----------------cc-----c---------------------C-----c
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM-----------------IM-----T---------------------F-----R   65 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~-----------------~~-----~---------------------~-----~   65 (171)
                      ..++.++|+++|..++|||||+..+.+                 ..     .                     +     .
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            367899999999999999999999965                 00     0                     0     2


Q ss_pred             eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh----hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-
Q psy11510         66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK----RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-  140 (171)
Q Consensus        66 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-  140 (171)
                      ..+++||+||+++|..........+|++++|+|++++    ++.+.+.    .+ ...  ...|+++|+||+|+.+... 
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~----~l-~~~--~i~~iiVVlNK~Dl~~~~~~  157 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM----AL-DII--GIKNIVIVQNKIDLVSKERA  157 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH----HH-HHc--CCCcEEEEEEeeccccchhH
Confidence            4689999999988866544445678999999999864    3333222    11 211  2347899999999975321 


Q ss_pred             ---HHHHHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        141 ---PEDIKNVS-----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       141 ---~~~~~~~~-----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                         .+++..++           ..||++|.|++++++.+.+.+
T Consensus       158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence               12333332           359999999999999987643

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.64  E-value=2e-15  Score=123.02  Aligned_cols=126  Identities=16%  Similarity=0.107  Sum_probs=86.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .++.++|+++|..++|||||+.+++.                                                  +..+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            46889999999999999999999983                                                  2234


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----  140 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----  140 (171)
                      +..+.+|||||+++|.......+..+|++++|+|+++...+.....+...+....  ...|+++++||+|+.+...    
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~  160 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE  160 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence            6789999999998886544445678999999999987312211111112222221  2247999999999975111    


Q ss_pred             --HHHHHHHH-------------HhhhccCCCHHHHH
Q psy11510        141 --PEDIKNVS-------------EKATKVKLNKQSKF  162 (171)
Q Consensus       141 --~~~~~~~~-------------~~sa~~~~~v~~~f  162 (171)
                        .+++.+.+             ..||++|.|+.+.+
T Consensus       161 ~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        161 EVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence              12333332             34999999998744

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.63  E-value=5.2e-15  Score=110.61  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=74.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------------------------cc--------cCceEEEEEecC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------------------------IM--------TFRFKLNIWDVG   74 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------------------------~~--------~~~~~~~i~d~~   74 (171)
                      +|+++|..++|||||+.+++.                                     ..        +....+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            689999999999999999974                                     11        226788999999


Q ss_pred             CccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         75 GQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        75 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      |+..|......+++.+|++++|+|+++..+.+. ...+.....    .++|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence            999999988999999999999999998765543 222333322    368999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.63  E-value=3.1e-15  Score=119.82  Aligned_cols=129  Identities=16%  Similarity=0.150  Sum_probs=96.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH--------HHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY--------WRNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~--------~~~~   86 (171)
                      -+..+|++++|.+|||||||+|.+.+                    +.-.++++.+.||+|.+.....        ....
T Consensus       214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            45789999999999999999999999                    6667899999999996643332        2234


Q ss_pred             hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH--H---HHHHhhhccCCCHHHH
Q psy11510         87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI--K---NVSEKATKVKLNKQSK  161 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~--~---~~~~~sa~~~~~v~~~  161 (171)
                      ++.||.+++|+|.+.+.+-.... .+.     ....++|+++|.||.|+.........  .   .....|+++|+|++.+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~-~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L  367 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLA-LIE-----LLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDAL  367 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHH-HHH-----hcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHH
Confidence            67899999999999863222211 111     22367999999999999885443322  1   1246799999999999


Q ss_pred             HHHHHHHH
Q psy11510        162 FQVLLNEV  169 (171)
Q Consensus       162 f~~l~~~i  169 (171)
                      .+.+.+.+
T Consensus       368 ~~~i~~~~  375 (454)
T COG0486         368 REAIKQLF  375 (454)
T ss_pred             HHHHHHHH
Confidence            98887654

>cd04167 Snu114p Snu114p subfamily

Probab=99.63  E-value=4.9e-15  Score=110.15  Aligned_cols=92  Identities=20%  Similarity=0.247  Sum_probs=73.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------------------------c-----ccCceEEEEEecCCc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------------------------I-----MTFRFKLNIWDVGGQ   76 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------------------------~-----~~~~~~~~i~d~~g~   76 (171)
                      +|+++|..|+|||||+.++..                                      .     +.....+++||+||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999864                                      0     123578899999999


Q ss_pred             cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      .+|......++..+|++++|+|+++..+... ..++.....    .++|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            9998888888999999999999988765533 333333322    358999999999985

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.63  E-value=7.5e-15  Score=103.84  Aligned_cols=122  Identities=16%  Similarity=0.150  Sum_probs=81.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc------c------------ccCceEEEEEecCCcc----------chhHHHHHhhh---
Q psy11510         40 VVSLLRNKNGGETLILKKKKM------I------------MTFRFKLNIWDVGGQK----------SLRSYWRNYFE---   88 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~------~------------~~~~~~~~i~d~~g~~----------~~~~~~~~~~~---   88 (171)
                      .|+++|..|+|||||++.+.+      .            ......+.+||+||..          .+......++.   
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE   80 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence            489999999999999999993      0            0011167789999943          24444455554   


Q ss_pred             CCCEEEEEEeCCChhhH--HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH----------Hhhh
Q psy11510         89 STDGLIWVVDSADKRRL--EDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS----------EKAT  152 (171)
Q Consensus        89 ~~~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~----------~~sa  152 (171)
                      +.+++++++|.+...+.  ..+.+|+..       .+.|+++++||+|+...-..    ......+          .+|+
T Consensus        81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa  153 (170)
T cd01876          81 NLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS  153 (170)
T ss_pred             hhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence            46788999998765322  223333332       25899999999999542111    1222111          5599


Q ss_pred             ccCCCHHHHHHHHHHH
Q psy11510        153 KVKLNKQSKFQVLLNE  168 (171)
Q Consensus       153 ~~~~~v~~~f~~l~~~  168 (171)
                      +++.+++++++.+.+.
T Consensus       154 ~~~~~~~~l~~~l~~~  169 (170)
T cd01876         154 LKGQGIDELRALIEKW  169 (170)
T ss_pred             CCCCCHHHHHHHHHHh
Confidence            9999999999999764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.62  E-value=5.4e-15  Score=109.60  Aligned_cols=117  Identities=17%  Similarity=0.049  Sum_probs=79.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----c----------------------------------------------ccCceEEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----I----------------------------------------------MTFRFKLN   69 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----~----------------------------------------------~~~~~~~~   69 (171)
                      +|+++|..|+|||||+++++.    +                                              ...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            589999999999999999975    1                                              12344789


Q ss_pred             EEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC------HHH
Q psy11510         70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT------PED  143 (171)
Q Consensus        70 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~------~~~  143 (171)
                      +|||||+++|.......++.+|++++|+|++++..-. ... ...+....  ...++++|+||+|+.+...      .++
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~  156 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD  156 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence            9999999888666666788999999999998753211 111 11222221  1245788999999975211      112


Q ss_pred             HHHH-----------HHhhhccCCCHHH
Q psy11510        144 IKNV-----------SEKATKVKLNKQS  160 (171)
Q Consensus       144 ~~~~-----------~~~sa~~~~~v~~  160 (171)
                      +.+.           ...||++|.|+.+
T Consensus       157 ~~~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         157 YLAFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            2221           1458999988864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.60  E-value=5.3e-15  Score=110.47  Aligned_cols=95  Identities=17%  Similarity=0.182  Sum_probs=69.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccCceEEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTFRFKLN   69 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~~~~~~   69 (171)
                      +|+++|..++|||||+.+++.                                                  +...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            489999999999999998853                                                  223567899


Q ss_pred             EEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---L---EDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        70 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      +||+||+..|...+...++.+|++++|+|+++...   |   ....+.+. +...  ...+|+++++||+|+..
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~iiivvNK~Dl~~  151 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART--LGVKQLIVAVNKMDDVT  151 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH--cCCCeEEEEEEcccccc
Confidence            99999998887766677788999999999988421   1   11122111 1121  12368999999999974

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG0090|consensus

Probab=99.60  E-value=1e-14  Score=105.94  Aligned_cols=113  Identities=26%  Similarity=0.337  Sum_probs=88.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhh---CCCEEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFE---STDGLIWV   96 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~~ii~v   96 (171)
                      .+.-.|+++|+.+||||+|..++..                .....-..++.|.||+.+.+.....++.   .+-+++||
T Consensus        36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFV  115 (238)
T KOG0090|consen   36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFV  115 (238)
T ss_pred             ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEE
Confidence            3446899999999999999999997                1122334789999999999987777777   79999999


Q ss_pred             EeCCC-hhhHHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510         97 VDSAD-KRRLEDCARELHELLQEE--RLAGATLLVFANKQDIEGALTPEDIKNVS  148 (171)
Q Consensus        97 ~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  148 (171)
                      +|+.. ........+++-+++-..  ....+|+++++||+|+.-+.+.+-+++.+
T Consensus       116 VDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~L  170 (238)
T KOG0090|consen  116 VDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQL  170 (238)
T ss_pred             EeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHH
Confidence            99755 334566677777776554  34679999999999998877777776665

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.58  E-value=1.4e-14  Score=120.36  Aligned_cols=101  Identities=18%  Similarity=0.267  Sum_probs=78.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEec
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDV   73 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~   73 (171)
                      ..+..+|+++|..++|||||+++++.                                         +...+..+++|||
T Consensus         7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT   86 (526)
T PRK00741          7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT   86 (526)
T ss_pred             hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence            34678999999999999999999963                                         2334678999999


Q ss_pred             CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510         74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT  140 (171)
Q Consensus        74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~  140 (171)
                      ||+.+|......+++.+|++++|+|+++...- ....++..    ....++|+++++||+|+.....
T Consensus        87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~----~~~~~iPiiv~iNK~D~~~a~~  148 (526)
T PRK00741         87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEV----CRLRDTPIFTFINKLDRDGREP  148 (526)
T ss_pred             CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHH----HHhcCCCEEEEEECCcccccCH
Confidence            99999988777788999999999999875322 12222322    2235899999999999977543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.58  E-value=3.6e-14  Score=119.87  Aligned_cols=121  Identities=21%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----------------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----------------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----------------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      -|.++|..++|||||++++.+                      . ..++..+.+||+||+++|.......+..+|++++|
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV   81 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV   81 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence            478999999999999999985                      0 11245679999999999976666668899999999


Q ss_pred             EeCCC---hhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC----HHHHHHHH-----------HhhhccCCC
Q psy11510         97 VDSAD---KRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEGALT----PEDIKNVS-----------EKATKVKLN  157 (171)
Q Consensus        97 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~~~----~~~~~~~~-----------~~sa~~~~~  157 (171)
                      +|+++   +++.+.+     .++..   .++| +++|+||+|+.+...    .+++.+.+           ..||++|.|
T Consensus        82 Vda~eg~~~qT~ehl-----~il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~g  153 (614)
T PRK10512         82 VACDDGVMAQTREHL-----AILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRG  153 (614)
T ss_pred             EECCCCCcHHHHHHH-----HHHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCC
Confidence            99987   4444333     22222   2455 679999999965211    22333332           349999999


Q ss_pred             HHHHHHHHHHH
Q psy11510        158 KQSKFQVLLNE  168 (171)
Q Consensus       158 v~~~f~~l~~~  168 (171)
                      ++++++.+.+.
T Consensus       154 I~~L~~~L~~~  164 (614)
T PRK10512        154 IDALREHLLQL  164 (614)
T ss_pred             CHHHHHHHHHh
Confidence            99999988753

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.57  E-value=3.6e-14  Score=109.04  Aligned_cols=94  Identities=17%  Similarity=0.210  Sum_probs=73.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhHH
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRSY   82 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~~   82 (171)
                      +|+++|..|+|||||+++++.                                     +...+..++++||||..++...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999974                                     2335678899999999988888


Q ss_pred             HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      +...++.+|++++|+|+.+...-.. ...+..+ .   ..++|+++++||+|+.+.
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~-~---~~~~p~ivviNK~D~~~a  131 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQA-D---RYNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHH-H---HcCCCEEEEEECCCCCCC
Confidence            8899999999999999987532221 2222222 2   247899999999999763

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>KOG0082|consensus

Probab=99.57  E-value=3e-14  Score=111.62  Aligned_cols=110  Identities=22%  Similarity=0.389  Sum_probs=87.2

Q ss_pred             cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510         61 IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFA  130 (171)
Q Consensus        61 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~  130 (171)
                      +..++..+.++|++||..-+..|...+.+++++|||+++++          .+.+.+....+..+.+.....+.++|++.
T Consensus       190 F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFL  269 (354)
T KOG0082|consen  190 FTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFL  269 (354)
T ss_pred             EEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEe
Confidence            55677889999999999999999999999999999999876          45677778889999999888999999999


Q ss_pred             eCCCCCC-----------------CCCHHHHHHHH------------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        131 NKQDIEG-----------------ALTPEDIKNVS------------------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       131 nK~Dl~~-----------------~~~~~~~~~~~------------------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      ||.|+..                 ....+++.++.                  .+.|.+..||+.+|..+.+.|.
T Consensus       270 NK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii  344 (354)
T KOG0082|consen  270 NKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTII  344 (354)
T ss_pred             ecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHH
Confidence            9999843                 12333444443                  2356667788888887776654

>TIGR00503 prfC peptide chain release factor 3

Probab=99.57  E-value=3.4e-14  Score=118.14  Aligned_cols=107  Identities=17%  Similarity=0.262  Sum_probs=79.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEec
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDV   73 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~   73 (171)
                      ..+..+|+++|..++|||||+++++.                                         ++..+..+++|||
T Consensus         8 ~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDT   87 (527)
T TIGR00503         8 VDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDT   87 (527)
T ss_pred             hccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEEC
Confidence            45678999999999999999999853                                         3345678999999


Q ss_pred             CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH
Q psy11510         74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV  147 (171)
Q Consensus        74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  147 (171)
                      ||+.+|.......++.+|++++|+|+++... .....++. +..   ..++|+++++||+|+... +.+++.+.
T Consensus        88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~-~~~---~~~~PiivviNKiD~~~~-~~~~ll~~  155 (527)
T TIGR00503        88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLME-VTR---LRDTPIFTFMNKLDRDIR-DPLELLDE  155 (527)
T ss_pred             CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHH-HHH---hcCCCEEEEEECccccCC-CHHHHHHH
Confidence            9999888766667899999999999987421 12223232 222   257899999999999753 33333333

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.56  E-value=3.3e-14  Score=109.26  Aligned_cols=94  Identities=20%  Similarity=0.205  Sum_probs=73.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhHH
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRSY   82 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~~   82 (171)
                      +|+++|..|+|||||++++..                                     ....+..+++|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            589999999999999999864                                     1234567899999999888888


Q ss_pred             HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      +..+++.+|++++|+|+++........ .+..+ .   ..++|.++++||+|+...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~-~~~~~-~---~~~~p~iivvNK~D~~~~  131 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEK-LWEFA-D---EAGIPRIIFINKMDRERA  131 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHH-H---HcCCCEEEEEECCccCCC
Confidence            888899999999999998865443222 22222 2   247899999999999874

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.56  E-value=3.5e-14  Score=106.46  Aligned_cols=96  Identities=24%  Similarity=0.311  Sum_probs=69.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------c-ccCceEEEEEecCCccchhH-----HHHHhhhCCCEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------I-MTFRFKLNIWDVGGQKSLRS-----YWRNYFESTDGL   93 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~-~~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~~~i   93 (171)
                      ||+++|+.++||||+.+-+..                    + ....+.+++||.||+..+..     .....+++++++
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L   80 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL   80 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence            799999999999999999987                    2 24567899999999976644     356678999999


Q ss_pred             EEEEeCCChhhHH---HHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         94 IWVVDSADKRRLE---DCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        94 i~v~d~~~~~s~~---~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      |||+|+.+.+..+   .+...+..+.+  ..+++.+.++.+|.|+..
T Consensus        81 IyV~D~qs~~~~~~l~~~~~~i~~l~~--~sp~~~v~vfiHK~D~l~  125 (232)
T PF04670_consen   81 IYVFDAQSDDYDEDLAYLSDCIEALRQ--YSPNIKVFVFIHKMDLLS  125 (232)
T ss_dssp             EEEEETT-STCHHHHHHHHHHHHHHHH--HSTT-EEEEEEE-CCCS-
T ss_pred             EEEEEcccccHHHHHHHHHHHHHHHHH--hCCCCeEEEEEeecccCC
Confidence            9999998544333   33333444433  347999999999999865

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.55  E-value=5.4e-14  Score=108.24  Aligned_cols=135  Identities=15%  Similarity=0.152  Sum_probs=93.4

Q ss_pred             cccCCC-CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH-------
Q psy11510         29 LRHRPQ-VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS-------   81 (171)
Q Consensus        29 ~~~~~~-~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~-------   81 (171)
                      +++++. ......|++.|.+|||||||++.+..                   +..+...+++.||||.-+-..       
T Consensus       158 l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE  237 (346)
T COG1084         158 LKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIE  237 (346)
T ss_pred             HhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHH
Confidence            666777 55788999999999999999999999                   556677899999999422110       


Q ss_pred             -HHHHhhh-CCCEEEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------
Q psy11510         82 -YWRNYFE-STDGLIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---------  148 (171)
Q Consensus        82 -~~~~~~~-~~~~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------  148 (171)
                       ..-..++ -.++|+|++|.+..+  +.+.-...+.++...   -+.|+++|.||.|..+.-..+++....         
T Consensus       238 ~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~  314 (346)
T COG1084         238 RQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPL  314 (346)
T ss_pred             HHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHHhhcccccc
Confidence             1111223 378999999998854  567777777887443   248999999999998644444444443         


Q ss_pred             HhhhccCCCHHHHHHHHH
Q psy11510        149 EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       149 ~~sa~~~~~v~~~f~~l~  166 (171)
                      ..++..+.+++..-..+.
T Consensus       315 ~~~~~~~~~~d~~~~~v~  332 (346)
T COG1084         315 KISATKGCGLDKLREEVR  332 (346)
T ss_pred             ceeeeehhhHHHHHHHHH
Confidence            224555556555544443

>COG2262 HflX GTPases [General function prediction only]

Probab=99.55  E-value=1.2e-13  Score=109.16  Aligned_cols=135  Identities=18%  Similarity=0.187  Sum_probs=97.1

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhc-------------------cc-cCceEEEEEecCC---------ccchhHHH
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKM-------------------IM-TFRFKLNIWDVGG---------QKSLRSYW   83 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~-------------------~~-~~~~~~~i~d~~g---------~~~~~~~~   83 (171)
                      +.......|.++|..|+|||||+|.+.+                   +. .++-.+.+-||.|         .+.|++..
T Consensus       187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL  266 (411)
T COG2262         187 RSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL  266 (411)
T ss_pred             hcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH
Confidence            3355678999999999999999999998                   11 2245577889998         12233333


Q ss_pred             HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHH----HHhhhccCCCH
Q psy11510         84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-PEDIKNV----SEKATKVKLNK  158 (171)
Q Consensus        84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~----~~~sa~~~~~v  158 (171)
                      +. ...+|.++.|+|++++...+.+.. ...++.+....++|+++|.||+|+..... ...+...    ...||++|+|+
T Consensus       267 EE-~~~aDlllhVVDaSdp~~~~~~~~-v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl  344 (411)
T COG2262         267 EE-VKEADLLLHVVDASDPEILEKLEA-VEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGL  344 (411)
T ss_pred             HH-hhcCCEEEEEeecCChhHHHHHHH-HHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCH
Confidence            33 347999999999999966655544 45666666667899999999999765222 2222222    24599999999


Q ss_pred             HHHHHHHHHHH
Q psy11510        159 QSKFQVLLNEV  169 (171)
Q Consensus       159 ~~~f~~l~~~i  169 (171)
                      +.+.+.|...+
T Consensus       345 ~~L~~~i~~~l  355 (411)
T COG2262         345 DLLRERIIELL  355 (411)
T ss_pred             HHHHHHHHHHh
Confidence            99999887754

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.54  E-value=2.4e-13  Score=101.85  Aligned_cols=123  Identities=14%  Similarity=0.056  Sum_probs=84.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-----------------------------------cc----------------------
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-----------------------------------IM----------------------   62 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-----------------------------------~~----------------------   62 (171)
                      ||+++|+.++|||||+.++..                                   ++                      
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999985                                   11                      


Q ss_pred             cCceEEEEEecCCccchhHHHHHhhh--CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510         63 TFRFKLNIWDVGGQKSLRSYWRNYFE--STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT  140 (171)
Q Consensus        63 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~  140 (171)
                      ..+..+.+.|+||+++|.......+.  .+|++++|+|+....+ ....+++..+ ..   .++|+++|.||+|+.+...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~  155 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI  155 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence            11356899999999988654333343  6899999999876533 1222222322 22   4689999999999854211


Q ss_pred             ----HHHHHHHH----------------------------------HhhhccCCCHHHHHHHHHH
Q psy11510        141 ----PEDIKNVS----------------------------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       141 ----~~~~~~~~----------------------------------~~sa~~~~~v~~~f~~l~~  167 (171)
                          .+++.+.+                                  .+|+.+|+|++++...|..
T Consensus       156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence                12222222                                  2399999999999877643

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.54  E-value=2e-13  Score=100.28  Aligned_cols=96  Identities=20%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhH
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRS   81 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~   81 (171)
                      +.++|+++|..++|||||+.+++.                                   ...++..+.+.||||...|..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            368999999999999999999964                                   223456789999999988876


Q ss_pred             HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      .....+..+|++++|+|+..... ....+.+..+ ..   .++| ++++.||+|+..
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~-~~---~~~~~iIvviNK~D~~~  132 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPM-PQTREHLLLA-RQ---VGVPYIVVFLNKADMVD  132 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCcEEEEEeCCCCCC
Confidence            66666788999999999987432 1122222333 22   3566 778999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.54  E-value=1.3e-13  Score=92.84  Aligned_cols=87  Identities=21%  Similarity=0.253  Sum_probs=60.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccch---------hHHHHHhhhCC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSL---------RSYWRNYFEST   90 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~---------~~~~~~~~~~~   90 (171)
                      +|+++|.+|+|||||++.+.+                    ....+..+.++|+||-..-         .......+..+
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~   80 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS   80 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence            689999999999999999998                    1234566789999995321         11122234789


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANK  132 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK  132 (171)
                      |++++|+|++++.. +...+.+..+    . .+.|+++|.||
T Consensus        81 d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK  116 (116)
T PF01926_consen   81 DLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK  116 (116)
T ss_dssp             SEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred             CEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence            99999999877322 2222223333    2 68999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK13351 elongation factor G; Reviewed

Probab=99.52  E-value=1.8e-13  Score=117.52  Aligned_cols=99  Identities=18%  Similarity=0.228  Sum_probs=80.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      ..+..+|+++|..++|||||++++..                                     +...+..+++|||||+.
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence            34678999999999999999999963                                     22346789999999999


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      +|...+..+++.+|++++|+|+++.........| ..+ .   ..++|+++++||+|+...
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~-~---~~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQA-D---RYGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHH-H---hcCCCEEEEEECCCCCCC
Confidence            9988899999999999999999987666543332 333 2   247899999999999874

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.52  E-value=1.9e-13  Score=113.92  Aligned_cols=124  Identities=19%  Similarity=0.220  Sum_probs=94.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh------HHHHHhhh--C
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR------SYWRNYFE--S   89 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~   89 (171)
                      +..+|+++|++|||||||+|++.+                   ....+-.+++.|.||.-+..      .....|+.  +
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~   81 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK   81 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence            456799999999999999999999                   44455568999999943332      23444443  5


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH-----HhhhccCCCHHH
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS-----EKATKVKLNKQS  160 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~-----~~sa~~~~~v~~  160 (171)
                      +|+++-|+|+++.++=   ...-.++++    -+.|++++.|+.|..+    .++.+.+.+.+     .++|++|.|+++
T Consensus        82 ~D~ivnVvDAtnLeRn---LyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~  154 (653)
T COG0370          82 PDLIVNVVDATNLERN---LYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE  154 (653)
T ss_pred             CCEEEEEcccchHHHH---HHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence            8999999999986432   222334443    3889999999999976    57788887777     779999999999


Q ss_pred             HHHHHHH
Q psy11510        161 KFQVLLN  167 (171)
Q Consensus       161 ~f~~l~~  167 (171)
                      +.+.+.+
T Consensus       155 l~~~i~~  161 (653)
T COG0370         155 LKRAIIE  161 (653)
T ss_pred             HHHHHHH
Confidence            9998875

>KOG0462|consensus

Probab=99.51  E-value=2.5e-13  Score=110.41  Aligned_cols=129  Identities=21%  Similarity=0.296  Sum_probs=104.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      ..+.-++.+|-.-..|||||..+++.                                     .++..+.++++||||+-
T Consensus        57 ~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHv  136 (650)
T KOG0462|consen   57 VENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHV  136 (650)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcc
Confidence            35678899999999999999999998                                     22345899999999999


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---------  148 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------  148 (171)
                      +|...-...+.-|+++++|+|++....-+...+++..+     ..+..+|.|+||+|++.+ +.++....+         
T Consensus       137 DFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-----e~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF~~~~~  210 (650)
T KOG0462|consen  137 DFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-----EAGLAIIPVLNKIDLPSA-DPERVENQLFELFDIPPA  210 (650)
T ss_pred             cccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-----HcCCeEEEeeeccCCCCC-CHHHHHHHHHHHhcCCcc
Confidence            99887677778899999999999977666666666666     247899999999999884 333333333         


Q ss_pred             ---HhhhccCCCHHHHHHHHHHHH
Q psy11510        149 ---EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       149 ---~~sa~~~~~v~~~f~~l~~~i  169 (171)
                         ..||++|.|++++++.+++.|
T Consensus       211 ~~i~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  211 EVIYVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             ceEEEEeccCccHHHHHHHHHhhC
Confidence               349999999999999998865

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.50  E-value=7e-13  Score=97.51  Aligned_cols=92  Identities=16%  Similarity=0.231  Sum_probs=61.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhcc----------c-----cC--------ceEEEEEecCCccchhHHHHHh-----hhC
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKMI----------M-----TF--------RFKLNIWDVGGQKSLRSYWRNY-----FES   89 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~~----------~-----~~--------~~~~~i~d~~g~~~~~~~~~~~-----~~~   89 (171)
                      ++||+++|.+|+|||||++.+.+.          .     ..        ...+.+||+||..........|     +.+
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~   80 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE   80 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence            478999999999999999999870          0     00        1257899999975432222222     567


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      +|++++|.+.    +|......+...+..   .+.|+++|+||+|+.
T Consensus        81 ~d~~l~v~~~----~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~  120 (197)
T cd04104          81 YDFFIIISST----RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRD  120 (197)
T ss_pred             cCEEEEEeCC----CCCHHHHHHHHHHHH---hCCCEEEEEecccch
Confidence            8998887542    233333333333333   268999999999984

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=2.2e-13  Score=110.72  Aligned_cols=121  Identities=20%  Similarity=0.228  Sum_probs=95.1

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-------------------ccc---CceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-------------------IMT---FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~---~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      .-=|.++|.-..|||||+-.+..                   +..   +.-.+.|.||||++.|..|...-.+-+|.+++
T Consensus         5 ~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaIL   84 (509)
T COG0532           5 PPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAIL   84 (509)
T ss_pred             CCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEE
Confidence            34588999999999999999998                   222   23468899999999999998888888999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------------HhhhccCC
Q psy11510         96 VVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------------EKATKVKL  156 (171)
Q Consensus        96 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------------~~sa~~~~  156 (171)
                      |+++++   |++.+.+        ++....++|+++..||+|.++..+.....+..                ..||++|+
T Consensus        85 VVa~dDGv~pQTiEAI--------~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          85 VVAADDGVMPQTIEAI--------NHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEccCCcchhHHHHH--------HHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            999988   5555544        22334699999999999999744433332322                44999999


Q ss_pred             CHHHHHHHHH
Q psy11510        157 NKQSKFQVLL  166 (171)
Q Consensus       157 ~v~~~f~~l~  166 (171)
                      |+.++++.++
T Consensus       157 Gi~eLL~~il  166 (509)
T COG0532         157 GIDELLELIL  166 (509)
T ss_pred             CHHHHHHHHH
Confidence            9999998876

>PRK12735 elongation factor Tu; Reviewed

Probab=99.48  E-value=1.2e-12  Score=105.80  Aligned_cols=99  Identities=19%  Similarity=0.159  Sum_probs=72.7

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccc
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKS   78 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~   78 (171)
                      ..++.++|+++|..++|||||++++++                                   ...++..+.++||||+++
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            367899999999999999999999973                                   123455789999999988


Q ss_pred             hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCC
Q psy11510         79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL-VFANKQDIEG  137 (171)
Q Consensus        79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~Dl~~  137 (171)
                      |..........+|++++|+|+.+... ....+.+..+ .   ..++|.+ ++.||+|+.+
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~-~---~~gi~~iivvvNK~Dl~~  142 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-R---QVGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHH-H---HcCCCeEEEEEEecCCcc
Confidence            86655566778999999999987432 2222323322 2   2367865 5799999964

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.47  E-value=5.1e-13  Score=107.16  Aligned_cols=128  Identities=16%  Similarity=0.210  Sum_probs=102.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------cccCceEEEEEecCCc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------------------------IMTFRFKLNIWDVGGQ   76 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------------------------~~~~~~~~~i~d~~g~   76 (171)
                      ++.-+..++-.-..|||||..|++.                                       -++..+.++++||||+
T Consensus         7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH   86 (603)
T COG0481           7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH   86 (603)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence            4456788899999999999999998                                       3446789999999999


Q ss_pred             cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------
Q psy11510         77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------  148 (171)
Q Consensus        77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------  148 (171)
                      -+|.-.-..-+..|.+.++|+|++..-.-+.+.+.+..+     ..+.-++-|+||+||+.+.+ +.+....        
T Consensus        87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-----e~~LeIiPViNKIDLP~Adp-ervk~eIe~~iGid~  160 (603)
T COG0481          87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-----ENNLEIIPVLNKIDLPAADP-ERVKQEIEDIIGIDA  160 (603)
T ss_pred             cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-----HcCcEEEEeeecccCCCCCH-HHHHHHHHHHhCCCc
Confidence            888665555577899999999999987777777767777     25789999999999988433 3333333        


Q ss_pred             ----HhhhccCCCHHHHHHHHHHHH
Q psy11510        149 ----EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       149 ----~~sa~~~~~v~~~f~~l~~~i  169 (171)
                          ..|||+|.||+++++.+++.|
T Consensus       161 ~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         161 SDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             chheeEecccCCCHHHHHHHHHhhC
Confidence                449999999999999998764

>PRK12736 elongation factor Tu; Reviewed

Probab=99.47  E-value=1.5e-12  Score=105.23  Aligned_cols=98  Identities=18%  Similarity=0.171  Sum_probs=72.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      .++.++|+++|..++|||||+.++.+                                   ...++..+.++|+||+++|
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            67899999999999999999999864                                   1223557899999999888


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      ..........+|++++|+|++.... ....+.+..+ ..   .++| +++++||+|+.+
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~-~~---~g~~~~IvviNK~D~~~  142 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLA-RQ---VGVPYLVVFLNKVDLVD  142 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCEEEEEEEecCCcc
Confidence            6655555678999999999987421 1112222222 22   3677 678899999864

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.46  E-value=5.8e-13  Score=114.33  Aligned_cols=99  Identities=16%  Similarity=0.210  Sum_probs=78.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      ..+..+|+++|..++|||||++++..                                     +...+..+++|||||+.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~   86 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV   86 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence            44567999999999999999999964                                     22346789999999999


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      ++...+...++.+|++++|+|+++....+.. ..+..+ .   ..++|+++++||+|+..+
T Consensus        87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~-~---~~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQA-N---RYEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHH-H---HcCCCEEEEEECCCCCCC
Confidence            9888888889999999999999886554332 222333 2   246899999999999863

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG1423|consensus

Probab=99.45  E-value=6.7e-13  Score=101.39  Aligned_cols=130  Identities=18%  Similarity=0.170  Sum_probs=87.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc------chhHHH-----
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK------SLRSYW-----   83 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~------~~~~~~-----   83 (171)
                      ..+.++|++||++|+|||||.|++.+                    +..+..++.++||||.-      ++..+.     
T Consensus        69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            46789999999999999999999999                    66778999999999932      222111     


Q ss_pred             -HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC---------------CC--HHHHH
Q psy11510         84 -RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA---------------LT--PEDIK  145 (171)
Q Consensus        84 -~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~---------------~~--~~~~~  145 (171)
                       .....+||.++.|+|+++....-.. ..+..+ ..  ..++|-++|.||.|....               ++  .-++.
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l-~~--ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~  224 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLHP-RVLHML-EE--YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ  224 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccCh-HHHHHH-HH--HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence             1225679999999999963222111 112222 11  257899999999997431               11  11111


Q ss_pred             HHH----------------------HhhhccCCCHHHHHHHHHHH
Q psy11510        146 NVS----------------------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       146 ~~~----------------------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      +..                      -.||++|+|++++-+.+..+
T Consensus       225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq  269 (379)
T KOG1423|consen  225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ  269 (379)
T ss_pred             HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence            111                      12899999999999988754

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.44  E-value=1.6e-12  Score=106.41  Aligned_cols=121  Identities=11%  Similarity=0.090  Sum_probs=86.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .+++++|+++|..++|||||+.+++.                                                  +...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            56889999999999999999988864                                                  2234


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHH-------HHHHHHHHHHhccccCCCe-EEEEEeCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLE-------DCARELHELLQEERLAGAT-LLVFANKQDIE  136 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~  136 (171)
                      +..+++.|+||+++|.......+..+|+.++|+|+++. .|+       ...+.+... .   ..++| +++++||+|+.
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~---~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-F---TLGVKQMICCCNKMDAT  158 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-H---HcCCCcEEEEEEcccCC
Confidence            56889999999999988888888999999999999873 222       222222222 1   13664 68889999986


Q ss_pred             C-CCC-------HHHHHHHH-------------HhhhccCCCHHH
Q psy11510        137 G-ALT-------PEDIKNVS-------------EKATKVKLNKQS  160 (171)
Q Consensus       137 ~-~~~-------~~~~~~~~-------------~~sa~~~~~v~~  160 (171)
                      + ..+       .+++..++             ..||.+|+|+.+
T Consensus       159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        159 TPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            3 122       22333333             238999999853

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.44  E-value=1.5e-12  Score=88.00  Aligned_cols=112  Identities=15%  Similarity=0.089  Sum_probs=83.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhccccC-ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy11510         39 AVVSLLRNKNGGETLILKKKKMIMTF-RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQ  117 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~  117 (171)
                      +|++++|..|+|||+|+.++...... ...  + -+.|   +..+...+.+.+++++.|++.++..+++..  |...+..
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~--~-~t~~---~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~   72 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPT--V-FTIG---IDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLV   72 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCc--e-ehhh---hhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHh
Confidence            58999999999999999999762221 111  0 1122   444456677889999999999999998765  6665544


Q ss_pred             ccccCCCeEEEEEeCCCCCC--CCCHHHHHHHHHhhhccCCCHH
Q psy11510        118 EERLAGATLLVFANKQDIEG--ALTPEDIKNVSEKATKVKLNKQ  159 (171)
Q Consensus       118 ~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~~~sa~~~~~v~  159 (171)
                      .. ..+.|.++++||.|+.+  ....++...+.+.|+++|.|+.
T Consensus        73 ~~-k~dl~~~~~~nk~dl~~~~~~~~~~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       73 GN-KSDLPILVGGNRDVLEEERQVATEEGLEFAETSAKTPEEGE  115 (124)
T ss_pred             cC-CCCCcEEEEeechhhHhhCcCCHHHHHHHHHHhCCCcchhh
Confidence            32 35789999999999854  4566667788899999999985

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PRK13768 GTPase; Provisional

Probab=99.43  E-value=1.5e-12  Score=99.29  Aligned_cols=101  Identities=18%  Similarity=0.141  Sum_probs=63.9

Q ss_pred             EEEEEecCCccch---hHHHHHhhhC-----CCEEEEEEeCCChhhHHHHH--HHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         67 KLNIWDVGGQKSL---RSYWRNYFES-----TDGLIWVVDSADKRRLEDCA--RELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        67 ~~~i~d~~g~~~~---~~~~~~~~~~-----~~~ii~v~d~~~~~s~~~~~--~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      .+.+||+||+...   +..++.+.+.     ++++++|+|++...+-....  .|+......  ..++|+++|+||+|+.
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~--~~~~~~i~v~nK~D~~  175 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL--RLGLPQIPVLNKADLL  175 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH--HcCCCEEEEEEhHhhc
Confidence            5789999997653   3444444433     89999999996644332221  222211111  2479999999999987


Q ss_pred             CCCCHHHHHHH--------------------------------------HHhhhccCCCHHHHHHHHHHHH
Q psy11510        137 GALTPEDIKNV--------------------------------------SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       137 ~~~~~~~~~~~--------------------------------------~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      .....++..+.                                      ...|+++++|++++.+.+.+.+
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            63222221110                                      1348889999999999987654

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.43  E-value=3.6e-12  Score=104.31  Aligned_cols=98  Identities=15%  Similarity=0.122  Sum_probs=72.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .++.++|+++|..++|||||+.+++.                                                  +...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            56889999999999999999998865                                                  2333


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhccccCCCe-EEEEEeCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---L---EDCARELHELLQEERLAGAT-LLVFANKQDIE  136 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~  136 (171)
                      +..+++.|+||+++|..........+|++++|+|++....   |   ....+.+..+ .   ..++| ++++.||+|.+
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~---~~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-F---TLGVKQMIVCINKMDDK  158 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-H---HcCCCeEEEEEEccccc
Confidence            5688999999999997777777889999999999987521   1   1222222222 2   13666 67899999964

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.42  E-value=1.9e-12  Score=106.75  Aligned_cols=124  Identities=15%  Similarity=0.042  Sum_probs=82.2

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------c
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM----------------------------------------------------I   61 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~----------------------------------------------------~   61 (171)
                      ..++.++|+++|..++|||||+.+++.                                                    .
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~  102 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF  102 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence            357789999999999999999999986                                                    1


Q ss_pred             ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-
Q psy11510         62 MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-  140 (171)
Q Consensus        62 ~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-  140 (171)
                      ..++..+.++||||+++|..........+|++++|+|+.....-.. .+. ..+....  .-.|+++++||+|+.+... 
T Consensus       103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~-~~l~~~l--g~~~iIvvvNKiD~~~~~~~  178 (474)
T PRK05124        103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRH-SFIATLL--GIKHLVVAVNKMDLVDYSEE  178 (474)
T ss_pred             ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHH-HHHHHHh--CCCceEEEEEeeccccchhH
Confidence            1223578899999998886544444689999999999976431111 111 1111111  1247899999999974211 


Q ss_pred             -HHH----HHHHH------------HhhhccCCCHHHH
Q psy11510        141 -PED----IKNVS------------EKATKVKLNKQSK  161 (171)
Q Consensus       141 -~~~----~~~~~------------~~sa~~~~~v~~~  161 (171)
                       .++    +..++            ..||++|.|+.+.
T Consensus       179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence             112    21211            2389999998764

>KOG1145|consensus

Probab=99.42  E-value=2.1e-12  Score=105.21  Aligned_cols=121  Identities=19%  Similarity=0.208  Sum_probs=98.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      +.--|-++|.-..|||||+..|.+                     .+ .+-.+.|.||||+..|..|...-..-+|.+++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            445678899999999999999998                     33 45778999999999999999888888999999


Q ss_pred             EEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------------HhhhccCC
Q psy11510         96 VVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------------EKATKVKL  156 (171)
Q Consensus        96 v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------------~~sa~~~~  156 (171)
                      |+.+.|   +++.+.+        ++....++|+++.+||+|.+++.+..-.++++                ..||++|+
T Consensus       231 VVAadDGVmpQT~EaI--------khAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~  302 (683)
T KOG1145|consen  231 VVAADDGVMPQTLEAI--------KHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGE  302 (683)
T ss_pred             EEEccCCccHhHHHHH--------HHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCC
Confidence            999888   4455444        34445799999999999999865554455554                33999999


Q ss_pred             CHHHHHHHHH
Q psy11510        157 NKQSKFQVLL  166 (171)
Q Consensus       157 ~v~~~f~~l~  166 (171)
                      |++.+-+.+.
T Consensus       303 nl~~L~eail  312 (683)
T KOG1145|consen  303 NLDLLEEAIL  312 (683)
T ss_pred             ChHHHHHHHH
Confidence            9999887765

>KOG1489|consensus

Probab=99.41  E-value=1.5e-12  Score=99.91  Aligned_cols=130  Identities=22%  Similarity=0.226  Sum_probs=93.3

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccc----hhHHHHHh---hhCC
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKS----LRSYWRNY---FEST   90 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~----~~~~~~~~---~~~~   90 (171)
                      .-.+-+||-+|+|||||++.+..                   +.++ ...+.+=|.||.-.    .+-+-..|   ++.|
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            34677999999999999999998                   2333 34488889999422    22233333   5679


Q ss_pred             CEEEEEEeCCCh---hhHHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCCCC-CCH-HHHHHHH------HhhhccCCCH
Q psy11510         91 DGLIWVVDSADK---RRLEDCARELHELLQ-EERLAGATLLVFANKQDIEGA-LTP-EDIKNVS------EKATKVKLNK  158 (171)
Q Consensus        91 ~~ii~v~d~~~~---~s~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~Dl~~~-~~~-~~~~~~~------~~sa~~~~~v  158 (171)
                      +.++||+|.+.+   +.++.++....++-. +....+.|.++|+||+|+++. .+. +++.+.+      ..||++++++
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl  355 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGL  355 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccch
Confidence            999999999998   777777665555522 344578999999999999752 221 3444444      4599999999


Q ss_pred             HHHHHHHHH
Q psy11510        159 QSKFQVLLN  167 (171)
Q Consensus       159 ~~~f~~l~~  167 (171)
                      .++...+-+
T Consensus       356 ~~ll~~lr~  364 (366)
T KOG1489|consen  356 EELLNGLRE  364 (366)
T ss_pred             HHHHHHHhh
Confidence            999887643

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.40  E-value=1.1e-11  Score=89.96  Aligned_cols=130  Identities=17%  Similarity=0.236  Sum_probs=86.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccC--ceEEEEEecCC----------ccchhHHHHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTF--RFKLNIWDVGG----------QKSLRSYWRNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~--~~~~~i~d~~g----------~~~~~~~~~~~   86 (171)
                      .....-|+++|-+|||||||++.+.+                ++.-  .-.+.+.|.||          ++....+...|
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~Y  100 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEY  100 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHH
Confidence            44677999999999999999999999                1111  11267889999          33444455556


Q ss_pred             hh---CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH-----------
Q psy11510         87 FE---STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS-----------  148 (171)
Q Consensus        87 ~~---~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~-----------  148 (171)
                      ++   +-.++++++|+..+..-  ....+-+.+.+   .++|+++++||+|.......    ..+.+.+           
T Consensus       101 L~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~  175 (200)
T COG0218         101 LEKRANLKGVVLLIDARHPPKD--LDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVV  175 (200)
T ss_pred             HhhchhheEEEEEEECCCCCcH--HHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEE
Confidence            65   35778888998775433  22223333333   48999999999998763222    2333322           


Q ss_pred             HhhhccCCCHHHHHHHHHHHH
Q psy11510        149 EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       149 ~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ..|+.++.|++++-..|.+.+
T Consensus       176 ~~ss~~k~Gi~~l~~~i~~~~  196 (200)
T COG0218         176 LFSSLKKKGIDELKAKILEWL  196 (200)
T ss_pred             EEecccccCHHHHHHHHHHHh
Confidence            237788889999888887654

>KOG1532|consensus

Probab=99.39  E-value=9.2e-12  Score=94.03  Aligned_cols=131  Identities=13%  Similarity=0.162  Sum_probs=90.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      .+++.-|+++|..|+|||||++|+..                                                      
T Consensus        16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL   95 (366)
T KOG1532|consen   16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL   95 (366)
T ss_pred             ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence            56788999999999999999999987                                                      


Q ss_pred             -------------c--ccCceEEEEEecCCccc-h------hHHHHHhh-hCCCEEEEEEeC---CChhhHHHHHHHHHH
Q psy11510         61 -------------I--MTFRFKLNIWDVGGQKS-L------RSYWRNYF-ESTDGLIWVVDS---ADKRRLEDCARELHE  114 (171)
Q Consensus        61 -------------~--~~~~~~~~i~d~~g~~~-~------~~~~~~~~-~~~~~ii~v~d~---~~~~s~~~~~~~~~~  114 (171)
                                   +  ........+.|||||-. |      .-+...+. ....++++|+|.   +++.+|-.-.-+-..
T Consensus        96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS  175 (366)
T KOG1532|consen   96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS  175 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence                         1  12335567888888632 1      11223322 246788899985   457778666666677


Q ss_pred             HHhccccCCCeEEEEEeCCCCCCC-CCHHHH------HHHH-----------------------------HhhhccCCCH
Q psy11510        115 LLQEERLAGATLLVFANKQDIEGA-LTPEDI------KNVS-----------------------------EKATKVKLNK  158 (171)
Q Consensus       115 i~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~------~~~~-----------------------------~~sa~~~~~v  158 (171)
                      ++..   .+.|.|++.||+|+.++ .-.+.+      ++++                             ..|+.+|.|.
T Consensus       176 ilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~  252 (366)
T KOG1532|consen  176 ILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF  252 (366)
T ss_pred             HHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence            7765   57999999999999763 111111      1111                             2289999999


Q ss_pred             HHHHHHHHHH
Q psy11510        159 QSKFQVLLNE  168 (171)
Q Consensus       159 ~~~f~~l~~~  168 (171)
                      ++.|..+-+.
T Consensus       253 ddf~~av~~~  262 (366)
T KOG1532|consen  253 DDFFTAVDES  262 (366)
T ss_pred             HHHHHHHHHH
Confidence            9999877543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.39  E-value=2.7e-12  Score=104.08  Aligned_cols=118  Identities=13%  Similarity=0.025  Sum_probs=79.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------cccCce
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------------------------------------------IMTFRF   66 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------------------------------------------~~~~~~   66 (171)
                      ++|+++|..++|||||+.+++.                                                    +..++.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999975                                                    112345


Q ss_pred             EEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC------
Q psy11510         67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT------  140 (171)
Q Consensus        67 ~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~------  140 (171)
                      .+.++|+||+++|.......+..+|++++|+|+.....-+ ..+.+ .+....  ...++++++||+|+.+...      
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~-~~~~~~--~~~~iivviNK~D~~~~~~~~~~~i  156 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHS-YIASLL--GIRHVVLAVNKMDLVDYDEEVFENI  156 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHH-HHHHHc--CCCcEEEEEEecccccchHHHHHHH
Confidence            7899999999988665555678999999999987653211 11111 121221  1346889999999975211      


Q ss_pred             HHHHHHHH-----------HhhhccCCCHHH
Q psy11510        141 PEDIKNVS-----------EKATKVKLNKQS  160 (171)
Q Consensus       141 ~~~~~~~~-----------~~sa~~~~~v~~  160 (171)
                      .+++..+.           ..||.+|+|+.+
T Consensus       157 ~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       157 KKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            11222111           348999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.39  E-value=6e-12  Score=101.71  Aligned_cols=98  Identities=17%  Similarity=0.154  Sum_probs=71.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      .++.++|+++|..++|||||+.++..                                   ....+..+.+||+||+++|
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            67899999999999999999999962                                   2234567899999999988


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL-VFANKQDIEG  137 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~Dl~~  137 (171)
                      ..........+|++++|+|+.+...-+ ..+.+..+ ..   .++|.+ +++||+|+.+
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~q-t~e~l~~~-~~---~gi~~iIvvvNK~Dl~~  142 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQ-TREHILLA-RQ---VGVPYIVVFLNKCDMVD  142 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHH-HH---cCCCEEEEEEEecccCC
Confidence            765555567889999999998732211 11222222 21   366755 6899999865

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK12739 elongation factor G; Reviewed

Probab=99.39  E-value=4.6e-12  Score=108.87  Aligned_cols=99  Identities=18%  Similarity=0.232  Sum_probs=77.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      ..+..+|+++|..++|||||+++++.                                     +..++..++++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            44678999999999999999999963                                     33456788999999998


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      +|...+...++.+|++++|+|+.+...-+. ...+..+ .   ..++|+++++||+|+...
T Consensus        85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~-~---~~~~p~iv~iNK~D~~~~  140 (691)
T PRK12739         85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA-D---KYGVPRIVFVNKMDRIGA  140 (691)
T ss_pred             HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH-H---HcCCCEEEEEECCCCCCC
Confidence            888888888999999999999987643322 1222222 2   247899999999999863

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.38  E-value=6.7e-12  Score=108.21  Aligned_cols=98  Identities=16%  Similarity=0.151  Sum_probs=75.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------cccCceEEEEEecCC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------------------------IMTFRFKLNIWDVGG   75 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------------------------~~~~~~~~~i~d~~g   75 (171)
                      ..+..+|+++|..++|||||+.++..                                       .+..+..+++|||||
T Consensus        16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG   95 (720)
T TIGR00490        16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG   95 (720)
T ss_pred             cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence            45678999999999999999999952                                       123467899999999


Q ss_pred             ccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         76 QKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        76 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      +.+|.......++.+|++++|+|+.+....+.. ..+....    ..+.|.++++||+|...
T Consensus        96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~----~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL----KENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHH----HcCCCEEEEEEChhccc
Confidence            999888778889999999999999874322221 1122221    24678889999999864

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.38  E-value=5.8e-12  Score=103.72  Aligned_cols=98  Identities=20%  Similarity=0.181  Sum_probs=74.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      .++.++|+++|..++|||||++++++                                   +...+..+.++|+||+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            67799999999999999999999983                                   2234567899999999998


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      .......+..+|++++|+|+.+... ....+++..+ ..   .++| ++++.||+|+.+
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~-~~---~gi~~iIvvvNK~Dl~~  211 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLA-KQ---VGVPNMVVFLNKQDQVD  211 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCeEEEEEecccccC
Confidence            7666666778999999999887532 2223333333 22   3678 778899999965

>CHL00071 tufA elongation factor Tu

Probab=99.38  E-value=8.4e-12  Score=101.30  Aligned_cols=99  Identities=19%  Similarity=0.183  Sum_probs=73.7

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccc
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKS   78 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~   78 (171)
                      ..++.++|+++|..++|||||++++++                                   ...++..+.+.|+||+.+
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence            367889999999999999999999985                                   122345678999999988


Q ss_pred             hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      |.......+..+|++++|+|+..... ....+.+..+ ..   .++| ++++.||+|+.+
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~  142 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVD  142 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCC
Confidence            86655666788999999999986432 2222223222 22   3678 778999999965

>cd01850 CDC_Septin CDC/Septin

Probab=99.37  E-value=3.2e-12  Score=98.65  Aligned_cols=95  Identities=12%  Similarity=0.186  Sum_probs=62.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-----------------------------c--ccCceEEEEEecCCccchhH---H
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-----------------------------I--MTFRFKLNIWDVGGQKSLRS---Y   82 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-----------------------------~--~~~~~~~~i~d~~g~~~~~~---~   82 (171)
                      -.++|+++|.+|+|||||++++.+                             +  ++..+.+.+|||||-.....   .
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            468999999999999999999987                             1  11225689999999322110   0


Q ss_pred             HH-----------------------Hhhh--CCCEEEEEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         83 WR-----------------------NYFE--STDGLIWVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        83 ~~-----------------------~~~~--~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      |.                       ..+.  .+|+++++++.+... +... .+.+..+ .    .++|+++|+||+|+.
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l-~----~~v~vi~VinK~D~l  156 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRL-S----KRVNIIPVIAKADTL  156 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHH-h----ccCCEEEEEECCCcC
Confidence            10                       1222  478888888876521 2121 2223344 2    268999999999985


Q ss_pred             C
Q psy11510        137 G  137 (171)
Q Consensus       137 ~  137 (171)
                      .
T Consensus       157 ~  157 (276)
T cd01850         157 T  157 (276)
T ss_pred             C
Confidence            4

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.37  E-value=1.5e-11  Score=100.83  Aligned_cols=130  Identities=12%  Similarity=0.135  Sum_probs=89.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cc------------------cC-------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IM------------------TF-------------   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~------------------~~-------------   64 (171)
                      ....++|.++|.-..|||||++.+.+                   +.                  ..             
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            46789999999999999999999997                   00                  00             


Q ss_pred             -----ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q psy11510         65 -----RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL  139 (171)
Q Consensus        65 -----~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~  139 (171)
                           ...+.+.|+||+++|..........+|++++|+|+..+.......+.+. ++...  .-.|+++|.||+|+.+..
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~l--gi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIM--KLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHc--CCCcEEEEEecccccCHH
Confidence                 1257899999999886655555678999999999987421111122222 22221  124689999999997522


Q ss_pred             C----HHHHHHHH-----------HhhhccCCCHHHHHHHHHH
Q psy11510        140 T----PEDIKNVS-----------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       140 ~----~~~~~~~~-----------~~sa~~~~~v~~~f~~l~~  167 (171)
                      .    .+++.+++           ..||.+|.|++.+++.|.+
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~  230 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICT  230 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence            1    12333322           2399999999999988874

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.37  E-value=7.2e-12  Score=106.74  Aligned_cols=122  Identities=13%  Similarity=0.055  Sum_probs=81.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----cc------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----IM------------------------------------------------   62 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----~~------------------------------------------------   62 (171)
                      .++.++|+++|..++|||||+++++.    +.                                                
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            56789999999999999999999997    11                                                


Q ss_pred             cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--
Q psy11510         63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT--  140 (171)
Q Consensus        63 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--  140 (171)
                      ..+..+.++||||++.|..........+|++++|+|+.....-+ ..+.+. ++...  ...|++++.||+|+.+...  
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~-~~~~~--~~~~iivvvNK~D~~~~~~~~  176 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSF-IASLL--GIRHVVLAVNKMDLVDYDQEV  176 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHH-HHHHh--CCCeEEEEEEecccccchhHH
Confidence            11226789999999888655555578999999999997643211 111111 11111  2367889999999964111  


Q ss_pred             H----HHHHHHH-----------HhhhccCCCHHH
Q psy11510        141 P----EDIKNVS-----------EKATKVKLNKQS  160 (171)
Q Consensus       141 ~----~~~~~~~-----------~~sa~~~~~v~~  160 (171)
                      .    +++.++.           ..||++|.|+.+
T Consensus       177 ~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        177 FDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            1    1222211           238999999874

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.36  E-value=2.9e-12  Score=103.36  Aligned_cols=75  Identities=27%  Similarity=0.473  Sum_probs=65.1

Q ss_pred             ccc-CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         61 IMT-FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        61 ~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                      +.. ....+.++|++||...+..|..++.++++|+||+++++          .+++.+....+..+.+.....+.|++++
T Consensus       230 f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~  309 (389)
T PF00503_consen  230 FNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILF  309 (389)
T ss_dssp             EEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEE
T ss_pred             EEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEe
Confidence            344 67788999999999999999999999999999999854          3568888888999999888889999999


Q ss_pred             EeCCCC
Q psy11510        130 ANKQDI  135 (171)
Q Consensus       130 ~nK~Dl  135 (171)
                      .||.|+
T Consensus       310 lnK~D~  315 (389)
T PF00503_consen  310 LNKIDL  315 (389)
T ss_dssp             EE-HHH
T ss_pred             eecHHH
Confidence            999997

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>PLN03127 Elongation factor Tu; Provisional

Probab=99.36  E-value=2e-11  Score=99.99  Aligned_cols=98  Identities=19%  Similarity=0.173  Sum_probs=71.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      .++.++|+++|..++|||||+.++.+                                   +..++..+.+.|+||+.+|
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            67899999999999999999999962                                   2233457899999999888


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      ..........+|++++|+|+.+... ....+.+..+ ..   .++| ++++.||+|+.+
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~  191 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVD  191 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCC
Confidence            6655555667999999999876432 1222222222 22   3688 578899999964

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.36  E-value=1.8e-11  Score=89.87  Aligned_cols=128  Identities=15%  Similarity=0.073  Sum_probs=79.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchh----H----HH---HHh
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLR----S----YW---RNY   86 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~----~----~~---~~~   86 (171)
                      ++|+++|.+|+||||+++.+++                     ....+..+.++||||-....    .    +.   ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4799999999999999999997                     12245678999999954331    1    11   112


Q ss_pred             hhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH--------HHHHHHHHh-------
Q psy11510         87 FESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP--------EDIKNVSEK-------  150 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~-------  150 (171)
                      ..++|++++|+++.+.. ....+.+++.+++...  .-.+++++.|++|.......        ..+....+.       
T Consensus        81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            35789999999987622 2233334444443321  23578889999987553221        222222211       


Q ss_pred             ------hhccCCCHHHHHHHHHHH
Q psy11510        151 ------ATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       151 ------sa~~~~~v~~~f~~l~~~  168 (171)
                            ++..+.++.++++.+.+.
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~  182 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESM  182 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHH
Confidence                  255567777777776543

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.34  E-value=1.4e-11  Score=94.97  Aligned_cols=132  Identities=20%  Similarity=0.182  Sum_probs=92.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH-------HHHHhhhCC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS-------YWRNYFEST   90 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~   90 (171)
                      --.++++||.+++|||||++.+.+                   +.+++.++++.|+||.-.-.+       ..-+..++|
T Consensus        62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~A  141 (365)
T COG1163          62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA  141 (365)
T ss_pred             CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence            457899999999999999999999                   678899999999998321111       123456899


Q ss_pred             CEEEEEEeCCChhh-HHHHHHHHH----------------------------------------HHHhcccc--------
Q psy11510         91 DGLIWVVDSADKRR-LEDCARELH----------------------------------------ELLQEERL--------  121 (171)
Q Consensus        91 ~~ii~v~d~~~~~s-~~~~~~~~~----------------------------------------~i~~~~~~--------  121 (171)
                      |.+++|+|+..... .+.+...+.                                        .++.+.+.        
T Consensus       142 DlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir  221 (365)
T COG1163         142 DLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIR  221 (365)
T ss_pred             CEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEe
Confidence            99999999986554 444433222                                        22222111        


Q ss_pred             ----------------CCCeEEEEEeCCCCCCCCCHHHHHHHH---HhhhccCCCHHHHHHHHHHH
Q psy11510        122 ----------------AGATLLVFANKQDIEGALTPEDIKNVS---EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       122 ----------------~~~p~ivv~nK~Dl~~~~~~~~~~~~~---~~sa~~~~~v~~~f~~l~~~  168 (171)
                                      .=+|.+.|.||.|+...-..+.+.+..   ..||+.+.|++++.+.+.+.
T Consensus       222 ~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~  287 (365)
T COG1163         222 EDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDV  287 (365)
T ss_pred             cCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHh
Confidence                            127999999999997732333333222   34999999999999988764

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.34  E-value=1.7e-11  Score=96.14  Aligned_cols=60  Identities=20%  Similarity=0.390  Sum_probs=48.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc---------------------c---------------------c-cCceEEEEEecCCc-
Q psy11510         41 VSLLRNKNGGETLILKKKKM---------------------I---------------------M-TFRFKLNIWDVGGQ-   76 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~---------------------~---------------------~-~~~~~~~i~d~~g~-   76 (171)
                      |.++|.++||||||++++.+                     .                     + ...+.+++||++|. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57999999999999999998                     1                     0 12367999999997 


Q ss_pred             ---cchhHHHHHh---hhCCCEEEEEEeCC
Q psy11510         77 ---KSLRSYWRNY---FESTDGLIWVVDSA  100 (171)
Q Consensus        77 ---~~~~~~~~~~---~~~~~~ii~v~d~~  100 (171)
                         +.+..+...+   +++||++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               5555555554   88999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0099|consensus

Probab=99.32  E-value=3.3e-12  Score=95.83  Aligned_cols=75  Identities=25%  Similarity=0.552  Sum_probs=66.9

Q ss_pred             cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510         61 IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFA  130 (171)
Q Consensus        61 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~  130 (171)
                      +.-+.++++.+|++||.+-+..|-..+.++.++|||+..++          .+++++....++.+++......+.+|++.
T Consensus       197 FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFL  276 (379)
T KOG0099|consen  197 FQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFL  276 (379)
T ss_pred             EeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEe
Confidence            44466789999999999999999999999999999998755          55788888899999999888999999999


Q ss_pred             eCCCC
Q psy11510        131 NKQDI  135 (171)
Q Consensus       131 nK~Dl  135 (171)
                      ||+|+
T Consensus       277 NKqDl  281 (379)
T KOG0099|consen  277 NKQDL  281 (379)
T ss_pred             cHHHH
Confidence            99997

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.32  E-value=6.4e-12  Score=84.18  Aligned_cols=119  Identities=12%  Similarity=0.140  Sum_probs=83.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--cccCc---eEE---EEEecCCccchhHHH----HHhhhCCCEEEEEEeCCChhhH-H
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--IMTFR---FKL---NIWDVGGQKSLRSYW----RNYFESTDGLIWVVDSADKRRL-E  106 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--~~~~~---~~~---~i~d~~g~~~~~~~~----~~~~~~~~~ii~v~d~~~~~s~-~  106 (171)
                      |+.++|..|+|||||.+++.+  .-.+.   +.+   -.+||||.---+..|    .....+++++++|-.++++.+. .
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~   82 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP   82 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhcccceeeccCccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC
Confidence            789999999999999999999  11111   122   146889832222222    2335689999999999987643 2


Q ss_pred             HHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------HhhhccCCCHHHHHHHHHH
Q psy11510        107 DCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       107 ~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l~~  167 (171)
                      ..   +..      ....|+|-|.+|+|+++..+.+..++++         ++|+.++.|++++++.+..
T Consensus        83 p~---f~~------~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917          83 PG---FLD------IGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             cc---ccc------ccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            11   111      1346799999999999755655566665         5699999999999988764

>PRK09866 hypothetical protein; Provisional

Probab=99.31  E-value=7.4e-11  Score=98.68  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=64.2

Q ss_pred             eEEEEEecCCccc-----hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-
Q psy11510         66 FKLNIWDVGGQKS-----LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL-  139 (171)
Q Consensus        66 ~~~~i~d~~g~~~-----~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~-  139 (171)
                      ..+.+.||||-..     +.......+.++|+|+||+|.....+..+  +.+.+.+... ..+.|+++|.||+|+.+.- 
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~-~K~~PVILVVNKIDl~dree  306 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAV-GQSVPLYVLVNKFDQQDRNS  306 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhc-CCCCCEEEEEEcccCCCccc
Confidence            4567889999643     12233446889999999999987433322  1122222221 1136999999999986421 


Q ss_pred             -CHHHHHHHH---------------HhhhccCCCHHHHHHHHHH
Q psy11510        140 -TPEDIKNVS---------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       140 -~~~~~~~~~---------------~~sa~~~~~v~~~f~~l~~  167 (171)
                       ..+.+.++.               ..||+.|.|++.+++.+.+
T Consensus       307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence             244444442               2389999999999988865

>PRK00049 elongation factor Tu; Reviewed

Probab=99.30  E-value=3.7e-11  Score=97.13  Aligned_cols=98  Identities=19%  Similarity=0.170  Sum_probs=72.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      .++.++|+++|..++|||||+.++.+                                   ...++..+.+.||||+.+|
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            57899999999999999999999975                                   1123567889999999887


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL-VFANKQDIEG  137 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~Dl~~  137 (171)
                      ..........+|++++|+|+..... ....+.+..+ ..   .++|.+ ++.||+|+.+
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~  142 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVD  142 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcc
Confidence            6655566789999999999987432 2222223222 22   368876 5899999964

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.30  E-value=5.7e-11  Score=89.86  Aligned_cols=131  Identities=16%  Similarity=0.283  Sum_probs=92.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc-------hhHHHHHhh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS-------LRSYWRNYF   87 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~-------~~~~~~~~~   87 (171)
                      ..++++|+++|..|+||||++|.+..                    ..++.-.+.+||+||-++       ++.....++
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l  115 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL  115 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence            56889999999999999999999994                    233445689999999654       666677778


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC---------CCHHHHHHHHHh--------
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA---------LTPEDIKNVSEK--------  150 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~~~~--------  150 (171)
                      .+.|.++.+.+..++. +.--..++.++....  -+.+++++.|.+|...+         .+...++.+++.        
T Consensus       116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999987753 222233455554332  35899999999998653         233444444422        


Q ss_pred             ----------hhccCCCHHHHHHHHHHH
Q psy11510        151 ----------ATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       151 ----------sa~~~~~v~~~f~~l~~~  168 (171)
                                +...+-|++.+...+++.
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~  220 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALITA  220 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHHh
Confidence                      345567777777776654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.30  E-value=6.7e-12  Score=94.80  Aligned_cols=70  Identities=16%  Similarity=0.008  Sum_probs=37.7

Q ss_pred             EEEEEecCCccchhHHHHHhh--------hCCCEEEEEEeCCChhh-HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         67 KLNIWDVGGQKSLRSYWRNYF--------ESTDGLIWVVDSADKRR-LEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        67 ~~~i~d~~g~~~~~~~~~~~~--------~~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      .+.++|||||-++-..|....        ...-++++++|+....+ -..+...+..+.-.. ..+.|.+.|.||+|+..
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~-~~~lP~vnvlsK~Dl~~  170 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIML-RLELPHVNVLSKIDLLS  170 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHH-HHTSEEEEEE--GGGS-
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHh-hCCCCEEEeeeccCccc
Confidence            789999999988777666544        34678899999764332 122222222221111 13799999999999976

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PRK00007 elongation factor G; Reviewed

Probab=99.28  E-value=4.2e-11  Score=103.00  Aligned_cols=99  Identities=16%  Similarity=0.189  Sum_probs=75.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      ..+..+|+++|..++|||||+++++.                                     +...+..+++.||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            44567999999999999999999963                                     23346688999999998


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      +|.......++.+|++++|+|+.....-+. ...+..+.    ..++|.+++.||+|+.+.
T Consensus        87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~----~~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQAD----KYKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHH----HcCCCEEEEEECCCCCCC
Confidence            887666666788999999999887643332 22222332    247899999999999863

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=6.2e-11  Score=94.01  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=78.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .+++++++++|...+|||||+-+++.                                                  +..+
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            57899999999999999999999998                                                  5556


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---L---EDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      ...+.+.|+||+.+|-...-.-...||+.|+|+|+.+.+.   |   ....+ ..-+....  .-..+||+.||.|+.+ 
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrE-H~~La~tl--Gi~~lIVavNKMD~v~-  159 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTRE-HAFLARTL--GIKQLIVAVNKMDLVS-  159 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhH-HHHHHHhc--CCceEEEEEEcccccc-
Confidence            7789999999999887766666788999999999988631   1   11111 11111111  1346888899999987 


Q ss_pred             CCHHHH
Q psy11510        139 LTPEDI  144 (171)
Q Consensus       139 ~~~~~~  144 (171)
                      .+++..
T Consensus       160 wde~rf  165 (428)
T COG5256         160 WDEERF  165 (428)
T ss_pred             cCHHHH
Confidence            454443

>PRK12740 elongation factor G; Reviewed

Probab=99.26  E-value=5.5e-11  Score=102.03  Aligned_cols=90  Identities=19%  Similarity=0.197  Sum_probs=71.1

Q ss_pred             EeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhHHHHHh
Q psy11510         44 LRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRSYWRNY   86 (171)
Q Consensus        44 iG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~~~~~~   86 (171)
                      +|..++|||||++++..                                     +...+..+++|||||+..+...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            69999999999999954                                     23356789999999999888888888


Q ss_pred             hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      +..+|++++|+|++...+...... +..+.    ..++|+++|+||+|+...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~-~~~~~----~~~~p~iiv~NK~D~~~~  127 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETV-WRQAE----KYGVPRIIFVNKMDRAGA  127 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHH-HHHHH----HcCCCEEEEEECCCCCCC
Confidence            999999999999988765544322 22232    247899999999999763

>KOG0085|consensus

Probab=99.25  E-value=2.3e-12  Score=95.28  Aligned_cols=111  Identities=18%  Similarity=0.337  Sum_probs=87.2

Q ss_pred             cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC----------CChhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510         61 IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS----------ADKRRLEDCARELHELLQEERLAGATLLVFA  130 (171)
Q Consensus        61 ~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~  130 (171)
                      .+...+.+.+.|++||..-+..|-..+.+...++|++.+          ++.+++++....+..++..+...+.++|++.
T Consensus       194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFL  273 (359)
T KOG0085|consen  194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL  273 (359)
T ss_pred             cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEe
Confidence            344567788999999999999999999999888887664          4466788888999999999999999999999


Q ss_pred             eCCCCCC------------------CCCHHHHHHHH------------------HhhhccCCCHHHHHHHHHHHHhC
Q psy11510        131 NKQDIEG------------------ALTPEDIKNVS------------------EKATKVKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       131 nK~Dl~~------------------~~~~~~~~~~~------------------~~sa~~~~~v~~~f~~l~~~i~~  171 (171)
                      ||.|+.+                  ..+.+..++++                  .+.|.+.+||+-+|...-+.|++
T Consensus       274 NKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq  350 (359)
T KOG0085|consen  274 NKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  350 (359)
T ss_pred             chhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence            9999843                  12233344443                  34688889999999988877763

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.22  E-value=2.7e-10  Score=88.46  Aligned_cols=107  Identities=14%  Similarity=0.122  Sum_probs=68.8

Q ss_pred             cccCCC-CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHH---
Q psy11510         29 LRHRPQ-VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWR---   84 (171)
Q Consensus        29 ~~~~~~-~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~---   84 (171)
                      +.+++. ..+.++|+++|.+|+||||+++++++                    ....+..+.++||||.........   
T Consensus        28 l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~  107 (313)
T TIGR00991        28 LGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAV  107 (313)
T ss_pred             HHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHH
Confidence            444444 56789999999999999999999997                    112456899999999765422211   


Q ss_pred             ----Hhh--hCCCEEEEEEeCCC--hhhH-HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         85 ----NYF--ESTDGLIWVVDSAD--KRRL-EDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        85 ----~~~--~~~~~ii~v~d~~~--~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                          .++  ...|+++||.+++.  .... ..+.+.+..++...  --.+.+++.|++|...
T Consensus       108 ~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~  167 (313)
T TIGR00991       108 NIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP  167 (313)
T ss_pred             HHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence                111  25899999965442  2212 22333333433221  1246899999999753

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.22  E-value=1.8e-10  Score=89.47  Aligned_cols=130  Identities=20%  Similarity=0.177  Sum_probs=86.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------cc-cCceEEEEEecCCccchhH----H---HHHhhhCCCE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------IM-TFRFKLNIWDVGGQKSLRS----Y---WRNYFESTDG   92 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------~~-~~~~~~~i~d~~g~~~~~~----~---~~~~~~~~~~   92 (171)
                      -|-+||.+++|||||++.+..                   +. ...-.+.+=|+||.-.-.+    +   .-.++++|.+
T Consensus       161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            456899999999999999998                   12 2334477789998321111    1   2234567999


Q ss_pred             EEEEEeCCChhh---HHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCCCC-CCHHHHHHHHH----------hhhccCCC
Q psy11510         93 LIWVVDSADKRR---LEDCARELHELLQ-EERLAGATLLVFANKQDIEGA-LTPEDIKNVSE----------KATKVKLN  157 (171)
Q Consensus        93 ii~v~d~~~~~s---~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~----------~sa~~~~~  157 (171)
                      +++|+|++..+.   .+..+....++-. .....++|.++|+||+|+... -..++..+.+.          .||.++.|
T Consensus       241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g  320 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREG  320 (369)
T ss_pred             eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccC
Confidence            999999986442   3443333333322 244568999999999997552 22233333332          78999999


Q ss_pred             HHHHHHHHHHHH
Q psy11510        158 KQSKFQVLLNEV  169 (171)
Q Consensus       158 v~~~f~~l~~~i  169 (171)
                      ++++...+.+.+
T Consensus       321 ~~~L~~~~~~~l  332 (369)
T COG0536         321 LDELLRALAELL  332 (369)
T ss_pred             HHHHHHHHHHHH
Confidence            999998887654

>KOG1191|consensus

Probab=99.22  E-value=6.5e-11  Score=95.50  Aligned_cols=135  Identities=19%  Similarity=0.196  Sum_probs=91.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccch--hH-------HHHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSL--RS-------YWRN   85 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~--~~-------~~~~   85 (171)
                      -+..++|+++|.+|||||||+|.+.+                    ++..+.++.+.||+|-..-  ..       -...
T Consensus       265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence            34669999999999999999999998                    6677899999999996541  11       1223


Q ss_pred             hhhCCCEEEEEEeC--CChhhHHHHHHHHHHHHh-----ccccCCCeEEEEEeCCCCCCCCCHHH------H--------
Q psy11510         86 YFESTDGLIWVVDS--ADKRRLEDCARELHELLQ-----EERLAGATLLVFANKQDIEGALTPED------I--------  144 (171)
Q Consensus        86 ~~~~~~~ii~v~d~--~~~~s~~~~~~~~~~i~~-----~~~~~~~p~ivv~nK~Dl~~~~~~~~------~--------  144 (171)
                      -++.+|++++|+|+  +.-++--.+.+.+...-.     ..+....|++++.||.|+....+.-.      .        
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF  424 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence            46689999999999  332222222233333211     12224589999999999966421110      0        


Q ss_pred             HHHHHhhhccCCCHHHHHHHHHHHH
Q psy11510        145 KNVSEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       145 ~~~~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      .-..++|+.++++.+.+.+.+....
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~~~  449 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLNIV  449 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHHHH
Confidence            1111478999999999988776543

>TIGR00101 ureG urease accessory protein UreG

Probab=99.22  E-value=1.8e-10  Score=84.92  Aligned_cols=71  Identities=15%  Similarity=0.117  Sum_probs=46.7

Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHHH----------HhhhccCCC
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT--PEDIKNVS----------EKATKVKLN  157 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~~----------~~sa~~~~~  157 (171)
                      +|.++.|+|+.+..+...  ....++       ...-++++||+|+.+..+  .+.+.+..          ++|+++|+|
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g  183 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEG  183 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence            577899999987655321  111111       223478899999986322  33323222          669999999


Q ss_pred             HHHHHHHHHHHH
Q psy11510        158 KQSKFQVLLNEV  169 (171)
Q Consensus       158 v~~~f~~l~~~i  169 (171)
                      ++++|+++.+..
T Consensus       184 i~el~~~i~~~~  195 (199)
T TIGR00101       184 LDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHHHhhc
Confidence            999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.21  E-value=1.6e-10  Score=101.99  Aligned_cols=62  Identities=24%  Similarity=0.272  Sum_probs=49.8

Q ss_pred             EEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        68 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      +.+|||||++.|..+....+..+|++++|+|+++   +++++.+.     ++..   .++|+++|+||+|+..
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~-----~lk~---~~iPiIVViNKiDL~~  592 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN-----ILRQ---YKTPFVVAANKIDLIP  592 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH-----HHHH---cCCCEEEEEECCCCcc
Confidence            7999999999998888888889999999999987   55555442     2222   3689999999999963

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.21  E-value=7.2e-11  Score=103.40  Aligned_cols=97  Identities=19%  Similarity=0.218  Sum_probs=76.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------ccc----------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMT----------------   63 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~----------------   63 (171)
                      ..+..+|+++|..++|||||+.+++.                                   +..                
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            56678999999999999999999975                                   111                


Q ss_pred             CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      .+..++++||||+.+|.......++.+|+.++|+|+...-.... +..+..+..    .++|+++++||+|+.
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence            25678999999999998877777899999999999987644332 222333332    478999999999997

>PTZ00416 elongation factor 2; Provisional

Probab=99.18  E-value=1e-10  Score=102.30  Aligned_cols=97  Identities=21%  Similarity=0.274  Sum_probs=75.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cc----------cCceEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IM----------TFRFKLN   69 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~----------~~~~~~~   69 (171)
                      ..+..+|+++|..++|||||+.+++.                                   ..          ..+..++
T Consensus        16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            45567999999999999999999985                                   01          1145688


Q ss_pred             EEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        70 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      +.||||+.+|.......++.+|++++|+|+...-.-.. ...+..+.+    .++|++++.||+|+.
T Consensus        96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----cCCCEEEEEEChhhh
Confidence            99999999887777777899999999999988543332 233344432    468999999999997

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.18  E-value=1.9e-10  Score=82.02  Aligned_cols=65  Identities=22%  Similarity=0.217  Sum_probs=44.4

Q ss_pred             ceEEEEEecCCccc----hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510         65 RFKLNIWDVGGQKS----LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus        65 ~~~~~i~d~~g~~~----~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                      ...+.++|+||-..    ...++..++..+|++++|.+++...+-.....+.... ..   .+...++|.||+
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~-~~---~~~~~i~V~nk~  168 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML-DP---DKSRTIFVLNKA  168 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH-TT---TCSSEEEEEE-G
T ss_pred             ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh-cC---CCCeEEEEEcCC
Confidence            34578999999532    3357888889999999999999865544444433333 22   244588889984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.15  E-value=5.1e-10  Score=96.87  Aligned_cols=98  Identities=17%  Similarity=0.221  Sum_probs=74.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------c----ccCceEEEEEecCC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------I----MTFRFKLNIWDVGG   75 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~----~~~~~~~~i~d~~g   75 (171)
                      ..+..+|+++|..++|||||+.+++.                                   .    ...+..+++.||||
T Consensus        17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG   96 (731)
T PRK07560         17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG   96 (731)
T ss_pred             hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence            45667899999999999999999975                                   0    11356789999999


Q ss_pred             ccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         76 QKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        76 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      +.+|.......++.+|++++|+|+.....-+ ....+.....    .+.|.+++.||+|+..
T Consensus        97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~----~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR----ERVKPVLFINKVDRLI  153 (731)
T ss_pred             ccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH----cCCCeEEEEECchhhc
Confidence            9999887778889999999999988753322 2222233222    2567899999999864

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.15  E-value=4.2e-10  Score=90.50  Aligned_cols=104  Identities=18%  Similarity=0.267  Sum_probs=80.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhH
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRS   81 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~   81 (171)
                      +.-+|++|-.-..|||||+..++.                                   +.+.++.+++.||||+.+|--
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG   83 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG   83 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence            456899999999999999999997                                   677889999999999999988


Q ss_pred             HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH
Q psy11510         82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK  145 (171)
Q Consensus        82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  145 (171)
                      .-+..+.=+|++++++|+.+.. +.+.+--+.+-+.    .+.+.|+|.||+|.+++-+.+-+.
T Consensus        84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd  142 (603)
T COG1217          84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVD  142 (603)
T ss_pred             hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHH
Confidence            7777788899999999998843 2222222333333    477888899999999865544333

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=3e-10  Score=90.67  Aligned_cols=103  Identities=20%  Similarity=0.275  Sum_probs=84.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEec
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDV   73 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~   73 (171)
                      ..++-..++|-.+.+|||||-++++.                                         +++.+..+++.||
T Consensus         9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT   88 (528)
T COG4108           9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT   88 (528)
T ss_pred             HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence            34667889999999999999999987                                         7788999999999


Q ss_pred             CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH
Q psy11510         74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE  142 (171)
Q Consensus        74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~  142 (171)
                      ||+++|..-....+..+|+.++|+|+...-.-+.     .++.+-.+.+++|++-++||.|.....+.+
T Consensus        89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR~iPI~TFiNKlDR~~rdP~E  152 (528)
T COG4108          89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLRDIPIFTFINKLDREGRDPLE  152 (528)
T ss_pred             CCccccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhcCCceEEEeeccccccCChHH
Confidence            9999998877777889999999999987432222     234445566899999999999998755543

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.13  E-value=1.1e-09  Score=86.33  Aligned_cols=122  Identities=9%  Similarity=0.086  Sum_probs=82.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      ..+.+.|.+.|++|+|||||+..+..                                                      
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~  132 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG  132 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence            45678999999999999999998766                                                      


Q ss_pred             -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                                 .+..+..+.+.||+|...-...   ....+|.+++|.+...++.+..+.   ..+++      ..-++|
T Consensus       133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiV  200 (332)
T PRK09435        133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIV  200 (332)
T ss_pred             hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEE
Confidence                       2223456678888886522222   355699999997755554444332   22322      234799


Q ss_pred             EeCCCCCCCCC----HHHHHHHH---------------HhhhccCCCHHHHHHHHHHH
Q psy11510        130 ANKQDIEGALT----PEDIKNVS---------------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       130 ~nK~Dl~~~~~----~~~~~~~~---------------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      .||+|+.....    ..++...+               .+||.++.|++++++.+.+.
T Consensus       201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~  258 (332)
T PRK09435        201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDH  258 (332)
T ss_pred             eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            99999875322    12233222               35999999999999998764

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.13  E-value=1e-09  Score=83.44  Aligned_cols=101  Identities=15%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH-------H---HH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS-------Y---WR   84 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~-------~---~~   84 (171)
                      ....++|+++|.+|||||||++.+.+                    ....+..+.+|||||-.....       .   ..
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~  107 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK  107 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence            56789999999999999999999998                    122456789999999654411       0   12


Q ss_pred             Hhhh--CCCEEEEEEeCCChh-hHH--HHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         85 NYFE--STDGLIWVVDSADKR-RLE--DCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        85 ~~~~--~~~~ii~v~d~~~~~-s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      .++.  ..|++++|..++... +..  .+...+.+.+...  --.++++|.||+|...
T Consensus       108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~--i~~~~ivV~T~~d~~~  163 (249)
T cd01853         108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPS--IWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChh--hHhCEEEEEeCCccCC
Confidence            2333  578888887655421 222  2333334433211  1256999999999854

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG1490|consensus

Probab=99.11  E-value=2.6e-10  Score=92.37  Aligned_cols=140  Identities=11%  Similarity=0.091  Sum_probs=97.6

Q ss_pred             cccCCC-CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH----HH-
Q psy11510         29 LRHRPQ-VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS----YW-   83 (171)
Q Consensus        29 ~~~~~~-~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~----~~-   83 (171)
                      ++++++ ..+.-.++++|.++||||||++.+..                   +++.-..+++.||||.-+...    .. 
T Consensus       158 l~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE  237 (620)
T KOG1490|consen  158 LSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE  237 (620)
T ss_pred             HhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH
Confidence            445555 66788999999999999999998887                   455556778889999433211    11 


Q ss_pred             ----HHhhhCCCEEEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHH--HHHHH-----
Q psy11510         84 ----RNYFESTDGLIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPED--IKNVS-----  148 (171)
Q Consensus        84 ----~~~~~~~~~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~--~~~~~-----  148 (171)
                          ....+-..+++|+.|++...  |..+-...++.+  .+...+.|+|+|+||+|+-.  .++++.  +.+.+     
T Consensus       238 mqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsI--KpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~  315 (620)
T KOG1490|consen  238 MQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI--KPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGN  315 (620)
T ss_pred             HHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHh--HHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccC
Confidence                11223357889999999854  566666777777  44467999999999999865  333322  22221     


Q ss_pred             ----HhhhccCCCHHHHHHHHHHHHh
Q psy11510        149 ----EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       149 ----~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                          ++|+.+.+||-++-..++...+
T Consensus       316 v~v~~tS~~~eegVm~Vrt~ACe~LL  341 (620)
T KOG1490|consen  316 VKVVQTSCVQEEGVMDVRTTACEALL  341 (620)
T ss_pred             ceEEEecccchhceeeHHHHHHHHHH
Confidence                5688888999888777776553

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.09  E-value=1.7e-09  Score=80.39  Aligned_cols=100  Identities=13%  Similarity=0.035  Sum_probs=63.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccch----hH----HHH---Hh
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSL----RS----YWR---NY   86 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~----~~----~~~---~~   86 (171)
                      ++|+|+|..|+||||+++.+++                     ....+..+.++||||-...    ..    +..   ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            5899999999999999999998                     2234678999999993221    11    111   12


Q ss_pred             hhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510         87 FESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALT  140 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~  140 (171)
                      ..+.|++++|++..... .-....+++..++.....  .-++||.|.+|......
T Consensus        81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~--k~~ivvfT~~d~~~~~~  133 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIW--KHTIVVFTHADELEDDS  133 (212)
T ss_dssp             TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGG--GGEEEEEEEGGGGTTTT
T ss_pred             cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHH--hHhhHHhhhcccccccc
Confidence            34689999999988422 123344556666554322  34777788887766444

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>cd01882 BMS1 Bms1

Probab=99.08  E-value=1.7e-09  Score=81.13  Aligned_cols=96  Identities=14%  Similarity=0.145  Sum_probs=66.3

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      ...+...|+++|.+|+|||||++.+..                ....+..+.++|+||..  ..+. ...+.+|++++|+
T Consensus        35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i~~~~~~~i~~vDtPg~~--~~~l-~~ak~aDvVllvi  111 (225)
T cd01882          35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDI--NAMI-DIAKVADLVLLLI  111 (225)
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEEEEecCCceEEEEeCCchH--HHHH-HHHHhcCEEEEEE
Confidence            356788999999999999999998887                11244567899999853  2333 3357899999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeE-EEEEeCCCCCC
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATL-LVFANKQDIEG  137 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~Dl~~  137 (171)
                      |++....... .. +...+..   .+.|. ++|.||.|+.+
T Consensus       112 Da~~~~~~~~-~~-i~~~l~~---~g~p~vi~VvnK~D~~~  147 (225)
T cd01882         112 DASFGFEMET-FE-FLNILQV---HGFPRVMGVLTHLDLFK  147 (225)
T ss_pred             ecCcCCCHHH-HH-HHHHHHH---cCCCeEEEEEeccccCC
Confidence            9876543322 12 2222222   35674 55999999864

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.07  E-value=1.3e-10  Score=88.28  Aligned_cols=87  Identities=15%  Similarity=0.121  Sum_probs=68.4

Q ss_pred             cchhHHHHHhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCHHHHHHHH-----
Q psy11510         77 KSLRSYWRNYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGA--LTPEDIKNVS-----  148 (171)
Q Consensus        77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~-----  148 (171)
                      +++..+.+.+++++|++++|+|++++. +++.+.+|+..+..    .++|+++|+||+|+.+.  ...+.+..+.     
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCe
Confidence            577777888999999999999999877 89999999876632    57999999999999652  1222233232     


Q ss_pred             --HhhhccCCCHHHHHHHHHH
Q psy11510        149 --EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       149 --~~sa~~~~~v~~~f~~l~~  167 (171)
                        ++||++|.|++++|+.+.+
T Consensus       100 v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcC
Confidence              5699999999999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.06  E-value=1.2e-09  Score=80.89  Aligned_cols=46  Identities=20%  Similarity=0.172  Sum_probs=34.0

Q ss_pred             CCeEEEEEeCCCCCCCC--CHHHHHHHH----------HhhhccCCCHHHHHHHHHHH
Q psy11510        123 GATLLVFANKQDIEGAL--TPEDIKNVS----------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       123 ~~p~ivv~nK~Dl~~~~--~~~~~~~~~----------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      ..|.++++||+|+.+..  ..++..+.+          .+||++|.|++++|+++.+.
T Consensus       148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999997532  223333332          45999999999999999865

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.04  E-value=3.3e-09  Score=82.90  Aligned_cols=122  Identities=15%  Similarity=0.121  Sum_probs=75.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      ..+...|.++|++|+|||||+..+..                                                      
T Consensus        31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (300)
T TIGR00750        31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGG  110 (300)
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccc
Confidence            45678889999999999999999776                                                      


Q ss_pred             -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                                 .+..++.+.+.||+|.....   ......+|.++++.+...   -+++......+      .++|.++|
T Consensus       111 ~~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~---~~el~~~~~~l------~~~~~ivv  178 (300)
T TIGR00750       111 LSQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGT---GDDLQGIKAGL------MEIADIYV  178 (300)
T ss_pred             hhHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCc---cHHHHHHHHHH------hhhccEEE
Confidence                       01113444555555532111   122445667766643332   23333323333      35788999


Q ss_pred             EeCCCCCCCCCHHH--------HHH-----------HHHhhhccCCCHHHHHHHHHHH
Q psy11510        130 ANKQDIEGALTPED--------IKN-----------VSEKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       130 ~nK~Dl~~~~~~~~--------~~~-----------~~~~sa~~~~~v~~~f~~l~~~  168 (171)
                      .||+|+........        +..           ...+||+++.|++++++.+.+.
T Consensus       179 ~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~  236 (300)
T TIGR00750       179 VNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEH  236 (300)
T ss_pred             EEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence            99999976432211        011           1246999999999999998764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.01  E-value=1.1e-09  Score=87.06  Aligned_cols=93  Identities=15%  Similarity=0.227  Sum_probs=55.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCc-eEEEEEecCCccchhHHHHHh-----h
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFR-FKLNIWDVGGQKSLRSYWRNY-----F   87 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~-~~~~i~d~~g~~~~~~~~~~~-----~   87 (171)
                      ..+++|+|+|.+|+|||||||.+.+                      ...+. -++.+||.||..........|     +
T Consensus        33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            4679999999999999999999987                      12222 248999999965433333444     4


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                      ...|.+|++.+.    +|....-++..-++.   .++|+.+|-+|+|.
T Consensus       113 ~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~  153 (376)
T PF05049_consen  113 YRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDS  153 (376)
T ss_dssp             GG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHH
T ss_pred             cccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccc
Confidence            468988876652    244433334443333   48999999999985

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>KOG3905|consensus

Probab=99.00  E-value=7.4e-09  Score=80.21  Aligned_cols=134  Identities=14%  Similarity=0.147  Sum_probs=92.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhC---C-CE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFES---T-DG   92 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~---~-~~   92 (171)
                      ..-+|+++|..++|||||+.++.+                    -..+...+.+|-..|...+..+....+..   + ..
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetl  130 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETL  130 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceE
Confidence            456899999999999999999998                    11234678899988876665554443332   3 45


Q ss_pred             EEEEEeCCChhh-HHHHHHHHHHHHhc------------------------cc-----c---------------------
Q psy11510         93 LIWVVDSADKRR-LEDCARELHELLQE------------------------ER-----L---------------------  121 (171)
Q Consensus        93 ii~v~d~~~~~s-~~~~~~~~~~i~~~------------------------~~-----~---------------------  121 (171)
                      +|++.|.+++.+ ++.++.|..-+.++                        +.     .                     
T Consensus       131 viltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ll  210 (473)
T KOG3905|consen  131 VILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLL  210 (473)
T ss_pred             EEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccccc
Confidence            688899999955 46666665422210                        00     0                     


Q ss_pred             ----------CCCeEEEEEeCCCCCC----C--CC-------HHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        122 ----------AGATLLVFANKQDIEG----A--LT-------PEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       122 ----------~~~p~ivv~nK~Dl~~----~--~~-------~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                                .++|++||++|||...    .  -.       +..+++++        .+|++...|++-+...|.+.+|
T Consensus       211 PL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~y  290 (473)
T KOG3905|consen  211 PLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSY  290 (473)
T ss_pred             ccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhc
Confidence                      1699999999999832    1  11       12344444        6699999999999999887765

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=5.8e-09  Score=89.12  Aligned_cols=98  Identities=16%  Similarity=0.309  Sum_probs=79.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccC-ceEEEEEecCCc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTF-RFKLNIWDVGGQ   76 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~-~~~~~i~d~~g~   76 (171)
                      ..+..+|.++|+..+||||+..+++.                                     .... +..++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            45778999999999999999999998                                     3344 589999999999


Q ss_pred             cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      -+|...-...++-+|+.+.|+|+...-..+. +    .++++....++|.+++.||.|...
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-E----tv~rqa~~~~vp~i~fiNKmDR~~  142 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-E----TVWRQADKYGVPRILFVNKMDRLG  142 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecH-H----HHHHHHhhcCCCeEEEEECccccc
Confidence            9999888888899999999999988643332 1    222333335899999999999976

>smart00053 DYNc Dynamin, GTPase

Probab=98.96  E-value=1.3e-08  Score=76.90  Aligned_cols=68  Identities=13%  Similarity=0.194  Sum_probs=42.5

Q ss_pred             eEEEEEecCCccc-------------hhHHHHHhhhC-CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEe
Q psy11510         66 FKLNIWDVGGQKS-------------LRSYWRNYFES-TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFAN  131 (171)
Q Consensus        66 ~~~~i~d~~g~~~-------------~~~~~~~~~~~-~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n  131 (171)
                      ..+.+.|+||-..             ...+...|+++ .+.+++|+|+...-+-....+....+    ...+.|+++|+|
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT  200 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT  200 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence            5678999999642             12245567774 45788889876532211211222222    225789999999


Q ss_pred             CCCCCC
Q psy11510        132 KQDIEG  137 (171)
Q Consensus       132 K~Dl~~  137 (171)
                      |+|..+
T Consensus       201 K~D~~~  206 (240)
T smart00053      201 KLDLMD  206 (240)
T ss_pred             CCCCCC
Confidence            999976

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG3886|consensus

Probab=98.95  E-value=3.3e-09  Score=78.48  Aligned_cols=99  Identities=24%  Similarity=0.349  Sum_probs=71.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------c-ccCceEEEEEecCCccchhH-----HHHHhhhCC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------I-MTFRFKLNIWDVGGQKSLRS-----YWRNYFEST   90 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~-~~~~~~~~i~d~~g~~~~~~-----~~~~~~~~~   90 (171)
                      ..-||+++|.+|+|||++-.-+..                    . --+++.+++||.+||+.+..     ....-+++.
T Consensus         3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            456999999999999998766653                    1 12347789999999986543     223457789


Q ss_pred             CEEEEEEeCCChhhHHH---HHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         91 DGLIWVVDSADKRRLED---CARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~---~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      +++++|||++..+-...   .+.-++.+++.  .|...+++..+|.|+..
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~  130 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQ  130 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcc
Confidence            99999999988653333   33334455444  46788899999999976

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=98.94  E-value=1.2e-08  Score=78.93  Aligned_cols=101  Identities=15%  Similarity=0.243  Sum_probs=63.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-------------------------------cccCceEEEEEecCCccc-------h
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-------------------------------IMTFRFKLNIWDVGGQKS-------L   79 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-------------------------------~~~~~~~~~i~d~~g~~~-------~   79 (171)
                      .++|+|+|.+|+|||||++.+.+                               -++..+.+.++||||-..       +
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            58999999999999999999998                               223456789999999221       1


Q ss_pred             hHH-------HHHhh-------------hCCCEEEEEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         80 RSY-------WRNYF-------------ESTDGLIWVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        80 ~~~-------~~~~~-------------~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      ..+       ...++             ..+|+++|.++.+... +..+ .+.++.+.     ..+++|-|+.|+|.   
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~---  154 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADT---  154 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGG---
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccc---
Confidence            110       11111             1479999999976532 2222 23345552     46899999999997   


Q ss_pred             CCHHHHHHH
Q psy11510        139 LTPEDIKNV  147 (171)
Q Consensus       139 ~~~~~~~~~  147 (171)
                      ...+|+..+
T Consensus       155 lt~~el~~~  163 (281)
T PF00735_consen  155 LTPEELQAF  163 (281)
T ss_dssp             S-HHHHHHH
T ss_pred             cCHHHHHHH
Confidence            444554433

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG1144|consensus

Probab=98.93  E-value=7.9e-09  Score=87.17  Aligned_cols=91  Identities=23%  Similarity=0.278  Sum_probs=71.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc----------------------------------ccc--Cce-EEEEEecCCccch
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM----------------------------------IMT--FRF-KLNIWDVGGQKSL   79 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~----------------------------------~~~--~~~-~~~i~d~~g~~~~   79 (171)
                      +.--|+++|...+|||-|+..+.+                                  ...  -.+ -+.++||||++.|
T Consensus       474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF  553 (1064)
T KOG1144|consen  474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF  553 (1064)
T ss_pred             CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence            344588999999999999999987                                  011  111 2578999999999


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                      ..+.......||..|+|+|+-.   +++.+.+     .+++   .++.|+||.+||+|.
T Consensus       554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR---~rktpFivALNKiDR  604 (1064)
T KOG1144|consen  554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLR---MRKTPFIVALNKIDR  604 (1064)
T ss_pred             hhhhhccccccceEEEEeehhccCCcchhHHH-----HHHH---hcCCCeEEeehhhhh
Confidence            9999999999999999999855   5566554     2222   368999999999997

>KOG1707|consensus

Probab=98.93  E-value=1.7e-08  Score=83.13  Aligned_cols=136  Identities=18%  Similarity=0.213  Sum_probs=92.9

Q ss_pred             ccCCCCCceeEEEEEeCCCCcHHHHHHHHhc---------cccCceEEEEEecCCccchhHHHH------Hh----hhCC
Q psy11510         30 RHRPQVSNVAVVSLLRNKNGGETLILKKKKM---------IMTFRFKLNIWDVGGQKSLRSYWR------NY----FEST   90 (171)
Q Consensus        30 ~~~~~~~~~~ki~liG~~~~GKttli~~~~~---------~~~~~~~~~i~d~~g~~~~~~~~~------~~----~~~~   90 (171)
                      ++....++.+++.++|+.++|||.+++.+++         .....+.++..+..|++.+--+.+      .+    -..|
T Consensus       417 ~~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~ke~~c  496 (625)
T KOG1707|consen  417 KKKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTSKEAAC  496 (625)
T ss_pred             ccccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccCcccee
Confidence            3344478899999999999999999999998         222345566666667654432211      01    1469


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-----CCCHHHHHHHH------HhhhccCCCHH
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-----ALTPEDIKNVS------EKATKVKLNKQ  159 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~------~~sa~~~~~v~  159 (171)
                      |+++++||++++.+|+.+.+.+..-...   ...|++.|++|+|+.+     ++.+++.....      ..|.++... .
T Consensus       497 Dv~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~  572 (625)
T KOG1707|consen  497 DVACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-N  572 (625)
T ss_pred             eeEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-c
Confidence            9999999999999999887655544222   6899999999999976     23444444444      224553222 6


Q ss_pred             HHHHHHHHHH
Q psy11510        160 SKFQVLLNEV  169 (171)
Q Consensus       160 ~~f~~l~~~i  169 (171)
                      ++|..|+...
T Consensus       573 ~lf~kL~~~A  582 (625)
T KOG1707|consen  573 ELFIKLATMA  582 (625)
T ss_pred             hHHHHHHHhh
Confidence            7887776543

>KOG0458|consensus

Probab=98.89  E-value=2.3e-08  Score=82.35  Aligned_cols=100  Identities=19%  Similarity=0.196  Sum_probs=76.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      ++..+..+++|...+|||||+-+++.                                                  ++..
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            67899999999999999999999998                                                  5556


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHH------HHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC------ARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~------~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      ...+.+.|.||+.+|.+-.-.-...+|+.++|+|++... |+.-      -+....+++..  .-.-++|++||.|+.+
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVS  329 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccC
Confidence            678899999999998876666677899999999987632 2211      11223333332  2456888999999977

>KOG0468|consensus

Probab=98.88  E-value=7.8e-09  Score=86.35  Aligned_cols=97  Identities=20%  Similarity=0.202  Sum_probs=80.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEec
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDV   73 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~   73 (171)
                      +....++.++|.-..|||+|+.-+..                                         ..++...+++.||
T Consensus       125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            55678999999999999999998887                                         4556678999999


Q ss_pred             CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      ||+-.|.......++-+|++++|+|+.+.-+++.=+. ++..    ...+.|+.+|+||.|..
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~-ikha----iq~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERI-IKHA----IQNRLPIVVVINKVDRL  262 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHH-HHHH----HhccCcEEEEEehhHHH
Confidence            9999998888888999999999999999887765322 3333    23579999999999974

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.87  E-value=1.9e-08  Score=81.32  Aligned_cols=62  Identities=23%  Similarity=0.387  Sum_probs=49.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc------------------c-c------------------------cCceEEEEEecCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM------------------I-M------------------------TFRFKLNIWDVGG   75 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~------------------~-~------------------------~~~~~~~i~d~~g   75 (171)
                      ++|.++|.+|||||||++++.+                  . .                        ....++++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999999999998                  0 0                        1125688999999


Q ss_pred             c----cchhHHHHHh---hhCCCEEEEEEeCC
Q psy11510         76 Q----KSLRSYWRNY---FESTDGLIWVVDSA  100 (171)
Q Consensus        76 ~----~~~~~~~~~~---~~~~~~ii~v~d~~  100 (171)
                      .    .....+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    3444455555   78999999999997

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=1.3e-08  Score=78.73  Aligned_cols=131  Identities=15%  Similarity=0.170  Sum_probs=91.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------c------ccCceE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM------------------------------------------I------MTFRFK   67 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~------------------------------------------~------~~~~~~   67 (171)
                      ++.++|-++|.-..||||+.+.+.+                                          .      ..-.-.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            6789999999999999999999998                                          0      011235


Q ss_pred             EEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHH
Q psy11510         68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA----LTPED  143 (171)
Q Consensus        68 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~  143 (171)
                      +.+.|.||++-.....-+-..--|+.++|+.++.+..=.+..+.+..+ +-  ..-.-++++-||.|+...    -+.++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eI--igik~iiIvQNKIDlV~~E~AlE~y~q  164 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EI--IGIKNIIIVQNKIDLVSRERALENYEQ  164 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hh--hccceEEEEecccceecHHHHHHHHHH
Confidence            789999999866553333233359999999998844333333333333 11  123568899999999651    23445


Q ss_pred             HHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        144 IKNVS-----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       144 ~~~~~-----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +.++.           ..||..+.|++.+++.+.+.|
T Consensus       165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence            55555           339999999999999998765

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.87  E-value=2e-09  Score=81.30  Aligned_cols=121  Identities=12%  Similarity=0.173  Sum_probs=76.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      ..+.+.|-+.|++|+|||||+..+..                                                      
T Consensus        26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG  105 (266)
T PF03308_consen   26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG  105 (266)
T ss_dssp             TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred             cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence            34678999999999999999999987                                                      


Q ss_pred             -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                                 ++.-.+.+.+.+|.|.-.-..   ....-+|.+++|......+..+-++.=+.++         +-++|
T Consensus       106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi---------aDi~v  173 (266)
T PF03308_consen  106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI---------ADIFV  173 (266)
T ss_dssp             HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH----------SEEE
T ss_pred             ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh---------ccEEE
Confidence                       333445555666666332221   1234589999999877766555444323333         55789


Q ss_pred             EeCCCCCCC-CCHHHHHHHH---------------HhhhccCCCHHHHHHHHHH
Q psy11510        130 ANKQDIEGA-LTPEDIKNVS---------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       130 ~nK~Dl~~~-~~~~~~~~~~---------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      .||+|.+.+ ....+++..+               .+||.++.|++++++.+.+
T Consensus       174 VNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~  227 (266)
T PF03308_consen  174 VNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDE  227 (266)
T ss_dssp             EE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            999997652 1223333333               4589999999999988864

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.80  E-value=1.3e-08  Score=78.52  Aligned_cols=46  Identities=17%  Similarity=0.076  Sum_probs=33.6

Q ss_pred             CCeEEEEEeCCCCCCCC--CHHHHHHHH----------HhhhccCCCHHHHHHHHHHH
Q psy11510        123 GATLLVFANKQDIEGAL--TPEDIKNVS----------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       123 ~~p~ivv~nK~Dl~~~~--~~~~~~~~~----------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      ..+-++|+||+|+....  +.+++.+.+          ..|+++|+|++++.+++...
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            46778999999997532  233333333          44999999999999999764

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.79  E-value=1.7e-08  Score=73.00  Aligned_cols=69  Identities=12%  Similarity=0.057  Sum_probs=44.6

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCCCCC--CHHHHHHHH----------HhhhccCCC
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQ-EERLAGATLLVFANKQDIEGAL--TPEDIKNVS----------EKATKVKLN  157 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~----------~~sa~~~~~  157 (171)
                      +.-|+|+|++..+--         -++ .+.... .-++|+||.|+...+  +.+...+..          .++.++|.|
T Consensus       119 ~~~v~VidvteGe~~---------P~K~gP~i~~-aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G  188 (202)
T COG0378         119 HLRVVVIDVTEGEDI---------PRKGGPGIFK-ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEG  188 (202)
T ss_pred             ceEEEEEECCCCCCC---------cccCCCceeE-eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcC
Confidence            366777777765311         001 222223 678899999998743  334443333          569999999


Q ss_pred             HHHHHHHHHHHH
Q psy11510        158 KQSKFQVLLNEV  169 (171)
Q Consensus       158 v~~~f~~l~~~i  169 (171)
                      .+++++++....
T Consensus       189 ~~~~~~~i~~~~  200 (202)
T COG0378         189 LDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHHhhc
Confidence            999999987654

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=98.79  E-value=5e-08  Score=76.35  Aligned_cols=97  Identities=20%  Similarity=0.170  Sum_probs=71.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------cc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------------------------------------IM   62 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------------------------------------~~   62 (171)
                      .+..++++-+|.-.-|||||+=|++.                                                    +.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            35679999999999999999999998                                                    33


Q ss_pred             cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHH--HHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAR--ELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        63 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~--~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      -++-++.+-||||++.|....-.-..-||+.|+++|+...- +++.++  ++..++.     =.-+++..||+||.+
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLG-----IrhvvvAVNKmDLvd  153 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLG-----IRHVVVAVNKMDLVD  153 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhC-----CcEEEEEEeeecccc
Confidence            45667889999999988665555566799999999985531 222221  2333332     245778889999987

>KOG0410|consensus

Probab=98.78  E-value=2.9e-08  Score=76.91  Aligned_cols=131  Identities=14%  Similarity=0.113  Sum_probs=84.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCc---------cchhHHHHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQ---------KSLRSYWRN   85 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~---------~~~~~~~~~   85 (171)
                      ....--|.++|..|+|||||++++..                    .-..+-.+-+.||.|=         ..|+...+.
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee  254 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE  254 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence            34456799999999999999999998                    1123345677799981         112221111


Q ss_pred             hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe----EEEEEeCCCCCCCCCHHHHHHHHHhhhccCCCHHHH
Q psy11510         86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT----LLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSK  161 (171)
Q Consensus        86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p----~ivv~nK~Dl~~~~~~~~~~~~~~~sa~~~~~v~~~  161 (171)
                       ...+|.++-|.|++.|+.-..... ....+++...+..|    ++=|=||.|......++|-....-.|+++|+|.++.
T Consensus       255 -VaeadlllHvvDiShP~ae~q~e~-Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~n~~v~isaltgdgl~el  332 (410)
T KOG0410|consen  255 -VAEADLLLHVVDISHPNAEEQRET-VLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEKNLDVGISALTGDGLEEL  332 (410)
T ss_pred             -HhhcceEEEEeecCCccHHHHHHH-HHHHHHhcCCCcHHHHhHHHhhccccccccccCccccCCccccccccCccHHHH
Confidence             347999999999999876554433 33344444444444    334558888766444433333456699999999998


Q ss_pred             HHHHHH
Q psy11510        162 FQVLLN  167 (171)
Q Consensus       162 f~~l~~  167 (171)
                      ...+-.
T Consensus       333 ~~a~~~  338 (410)
T KOG0410|consen  333 LKAEET  338 (410)
T ss_pred             HHHHHH
Confidence            776543

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.76  E-value=1e-07  Score=78.45  Aligned_cols=78  Identities=18%  Similarity=0.265  Sum_probs=56.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------cc-cCceEEEEEecCCccchhHHHHHhhhC----CC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFES----TD   91 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~----~~   91 (171)
                      ...-.|+|+|..++|||||+.+|.+                   -+ .+...+++|-..|...+..+.+..+..    --
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t  102 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT  102 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence            3567899999999999999999987                   11 123578999999876676665554442    35


Q ss_pred             EEEEEEeCCChhhH-HHHHHHHH
Q psy11510         92 GLIWVVDSADKRRL-EDCARELH  113 (171)
Q Consensus        92 ~ii~v~d~~~~~s~-~~~~~~~~  113 (171)
                      .+++|+|.+.|..+ +.+..|+.
T Consensus       103 ~vvIvlDlS~PW~~~esL~~W~~  125 (472)
T PF05783_consen  103 LVVIVLDLSKPWNIMESLEKWLS  125 (472)
T ss_pred             EEEEEecCCChHHHHHHHHHHHH
Confidence            67888999998765 44555443

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.73  E-value=1e-07  Score=73.29  Aligned_cols=121  Identities=11%  Similarity=0.153  Sum_probs=78.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      ..+...|-+.|.+|+|||||+..|..                                                      
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGG  127 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGG  127 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchh
Confidence            55778999999999999999999987                                                      


Q ss_pred             -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                                 ++...+-+.|.+|.|.-.-..-   ...-+|.+++|.=..-.+..+-++.   .++      .+.-++|
T Consensus       128 lS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---I~~~aDt~~~v~~pg~GD~~Q~iK~---Gim------EiaDi~v  195 (323)
T COG1703         128 LSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---IANMADTFLVVMIPGAGDDLQGIKA---GIM------EIADIIV  195 (323)
T ss_pred             hhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---HhhhcceEEEEecCCCCcHHHHHHh---hhh------hhhheee
Confidence                       3333444455555553322211   1234788888776666655555443   332      2355689


Q ss_pred             EeCCCCCCC-CCHHHHHHHH-----------------HhhhccCCCHHHHHHHHHH
Q psy11510        130 ANKQDIEGA-LTPEDIKNVS-----------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       130 ~nK~Dl~~~-~~~~~~~~~~-----------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      .||.|..++ ....++...+                 .++|.+|+|++++++.+.+
T Consensus       196 INKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~  251 (323)
T COG1703         196 INKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIED  251 (323)
T ss_pred             EeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHH
Confidence            999997663 1222222222                 5699999999999988754

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=98.68  E-value=5.4e-07  Score=72.53  Aligned_cols=96  Identities=16%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------cccCceEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------------------------------------IMTFRFKLN   69 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------------------------------------~~~~~~~~~   69 (171)
                      .-.+.|.++|+.++|||||+++|.+                                              .++...++.
T Consensus        15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr   94 (492)
T TIGR02836        15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR   94 (492)
T ss_pred             CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence            3578999999999999999999998                                              223346788


Q ss_pred             EEecCCccc--------hhH------H---------------HHHhhh-CCCEEEEEE-eCC--C--hhhHHHH-HHHHH
Q psy11510         70 IWDVGGQKS--------LRS------Y---------------WRNYFE-STDGLIWVV-DSA--D--KRRLEDC-ARELH  113 (171)
Q Consensus        70 i~d~~g~~~--------~~~------~---------------~~~~~~-~~~~ii~v~-d~~--~--~~s~~~~-~~~~~  113 (171)
                      +.|++|-..        ...      .               ....+. +++.-++|. |.+  +  ++.+.+. .+++.
T Consensus        95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~  174 (492)
T TIGR02836        95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE  174 (492)
T ss_pred             EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence            999999211        000      0               234455 788888888 653  1  1122222 23344


Q ss_pred             HHHhccccCCCeEEEEEeCCCC
Q psy11510        114 ELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus       114 ~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                      .+.    ..++|++++.||+|-
T Consensus       175 eLk----~~~kPfiivlN~~dp  192 (492)
T TIGR02836       175 ELK----ELNKPFIILLNSTHP  192 (492)
T ss_pred             HHH----hcCCCEEEEEECcCC
Confidence            442    258999999999994

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.66  E-value=2.3e-07  Score=78.40  Aligned_cols=99  Identities=13%  Similarity=0.096  Sum_probs=63.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchh-------HH---HHHh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLR-------SY---WRNY   86 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~-------~~---~~~~   86 (171)
                      ..++|+++|.+|+||||++|.+++                    ....+..+.++||||-....       .+   ...+
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~  196 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF  196 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence            457999999999999999999998                    11234678999999965421       11   1123


Q ss_pred             hh--CCCEEEEEEeCCChhhH-H--HHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         87 FE--STDGLIWVVDSADKRRL-E--DCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        87 ~~--~~~~ii~v~d~~~~~s~-~--~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      +.  .+|++++|..++..... +  .+.+.+..+.....  -.-+|||.|+.|...
T Consensus       197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lp  250 (763)
T TIGR00993       197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAP  250 (763)
T ss_pred             HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCC
Confidence            33  48999999877543221 2  22233444433211  144677789888765

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>KOG1954|consensus

Probab=98.65  E-value=2.6e-07  Score=72.93  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=72.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------------
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------------------------------------------------   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------------------------------------------------   60 (171)
                      -=|+++|+-+.|||||++.++.                                                          
T Consensus        59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~c  138 (532)
T KOG1954|consen   59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFMC  138 (532)
T ss_pred             ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHHH
Confidence            3589999999999999999998                                                          


Q ss_pred             --ccc-CceEEEEEecCCcc-----------chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeE
Q psy11510         61 --IMT-FRFKLNIWDVGGQK-----------SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL  126 (171)
Q Consensus        61 --~~~-~~~~~~i~d~~g~~-----------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~  126 (171)
                        +.+ ---.+++.||||.-           .|....+=|...||.|+++||++.-+--++..+.+..+..+    .=.+
T Consensus       139 sqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Edki  214 (532)
T KOG1954|consen  139 SQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----EDKI  214 (532)
T ss_pred             hcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----ccee
Confidence              111 12357899999932           24445666778999999999988755444444445555433    3456


Q ss_pred             EEEEeCCCCCCCCCHHHHHHHH
Q psy11510        127 LVFANKQDIEGALTPEDIKNVS  148 (171)
Q Consensus       127 ivv~nK~Dl~~~~~~~~~~~~~  148 (171)
                      -||.||+|..   .++++.+..
T Consensus       215 RVVLNKADqV---dtqqLmRVy  233 (532)
T KOG1954|consen  215 RVVLNKADQV---DTQQLMRVY  233 (532)
T ss_pred             EEEecccccc---CHHHHHHHH
Confidence            6789999974   445555443

>KOG0705|consensus

Probab=98.65  E-value=4.6e-08  Score=80.29  Aligned_cols=131  Identities=15%  Similarity=0.250  Sum_probs=100.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      .-+.+|+-++|..++|||+++.+++.                   .+.....+.+.|.+|.     ....|...+|++||
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~-----~~aQft~wvdavIf  101 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGH-----PDAQFCQWVDAVVF  101 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCC-----chhhhhhhccceEE
Confidence            45789999999999999999999987                   3344455566676662     23456778999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC----CCCCCCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQ----DIEGALTPEDIKNVS---------EKATKVKLNKQSKF  162 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~----Dl~~~~~~~~~~~~~---------~~sa~~~~~v~~~f  162 (171)
                      ||...+.++|+.+......+........+|.++++++-    |.+......+.+..+         ++++.+|.|+..+|
T Consensus       102 vf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~rvf  181 (749)
T KOG0705|consen  102 VFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVERVF  181 (749)
T ss_pred             EEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHHHH
Confidence            99999999999998887777665555679999998873    334444444444443         67999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.+.
T Consensus       182 ~~~~~k~i  189 (749)
T KOG0705|consen  182 QEVAQKIV  189 (749)
T ss_pred             HHHHHHHH
Confidence            99988764

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=6.8e-07  Score=71.84  Aligned_cols=123  Identities=15%  Similarity=0.085  Sum_probs=88.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      -|...|.-.-|||||++.+.+                      .+.++..+.+.|+||++++-...-.-....|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            467788999999999999998                      3445568899999999988665555567899999999


Q ss_pred             eCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH------------HhhhccCCCHHHHH
Q psy11510         98 DSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS------------EKATKVKLNKQSKF  162 (171)
Q Consensus        98 d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------------~~sa~~~~~v~~~f  162 (171)
                      |.++   +++.+.+.  ..+++     .-.-.++|+||+|..+....++..+.+            .+|+++|.||+++-
T Consensus        82 ~~deGl~~qtgEhL~--iLdll-----gi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk  154 (447)
T COG3276          82 AADEGLMAQTGEHLL--ILDLL-----GIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELK  154 (447)
T ss_pred             eCccCcchhhHHHHH--HHHhc-----CCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHH
Confidence            9965   44444332  11221     234468999999998743322222221            45899999999999


Q ss_pred             HHHHHHH
Q psy11510        163 QVLLNEV  169 (171)
Q Consensus       163 ~~l~~~i  169 (171)
                      +.+.+..
T Consensus       155 ~~l~~L~  161 (447)
T COG3276         155 NELIDLL  161 (447)
T ss_pred             HHHHHhh
Confidence            8887653

>KOG0461|consensus

Probab=98.61  E-value=5.6e-07  Score=70.53  Aligned_cols=130  Identities=18%  Similarity=0.139  Sum_probs=81.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      .+-.+++-++|.-.+|||||.+++..                                   .......+.+.|.||+...
T Consensus         4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL   83 (522)
T KOG0461|consen    4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL   83 (522)
T ss_pred             CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence            44569999999999999999999987                                   4556788999999998655


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHH-HHHHHHhccccCCCeEEEEEeCCCCCCC-CCHHHHHHH-------H--
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCAR-ELHELLQEERLAGATLLVFANKQDIEGA-LTPEDIKNV-------S--  148 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~-------~--  148 (171)
                      -...-.-..-.|..++|+|+...-.=+..+. .+.+++      ....++|.||.|.-.+ .....+.+.       +  
T Consensus        84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~  157 (522)
T KOG0461|consen   84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLES  157 (522)
T ss_pred             HHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh------ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHh
Confidence            4433344455788899999876422222211 122222      2345666777765432 111112222       1  


Q ss_pred             ----------HhhhccC----CCHHHHHHHHHHHHh
Q psy11510        149 ----------EKATKVK----LNKQSKFQVLLNEVS  170 (171)
Q Consensus       149 ----------~~sa~~~----~~v~~~f~~l~~~i~  170 (171)
                                +.||+.|    +.+.++.+.+-.+|+
T Consensus       158 t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if  193 (522)
T KOG0461|consen  158 TGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF  193 (522)
T ss_pred             cCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence                      3478888    666666666655553

>cd01855 YqeH YqeH

Probab=98.60  E-value=1.6e-07  Score=68.49  Aligned_cols=84  Identities=14%  Similarity=0.010  Sum_probs=58.8

Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHH---------
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNV---------  147 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~---------  147 (171)
                      .++.++..+++++|++++|+|++++..-     |...+...  ..++|+++|+||+|+.. ....+.+..+         
T Consensus        23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~   95 (190)
T cd01855          23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGL   95 (190)
T ss_pred             HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhc
Confidence            3577888999999999999999875421     11222111  24689999999999964 3333322222         


Q ss_pred             -------HHhhhccCCCHHHHHHHHHHH
Q psy11510        148 -------SEKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       148 -------~~~sa~~~~~v~~~f~~l~~~  168 (171)
                             ...||++|.|++++++.+.+.
T Consensus        96 ~~~~~~i~~vSA~~~~gi~eL~~~l~~~  123 (190)
T cd01855          96 GLKPKDVILISAKKGWGVEELINAIKKL  123 (190)
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHHH
Confidence                   135999999999999998764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PTZ00258 GTP-binding protein; Provisional

Probab=98.58  E-value=4.4e-07  Score=73.02  Aligned_cols=66  Identities=17%  Similarity=0.148  Sum_probs=47.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccC-----------------ceEEEEEecCCccc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTF-----------------RFKLNIWDVGGQKS   78 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~-----------------~~~~~i~d~~g~~~   78 (171)
                      ....++|.++|.+|||||||++.+.+                   +..+                 ..++.+.|+||-..
T Consensus        18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~   97 (390)
T PTZ00258         18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK   97 (390)
T ss_pred             CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence            35678999999999999999999987                   0001                 23489999999432


Q ss_pred             h----hHHHH---HhhhCCCEEEEEEeCC
Q psy11510         79 L----RSYWR---NYFESTDGLIWVVDSA  100 (171)
Q Consensus        79 ~----~~~~~---~~~~~~~~ii~v~d~~  100 (171)
                      -    ..+..   ..++++|++++|+|..
T Consensus        98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1    11222   3357899999999974

>KOG3887|consensus

Probab=98.56  E-value=6.4e-07  Score=67.06  Aligned_cols=96  Identities=23%  Similarity=0.290  Sum_probs=69.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH---HHHHhhhCCCEEEEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS---YWRNYFESTDGLIWV   96 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~---~~~~~~~~~~~ii~v   96 (171)
                      +|+++|...+||||+-+-...                    +...-+.+++||.|||-.+-.   -....++.+.+++||
T Consensus        29 ~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifv  108 (347)
T KOG3887|consen   29 RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFV  108 (347)
T ss_pred             eEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEEE
Confidence            499999999999999877665                    333567899999999866533   346678999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHh-ccccCCCeEEEEEeCCCCC
Q psy11510         97 VDSADKRRLEDCARELHELLQ-EERLAGATLLVFANKQDIE  136 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~-~~~~~~~p~ivv~nK~Dl~  136 (171)
                      +|+.+. ..+.+.+....+-+ ....+++.+=+++.|.|-.
T Consensus       109 IDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGL  148 (347)
T KOG3887|consen  109 IDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGL  148 (347)
T ss_pred             EechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCC
Confidence            997653 33444333222221 2334788899999999964

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=9.3e-07  Score=67.93  Aligned_cols=95  Identities=21%  Similarity=0.209  Sum_probs=69.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      .+++++|..+|.-+-|||||...+..                                   ..-.+..+...|.||+.+|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            67899999999999999999998876                                   2334456678899999888


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      -...-.-.-..|+.|+|+.+++   |++-+.+.     +.++   -++| ++++.||+|+.+
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL-----larq---vGvp~ivvflnK~Dmvd  142 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTREHIL-----LARQ---VGVPYIVVFLNKVDMVD  142 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh-----hhhh---cCCcEEEEEEecccccC
Confidence            5533333456899999999988   44444431     1111   2665 666789999976

>cd01859 MJ1464 MJ1464

Probab=98.45  E-value=3.7e-07  Score=64.41  Aligned_cols=84  Identities=19%  Similarity=0.217  Sum_probs=54.9

Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhh
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKA  151 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~s  151 (171)
                      +.+++...+++|++++|+|++++...... . +...+.   ..++|+++|+||+|+.+....+.....        ...|
T Consensus         3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~-l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS   77 (156)
T cd01859           3 KRLVRRIIKESDVVLEVLDARDPELTRSR-K-LERYVL---ELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVS   77 (156)
T ss_pred             HHHHHHHHhhCCEEEEEeeCCCCcccCCH-H-HHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEE
Confidence            34566677889999999999876433221 1 222222   246899999999998542111111111        1348


Q ss_pred             hccCCCHHHHHHHHHHH
Q psy11510        152 TKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       152 a~~~~~v~~~f~~l~~~  168 (171)
                      |+++.|++++++.+.+.
T Consensus        78 a~~~~gi~~L~~~l~~~   94 (156)
T cd01859          78 AKERLGTKILRRTIKEL   94 (156)
T ss_pred             ccccccHHHHHHHHHHH
Confidence            99999999999988764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0447|consensus

Probab=98.44  E-value=3.3e-06  Score=69.87  Aligned_cols=110  Identities=14%  Similarity=0.286  Sum_probs=80.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------------------------------   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------------------------------   60 (171)
                      -..-+|+++|+.++||||.+..+..                                                       
T Consensus       306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~  385 (980)
T KOG0447|consen  306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL  385 (980)
T ss_pred             ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence            3557899999999999999998876                                                       


Q ss_pred             --------------------cccCc-eEEEEEecCC-------------ccchhHHHHHhhhCCCEEEEEEeCCChhhHH
Q psy11510         61 --------------------IMTFR-FKLNIWDVGG-------------QKSLRSYWRNYFESTDGLIWVVDSADKRRLE  106 (171)
Q Consensus        61 --------------------~~~~~-~~~~i~d~~g-------------~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~  106 (171)
                                          +.+++ -.+.+.|.||             .+....+...|..++++||+|+--.+.+.-.
T Consensus       386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER  465 (980)
T KOG0447|consen  386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER  465 (980)
T ss_pred             HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh
Confidence                                33443 3577889999             2344557788899999999998644433333


Q ss_pred             HHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH
Q psy11510        107 DCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS  148 (171)
Q Consensus       107 ~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~  148 (171)
                      ..   .-++..+....+...|+|.+|.|+.+  -.+++.+++.+
T Consensus       466 Sn---VTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIl  506 (980)
T KOG0447|consen  466 SI---VTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQII  506 (980)
T ss_pred             hh---HHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHH
Confidence            33   23444455567899999999999987  35677777766

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.43  E-value=3.2e-06  Score=66.65  Aligned_cols=95  Identities=13%  Similarity=0.196  Sum_probs=63.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------cccCceEEEEEecCCccc------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------IMTFRFKLNIWDVGGQKS------   78 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------~~~~~~~~~i~d~~g~~~------   78 (171)
                      .-.+.|+++|+.|.|||||++.+.+                               -++..+.+++.||||=.+      
T Consensus        21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~  100 (373)
T COG5019          21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK  100 (373)
T ss_pred             CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence            4679999999999999999999998                               233457789999999221      


Q ss_pred             -hhH-------HHHHhhh--------------CCCEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510         79 -LRS-------YWRNYFE--------------STDGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus        79 -~~~-------~~~~~~~--------------~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                       +.+       ....|+.              .+|+++|.+..+.- .+..+. +.++.+.     ..+-+|-|+-|+|.
T Consensus       101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~  174 (373)
T COG5019         101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS-----KRVNLIPVIAKADT  174 (373)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh-----cccCeeeeeecccc
Confidence             111       1222221              47999998886542 233332 3345552     34677888889997


Q ss_pred             C
Q psy11510        136 E  136 (171)
Q Consensus       136 ~  136 (171)
                      .
T Consensus       175 l  175 (373)
T COG5019         175 L  175 (373)
T ss_pred             C
Confidence            4

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.43  E-value=2e-06  Score=68.61  Aligned_cols=62  Identities=11%  Similarity=0.129  Sum_probs=45.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccC---------------ceEEEEEecCCccch---
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTF---------------RFKLNIWDVGGQKSL---   79 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~---------------~~~~~i~d~~g~~~~---   79 (171)
                      ++|.++|.+|||||||++.+.+                     +...               ...+.+.|+||-..-   
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            6899999999999999999998                     0000               124899999994321   


Q ss_pred             -hHHHHH---hhhCCCEEEEEEeCC
Q psy11510         80 -RSYWRN---YFESTDGLIWVVDSA  100 (171)
Q Consensus        80 -~~~~~~---~~~~~~~ii~v~d~~  100 (171)
                       ..+...   .++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence             122222   356899999999984

>cd01900 YchF YchF subfamily

Probab=98.40  E-value=8.1e-07  Score=68.48  Aligned_cols=60  Identities=12%  Similarity=0.141  Sum_probs=42.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc-------------------cccC-----------------ceEEEEEecCCccch----h
Q psy11510         41 VSLLRNKNGGETLILKKKKM-------------------IMTF-----------------RFKLNIWDVGGQKSL----R   80 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~-------------------~~~~-----------------~~~~~i~d~~g~~~~----~   80 (171)
                      |.++|.++||||||++.+.+                   ....                 ...+.+.|+||--.-    .
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            57899999999999999998                   0001                 124899999994321    1


Q ss_pred             HHHHH---hhhCCCEEEEEEeCC
Q psy11510         81 SYWRN---YFESTDGLIWVVDSA  100 (171)
Q Consensus        81 ~~~~~---~~~~~~~ii~v~d~~  100 (171)
                      .+...   .++++|++++|+|..
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            22222   356799999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.36  E-value=9e-07  Score=70.55  Aligned_cols=81  Identities=15%  Similarity=0.121  Sum_probs=57.0

Q ss_pred             HHHhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------Hhhhc
Q psy11510         83 WRNYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATK  153 (171)
Q Consensus        83 ~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~  153 (171)
                      ....+.++|.+++|+|+.++. ....+.+|+....    ..++|+++|+||+|+.+....+...+.+        .+||+
T Consensus        83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~  158 (352)
T PRK12289         83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVE  158 (352)
T ss_pred             echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcC
Confidence            344578999999999998765 4445666666552    2579999999999996421112222222        34999


Q ss_pred             cCCCHHHHHHHHHH
Q psy11510        154 VKLNKQSKFQVLLN  167 (171)
Q Consensus       154 ~~~~v~~~f~~l~~  167 (171)
                      ++.|++++++.+..
T Consensus       159 tg~GI~eL~~~L~~  172 (352)
T PRK12289        159 TGIGLEALLEQLRN  172 (352)
T ss_pred             CCCCHHHHhhhhcc
Confidence            99999999988764

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.35  E-value=4.4e-06  Score=59.34  Aligned_cols=20  Identities=20%  Similarity=0.149  Sum_probs=18.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      ++++|..|+||||+++++..
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~   22 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILT   22 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHh
Confidence            67999999999999998875

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG2655|consensus

Probab=98.33  E-value=6.7e-06  Score=65.17  Aligned_cols=95  Identities=13%  Similarity=0.210  Sum_probs=62.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc----------------------------c--ccCceEEEEEecCCcc-------ch
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM----------------------------I--MTFRFKLNIWDVGGQK-------SL   79 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~----------------------------~--~~~~~~~~i~d~~g~~-------~~   79 (171)
                      -.+.+.++|++|.|||||++.+..                            +  ++-.+.+++.||||-.       .+
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            459999999999999999999887                            2  3345778899999922       11


Q ss_pred             hH-------HHHHhhh-------------CCCEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         80 RS-------YWRNYFE-------------STDGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        80 ~~-------~~~~~~~-------------~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      ++       ....|+.             .+|+++|.+..+.. .+..+. +.++.+.     ..+.+|-|+-|+|...
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS-----KKVNLIPVIAKADTLT  172 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh-----ccccccceeeccccCC
Confidence            11       2223321             57999998886543 222222 3344442     3577888888999743

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.33  E-value=7.6e-06  Score=57.75  Aligned_cols=126  Identities=17%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecC-Ccc-------------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVG-GQK-------------------   77 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~-g~~-------------------   77 (171)
                      +..+||.+.|++||||||++.++..                  -.+..+-+.+.|+. |.+                   
T Consensus         3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~   82 (179)
T COG1618           3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN   82 (179)
T ss_pred             CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence            4578999999999999999999997                  23445667777776 311                   


Q ss_pred             --chh----HHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHhh
Q psy11510         78 --SLR----SYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKA  151 (171)
Q Consensus        78 --~~~----~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~s  151 (171)
                        .+.    ...+..++.+|.+|.  |--.+  ++.....+.+.+++....+.|++.+..+.+...  -.++++..-..-
T Consensus        83 v~~le~i~~~al~rA~~~aDvIII--DEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr~P--~v~~ik~~~~v~  156 (179)
T COG1618          83 VEGLEEIAIPALRRALEEADVIII--DEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSRHP--LVQRIKKLGGVY  156 (179)
T ss_pred             HHHHHHHhHHHHHHHhhcCCEEEE--ecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccCCh--HHHHhhhcCCEE
Confidence              111    111222345677665  54333  333223333333443446889998888776522  111222222222


Q ss_pred             h-ccCCCHHHHHHHHHH
Q psy11510        152 T-KVKLNKQSKFQVLLN  167 (171)
Q Consensus       152 a-~~~~~v~~~f~~l~~  167 (171)
                      . .+.+|-+.++..+..
T Consensus       157 v~lt~~NR~~i~~~Il~  173 (179)
T COG1618         157 VFLTPENRNRILNEILS  173 (179)
T ss_pred             EEEccchhhHHHHHHHH
Confidence            2 455555566655544

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.31  E-value=1.7e-06  Score=69.32  Aligned_cols=85  Identities=18%  Similarity=0.181  Sum_probs=60.9

Q ss_pred             ccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH------
Q psy11510         76 QKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS------  148 (171)
Q Consensus        76 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~------  148 (171)
                      .++|..+...+.+.++++++|+|+.+..     ..|...+.+.  ..+.|+++|+||+|+.. ....+++.++.      
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~--~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRF--VGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHH--hCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHH
Confidence            5678888888889999999999987643     1122333222  13679999999999965 34444444332      


Q ss_pred             ---------HhhhccCCCHHHHHHHHHH
Q psy11510        149 ---------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       149 ---------~~sa~~~~~v~~~f~~l~~  167 (171)
                               .+||++|.|++++|+.+.+
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~  150 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIKK  150 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence                     3599999999999998865

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.31  E-value=1.4e-06  Score=67.65  Aligned_cols=79  Identities=16%  Similarity=0.016  Sum_probs=58.3

Q ss_pred             HhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccC
Q psy11510         85 NYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVK  155 (171)
Q Consensus        85 ~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~  155 (171)
                      ..+.++|.+++|+|+.++. ++..+.+|+..+..    .++|+++|+||+|+.+...........        ..||+++
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g  149 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTG  149 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            3477899999999999987 78888888776633    478999999999996542111111111        4599999


Q ss_pred             CCHHHHHHHHHH
Q psy11510        156 LNKQSKFQVLLN  167 (171)
Q Consensus       156 ~~v~~~f~~l~~  167 (171)
                      .|+++++..+..
T Consensus       150 ~gi~~L~~~L~~  161 (287)
T cd01854         150 EGLDELREYLKG  161 (287)
T ss_pred             ccHHHHHhhhcc
Confidence            999999887653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.29  E-value=1e-05  Score=59.45  Aligned_cols=93  Identities=18%  Similarity=0.236  Sum_probs=58.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------ccc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------------------------------------------IMT   63 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------------------------------------------~~~   63 (171)
                      ..|+++|+.||||||.+-++..                                                       ...
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~   81 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK   81 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence            4689999999999999988876                                                       111


Q ss_pred             CceEEEEEecCCccchhH----HHHHhhh--CCCEEEEEEeCCChhh-HHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         64 FRFKLNIWDVGGQKSLRS----YWRNYFE--STDGLIWVVDSADKRR-LEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~----~~~~~~~--~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      ++..+.++||+|......    ....+.+  ..+-+++|.+++.... ++.+...+..+       +.. -++.+|.|..
T Consensus        82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-------~~~-~lIlTKlDet  153 (196)
T PF00448_consen   82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-------GID-GLILTKLDET  153 (196)
T ss_dssp             TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-------STC-EEEEESTTSS
T ss_pred             cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-------cCc-eEEEEeecCC
Confidence            335688999999654432    1222222  6789999999887543 33332222211       222 3558999986


Q ss_pred             CCC
Q psy11510        137 GAL  139 (171)
Q Consensus       137 ~~~  139 (171)
                      ...
T Consensus       154 ~~~  156 (196)
T PF00448_consen  154 ARL  156 (196)
T ss_dssp             STT
T ss_pred             CCc
Confidence            643

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.26  E-value=8.8e-06  Score=74.12  Aligned_cols=96  Identities=17%  Similarity=0.233  Sum_probs=63.6

Q ss_pred             EEEEeCCCCcHHHHHHHHhc---c------------ccC-c------eEEEEEecCCcc--------chhHHHHHhhh--
Q psy11510         41 VSLLRNKNGGETLILKKKKM---I------------MTF-R------FKLNIWDVGGQK--------SLRSYWRNYFE--   88 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~---~------------~~~-~------~~~~i~d~~g~~--------~~~~~~~~~~~--   88 (171)
                      .++||++|+||||++.+.-.   .            ... +      -.-.++||+|.-        .....|..++.  
T Consensus       114 YlviG~~gsGKtt~l~~sgl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L  193 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLL  193 (1169)
T ss_pred             EEEECCCCCchhHHHHhCCCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHHHH
Confidence            68999999999999998733   0            000 0      134578999922        23446777653  


Q ss_pred             -------CCCEEEEEEeCCCh-----hhH----HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         89 -------STDGLIWVVDSADK-----RRL----EDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        89 -------~~~~ii~v~d~~~~-----~s~----~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                             ..++||+++|+.+-     ...    ..+...+.++.+.. .-..||.++.||+|+..
T Consensus       194 ~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       194 RKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhc
Confidence                   48999999997552     111    23444455554332 24899999999999863

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.25  E-value=4.1e-06  Score=66.73  Aligned_cols=77  Identities=14%  Similarity=0.047  Sum_probs=57.8

Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH---HHHH--------HhhhccCC
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI---KNVS--------EKATKVKL  156 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~---~~~~--------~~sa~~~~  156 (171)
                      .++|.+++|++.....++..+..|+....    ..++|+++|+||+|+.+....+..   .+.+        ..||+++.
T Consensus       119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        119 ANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            46999999999988888999999877552    257899999999999653221112   1221        44999999


Q ss_pred             CHHHHHHHHHHH
Q psy11510        157 NKQSKFQVLLNE  168 (171)
Q Consensus       157 ~v~~~f~~l~~~  168 (171)
                      |++++++.+...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999988653

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.24  E-value=1.6e-06  Score=60.24  Aligned_cols=21  Identities=14%  Similarity=0.203  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      +++++|.+|+|||||++++.+
T Consensus        85 ~~~~~G~~~vGKstlin~l~~  105 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVG  105 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            899999999999999999997

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.19  E-value=6.7e-06  Score=65.40  Aligned_cols=102  Identities=14%  Similarity=0.114  Sum_probs=73.5

Q ss_pred             CCCCCceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------------------
Q psy11510         32 RPQVSNVAVVSLLRNKNGGETLILKKKKM---------------------------------------------------   60 (171)
Q Consensus        32 ~~~~~~~~ki~liG~~~~GKttli~~~~~---------------------------------------------------   60 (171)
                      ....+.++.+...|.-+.|||||+-.+..                                                   
T Consensus       111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a  190 (527)
T COG5258         111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA  190 (527)
T ss_pred             ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence            34478899999999999999999876665                                                   


Q ss_pred             -----cccCceEEEEEecCCccchhH-HHHHhh-hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510         61 -----IMTFRFKLNIWDVGGQKSLRS-YWRNYF-ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus        61 -----~~~~~~~~~i~d~~g~~~~~~-~~~~~~-~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                           +...+.-+.+.|+.|++.+-. .....+ ++.|-.++++-+++..+-- .++.+--.+    .-+.|++++.+|+
T Consensus       191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~----a~~lPviVvvTK~  265 (527)
T COG5258         191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIAL----AMELPVIVVVTKI  265 (527)
T ss_pred             HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhh----hhcCCEEEEEEec
Confidence                 344556789999999998744 334433 5789999999988864321 112222221    2479999999999


Q ss_pred             CCCCC
Q psy11510        134 DIEGA  138 (171)
Q Consensus       134 Dl~~~  138 (171)
                      |+.+.
T Consensus       266 D~~~d  270 (527)
T COG5258         266 DMVPD  270 (527)
T ss_pred             ccCcH
Confidence            99763

>PRK00098 GTPase RsgA; Reviewed

Probab=98.18  E-value=2.7e-06  Score=66.47  Aligned_cols=76  Identities=17%  Similarity=0.121  Sum_probs=53.7

Q ss_pred             hhCCCEEEEEEeCCChhhHHH-HHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHHHHHH--------HhhhccCC
Q psy11510         87 FESTDGLIWVVDSADKRRLED-CARELHELLQEERLAGATLLVFANKQDIEGAL-TPEDIKNVS--------EKATKVKL  156 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~--------~~sa~~~~  156 (171)
                      ..++|.+++|+|++++.+... +.+|+..+. .   .++|+++|+||+|+.+.. ..++.....        ..||+++.
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~-~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAE-A---NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHH-H---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            578999999999988765444 456665553 2   579999999999996321 111222222        45999999


Q ss_pred             CHHHHHHHHH
Q psy11510        157 NKQSKFQVLL  166 (171)
Q Consensus       157 ~v~~~f~~l~  166 (171)
                      |++++++.+.
T Consensus       154 gi~~L~~~l~  163 (298)
T PRK00098        154 GLDELKPLLA  163 (298)
T ss_pred             cHHHHHhhcc
Confidence            9999998764

>cd01858 NGP_1 NGP-1

Probab=98.18  E-value=7e-06  Score=58.01  Aligned_cols=73  Identities=22%  Similarity=0.209  Sum_probs=49.3

Q ss_pred             hhCCCEEEEEEeCCChhh--HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH------------Hhhh
Q psy11510         87 FESTDGLIWVVDSADKRR--LEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS------------EKAT  152 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------------~~sa  152 (171)
                      ++++|.+++|+|++++..  ...+.+    .+... ..++|+++|.||+|+.+.   +++..+.            ..||
T Consensus         6 l~~aD~il~VvD~~~p~~~~~~~i~~----~l~~~-~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~~~~~~~~~~iSa   77 (157)
T cd01858           6 IDSSDVVIQVLDARDPMGTRCKHVEE----YLKKE-KPHKHLIFVLNKCDLVPT---WVTARWVKILSKEYPTIAFHASI   77 (157)
T ss_pred             hhhCCEEEEEEECCCCccccCHHHHH----HHHhc-cCCCCEEEEEEchhcCCH---HHHHHHHHHHhcCCcEEEEEeec
Confidence            678999999999988632  233333    32221 246899999999999542   2222222            2378


Q ss_pred             ccCCCHHHHHHHHHH
Q psy11510        153 KVKLNKQSKFQVLLN  167 (171)
Q Consensus       153 ~~~~~v~~~f~~l~~  167 (171)
                      +.+.|++++++.+.+
T Consensus        78 ~~~~~~~~L~~~l~~   92 (157)
T cd01858          78 NNPFGKGSLIQLLRQ   92 (157)
T ss_pred             cccccHHHHHHHHHH
Confidence            889999998888754

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=98.18  E-value=2.7e-06  Score=60.12  Aligned_cols=25  Identities=16%  Similarity=0.239  Sum_probs=22.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.++|+++|.+|+|||||++++.+
T Consensus       100 ~~~~~v~~~G~~nvGKStliN~l~~  124 (157)
T cd01858         100 KKQISVGFIGYPNVGKSSIINTLRS  124 (157)
T ss_pred             ccceEEEEEeCCCCChHHHHHHHhc
Confidence            3568899999999999999999987

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.17  E-value=2.2e-05  Score=64.03  Aligned_cols=93  Identities=18%  Similarity=0.210  Sum_probs=57.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------cc-c------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------------------------IM-T------------   63 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------------------------~~-~------------   63 (171)
                      .+..-|+++|+.||||||.+.++..                                       .. .            
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~  177 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK  177 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence            3467899999999999999999964                                       00 0            


Q ss_pred             ---CceEEEEEecCCccchhH-HHH---Hh--hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510         64 ---FRFKLNIWDVGGQKSLRS-YWR---NY--FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQD  134 (171)
Q Consensus        64 ---~~~~~~i~d~~g~~~~~~-~~~---~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  134 (171)
                         ....+.++||+|...... +..   .+  ..+++.++||+|++..+.-....+.+.+.       -.+--+|.||.|
T Consensus       178 ~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~-------~~~~g~IlTKlD  250 (429)
T TIGR01425       178 FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDS-------VDVGSVIITKLD  250 (429)
T ss_pred             HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhc-------cCCcEEEEECcc
Confidence               245778999999654322 111   11  22578899999987654333322222221       124445577777


Q ss_pred             C
Q psy11510        135 I  135 (171)
Q Consensus       135 l  135 (171)
                      .
T Consensus       251 ~  251 (429)
T TIGR01425       251 G  251 (429)
T ss_pred             C
Confidence            5

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.16  E-value=2.2e-05  Score=62.29  Aligned_cols=96  Identities=19%  Similarity=0.203  Sum_probs=58.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------c
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------------------------------------------I   61 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------------------------------------------~   61 (171)
                      +...|+++|++|+||||.+.++..                                                       .
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~  218 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA  218 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence            467899999999999998887765                                                       0


Q ss_pred             ccCceEEEEEecCCccchhH-HH---HHhh--hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510         62 MTFRFKLNIWDVGGQKSLRS-YW---RNYF--ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus        62 ~~~~~~~~i~d~~g~~~~~~-~~---~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                      ...+..+.+.||+|...... +.   ..+.  -++|.+++|.|+...+..-+....+...      -+ +--++.||.|.
T Consensus       219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~------~~-~~giIlTKlD~  291 (336)
T PRK14974        219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA------VG-IDGVILTKVDA  291 (336)
T ss_pred             HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc------CC-CCEEEEeeecC
Confidence            11234578999999653221 11   2222  2578999999987654222111112211      12 34466899998


Q ss_pred             CCCC
Q psy11510        136 EGAL  139 (171)
Q Consensus       136 ~~~~  139 (171)
                      ....
T Consensus       292 ~~~~  295 (336)
T PRK14974        292 DAKG  295 (336)
T ss_pred             CCCc
Confidence            6643

>KOG0467|consensus

Probab=98.16  E-value=9.4e-06  Score=69.18  Aligned_cols=97  Identities=16%  Similarity=0.215  Sum_probs=76.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      ....-++.++-.-..|||||...+.-                                   .-.++..++++|+||+-+|
T Consensus         6 ~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf   85 (887)
T KOG0467|consen    6 SEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDF   85 (887)
T ss_pred             CCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccch
Confidence            45677899999999999999999986                                   3347788999999999999


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      .+.-.+..+=+|+.+.++|+...-.-+.. ..+++.+    ..+..+++|+||+|..
T Consensus        86 ~sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~----~~~~~~~lvinkidrl  137 (887)
T KOG0467|consen   86 SSEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAW----IEGLKPILVINKIDRL  137 (887)
T ss_pred             hhhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHH----HccCceEEEEehhhhH
Confidence            99888888889999999999875433322 2233333    3467888899999953

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.14  E-value=3e-06  Score=61.01  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=22.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...++++++|.+|+|||||++++.+
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~  139 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKR  139 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhC
Confidence            3458999999999999999999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=2.2e-05  Score=65.34  Aligned_cols=96  Identities=10%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      ..+++-++++|++|+|||||++.+..                +.++.-.+.+.+.|  .+...+.. ..+-+|.+++++|
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~miD-vaKIaDLVlLlId  142 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECP--SDLHQMID-VAKIADLVLLLID  142 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeCh--HHHHHHHh-HHHhhheeEEEec
Confidence            55778899999999999999999987                44555667788877  23333332 3567999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCC
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEGA  138 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~  138 (171)
                      ..=.-.++.+ + +..++..+   +.| ++.|.++.|+...
T Consensus       143 gnfGfEMETm-E-FLnil~~H---GmPrvlgV~ThlDlfk~  178 (1077)
T COG5192         143 GNFGFEMETM-E-FLNILISH---GMPRVLGVVTHLDLFKN  178 (1077)
T ss_pred             cccCceehHH-H-HHHHHhhc---CCCceEEEEeecccccC
Confidence            7654333332 2 23444443   444 7788999999773

>cd01856 YlqF YlqF

Probab=98.13  E-value=5.9e-06  Score=59.28  Aligned_cols=84  Identities=11%  Similarity=-0.003  Sum_probs=54.1

Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------H
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------E  149 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~  149 (171)
                      +........+.++|.+++|+|++++..-.. ..... .     ..+.|+++|.||+|+.+.....+..++.        .
T Consensus         8 ~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~-~-----~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~   80 (171)
T cd01856           8 KALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEK-I-----LGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLF   80 (171)
T ss_pred             HHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHh-H-----hcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEE
Confidence            334444566789999999999987643211 11111 1     1357999999999996431111221221        3


Q ss_pred             hhhccCCCHHHHHHHHHHH
Q psy11510        150 KATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       150 ~sa~~~~~v~~~f~~l~~~  168 (171)
                      .||+++.|++++.+.+.+.
T Consensus        81 iSa~~~~gi~~L~~~l~~~   99 (171)
T cd01856          81 VNAKSGKGVKKLLKAAKKL   99 (171)
T ss_pred             EECCCcccHHHHHHHHHHH
Confidence            5999999999999888765

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK13695 putative NTPase; Provisional

Probab=98.13  E-value=6.6e-06  Score=59.16  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      +||++.|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998654

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.12  E-value=3.6e-05  Score=59.43  Aligned_cols=95  Identities=15%  Similarity=0.191  Sum_probs=59.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc------------------------------------c------------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM------------------------------------I------------------   61 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~------------------------------------~------------------   61 (171)
                      .+...|+++|++|+||||.+.++..                                    .                  
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~  149 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK  149 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence            3456788899999999999988876                                    0                  


Q ss_pred             -ccCceEEEEEecCCccchhHHH----HH---hh-----hCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEE
Q psy11510         62 -MTFRFKLNIWDVGGQKSLRSYW----RN---YF-----ESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLL  127 (171)
Q Consensus        62 -~~~~~~~~i~d~~g~~~~~~~~----~~---~~-----~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~i  127 (171)
                       ...+..+.+.||+|........    ..   ..     ..+|.+++|+|++... .++..    ....+..    .+--
T Consensus       150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~----~~~g  221 (272)
T TIGR00064       150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV----GLTG  221 (272)
T ss_pred             HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC----CCCE
Confidence             0133567889999965432221    11   11     1389999999987542 33333    2222111    2456


Q ss_pred             EEEeCCCCCCC
Q psy11510        128 VFANKQDIEGA  138 (171)
Q Consensus       128 vv~nK~Dl~~~  138 (171)
                      +|.||.|....
T Consensus       222 ~IlTKlDe~~~  232 (272)
T TIGR00064       222 IILTKLDGTAK  232 (272)
T ss_pred             EEEEccCCCCC
Confidence            77999998664

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>KOG1547|consensus

Probab=98.11  E-value=1.7e-05  Score=59.57  Aligned_cols=96  Identities=13%  Similarity=0.168  Sum_probs=59.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------------------cccC--ceEEEEEecCCccch-----
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------------IMTF--RFKLNIWDVGGQKSL-----   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------------~~~~--~~~~~i~d~~g~~~~-----   79 (171)
                      ..-.++|.++|.+|.|||||++.+..                            +..+  ..+++++||||=.+.     
T Consensus        43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n  122 (336)
T KOG1547|consen   43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN  122 (336)
T ss_pred             ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence            34579999999999999999999987                            3333  467789999992211     


Q ss_pred             ---------hHHHHHhhh--------------CCCEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510         80 ---------RSYWRNYFE--------------STDGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus        80 ---------~~~~~~~~~--------------~~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                               ...++.|++              .+|+++|.+..+.- ++..+. +.++.+-+     -+-++-|+-|+|-
T Consensus       123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDt  196 (336)
T KOG1547|consen  123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADT  196 (336)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeeccc
Confidence                     111223322              46888887776542 333332 22333321     2456677788885


Q ss_pred             C
Q psy11510        136 E  136 (171)
Q Consensus       136 ~  136 (171)
                      .
T Consensus       197 l  197 (336)
T KOG1547|consen  197 L  197 (336)
T ss_pred             c
Confidence            3

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.10  E-value=5.3e-05  Score=54.31  Aligned_cols=91  Identities=19%  Similarity=0.202  Sum_probs=55.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------cccC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------------------------------------------IMTF   64 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------------------------------------------~~~~   64 (171)
                      -++++|++|+||||+...+..                                                       ....
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE   81 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            478999999999999888775                                                       0122


Q ss_pred             ceEEEEEecCCccchhH----HHHHhh--hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRS----YWRNYF--ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~----~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      +..+.+.|++|...+..    ....+.  ...+.+++|+|......   ..+......+..   + ..-+|.||.|...
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~  153 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDA  153 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence            34567789988642211    111112  24899999999865432   223333443221   2 3556679999866

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.08  E-value=3.8e-05  Score=60.54  Aligned_cols=25  Identities=16%  Similarity=0.122  Sum_probs=22.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.--++++|+.|+||||++..+..
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~  136 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAH  136 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3467889999999999999999987

>KOG0464|consensus

Probab=98.08  E-value=1.3e-06  Score=70.12  Aligned_cols=109  Identities=15%  Similarity=0.181  Sum_probs=85.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      ..+..+|-++..-.+||||...|++.                                     ++.++..++++||||+-
T Consensus        34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv  113 (753)
T KOG0464|consen   34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV  113 (753)
T ss_pred             hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence            34567889999999999999999987                                     67788999999999999


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC---CCHHHHHHHH
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA---LTPEDIKNVS  148 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~  148 (171)
                      +|+..-+..++--|+++-|||.+-...-+.+     .++.+....++|-+.++||.|...+   ...+.+++.+
T Consensus       114 df~leverclrvldgavav~dasagve~qtl-----tvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl  182 (753)
T KOG0464|consen  114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTL-----TVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKL  182 (753)
T ss_pred             eEEEEHHHHHHHhcCeEEEEeccCCccccee-----eeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence            9998888888889999999998875433333     3344555578999999999998652   3344455544

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.08  E-value=4.8e-05  Score=61.11  Aligned_cols=25  Identities=20%  Similarity=0.150  Sum_probs=21.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.-.++++|+.|+||||++.++..
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~  159 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAA  159 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456889999999999999999875

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.05  E-value=1.5e-05  Score=63.19  Aligned_cols=63  Identities=13%  Similarity=0.151  Sum_probs=46.7

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------------------cc-c---CceEEEEEecCCccc--
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------------------IM-T---FRFKLNIWDVGGQKS--   78 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------------------~~-~---~~~~~~i~d~~g~~~--   78 (171)
                      .+++-++|.+|||||||.+.+..                                 .. .   ..+.+.++|++|.-.  
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            36899999999999999999998                                 11 1   245789999988322  


Q ss_pred             --hhHHHH---HhhhCCCEEEEEEeCC
Q psy11510         79 --LRSYWR---NYFESTDGLIWVVDSA  100 (171)
Q Consensus        79 --~~~~~~---~~~~~~~~ii~v~d~~  100 (171)
                        -+-+-.   ..++++|+++.|+|..
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence              222222   3367899999999975

>cd01859 MJ1464 MJ1464

Probab=98.05  E-value=7e-06  Score=57.85  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=23.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .....+++++|.+|+||||+++++.+
T Consensus        98 ~~~~~~~~~ig~~~~Gkssl~~~l~~  123 (156)
T cd01859          98 DGKEGKVGVVGYPNVGKSSIINALKG  123 (156)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            34568899999999999999999997

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.01  E-value=9.1e-06  Score=58.31  Aligned_cols=25  Identities=8%  Similarity=0.098  Sum_probs=22.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...++++++|.+|+|||||++++.+
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~  137 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRG  137 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhC
Confidence            3457999999999999999999997

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd03114 ArgK-like The function of this protein family is unkown

Probab=97.98  E-value=6.7e-05  Score=52.70  Aligned_cols=20  Identities=5%  Similarity=0.185  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      +.++|..|+||||++..+..
T Consensus         2 i~~~G~~GsGKTt~~~~l~~   21 (148)
T cd03114           2 IGITGVPGAGKSTLIDALIT   21 (148)
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999887

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.97  E-value=1e-05  Score=62.58  Aligned_cols=40  Identities=15%  Similarity=0.147  Sum_probs=31.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecCCc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVGGQ   76 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~g~   76 (171)
                      .+.++++++|.+|+|||||++++.+                  +.. .-.+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL-SDGLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe-CCCEEEEECCCc
Confidence            3568999999999999999999987                  111 114689999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>KOG1486|consensus

Probab=97.97  E-value=5e-05  Score=57.43  Aligned_cols=80  Identities=20%  Similarity=0.163  Sum_probs=57.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHH-------HHhhhC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYW-------RNYFES   89 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~-------~~~~~~   89 (171)
                      .-.-+|+++|-+++|||||+..+..                   +.+.+..+++.|.||.-.-.+.-       -+..+-
T Consensus        60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence            3467999999999999999999998                   56677888999999942221111       123456


Q ss_pred             CCEEEEEEeCCChhhHH-HHHHHHHHH
Q psy11510         90 TDGLIWVVDSADKRRLE-DCARELHEL  115 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~-~~~~~~~~i  115 (171)
                      +|.+++|.|++..+--. -++..+..+
T Consensus       140 aDlilMvLDatk~e~qr~~le~ELe~v  166 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQREILEKELEAV  166 (364)
T ss_pred             ccEEEEEecCCcchhHHHHHHHHHHHh
Confidence            99999999998866544 344455554

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.96  E-value=3.7e-05  Score=55.58  Aligned_cols=91  Identities=19%  Similarity=0.176  Sum_probs=56.0

Q ss_pred             EEEEeCCCCcHHHHHHHHh-c------------------------------------------------------cccC-
Q psy11510         41 VSLLRNKNGGETLILKKKK-M------------------------------------------------------IMTF-   64 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~-~------------------------------------------------------~~~~-   64 (171)
                      +++.|--|||||||++++. .                                                      .... 
T Consensus         3 ~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~   82 (178)
T PF02492_consen    3 IIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYE   82 (178)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcC
Confidence            6889999999999999999 3                                                      1222 


Q ss_pred             -ceEEEEEecCCccchhHH--H-HHh--hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         65 -RFKLNIWDVGGQKSLRSY--W-RNY--FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        65 -~~~~~i~d~~g~~~~~~~--~-~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                       ....-+.+++|......+  . +.+  .-..+.++.|+|+..-.........+...+..      .=+++.||+|+.+
T Consensus        83 ~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~~  155 (178)
T PF02492_consen   83 ERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLVS  155 (178)
T ss_dssp             GC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGHH
T ss_pred             CCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccCC
Confidence             344566788885544443  1 111  12479999999997643333333333333332      3357799999866

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.95  E-value=1.2e-05  Score=62.55  Aligned_cols=41  Identities=12%  Similarity=0.178  Sum_probs=32.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------c--ccCceEEEEEecCCc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------I--MTFRFKLNIWDVGGQ   76 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------~--~~~~~~~~i~d~~g~   76 (171)
                      .+.++++++|.+|||||||++++.+               .  -..+-.+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCc
Confidence            4568999999999999999999988               0  001124679999995

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=97.95  E-value=2.6e-05  Score=54.17  Aligned_cols=48  Identities=21%  Similarity=0.270  Sum_probs=34.8

Q ss_pred             HhhhCCCEEEEEEeCCChhhHH--HHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         85 NYFESTDGLIWVVDSADKRRLE--DCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        85 ~~~~~~~~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      ..+.++|++++|+|+.++.+..  .+.+++...     ..++|+++|+||+|+.+
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~   56 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLT   56 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCC
Confidence            3478899999999998876543  343433322     14789999999999854

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>KOG1491|consensus

Probab=97.94  E-value=3.5e-05  Score=60.42  Aligned_cols=67  Identities=15%  Similarity=0.183  Sum_probs=49.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------cccCceEEEEEecCCccc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------IMTFRFKLNIWDVGGQKS   78 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------~~~~~~~~~i~d~~g~~~   78 (171)
                      ..+.+++-++|.++||||||++.+..                                    -...+..++++|++|.-+
T Consensus        17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk   96 (391)
T KOG1491|consen   17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK   96 (391)
T ss_pred             CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence            45789999999999999999999998                                    122346789999998432


Q ss_pred             hhH----H---HHHhhhCCCEEEEEEeCCC
Q psy11510         79 LRS----Y---WRNYFESTDGLIWVVDSAD  101 (171)
Q Consensus        79 ~~~----~---~~~~~~~~~~ii~v~d~~~  101 (171)
                      -.+    +   .-+.++.+|+++-|+++..
T Consensus        97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   97 GASAGEGLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             CcccCcCchHHHHHhhhhccceeEEEEecC
Confidence            222    2   2334678999999998643

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.91  E-value=1.7e-05  Score=55.99  Aligned_cols=25  Identities=12%  Similarity=0.163  Sum_probs=23.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ....+++++|.+|+||||+++.+.+
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~  122 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLN  122 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHc
Confidence            4568899999999999999999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.90  E-value=4.3e-05  Score=53.86  Aligned_cols=73  Identities=15%  Similarity=0.200  Sum_probs=47.2

Q ss_pred             CEEEEEEeCCChhhHHHHHHHHH-HHHhccccCCCeEEEEEeCCCCCCCCCHHH-HHHHH--------HhhhccCCCHHH
Q psy11510         91 DGLIWVVDSADKRRLEDCARELH-ELLQEERLAGATLLVFANKQDIEGALTPED-IKNVS--------EKATKVKLNKQS  160 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~-~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~--------~~sa~~~~~v~~  160 (171)
                      |.+++|+|+.++.+...  .++. ..+.   ..++|+++|+||+|+.+.....+ +..+.        ..||+++.|+++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~   75 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEK   75 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence            68999999988765432  1222 2222   25799999999999954211111 11111        348999999999


Q ss_pred             HHHHHHHH
Q psy11510        161 KFQVLLNE  168 (171)
Q Consensus       161 ~f~~l~~~  168 (171)
                      +.+.+.+.
T Consensus        76 L~~~i~~~   83 (155)
T cd01849          76 KESAFTKQ   83 (155)
T ss_pred             HHHHHHHH
Confidence            99987653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG1534|consensus

Probab=97.89  E-value=4.5e-05  Score=56.21  Aligned_cols=110  Identities=13%  Similarity=0.053  Sum_probs=67.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------------------------------------------
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------------------------------------------   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------------------------------------------   60 (171)
                      ++-++++|+.|+||||+.+.+..                                                         
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae~f~y~~~iDiRdlIsvdDVmEdl~~GPNGgLv~cmEyl   82 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAEHFNYPVTIDIRDLISVDDVMEDLDLGPNGGLVYCMEYL   82 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHHhhCCcccccHHHhccHHHHHHHhccCCCccchhHHHHH
Confidence            56789999999999999999887                                                         


Q ss_pred             ----------cccCceEEEEEecCCccch---hHHHHHhhh-----C-CCEEEEEEeCCC-hhhHHHHHHHHHHHHhccc
Q psy11510         61 ----------IMTFRFKLNIWDVGGQKSL---RSYWRNYFE-----S-TDGLIWVVDSAD-KRRLEDCARELHELLQEER  120 (171)
Q Consensus        61 ----------~~~~~~~~~i~d~~g~~~~---~~~~~~~~~-----~-~~~ii~v~d~~~-~~s~~~~~~~~~~i~~~~~  120 (171)
                                ...-.-.+-++|.|||-..   .+..+...+     + -=+++++.|+.= .++.+.+.--+..+.. ..
T Consensus        83 ~~NldwL~~~~Gd~eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA-Mi  161 (273)
T KOG1534|consen   83 LENLDWLEEEIGDVEDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA-MI  161 (273)
T ss_pred             HHHHHHHHhhccCccCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH-HH
Confidence                      1112334678999997532   223333322     1 124456666422 1122222221222211 11


Q ss_pred             cCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510        121 LAGATLLVFANKQDIEGALTPEDIKNVS  148 (171)
Q Consensus       121 ~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  148 (171)
                      .-.+|.|-|.+|.|+....+.+++++++
T Consensus       162 ~lE~P~INvlsKMDLlk~~~k~~l~~Fl  189 (273)
T KOG1534|consen  162 SLEVPHINVLSKMDLLKDKNKKELERFL  189 (273)
T ss_pred             HhcCcchhhhhHHHHhhhhhHHHHHHhc
Confidence            1368999999999998878888888887

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.89  E-value=3.8e-05  Score=44.70  Aligned_cols=44  Identities=18%  Similarity=0.404  Sum_probs=28.5

Q ss_pred             CCCEEEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510         89 STDGLIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQD  134 (171)
Q Consensus        89 ~~~~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  134 (171)
                      -.++++|++|.+...  +.++-...+.++..  ..+++|+++|.||+|
T Consensus        13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~--~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKP--LFPNKPVIVVLNKID   58 (58)
T ss_dssp             T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHH--HTTTS-EEEEE--TT
T ss_pred             hcceEEEEEcCCCCCCCCHHHHHHHHHHHHH--HcCCCCEEEEEeccC
Confidence            478999999998844  56666677777743  346899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.89  E-value=5.5e-06  Score=58.86  Aligned_cols=22  Identities=14%  Similarity=0.140  Sum_probs=20.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.++++|++|||||||+|.+..
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~   57 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLP   57 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            6789999999999999999998

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.88  E-value=8.2e-05  Score=60.63  Aligned_cols=24  Identities=21%  Similarity=0.142  Sum_probs=20.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++|+.|+||||++.++..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999986653

>cd01855 YqeH YqeH

Probab=97.87  E-value=1.5e-05  Score=58.13  Aligned_cols=24  Identities=13%  Similarity=0.112  Sum_probs=21.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +..+++++|.+|+|||||++.+.+
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~  149 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLK  149 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHH
Confidence            456899999999999999999985

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.87  E-value=0.00033  Score=56.67  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|+++|+.||||||++..+..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~  263 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAW  263 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Confidence            346899999999999999999975

>KOG2486|consensus

Probab=97.87  E-value=3.2e-05  Score=59.15  Aligned_cols=128  Identities=13%  Similarity=0.089  Sum_probs=79.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------ccc--CceEEEEEecCC----------ccchhHHHHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------IMT--FRFKLNIWDVGG----------QKSLRSYWRN   85 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------~~~--~~~~~~i~d~~g----------~~~~~~~~~~   85 (171)
                      ..++..++++|.+++|||+|++-+..                 ++.  -+-.+.+.|.||          ...+..+...
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~  212 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS  212 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence            45679999999999999999999988                 121  223456779999          2344446666


Q ss_pred             hhhCC---CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC------CCHHHHHH----------
Q psy11510         86 YFEST---DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA------LTPEDIKN----------  146 (171)
Q Consensus        86 ~~~~~---~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~------~~~~~~~~----------  146 (171)
                      |+.+-   -.+++++|++.+  ++.......+.+.+   .++|..+|.||||....      .+...+..          
T Consensus       213 Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f  287 (320)
T KOG2486|consen  213 YLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF  287 (320)
T ss_pred             HHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence            66543   233445666543  22222222233333   58999999999997431      11111222          


Q ss_pred             -----HHHhhhccCCCHHHHHHHHHH
Q psy11510        147 -----VSEKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       147 -----~~~~sa~~~~~v~~~f~~l~~  167 (171)
                           ++.+|+-++.|++++.-.+++
T Consensus       288 ~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  288 LVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             eccCCceeeecccccCceeeeeehhh
Confidence                 114678888888887766654

>TIGR00959 ffh signal recognition particle protein

Probab=97.85  E-value=0.00019  Score=58.75  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=19.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKK   59 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~   59 (171)
                      .++.-++++|++|+||||.+-++.
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA  120 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLA  120 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHH
Confidence            346789999999999999955443

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.84  E-value=0.00015  Score=59.49  Aligned_cols=25  Identities=16%  Similarity=0.113  Sum_probs=22.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+...|+++|.+|+||||.+..+..
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~  117 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLAR  117 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            3567899999999999999998876

>KOG0448|consensus

Probab=97.84  E-value=0.00016  Score=61.34  Aligned_cols=98  Identities=15%  Similarity=0.274  Sum_probs=66.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      .+...||++.|..++||||+++.++.                                                      
T Consensus       106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~  185 (749)
T KOG0448|consen  106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD  185 (749)
T ss_pred             hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence            56789999999999999999999998                                                      


Q ss_pred             ---------cccCc------eEEEEEecCCccc---hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccC
Q psy11510         61 ---------IMTFR------FKLNIWDVGGQKS---LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA  122 (171)
Q Consensus        61 ---------~~~~~------~~~~i~d~~g~~~---~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~  122 (171)
                               +..++      --+.+.|.||...   ..+-...+..++|++|||.++.+--+..+ ..++....+.    
T Consensus       186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~----  260 (749)
T KOG0448|consen  186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE----  260 (749)
T ss_pred             cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc----
Confidence                     00000      1245677888432   33344567789999999999877554433 3445555332    


Q ss_pred             CCeEEEEEeCCCCCC
Q psy11510        123 GATLLVFANKQDIEG  137 (171)
Q Consensus       123 ~~p~ivv~nK~Dl~~  137 (171)
                      ++-++++-||.|...
T Consensus       261 KpniFIlnnkwDasa  275 (749)
T KOG0448|consen  261 KPNIFILNNKWDASA  275 (749)
T ss_pred             CCcEEEEechhhhhc
Confidence            344666677889754

>KOG1143|consensus

Probab=97.84  E-value=5.1e-05  Score=60.37  Aligned_cols=98  Identities=12%  Similarity=0.076  Sum_probs=67.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------ccc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM------------------------------------------------------IMT   63 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~------------------------------------------------------~~~   63 (171)
                      .++++++|...+|||||+--+..                                                      .+.
T Consensus       167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~  246 (591)
T KOG1143|consen  167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK  246 (591)
T ss_pred             EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence            68999999999999999876665                                                      233


Q ss_pred             CceEEEEEecCCccchhHHHHHhh--hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510         64 FRFKLNIWDVGGQKSLRSYWRNYF--ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT  140 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~~~~~~~--~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~  140 (171)
                      ....+.+.|.+|+.+|....-.-+  ...|..++|+++....+... ++.+.-+..    -++|.+++.+|.|+.+...
T Consensus       247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~  320 (591)
T KOG1143|consen  247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG  320 (591)
T ss_pred             hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence            445678999999988865332222  24788899998877543211 111222211    3799999999999987543

>KOG0780|consensus

Probab=97.82  E-value=0.00016  Score=57.74  Aligned_cols=107  Identities=18%  Similarity=0.238  Sum_probs=71.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      ..++--|.++|..|+||||-+-++..                                                      
T Consensus        98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~  177 (483)
T KOG0780|consen   98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD  177 (483)
T ss_pred             cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence            45667799999999999999888876                                                      


Q ss_pred             -cccCceEEEEEecCCccch-hHHHHHh-----hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhc---------------
Q psy11510         61 -IMTFRFKLNIWDVGGQKSL-RSYWRNY-----FESTDGLIWVVDSADKRRLEDCARELHELLQE---------------  118 (171)
Q Consensus        61 -~~~~~~~~~i~d~~g~~~~-~~~~~~~-----~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~---------------  118 (171)
                       ....+..+.|.||+|...- .++.+..     .-++|-+|||.|++-.+.-+....-+++...-               
T Consensus       178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vdvg~vIlTKlDGhakGG  257 (483)
T KOG0780|consen  178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVDVGAVILTKLDGHAKGG  257 (483)
T ss_pred             HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhccceEEEEecccCCCCC
Confidence             4556788899999995322 1222221     22689999999999877766555545543321               


Q ss_pred             -----cccCCCeEEEEEeC--CCCCCCCCH
Q psy11510        119 -----ERLAGATLLVFANK--QDIEGALTP  141 (171)
Q Consensus       119 -----~~~~~~p~ivv~nK--~Dl~~~~~~  141 (171)
                           ....+.|++++|+-  .|-.++.++
T Consensus       258 gAlSaVaaTksPIiFIGtGEhmdDlE~F~p  287 (483)
T KOG0780|consen  258 GALSAVAATKSPIIFIGTGEHMDDLEPFDP  287 (483)
T ss_pred             ceeeehhhhCCCEEEEecCccccccCCCCh
Confidence                 01136888888754  554444433

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.82  E-value=0.00023  Score=57.68  Aligned_cols=80  Identities=16%  Similarity=0.183  Sum_probs=55.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      .+++..|+++|..|+||||..-++..                                                      
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~  176 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE  176 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence            45788999999999999998888776                                                      


Q ss_pred             -cccCceEEEEEecCCccchhH-HHHHh-----hhCCCEEEEEEeCCChhhHHHHHHHHHH
Q psy11510         61 -IMTFRFKLNIWDVGGQKSLRS-YWRNY-----FESTDGLIWVVDSADKRRLEDCARELHE  114 (171)
Q Consensus        61 -~~~~~~~~~i~d~~g~~~~~~-~~~~~-----~~~~~~ii~v~d~~~~~s~~~~~~~~~~  114 (171)
                       .......+.|.||+|...... +....     .-++|-++||+|+.-.+.-......+++
T Consensus       177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e  237 (451)
T COG0541         177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNE  237 (451)
T ss_pred             HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhh
Confidence             223345688999999544332 21111     2368999999999876654444443443

>PRK10867 signal recognition particle protein; Provisional

Probab=97.81  E-value=0.00026  Score=58.08  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=19.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++.-|+++|++|+||||.+-++..
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~  122 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAK  122 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHH
Confidence            3467899999999999996666543

>KOG0460|consensus

Probab=97.81  E-value=0.00018  Score=56.65  Aligned_cols=98  Identities=19%  Similarity=0.186  Sum_probs=64.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------------------cc--cCceEEEEEecCCccch
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------------------IM--TFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------------------~~--~~~~~~~i~d~~g~~~~   79 (171)
                      .+++++|--||.-.-|||||-..+..                                 +.  -..-.+.=.|.||+.+|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            67899999999999999999998887                                 11  11222334588998877


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCC-CeEEEEEeCCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAG-ATLLVFANKQDIEG  137 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~p~ivv~nK~Dl~~  137 (171)
                      -...-.-...-|+.|+|+.++|.. +.+.++.+.-- ++.   + ..+++++||.|+.+
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLA-rQV---GV~~ivvfiNKvD~V~  184 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLA-RQV---GVKHIVVFINKVDLVD  184 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHH-HHc---CCceEEEEEecccccC
Confidence            543333344579999999999943 22222211111 222   3 34777899999974

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.81  E-value=3.3e-05  Score=61.04  Aligned_cols=42  Identities=12%  Similarity=0.172  Sum_probs=32.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------c------ccCceEEEEEecCCc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------I------MTFRFKLNIWDVGGQ   76 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------~------~~~~~~~~i~d~~g~   76 (171)
                      ..+..++.++|.+||||||+|+++.+           .      -.-.-.+.++||||-
T Consensus       129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGi  187 (322)
T COG1161         129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGI  187 (322)
T ss_pred             CccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCc
Confidence            34568899999999999999999999           0      001122688999994

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=97.80  E-value=0.00025  Score=53.17  Aligned_cols=69  Identities=16%  Similarity=0.090  Sum_probs=47.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------------cc---cCceEEEEEecCCccchhH------HH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------IM---TFRFKLNIWDVGGQKSLRS------YW   83 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------~~---~~~~~~~i~d~~g~~~~~~------~~   83 (171)
                      ..+..-|.++|+.++|||+|+|++.+                      ..   ..+..+.+.||+|......      ..
T Consensus         4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~   83 (224)
T cd01851           4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR   83 (224)
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence            45678899999999999999999987                      01   1346788999999543211      12


Q ss_pred             HHhhhC--CCEEEEEEeCCChh
Q psy11510         84 RNYFES--TDGLIWVVDSADKR  103 (171)
Q Consensus        84 ~~~~~~--~~~ii~v~d~~~~~  103 (171)
                      ...+.-  ++.+|+..+.+...
T Consensus        84 ~~~l~~llss~~i~n~~~~~~~  105 (224)
T cd01851          84 LFALATLLSSVLIYNSWETILG  105 (224)
T ss_pred             HHHHHHHHhCEEEEeccCcccH
Confidence            222223  78888877765544

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.78  E-value=0.00026  Score=52.98  Aligned_cols=45  Identities=40%  Similarity=0.515  Sum_probs=30.9

Q ss_pred             hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCC-CeEEEEEeCCCCC
Q psy11510         87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAG-ATLLVFANKQDIE  136 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-~p~ivv~nK~Dl~  136 (171)
                      .+++|.++.|+|.+.. ++...++ +.++.++   -+ .++.+|.||.|..
T Consensus       153 ~~~vD~vivVvDpS~~-sl~taer-i~~L~~e---lg~k~i~~V~NKv~e~  198 (255)
T COG3640         153 IEGVDLVIVVVDPSYK-SLRTAER-IKELAEE---LGIKRIFVVLNKVDEE  198 (255)
T ss_pred             ccCCCEEEEEeCCcHH-HHHHHHH-HHHHHHH---hCCceEEEEEeeccch
Confidence            4579999999998764 3433322 3444333   24 8999999999965

>PRK12288 GTPase RsgA; Reviewed

Probab=97.77  E-value=3.1e-05  Score=61.78  Aligned_cols=21  Identities=5%  Similarity=0.123  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -++++|.+|||||||+|++..
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~  227 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLP  227 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhcc
Confidence            379999999999999999997

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=97.77  E-value=6.8e-05  Score=57.98  Aligned_cols=80  Identities=13%  Similarity=0.064  Sum_probs=51.6

Q ss_pred             HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------Hhhhc
Q psy11510         82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATK  153 (171)
Q Consensus        82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~  153 (171)
                      .....++.+|++++|+|+..+.+-+.  .++...+     .+.|+++|.||+|+.+....+...+..        ..||+
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~   86 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAK   86 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECC
Confidence            34555789999999999987644322  1122232     368999999999995421111111112        24889


Q ss_pred             cCCCHHHHHHHHHHH
Q psy11510        154 VKLNKQSKFQVLLNE  168 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~  168 (171)
                      ++.|++++.+.+.+.
T Consensus        87 ~~~gi~~L~~~i~~~  101 (276)
T TIGR03596        87 KGKGVKKIIKAAKKL  101 (276)
T ss_pred             CcccHHHHHHHHHHH
Confidence            999999988877653

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=97.75  E-value=0.00018  Score=56.77  Aligned_cols=74  Identities=16%  Similarity=0.258  Sum_probs=41.0

Q ss_pred             eEEEEEecCCccchhHHHHHhhh--------CCCEEEEEEeCCChhhH-HHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         66 FKLNIWDVGGQKSLRSYWRNYFE--------STDGLIWVVDSADKRRL-EDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        66 ~~~~i~d~~g~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      ....+.++.|...-..+...++.        ..++++.|+|+..-... +.......++.       ..=+++.||+|+.
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~-------~AD~IvlnK~Dl~  163 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG-------YADRILLTKTDVA  163 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH-------hCCEEEEeccccC
Confidence            33456788887665555555432        25889999998753221 11111122331       2345779999987


Q ss_pred             CCCCHHHHHHHH
Q psy11510        137 GALTPEDIKNVS  148 (171)
Q Consensus       137 ~~~~~~~~~~~~  148 (171)
                      .+  .+.+++.+
T Consensus       164 ~~--~~~~~~~l  173 (318)
T PRK11537        164 GE--AEKLRERL  173 (318)
T ss_pred             CH--HHHHHHHH
Confidence            63  23444444

>TIGR00092 GTP-binding protein YchF

Probab=97.74  E-value=0.00015  Score=58.10  Aligned_cols=62  Identities=11%  Similarity=0.028  Sum_probs=45.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------------c---------------ccCceEEEEEecCCccchh-
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------------I---------------MTFRFKLNIWDVGGQKSLR-   80 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------------~---------------~~~~~~~~i~d~~g~~~~~-   80 (171)
                      +++.++|.+++|||||++.+.+                      +               ......+.+.|+||.-.-. 
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998                      0               0112356788999943321 


Q ss_pred             ------HHHHHhhhCCCEEEEEEeCC
Q psy11510         81 ------SYWRNYFESTDGLIWVVDSA  100 (171)
Q Consensus        81 ------~~~~~~~~~~~~ii~v~d~~  100 (171)
                            ...-..++++|+++.|++..
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                  12334577899999999974

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.74  E-value=0.00047  Score=46.86  Aligned_cols=24  Identities=13%  Similarity=0.050  Sum_probs=21.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-.+++.|++|+|||++++.+..
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~   41 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIAN   41 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999998

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.70  E-value=0.0004  Score=55.95  Aligned_cols=96  Identities=16%  Similarity=0.151  Sum_probs=59.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------------------cccC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------------------------------------IMTF   64 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------------------------------------~~~~   64 (171)
                      .+.-.|+++|+.||||||-+-++..                                                   ....
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~  280 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR  280 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh
Confidence            3577899999999999998877665                                                   2233


Q ss_pred             ceEEEEEecCCccchhH----HHHHhhhCC--CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRS----YWRNYFEST--DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~----~~~~~~~~~--~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      +..+.+.||.|...+..    ....++..+  .-+.+|++++...  +.+.+.+...    ..-+.. -++.||.|....
T Consensus       281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f----~~~~i~-~~I~TKlDET~s  353 (407)
T COG1419         281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQF----SLFPID-GLIFTKLDETTS  353 (407)
T ss_pred             cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHh----ccCCcc-eeEEEcccccCc
Confidence            44678899999665433    234444433  4456677877653  3444434443    111222 244788887654

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.69  E-value=0.0003  Score=47.66  Aligned_cols=91  Identities=12%  Similarity=0.199  Sum_probs=49.7

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-cc-----cCceEEEEEecCCccchhHHH------------------------HHhh
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-IM-----TFRFKLNIWDVGGQKSLRSYW------------------------RNYF   87 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-~~-----~~~~~~~i~d~~g~~~~~~~~------------------------~~~~   87 (171)
                      .--+++.|++|+|||++++++.. ..     .....+-..+.+........+                        ...+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l   83 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL   83 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence            34588999999999999999998 11     113333344444322111111                        1223


Q ss_pred             hCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510         88 ESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANK  132 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK  132 (171)
                      ......++++|-.+.- + ....+++..+.+   ..+++++++|+-
T Consensus        84 ~~~~~~~lviDe~~~l~~-~~~l~~l~~l~~---~~~~~vvl~G~~  125 (131)
T PF13401_consen   84 DRRRVVLLVIDEADHLFS-DEFLEFLRSLLN---ESNIKVVLVGTP  125 (131)
T ss_dssp             HHCTEEEEEEETTHHHHT-HHHHHHHHHHTC---SCBEEEEEEESS
T ss_pred             HhcCCeEEEEeChHhcCC-HHHHHHHHHHHh---CCCCeEEEEECh
Confidence            3445577788854432 2 333344455544   467888888875

>KOG0465|consensus

Probab=97.69  E-value=6.3e-05  Score=62.94  Aligned_cols=101  Identities=16%  Similarity=0.206  Sum_probs=76.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKS   78 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~   78 (171)
                      ++.-+|-++-.-.+||||+-++++.                                     ....+..++++||||+-+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            4567788888899999999999987                                     445588999999999988


Q ss_pred             hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH
Q psy11510         79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP  141 (171)
Q Consensus        79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~  141 (171)
                      |.-.-+..++--|+.++|+|+...-.-+...-| +++    .--++|.+.+.||.|.-.+.+-
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~----~ry~vP~i~FiNKmDRmGa~~~  174 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQM----KRYNVPRICFINKMDRMGASPF  174 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHHH-HHH----HhcCCCeEEEEehhhhcCCChH
Confidence            877666667888999999998764333222222 233    2248999999999998775443

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.68  E-value=0.00029  Score=57.35  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-++++|++||||||++.++..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999999874

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.67  E-value=0.00036  Score=60.69  Aligned_cols=23  Identities=22%  Similarity=0.166  Sum_probs=20.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .--|+++|+.||||||.+.++..
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~  207 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAA  207 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHh
Confidence            34689999999999999998886

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.67  E-value=0.001  Score=42.16  Aligned_cols=90  Identities=13%  Similarity=0.014  Sum_probs=53.9

Q ss_pred             EEEEeCCCCcHHHHHHHHhc-cc--cCce----EEEEEecCCccchhHH-HHHhhhCCCEEEEEEeCCChhhHHHHHHHH
Q psy11510         41 VSLLRNKNGGETLILKKKKM-IM--TFRF----KLNIWDVGGQKSLRSY-WRNYFESTDGLIWVVDSADKRRLEDCAREL  112 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~-~~--~~~~----~~~i~d~~g~~~~~~~-~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~  112 (171)
                      +++.|..|+||||+...+.. ..  +.++    .+.+.|+++....... .......+|.++++++.... +........
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~-~~~~~~~~~   80 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDDYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL-AVLGARRLT   80 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECCEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-hHHHHHHHH
Confidence            67889999999999999887 11  1111    3678899886543321 14456678999999886554 343333332


Q ss_pred             HHHHhccccCCCeEEEEEe
Q psy11510        113 HELLQEERLAGATLLVFAN  131 (171)
Q Consensus       113 ~~i~~~~~~~~~p~ivv~n  131 (171)
                      ............+..++.|
T Consensus        81 ~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          81 EVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             HHHHHhhccCCceEEEEeC
Confidence            2232222234455555544

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.64  E-value=0.00061  Score=57.01  Aligned_cols=25  Identities=20%  Similarity=0.278  Sum_probs=21.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.-.|+++|+.|+||||++.++..
T Consensus       348 ~~G~vIaLVGPtGvGKTTtaakLAa  372 (559)
T PRK12727        348 ERGGVIALVGPTGAGKTTTIAKLAQ  372 (559)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3457889999999999999988764

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=97.63  E-value=0.00063  Score=53.75  Aligned_cols=101  Identities=19%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhc------------------cc--------------------------------------cC
Q psy11510         41 VSLLRNKNGGETLILKKKKM------------------IM--------------------------------------TF   64 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~------------------~~--------------------------------------~~   64 (171)
                      .++-|-=|+||||++++++.                  ++                                      .+
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~   83 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD   83 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence            46788999999999999998                  11                                      12


Q ss_pred             ceEEEEEecCCccchhHHHHHhhh--------CCCEEEEEEeCCChhhH-HHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFE--------STDGLIWVVDSADKRRL-EDCARELHELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~--------~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                      ....-++++.|-..-.+....+..        ..|+++-|+|+..-..- ..+.+.+.+-+.      ..=++++||.|+
T Consensus        84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dl  157 (323)
T COG0523          84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDL  157 (323)
T ss_pred             CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccC
Confidence            233446666665544444444333        35889999998774432 223333333322      234578999999


Q ss_pred             CCCCCHHHHHHH
Q psy11510        136 EGALTPEDIKNV  147 (171)
Q Consensus       136 ~~~~~~~~~~~~  147 (171)
                      .++...+.++..
T Consensus       158 v~~~~l~~l~~~  169 (323)
T COG0523         158 VDAEELEALEAR  169 (323)
T ss_pred             CCHHHHHHHHHH
Confidence            874433333333

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.63  E-value=0.00034  Score=58.03  Aligned_cols=23  Identities=22%  Similarity=0.156  Sum_probs=20.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .--++++|+.||||||.+.++..
T Consensus       256 g~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        256 GGVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             CcEEEEECCCCccHHHHHHHHHH
Confidence            35799999999999999999886

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.63  E-value=0.00046  Score=55.02  Aligned_cols=20  Identities=10%  Similarity=0.104  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      .++.|--|+|||||+++++.
T Consensus         7 ~iltGFLGaGKTTll~~ll~   26 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQ   26 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHh
Confidence            67889999999999999986

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK12289 GTPase RsgA; Reviewed

Probab=97.63  E-value=7e-05  Score=59.84  Aligned_cols=21  Identities=5%  Similarity=0.124  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .++++|.+|||||||+|.+..
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~  194 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIP  194 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcC
Confidence            389999999999999999997

>PF05729 NACHT: NACHT domain

Probab=97.62  E-value=0.00073  Score=47.37  Aligned_cols=90  Identities=14%  Similarity=0.218  Sum_probs=51.1

Q ss_pred             EEEEeCCCCcHHHHHHHHhc-----cccC-ceEEEEEecCC----ccc---hh---------------HHHHHhhhCCCE
Q psy11510         41 VSLLRNKNGGETLILKKKKM-----IMTF-RFKLNIWDVGG----QKS---LR---------------SYWRNYFESTDG   92 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~-----~~~~-~~~~~i~d~~g----~~~---~~---------------~~~~~~~~~~~~   92 (171)
                      +++.|++|+||||+++++..     .... ...+.+|-..+    ...   ..               ..+........-
T Consensus         3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (166)
T PF05729_consen    3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR   82 (166)
T ss_pred             EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence            78999999999999999997     1111 12333332222    110   00               011223445677


Q ss_pred             EEEEEeCCChhhH-------HHHHHHHHHHHhccccCCCeEEEEE
Q psy11510         93 LIWVVDSADKRRL-------EDCARELHELLQEERLAGATLLVFA  130 (171)
Q Consensus        93 ii~v~d~~~~~s~-------~~~~~~~~~i~~~~~~~~~p~ivv~  130 (171)
                      +++++|.-|.-.-       .....++..++.....++..+++..
T Consensus        83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~  127 (166)
T PF05729_consen   83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITS  127 (166)
T ss_pred             eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEE
Confidence            7888886552221       2344566666665445677777664

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.62  E-value=0.00023  Score=64.36  Aligned_cols=96  Identities=19%  Similarity=0.272  Sum_probs=61.9

Q ss_pred             EEEEeCCCCcHHHHHHHHhc------------cc---------cCceEEEEEecCCcc--------chhHHHHHhh----
Q psy11510         41 VSLLRNKNGGETLILKKKKM------------IM---------TFRFKLNIWDVGGQK--------SLRSYWRNYF----   87 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~------------~~---------~~~~~~~i~d~~g~~--------~~~~~~~~~~----   87 (171)
                      .++||++|+||||++..--.            ..         .-.-.-.++||.|..        .....|..++    
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLk  207 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLK  207 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHHH
Confidence            58999999999999876554            11         112234678999932        3344677663    


Q ss_pred             -----hCCCEEEEEEeCCChh------h---HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         88 -----ESTDGLIWVVDSADKR------R---LEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        88 -----~~~~~ii~v~d~~~~~------s---~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                           +..++||+.+|+++--      .   ...+..-+.++.+. -....||.++.||.|+..
T Consensus       208 k~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         208 KYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence                 3589999999975511      1   12233334444322 224799999999999854

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.61  E-value=7.1e-05  Score=58.08  Aligned_cols=21  Identities=14%  Similarity=0.230  Sum_probs=20.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -.+++|.+|||||||+|++..
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p  186 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLP  186 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCc
Confidence            789999999999999999997

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=97.60  E-value=0.00014  Score=56.57  Aligned_cols=79  Identities=13%  Similarity=0.101  Sum_probs=51.1

Q ss_pred             HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------Hhhhcc
Q psy11510         83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKV  154 (171)
Q Consensus        83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~  154 (171)
                      ....+..+|++++|+|+..+.+-+.  .++...+     .+.|+++|.||+|+.+....+...++.        ..|+++
T Consensus        18 l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~   90 (287)
T PRK09563         18 IKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKK   90 (287)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence            3455788999999999977654322  1223332     268999999999996431111222222        237899


Q ss_pred             CCCHHHHHHHHHHH
Q psy11510        155 KLNKQSKFQVLLNE  168 (171)
Q Consensus       155 ~~~v~~~f~~l~~~  168 (171)
                      +.|++++.+.+.+.
T Consensus        91 ~~gi~~L~~~l~~~  104 (287)
T PRK09563         91 GQGVKKILKAAKKL  104 (287)
T ss_pred             cccHHHHHHHHHHH
Confidence            99999988877543

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.59  E-value=0.00017  Score=48.82  Aligned_cols=20  Identities=15%  Similarity=0.157  Sum_probs=19.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |++.|++|+|||++++.+..
T Consensus         1 ill~G~~G~GKT~l~~~la~   20 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQ   20 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHh
Confidence            68999999999999999998

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK13796 GTPase YqeH; Provisional

Probab=97.57  E-value=0.00028  Score=56.76  Aligned_cols=82  Identities=16%  Similarity=0.193  Sum_probs=52.0

Q ss_pred             chhHHHHHhhhCCC-EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH-------
Q psy11510         78 SLRSYWRNYFESTD-GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS-------  148 (171)
Q Consensus        78 ~~~~~~~~~~~~~~-~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~-------  148 (171)
                      .|...... +...+ .+++|+|+.+...  .....+.++.     .+.|+++|+||+|+.. ....+++.++.       
T Consensus        58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~~--s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~  129 (365)
T PRK13796         58 DFLKLLNG-IGDSDALVVNVVDIFDFNG--SWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKEL  129 (365)
T ss_pred             HHHHHHHh-hcccCcEEEEEEECccCCC--chhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhc
Confidence            44444444 34455 8899999987431  1111222221     3679999999999965 33344444331       


Q ss_pred             --------HhhhccCCCHHHHHHHHHH
Q psy11510        149 --------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       149 --------~~sa~~~~~v~~~f~~l~~  167 (171)
                              ..||+++.|++++++.+.+
T Consensus       130 g~~~~~v~~vSAk~g~gI~eL~~~I~~  156 (365)
T PRK13796        130 GLRPVDVVLISAQKGHGIDELLEAIEK  156 (365)
T ss_pred             CCCcCcEEEEECCCCCCHHHHHHHHHH
Confidence                    3589999999999999865

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=97.57  E-value=9.4e-05  Score=56.27  Aligned_cols=22  Identities=5%  Similarity=0.114  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.++++|.+|||||||++++..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~  142 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDP  142 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4789999999999999999997

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.55  E-value=0.00099  Score=53.69  Aligned_cols=25  Identities=32%  Similarity=0.337  Sum_probs=21.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.-.++++|+.||||||++.++..
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999876

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.55  E-value=0.00075  Score=52.05  Aligned_cols=24  Identities=25%  Similarity=0.318  Sum_probs=21.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-+++++|+.|+||||++..+..
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~   97 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAW   97 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            446999999999999999988765

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.51  E-value=0.0012  Score=54.09  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=18.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHh
Q psy11510         39 AVVSLLRNKNGGETLILKKKK   59 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~   59 (171)
                      -.++++|+.||||||++-++.
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA  242 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLA  242 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999877664

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.51  E-value=0.00062  Score=51.42  Aligned_cols=24  Identities=17%  Similarity=0.209  Sum_probs=21.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.==|.++|++|||||||++-+.+
T Consensus        28 ~GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          28 KGEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            334588999999999999999998

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.50  E-value=0.0011  Score=48.03  Aligned_cols=91  Identities=15%  Similarity=0.109  Sum_probs=50.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---cccCceEE-----EEE-e---cC-CccchhHHHHHhhhCCCEEEEEEe----
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---IMTFRFKL-----NIW-D---VG-GQKSLRSYWRNYFESTDGLIWVVD----   98 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---~~~~~~~~-----~i~-d---~~-g~~~~~~~~~~~~~~~~~ii~v~d----   98 (171)
                      .+.=.+.++|+.|+|||||++-+.+   .+...+.+     ... .   .+ |+.+--.+...+..+++.+++  |    
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL--DEPts  100 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF--DEPSA  100 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE--ECCcc
Confidence            3555889999999999999999998   12222221     111 1   22 222333355566677776666  4    


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEe
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFAN  131 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n  131 (171)
                      .-|+.+-+.+.+++.++...   .+..++++.+
T Consensus       101 ~LD~~~~~~l~~~l~~~~~~---~~~tiiivsH  130 (177)
T cd03222         101 YLDIEQRLNAARAIRRLSEE---GKKTALVVEH  130 (177)
T ss_pred             cCCHHHHHHHHHHHHHHHHc---CCCEEEEEEC
Confidence            22344455555555555322   1256666543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.50  E-value=0.0028  Score=41.27  Aligned_cols=70  Identities=17%  Similarity=0.152  Sum_probs=46.9

Q ss_pred             EEEEe-CCCCcHHHHHHHHhc-----------ccc-CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHH
Q psy11510         41 VSLLR-NKNGGETLILKKKKM-----------IMT-FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLED  107 (171)
Q Consensus        41 i~liG-~~~~GKttli~~~~~-----------~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~  107 (171)
                      |.+.| ..|+||||+...+..           ++. ....+.++|+|+....  .....+..+|.++++++.+ ..++..
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~~-~~s~~~   78 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLIPVQPS-PLDLDG   78 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccCC-HHHHHH
Confidence            56677 558999999888776           111 1245678899886433  2336677899999999864 445655


Q ss_pred             HHHHHH
Q psy11510        108 CARELH  113 (171)
Q Consensus       108 ~~~~~~  113 (171)
                      ..+++.
T Consensus        79 ~~~~~~   84 (104)
T cd02042          79 LEKLLE   84 (104)
T ss_pred             HHHHHH
Confidence            555444

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.49  E-value=0.00013  Score=56.73  Aligned_cols=22  Identities=9%  Similarity=0.119  Sum_probs=20.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..++++|++|+|||||++.+.+
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~  183 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLP  183 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999998

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.45  E-value=0.00013  Score=48.96  Aligned_cols=21  Identities=14%  Similarity=0.211  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .|++.|++||||||+.+.+..
T Consensus         1 vI~I~G~~gsGKST~a~~La~   21 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAE   21 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999987

...

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.44  E-value=0.00045  Score=41.08  Aligned_cols=21  Identities=14%  Similarity=0.259  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      ..++.|+.|+|||||+..+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

>PRK04195 replication factor C large subunit; Provisional

Probab=97.42  E-value=0.00038  Score=58.02  Aligned_cols=36  Identities=17%  Similarity=-0.019  Sum_probs=27.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEe
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWD   72 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d   72 (171)
                      +.-.+++.|++|+||||+++.+.+ ....-+.++.-|
T Consensus        38 ~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd   74 (482)
T PRK04195         38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD   74 (482)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence            356799999999999999999988 444444444434

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.40  E-value=0.0011  Score=52.22  Aligned_cols=26  Identities=15%  Similarity=0.103  Sum_probs=23.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+++-|+++|-.|+||||-+-++..
T Consensus       136 ~~~p~Vil~vGVNG~GKTTTIaKLA~  161 (340)
T COG0552         136 EKKPFVILFVGVNGVGKTTTIAKLAK  161 (340)
T ss_pred             CCCcEEEEEEecCCCchHhHHHHHHH
Confidence            45689999999999999999888877

>PRK08118 topology modulation protein; Reviewed

Probab=97.39  E-value=0.00014  Score=52.10  Aligned_cols=21  Identities=10%  Similarity=0.234  Sum_probs=20.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      ||+|+|++|||||||.+.+..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~   23 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGE   23 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999997

>KOG0469|consensus

Probab=97.39  E-value=0.00066  Score=56.10  Aligned_cols=109  Identities=19%  Similarity=0.206  Sum_probs=78.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------------------ccc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------------------------------------IMT   63 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------------------------------------~~~   63 (171)
                      .++..++.+|-....|||||...+..                                                   -+.
T Consensus        16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~   95 (842)
T KOG0469|consen   16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG   95 (842)
T ss_pred             ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence            45667788999999999999999887                                                   345


Q ss_pred             CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC---CCC
Q psy11510         64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG---ALT  140 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~---~~~  140 (171)
                      ....++++|.||+-+|.+.-...++=.|+.+.|+|..+.--.+ .+.-+.+.+.+    .+.-+++.||.|..-   ..+
T Consensus        96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQ-TETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~  170 (842)
T KOG0469|consen   96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQ-TETVLRQAIAE----RIKPVLVMNKMDRALLELQLS  170 (842)
T ss_pred             cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEec-hHHHHHHHHHh----hccceEEeehhhHHHHhhcCC
Confidence            5778999999999999998888899999999999976643221 12223343333    344456689999753   566


Q ss_pred             HHHHHHHH
Q psy11510        141 PEDIKNVS  148 (171)
Q Consensus       141 ~~~~~~~~  148 (171)
                      .+++-+..
T Consensus       171 ~EeLyqtf  178 (842)
T KOG0469|consen  171 QEELYQTF  178 (842)
T ss_pred             HHHHHHHH
Confidence            66655443

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.38  E-value=0.0025  Score=51.62  Aligned_cols=23  Identities=22%  Similarity=0.187  Sum_probs=19.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKK   59 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~   59 (171)
                      ....|+++|+.|+||||.+.++.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA  195 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLA  195 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999998775

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.38  E-value=0.0051  Score=42.54  Aligned_cols=90  Identities=17%  Similarity=0.203  Sum_probs=58.9

Q ss_pred             EEEeCCCCcHHHHHHHHhc---------------ccc--CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh
Q psy11510         42 SLLRNKNGGETLILKKKKM---------------IMT--FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR  104 (171)
Q Consensus        42 ~liG~~~~GKttli~~~~~---------------~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s  104 (171)
                      +.-|.+|+||||+...+..               ...  -...+.++|+|+..  .......+..+|.++++.+.+. .+
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~-~s   80 (139)
T cd02038           4 VTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP-TS   80 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-hH
Confidence            3457889999999877776               111  12557888998743  3334567889999999998764 34


Q ss_pred             HHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510        105 LEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus       105 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      +......+..+.+.  ....++.+|.|+++..
T Consensus        81 ~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~~  110 (139)
T cd02038          81 ITDAYALIKKLAKQ--LRVLNFRVVVNRAESP  110 (139)
T ss_pred             HHHHHHHHHHHHHh--cCCCCEEEEEeCCCCH
Confidence            55444444444322  1355777899998743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PRK13796 GTPase YqeH; Provisional

Probab=97.37  E-value=0.0002  Score=57.64  Aligned_cols=24  Identities=13%  Similarity=0.115  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +..++.++|.+|||||||+|++..
T Consensus       159 ~~~~v~vvG~~NvGKSTLiN~L~~  182 (365)
T PRK13796        159 EGRDVYVVGVTNVGKSTLINRIIK  182 (365)
T ss_pred             CCCeEEEEcCCCCcHHHHHHHHHh
Confidence            345899999999999999999973

>PTZ00293 thymidine kinase; Provisional

Probab=97.36  E-value=0.0021  Score=47.66  Aligned_cols=88  Identities=14%  Similarity=0.079  Sum_probs=49.7

Q ss_pred             EEEEeCCCCcHHH-HHHHHhccccCceEEEEE----ecC-----------Ccc-------chhHHHHHhhhCCCEEEEEE
Q psy11510         41 VSLLRNKNGGETL-ILKKKKMIMTFRFKLNIW----DVG-----------GQK-------SLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        41 i~liG~~~~GKtt-li~~~~~~~~~~~~~~i~----d~~-----------g~~-------~~~~~~~~~~~~~~~ii~v~   97 (171)
                      -++.|+.++|||| |++++.+....+.++.++    |+-           |..       ....++.. +++.|++++  
T Consensus         7 ~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~-~~~~dvI~I--   83 (211)
T PTZ00293          7 SVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLET-AKNYDVIAI--   83 (211)
T ss_pred             EEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHh-ccCCCEEEE--
Confidence            3569999999999 999888722211111112    111           100       11112222 355666555  


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                        +..+-|..+.++...+.    ..++||++.|-..|-..
T Consensus        84 --DEaQFf~~i~~~~~~l~----~~g~~VivaGLd~Df~~  117 (211)
T PTZ00293         84 --DEGQFFPDLVEFSEAAA----NLGKIVIVAALDGTFQR  117 (211)
T ss_pred             --EchHhhHhHHHHHHHHH----HCCCeEEEEecCccccc
Confidence              35555555555544443    35899999999988755

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=97.36  E-value=0.00017  Score=57.90  Aligned_cols=23  Identities=17%  Similarity=0.128  Sum_probs=21.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+++++|.+|||||||++++..
T Consensus       154 ~~~v~~vG~~nvGKStliN~l~~  176 (360)
T TIGR03597       154 KKDVYVVGVTNVGKSSLINKLLK  176 (360)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999999975

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.36  E-value=0.00022  Score=55.83  Aligned_cols=23  Identities=17%  Similarity=0.128  Sum_probs=21.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...++++|.+|||||||++.+.+
T Consensus       164 gk~~~~~G~sgvGKStlin~l~~  186 (298)
T PRK00098        164 GKVTVLAGQSGVGKSTLLNALAP  186 (298)
T ss_pred             CceEEEECCCCCCHHHHHHHHhC
Confidence            45789999999999999999987

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.35  E-value=0.0007  Score=50.37  Aligned_cols=40  Identities=8%  Similarity=-0.038  Sum_probs=28.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVG   74 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~   74 (171)
                      ....-.+++.|++|+|||++++.+.. .......+...+..
T Consensus        35 ~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~   75 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA   75 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence            44567899999999999999999987 22223344444543

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.35  E-value=0.0035  Score=51.01  Aligned_cols=23  Identities=9%  Similarity=0.131  Sum_probs=21.1

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+=|-++|+-.+|||||++||..
T Consensus        17 dIYiGVVGPVRTGKSTFIKRFMe   39 (492)
T PF09547_consen   17 DIYIGVVGPVRTGKSTFIKRFME   39 (492)
T ss_pred             ceEEEeecCcccCchhHHHHHHH
Confidence            46688999999999999999998

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PF13173 AAA_14: AAA domain

Probab=97.35  E-value=0.0013  Score=44.87  Aligned_cols=21  Identities=24%  Similarity=0.344  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -+++.|+.+|||||+++++..
T Consensus         4 ~~~l~G~R~vGKTtll~~~~~   24 (128)
T PF13173_consen    4 IIILTGPRGVGKTTLLKQLAK   24 (128)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.34  E-value=0.00019  Score=49.54  Aligned_cols=20  Identities=15%  Similarity=0.230  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |+++|++||||||+++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999985

...

>PRK07261 topology modulation protein; Provisional

Probab=97.34  E-value=0.00018  Score=51.74  Aligned_cols=22  Identities=9%  Similarity=0.280  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+|+++|++|+|||||.+.+..
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~   22 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQ   22 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3799999999999999999876

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.32  E-value=0.00019  Score=52.00  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=20.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .||+++|++||||||+.+++..
T Consensus         1 ~riiilG~pGaGK~T~A~~La~   22 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAK   22 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999998

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.32  E-value=0.0017  Score=50.56  Aligned_cols=98  Identities=11%  Similarity=0.141  Sum_probs=60.2

Q ss_pred             CCCCCceeEEEEEeCCCCcHHHHHHHHhc-----c--ccCceEEEEEecCCccchhH-----------------------
Q psy11510         32 RPQVSNVAVVSLLRNKNGGETLILKKKKM-----I--MTFRFKLNIWDVGGQKSLRS-----------------------   81 (171)
Q Consensus        32 ~~~~~~~~ki~liG~~~~GKttli~~~~~-----~--~~~~~~~~i~d~~g~~~~~~-----------------------   81 (171)
                      .+...+.-.++++|++|.|||+++++|..     .  +...+++.....|.......                       
T Consensus        55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~  134 (302)
T PF05621_consen   55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLE  134 (302)
T ss_pred             CCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHH
Confidence            44455567899999999999999999997     2  22235566666665332111                       


Q ss_pred             -HHHHhhhCCCEEEEEEeCC-C--hhhHH---HHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510         82 -YWRNYFESTDGLIWVVDSA-D--KRRLE---DCARELHELLQEERLAGATLLVFANK  132 (171)
Q Consensus        82 -~~~~~~~~~~~ii~v~d~~-~--~~s~~---~~~~~~~~i~~~~~~~~~p~ivv~nK  132 (171)
                       .....++...+=++++|-- +  ..+..   .+.+.++.+-++   -++|++.||++
T Consensus       135 ~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~Ne---L~ipiV~vGt~  189 (302)
T PF05621_consen  135 QQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNE---LQIPIVGVGTR  189 (302)
T ss_pred             HHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhc---cCCCeEEeccH
Confidence             1123456778888888832 2  11222   233344444222   47999999976

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.31  E-value=0.0015  Score=45.49  Aligned_cols=20  Identities=10%  Similarity=0.237  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      +++.|++|+|||+++..+..
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~   21 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLAL   21 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHH
Confidence            68999999999999999977

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG0057|consensus

Probab=97.29  E-value=0.0019  Score=53.85  Aligned_cols=26  Identities=15%  Similarity=0.266  Sum_probs=23.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      -++.=||.++|.+||||||+++.++.
T Consensus       375 I~kGekVaIvG~nGsGKSTilr~Llr  400 (591)
T KOG0057|consen  375 IPKGEKVAIVGSNGSGKSTILRLLLR  400 (591)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHH
Confidence            34667999999999999999999987

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.27  E-value=0.0023  Score=47.03  Aligned_cols=23  Identities=22%  Similarity=0.173  Sum_probs=20.4

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .=-++++|++|||||||+|-+.+
T Consensus        31 ge~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          31 GELVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             CCEEEEEcCCCccHHHHHHHHhc
Confidence            34578999999999999999988

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.23  E-value=0.00042  Score=51.40  Aligned_cols=26  Identities=19%  Similarity=0.276  Sum_probs=22.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+.=.++++|++|||||||++-+..
T Consensus        25 v~~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          25 VEKGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence            34556789999999999999999998

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=97.23  E-value=0.0029  Score=47.94  Aligned_cols=66  Identities=14%  Similarity=0.061  Sum_probs=40.6

Q ss_pred             CCCCCceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCc--cchhHHHHHhhhCC-CEEEEEEeC
Q psy11510         32 RPQVSNVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQ--KSLRSYWRNYFEST-DGLIWVVDS   99 (171)
Q Consensus        32 ~~~~~~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~--~~~~~~~~~~~~~~-~~ii~v~d~   99 (171)
                      +-...+..++++-|+.|+||||+++.+.+ ....+  +.+++++..  .....+....-... .-||||=|+
T Consensus        46 Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDL  115 (249)
T PF05673_consen   46 FLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDL  115 (249)
T ss_pred             HHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCC
Confidence            33467889999999999999999999998 33334  445554442  23333333333333 444444444

>KOG0054|consensus

Probab=97.18  E-value=0.0013  Score=60.46  Aligned_cols=26  Identities=12%  Similarity=0.176  Sum_probs=23.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++.-.++++|+.|+|||||+..+++
T Consensus       544 i~~G~lvaVvG~vGsGKSSLL~AiLG  569 (1381)
T KOG0054|consen  544 IKKGQLVAVVGPVGSGKSSLLSAILG  569 (1381)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhc
Confidence            45667899999999999999999999

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.18  E-value=0.00084  Score=48.17  Aligned_cols=21  Identities=24%  Similarity=0.173  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      ||++.|++|+||||+++++..
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~   21 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIE   21 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHH
Confidence            689999999999999999887

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.17  E-value=0.00027  Score=50.13  Aligned_cols=21  Identities=10%  Similarity=0.199  Sum_probs=17.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      ||++.|.+|+|||||++.+..
T Consensus         1 rI~i~G~~stGKTTL~~~L~~   21 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAA   21 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999987

>KOG1533|consensus

Probab=97.17  E-value=0.00041  Score=52.05  Aligned_cols=22  Identities=5%  Similarity=-0.028  Sum_probs=18.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      +--++||++|+||||.......
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~~   24 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMSQ   24 (290)
T ss_pred             cceEEEcCCCCCccchhhhHHH
Confidence            4568999999999998776655

>PRK01889 GTPase RsgA; Reviewed

Probab=97.17  E-value=0.0023  Score=51.40  Aligned_cols=76  Identities=13%  Similarity=0.059  Sum_probs=50.6

Q ss_pred             hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHH------HHhhhccCCCH
Q psy11510         87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT--PEDIKNV------SEKATKVKLNK  158 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~------~~~sa~~~~~v  158 (171)
                      ..++|.+++|+++..+-....+..++..+..    .++|.++|+||+|+.+...  .+++...      +..|++++.|+
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl  185 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGL  185 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccH
Confidence            4689999999999754444455555555432    4778899999999976311  1112211      13489999999


Q ss_pred             HHHHHHHH
Q psy11510        159 QSKFQVLL  166 (171)
Q Consensus       159 ~~~f~~l~  166 (171)
                      +++...+.
T Consensus       186 ~~L~~~L~  193 (356)
T PRK01889        186 DVLAAWLS  193 (356)
T ss_pred             HHHHHHhh
Confidence            99887764

>PRK08727 hypothetical protein; Validated

Probab=97.16  E-value=0.0018  Score=48.79  Aligned_cols=20  Identities=15%  Similarity=0.014  Sum_probs=19.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      +++.|++|+|||.|+..+..
T Consensus        44 l~l~G~~G~GKThL~~a~~~   63 (233)
T PRK08727         44 LYLSGPAGTGKTHLALALCA   63 (233)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999877

>KOG0466|consensus

Probab=97.16  E-value=0.00023  Score=55.35  Aligned_cols=128  Identities=13%  Similarity=0.153  Sum_probs=83.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      ..-.++|--+|....||||+++.+.+                                                      
T Consensus        35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~  114 (466)
T KOG0466|consen   35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR  114 (466)
T ss_pred             heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence            45689999999999999999999887                                                      


Q ss_pred             --cccC---ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----hhhHHHHHHHHHHHHhccccCCCeEEEEEe
Q psy11510         61 --IMTF---RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----KRRLEDCARELHELLQEERLAGATLLVFAN  131 (171)
Q Consensus        61 --~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~n  131 (171)
                        ..+.   --.+.+.|.||++......-.-..--|+.++++....    +++-+.+..  -++     +.-+-++++-|
T Consensus       115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--vei-----M~LkhiiilQN  187 (466)
T KOG0466|consen  115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEI-----MKLKHIIILQN  187 (466)
T ss_pred             CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHH-----hhhceEEEEec
Confidence              1111   1236788999987665432222222477777776554    444444322  112     12357888899


Q ss_pred             CCCCCCCC----CHHHHHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        132 KQDIEGAL----TPEDIKNVS-----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       132 K~Dl~~~~----~~~~~~~~~-----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      |.|+..+.    ..+++.++.           ..||.-..|++.+.+.+.+.|
T Consensus       188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            99997632    223344554           348888899999998887764

>KOG0459|consensus

Probab=97.15  E-value=0.00029  Score=56.55  Aligned_cols=101  Identities=19%  Similarity=0.156  Sum_probs=68.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      ++.+++++++|.-.+||||+-.++..                                                  +.-.
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte  155 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE  155 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence            57789999999999999999888876                                                  3344


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh---hHHHH-H-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR---RLEDC-A-RELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~~-~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      .-.+.+.|.||+..|-+-.-.-...+|.-++|+++...+   -|+.- + +....+..-  ..-...+++.||.|-+-
T Consensus       156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt--~gv~~lVv~vNKMddPt  231 (501)
T KOG0459|consen  156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT  231 (501)
T ss_pred             ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHh--hccceEEEEEEeccCCc
Confidence            567899999999888664444456789889998874422   12221 0 001111111  12356888899999876

>KOG2743|consensus

Probab=97.15  E-value=0.0038  Score=48.56  Aligned_cols=65  Identities=17%  Similarity=0.212  Sum_probs=47.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------------
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------------   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------------   60 (171)
                      +.---++.|--|+|||||++.++.                                                        
T Consensus        56 rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~gvra  135 (391)
T KOG2743|consen   56 RIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDNGVRA  135 (391)
T ss_pred             ccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecchHHHH
Confidence            334457889999999999999997                                                        


Q ss_pred             -----cccCceEEEEEecCCccchhHHHHHhhh--------CCCEEEEEEeCCC
Q psy11510         61 -----IMTFRFKLNIWDVGGQKSLRSYWRNYFE--------STDGLIWVVDSAD  101 (171)
Q Consensus        61 -----~~~~~~~~~i~d~~g~~~~~~~~~~~~~--------~~~~ii~v~d~~~  101 (171)
                           -..+++-..+.+|.|...-.++.+.|+.        .-|+++-|+|+..
T Consensus       136 ie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~  189 (391)
T KOG2743|consen  136 IENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKH  189 (391)
T ss_pred             HHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhh
Confidence                 2223444567788887776666666654        3699999999744

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=97.12  E-value=0.0023  Score=53.82  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=23.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      -++.=+++++|++|+|||||++-+.+
T Consensus       358 i~~G~~vaIvG~SGsGKSTLl~lL~g  383 (529)
T TIGR02868       358 LPPGERVAILGPSGSGKSTLLMLLTG  383 (529)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            45667899999999999999999998

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.10  E-value=0.005  Score=47.00  Aligned_cols=26  Identities=12%  Similarity=0.129  Sum_probs=23.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.+.=+++++|++|+|||||++.+.+
T Consensus        13 i~~Gqr~~I~G~~G~GKTTLlr~I~n   38 (249)
T cd01128          13 IGKGQRGLIVAPPKAGKTTLLQSIAN   38 (249)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence            44566899999999999999999998

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.10  E-value=0.0032  Score=48.00  Aligned_cols=24  Identities=17%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-+.++|+.|+|||||++.+++
T Consensus        29 ~G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          29 KGEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC
Confidence            334688999999999999999999

>PRK06217 hypothetical protein; Validated

Probab=97.07  E-value=0.0005  Score=49.82  Aligned_cols=22  Identities=9%  Similarity=0.034  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+|+|+|.+||||||+.+++..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~   23 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAE   23 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999997

>PRK05642 DNA replication initiation factor; Validated

Probab=97.06  E-value=0.0022  Score=48.42  Aligned_cols=93  Identities=15%  Similarity=0.104  Sum_probs=46.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe-CCChhhHHHHHHHHHHHH
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD-SADKRRLEDCARELHELL  116 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d-~~~~~s~~~~~~~~~~i~  116 (171)
                      ..+++.|++|+|||.|++.+.+ ....+..+...+...-..........+.++|.+  ++| +.....-...++.+..++
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~L--iiDDi~~~~~~~~~~~~Lf~l~  123 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELV--CLDDLDVIAGKADWEEALFHLF  123 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEE--EEechhhhcCChHHHHHHHHHH
Confidence            5678999999999999999876 222222333333211000111223345667754  344 221100012223344444


Q ss_pred             hccccCCCeEEEEEeCC
Q psy11510        117 QEERLAGATLLVFANKQ  133 (171)
Q Consensus       117 ~~~~~~~~p~ivv~nK~  133 (171)
                      +.....+.++++.++..
T Consensus       124 n~~~~~g~~ilits~~~  140 (234)
T PRK05642        124 NRLRDSGRRLLLAASKS  140 (234)
T ss_pred             HHHHhcCCEEEEeCCCC
Confidence            44334567888777653

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.05  E-value=0.0025  Score=44.28  Aligned_cols=59  Identities=22%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-cccCceEEE--EEecCCccchh----HHHHHhhhCCCEEEEEEeC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-IMTFRFKLN--IWDVGGQKSLR----SYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-~~~~~~~~~--i~d~~g~~~~~----~~~~~~~~~~~~ii~v~d~   99 (171)
                      .|.++|+.|+|||||++.+.+ ....++.+-  ..+-.|+..+.    ..|.. -..|+.+++..+.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~g~~~~d~pG~Dt~r~-~aGA~~~~~~~~~   67 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDHGQFEIDPPGTDTWRF-KAGADVVLVSSDE   67 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-STTSTTCSTTCHHHHHH-HCT-SEEEEECSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccCCCcccCCCCcccccc-cccceEEEEEcCC
Confidence            478999999999999999998 333333333  22222232211    12333 4456666665543

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=97.05  E-value=0.0059  Score=47.59  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=45.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhccccCceEEEEEecCCccchhHHHHHhhhC--CCEEEEEEeCCChhhHHHHHHHHHHHH
Q psy11510         39 AVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFES--TDGLIWVVDSADKRRLEDCARELHELL  116 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~--~~~ii~v~d~~~~~s~~~~~~~~~~i~  116 (171)
                      -.|++.|.+||||||+++.+-...     +...|......+..+.......  .+.+.+++|+.+...++...+.+..+.
T Consensus         7 ~~i~i~G~~GsGKtt~~~~l~~~g-----~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~   81 (288)
T PRK05416          7 RLVIVTGLSGAGKSVALRALEDLG-----YYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELR   81 (288)
T ss_pred             eEEEEECCCCCcHHHHHHHHHHcC-----CeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHH
Confidence            368999999999999999996321     1223444433333333333322  366788889887654455555555554

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=97.03  E-value=0.0019  Score=47.53  Aligned_cols=37  Identities=16%  Similarity=0.212  Sum_probs=29.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-----cccCceEEEEEecCCc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-----IMTFRFKLNIWDVGGQ   76 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-----~~~~~~~~~i~d~~g~   76 (171)
                      ++++.|.+|+|||++++.+..     .......+.+.|..|.
T Consensus        40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k~~   81 (205)
T PF01580_consen   40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPKGS   81 (205)
T ss_dssp             SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TTSS
T ss_pred             eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCCcc
Confidence            999999999999999999887     3457888999999876

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.02  E-value=0.0073  Score=42.04  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=21.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++-+.+
T Consensus        25 ~Ge~~~i~G~nGsGKStLl~~l~G   48 (144)
T cd03221          25 PGDRIGLVGRNGAGKSTLLKLIAG   48 (144)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcC
Confidence            455788999999999999999998

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>KOG3859|consensus

Probab=97.01  E-value=0.002  Score=49.59  Aligned_cols=41  Identities=17%  Similarity=0.176  Sum_probs=34.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------cc--cCceEEEEEecCC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------IM--TFRFKLNIWDVGG   75 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------~~--~~~~~~~i~d~~g   75 (171)
                      ..-.++|+-+|..|.|||||+..+.+                       ..  +-..++.+.||.|
T Consensus        39 ~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   39 QGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             cCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            45679999999999999999999999                       22  3356788999999

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.01  E-value=0.00072  Score=46.29  Aligned_cols=24  Identities=17%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++.+.+
T Consensus        10 ~g~~~~i~G~nGsGKStLl~~l~g   33 (137)
T PF00005_consen   10 PGEIVAIVGPNGSGKSTLLKALAG   33 (137)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCEEEEEccCCCccccceeeecc
Confidence            345789999999999999999998

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.98  E-value=0.00069  Score=45.55  Aligned_cols=20  Identities=20%  Similarity=0.207  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |+|.|.+||||||+.+.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~   20 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAE   20 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999987

...

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.98  E-value=0.00074  Score=45.37  Aligned_cols=22  Identities=14%  Similarity=0.244  Sum_probs=20.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.++++|++|+||||+++.+..
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~   24 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALAR   24 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            4789999999999999999998

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.98  E-value=0.0048  Score=46.57  Aligned_cols=22  Identities=14%  Similarity=0.241  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.+++.|++|+|||+|++.+.+
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~   67 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACA   67 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999887

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.98  E-value=0.00082  Score=53.28  Aligned_cols=21  Identities=24%  Similarity=0.275  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -++++|++||||||+++-+.+
T Consensus        31 f~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999999

>PLN03025 replication factor C subunit; Provisional

Probab=96.97  E-value=0.0077  Score=47.51  Aligned_cols=94  Identities=15%  Similarity=0.132  Sum_probs=48.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-cccC-----ceEEEEEecCCccchhHHHHHhhh------CCCEEEEEEeCCChhhHH
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-IMTF-----RFKLNIWDVGGQKSLRSYWRNYFE------STDGLIWVVDSADKRRLE  106 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-~~~~-----~~~~~i~d~~g~~~~~~~~~~~~~------~~~~ii~v~d~~~~~s~~  106 (171)
                      -++++.|++|+||||+++.+.. ....     -+.++--|..|.+..+.....+.+      ....-++++|-.+.-+- 
T Consensus        35 ~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~-  113 (319)
T PLN03025         35 PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS-  113 (319)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH-
Confidence            4589999999999999999887 2111     223333444454444433333221      12233445553332221 


Q ss_pred             HHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510        107 DCARELHELLQEERLAGATLLVFANKQD  134 (171)
Q Consensus       107 ~~~~~~~~i~~~~~~~~~p~ivv~nK~D  134 (171)
                      ..+..+...++.. .....++++.|...
T Consensus       114 ~aq~aL~~~lE~~-~~~t~~il~~n~~~  140 (319)
T PLN03025        114 GAQQALRRTMEIY-SNTTRFALACNTSS  140 (319)
T ss_pred             HHHHHHHHHHhcc-cCCceEEEEeCCcc
Confidence            2233344444432 23466777777653

>KOG0781|consensus

Probab=96.96  E-value=0.0037  Score=51.42  Aligned_cols=104  Identities=13%  Similarity=0.131  Sum_probs=69.5

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKM----------------------------------------------------   60 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~----------------------------------------------------   60 (171)
                      +..+++|-|.++|-.||||||-+-++..                                                    
T Consensus       373 r~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekGYgkd~a  452 (587)
T KOG0781|consen  373 RRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKGYGKDAA  452 (587)
T ss_pred             HhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhhcCCChH
Confidence            3356899999999999999999999887                                                    


Q ss_pred             ---------cccCceEEEEEecCCccchhH-H---HHHhh--hCCCEEEEEEeC-CChhhHHHHHHHHHHHHhccccCCC
Q psy11510         61 ---------IMTFRFKLNIWDVGGQKSLRS-Y---WRNYF--ESTDGLIWVVDS-ADKRRLEDCARELHELLQEERLAGA  124 (171)
Q Consensus        61 ---------~~~~~~~~~i~d~~g~~~~~~-~---~~~~~--~~~~~ii~v~d~-~~~~s~~~~~~~~~~i~~~~~~~~~  124 (171)
                               -...+.-+.+.||+|...... +   ...+.  ...|.|++|-.+ ...++.+.+..+=..+. ....+..
T Consensus       453 ~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn~al~-~~~~~r~  531 (587)
T KOG0781|consen  453 GVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALA-DHSTPRL  531 (587)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHHHHHh-cCCCccc
Confidence                     233456678999999543222 1   22222  368999999764 34556777766544553 3333333


Q ss_pred             eEEEEEeCCCCCC
Q psy11510        125 TLLVFANKQDIEG  137 (171)
Q Consensus       125 p~ivv~nK~Dl~~  137 (171)
                      ---++++|+|-.+
T Consensus       532 id~~~ltk~dtv~  544 (587)
T KOG0781|consen  532 IDGILLTKFDTVD  544 (587)
T ss_pred             cceEEEEeccchh
Confidence            4445688988654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.96  E-value=0.00081  Score=40.84  Aligned_cols=20  Identities=15%  Similarity=0.298  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |.+.|++|+||||+.+.+..
T Consensus         2 i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68899999999999999987

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=96.95  E-value=0.011  Score=47.70  Aligned_cols=24  Identities=21%  Similarity=0.080  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-.+++.|++|+|||++++.+..
T Consensus        54 ~~~~~lI~G~~GtGKT~l~~~v~~   77 (394)
T PRK00411         54 RPLNVLIYGPPGTGKTTTVKKVFE   77 (394)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999987

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.95  E-value=0.013  Score=41.64  Aligned_cols=25  Identities=20%  Similarity=0.243  Sum_probs=22.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.=.++++|+.|+|||||++-+.+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G   48 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSG   48 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3556789999999999999999998

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.94  E-value=0.00076  Score=48.98  Aligned_cols=21  Identities=14%  Similarity=0.298  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .++++|++|+||||+++.+..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~   24 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQ   24 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999999987

>PRK06893 DNA replication initiation factor; Validated

Probab=96.94  E-value=0.0031  Score=47.39  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      --+++.|++|+|||.|++.+.+
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~   61 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSN   61 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3579999999999999999987

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=96.94  E-value=0.02  Score=37.67  Aligned_cols=84  Identities=14%  Similarity=0.101  Sum_probs=52.3

Q ss_pred             eCCCCcHHHHHHHHhc---cc-c-----------CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHH
Q psy11510         45 RNKNGGETLILKKKKM---IM-T-----------FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCA  109 (171)
Q Consensus        45 G~~~~GKttli~~~~~---~~-~-----------~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~  109 (171)
                      +..|+||||+...+..   .. +           ....+.+.|+|+....  .....+..+|.++++++.+. .++..+.
T Consensus         7 ~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~-~s~~~~~   83 (106)
T cd03111           7 AKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL-PSIRNAK   83 (106)
T ss_pred             CCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh-HHHHHHH
Confidence            4577999998887766   00 1           1124578899986533  23456788999999987544 4555555


Q ss_pred             HHHHHHHhccccC-CCeEEEEEeC
Q psy11510        110 RELHELLQEERLA-GATLLVFANK  132 (171)
Q Consensus       110 ~~~~~i~~~~~~~-~~p~ivv~nK  132 (171)
                      ..+..+.+. ..+ ...+.+|+|+
T Consensus        84 ~~~~~l~~~-~~~~~~~~~lVvNr  106 (106)
T cd03111          84 RLLELLRVL-DYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHc-CCCCcCceEEEecC
Confidence            555554332 223 4466677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>TIGR00235 udk uridine kinase

Probab=96.90  E-value=0.001  Score=49.20  Aligned_cols=26  Identities=12%  Similarity=0.147  Sum_probs=22.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +++..-|.++|++|||||||++.+..
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            34567799999999999999999987

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.89  E-value=0.00084  Score=46.44  Aligned_cols=20  Identities=20%  Similarity=0.232  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |+++|++|+||||+++.+..
T Consensus         2 i~i~GpsGsGKstl~~~L~~   21 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLE   21 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            68999999999999999988

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK03839 putative kinase; Provisional

Probab=96.89  E-value=0.00086  Score=48.32  Aligned_cols=21  Identities=14%  Similarity=0.183  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      +|+++|.+||||||+.+++..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~   22 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAE   22 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999987

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=96.89  E-value=0.047  Score=38.80  Aligned_cols=90  Identities=12%  Similarity=-0.030  Sum_probs=56.0

Q ss_pred             EEeCCCCcHHHHHHHHhc------------------------ccc---------Cce--EEEEEecCCccchhHHHHHhh
Q psy11510         43 LLRNKNGGETLILKKKKM------------------------IMT---------FRF--KLNIWDVGGQKSLRSYWRNYF   87 (171)
Q Consensus        43 liG~~~~GKttli~~~~~------------------------~~~---------~~~--~~~i~d~~g~~~~~~~~~~~~   87 (171)
                      .-+.+|+||||+.-.+..                        ...         +-+  .+.++|+|+....  .....+
T Consensus         5 ~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~--~~~~~l   82 (179)
T cd02036           5 TSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER--GFITAI   82 (179)
T ss_pred             eeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--HHHHHH
Confidence            345788999999887776                        000         001  4778899885433  234446


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      ..+|.++++++.+.. ++......+..+. ..  ......+|.|+.|....
T Consensus        83 ~~ad~viiv~~~~~~-s~~~~~~~~~~~~-~~--~~~~~~iv~N~~~~~~~  129 (179)
T cd02036          83 APADEALLVTTPEIS-SLRDADRVKGLLE-AL--GIKVVGVIVNRVRPDMV  129 (179)
T ss_pred             HhCCcEEEEeCCCcc-hHHHHHHHHHHHH-Hc--CCceEEEEEeCCccccc
Confidence            789999999986543 4544444444442 21  23457788999987653

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.89  E-value=0.004  Score=44.84  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-+.++|.+|||||||++++..
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~   28 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIP   28 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHH
Confidence            34689999999999999999997

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.89  E-value=0.0092  Score=43.93  Aligned_cols=69  Identities=13%  Similarity=0.038  Sum_probs=39.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC--ccchhHHHHHhhhCCCEEEEEEeCCChhhH
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG--QKSLRSYWRNYFESTDGLIWVVDSADKRRL  105 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g--~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~  105 (171)
                      +.--+.+.|++|+|||+|..++.. ....+..+.++|+-+  .+++..+...+......=+++++..+....
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~   82 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQ   82 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHH
Confidence            344578999999999999999886 222345566778765  222222222222222223556676554443

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=96.88  E-value=0.0008  Score=50.41  Aligned_cols=26  Identities=12%  Similarity=0.146  Sum_probs=22.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhccc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKMIM   62 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~~~   62 (171)
                      +.=-++++|++|||||||++-+-.++
T Consensus        30 ~Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          30 AGEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccc
Confidence            44468999999999999999999833

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.88  E-value=0.001  Score=49.18  Aligned_cols=26  Identities=12%  Similarity=0.164  Sum_probs=22.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.+..-|+++|++|||||||++.+..
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~   35 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRE   35 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHh
Confidence            44667788999999999999999975

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.86  E-value=0.00086  Score=48.23  Aligned_cols=21  Identities=10%  Similarity=0.303  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .++++|++||||||+++.+..
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~   23 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARA   23 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            479999999999999999876

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG0066|consensus

Probab=96.86  E-value=0.014  Score=47.93  Aligned_cols=40  Identities=20%  Similarity=0.213  Sum_probs=29.9

Q ss_pred             eccceeeeccceecccccccCCCCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         12 VGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        12 ~~~~~~~~~~~~~~m~~~~~~~~~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.++.++..-..|+..         -.-+|+++|+.|||||||+.-+++
T Consensus       596 y~gqkpLFkkldFGiD---------mdSRiaIVGPNGVGKSTlLkLL~G  635 (807)
T KOG0066|consen  596 YPGQKPLFKKLDFGID---------MDSRIAIVGPNGVGKSTLLKLLIG  635 (807)
T ss_pred             CCCCCchhhccccccc---------ccceeEEECCCCccHHHHHHHHhc
Confidence            3455555555555533         345799999999999999999998

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.84  E-value=0.019  Score=40.36  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=21.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++|+.|+|||||++.+.+
T Consensus        24 ~g~~~~i~G~nGsGKStll~~l~g   47 (157)
T cd00267          24 AGEIVALVGPNGSGKSTLLRAIAG   47 (157)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456789999999999999999998

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.83  E-value=0.001  Score=47.84  Aligned_cols=21  Identities=10%  Similarity=0.147  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -|+++|++||||||+++.+..
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~   23 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLE   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999999987

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK08116 hypothetical protein; Validated

Probab=96.83  E-value=0.0062  Score=46.97  Aligned_cols=93  Identities=10%  Similarity=0.093  Sum_probs=51.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCc-cchh-----------HHHHHhhhCCCEEEEEEeCCChh-h
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQ-KSLR-----------SYWRNYFESTDGLIWVVDSADKR-R  104 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~-~~~~-----------~~~~~~~~~~~~ii~v~d~~~~~-s  104 (171)
                      .-+++.|++|+|||.|+..+.+ .......+.+++.+.- ..+.           ......+.++|  ++|+|--..+ .
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d--lLviDDlg~e~~  192 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD--LLILDDLGAERD  192 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC--EEEEecccCCCC
Confidence            4599999999999999999988 2222455555554320 0000           01112245666  3444522111 1


Q ss_pred             HHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510        105 LEDCARELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus       105 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                      -+.....+..+++.....+.|+|+-.|..
T Consensus       193 t~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        193 TEWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            12233445556555444678999987754

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=96.82  E-value=0.0079  Score=46.82  Aligned_cols=20  Identities=5%  Similarity=0.091  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |+++|++|+|||+|...+..
T Consensus         2 i~i~G~t~~GKs~la~~l~~   21 (287)
T TIGR00174         2 IFIMGPTAVGKSQLAIQLAK   21 (287)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999987

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK12377 putative replication protein; Provisional

Probab=96.82  E-value=0.0047  Score=47.12  Aligned_cols=93  Identities=10%  Similarity=0.064  Sum_probs=51.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCcc-chh---------HHHHHhhhCCCEEEEEEeCCChhhH-
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQK-SLR---------SYWRNYFESTDGLIWVVDSADKRRL-  105 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~~-~~~---------~~~~~~~~~~~~ii~v~d~~~~~s~-  105 (171)
                      ...+++.|++|+|||.|+..+.+ ....+..+.+...+.-- ...         ......+.++|.  +|+|--..... 
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dL--LiIDDlg~~~~s  178 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDL--LVLDEIGIQRET  178 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCE--EEEcCCCCCCCC
Confidence            35799999999999999999998 33334444444433200 000         001112334444  44453211111 


Q ss_pred             HHHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510        106 EDCARELHELLQEERLAGATLLVFANK  132 (171)
Q Consensus       106 ~~~~~~~~~i~~~~~~~~~p~ivv~nK  132 (171)
                      +.-...+..+++.......|.++.-|-
T Consensus       179 ~~~~~~l~~ii~~R~~~~~ptiitSNl  205 (248)
T PRK12377        179 KNEQVVLNQIIDRRTASMRSVGMLTNL  205 (248)
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            223455667766655567899988664

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.82  E-value=0.009  Score=42.95  Aligned_cols=20  Identities=15%  Similarity=0.011  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      +++.|++|+|||+|..++..
T Consensus         2 ~li~G~~G~GKT~l~~~~~~   21 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLY   21 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999999876

A related protein is found in archaea.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.82  E-value=0.001  Score=50.03  Aligned_cols=22  Identities=14%  Similarity=0.359  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      =-|+++|++|+|||||++.+.+
T Consensus        31 E~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          31 EMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             cEEEEECCCCCcHHHHHHHHhc
Confidence            3589999999999999999998

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.81  E-value=0.00088  Score=49.75  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=20.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--.+++|++|||||||++.+..
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNR   55 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNR   55 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHh
Confidence            334468999999999999999987

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=96.81  E-value=0.0066  Score=51.77  Aligned_cols=26  Identities=15%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      -++.=+++++|++|+|||||++-+.+
T Consensus       373 i~~G~~vaIvG~SGsGKSTL~~lL~g  398 (588)
T PRK11174        373 LPAGQRIALVGPSGAGKTSLLNALLG  398 (588)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            35677899999999999999999987

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=96.80  E-value=0.0066  Score=51.67  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=22.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.=+++++|++|+|||||++-+.+
T Consensus       367 ~~G~~~aIvG~sGsGKSTLl~ll~g  391 (582)
T PRK11176        367 PAGKTVALVGRSGSGKSTIANLLTR  391 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHh
Confidence            4566899999999999999999998

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.79  E-value=0.0013  Score=45.15  Aligned_cols=21  Identities=19%  Similarity=0.215  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .|+++|++|+|||++++.+..
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~   21 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAA   21 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999999998

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.79  E-value=0.0014  Score=48.47  Aligned_cols=25  Identities=8%  Similarity=0.158  Sum_probs=23.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+...|.+.|++|||||||.+.+..
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~   28 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYE   28 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999987

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=96.78  E-value=0.0022  Score=46.58  Aligned_cols=41  Identities=15%  Similarity=0.099  Sum_probs=29.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---cccCceEEEEEecCCc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---IMTFRFKLNIWDVGGQ   76 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---~~~~~~~~~i~d~~g~   76 (171)
                      ...=.++++|++|+|||||++-+.+   .....+.++=-|..+.
T Consensus        23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~   66 (231)
T COG3840          23 PAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS   66 (231)
T ss_pred             cCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC
Confidence            3455789999999999999999998   3333444444454443

>PRK14530 adenylate kinase; Provisional

Probab=96.77  E-value=0.0012  Score=49.08  Aligned_cols=21  Identities=14%  Similarity=0.063  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      +|+++|++||||||+.+.+..
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999976

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=96.77  E-value=0.0013  Score=49.79  Aligned_cols=26  Identities=12%  Similarity=0.238  Sum_probs=23.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      -+..++++++|.+|||||+++..++.
T Consensus        10 ~~~~fr~viIG~sGSGKT~li~~lL~   35 (241)
T PF04665_consen   10 LKDPFRMVIIGKSGSGKTTLIKSLLY   35 (241)
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHH
Confidence            35678999999999999999999887

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14532 adenylate kinase; Provisional

Probab=96.76  E-value=0.0013  Score=47.78  Aligned_cols=22  Identities=14%  Similarity=0.051  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++|+++|++||||||+.+++..
T Consensus         1 ~~i~~~G~pGsGKsT~a~~la~   22 (188)
T PRK14532          1 MNLILFGPPAAGKGTQAKRLVE   22 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		6e-29
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-28
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		3e-28
1ksj_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		1e-27
4gok_B	169	The Crystal Structure Of Arl2gppnhp In Complex With		4e-27
1fzq_A	181	Crystal Structure Of Murine Arl3-Gdp Length = 181		3e-17
4goj_A	189	The Crystal Structure Of Full Length Arl3gppnhp In		3e-17
3bh7_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-17
3bh6_A	164	Crystal Structure Of The Rp2-Arl3 Complex Bound To		4e-16
1r4a_A	165	Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac		1e-15
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		3e-15
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		5e-15
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		5e-15
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		5e-15
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		5e-15
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		6e-15
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		2e-14
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		2e-14
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		4e-14
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		4e-14
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		4e-14
2b6h_A	192	Structure Of Human Adp-Ribosylation Factor 5 Length		5e-14
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		1e-13
1hur_A	180	Human Adp-Ribosylation Factor 1 Complexed With Gdp,		1e-13
4dcn_A	166	Crystal Structure Analysis Of The Arfaptin2 Bar Dom		1e-13
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		1e-13
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		2e-13
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		3e-13
3aq4_A	184	Molecular Insights Into Plant Cell Proliferation Di		4e-13
1j2j_A	166	Crystal Structure Of Gga1 Gat N-terminal Region In		1e-12
1upt_A	171	Structure Of A Complex Of The Golgin-245 Grip Domai		2e-12
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		3e-12
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		3e-12
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		3e-12
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		4e-12
1yzg_A	179	Structure Of Human Adp-ribosylation Factor-like 8 L		6e-12
2x77_A	189	Crystal Structure Of Leishmania Major Adp Ribosylat		2e-11
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		2e-11
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		7e-11
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		7e-11
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		7e-11
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		8e-11
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-09
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-08
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-08
4bas_A	199	Structure Of The Arl6 Bbs3 Small Gtpase From Trypan		9e-07
2gao_A	208	Crystal Structure Of Human Sar1a In Complex With Gd		1e-06
2fmx_A	195	An Open Conformation Of Switch I Revealed By Sar1-g		2e-06
1f6b_A	198	Crystal Structure Of Sar1-Gdp Complex Length = 198		3e-06
2fa9_A	189	The Crystal Structure Of Sar1[h79g]-gdp Provides In		6e-06
2qtv_B	167	Structure Of Sec23-Sar1 Complexed With The Active F		2e-05
1m2o_B	190	Crystal Structure Of The Sec23-Sar1 Complex Length		3e-05

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 65/84 (77%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
           FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC             AGAT
Sbjct: 60  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119
Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LL+FANKQD+ GAL+   I+ V E
Sbjct: 120 LLIFANKQDLPGALSSNAIREVLE 143

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 64/84 (76%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
           FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC             AGAT
Sbjct: 62  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LL+FANKQD+ GAL+   I+   E
Sbjct: 122 LLIFANKQDLPGALSXNAIQEALE 145

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 64/84 (76%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
           FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD++R++DC             AGAT
Sbjct: 62  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 121
Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LL+FANKQD+ GAL+   I+   E
Sbjct: 122 LLIFANKQDLPGALSCNAIQEALE 145

>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/118 (54%), Positives = 73/118 (61%), Gaps = 16/118 (13%)
Query: 48  NGGETLILKK----------------KKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T ILKK                 K +    FKLNIWDVGGQKSLRSYWRNYFESTD
Sbjct: 28  NAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTD 87
Query: 92  GLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVFANKQDIEGALTPEDIKNVSE 149
           GLIWVVDSAD++R +DC             AGATLL+FANKQD+ GAL+   I+   E
Sbjct: 88  GLIWVVDSADRQRXQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSXNAIQEALE 145

>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169

Iteration: 1
 Score =  117 bits (293), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 63/84 (75%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
           FKLNIWDVGG KSLRSYWRNYFESTDGLIWVVDSAD++R++DC             AGAT
Sbjct: 45  FKLNIWDVGGLKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 104
Query: 126 LLVFANKQDIEGALTPEDIKNVSE 149
           LL+FANKQD+ GAL+   I+   E
Sbjct: 105 LLIFANKQDLPGALSCNAIQEALE 128

>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 55/86 (63%)
Query: 59  KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXX 118
           K + +  FKLN+WD+GGQ+ +R YWR+YFE+TD LI+V+DSAD++R E+           
Sbjct: 53  KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 112
Query: 119 XXXAGATLLVFANKQDIEGALTPEDI 144
              +   +L+FANKQD+  A    +I
Sbjct: 113 EKLSCVPVLIFANKQDLLTAAPASEI 138

>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 55/86 (63%)
Query: 59  KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXX 118
           K + +  FKLN+WD+GGQ+ +R YWR+YFE+TD LI+V+DSAD++R E+           
Sbjct: 54  KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 113
Query: 119 XXXAGATLLVFANKQDIEGALTPEDI 144
              +   +L+FANKQD+  A    +I
Sbjct: 114 EKLSCVPVLIFANKQDLLTAAPASEI 139

>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164

Iteration: 1
 Score = 84.0 bits (206), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 55/86 (63%)
Query: 59  KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXX 118
           K + +  FKLN+WD+GGQ+ +R YWR+YFE+TD LI+V+DSAD++R E+           
Sbjct: 41  KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 100
Query: 119 XXXAGATLLVFANKQDIEGALTPEDI 144
              +   +L+FANKQD+  A    +I
Sbjct: 101 EKLSCVPVLIFANKQDLLTAAPASEI 126

>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 59  KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXX 118
           K + +  FKLN+WD+GG + +R YWR+YFE+TD LI+V+DSAD++R E+           
Sbjct: 41  KSVQSQGFKLNVWDIGGLRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEE 100
Query: 119 XXXAGATLLVFANKQDIEGALTPEDI 144
              +   +L+FANKQD+  A    +I
Sbjct: 101 EKLSCVPVLIFANKQDLLTAAPASEI 126

>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165

Iteration: 1
 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 49/81 (60%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
            K  +WD+GGQ S+R YWR Y+ +TD +I+VVDS D+ R+                  A 
Sbjct: 46  LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 105
Query: 126 LLVFANKQDIEGALTPEDIKN 146
           L+VFANKQD+E A+TP ++ N
Sbjct: 106 LVVFANKQDMEQAMTPSEMAN 126

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 47/79 (59%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
            KLN+WD+GGQ S+R YWR Y+  T  +I+VVDS DK R+   +              A 
Sbjct: 62  LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA 121
Query: 126 LLVFANKQDIEGALTPEDI 144
           LLVFANKQD  GAL+  ++
Sbjct: 122 LLVFANKQDQPGALSASEV 140

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
           K N+WDVGGQ  +R  WR+Y+  T GLI+VVD AD+ R+++                A +
Sbjct: 58  KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
Query: 127 LVFANKQDIEGALTPEDIK 145
           L+FANKQD+  A+ P +I+
Sbjct: 118 LIFANKQDLPDAMKPHEIQ 136

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
           K N+WDVGGQ  +R  WR+Y+  T GLI+VVD AD+ R+++                A +
Sbjct: 57  KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 116
Query: 127 LVFANKQDIEGALTPEDIK 145
           L+FANKQD+  A+ P +I+
Sbjct: 117 LIFANKQDLPDAMKPHEIQ 135

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 77.0 bits (188), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 16/113 (14%)
Query: 49  GGETLILKKKKM------IMTFRF----------KLNIWDVGGQKSLRSYWRNYFESTDG 92
            G+T IL K K+      I T  F          K N+WDVGGQ  +R  WR+Y+  T G
Sbjct: 333 AGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 392
Query: 93  LIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVFANKQDIEGALTPEDIK 145
           LI+VVD AD+ R+++                A +L+FANKQD+  A+ P +I+
Sbjct: 393 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQ 445

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
           K N+WDVGGQ  +R  WR+Y+  T GLI+VVD AD+ R+++                A +
Sbjct: 45  KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
Query: 127 LVFANKQDIEGALTPEDIK 145
           L+FANKQD+  A+ P +I+
Sbjct: 105 LIFANKQDLPDAMKPHEIQ 123

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 76.6 bits (187), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
           K N+WDVGGQ  +R  WR+Y+  T GLI+VVD AD+ R+++                A +
Sbjct: 45  KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 104
Query: 127 LVFANKQDIEGALTPEDIK 145
           L+FANKQD+  A+ P +I+
Sbjct: 105 LIFANKQDLPDAMKPHEIQ 123

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
           K N+WDVGGQ  +R  WR+Y+  T GLI+VVD AD+ R+++                A +
Sbjct: 45  KFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREXRDAII 104
Query: 127 LVFANKQDIEGALTPEDIK 145
           L+FANKQD+  A  P +I+
Sbjct: 105 LIFANKQDLPDAXKPHEIQ 123

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 59/112 (52%), Gaps = 16/112 (14%)
Query: 49  GGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTDG 92
            G+T IL K K+             + T  F+     +WDVGGQ  +R  WR+Y+ +TDG
Sbjct: 28  AGKTTILYKVKLGEVVTTIPTIGFNVETVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDG 87
Query: 93  LIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVFANKQDIEGALTPEDI 144
           LI+VVDS D+ R++D                A +LVFANKQD+  A++  ++
Sbjct: 88  LIFVVDSNDRERIDDAREELHRMINEEELKDAIILVFANKQDLPNAMSAAEV 139

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
           K N+WDVGG   +R  WR+Y+  T GLI+VVD AD+ R+++                A +
Sbjct: 58  KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 117
Query: 127 LVFANKQDIEGALTPEDIK 145
           L+FANKQD+  A+ P +I+
Sbjct: 118 LIFANKQDLPDAMKPHEIQ 136

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
           K N+WDVGG   +R  WR+Y+  T GLI+VVD AD+ R+++                A +
Sbjct: 47  KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 106
Query: 127 LVFANKQDIEGALTPEDIK 145
           L+FANKQD+  A+ P +I+
Sbjct: 107 LIFANKQDLPDAMKPHEIQ 125

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
           K N+WDVGG   +R  WR+Y+  T GLI+VVD AD+ R+++                A +
Sbjct: 48  KFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII 107
Query: 127 LVFANKQDIEGALTPEDIK 145
           L+FANKQD+  A+ P +I+
Sbjct: 108 LIFANKQDLPDAMKPHEIQ 126

>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
             +WDVGGQ  +R  WR+YF++T GLI+VVDS D+ R+++ A              A LL
Sbjct: 75  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLL 134
Query: 128 VFANKQDIEGALTPEDIKN 146
           VFANKQD+  A+   ++ +
Sbjct: 135 VFANKQDMPNAMPVSELTD 153

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
             +WDVGGQ  +R  WR+YF++T GLI+VVDS D+ R+ +                A LL
Sbjct: 63  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 122
Query: 128 VFANKQDIEGALTPEDIKN 146
           VFANKQD+  A+   +I +
Sbjct: 123 VFANKQDLPNAMNAAEITD 141

>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
             +WDVGGQ  +R  WR+YF++T GLI+VVDS D+ R+ +                A LL
Sbjct: 62  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 121
Query: 128 VFANKQDIEGALTPEDIKN 146
           VFANKQD+  A+   +I +
Sbjct: 122 VFANKQDLPNAMNAAEITD 140

>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
            K  +WD+GG  S+R YWR Y+ +TD +I+VVDS D+ R+                  A 
Sbjct: 48  LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI 107
Query: 126 LLVFANKQDIEGALTPEDIKN 146
           L+VFANKQD+E A+T  ++ N
Sbjct: 108 LVVFANKQDMEQAMTSSEMAN 128

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 46/81 (56%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
               +WDVGGQ  +R  WR+YF++T GLI+VVDS D+ R+ +                A 
Sbjct: 44  ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 103
Query: 126 LLVFANKQDIEGALTPEDIKN 146
           LLVFANKQD+  A+   +I +
Sbjct: 104 LLVFANKQDLPNAMNAAEITD 124

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
             +WDVGGQ  +R  WR+YF++T GLI+VVDS D+ R+ +                A LL
Sbjct: 211 FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLL 270
Query: 128 VFANKQDIEGALTPEDIKN 146
           VFANKQD+  A+   +I +
Sbjct: 271 VFANKQDLPNAMNAAEITD 289

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
             +WDVGGQ  +R  W++YF++T GLI+VVDS D+ R+++ A              A LL
Sbjct: 63  FTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLL 122
Query: 128 VFANKQDIEGALTPEDIKN 146
           +FANKQD+  A+   ++ +
Sbjct: 123 LFANKQDLPNAMAISEMTD 141

>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
             +WDVGGQ  +R  WR+YF++T GLI+VVDS D+ R+ +                A LL
Sbjct: 66  FTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLL 125
Query: 128 VFANKQDIEGALTPEDIKN 146
           VFANKQD+  A+   +I +
Sbjct: 126 VFANKQDLPNAMNAAEITD 144

>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 45/81 (55%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
               +WDVGG   +R  WR+YF++T GLI+VVDS D+ R+ +                A 
Sbjct: 46  ISFTVWDVGGLDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV 105
Query: 126 LLVFANKQDIEGALTPEDIKN 146
           LLVFANKQD+  A+   +I +
Sbjct: 106 LLVFANKQDLPNAMNAAEITD 126

>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 45/81 (55%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
            K  +WD+GG  S+R YWR Y+ +TD +I+VVDS D+ R+                  A 
Sbjct: 51  LKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAXLEEEELRKAI 110
Query: 126 LLVFANKQDIEGALTPEDIKN 146
           L+VFANKQD E A T  +  N
Sbjct: 111 LVVFANKQDXEQAXTSSEXAN 131

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 46/77 (59%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
             +WDVGGQ  +RS WR+Y+ +T+G+I+VVDS D+ R+ +                A  L
Sbjct: 63  FTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWL 122
Query: 128 VFANKQDIEGALTPEDI 144
           VFANKQD+  A++  +I
Sbjct: 123 VFANKQDLPEAMSAAEI 139

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
               +WDVGGQ  +RS WR+Y+ +T+G+I+VVDS D+ R+ +                A 
Sbjct: 44  ISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAA 103
Query: 126 LLVFANKQDIEGALTPEDI 144
            LVFANKQD+  A++  +I
Sbjct: 104 WLVFANKQDLPEAMSAAEI 122

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 46/77 (59%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
             +WDVGGQ  +RS WR+Y+ +T+G+I+V+DS D+ R+ +                A  L
Sbjct: 63  FTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWL 122
Query: 128 VFANKQDIEGALTPEDI 144
           VFANKQD+  A++  +I
Sbjct: 123 VFANKQDLPEAMSAAEI 139

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
               +WDVGGQ  +RS WR+Y+ +T+G+I+VVDS D+ R+ +                A 
Sbjct: 61  ISFTVWDVGGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAA 120
Query: 126 LLVFANKQDIEGALTPEDI 144
            LVFANKQD+  A++  +I
Sbjct: 121 WLVFANKQDLPEAMSAAEI 139

>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/75 (41%), Positives = 45/75 (60%)
Query: 70  IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVF 129
           +WD+GGQ+SLRS W  Y+ +T+ +I VVDS D+ RL                  A +L+F
Sbjct: 64  MWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAITKEELYRMLAHEDLRKAAVLIF 123
Query: 130 ANKQDIEGALTPEDI 144
           ANKQD++G +T  +I
Sbjct: 124 ANKQDMKGCMTAAEI 138

>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 63  TFRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXX 119
           T ++K     +WD+GGQ  +R YWR YF  TD +I+VVDS D+ R+              
Sbjct: 60  TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDED 119
Query: 120 XXAGATLLVFANKQDIEGALTPEDI 144
               + LL+FANKQD+  A +  +I
Sbjct: 120 ELRKSLLLIFANKQDLPDAASEAEI 144

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGAT 125
               +WDVGGQ  +R  WR+Y+++T  +I+VVDS D+ R+ +                A 
Sbjct: 61  ISFTVWDVGGQDKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAREELMKMLNEDEMRNAI 120
Query: 126 LLVFANKQDIEGALTPEDIKNVSEK 150
           LLVFANK D+  A++   I  V+EK
Sbjct: 121 LLVFANKHDLPQAMS---ISEVTEK 142

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 70  IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVF 129
           +WD+GGQ+SLRS W  Y+ +T+ +I VVDS D+ R+                  A LL+F
Sbjct: 64  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 130 ANKQDIEGALTPEDI 144
           ANKQD++  +T  +I
Sbjct: 124 ANKQDVKECMTVAEI 138

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 70  IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVF 129
           +WD+GGQ+SLRS W  Y+ +T+ +I VVDS D+ R+                  A LL+F
Sbjct: 64  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 123
Query: 130 ANKQDIEGALTPEDI 144
           ANKQD++  +T  +I
Sbjct: 124 ANKQDVKECMTVAEI 138

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 27  GMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNI 70
           G++    Q   V +V L    N G+T IL +  M                I+    +  +
Sbjct: 13  GLVPRGSQEHKVIIVGL---DNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLM 69
Query: 71  WDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVFA 130
           WD+GGQ+SLRS W  Y+ +T+ +I VVDS D+ R+                  A LL+FA
Sbjct: 70  WDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFA 129
Query: 131 NKQDIEGALTPEDI 144
           NKQD++  +T  +I
Sbjct: 130 NKQDVKECMTVAEI 143

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 70  IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLLVF 129
           +WD+GGQ+SLRS W  Y+ +T+ +I VVDS D+ R+                  A LL+F
Sbjct: 70  MWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIF 129
Query: 130 ANKQDIEGALTPEDI 144
           ANKQD++  +T  +I
Sbjct: 130 ANKQDVKECMTVAEI 144

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
           + +WD+GGQ   RS W  Y      ++++VD+AD+ ++E                G  +L
Sbjct: 69  IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 128
Query: 128 VFANKQDIEGALTPEDI 144
           V  NK+D+ GAL  +++
Sbjct: 129 VLGNKRDLPGALDEKEL 145

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
           + +WD+GGQ   RS W  Y      ++++VD+AD+ ++E                G  +L
Sbjct: 78  IKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL 137
Query: 128 VFANKQDIEGALTPEDI 144
           V  NK+D+ GAL  +++
Sbjct: 138 VLGNKRDLPGALDEKEL 154

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 68  LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATLL 127
           + IWD+GGQ   RS W  Y    + +++++D+AD+ ++E                G  +L
Sbjct: 69  IKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVL 128
Query: 128 VFANKQDIEGALTPEDIKNVSEK 150
           V  NK+D+  AL   D K + EK
Sbjct: 129 VLGNKRDLPNAL---DEKQLIEK 148

>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRL-----EDCAXXXXXXXXXX 119
           R    ++D+GG K  R  W  Y+++ D +I+VVDS+D  RL     E  A          
Sbjct: 62  RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRE 121
Query: 120 XXAGA--TLLVFANKQDIEGALTPEDIKNVSEKAT 152
              G     L FANK D  GA T  ++  + +  T
Sbjct: 122 LPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT 156

>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 62  MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXX 121
           MTF      +D+GG +  R  W+NY  + +G++++VD AD  RL +              
Sbjct: 79  MTF----TTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDETI 134
Query: 122 AGATLLVFANKQDIEGALTPEDIKNV 147
           +   +L+  NK D   A++ E ++ +
Sbjct: 135 SNVPILILGNKIDRTDAISEEKLREI 160

>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 62  MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXX 121
           MTF      +D+GG    R  W+NY  + +G++++VD AD  RL +              
Sbjct: 66  MTF----TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI 121
Query: 122 AGATLLVFANKQDIEGALTPEDIKNV 147
           A   +L+  NK D   A++ E ++ +
Sbjct: 122 ANVPILILGNKIDRPEAISEERLREM 147

>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 62  MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXX 121
           MTF      +D+GG    R  W+NY  + +G++++VD AD  RL +              
Sbjct: 69  MTF----TTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI 124
Query: 122 AGATLLVFANKQDIEGALTPEDIKNV 147
           A   +L+  NK D   A++ E ++ +
Sbjct: 125 ANVPILILGNKIDRPEAISEERLREM 150

>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 62  MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXX 121
           MTF      +D+GG    R  W+NY  + +G++++VD AD  RL +              
Sbjct: 60  MTF----TTFDLGGGIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI 115
Query: 122 AGATLLVFANKQDIEGALTPEDIKNV 147
           A   +L+  NK D   A++ E ++ +
Sbjct: 116 ANVPILILGNKIDRPEAISEERLREM 141

>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 38/80 (47%)
Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
           K   +D+GG    R  W++YF   +G++++VD+AD  R ++                   
Sbjct: 46  KFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 105
Query: 127 LVFANKQDIEGALTPEDIKN 146
           ++  NK D   A++  ++++
Sbjct: 106 VILGNKIDAPNAVSEAELRS 125

>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/80 (22%), Positives = 38/80 (47%)
Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAXXXXXXXXXXXXAGATL 126
           K   +D+GG    R  W++YF   +G++++VD+AD  R ++                   
Sbjct: 68  KFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF 127
Query: 127 LVFANKQDIEGALTPEDIKN 146
           ++  NK D   A++  ++++
Sbjct: 128 VILGNKIDAPNAVSEAELRS 147

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-46
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-04
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	4e-45
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	6e-04
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	6e-45
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	6e-04
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-44
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	8e-04
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-44
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-44
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-44
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	6e-44
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	6e-44
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	7e-44
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	7e-44
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	6e-04
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	1e-43
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	3e-43
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-42
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-42
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	7e-04
2fh5_B	214	SR-beta, signal recognition particle receptor beta	7e-33
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-31
1nrj_B	218	SR-beta, signal recognition particle receptor beta	8e-31
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-30
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	1e-19
3llu_A	196	RAS-related GTP-binding protein C; structural geno	7e-18
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	5e-17
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	1e-14
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	3e-11
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-05
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-04
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-04
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	2e-04
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-04
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	4e-04
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	4e-04
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-04
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	5e-04
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	5e-04
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	5e-04
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	6e-04
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	6e-04
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	6e-04
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	7e-04
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	7e-04
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	8e-04
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	8e-04
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	8e-04
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	9e-04

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score =  148 bits (376), Expect = 4e-46
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 17/116 (14%)

Query: 48  NGGETLILKKKKM--------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFEST 90
             G+T  +                   +         + +WD+GGQ   RS W  Y    
Sbjct: 32  YSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGV 91

Query: 91  DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
             ++++VD+AD+ ++E    ELH LL + +L G  +LV  NK+D+ GAL  +++  
Sbjct: 92  SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIE 147

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 38.3 bits (90), Expect = 4e-04
 Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)

Query: 5  FKLNIWDVGGQKSLRSY--SYY 24
            + +WD+GGQ   RS    Y 
Sbjct: 67 VTIKLWDIGGQPRFRSMWERYC 88

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score =  145 bits (368), Expect = 4e-45
 Identities = 48/115 (41%), Positives = 73/115 (63%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T +LK+                I + + +   LN+WD+GGQ+ +R YWR+YFE+TD
Sbjct: 26  NAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTD 85

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
            LI+V+DSAD++R E+  +EL ELL+EE+L+   +L+FANKQD+  A    +I  
Sbjct: 86  ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAE 140

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 2/22 (9%)

Query: 5  FKLNIWDVGGQKSLRSY--SYY 24
          FKLN+WD+GGQ+ +R Y  SY+
Sbjct: 60 FKLNVWDIGGQRKIRPYWRSYF 81

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score =  145 bits (367), Expect = 6e-45
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T IL +  M             +           +WD+GGQ+SLRS W  Y+ +T+
Sbjct: 31  NAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTE 90

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
            +I VVDS D+ R+     EL+++L  E L  A LL+FANKQD++  +T  +I  
Sbjct: 91  FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQ 145

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 2/22 (9%)

Query: 5  FKLNIWDVGGQKSLRSY--SYY 24
           +  +WD+GGQ+SLRS   +YY
Sbjct: 65 TRFLMWDIGGQESLRSSWNTYY 86

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score =  144 bits (366), Expect = 1e-44
 Identities = 71/115 (61%), Positives = 81/115 (70%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T ILKK                I T   +   LNIWDVGGQKSLRSYWRNYFESTD
Sbjct: 28  NAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTD 87

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
           GLIWVVDSAD++R++DC REL  LL EERLAGATLL+FANKQD+ GAL+   I+ 
Sbjct: 88  GLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQE 142

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 18/22 (81%), Positives = 20/22 (90%), Gaps = 2/22 (9%)

Query: 5  FKLNIWDVGGQKSLRSY--SYY 24
          FKLNIWDVGGQKSLRSY  +Y+
Sbjct: 62 FKLNIWDVGGQKSLRSYWRNYF 83

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score =  143 bits (364), Expect = 2e-44
 Identities = 22/79 (27%), Positives = 40/79 (50%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT 125
            K   +D+GG    R  W++YF   +G++++VD+AD  R ++   EL  L     L    
Sbjct: 67  IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVP 126

Query: 126 LLVFANKQDIEGALTPEDI 144
            ++  NK D   A++  ++
Sbjct: 127 FVILGNKIDAPNAVSEAEL 145

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score =  143 bits (362), Expect = 3e-44
 Identities = 44/115 (38%), Positives = 66/115 (57%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
             G+T IL + ++             + T  +K     +WD+GG  S+R YWR Y+ +TD
Sbjct: 17  GAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTD 76

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
            +I+VVDS D+ R+     EL  +L+EE L  A L+VFANKQD+E A+T  ++ N
Sbjct: 77  AVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMAN 131

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score =  141 bits (359), Expect = 6e-44
 Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
             G+T IL K K+             + T  +K     +WDVGGQ  +R  WR+YF++T 
Sbjct: 10  AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQ 69

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
           GLI+VVDS D+ R+ +   EL  +L E+ L  A LLVFANKQD+  A+   +I +
Sbjct: 70  GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITD 124

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score =  142 bits (361), Expect = 6e-44
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T IL +  +             + T ++K     +WD+GGQ  +R YWR YF  TD
Sbjct: 32  NAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTD 91

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
            +I+VVDS D+ R+     EL+ LL E+ L  + LL+FANKQD+  A +  +I  
Sbjct: 92  AVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAE 146

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score =  143 bits (362), Expect = 7e-44
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKKM------IMTFRF----------KLNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T +L   K       + T                 +D+GG    R  W+NY  + +
Sbjct: 35  NAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAIN 94

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
           G++++VD AD  RL +   EL  L+ +E +A   +L+  NK D   A++ E ++ 
Sbjct: 95  GIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLRE 149

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  146 bits (371), Expect = 7e-44
 Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 21/153 (13%)

Query: 10  WDVGGQKSLRSYSYYGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKM--------- 60
           W +    +         G+   +     +  +        G+T IL K K+         
Sbjct: 142 WSLESSPAQNWTPPQPRGLFGKKEMRILMVGLD-----AAGKTTILYKLKLGEIVTTIPT 196

Query: 61  ----IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELH 113
               + T  +K     +WDVGGQ  +R  WR+YF++T GLI+VVDS D+ R+ +   EL 
Sbjct: 197 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELM 256

Query: 114 ELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
            +L E+ L  A LLVFANKQD+  A+   +I +
Sbjct: 257 RMLAEDELRDAVLLVFANKQDLPNAMNAAEITD 289

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 38.3 bits (89), Expect = 6e-04
 Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)

Query: 5   FKLNIWDVGGQKSLRSY--SYY 24
               +WDVGGQ  +R     Y+
Sbjct: 209 ISFTVWDVGGQDKIRPLWRHYF 230

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score =  142 bits (359), Expect = 1e-43
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
           N G+T IL +  M             +           +WD+GGQ+SLRS W  Y+ +T+
Sbjct: 26  NAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTE 85

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
            +I VVDS D+ R+     EL+++L  E L  A LL+FANKQD++  +T  +I  
Sbjct: 86  FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQ 140

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score =  141 bits (357), Expect = 3e-43
 Identities = 49/115 (42%), Positives = 68/115 (59%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
             G+T IL + ++             + T  +K   LN+WD+GGQ S+R YWR Y+  T 
Sbjct: 28  GAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTA 87

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
            +I+VVDS DK R+   ++ELH +LQEE L  A LLVFANKQD  GAL+  ++  
Sbjct: 88  AVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSK 142

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score =  139 bits (352), Expect = 1e-42
 Identities = 47/115 (40%), Positives = 69/115 (60%), Gaps = 16/115 (13%)

Query: 48  NGGETLILKKKKM-------------IMTFRFK---LNIWDVGGQKSLRSYWRNYFESTD 91
             G+T IL K K+             + T  +K     +WDVGGQ  +R  WR+YF++T 
Sbjct: 39  AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98

Query: 92  GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKN 146
           GLI+VVDS D+ R+++ A EL ++LQE+ L  A LLVFANKQD+  A+   ++ +
Sbjct: 99  GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTD 153

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score =  139 bits (352), Expect = 1e-42
 Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAG-- 123
               ++D+ GQ   R+ W +Y++    +I+V+DS+D+ R+     EL  LL    +    
Sbjct: 67  LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRR 126

Query: 124 ATLLVFANKQDIEGALTPEDIKN 146
             +L FANK D+  A+T   +  
Sbjct: 127 IPILFFANKMDLRDAVTSVKVSQ 149

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 2/22 (9%)

Query: 5  FKLNIWDVGGQKSLRSY--SYY 24
              ++D+ GQ   R+    YY
Sbjct: 67 LSFTVFDMSGQGRYRNLWEHYY 88

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score =  115 bits (289), Expect = 7e-33
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 9/104 (8%)

Query: 51  ETLILKKKKMIMTFRFKLNIWDVGGQKSLR-SYWRNYFESTDGLIWVVDSADK-RRLEDC 108
               +   +        L + D+ G +SLR      +  S   +++VVDSA   R ++D 
Sbjct: 44  AIYKVNNNR-----GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDV 98

Query: 109 ARELHELLQEERLA--GATLLVFANKQDIEGALTPEDIKNVSEK 150
           A  L+++L +        +LL+  NKQDI  A + + I+   EK
Sbjct: 99  AEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK 142

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score =  110 bits (277), Expect = 3e-31
 Identities = 27/103 (26%), Positives = 45/103 (43%), Gaps = 9/103 (8%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFES----TDGLIWVVDSA-DKRRLEDCARELHELLQEER 120
             + + D  G   LR    +Y ++      GLI++VDS  D ++L   A  L ++L    
Sbjct: 91  SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE 150

Query: 121 L---AGATLLVFANKQDIEGALTPEDIKNVSEKA-TKVKLNKQ 159
                G  +L+  NK ++  A  P  IK+  E    KV   ++
Sbjct: 151 SSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK 193

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score =  110 bits (276), Expect = 8e-31
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 66  FKLNIWDVGGQKSLRSYWRNYFES----TDGLIWVVDSA-DKRRLEDCARELHELLQEER 120
             + + D  G   LR    +Y ++      GLI++VDS  D ++L   A  L ++L    
Sbjct: 55  SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITE 114

Query: 121 L---AGATLLVFANKQDIEGALTPEDIKNVSEK 150
                G  +L+  NK ++  A  P  IK+  E 
Sbjct: 115 SSCENGIDILIACNKSELFTARPPSKIKDALES 147

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score =  108 bits (272), Expect = 2e-30
 Identities = 20/92 (21%), Positives = 41/92 (44%), Gaps = 6/92 (6%)

Query: 59  KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQE 118
             +  F+ + +++ V GQ    +  +      DG+++V DSA   RL   A  +  + + 
Sbjct: 67  GEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAP-NRLRANAESMRNMREN 125

Query: 119 -----ERLAGATLLVFANKQDIEGALTPEDIK 145
                  L    +++  NK+D+  AL  E ++
Sbjct: 126 LAEYGLTLDDVPIVIQVNKRDLPDALPVEMVR 157

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227

 Score = 81.3 bits (200), Expect = 1e-19
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 71  WDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEE-----RLAGAT 125
              G + S+    +   E  DG I+V ++   +R E    E   ++              
Sbjct: 107 DQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPL 165

Query: 126 LLVFANKQDIEGALTPEDI 144
           L++    Q     +    +
Sbjct: 166 LVLSCISQGDVKRMPCFYL 184

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 75.8 bits (186), Expect = 7e-18
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 7/97 (7%)

Query: 52  TLILKKKKMIMTFRFKLNIWDVGGQKSLRSYW---RNYFESTDGLIWVVDSADKRRLEDC 108
           T  + K  +  +      IWD  GQ             F  T  LI+V+D+ D       
Sbjct: 55  TNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALT 114

Query: 109 ARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK 145
              +      +        VF +K D       +D K
Sbjct: 115 RLHITVSKAYKVNPDMNFEVFIHKVD----GLSDDHK 147

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 75.4 bits (185), Expect = 5e-17
 Identities = 25/116 (21%), Positives = 41/116 (35%), Gaps = 10/116 (8%)

Query: 52  TLILKKKKMIMTFRFKLNIWDVGGQKS-----LRSYWRNYFESTDGLIWVVDSADKRRLE 106
           T+ ++   +       LN+WD GGQ             + F+    LI V D      L+
Sbjct: 38  TIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLK 97

Query: 107 DCARELHELLQEERLA-GATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQSK 161
           D       L Q  + +  A + V  +K D    L   D +    +     L++ S 
Sbjct: 98  DIEIFAKALKQLRKYSPDAKIFVLLHKMD----LVQLDKREELFQIMMKNLSETSS 149

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 69.4 bits (169), Expect = 1e-14
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 4/77 (5%)

Query: 72  DVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAG----ATLL 127
             G + S+    +   E  DG I+V ++   +R E      H +   +   G      L+
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLV 252

Query: 128 VFANKQDIEGALTPEDI 144
           +    Q     +    +
Sbjct: 253 LSCISQGDVKRMPCFYL 269

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 59.7 bits (144), Expect = 3e-11
 Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 11/103 (10%)

Query: 62  MTFRFKLNIWDVGGQKSLRSYW---RNYFESTDGLIWVVDSADKRRLEDCARELHELLQE 118
            +    L + ++ GQ +           F+S   L++V+DS D     +    L  +++ 
Sbjct: 42  FSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQD--EYINAITNLAMIIEY 99

Query: 119 --ERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKLNKQ 159
             +      + V  +K D       ED K  +++    +  ++
Sbjct: 100 AYKVNPSINIEVLIHKVD----GLSEDFKVDAQRDIMQRTGEE 138

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           R  L +WD  GQ+  RS  ++YF   DG++ + D   ++   +    +   +++      
Sbjct: 76  RTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDM-IEDAAHETV 134

Query: 125 TLLVFANKQDIEGALTPEDIKNVS 148
            +++  NK DI      E  K V 
Sbjct: 135 PIMLVGNKADIRDTAATEGQKCVP 158

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 1/79 (1%)

Query: 67  KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL 126
           K  IWD  GQ+   S    Y+ +    + V D    +        + E L E+      +
Sbjct: 53  KFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIII 111

Query: 127 LVFANKQDIEGALTPEDIK 145
            +  NK D         + 
Sbjct: 112 ALVGNKIDXLQEGGERKVA 130

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           + KL IWD  GQ+  R+    Y+    G+I V D  D+R   +  +     + E     A
Sbjct: 51  KVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT-VNEHANDEA 109

Query: 125 TLLVFANKQDIEG-ALTPEDIKNVSEK 150
            LL+  NK D+E   +T +  + ++++
Sbjct: 110 QLLLVGNKSDMETRVVTADQGEALAKE 136

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 10/88 (11%)

Query: 58  KKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD--KRRLEDCAR-ELHE 114
                       ++DVGGQ++ R  W + FE    +I+    ++  +   ED  +  + E
Sbjct: 175 VGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMME 234

Query: 115 LLQ-------EERLAGATLLVFANKQDI 135
             +       +      + ++F NK DI
Sbjct: 235 TKELFDWVLKQPCFEKTSFMLFLNKFDI 262

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           + KL +WD  GQ+  R+    Y+    G+I V D  D+R   +  +     + E     A
Sbjct: 68  KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKT-VNEHANDEA 126

Query: 125 TLLVFANKQDIE 136
            LL+  NK D+E
Sbjct: 127 QLLLVGNKSDME 138

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 20/72 (27%), Positives = 30/72 (41%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           + KL IWD  GQ+  R+   +Y+    G+I V D   +         L+EL         
Sbjct: 63  KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI 122

Query: 125 TLLVFANKQDIE 136
             ++  NK D E
Sbjct: 123 VNMLVGNKIDKE 134

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           R KL IWD  GQ+  R+    Y+    G + + D A++           + ++      A
Sbjct: 70  RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQ-IKTYSWDNA 128

Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
            +++  NK D+E    +  ED + +++ 
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADD 156

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           + KL +WD  GQ+  RS    Y+     L+ + D  +K   ++    L E + E      
Sbjct: 59  KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTE-IHEYAQHDV 117

Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
            L++  NK D      +  ED + ++++
Sbjct: 118 ALMLLGNKVDSAHERVVKREDGEKLAKE 145

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
             KL IWD  GQ+  R+   +Y+    G+I V D  D+    +  + L E +        
Sbjct: 64  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENV 122

Query: 125 TLLVFANKQDIE 136
             L+  NK D+ 
Sbjct: 123 NKLLVGNKCDLT 134

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 3/88 (3%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
             KL IWD  GQ+  R+   +Y+  + G+I V D  D+         L E +     +  
Sbjct: 56  TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQE-IDRYATSTV 114

Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
             L+  NK D++    +  +  K  ++ 
Sbjct: 115 LKLLVGNKCDLKDKRVVEYDVAKEFADA 142

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 3/88 (3%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           R KL IWD  GQ+  R+    Y+    G++ V D  +++  ++    +   ++E   A  
Sbjct: 56  RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRN-IEEHASADV 114

Query: 125 TLLVFANKQDIEG--ALTPEDIKNVSEK 150
             ++  NK D+     ++ E  + ++  
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALD 142

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
             KL IWD  GQ+  R+   +Y+    G+I V D  D+    +  + L E +        
Sbjct: 81  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQE-IDRYASENV 139

Query: 125 TLLVFANKQDIE 136
             L+  NK D+ 
Sbjct: 140 NKLLVGNKCDLT 151

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           R KL IWD  GQ+  R+    Y+    G I + D  ++           + ++      A
Sbjct: 71  RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQ-IKTYSWDNA 129

Query: 125 TLLVFANKQDIE 136
            +++  NK D+E
Sbjct: 130 QVILVGNKCDME 141

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA-- 122
           + KL IWD  GQ+S RS  R+Y+    G + V D   +         L +     + +  
Sbjct: 69  QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA---RQHSSS 125

Query: 123 GATLLVFANKQDIE 136
              +++  NK D+E
Sbjct: 126 NMVIMLIGNKSDLE 139

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           R KL IWD  GQ+  R+  ++Y+ S +G I   D   +         + + +++   +  
Sbjct: 77  RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIED-VRKYAGSNI 135

Query: 125 TLLVFANKQDIE 136
             L+  NK D+ 
Sbjct: 136 VQLLIGNKSDLS 147

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 37.6 bits (88), Expect = 7e-04
 Identities = 15/72 (20%), Positives = 30/72 (41%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           R  L +WD  G +  RS    +F    G + + D  +++   +    + +L         
Sbjct: 69  RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENP 128

Query: 125 TLLVFANKQDIE 136
            +++  NK D+E
Sbjct: 129 DIVLCGNKSDLE 140

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
             KL IWD  GQ+  RS  R+Y+    G + V D   +         L +      LA  
Sbjct: 58  YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA---RMLASQ 114

Query: 125 TLLVF--ANKQDIE 136
            +++    NK+D++
Sbjct: 115 NIVIILCGNKKDLD 128

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA-- 122
             KL IWD  GQ+  RS  R+Y+    G + V D   +      A  L +      LA  
Sbjct: 73  TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA---RTLASP 129

Query: 123 GATLLVFANKQDIE 136
              +++  NK+D++
Sbjct: 130 NIVVILCGNKKDLD 143

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 37.2 bits (87), Expect = 8e-04
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           + +L IWD  GQ+   S    Y+ S  G+I V D   K   +D  + +   + +     A
Sbjct: 74  KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKM-IDKYASEDA 132

Query: 125 TLLVFANKQDIE 136
            LL+  NK D E
Sbjct: 133 ELLLVGNKLDCE 144

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 37.2 bits (87), Expect = 9e-04
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           + KL IWD  GQ+  RS  ++Y+ S + LI   D   +         L E +++      
Sbjct: 74  KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLRE-IEQYASNKV 132

Query: 125 TLLVFANKQDIE 136
             ++  NK D+ 
Sbjct: 133 ITVLVGNKIDLA 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.97
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.96
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.96
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.96
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.96
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.96
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.96
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.96
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.96
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.96
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.96
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.96
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.96
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.96
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.96
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.96
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.96
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.96
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.96
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.96
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.96
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.96
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.95
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.95
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.95
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.95
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.95
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.95
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.95
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.95
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.95
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.95
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.95
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.95
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.95
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.95
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.95
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.95
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.95
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.95
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.95
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.95
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.95
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.95
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.95
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.95
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.95
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.95
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.95
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.95
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.95
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.95
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.95
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.95
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.95
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.95
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.95
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.95
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.95
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.95
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.95
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.95
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.95
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.95
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.95
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.95
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.94
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.94
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.94
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.93
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.93
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.93
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.87
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.92
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.91
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.91
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.91
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.91
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.91
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.9
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.9
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.9
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.9
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.9
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.9
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.89
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.89
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.89
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.88
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.88
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.88
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.88
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.88
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.88
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.88
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.87
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.86
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.86
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.86
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.86
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.85
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.85
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.85
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.85
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.85
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.84
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.84
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.83
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.83
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.83
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.82
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.82
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.81
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.8
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.8
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.8
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.79
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.78
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.77
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.77
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.76
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.76
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.76
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.76
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.75
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.75
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.74
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.74
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.74
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.73
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.73
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.72
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.72
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.72
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.72
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.72
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.72
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.71
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.71
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.7
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.7
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.7
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.69
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.67
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.66
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.65
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.65
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.64
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.63
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.63
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.63
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.6
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.6
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.59
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.59
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.57
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.56
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.56
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.54
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.54
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.53
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.53
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.52
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.49
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.49
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.49
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.47
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.47
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.46
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.46
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.43
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.4
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.4
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.39
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.29
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.27
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.26
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.25
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.23
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.2
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.09
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.07
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.03
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.82
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.58
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.58
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.56
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.54
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.45
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.44
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.38
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.37
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.34
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.25
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.23
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.19
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.09
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.07
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.05
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.97
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.95
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.73
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.69
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.67
2xxa_A	433	Signal recognition particle protein; protein trans	97.67
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.64
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.61
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.55
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.5
3end_A	307	Light-independent protochlorophyllide reductase ir	97.48
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.44
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.43
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.41
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.3
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.3
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.25
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.23
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.19
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.17
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.16
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.06
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.06
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.06
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.05
3bos_A	242	Putative DNA replication factor; P-loop containing	97.02
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.02
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.0
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.0
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.99
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.98
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.97
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.96
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.96
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.94
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.92
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.9
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.9
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.88
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.87
3co5_A	143	Putative two-component system transcriptional RES	96.87
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.86
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.86
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.84
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.84
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.83
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	96.83
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.82
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.82
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.81
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.8
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.79
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.78
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.78
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.77
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.77
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	96.77
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.76
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.76
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.76
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.76
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.75
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.75
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.74
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.73
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.72
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.72
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.71
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.69
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.69
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.68
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.68
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.67
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.67
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.67
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.67
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.67
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.67
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	96.67
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.66
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	96.66
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.66
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.65
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.65
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	96.65
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.65
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.64
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.64
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.64
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.64
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	96.64
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.63
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.63
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.63
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.62
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.62
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.62
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.61
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.61
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.61
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.61
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.6
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.59
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.59
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.59
1g6h_A	257	High-affinity branched-chain amino acid transport	96.59
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	96.58
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.58
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.58
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.57
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.57
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.56
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.55
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.55
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.55
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.55
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.54
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.53
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.53
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.53
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.53
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.53
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.52
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.52
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.52
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.51
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	96.51
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.51
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.51
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.51
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.5
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.5
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.5
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.5
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.49
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.49
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.48
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.48
1via_A	175	Shikimate kinase; structural genomics, transferase	96.48
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.47
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.47
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.47
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.46
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.45
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.45
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.44
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.44
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.44
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	96.42
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.42
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.41
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.41
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.41
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.41
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.39
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.38
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.38
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.38
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.37
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.36
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.36
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.35
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.35
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.34
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.33
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.32
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.32
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.32
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.31
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.31
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.31
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.31
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	96.3
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	96.28
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.27
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.27
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.27
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.27
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	96.26
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.25
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.24
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.23
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.23
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.22
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.22
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.22
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.22
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.21
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	96.21
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.21
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.2
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.19
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.19
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.19
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.18
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.18
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.16
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.15
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.15
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.14
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.14
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.12
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.1
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.09
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.09
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.08
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	96.06
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.06
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.06
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.06
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.06
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.05
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.04
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.04
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.02
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.01
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.0
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.96
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	95.96
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.96
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.95
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.93
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.93
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.92
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.92
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.92
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	95.91
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.91
2cvh_A	220	DNA repair and recombination protein RADB; filamen	95.9
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.9
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.9
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.88
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	95.88
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.88
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.87
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	95.85
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.84
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.82
2chq_A	319	Replication factor C small subunit; DNA-binding pr	95.82
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.81
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.81
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.79
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.79
2og2_A	359	Putative signal recognition particle receptor; nuc	95.78
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.78
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.78
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	95.77
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.77
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.77
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.76
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.76
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.72
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.68
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.67
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.67
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.65
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.64
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.61
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.59
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.55
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.54
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.53
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.53
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	95.52
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.51
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.51
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.5
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.48
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.48
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.47
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.47
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.42
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.41

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=2.8e-33  Score=207.57  Aligned_cols=136  Identities=16%  Similarity=0.306  Sum_probs=119.1

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      .+.+.+||+++|++|||||||++++..                     .+...+.+++|||+|+++|+.+++.|++++++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            356789999999999999999999986                     44567889999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      +++|||++++.+|+.+..|+..+... ..+++|+++||||+|+.+  .++.+++.++.        ++||++|.||+++|
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F  167 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF  167 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHH
Confidence            99999999999999999999998654 346899999999999976  57888887776        67999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.+.
T Consensus       168 ~~i~~~i~  175 (216)
T 4dkx_A          168 RRVAAALP  175 (216)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHH
Confidence            99998774

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.97  E-value=1.2e-29  Score=182.48  Aligned_cols=136  Identities=39%  Similarity=0.644  Sum_probs=119.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +.+.+||+++|++|||||||++++.+                +....+.+.+||++|++.++..+..+++++|++++|+|
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d   92 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID   92 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence            46789999999999999999999997                22346789999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l  165 (171)
                      ++++.+|+.+..|+..++......++|+++|+||+|+.+....+++.+..             ++||++|.|++++|+++
T Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  172 (181)
T 1fzq_A           93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWV  172 (181)
T ss_dssp             TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHH
Confidence            99999999999999998776556789999999999998876666665442             57999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       173 ~~~~~  177 (181)
T 1fzq_A          173 CKNVN  177 (181)
T ss_dssp             HHTC-
T ss_pred             HHHHH
Confidence            88764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.97  E-value=4.7e-29  Score=181.12  Aligned_cols=137  Identities=35%  Similarity=0.577  Sum_probs=116.2

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      ..++.+||+++|++|||||||++++..                +....+.+.+||+||++++...+..+++++|++++|+
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~  104 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV  104 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence            367889999999999999999999976                3445688999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~  164 (171)
                      |++++.+++.+..|+..++......++|+++|+||+|+.+..+.+++.+..             ++||++|.|++++|+.
T Consensus       105 D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  184 (192)
T 2b6h_A          105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDW  184 (192)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHH
Confidence            999999999999999999876666789999999999998866666655443             5799999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       185 l~~~i~  190 (192)
T 2b6h_A          185 LSHELS  190 (192)
T ss_dssp             HHHHTT
T ss_pred             HHHHHh
Confidence            998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=6.9e-29  Score=174.79  Aligned_cols=132  Identities=35%  Similarity=0.599  Sum_probs=115.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK  102 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~  102 (171)
                      +||+++|++|||||||++++.+                +....+.+.+||+||++.++.++..+++++|++++|+|++++
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~   80 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence            5899999999999999999986                344568899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510        103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      .+|+.+..|+..++.....++.|+++|+||+|+.+..+.+++.+..             ++||++|.|++++|+.+++.+
T Consensus        81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  160 (164)
T 1r8s_A           81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (164)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHH
Confidence            9999999999999876666789999999999998866655555433             579999999999999999876


Q ss_pred             h
Q psy11510        170 S  170 (171)
Q Consensus       170 ~  170 (171)
                      .
T Consensus       161 ~  161 (164)
T 1r8s_A          161 R  161 (164)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.96  E-value=6.3e-29  Score=175.33  Aligned_cols=134  Identities=16%  Similarity=0.196  Sum_probs=101.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +.+||+++|++|||||||++++.+                   .+...+.+.+||++|++.+..++..+++.+|++++||
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   80 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence            368999999999999999999987                   3445678899999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++.+|+.+..|+..+......+++|+++|+||+|+.+  .++.++...+.        ++||++|.|++++|+.+++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  160 (166)
T 3q72_A           81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  160 (166)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHH
Confidence            9999999999999999998765567899999999999975  45666655554        5799999999999999998


Q ss_pred             HHh
Q psy11510        168 EVS  170 (171)
Q Consensus       168 ~i~  170 (171)
                      .+.
T Consensus       161 ~~~  163 (166)
T 3q72_A          161 QIR  163 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=8.3e-29  Score=178.17  Aligned_cols=135  Identities=56%  Similarity=0.843  Sum_probs=119.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ++.+||+++|++|||||||++++.+                +..+...+.+||+||++++...+..+++++|++++|+|+
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   95 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   95 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence            6889999999999999999999986                233567899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~  166 (171)
                      +++.+++.+..|+..++......++|+++|+||+|+.+..+.+++.+..             ++||++|.|++++|+.++
T Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  175 (186)
T 1ksh_A           96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLL  175 (186)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999876656789999999999998876766665543             579999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       176 ~~i~  179 (186)
T 1ksh_A          176 DDIS  179 (186)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.96  E-value=1.6e-28  Score=173.81  Aligned_cols=135  Identities=33%  Similarity=0.586  Sum_probs=118.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ++.+||+++|++|||||||++++..                +......+.+||+||++.+...+..+++++|++++|+|+
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   84 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS   84 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence            4679999999999999999999976                334468899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~  166 (171)
                      +++.+|+....|+..++......++|+++|+||+|+.+..+.+++.+..             ++||++|.|++++|+.++
T Consensus        85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (171)
T 1upt_A           85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLV  164 (171)
T ss_dssp             TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHH
Confidence            9999999999999998876555789999999999998866666655443             579999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       165 ~~i~  168 (171)
T 1upt_A          165 ETLK  168 (171)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8774

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=6.5e-29  Score=181.26  Aligned_cols=135  Identities=24%  Similarity=0.446  Sum_probs=115.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      ..+.+||+++|++|||||||++++.+                +..+++.+.+||+||++.++.+++.+++++|++++|+|
T Consensus        22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D  101 (198)
T 1f6b_A           22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD  101 (198)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEE
Confidence            35678999999999999999999986                33345889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------------------Hhhhc
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------------------EKATK  153 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------------------~~sa~  153 (171)
                      ++++.+|+.+..|+..+++.....++|+++|+||+|+.+.++.+++.+.+                         ++||+
T Consensus       102 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  181 (198)
T 1f6b_A          102 CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL  181 (198)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECC
Confidence            99999999999999999876556789999999999998877888777653                         46999


Q ss_pred             cCCCHHHHHHHHHHHH
Q psy11510        154 VKLNKQSKFQVLLNEV  169 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~i  169 (171)
                      +|.|++++|+++++.+
T Consensus       182 ~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          182 KRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             TTBSHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhc
Confidence            9999999999998654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=2.1e-28  Score=176.43  Aligned_cols=136  Identities=32%  Similarity=0.483  Sum_probs=116.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      .++.+||+++|.+|||||||++++.+                +..++..+.+||++|++++...+..+++++|++++|+|
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   92 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD   92 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence            36789999999999999999999995                33356889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l  165 (171)
                      ++++++|+.+..|+..++......+.|+++|+||+|+.+..+.+++.+..             ++||++|.|++++|+.+
T Consensus        93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  172 (187)
T 1zj6_A           93 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM  172 (187)
T ss_dssp             TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHH
Confidence            99999999999999999876555789999999999998877777666553             57999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       173 ~~~~~  177 (187)
T 1zj6_A          173 MSRLK  177 (187)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            98764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.96  E-value=8.2e-29  Score=177.64  Aligned_cols=136  Identities=20%  Similarity=0.266  Sum_probs=120.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|++|||||||++++..                    .+...+.+.+||++|++.+..++..+++++|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   94 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   94 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            56789999999999999999999996                    3344567888999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhc-cCCCHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATK-VKLNKQSKFQ  163 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~-~~~~v~~~f~  163 (171)
                      +|||++++.+|+.+..|+..+.......++|+++|+||+|+.+  .++.+++..+.        ++||+ +|.|++++|+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~  174 (183)
T 3kkq_A           95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  174 (183)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHH
Confidence            9999999999999999999987755567899999999999976  56777776665        56999 9999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       175 ~l~~~i~  181 (183)
T 3kkq_A          175 DLVRVIR  181 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998875

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.96  E-value=1.4e-28  Score=177.72  Aligned_cols=136  Identities=28%  Similarity=0.511  Sum_probs=119.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      .++.+||+++|.+|||||||++++.+                 +....+.+.+||++|++.+..++..+++++|++++|+
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   98 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV   98 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence            45789999999999999999999986                 3345678999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~  164 (171)
                      |++++.+++.+..|+..++......++|+++|+||+|+.+..+.+++.+..             ++||++|.|++++|+.
T Consensus        99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~  178 (188)
T 1zd9_A           99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQW  178 (188)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHH
Confidence            999999999999999999876555789999999999998866666555442             6799999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       179 l~~~~~  184 (188)
T 1zd9_A          179 LIQHSK  184 (188)
T ss_dssp             HHHTCC
T ss_pred             HHHHHH
Confidence            988653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=5.6e-29  Score=178.33  Aligned_cols=136  Identities=37%  Similarity=0.617  Sum_probs=115.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      +++.+||+++|++|||||||++++..                +..++..+.+||+||++.+...+..+++++|++++|+|
T Consensus        15 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d   94 (183)
T 1moz_A           15 SNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVD   94 (183)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            37899999999999999999999985                33346889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l  165 (171)
                      ++++.+++.+..|+..++......++|+++|+||+|+.+..+.+++.+..             ++||++|.|++++|+.+
T Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  174 (183)
T 1moz_A           95 STDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWL  174 (183)
T ss_dssp             TTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence            99999999999999999776555789999999999998877777666553             56999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       175 ~~~~~  179 (183)
T 1moz_A          175 IDVIK  179 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.96  E-value=1.6e-28  Score=177.50  Aligned_cols=136  Identities=19%  Similarity=0.227  Sum_probs=116.9

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------cccCceEEEEEecCCccchh
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKM--------------------------------IMTFRFKLNIWDVGGQKSLR   80 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~--------------------------------~~~~~~~~~i~d~~g~~~~~   80 (171)
                      ....+.+||+++|++|||||||++.+.+                                .+...+.+.+||+||++.+.
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             hccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            3456789999999999999999987764                                11234679999999999999


Q ss_pred             HHHHHhhhCCCEEEEEEeCC------ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH------
Q psy11510         81 SYWRNYFESTDGLIWVVDSA------DKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS------  148 (171)
Q Consensus        81 ~~~~~~~~~~~~ii~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~------  148 (171)
                      .+++.+++++|++++|||++      +..+|+.+..|+..+.  ....++|+++|+||+|+.+.++.+++.+++      
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~  166 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKF  166 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCS
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCc
Confidence            99999999999999999999      5677888888888772  334789999999999999888888888776      


Q ss_pred             ---HhhhccCCCHHHHHHHHHHHHh
Q psy11510        149 ---EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       149 ---~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                         ++||++|.|++++|+.+++.++
T Consensus       167 ~~~~~Sa~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          167 PVLEAVATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             CEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCcCHHHHHHHHHHHHH
Confidence               6699999999999999998875

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=1.1e-28  Score=178.96  Aligned_cols=134  Identities=23%  Similarity=0.426  Sum_probs=116.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      ..+.+||+++|++|||||||++++.+                +..++..+.+||+||++.++.+++.+++++|++++|+|
T Consensus        20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d   99 (190)
T 1m2o_B           20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   99 (190)
T ss_dssp             ----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence            45778999999999999999999986                33345889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------------HhhhccCCCH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------------EKATKVKLNK  158 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------------~~sa~~~~~v  158 (171)
                      ++++.+|+.+..|+..+++.....++|+++|+||+|+.+.++.+++.+.+                    ++||++|.|+
T Consensus       100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  179 (190)
T 1m2o_B          100 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY  179 (190)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSH
T ss_pred             CCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCH
Confidence            99999999999999999876556789999999999998877777777653                    5699999999


Q ss_pred             HHHHHHHHHH
Q psy11510        159 QSKFQVLLNE  168 (171)
Q Consensus       159 ~~~f~~l~~~  168 (171)
                      +++|+++++.
T Consensus       180 ~~l~~~l~~~  189 (190)
T 1m2o_B          180 LEAFQWLSQY  189 (190)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.96  E-value=1.7e-28  Score=172.93  Aligned_cols=134  Identities=17%  Similarity=0.267  Sum_probs=116.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++.+                    .+...+.+.+||+||++.+..++..+++++|++++|
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   81 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            578999999999999999999986                    233467899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l  165 (171)
                      +|++++.+++.+..|+..+.......++|+++|+||+|+.+  .++.+++..+.         ++||++|.|++++|+.+
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (167)
T 1c1y_A           82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHH
Confidence            99999999999999998887655456899999999999975  35566666554         46999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       162 ~~~i~  166 (167)
T 1c1y_A          162 VRQIN  166 (167)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98774

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=178.60  Aligned_cols=136  Identities=14%  Similarity=0.228  Sum_probs=115.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhH-HHHHhhhCCCE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRS-YWRNYFESTDG   92 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~   92 (171)
                      ..+.+||+++|++|||||||++++.+                     +++..+.+.+||++|++.+.. +++.+++.+|+
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~   99 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA   99 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence            56789999999999999999999964                     234457889999999998765 78889999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      +++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+  .++.+++..+.        ++||++|.|++++|
T Consensus       100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf  179 (195)
T 3cbq_A          100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELF  179 (195)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHH
Confidence            999999999999999999999887654445899999999999975  46666666554        67999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.+.
T Consensus       180 ~~l~~~i~  187 (195)
T 3cbq_A          180 EGAVRQIR  187 (195)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.96  E-value=1.8e-28  Score=172.69  Aligned_cols=135  Identities=21%  Similarity=0.322  Sum_probs=115.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      .+.+||+++|++|||||||++++.+                    .+...+.+.+||+||++.+..++..+++.+|++++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            3579999999999999999999986                    23345689999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |+|++++.+++.+..|+..+.......++|+++|+||+|+.+  .++.+++..+.        ++||++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            999999999999999999987765556899999999999965  46666666665        56999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       162 ~~~i~  166 (168)
T 1u8z_A          162 MREIR  166 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.96  E-value=1.3e-28  Score=178.56  Aligned_cols=136  Identities=28%  Similarity=0.452  Sum_probs=117.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      ..+..||+++|..|||||||++++.+                  ++...+.+.+||++|++.+..++..+++++|++++|
T Consensus        14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v   93 (199)
T 4bas_A           14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV   93 (199)
T ss_dssp             --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence            67889999999999999999999997                  344568899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcccc-------CCCeEEEEEeCCCCCCCCCHHHHHHHH--------------HhhhccC
Q psy11510         97 VDSADKRRLEDCARELHELLQEERL-------AGATLLVFANKQDIEGALTPEDIKNVS--------------EKATKVK  155 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~-------~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------~~sa~~~  155 (171)
                      ||++++.+|+.+..|+..++.....       .++|+++|+||+|+.+....+++.+.+              ++||++|
T Consensus        94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  173 (199)
T 4bas_A           94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKG  173 (199)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTT
T ss_pred             EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCc
Confidence            9999999999999999998765332       389999999999998876666655443              5799999


Q ss_pred             CCHHHHHHHHHHHHh
Q psy11510        156 LNKQSKFQVLLNEVS  170 (171)
Q Consensus       156 ~~v~~~f~~l~~~i~  170 (171)
                      .|++++|+.+++.+.
T Consensus       174 ~gv~~l~~~l~~~~~  188 (199)
T 4bas_A          174 TGVHEGFSWLQETAS  188 (199)
T ss_dssp             BTHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=1.5e-28  Score=176.50  Aligned_cols=134  Identities=33%  Similarity=0.488  Sum_probs=116.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      ..+.+||+++|..|||||||++++.+                +...+..+.+||++|++++...+..+++++|++++|+|
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D   97 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD   97 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            56789999999999999999999986                33356889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l  165 (171)
                      ++++.+++.+..|+..++......++|+++|+||+|+.+..+.+++.+..             ++||++|.|++++|+.+
T Consensus        98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  177 (181)
T 2h17_A           98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM  177 (181)
T ss_dssp             TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHH
Confidence            99999999999999999876555789999999999998877777766553             57999999999999999


Q ss_pred             HHH
Q psy11510        166 LNE  168 (171)
Q Consensus       166 ~~~  168 (171)
                      ++.
T Consensus       178 ~~~  180 (181)
T 2h17_A          178 MSR  180 (181)
T ss_dssp             HTC
T ss_pred             Hhh
Confidence            864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.96  E-value=9e-29  Score=177.11  Aligned_cols=136  Identities=17%  Similarity=0.223  Sum_probs=116.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|++|||||||++++.+                    .+...+.+.+||+||++.+..++..+++++|+++
T Consensus         3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            34689999999999999999999995                    2334478899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++.+++.+..|+..+.+.....++|+++|+||+|+.+  .++.+++.++.        ++||++|.|++++|+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999999999998776667899999999999965  56677776665        5699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       163 l~~~~~  168 (181)
T 3t5g_A          163 IILEAE  168 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.96  E-value=5.5e-28  Score=171.70  Aligned_cols=135  Identities=14%  Similarity=0.147  Sum_probs=107.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc--hhHHHHHhhhCCCEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS--LRSYWRNYFESTDGL   93 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~--~~~~~~~~~~~~~~i   93 (171)
                      .+.+||+++|++|||||||++++.+                    .+...+.+.+||++|++.  +..+...+++.+|++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            4679999999999999999999987                    233456789999999988  567788889999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+  .++.++...+.        ++||++|.|++++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE  161 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            99999999999999999988886654456899999999999976  35666655543        679999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       162 ~l~~~~~  168 (175)
T 2nzj_A          162 GVVRQLR  168 (175)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998763

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.96  E-value=2.9e-28  Score=175.89  Aligned_cols=131  Identities=16%  Similarity=0.249  Sum_probs=113.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+.+||+++|++|||||||++++.+                   +++..+.+.+||++|++.+.     +++++|++++
T Consensus        17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~   91 (184)
T 3ihw_A           17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVF   91 (184)
T ss_dssp             CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEE
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEE
Confidence            67899999999999999999999987                   33445788999999999887     7888999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC----CCCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE----GALTPEDIKNVS---------EKATKVKLNKQSKF  162 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~----~~~~~~~~~~~~---------~~sa~~~~~v~~~f  162 (171)
                      |||++++.+|+.+..|+..+.......++|+++|+||+|+.    ..++.+++.++.         ++||++|.|++++|
T Consensus        92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf  171 (184)
T 3ihw_A           92 VFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVF  171 (184)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHH
Confidence            99999999999999999999766544689999999999994    256777666655         56999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.+.
T Consensus       172 ~~l~~~i~  179 (184)
T 3ihw_A          172 QDVAQKVV  179 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.96  E-value=2.2e-28  Score=173.01  Aligned_cols=133  Identities=15%  Similarity=0.232  Sum_probs=110.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhH-HHHHhhhCCCEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRS-YWRNYFESTDGLIW   95 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ii~   95 (171)
                      .+||+++|++|||||||++++.+                     .+...+.+.+||++|++.+.. ++..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            58999999999999999999975                     344467889999999998876 77788899999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||++++.+++.+..|+..+.......++|+++|+||+|+.+  .++.++...+.        ++||++|.|++++|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            999999999999999999998765556899999999999974  56777766655        67999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       162 ~~~i~  166 (169)
T 3q85_A          162 VRQIR  166 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.96  E-value=6.3e-28  Score=171.85  Aligned_cols=137  Identities=18%  Similarity=0.303  Sum_probs=117.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .++..+.+.+||+||++.+...+..+++++|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            45789999999999999999999986                     223346899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCC-CCCHHHHHHHH---------HhhhccCCCHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEG-ALTPEDIKNVS---------EKATKVKLNKQS  160 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~---------~~sa~~~~~v~~  160 (171)
                      ++|+|++++.+++.+..|+..+.....   ..++|+++|+||+|+.+ .+..+++.++.         ++||++|.|+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  163 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            999999999999999989888765322   26799999999999975 56677776665         469999999999


Q ss_pred             HHHHHHHHHhC
Q psy11510        161 KFQVLLNEVSN  171 (171)
Q Consensus       161 ~f~~l~~~i~~  171 (171)
                      +|+.+++.+++
T Consensus       164 l~~~l~~~~~~  174 (177)
T 1wms_A          164 AFEEAVRRVLA  174 (177)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999998763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.96  E-value=4.8e-28  Score=173.97  Aligned_cols=135  Identities=16%  Similarity=0.275  Sum_probs=114.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ++.+||+++|++|||||||++++.+                    .++..+.+.+||+||++.+..++..+++.+|++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            4689999999999999999999987                    33445668899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      |+|++++.+++.+..|+..+.......+.|+++|+||+|+.+ ....+++..+.        ++||++|.|++++|+.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  161 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV  161 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999987766567899999999999976 45566655554        569999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       162 ~~~~  165 (189)
T 4dsu_A          162 REIR  165 (189)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=1.7e-28  Score=177.14  Aligned_cols=135  Identities=33%  Similarity=0.563  Sum_probs=118.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ++.+||+++|++|||||||++++..                +......+.+||+||++++...+..+++++|++++|+|+
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~   99 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS   99 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence            6889999999999999999999976                334568899999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~  166 (171)
                      +++++++.+..|+..++.....+++|+++|+||+|+.+..+.+++.+..             ++||++|.|++++|+.++
T Consensus       100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  179 (189)
T 2x77_A          100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLV  179 (189)
T ss_dssp             TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHH
Confidence            9999999999999998876656789999999999998866666655443             579999999999999998


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       180 ~~i~  183 (189)
T 2x77_A          180 ERLR  183 (189)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=6.2e-28  Score=174.37  Aligned_cols=135  Identities=26%  Similarity=0.419  Sum_probs=117.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      ..+.+||+++|..|||||||++++.+                  +..++..+.+||++|++.+...+..+++++|++++|
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v   97 (190)
T 2h57_A           18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFV   97 (190)
T ss_dssp             ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence            45789999999999999999999987                  233457899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcccc--CCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERL--AGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSK  161 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~  161 (171)
                      +|++++.+++.+..|+..++.....  .++|+++|+||+|+.+..+.+++.+.+             ++||++|.|++++
T Consensus        98 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  177 (190)
T 2h57_A           98 IDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEG  177 (190)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHH
Confidence            9999999999999999999876544  689999999999998877777776655             4699999999999


Q ss_pred             HHHHHHHH
Q psy11510        162 FQVLLNEV  169 (171)
Q Consensus       162 f~~l~~~i  169 (171)
                      |+.+++.+
T Consensus       178 ~~~l~~~i  185 (190)
T 2h57_A          178 VDWLQDQI  185 (190)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99998765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.96  E-value=7e-28  Score=176.08  Aligned_cols=135  Identities=21%  Similarity=0.348  Sum_probs=117.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .+...+.+.+||++|++++..++..+++++|++
T Consensus        26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (201)
T 2hup_A           26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA  105 (201)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence            45679999999999999999999986                     222347899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKF  162 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f  162 (171)
                      ++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+  .++.+++.++.         ++||++|.|++++|
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  184 (201)
T 2hup_A          106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF  184 (201)
T ss_dssp             EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999998886543 46899999999999975  56677766654         56999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.+.
T Consensus       185 ~~l~~~i~  192 (201)
T 2hup_A          185 LRVATELI  192 (201)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.96  E-value=7.9e-28  Score=171.31  Aligned_cols=136  Identities=21%  Similarity=0.340  Sum_probs=117.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|..|||||||++++.+                     .+...+.+.+||+||++.+...+..+++++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            45689999999999999999999987                     223456899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+  .+..+++.++.        ++||++|.|++++|+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  170 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL  170 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998887543 235899999999999965  45666666665        569999999999999


Q ss_pred             HHHHHHhC
Q psy11510        164 VLLNEVSN  171 (171)
Q Consensus       164 ~l~~~i~~  171 (171)
                      .+++.+++
T Consensus       171 ~l~~~i~~  178 (179)
T 1z0f_A          171 EAAKKIYQ  178 (179)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHhh
Confidence            99988753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.96  E-value=4e-28  Score=173.15  Aligned_cols=136  Identities=17%  Similarity=0.329  Sum_probs=118.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|..|||||||++++.+                    .++..+.+.+||+||++.+..++..+++++|+++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            56789999999999999999999986                    2233468899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|+|++++.+++.+..|+..++......++|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+.
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  165 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  165 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            9999999999999999999987665557899999999999975  45666665554        5699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       166 l~~~~~  171 (181)
T 2fn4_A          166 LVRAVR  171 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=7.8e-28  Score=173.84  Aligned_cols=136  Identities=21%  Similarity=0.286  Sum_probs=118.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .+...+.+.+||+||++.+...+..+++++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            45679999999999999999999986                     233457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      ++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ .+..++...+.        ++||++|.|++++|+.
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999987654456899999999999965 45666666654        5699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       172 l~~~~~  177 (195)
T 1x3s_A          172 LVEKII  177 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.96  E-value=8.5e-28  Score=171.74  Aligned_cols=135  Identities=21%  Similarity=0.313  Sum_probs=116.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++..                     .+...+.+.+||+||++.+...+..+++++|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            56789999999999999999999987                     223356899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+.... .+++|+++|+||+|+.+  .+..+++.++.        ++||++|.|++++|+
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            99999999999999999998886543 36899999999999965  45667776665        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       168 ~l~~~~~  174 (181)
T 2efe_B          168 EIARRLP  174 (181)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHH
Confidence            9987653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.96  E-value=5.6e-28  Score=170.59  Aligned_cols=135  Identities=18%  Similarity=0.280  Sum_probs=116.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      +.+.+||+++|++|||||||++++.+                     .+...+.+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            35689999999999999999999986                     233467899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+.... .+++|+++|+||+|+.+  .++.+++..+.        ++||++|.|++++|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM  161 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999998886543 36899999999999965  45666666654        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       162 ~i~~~~~  168 (170)
T 1r2q_A          162 AIAKKLP  168 (170)
T ss_dssp             HHHHTSC
T ss_pred             HHHHHHh
Confidence            9988653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.96  E-value=1.4e-27  Score=174.06  Aligned_cols=136  Identities=21%  Similarity=0.318  Sum_probs=118.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|++|||||||++++.+                    .+...+.+.+||+||++.+..++..+++.+|+++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            56789999999999999999999986                    2334468999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++.+++.+..|+..+.......++|+++|+||+|+.+  .++.+++..+.        ++||++|.|++++|+.
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  170 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999987765556899999999999976  46666666665        5699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       171 l~~~i~  176 (206)
T 2bov_A          171 LMREIR  176 (206)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.96  E-value=3.7e-28  Score=171.83  Aligned_cols=136  Identities=21%  Similarity=0.267  Sum_probs=110.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .++..+.+.+||+||++.+...+..+++++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA   82 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence            35789999999999999999999986                     334557899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+... ..+++|+++|+||+|+.+  .++.+++.++.        ++||++|.|++++|+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1z08_A           83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL  161 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            9999999999999999998887543 235799999999999975  46666666665        569999999999999


Q ss_pred             HHHHHHhC
Q psy11510        164 VLLNEVSN  171 (171)
Q Consensus       164 ~l~~~i~~  171 (171)
                      .+++.+.+
T Consensus       162 ~l~~~~~~  169 (170)
T 1z08_A          162 DLCKRMIE  169 (170)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99988763

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.96  E-value=1e-27  Score=173.52  Aligned_cols=135  Identities=21%  Similarity=0.342  Sum_probs=116.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .++..+.+.+||+||++.+..++..+++.+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            45689999999999999999999997                     233447899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  171 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  171 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998888543 235899999999999975  45555665554        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       172 ~l~~~i~  178 (196)
T 3tkl_A          172 TMAAEIK  178 (196)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.96  E-value=5e-28  Score=175.43  Aligned_cols=137  Identities=13%  Similarity=0.220  Sum_probs=114.5

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      ....+.+||+++|.+|||||||++++.+                    .++..+.+.+||++|++.+..++..+++++|+
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            3366789999999999999999999997                    23345678999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH---------HhhhccCCCH
Q psy11510         93 LIWVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS---------EKATKVKLNK  158 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~---------~~sa~~~~~v  158 (171)
                      +++|||++++.+|+.+ ..|+..+...  .+++|+++|+||+|+.+    .+..+++.++.         ++||++|.|+
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  175 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL  175 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence            9999999999999997 5666666432  46899999999999964    36666666554         5699999999


Q ss_pred             HHHHHHHHHHHhC
Q psy11510        159 QSKFQVLLNEVSN  171 (171)
Q Consensus       159 ~~~f~~l~~~i~~  171 (171)
                      +++|+.+++.+++
T Consensus       176 ~~l~~~l~~~i~~  188 (194)
T 3reg_A          176 NEVFEKSVDCIFS  188 (194)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.96  E-value=2.2e-28  Score=178.47  Aligned_cols=136  Identities=15%  Similarity=0.204  Sum_probs=113.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|.+|||||||++++.+                    .+...+.+.+||+||++.+..++..+++++|+++
T Consensus        21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            46789999999999999999999997                    3345678899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++.+++.+..|+..+.......++|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+.
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  180 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999997765567899999999999974  45666665554        6799999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       181 l~~~i~  186 (201)
T 3oes_A          181 VIQEIA  186 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.96  E-value=8.9e-28  Score=172.15  Aligned_cols=136  Identities=21%  Similarity=0.318  Sum_probs=117.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|+.|||||||++++.+                    .+...+.+.+||+||++.+..++..+++.+|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            45789999999999999999999986                    2333468999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++.+++.+..|+..+.......++|+++|+||+|+.+  .+..+++.++.        ++||++|.|++++|+.
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  174 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  174 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            9999999999999999999987765556899999999999975  46666666665        5699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       175 l~~~i~  180 (187)
T 2a9k_A          175 LMREIR  180 (187)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=3.8e-28  Score=175.76  Aligned_cols=135  Identities=20%  Similarity=0.327  Sum_probs=117.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|.+|||||||++++.+                     .....+.+.+||++|++.+..++..+++++|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            45789999999999999999999997                     344678899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+++.+..|+..+... ...++|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE  178 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            9999999999999999998888553 346899999999999965  45666665554        669999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       179 ~l~~~i~  185 (191)
T 3dz8_A          179 RLVDAIC  185 (191)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=7.8e-28  Score=176.19  Aligned_cols=135  Identities=23%  Similarity=0.301  Sum_probs=116.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .++..+.+.+||++|++++..++..+++++|++
T Consensus        23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  102 (201)
T 2ew1_A           23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL  102 (201)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence            55689999999999999999999986                     223346899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+  .+..+++..+.        ++||++|.|++++|+
T Consensus       103 i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  181 (201)
T 2ew1_A          103 ILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFL  181 (201)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999998888543 235799999999999974  46666666554        679999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       182 ~l~~~i~  188 (201)
T 2ew1_A          182 DLACRLI  188 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.95  E-value=5.6e-28  Score=174.87  Aligned_cols=135  Identities=23%  Similarity=0.345  Sum_probs=117.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|+.|||||||++++.+                     .+...+.+.+||++|++.+..++..+++++|++
T Consensus        18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   97 (191)
T 2a5j_A           18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA   97 (191)
T ss_dssp             TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence            56789999999999999999999986                     233457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+  .+..+++..+.        ++||++|.|++++|+
T Consensus        98 i~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  176 (191)
T 2a5j_A           98 LLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI  176 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999888653 236899999999999975  56666666654        579999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       177 ~l~~~i~  183 (191)
T 2a5j_A          177 NTAKEIY  183 (191)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998775

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.95  E-value=9.9e-28  Score=172.24  Aligned_cols=135  Identities=19%  Similarity=0.273  Sum_probs=116.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .+...+.+.+||+||++.+...+..+++++|++
T Consensus         7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   86 (186)
T 2bme_A            7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA   86 (186)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence            45689999999999999999999986                     223347899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+  .++.++...+.        ++||++|.|++++|+
T Consensus        87 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  165 (186)
T 2bme_A           87 LLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV  165 (186)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence            99999999999999999988875432 36899999999999964  46666666554        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       166 ~l~~~~~  172 (186)
T 2bme_A          166 QCARKIL  172 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.95  E-value=5.7e-28  Score=169.89  Aligned_cols=134  Identities=16%  Similarity=0.271  Sum_probs=115.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++.+                    .+.....+.+||+||++.+..++..+++++|++++|
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            568999999999999999999986                    233346689999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      +|++++.+++.+..|+..+.+.....+.|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+.++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  161 (167)
T 1kao_A           82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHH
Confidence            99999999999999999887765557899999999999864  45566655554        569999999999999998


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       162 ~~~~  165 (167)
T 1kao_A          162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8763

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.95  E-value=3.8e-28  Score=174.13  Aligned_cols=135  Identities=20%  Similarity=0.383  Sum_probs=92.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .++..+.+.+||+||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI   84 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence            35689999999999999999999987                     223347899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+|+.+..|+..+... ..+++|+++|+||+|+.+  .++.+++..+.        ++||++|.|++++|+
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  163 (183)
T 2fu5_C           85 MLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFF  163 (183)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999888653 235899999999999976  45666666665        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       164 ~l~~~i~  170 (183)
T 2fu5_C          164 TLARDIK  170 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=1.2e-27  Score=168.96  Aligned_cols=133  Identities=19%  Similarity=0.264  Sum_probs=114.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      +.+||+++|++|||||||++++.+                     .+...+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            578999999999999999999987                     23345689999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-----CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-----ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      |+|++++.+++.+..|+..+.... .++.|+++|+||+|+.+     .+..++..++.        ++||++|.|++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999998886543 36899999999999864     35555555544        56999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.+.
T Consensus       161 ~~l~~~i~  168 (170)
T 1ek0_A          161 LGIGEKIP  168 (170)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHHHh
Confidence            99987654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.95  E-value=7.3e-28  Score=174.62  Aligned_cols=135  Identities=23%  Similarity=0.370  Sum_probs=115.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|..|||||||++++.+                     .+...+.+.+||++|++.+...+..+++++|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            55689999999999999999999987                     223457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKF  162 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f  162 (171)
                      ++|+|++++.+++.+..|+..+.. ....++|+++|+||+|+.+  .+..+++.++.         ++||++|.|++++|
T Consensus       103 ilV~D~~~~~s~~~~~~~~~~i~~-~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  181 (192)
T 2il1_A          103 ILVYDITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF  181 (192)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHH-hcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999888777643 3345899999999999975  45666665554         56999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.+.
T Consensus       182 ~~l~~~i~  189 (192)
T 2il1_A          182 LKLVDDIL  189 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998875

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.95  E-value=1.7e-27  Score=168.32  Aligned_cols=134  Identities=20%  Similarity=0.262  Sum_probs=115.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .+.+||+++|++|||||||++++.+                     .......+.+||+||++.+...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            4679999999999999999999987                     2334577899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|+|++++.+++.+..|+..+... ..++.|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+.
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            999999999999999998888553 346899999999999975  45566666654        5699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       163 i~~~i~  168 (170)
T 1z0j_A          163 ISRRIP  168 (170)
T ss_dssp             HHHHCC
T ss_pred             HHHHHh
Confidence            998764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.95  E-value=4.3e-28  Score=178.99  Aligned_cols=135  Identities=16%  Similarity=0.218  Sum_probs=114.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|++|||||||++++..                    .+...+.+.+||++|++++..++..+++++|+++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            56789999999999999999999986                    3445678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHH-HHHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510         95 WVVDSADKRRLED-CARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK  150 (171)
Q Consensus        95 ~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~  150 (171)
                      +|||++++.+|+. +..|+..+...  .+++|+++|+||+|+.+              .++.+++..+.         ++
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  181 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEG  181 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEe
Confidence            9999999999998 67888888554  36899999999999964              36666666554         67


Q ss_pred             hhccCCC-HHHHHHHHHHHHhC
Q psy11510        151 ATKVKLN-KQSKFQVLLNEVSN  171 (171)
Q Consensus       151 sa~~~~~-v~~~f~~l~~~i~~  171 (171)
                      ||++|.| ++++|+.+++.+++
T Consensus       182 SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          182 SAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCcccHHHHHHHHHHHHhc
Confidence            9999998 99999999988753

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.6e-27  Score=170.13  Aligned_cols=135  Identities=24%  Similarity=0.376  Sum_probs=108.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      ..+.+||+++|.+|||||||++++.+                      .++..+.+.+||+||++.+...+..+++++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            56789999999999999999999986                      22334689999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      +++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999988886543 26899999999999975  34566665554        56999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.+.
T Consensus       166 ~~l~~~~~  173 (180)
T 2g6b_A          166 TAIAKELK  173 (180)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.95  E-value=8.9e-28  Score=173.43  Aligned_cols=136  Identities=18%  Similarity=0.298  Sum_probs=113.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchh-HHHHHhhhCCCE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLR-SYWRNYFESTDG   92 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~   92 (171)
                      ..+.+||+++|.+|||||||++++.+                     .+...+.+.+||++|++++. .++..+++++|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            45789999999999999999999986                     22335789999999999998 889999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccC---CCHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVK---LNKQ  159 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~---~~v~  159 (171)
                      +++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+  .+..++...+.        ++||++|   .|++
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999987765457899999999999965  45666666654        5699999   9999


Q ss_pred             HHHHHHHHHHh
Q psy11510        160 SKFQVLLNEVS  170 (171)
Q Consensus       160 ~~f~~l~~~i~  170 (171)
                      ++|+.+++.+.
T Consensus       177 ~l~~~l~~~i~  187 (189)
T 1z06_A          177 AIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHC----
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.95  E-value=1.7e-27  Score=169.76  Aligned_cols=137  Identities=19%  Similarity=0.238  Sum_probs=114.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cc--c-CceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IM--T-FRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~--~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      ..+.+||+++|++|||||||++++.+                   +.  . ..+.+.+||+||++.+...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45789999999999999999999987                   11  1 24789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccc-cCCCe-EEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEER-LAGAT-LLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQS  160 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p-~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~  160 (171)
                      +++|+|++++.+++.+..|+..+..... ..+.| +++|+||+|+.+  .++.+++..+.        ++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999988888754311 12444 899999999975  45666666554        569999999999


Q ss_pred             HHHHHHHHHhC
Q psy11510        161 KFQVLLNEVSN  171 (171)
Q Consensus       161 ~f~~l~~~i~~  171 (171)
                      +|+.+++.+++
T Consensus       163 l~~~l~~~~~~  173 (178)
T 2hxs_A          163 CFQKVAAEILG  173 (178)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988753

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.95  E-value=2.5e-27  Score=170.70  Aligned_cols=136  Identities=18%  Similarity=0.317  Sum_probs=117.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------------cccC---------ceEEEEEecCCccchhHHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------IMTF---------RFKLNIWDVGGQKSLRSYW   83 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~---------~~~~~i~d~~g~~~~~~~~   83 (171)
                      ..+.+||+++|++|||||||++++.+                      ....         .+.+.+||+||++.+...+
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            56789999999999999999999986                      1111         4689999999999999999


Q ss_pred             HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhc
Q psy11510         84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATK  153 (171)
Q Consensus        84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~  153 (171)
                      ..+++++|++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+  .+..+++.++.        ++||+
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  167 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA  167 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence            999999999999999999999999999999887655446899999999999976  56666666655        56999


Q ss_pred             cCCCHHHHHHHHHHHHh
Q psy11510        154 VKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~i~  170 (171)
                      +|.|++++|+.+++.+.
T Consensus       168 ~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          168 NGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.95  E-value=6.7e-28  Score=170.02  Aligned_cols=134  Identities=16%  Similarity=0.294  Sum_probs=115.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .+.+||+++|++|||||||++++.+                     .+...+.+.+||+||++.+..++..+++++|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            4689999999999999999999987                     2233568999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|+|++++.+++.+..|+..+....  ++.|+++|+||+|+.+  .+..+++..+.        ++||++|.|++++|+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  160 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY  160 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998886543  6899999999999965  45666666655        5699999999999999


Q ss_pred             HHHHHhC
Q psy11510        165 LLNEVSN  171 (171)
Q Consensus       165 l~~~i~~  171 (171)
                      +++.+++
T Consensus       161 l~~~~~~  167 (168)
T 1z2a_A          161 LAEKHLQ  167 (168)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9988764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=170.21  Aligned_cols=134  Identities=24%  Similarity=0.365  Sum_probs=116.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .++..+.+.+||+||++.+...+..+++++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            56789999999999999999999987                     223347899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+...  .+++|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN  163 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            9999999999999999999988654  36899999999999976  45556555554        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+.+.+.
T Consensus       164 ~l~~~~~  170 (181)
T 3tw8_B          164 CITELVL  170 (181)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.95  E-value=4.5e-27  Score=164.95  Aligned_cols=134  Identities=15%  Similarity=0.277  Sum_probs=115.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++.+                    .+...+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            468999999999999999999986                    223456789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      +|++++.+++.+..|+..+.......++|+++|+||+|+.+ ....+++.++.        ++||++|.|++++|+.+++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  161 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR  161 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999998887654445899999999999976 45566665554        5699999999999999998


Q ss_pred             HHh
Q psy11510        168 EVS  170 (171)
Q Consensus       168 ~i~  170 (171)
                      .+.
T Consensus       162 ~~~  164 (166)
T 2ce2_X          162 EIR  164 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.95  E-value=7.5e-28  Score=173.96  Aligned_cols=136  Identities=14%  Similarity=0.172  Sum_probs=111.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|.+|||||||++++.+                    .+...+.+.+||++|++.+..+ ..+++.+|+++
T Consensus        18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            56789999999999999999999986                    2344578899999999998875 67899999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhh-ccCCCHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEER--LAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKAT-KVKLNKQSK  161 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa-~~~~~v~~~  161 (171)
                      +|||++++.+|+.+..|+..+.....  ..++|+++|+||+|+.+  .++.+++.++.        ++|| ++|.|++++
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l  176 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV  176 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence            99999999999999999988865422  25899999999999965  46667666665        6699 899999999


Q ss_pred             HHHHHHHHhC
Q psy11510        162 FQVLLNEVSN  171 (171)
Q Consensus       162 f~~l~~~i~~  171 (171)
                      |+.+++.+.+
T Consensus       177 f~~l~~~i~~  186 (187)
T 3c5c_A          177 FHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999988753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=2.5e-27  Score=171.59  Aligned_cols=135  Identities=12%  Similarity=0.169  Sum_probs=115.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|+.|||||||++++.+                    .+...+.+.+||++|++++..++..+++++|+++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            45789999999999999999999986                    2334578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510         95 WVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK  150 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~  150 (171)
                      +|||++++.+|+.+. .|+..+...  .+++|+++|+||+|+.+              .++.++..++.         ++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  172 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  172 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999987 677777543  35899999999999975              35555555543         56


Q ss_pred             hhccCCCHHHHHHHHHHHHhC
Q psy11510        151 ATKVKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       151 sa~~~~~v~~~f~~l~~~i~~  171 (171)
                      ||++|.|++++|+.+++.++.
T Consensus       173 Sa~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          173 SALTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999998763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.8e-27  Score=172.47  Aligned_cols=135  Identities=20%  Similarity=0.264  Sum_probs=117.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|.+|||||||++++.+                     .+.....+.+||+||++++...+..+++++|++
T Consensus        20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   99 (192)
T 2fg5_A           20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA   99 (192)
T ss_dssp             -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence            56789999999999999999999986                     233567899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+... ..+++|+++|+||+|+.+  .+..+++.++.        ++||++|.|++++|+
T Consensus       100 ilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (192)
T 2fg5_A          100 VIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ  178 (192)
T ss_dssp             EEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999999999998888553 245899999999999974  56677777765        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       179 ~l~~~i~  185 (192)
T 2fg5_A          179 GISRQIP  185 (192)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHH
Confidence            9988653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.95  E-value=1.5e-27  Score=173.82  Aligned_cols=135  Identities=19%  Similarity=0.263  Sum_probs=111.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .+...+.+.+||+||++.+...+..+++++|++
T Consensus        25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  104 (199)
T 2p5s_A           25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV  104 (199)
T ss_dssp             ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred             cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence            56789999999999999999999986                     233457799999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC--------CCCCHHHHHHHH--------HhhhccCCC
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE--------GALTPEDIKNVS--------EKATKVKLN  157 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~--------~~~~~~~~~~~~--------~~sa~~~~~  157 (171)
                      ++|||++++.+++.+..|+..+... ...++|+++|+||+|+.        ..+..++...+.        ++||++|.|
T Consensus       105 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          105 LLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999988877443 33579999999999985        245566655544        679999999


Q ss_pred             HHHHHHHHHHHHh
Q psy11510        158 KQSKFQVLLNEVS  170 (171)
Q Consensus       158 v~~~f~~l~~~i~  170 (171)
                      ++++|+.+++.+.
T Consensus       184 v~el~~~l~~~i~  196 (199)
T 2p5s_A          184 IVEAVLHLAREVK  196 (199)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998875

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.95  E-value=2.5e-27  Score=169.15  Aligned_cols=130  Identities=15%  Similarity=0.210  Sum_probs=107.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      .+.+||+++|++|||||||++++.+                   .++..+.+.+||++|+++     ..+++++|++++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv   79 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV   79 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence            5789999999999999999999986                   233457789999999987     4678889999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCC----CCCCHHHHHHHH---------HhhhccCCCHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQE--ERLAGATLLVFANKQDIE----GALTPEDIKNVS---------EKATKVKLNKQSK  161 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~Dl~----~~~~~~~~~~~~---------~~sa~~~~~v~~~  161 (171)
                      ||++++.+|+.+..|+..+...  ...+++|+++|+||+|+.    ..++.+++.++.         ++||++|.|++++
T Consensus        80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l  159 (178)
T 2iwr_A           80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRV  159 (178)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHH
Confidence            9999999999999876554332  223689999999999994    246666666554         5699999999999


Q ss_pred             HHHHHHHHh
Q psy11510        162 FQVLLNEVS  170 (171)
Q Consensus       162 f~~l~~~i~  170 (171)
                      |+.+++.++
T Consensus       160 f~~l~~~~~  168 (178)
T 2iwr_A          160 FQEVAQKVV  168 (178)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998775

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.95  E-value=6.9e-28  Score=176.47  Aligned_cols=138  Identities=12%  Similarity=0.155  Sum_probs=110.9

Q ss_pred             cCCCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCC
Q psy11510         31 HRPQVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFEST   90 (171)
Q Consensus        31 ~~~~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~   90 (171)
                      ++....+.+||+++|.+|||||||++++..                    .++..+.+.+||+||++.+...+..+++++
T Consensus        23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~  102 (204)
T 4gzl_A           23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT  102 (204)
T ss_dssp             -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence            344467889999999999999999999986                    344567788999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH-------
Q psy11510         91 DGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS-------  148 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~-------  148 (171)
                      |++++|||++++.+++.+. .|+..+....  +++|+++|+||+|+.+.              ++.++...+.       
T Consensus       103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  180 (204)
T 4gzl_A          103 DVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK  180 (204)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence            9999999999999999987 6776664432  68999999999998653              4444544443       


Q ss_pred             --HhhhccCCCHHHHHHHHHHHHh
Q psy11510        149 --EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       149 --~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                        ++||++|.|++++|+.+++.++
T Consensus       181 ~~~~SA~~g~gi~~l~~~l~~~~l  204 (204)
T 4gzl_A          181 YLECSALTQRGLKTVFDEAIRAVL  204 (204)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTTC
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHhC
Confidence              5699999999999999998753

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=3.7e-27  Score=174.07  Aligned_cols=136  Identities=13%  Similarity=0.163  Sum_probs=111.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccc-hhHHHHHhhhCCC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKS-LRSYWRNYFESTD   91 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~   91 (171)
                      ..+.+||+++|++|||||||++++.+                      +++..+.+.+||++|++. +..+.+.+++.++
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            45679999999999999999999974                      223345678999999887 5667778889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHH
Q psy11510         92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSK  161 (171)
Q Consensus        92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~  161 (171)
                      ++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+  .+..++...+.        ++||++|.||+++
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el  193 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  193 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999999988876543346899999999999964  45666554432        6799999999999


Q ss_pred             HHHHHHHHh
Q psy11510        162 FQVLLNEVS  170 (171)
Q Consensus       162 f~~l~~~i~  170 (171)
                      |+.+++.+.
T Consensus       194 f~~l~~~i~  202 (211)
T 2g3y_A          194 FEGIVRQVR  202 (211)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998763

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=1.5e-27  Score=173.28  Aligned_cols=135  Identities=19%  Similarity=0.223  Sum_probs=115.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|.+|||||||++++.+                    .+...+.+.+||++|++. ...+..+++.+|+++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            46789999999999999999999986                    233457799999999988 788999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCC-CHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKL-NKQSKFQ  163 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~-~v~~~f~  163 (171)
                      +|||++++.+++.+..|+..+.......++|+++|+||+|+.+  .++.+++.++.        ++||++|. |++++|+
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            9999999999999999988887655456899999999999975  46666666554        56999999 9999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       184 ~l~~~i~  190 (196)
T 2atv_A          184 ELCREVR  190 (196)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.95  E-value=6e-27  Score=170.69  Aligned_cols=134  Identities=21%  Similarity=0.340  Sum_probs=115.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .+.+||+++|++|||||||++++.+                     .+...+.+.+||+||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            4679999999999999999999987                     2234578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+  .+..+++..+.        ++||++|.|++++|+.
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER  164 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence            999999999999999998888543 245899999999999976  45566665554        5699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       165 l~~~i~  170 (203)
T 1zbd_A          165 LVDVIC  170 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.95  E-value=2.4e-27  Score=167.48  Aligned_cols=133  Identities=24%  Similarity=0.379  Sum_probs=114.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++.+                     .+...+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            468999999999999999999986                     23345789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      |+|++++.+++.+..|+..+.... .+++|+++|+||+|+.+ ....++..++.        ++||++|.|++++|+.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999988886542 35899999999999965 45566655554        569999999999999998


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.+.
T Consensus       161 ~~~~  164 (170)
T 1g16_A          161 KLIQ  164 (170)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.95  E-value=2.3e-27  Score=169.35  Aligned_cols=136  Identities=17%  Similarity=0.290  Sum_probs=105.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cc-cCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      ..+.+||+++|++|||||||++++.+                     .+ .....+.+||+||++.+...+..+++++|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            45789999999999999999999987                     22 335789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCC---CCCHHHHHHHH---------HhhhccCCC
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEG---ALTPEDIKNVS---------EKATKVKLN  157 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~---------~~sa~~~~~  157 (171)
                      +++|+|++++.+++.+..|+..+.....   ..++|+++|+||+|+.+   .+..+++.++.         ++||++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999888865432   26899999999999954   35666666655         459999999


Q ss_pred             HHHHHHHHHHHHh
Q psy11510        158 KQSKFQVLLNEVS  170 (171)
Q Consensus       158 v~~~f~~l~~~i~  170 (171)
                      ++++|+.+++.++
T Consensus       165 i~~l~~~l~~~~~  177 (182)
T 1ky3_A          165 VDTAFEEIARSAL  177 (182)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998775

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.95  E-value=2e-27  Score=175.08  Aligned_cols=136  Identities=16%  Similarity=0.312  Sum_probs=116.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccC----------ceEEEEEecCCccchhHHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTF----------RFKLNIWDVGGQKSLRSYW   83 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~----------~~~~~i~d~~g~~~~~~~~   83 (171)
                      ..+.+||+++|.+|||||||++++.+                     .+..          .+.+.+||++|++.+...+
T Consensus        22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~  101 (217)
T 2f7s_A           22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT  101 (217)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred             cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence            45689999999999999999999986                     1122          5789999999999999999


Q ss_pred             HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhc
Q psy11510         84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATK  153 (171)
Q Consensus        84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~  153 (171)
                      ..+++++|++++|||++++.+++.+..|+..+.......++|+++|+||+|+.+  .+..+++.++.        ++||+
T Consensus       102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~  181 (217)
T 2f7s_A          102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA  181 (217)
T ss_dssp             HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred             HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence            999999999999999999999999999988876544346899999999999976  45666666655        56999


Q ss_pred             cCCCHHHHHHHHHHHHh
Q psy11510        154 VKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~i~  170 (171)
                      +|.|++++|+.+++.+.
T Consensus       182 ~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          182 TGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             TTBTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999998764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.95  E-value=2.8e-27  Score=171.21  Aligned_cols=135  Identities=23%  Similarity=0.329  Sum_probs=116.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|.+|||||||++++.+                     .....+.+.+||+||++++..++..+++++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            56689999999999999999999987                     223456789999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+  .+..+++..+.        ++||++|.|++++|+
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  180 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFE  180 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999999999888653 246899999999999975  45666666654        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.++
T Consensus       181 ~l~~~i~  187 (193)
T 2oil_A          181 TVLKEIF  187 (193)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.95  E-value=2e-27  Score=169.19  Aligned_cols=135  Identities=16%  Similarity=0.306  Sum_probs=114.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      +.+.+||+++|+.|||||||++++.+                     .+...+.+.+||+||++.+...+..+++++|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            55779999999999999999999986                     223346899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+.+  .+..++.....        ++||++|.|++++|+
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~  169 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFR  169 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999998886532 36899999999999965  45566655554        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       170 ~l~~~~~  176 (179)
T 2y8e_A          170 RVAAALP  176 (179)
T ss_dssp             HHHHTCC
T ss_pred             HHHHHHh
Confidence            9987653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.95  E-value=1.8e-27  Score=171.19  Aligned_cols=135  Identities=16%  Similarity=0.229  Sum_probs=113.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|++|||||||++++.+                    .+...+.+.+||+||++.+..+++.+++++|+++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   83 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   83 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence            45789999999999999999999987                    2344678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510         95 WVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK  150 (171)
Q Consensus        95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~  150 (171)
                      +|||++++.+|+.+ ..|+..+...  .+++|+++|+||+|+.+              .++.+++.++.         ++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            99999999999998 6777777443  36899999999999973              35666655554         56


Q ss_pred             hhc-cCCCHHHHHHHHHHHHhC
Q psy11510        151 ATK-VKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       151 sa~-~~~~v~~~f~~l~~~i~~  171 (171)
                      ||+ ++.|++++|+.+++.+++
T Consensus       162 Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHHHHHT
T ss_pred             eecCCCcCHHHHHHHHHHHHhc
Confidence            998 689999999999998864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.95  E-value=3.1e-27  Score=170.57  Aligned_cols=135  Identities=22%  Similarity=0.354  Sum_probs=115.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|.+|||||||++++.+                     .....+.+.+||++|++.+...+..+++++|++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            45679999999999999999999987                     223457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+++.+..|+..+... ...++|+++|+||+|+.+  .+..+++.++.        ++||++|.|++++|+
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  177 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE  177 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            9999999999999999998888543 245899999999999975  45566666554        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       178 ~l~~~i~  184 (189)
T 2gf9_A          178 RLVDVIC  184 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.95  E-value=4.9e-27  Score=169.40  Aligned_cols=136  Identities=14%  Similarity=0.230  Sum_probs=105.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|..|||||||++++.+                    .+...+.+.+||++|++.+...+..+++.+|+++
T Consensus        18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            55779999999999999999999986                    2233467899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      +|+|+++..+++.+..|+..+.......++|+++|+||+|+.+ ....+++.++.        ++||++|.|++++|+.+
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  177 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL  177 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999988886554445899999999999976 45666666665        56999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       178 ~~~~~  182 (190)
T 3con_A          178 VREIR  182 (190)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.95  E-value=2e-27  Score=173.38  Aligned_cols=135  Identities=19%  Similarity=0.266  Sum_probs=116.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|..|||||||++++.+                     .+...+.+.+||++|++.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  101 (200)
T 2o52_A           22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA  101 (200)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence            46789999999999999999999986                     223347899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+++.+..|+..+.... .+++|+++|+||+|+.+  .++.+++..+.        ++||++|.|++++|+
T Consensus       102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  180 (200)
T 2o52_A          102 LLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL  180 (200)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999988885532 36899999999999964  46666666554        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.++
T Consensus       181 ~l~~~i~  187 (200)
T 2o52_A          181 KCARTIL  187 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998775

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.95  E-value=5.1e-27  Score=171.58  Aligned_cols=135  Identities=21%  Similarity=0.321  Sum_probs=116.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .+...+.+.+||+||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            45689999999999999999999986                     223346899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+++.+..|+..+.... .++.|+++|+||+|+.+  .+..+++..+.        ++||++|.|++++|+
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  163 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL  163 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999988885432 45899999999999976  45666666554        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       164 ~l~~~i~  170 (206)
T 2bcg_Y          164 TMARQIK  170 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=5e-27  Score=183.95  Aligned_cols=137  Identities=34%  Similarity=0.576  Sum_probs=117.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      .++.+||+++|.+|||||||++++..                +....+.+.+|||||++.+..++..+++.+|++++|||
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D  241 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD  241 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            45678999999999999999999987                44567889999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l  165 (171)
                      ++++.+|+.+..|+..++.....+++|+++|+||+|+.+....+++....             ++||++|.|++++|+.+
T Consensus       242 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l  321 (329)
T 3o47_A          242 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWL  321 (329)
T ss_dssp             TTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHH
Confidence            99999999999999999887766799999999999998877776666654             56999999999999999


Q ss_pred             HHHHhC
Q psy11510        166 LNEVSN  171 (171)
Q Consensus       166 ~~~i~~  171 (171)
                      ++.+.+
T Consensus       322 ~~~l~~  327 (329)
T 3o47_A          322 SNQLRN  327 (329)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            988753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.95  E-value=1.4e-26  Score=167.76  Aligned_cols=133  Identities=20%  Similarity=0.298  Sum_probs=113.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCc----------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFR----------------------------   65 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~----------------------------   65 (171)
                      ..+.+||+++|++|||||||++++.+                     .+...                            
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH   83 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence            35689999999999999999999987                     11112                            


Q ss_pred             ---------eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         66 ---------FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        66 ---------~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                               ..+.+||+||++.+...+..+++.+|++++|+|++++.+++.+..|+..+....   +.|+++|+||+|+.
T Consensus        84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~  160 (208)
T 3clv_A           84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKN  160 (208)
T ss_dssp             -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC
T ss_pred             ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcc
Confidence                     789999999999999999999999999999999999999999999998886542   49999999999954


Q ss_pred             C-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        137 G-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       137 ~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      . .+..+++.+++        ++||++|.|++++|+.+++.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  203 (208)
T 3clv_A          161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY  203 (208)
T ss_dssp             -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence            3 56677777765        5699999999999999998765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=5.9e-27  Score=169.83  Aligned_cols=137  Identities=20%  Similarity=0.223  Sum_probs=113.3

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      +...+.+||+++|.+|||||||++++.+                    .+...+.+.+||+||++.+..++..+++++|+
T Consensus         3 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   82 (199)
T 2gf0_A            3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA   82 (199)
T ss_dssp             --CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSE
T ss_pred             ccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCE
Confidence            3456789999999999999999999986                    22335678999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEER-LAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      +++|||++++.+++.+..|+..+..... .+++|+++|+||+|+.+ .+..++...+.        ++||++|.|++++|
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  162 (199)
T 2gf0_A           83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF  162 (199)
T ss_dssp             EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence            9999999999999998888766644321 25789999999999976 45555555543        56999999999999


Q ss_pred             HHHHHHH
Q psy11510        163 QVLLNEV  169 (171)
Q Consensus       163 ~~l~~~i  169 (171)
                      +.+++.+
T Consensus       163 ~~l~~~~  169 (199)
T 2gf0_A          163 QELLTLE  169 (199)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998865

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.9e-27  Score=175.24  Aligned_cols=135  Identities=24%  Similarity=0.365  Sum_probs=113.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .+...+.+.+||+||++++..++..+++.+|++
T Consensus        10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v   89 (223)
T 3cpj_B           10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA   89 (223)
T ss_dssp             CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred             CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence            45689999999999999999999987                     223347899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+  .++.+++..+.        ++||++|.|++++|+
T Consensus        90 ilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  168 (223)
T 3cpj_B           90 LIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE  168 (223)
T ss_dssp             EEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999998885542 35899999999999975  46666666665        569999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       169 ~l~~~i~  175 (223)
T 3cpj_B          169 ELINTIY  175 (223)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9998875

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.95  E-value=6.2e-27  Score=170.83  Aligned_cols=136  Identities=18%  Similarity=0.287  Sum_probs=114.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .+...+.+.+||+||++.+..++..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45789999999999999999999987                     233457899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCC-CCCHHHHHHHH---------HhhhccCCCHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEG-ALTPEDIKNVS---------EKATKVKLNKQS  160 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~---------~~sa~~~~~v~~  160 (171)
                      ++|+|++++.+++.+..|+..+.....   ..++|+++|+||+|+.+ ....+++..+.         ++||++|.|+++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  164 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  164 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            999999999999999999888765432   24789999999999975 45566666554         469999999999


Q ss_pred             HHHHHHHHHh
Q psy11510        161 KFQVLLNEVS  170 (171)
Q Consensus       161 ~f~~l~~~i~  170 (171)
                      +|+.+++.+.
T Consensus       165 l~~~l~~~~~  174 (207)
T 1vg8_A          165 AFQTIARNAL  174 (207)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.95  E-value=2.5e-27  Score=169.41  Aligned_cols=135  Identities=18%  Similarity=0.256  Sum_probs=107.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .++.+||+++|++|||||||++++..                    .++..+.+.+||+||++++...+..+++++|+++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            35689999999999999999999986                    2334566789999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC------------CCHHHHHHHH---------Hhhh
Q psy11510         95 WVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA------------LTPEDIKNVS---------EKAT  152 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~------------~~~~~~~~~~---------~~sa  152 (171)
                      +|+|++++.+++.+. .|+..+...  .+++|+++|+||+|+.+.            +..++..++.         ++||
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  162 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS  162 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence            999999999999987 677777443  258999999999998652            2444444443         5699


Q ss_pred             ccCCCHHHHHHHHHHHHhC
Q psy11510        153 KVKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       153 ~~~~~v~~~f~~l~~~i~~  171 (171)
                      ++|.|++++|+.+++.+++
T Consensus       163 ~~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          163 KSQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.95  E-value=7.7e-27  Score=170.33  Aligned_cols=135  Identities=16%  Similarity=0.227  Sum_probs=112.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ....+||+++|.+|||||||++++.+                    .++..+.+.+||+||++.+..++..+++++|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            35689999999999999999999987                    2234568999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hh
Q psy11510         95 WVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EK  150 (171)
Q Consensus        95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~  150 (171)
                      +|||++++.+++.+ ..|+..+...  .+++|+++|+||+|+.+.              +..++...+.         ++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            99999999999998 5666666432  358999999999999753              4455554443         56


Q ss_pred             hhccCCCHHHHHHHHHHHHhC
Q psy11510        151 ATKVKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       151 sa~~~~~v~~~f~~l~~~i~~  171 (171)
                      ||++|.|++++|+.+++.+++
T Consensus       180 SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999998864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.95  E-value=4.6e-27  Score=171.10  Aligned_cols=134  Identities=13%  Similarity=0.171  Sum_probs=111.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|.+|||||||++++.+                    .++..+.+.+||++|++++..++..+++++|+++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            66789999999999999999999986                    2233467889999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510         95 WVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK  150 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~  150 (171)
                      +|||++++.+++.+. .|+..+...  .+++|+++|+||+|+.+              .+..++...+.         ++
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  174 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC  174 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence            999999999999987 687777543  25899999999999864              34555554443         66


Q ss_pred             hhccCCCHHHHHHHHHHHHh
Q psy11510        151 ATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       151 sa~~~~~v~~~f~~l~~~i~  170 (171)
                      ||++|.|++++|+.+++.++
T Consensus       175 Sa~~g~gi~~l~~~l~~~~~  194 (201)
T 2q3h_A          175 SALTQKNLKEVFDAAIVAGI  194 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHHHHh
Confidence            99999999999999998775

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.95  E-value=4.9e-27  Score=168.30  Aligned_cols=134  Identities=13%  Similarity=0.182  Sum_probs=111.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      .+.+||+++|++|||||||++++.+                    .++..+.+.+||+||++.+...+..+++++|++++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            4679999999999999999999986                    23445778899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhh
Q psy11510         96 VVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKA  151 (171)
Q Consensus        96 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~s  151 (171)
                      |||++++.+++.+. .|+..+...  .+++|+++|+||+|+.+              .++.++...+.         ++|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            99999999999987 677777543  24899999999999864              23444444433         569


Q ss_pred             hccCCCHHHHHHHHHHHHhC
Q psy11510        152 TKVKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       152 a~~~~~v~~~f~~l~~~i~~  171 (171)
                      |++|.|++++|+.+++.+++
T Consensus       161 a~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSC
T ss_pred             CCCccCHHHHHHHHHHHHhc
Confidence            99999999999999988753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.95  E-value=4.3e-27  Score=172.66  Aligned_cols=134  Identities=16%  Similarity=0.221  Sum_probs=112.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|++|||||||++++.+                    .+...+.+.+||++|++.+..++..+++++|+++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            45789999999999999999999987                    2345688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510         95 WVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK  150 (171)
Q Consensus        95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~  150 (171)
                      +|||++++.+|+.+ ..|+..+...  .++.|+++|+||+|+.+              .++.+++.++.         ++
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  182 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  182 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence            99999999999998 6787777443  35899999999999963              35556555544         56


Q ss_pred             hhc-cCCCHHHHHHHHHHHHh
Q psy11510        151 ATK-VKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       151 sa~-~~~~v~~~f~~l~~~i~  170 (171)
                      ||+ ++.|++++|+.+++.++
T Consensus       183 SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          183 SALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             CTTTCHHHHHHHHHHHHHHHH
T ss_pred             eeccCCcCHHHHHHHHHHHHh
Confidence            998 68999999999999876

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.95  E-value=5.8e-27  Score=172.74  Aligned_cols=134  Identities=17%  Similarity=0.205  Sum_probs=98.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|++|||||||++++.+                    .++..+.+.+||++|++.+..++..+++++|+++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            45689999999999999999999987                    2334568999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hh
Q psy11510         95 WVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EK  150 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~  150 (171)
                      +|||++++.+|+.+. .|+..+...  .+++|+++|+||+|+...              ++.++..++.         ++
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            999999999999987 677777443  368999999999999752              4444544443         66


Q ss_pred             hhccCCCHHHHHHHHHHHHh
Q psy11510        151 ATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       151 sa~~~~~v~~~f~~l~~~i~  170 (171)
                      ||++|.|++++|+.+++.++
T Consensus       189 SA~~g~gi~el~~~l~~~~~  208 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVAL  208 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999998875

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.95  E-value=2.5e-27  Score=175.23  Aligned_cols=134  Identities=16%  Similarity=0.239  Sum_probs=114.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|.+|||||||++++..                     .+...+.+.+||++|++.+..++..+++++|++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   91 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   91 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence            56789999999999999999999664                     334567899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      ++|||++++.+++.+..|+..+...  .+++|+++|+||+|+.+....++...+.        ++||++|.|++++|+.+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  169 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  169 (221)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH--STTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999998764  3589999999999997633222322222        67999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       170 ~~~l~  174 (221)
T 3gj0_A          170 ARKLI  174 (221)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.95  E-value=6e-27  Score=171.88  Aligned_cols=134  Identities=17%  Similarity=0.232  Sum_probs=111.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+.+||+++|++|||||||++++..                    .++..+.+.+||+||++.+..++..+++++|+++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            35789999999999999999999986                    2334578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC----------CCHHHHHHHH---------Hhhhcc
Q psy11510         95 WVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA----------LTPEDIKNVS---------EKATKV  154 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~----------~~~~~~~~~~---------~~sa~~  154 (171)
                      +|||++++.+|+.+. .|+..+...  .+++|+++|+||+|+.+.          ++.+++.++.         ++||++
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  163 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT  163 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence            999999999999987 777777543  258999999999998653          2455554443         569999


Q ss_pred             CCCHHHHHHHHHHHHh
Q psy11510        155 KLNKQSKFQVLLNEVS  170 (171)
Q Consensus       155 ~~~v~~~f~~l~~~i~  170 (171)
                      |.|++++|+.+++.+.
T Consensus       164 g~gi~~l~~~l~~~~~  179 (212)
T 2j0v_A          164 QQNVKAVFDTAIKVVL  179 (212)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHh
Confidence            9999999999998875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.95  E-value=7.6e-27  Score=165.03  Aligned_cols=133  Identities=17%  Similarity=0.204  Sum_probs=110.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++.+                    .+.....+.+||+||++.+..++..+++.+|++++|
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   81 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence            578999999999999999999987                    223346789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEE-RLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      +|++++.+++.+..|+..+.+.. ..+++|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+.+
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (172)
T 2erx_A           82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  161 (172)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHH
Confidence            99999999999888887775432 235799999999999865  45555554443        56999999999999999


Q ss_pred             HHHH
Q psy11510        166 LNEV  169 (171)
Q Consensus       166 ~~~i  169 (171)
                      ++.+
T Consensus       162 ~~~~  165 (172)
T 2erx_A          162 LNLE  165 (172)
T ss_dssp             HHTC
T ss_pred             HHHH
Confidence            8754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.94  E-value=5.2e-27  Score=171.09  Aligned_cols=135  Identities=13%  Similarity=0.170  Sum_probs=92.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-----------------------cccC--ceEEEEEecCCccchhHHHHHhhhCC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-----------------------IMTF--RFKLNIWDVGGQKSLRSYWRNYFEST   90 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-----------------------~~~~--~~~~~i~d~~g~~~~~~~~~~~~~~~   90 (171)
                      .+.+||+++|++|||||||++++.+                       .+..  .+.+.+||+||++.+...+..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            4679999999999999999999876                       2222  67899999999999999999999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhccc--cCCCeEEEEEeCCCCCC---CCCHHHHHHHH--------Hhhhcc-CC
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQEER--LAGATLLVFANKQDIEG---ALTPEDIKNVS--------EKATKV-KL  156 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~--------~~sa~~-~~  156 (171)
                      |++++|||++++.+++.+..|+..+.....  ..++|+++|+||+|+.+   .++.+++.++.        ++||++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999998866433  25899999999999975   46667776665        569999 99


Q ss_pred             CHHHHHHHHHHHHh
Q psy11510        157 NKQSKFQVLLNEVS  170 (171)
Q Consensus       157 ~v~~~f~~l~~~i~  170 (171)
                      |++++|+.+++.+.
T Consensus       178 gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          178 DADAPFLSIATTFY  191 (208)
T ss_dssp             --CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.94  E-value=6.8e-27  Score=172.30  Aligned_cols=135  Identities=21%  Similarity=0.231  Sum_probs=113.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------c-ccCceEEEEEecCCccchhHHHHHhhhCCCE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------I-MTFRFKLNIWDVGGQKSLRSYWRNYFESTDG   92 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~-~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   92 (171)
                      ....+||+++|.+|||||||++++.+                     . ....+.+.+||++|++.+..++..++.++|+
T Consensus         8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   87 (218)
T 4djt_A            8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG   87 (218)
T ss_dssp             --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred             ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence            56789999999999999999999995                     1 1223789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      +++|+|++++.+++.+..|+..+... ...++|+++|+||+|+.+  .+..+++..+.        ++||++|.|++++|
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           88 AILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999988888543 234699999999999976  45666665554        67999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.+.
T Consensus       167 ~~l~~~~~  174 (218)
T 4djt_A          167 LHLARIFT  174 (218)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998775

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.94  E-value=2.5e-26  Score=166.81  Aligned_cols=135  Identities=13%  Similarity=0.167  Sum_probs=108.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccc-hhHHHHHhhhCCCE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKS-LRSYWRNYFESTDG   92 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~-~~~~~~~~~~~~~~   92 (171)
                      .+.+||+++|++|||||||++++.+                      +++..+.+.+||++|++. ++.+++.+++.+|+
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            4679999999999999999999974                      233455678999999876 45567788899999


Q ss_pred             EEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         93 LIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        93 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      +++|||++++.+|+.+..|+..+......+++|+++|+||+|+..  .+..++...+.        ++||++|.|++++|
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf  163 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF  163 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence            999999999999999999888776543345899999999999964  45555544332        67999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+++.+.
T Consensus       164 ~~l~~~~~  171 (192)
T 2cjw_A          164 EGIVRQVR  171 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998763

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=2.2e-26  Score=168.61  Aligned_cols=135  Identities=16%  Similarity=0.233  Sum_probs=112.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ....+||+++|.+|||||||++++.+                    .+...+.+.+||+||++.+...+..+++++|+++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            35689999999999999999999987                    2333568999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHH-HHHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHHHHH---------Hh
Q psy11510         95 WVVDSADKRRLEDC-ARELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIKNVS---------EK  150 (171)
Q Consensus        95 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~~~~---------~~  150 (171)
                      +|||++++.+++.+ ..|+..+...  .+++|+++|+||+|+.+.              +..++...+.         ++
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            99999999999998 5676666442  358999999999999653              4444444433         56


Q ss_pred             hhccCCCHHHHHHHHHHHHhC
Q psy11510        151 ATKVKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       151 sa~~~~~v~~~f~~l~~~i~~  171 (171)
                      ||++|.|++++|+.+++.+++
T Consensus       180 SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHS
T ss_pred             eCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999988763

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.94  E-value=3.1e-26  Score=167.82  Aligned_cols=135  Identities=23%  Similarity=0.371  Sum_probs=112.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|++|||||||++++.+                     .++..+.+.+||+||++.+...+..+++.+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            45679999999999999999999986                     222347899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      ++|||++++.+++.+..|+..+.... ..++|+++|+||+|+.. ....++...+.        ++||++|.|++++|+.
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  175 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT  175 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988886542 35799999999999964 45555555554        5699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       176 l~~~~~  181 (213)
T 3cph_A          176 LAKLIQ  181 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.93  E-value=6.2e-26  Score=164.91  Aligned_cols=133  Identities=17%  Similarity=0.200  Sum_probs=105.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------c-ccCceEEEEEecCCccchhHHH---HHhhhCC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------I-MTFRFKLNIWDVGGQKSLRSYW---RNYFEST   90 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~-~~~~~~~~i~d~~g~~~~~~~~---~~~~~~~   90 (171)
                      ..+.+||+++|+.|||||||++++.+                    + .+..+.+.+||++|+++|....   ..+++++
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   96 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGT   96 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTC
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccC
Confidence            67889999999999999999998887                    1 2456889999999999987765   8999999


Q ss_pred             CEEEEEEeCCCh--hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC---------CCHHHHHHHH-----------
Q psy11510         91 DGLIWVVDSADK--RRLEDCARELHELLQEERLAGATLLVFANKQDIEGA---------LTPEDIKNVS-----------  148 (171)
Q Consensus        91 ~~ii~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~~-----------  148 (171)
                      |++++|||+++.  ++++.+..|+..+...  .+++|+++|+||+|+.+.         +..++..++.           
T Consensus        97 ~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  174 (196)
T 3llu_A           97 GALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF  174 (196)
T ss_dssp             SEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred             CEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence            999999999997  6777777777776432  368999999999998651         1222222222           


Q ss_pred             -HhhhccCCCHHHHHHHHHHHHh
Q psy11510        149 -EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       149 -~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                       ++||++ .|++++|+.+++.++
T Consensus       175 ~e~Sa~~-~~v~~~f~~l~~~li  196 (196)
T 3llu_A          175 YLTSIYD-HSIFEAFSKVVQKLI  196 (196)
T ss_dssp             EEECTTS-THHHHHHHHHHHHTC
T ss_pred             EEEEech-hhHHHHHHHHHHHhC
Confidence             569999 999999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.93  E-value=3.2e-25  Score=162.89  Aligned_cols=135  Identities=25%  Similarity=0.258  Sum_probs=102.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------cccC-ceEEEEEecCCccchhH-HHHHhhhCCCEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------IMTF-RFKLNIWDVGGQKSLRS-YWRNYFESTDGLI   94 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------~~~~-~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ii   94 (171)
                      .++.+||+++|++|||||||++++.+                  .+.. .+.+.+||+||++++.. +++.+++++|+++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i   83 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV   83 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence            45789999999999999999999986                  2222 67899999999999998 8999999999999


Q ss_pred             EEEeCCChh-hHHHHHHHHHHHHhc--cccCCCeEEEEEeCCCCCCCCCHHHHHH-------------------------
Q psy11510         95 WVVDSADKR-RLEDCARELHELLQE--ERLAGATLLVFANKQDIEGALTPEDIKN-------------------------  146 (171)
Q Consensus        95 ~v~d~~~~~-s~~~~~~~~~~i~~~--~~~~~~p~ivv~nK~Dl~~~~~~~~~~~-------------------------  146 (171)
                      +|+|+++.. ++.....++..++..  ....++|+++|+||+|+.+....+++.+                         
T Consensus        84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~  163 (214)
T 2fh5_B           84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST  163 (214)
T ss_dssp             EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence            999999854 566666666665543  1235799999999999987544332211                         


Q ss_pred             ----------------------HHHhhhccC------CCHHHHHHHHHHHH
Q psy11510        147 ----------------------VSEKATKVK------LNKQSKFQVLLNEV  169 (171)
Q Consensus       147 ----------------------~~~~sa~~~------~~v~~~f~~l~~~i  169 (171)
                                            +.++||++|      .|++++|+++++.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~  214 (214)
T 2fh5_B          164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA  214 (214)
T ss_dssp             -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred             ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence                                  235799999      99999999998753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.93  E-value=1e-27  Score=174.70  Aligned_cols=135  Identities=21%  Similarity=0.342  Sum_probs=104.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..+.+||+++|.+|||||||++++.+                     .+...+.+.+||++|++.+..++..+++++|++
T Consensus        30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  109 (199)
T 3l0i_B           30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI  109 (199)
T ss_dssp             CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence            45689999999999999999999987                     233447899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+  .+..++...+.        ++||++|.|++++|+
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~  188 (199)
T 3l0i_B          110 IVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  188 (199)
T ss_dssp             EECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            9999999999999999998888543 345899999999999965  23323333332        679999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       189 ~l~~~l~  195 (199)
T 3l0i_B          189 TMAAEIK  195 (199)
T ss_dssp             HHTTTTT
T ss_pred             HHHHHHH
Confidence            9987664

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.87  E-value=1.9e-27  Score=173.73  Aligned_cols=135  Identities=13%  Similarity=0.171  Sum_probs=110.6

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ..++.+||+++|.+|||||||++++.+                    .++..+.+.+||+||++++...+..+++++|++
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i  105 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF  105 (204)
Confidence            357889999999999999999999886                    334456788999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC--------------CCHHHHH---------HHHH
Q psy11510         94 IWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA--------------LTPEDIK---------NVSE  149 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--------------~~~~~~~---------~~~~  149 (171)
                      ++|||++++.+++.+. .|+..+...  .+++|+++|+||+|+.+.              +..++..         .+.+
T Consensus       106 ilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  183 (204)
T 3th5_A          106 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE  183 (204)
Confidence            9999999999999987 666666432  248999999999999652              1112111         3458


Q ss_pred             hhhccCCCHHHHHHHHHHHHh
Q psy11510        150 KATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       150 ~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      +||++|.|++++|+.+++.++
T Consensus       184 vSA~~g~gi~~l~~~l~~~il  204 (204)
T 3th5_A          184 CSALTQRGLKTVFDEAIRAVL  204 (204)
Confidence            899999999999999988764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.92  E-value=1.6e-24  Score=168.59  Aligned_cols=134  Identities=12%  Similarity=0.173  Sum_probs=111.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ...+||+++|.+|+|||||++++..                    .++..+.+.+||++|++.+...+..+++++|++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            4569999999999999999999986                    23445677899999999999999999999999999


Q ss_pred             EEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhh
Q psy11510         96 VVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKA  151 (171)
Q Consensus        96 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~s  151 (171)
                      |||++++.+++.+. .|+..+...  .+++|+++|+||+|+.+              .++.++...+.         ++|
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  310 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  310 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec
Confidence            99999999999987 666666443  24899999999999854              34555555444         569


Q ss_pred             hccCCCHHHHHHHHHHHHhC
Q psy11510        152 TKVKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       152 a~~~~~v~~~f~~l~~~i~~  171 (171)
                      |++|.|++++|+.+++.+++
T Consensus       311 a~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          311 ALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCcCHHHHHHHHHHHHhc
Confidence            99999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.91  E-value=8.4e-25  Score=157.42  Aligned_cols=131  Identities=14%  Similarity=0.194  Sum_probs=104.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------c-----ccCceEEEEEecCCccchhHHHHHhhhCCC
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------I-----MTFRFKLNIWDVGGQKSLRSYWRNYFESTD   91 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------~-----~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   91 (171)
                      ++||+++|++|||||||++++.+                     .     +...+.+.+||++|++.+..+++.++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            58999999999999999999986                     0     124568899999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH-----HHHHH------------HHHhhhc
Q psy11510         92 GLIWVVDSADK-RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP-----EDIKN------------VSEKATK  153 (171)
Q Consensus        92 ~ii~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~-----~~~~~------------~~~~sa~  153 (171)
                      ++++|+|++++ .+++.+..|+..+...  .+++|+++|+||+|+.+....     +....            +.++||+
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  159 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNAT  159 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTT
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecc
Confidence            99999999997 5799999999888654  257999999999999763111     11111            2357999


Q ss_pred             cCC-CHHHHHHHHHHHHh
Q psy11510        154 VKL-NKQSKFQVLLNEVS  170 (171)
Q Consensus       154 ~~~-~v~~~f~~l~~~i~  170 (171)
                      +|. +++++++.+.+.+.
T Consensus       160 ~~~~~~~~l~~~i~~~~~  177 (184)
T 2zej_A          160 EESDALAKLRKTIINESL  177 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHH
T ss_pred             cCchhHHHHHHHHHHHHh
Confidence            996 99999999988765

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.91  E-value=1.6e-24  Score=169.08  Aligned_cols=108  Identities=18%  Similarity=0.333  Sum_probs=94.4

Q ss_pred             cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC----------CChhhHHHHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510         63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS----------ADKRRLEDCARELHELLQEERLAGATLLVFANK  132 (171)
Q Consensus        63 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~----------~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK  132 (171)
                      .+.+.+++||++||++++..|..|+++++++|||+|+          ++.++|++...|+..+.......++|+++++||
T Consensus       164 ~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          164 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK  243 (327)
T ss_dssp             ETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred             eeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEEC
Confidence            3567899999999999999999999999999999955          478889999999999988777789999999999


Q ss_pred             CCCCC------------------CCCHHHHHHHH------------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        133 QDIEG------------------ALTPEDIKNVS------------------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       133 ~Dl~~------------------~~~~~~~~~~~------------------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      +|+.+                  ..+.++..+++                  ++||+++.||+.+|..+.+.|+
T Consensus       244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il  317 (327)
T 3ohm_A          244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  317 (327)
T ss_dssp             HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence            99854                  35677777663                  5699999999999999998886

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.91  E-value=1.9e-23  Score=152.04  Aligned_cols=134  Identities=22%  Similarity=0.356  Sum_probs=111.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ...+||+++|+.|||||||++++.+                     +++..+.+.+||++|++.++..+..+++++++++
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i   82 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL   82 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence            3578999999999999999999987                     2223467789999999999988899999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|+|+++..+++.+..|+..+... ...+.|+++++||+|+.+  ....++++.+.        ++|++++.|++++|+.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999988888776432 235789999999999975  45556555554        5799999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +.+.+.
T Consensus       162 l~~~~~  167 (199)
T 2f9l_A          162 ILTEIY  167 (199)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.91  E-value=1.8e-24  Score=163.79  Aligned_cols=136  Identities=15%  Similarity=0.178  Sum_probs=107.5

Q ss_pred             CCceeEEEEEeCC---------CCcHHHHHHHHhc-----------------------c----------------ccCce
Q psy11510         35 VSNVAVVSLLRNK---------NGGETLILKKKKM-----------------------I----------------MTFRF   66 (171)
Q Consensus        35 ~~~~~ki~liG~~---------~~GKttli~~~~~-----------------------~----------------~~~~~   66 (171)
                      ..+.+||+++|.+         |||||||++++.+                       +                +...+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            5678999999999         9999999999985                       0                12446


Q ss_pred             EEEEEe-----------------------cCCccchhHHHHHhhh---------------------CCCEEEEEEeCCCh
Q psy11510         67 KLNIWD-----------------------VGGQKSLRSYWRNYFE---------------------STDGLIWVVDSADK  102 (171)
Q Consensus        67 ~~~i~d-----------------------~~g~~~~~~~~~~~~~---------------------~~~~ii~v~d~~~~  102 (171)
                      .+.+||                       ++|++++..++..+++                     ++|++++|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            799999                       7788888888888877                     79999999999998


Q ss_pred             --hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH---------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        103 --RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS---------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       103 --~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                        .+|+.+..|+..+.......++|+++|+||+|+.+....+++..+.         ++||++|.|++++|+.+++.+.
T Consensus       176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence              9999999999988765344689999999999996532223444433         5699999999999999998764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.91  E-value=8.8e-24  Score=150.41  Aligned_cols=129  Identities=19%  Similarity=0.245  Sum_probs=99.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+.++|+++|++|||||||++++.+                   +...+..+.+||+||++.+..++..++..+|++++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL   84 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence            45789999999999999999999986                   22345678999999999999988888999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH-----------------HHhhhccCCCH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV-----------------SEKATKVKLNK  158 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~-----------------~~~sa~~~~~v  158 (171)
                      |+|++++...+.. +.+..+.    ..++|+++|+||+|+.+. +.+++...                 .++||++|.|+
T Consensus        85 v~d~~~~~~~~~~-~~l~~~~----~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  158 (178)
T 2lkc_A           85 VVAADDGVMPQTV-EAINHAK----AANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL  158 (178)
T ss_dssp             EEETTCCCCHHHH-HHHHHHG----GGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred             EEECCCCCcHHHH-HHHHHHH----hCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence            9999884322221 1222231    247899999999999763 33333322                 25799999999


Q ss_pred             HHHHHHHHHHH
Q psy11510        159 QSKFQVLLNEV  169 (171)
Q Consensus       159 ~~~f~~l~~~i  169 (171)
                      +++|+.+++.+
T Consensus       159 ~~l~~~l~~~~  169 (178)
T 2lkc_A          159 DHLLEMILLVS  169 (178)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999998765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.90  E-value=5.5e-24  Score=167.87  Aligned_cols=107  Identities=21%  Similarity=0.386  Sum_probs=93.7

Q ss_pred             CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510         64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                      +.+.+++||++||++++..|..++++++++|||||+++          .++|++...|+..+.+.....++|+++|+||+
T Consensus       191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence            46789999999999999999999999999999999999          67899999999999887667889999999999


Q ss_pred             CCCC-----------------CCCHHHHHHHH-------------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        134 DIEG-----------------ALTPEDIKNVS-------------------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       134 Dl~~-----------------~~~~~~~~~~~-------------------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      |+..                 +++.+++.+++                   ++||+++.||+++|+.+++.++
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~  343 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  343 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence            9852                 35666766654                   4699999999999999998775

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.90  E-value=3.7e-23  Score=146.37  Aligned_cols=126  Identities=21%  Similarity=0.240  Sum_probs=97.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh------HHHHHhhh--C
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR------SYWRNYFE--S   89 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~   89 (171)
                      +.++|+++|++|||||||++++.+                   +...+..+.+|||||++.+.      .+...+++  +
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   81 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK   81 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence            468999999999999999999987                   12235678999999998774      45566765  8


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CC--CHHHHHHHH-----HhhhccCCCHHH
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--AL--TPEDIKNVS-----EKATKVKLNKQS  160 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~--~~~~~~~~~-----~~sa~~~~~v~~  160 (171)
                      +|++++|+|+++.++   ...|+..+.+    .++|+++|+||+|+..  .+  ..+++.+..     ++||++|.|+++
T Consensus        82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~  154 (165)
T 2wji_A           82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE  154 (165)
T ss_dssp             CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred             CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence            999999999988543   3456666643    3799999999999854  22  223333322     679999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +|+.+++.+
T Consensus       155 l~~~l~~~~  163 (165)
T 2wji_A          155 LKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998875

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.90  E-value=2.4e-24  Score=167.59  Aligned_cols=128  Identities=16%  Similarity=0.152  Sum_probs=94.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc---------------cc----cCceEEEEEecCCccchhH---HHHHhhhCCCEEEEEE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM---------------IM----TFRFKLNIWDVGGQKSLRS---YWRNYFESTDGLIWVV   97 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~---------------~~----~~~~~~~i~d~~g~~~~~~---~~~~~~~~~~~ii~v~   97 (171)
                      ||+++|++|||||||++++.+               .+    ...+++++|||+||++|+.   .++.|+++++++|+||
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~   80 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI   80 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence            799999999999999998764               11    2347899999999999974   4789999999999999


Q ss_pred             eCCCh--hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC---------CCHHHHHHH------------HHhhhcc
Q psy11510         98 DSADK--RRLEDCARELHELLQEERLAGATLLVFANKQDIEGA---------LTPEDIKNV------------SEKATKV  154 (171)
Q Consensus        98 d~~~~--~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~---------~~~~~~~~~------------~~~sa~~  154 (171)
                      |+++.  +.++...+|+..+.+  ..+++|+++++||+|+...         +..++..++            .++||++
T Consensus        81 Ditd~~~~~~~~l~~~l~~~~~--~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd  158 (331)
T 3r7w_B           81 DSQDEYINAITNLAMIIEYAYK--VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD  158 (331)
T ss_dssp             CCSSCTTHHHHHHHHHHHHHHH--HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS
T ss_pred             ECCchHHHHHHHHHHHHHHHhh--cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC
Confidence            99997  223333333333322  2468999999999999753         122222221            1678987


Q ss_pred             CCCHHHHHHHHHHHHh
Q psy11510        155 KLNKQSKFQVLLNEVS  170 (171)
Q Consensus       155 ~~~v~~~f~~l~~~i~  170 (171)
                       .||.++|..+++.++
T Consensus       159 -~nV~eAFs~iv~~li  173 (331)
T 3r7w_B          159 -HSIYEAFSRIVQKLI  173 (331)
T ss_dssp             -SHHHHHHHHHHTTSS
T ss_pred             -CcHHHHHHHHHHHHH
Confidence             699999999988764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.90  E-value=5e-23  Score=149.18  Aligned_cols=135  Identities=22%  Similarity=0.354  Sum_probs=111.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ....++|+++|+.|||||||++++.+                     +++..+.+.+||++|++++...+..+++.++++
T Consensus        26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~  105 (191)
T 1oix_A           26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA  105 (191)
T ss_dssp             CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence            44679999999999999999999987                     122345667899999999999899999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|+|+++..+++.+..|+..+... ...+.|+++++||+|+.+  ....++++.+.        ++|++++.|++++|+
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~  184 (191)
T 1oix_A          106 LLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ  184 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999888888776432 235789999999999975  35555555554        579999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+.+.++
T Consensus       185 ~l~~~i~  191 (191)
T 1oix_A          185 TILTEIY  191 (191)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.90  E-value=1.1e-23  Score=147.43  Aligned_cols=124  Identities=15%  Similarity=0.200  Sum_probs=95.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc-------hhHHHHHhhhCCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS-------LRSYWRNYFESTD   91 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~-------~~~~~~~~~~~~~   91 (171)
                      .||+++|++|+|||||++++.+                    ....+..+.+||+||+..       +...+..+++.+|
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE   81 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence            5899999999999999999987                    223456789999999887       4556778889999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH--------HHHHhhhccCCCHHHHHH
Q psy11510         92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK--------NVSEKATKVKLNKQSKFQ  163 (171)
Q Consensus        92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~--------~~~~~sa~~~~~v~~~f~  163 (171)
                      ++++|+|++++.+..  ..++...+..   .+.|+++|+||+|+.+.  .+++.        .+.++||++|.|++++|+
T Consensus        82 ~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  154 (161)
T 2dyk_A           82 VVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLYGLGFGDPIPTSSEHARGLEELLE  154 (161)
T ss_dssp             EEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred             EEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHHhCCCCCeEEEecccCCChHHHHH
Confidence            999999999864432  2334444333   47899999999999763  11111        233779999999999999


Q ss_pred             HHHHHH
Q psy11510        164 VLLNEV  169 (171)
Q Consensus       164 ~l~~~i  169 (171)
                      .+++.+
T Consensus       155 ~l~~~l  160 (161)
T 2dyk_A          155 AIWERL  160 (161)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.90  E-value=1.4e-22  Score=150.51  Aligned_cols=137  Identities=13%  Similarity=0.115  Sum_probs=101.1

Q ss_pred             cCCC-CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCc------cc----hh
Q psy11510         31 HRPQ-VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQ------KS----LR   80 (171)
Q Consensus        31 ~~~~-~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~------~~----~~   80 (171)
                      +++. ..+.+||+++|.+|||||||++++.+                   .......+.+|||||+      +.    +.
T Consensus        21 ~~P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~  100 (228)
T 2qu8_A           21 GLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT  100 (228)
T ss_dssp             -CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH
T ss_pred             cCCCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH
Confidence            3443 45789999999999999999999987                   1224578999999998      44    22


Q ss_pred             HHHHHhhhCCCEEEEEEeCCChhhHH--HHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHH---HHHHH------
Q psy11510         81 SYWRNYFESTDGLIWVVDSADKRRLE--DCARELHELLQEERLAGATLLVFANKQDIEG--ALTPE---DIKNV------  147 (171)
Q Consensus        81 ~~~~~~~~~~~~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~---~~~~~------  147 (171)
                      . +..++..+|++++|+|++++.+|+  ....|+..+...  .+++|+++|+||+|+.+  .+..+   .+..+      
T Consensus       101 ~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  177 (228)
T 2qu8_A          101 T-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKN  177 (228)
T ss_dssp             H-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCS
T ss_pred             H-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCC
Confidence            2 345578899999999999988764  233556655332  24899999999999975  34432   22222      


Q ss_pred             ----HHhhhccCCCHHHHHHHHHHHHh
Q psy11510        148 ----SEKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       148 ----~~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                          .++||++|.|++++|+.+++.+.
T Consensus       178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~  204 (228)
T 2qu8_A          178 PIKFSSFSTLTGVGVEQAKITACELLK  204 (228)
T ss_dssp             CEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CceEEEEecccCCCHHHHHHHHHHHHH
Confidence                25699999999999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.89  E-value=4e-23  Score=160.35  Aligned_cols=133  Identities=17%  Similarity=0.195  Sum_probs=104.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cc-cCceEEEEEecCCccch-----hHHHHHhhhCC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IM-TFRFKLNIWDVGGQKSL-----RSYWRNYFEST   90 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~-~~~~~~~i~d~~g~~~~-----~~~~~~~~~~~   90 (171)
                      ..+||+++|++|||||||++++.+                    .. .+.+.+.+||+||++++     ...+..+++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a   81 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV   81 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence            568999999999999999999876                    11 24678999999999998     67889999999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhc-cccCCCeEEEEEeCCCCCCC--------CCHHHHHHHH-----------Hh
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQE-ERLAGATLLVFANKQDIEGA--------LTPEDIKNVS-----------EK  150 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~p~ivv~nK~Dl~~~--------~~~~~~~~~~-----------~~  150 (171)
                      |++++|||++++.+|+.+..|...+... ...+++|+++|+||+|+.+.        ...+++.++.           ++
T Consensus        82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t  161 (307)
T 3r7w_A           82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT  161 (307)
T ss_dssp             SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred             CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence            9999999999999999887664443221 11368999999999999762        2223333333           45


Q ss_pred             hhccCCCHHHHHHHHHHHHh
Q psy11510        151 ATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       151 sa~~~~~v~~~f~~l~~~i~  170 (171)
                      ||++ .++.++|..+++.++
T Consensus       162 Sa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          162 SIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             CTTS-SHHHHHHHHHHHTTC
T ss_pred             eecC-ChHHHHHHHHHHHHc
Confidence            8888 899999999887653

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=7.5e-23  Score=150.57  Aligned_cols=107  Identities=25%  Similarity=0.338  Sum_probs=90.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------cccCceEEEEEecCCccchhHHHHHhhhC----CCEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------IMTFRFKLNIWDVGGQKSLRSYWRNYFES----TDGLIW   95 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~~~ii~   95 (171)
                      ..+.++|+++|++|+|||||++++.+               .......+.+||+||++.++..+..+++.    +|++++
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~   88 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF   88 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEE
Confidence            45789999999999999999999997               11124578999999999999999999887    899999


Q ss_pred             EEeCC-ChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCCCH
Q psy11510         96 VVDSA-DKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEGALTP  141 (171)
Q Consensus        96 v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~~~~~  141 (171)
                      |+|++ ++.+|.....|+..++....   ..++|+++|+||+|+......
T Consensus        89 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~  138 (218)
T 1nrj_B           89 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP  138 (218)
T ss_dssp             EEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred             EEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCH
Confidence            99999 88899999999988876532   368999999999999876553

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.89  E-value=1.5e-22  Score=145.76  Aligned_cols=129  Identities=12%  Similarity=0.089  Sum_probs=97.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCC----------ccchhHHHHHhh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGG----------QKSLRSYWRNYF   87 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g----------~~~~~~~~~~~~   87 (171)
                      ....+||+++|+.|||||||++++.+                 ....+..+.+||+||          ++.+..+++.++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF   99 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence            56778999999999999999999987                 111123578999999          777888888888


Q ss_pred             hCC---CEEEEEEeCCChhhH--HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH---------H
Q psy11510         88 EST---DGLIWVVDSADKRRL--EDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS---------E  149 (171)
Q Consensus        88 ~~~---~~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~---------~  149 (171)
                      +.+   |++++|+|+++..+.  ..+..|+..       .++|+++|+||+|+.+....    +++.+..         +
T Consensus       100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (195)
T 3pqc_A          100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIP  172 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEE
T ss_pred             hcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEE
Confidence            776   999999998875443  233333332       27899999999999763322    2233322         5


Q ss_pred             hhhccCCCHHHHHHHHHHHHh
Q psy11510        150 KATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       150 ~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      +||++|.|++++|+.+.+.+.
T Consensus       173 ~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          173 TSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHC
T ss_pred             EecCCCCCHHHHHHHHHHHhh
Confidence            699999999999999988764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.88  E-value=4.7e-24  Score=152.21  Aligned_cols=132  Identities=18%  Similarity=0.177  Sum_probs=96.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH------H--HHHhh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS------Y--WRNYF   87 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~------~--~~~~~   87 (171)
                      ++..||+++|.+|||||||++++.+                    +...+..+.+|||||++.+..      +  ...++
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            3568999999999999999999986                    112345689999999865321      1  12457


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHHHHHHHhhhccCCCHHHHHHH
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDIKNVSEKATKVKLNKQSKFQV  164 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~~~~~~~sa~~~~~v~~~f~~  164 (171)
                      +++|++++|+|++++.+++. ..|+..+.+. ...++|+++|+||+|+.+....   .....+.++||++|.|++++|+.
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~  159 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNH  159 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHHH
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCHHHHHHH
Confidence            89999999999999888763 4566666443 2357999999999998542110   00113347899999999999999


Q ss_pred             HHHHH
Q psy11510        165 LLNEV  169 (171)
Q Consensus       165 l~~~i  169 (171)
                      +.+.+
T Consensus       160 l~~~~  164 (172)
T 2gj8_A          160 LKQSM  164 (172)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            98754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.88  E-value=1.8e-22  Score=145.80  Aligned_cols=131  Identities=15%  Similarity=0.198  Sum_probs=99.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhcc------------cc------CceEEEEEecCC----------ccchhHHHHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMI------------MT------FRFKLNIWDVGG----------QKSLRSYWRNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~------------~~------~~~~~~i~d~~g----------~~~~~~~~~~~   86 (171)
                      ..+.++|+++|.+|||||||++++.+-            ..      .+..+.+||+||          ++.+..++..+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   99 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence            456899999999999999999999870            00      012578999999          78888888888


Q ss_pred             hhCC---CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HHHHHHH---------Hh
Q psy11510         87 FEST---DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP----EDIKNVS---------EK  150 (171)
Q Consensus        87 ~~~~---~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~~~~~~---------~~  150 (171)
                      ++.+   |++++|+|++++.++....  +...+..   .+.|+++|+||+|+.+....    +++.+.+         ++
T Consensus       100 ~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (195)
T 1svi_A          100 ITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred             HhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEE
Confidence            8877   9999999999887776532  1122222   57899999999999764322    2333322         56


Q ss_pred             hhccCCCHHHHHHHHHHHHh
Q psy11510        151 ATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       151 sa~~~~~v~~~f~~l~~~i~  170 (171)
                      ||++|.|++++|+.+.+.+-
T Consensus       175 Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          175 SSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHT
T ss_pred             EccCCCCHHHHHHHHHHHhc
Confidence            99999999999999988763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.88  E-value=3.2e-22  Score=143.67  Aligned_cols=128  Identities=21%  Similarity=0.239  Sum_probs=99.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh------HHHHHhhh-
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR------SYWRNYFE-   88 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~------~~~~~~~~-   88 (171)
                      ..+.++|+++|+.|||||||++++.+                   +...+..+.+||+||++.+.      .++..++. 
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIIN   83 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence            44679999999999999999999987                   23345778999999998874      45677775 


Q ss_pred             -CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--C--CCHHHHHHHH-----HhhhccCCCH
Q psy11510         89 -STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--A--LTPEDIKNVS-----EKATKVKLNK  158 (171)
Q Consensus        89 -~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~--~~~~~~~~~~-----~~sa~~~~~v  158 (171)
                       .+|++++|+|+++   ++....|+..+..    .+.|+++|+||+|+..  .  ...+++.+..     ++||++|.|+
T Consensus        84 ~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           84 EKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             cCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCH
Confidence             5999999999875   4555667776643    4789999999999854  1  2233333332     6799999999


Q ss_pred             HHHHHHHHHHH
Q psy11510        159 QSKFQVLLNEV  169 (171)
Q Consensus       159 ~~~f~~l~~~i  169 (171)
                      +++|+.+++.+
T Consensus       157 ~~l~~~i~~~~  167 (188)
T 2wjg_A          157 EELKKAISIAV  167 (188)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.88  E-value=2.4e-23  Score=164.21  Aligned_cols=107  Identities=19%  Similarity=0.306  Sum_probs=88.2

Q ss_pred             CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510         64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA----------DKRRLEDCARELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                      ..+.+++||++||++++.+|+.++++++++|+|||++          +.++|++...|+..+.+....+++|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            4578999999999999999999999999999999998          788999999999999876666789999999999


Q ss_pred             CCCCC----CC-------------------HHHHHHH------------------------HHhhhccCCCHHHHHHHHH
Q psy11510        134 DIEGA----LT-------------------PEDIKNV------------------------SEKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       134 Dl~~~----~~-------------------~~~~~~~------------------------~~~sa~~~~~v~~~f~~l~  166 (171)
                      |+.+.    ++                   .++..++                        .++||+++.||+++|+.++
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            98431    11                   2333222                        2579999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.|+
T Consensus       341 ~~I~  344 (354)
T 2xtz_A          341 ETLR  344 (354)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.88  E-value=2.4e-23  Score=149.57  Aligned_cols=131  Identities=16%  Similarity=0.124  Sum_probs=96.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------cccCc--e---EEEEEecCC-----------ccchhHHHHHhhhC-CC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------IMTFR--F---KLNIWDVGG-----------QKSLRSYWRNYFES-TD   91 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------~~~~~--~---~~~i~d~~g-----------~~~~~~~~~~~~~~-~~   91 (171)
                      +||+++|++|||||||++++.+          .....  +   .+.+||+||           ++.+...+..++++ ++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK   81 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhc
Confidence            6899999999999999999998          01000  1   478999999           77888888888887 77


Q ss_pred             EEEEEEeCCChhhHHHH-HHHHHH--------HHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---------------
Q psy11510         92 GLIWVVDSADKRRLEDC-ARELHE--------LLQEERLAGATLLVFANKQDIEGALTPEDIKNV---------------  147 (171)
Q Consensus        92 ~ii~v~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---------------  147 (171)
                      ++++|+++.+..++..+ ..|...        +.......++|+++|+||+|+.+.. .++..++               
T Consensus        82 ~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~  160 (190)
T 2cxx_A           82 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVF  160 (190)
T ss_dssp             GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHE
T ss_pred             cCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcE
Confidence            77777777677777766 445432        2222223689999999999997643 2233322               


Q ss_pred             HHhhhccCCCHHHHHHHHHHHHh
Q psy11510        148 SEKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       148 ~~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      .++||++|.|++++|+.+++.+.
T Consensus       161 ~~~Sa~~~~~v~~l~~~l~~~~~  183 (190)
T 2cxx_A          161 IPISAKFGDNIERLKNRIFEVIR  183 (190)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCHHHHHHHHHHhcc
Confidence            35799999999999999998763

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.88  E-value=1.5e-22  Score=158.46  Aligned_cols=107  Identities=24%  Similarity=0.365  Sum_probs=90.9

Q ss_pred             CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC----------ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510         64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA----------DKRRLEDCARELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                      +.+.+++||++||++++.+|..|+++++++|||+|++          +.++|++...|+..+.......++|+++++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            5678899999999999999999999999999999998          788999999999999888777899999999999


Q ss_pred             CCCC-----------------CCCHHHHHHHH-----------------------------------HhhhccCCCHHHH
Q psy11510        134 DIEG-----------------ALTPEDIKNVS-----------------------------------EKATKVKLNKQSK  161 (171)
Q Consensus       134 Dl~~-----------------~~~~~~~~~~~-----------------------------------~~sa~~~~~v~~~  161 (171)
                      |+.+                 ..+.+++.+++                                   ++||+++.||+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            9843                 12344442221                                   4588899999999


Q ss_pred             HHHHHHHHh
Q psy11510        162 FQVLLNEVS  170 (171)
Q Consensus       162 f~~l~~~i~  170 (171)
                      |..+.+.|+
T Consensus       319 F~~v~~~Il  327 (340)
T 4fid_A          319 FMLAVDVIM  327 (340)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998876

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.88  E-value=8.5e-23  Score=161.58  Aligned_cols=107  Identities=20%  Similarity=0.374  Sum_probs=86.7

Q ss_pred             CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510         64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                      +++.+.+||++||+.++..|..++++++++|||+|+++          .++|++...|+..+.+.....++|+++++||+
T Consensus       199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence            46789999999999999999999999999999999999          78999999999999887667899999999999


Q ss_pred             CCCC------------------CCCHHHHHHHH-------------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        134 DIEG------------------ALTPEDIKNVS-------------------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       134 Dl~~------------------~~~~~~~~~~~-------------------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      |+..                  .++.+++.+++                   ++||+++.||+++|+.+.+.|+
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~  352 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  352 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence            9852                  25666666543                   4699999999999999988775

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.1e-22  Score=144.45  Aligned_cols=114  Identities=25%  Similarity=0.336  Sum_probs=94.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------cccCceEEEEEecCCccchhHHHHHhhhC----CCEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------IMTFRFKLNIWDVGGQKSLRSYWRNYFES----TDGLIW   95 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~----~~~ii~   95 (171)
                      ..+.++|+++|++|||||||++++.+               .+.....+.+||+||++.+...+..++.+    +|++++
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~  124 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF  124 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE
Confidence            45679999999999999999999997               11234568899999999998888888776    899999


Q ss_pred             EEeCC-ChhhHHHHHHHHHHHHhccc---cCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510         96 VVDSA-DKRRLEDCARELHELLQEER---LAGATLLVFANKQDIEGALTPEDIKNVS  148 (171)
Q Consensus        96 v~d~~-~~~s~~~~~~~~~~i~~~~~---~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  148 (171)
                      |+|++ +..++..+..|+..++....   .+++|+++|+||+|+.+....+++.+.+
T Consensus       125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l  181 (193)
T 2ged_A          125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL  181 (193)
T ss_dssp             EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence            99999 89999999999988876432   2589999999999998876666665554

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.86  E-value=1.7e-21  Score=151.24  Aligned_cols=133  Identities=15%  Similarity=0.125  Sum_probs=104.0

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccC-ceEEEEEecCCccchh----------H
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTF-RFKLNIWDVGGQKSLR----------S   81 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~-~~~~~i~d~~g~~~~~----------~   81 (171)
                      +++.+.-.|+++|.+|||||||++++.+                    .... +..+.+|||||+....          .
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence            3467889999999999999999999998                    2334 7889999999985543          5


Q ss_pred             HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC-CC-CCHHHHHHHH----------H
Q psy11510         82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE-GA-LTPEDIKNVS----------E  149 (171)
Q Consensus        82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~-~~-~~~~~~~~~~----------~  149 (171)
                      .+..+++.+|++++|+|+++..++.....|+..+..    .++|+++|+||+|+. +. ...+.+..+.          +
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            667788999999999999998888877666666533    479999999999997 32 2222222222          4


Q ss_pred             hhhccCCCHHHHHHHHHHHH
Q psy11510        150 KATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       150 ~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +||++|.|++++|+.+++.+
T Consensus       161 vSA~~g~gv~~L~~~l~~~l  180 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYL  180 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHS
T ss_pred             EeCCCCCCHHHHHHHHHHhC
Confidence            59999999999999998754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.86  E-value=1.6e-21  Score=147.97  Aligned_cols=127  Identities=17%  Similarity=0.169  Sum_probs=98.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH------HHHHhh--h
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS------YWRNYF--E   88 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~   88 (171)
                      .+.++|+++|++|||||||++++.+                   +...+..+.+||+||+..+..      +...++  .
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~   82 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG   82 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence            4679999999999999999999997                   233467899999999987764      335565  4


Q ss_pred             CCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH-----HhhhccCCCHH
Q psy11510         89 STDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS-----EKATKVKLNKQ  159 (171)
Q Consensus        89 ~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~-----~~sa~~~~~v~  159 (171)
                      .+|++++|+|+++.++.   ..|+..+.+    .++|+++|+||+|+.+    ....+++.+.+     ++||++|.|++
T Consensus        83 ~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~  155 (258)
T 3a1s_A           83 DADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE  155 (258)
T ss_dssp             CCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred             CCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence            89999999999986554   335555543    3799999999999854    22334444443     67999999999


Q ss_pred             HHHHHHHHHH
Q psy11510        160 SKFQVLLNEV  169 (171)
Q Consensus       160 ~~f~~l~~~i  169 (171)
                      ++|+.+++.+
T Consensus       156 el~~~i~~~~  165 (258)
T 3a1s_A          156 ELKEKIVEYA  165 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.86  E-value=3.6e-22  Score=159.51  Aligned_cols=107  Identities=21%  Similarity=0.351  Sum_probs=90.1

Q ss_pred             CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----------hhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510         64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----------KRRLEDCARELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                      +++.+++||++||++++.+|..|+++++++|||||+++          .++|++...|+..+.+....+++|+++|+||+
T Consensus       215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~  294 (402)
T 1azs_C          215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  294 (402)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred             CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence            45789999999999999999999999999999999999          89999999999999876666789999999999


Q ss_pred             CCCC-C----C---------------------------CHHHHHHHH---------------------HhhhccCCCHHH
Q psy11510        134 DIEG-A----L---------------------------TPEDIKNVS---------------------EKATKVKLNKQS  160 (171)
Q Consensus       134 Dl~~-~----~---------------------------~~~~~~~~~---------------------~~sa~~~~~v~~  160 (171)
                      |+.. .    +                           +.+++..++                     ++||+++.||++
T Consensus       295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~  374 (402)
T 1azs_C          295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  374 (402)
T ss_dssp             HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred             hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence            9843 1    1                           023333321                     578999999999


Q ss_pred             HHHHHHHHHh
Q psy11510        161 KFQVLLNEVS  170 (171)
Q Consensus       161 ~f~~l~~~i~  170 (171)
                      +|..+.+.|+
T Consensus       375 vF~~v~~~I~  384 (402)
T 1azs_C          375 VFNDCRDIIQ  384 (402)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.86  E-value=1.9e-21  Score=161.04  Aligned_cols=131  Identities=18%  Similarity=0.183  Sum_probs=103.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------c--------------ccCceEEEEEecCCccchhHHHHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------I--------------MTFRFKLNIWDVGGQKSLRSYWRN   85 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------~--------------~~~~~~~~i~d~~g~~~~~~~~~~   85 (171)
                      ..+.+||+++|.+|||||||++++.+               .              ....+.+.+||+||++.+...+..
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            56789999999999999999999997               0              122578999999999999999999


Q ss_pred             hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccC
Q psy11510         86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVK  155 (171)
Q Consensus        86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~  155 (171)
                      +++++|++++|+|+++.+   ....|+..+...  .++.|+++|+||+|+.+  .+..+++.+..        ++||++|
T Consensus       118 ~l~~~d~ii~V~D~s~~~---~~~~~~~~l~~~--~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTDS---NKHYWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHSSEEEEEEECGGGGG---GHHHHHHHHHHH--SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HccCCcEEEEEEeCCCch---hHHHHHHHHHHh--CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999998764   445666666443  24799999999999976  45566665543        6799999


Q ss_pred             CCHHHHHHHHHHHHh
Q psy11510        156 LNKQSKFQVLLNEVS  170 (171)
Q Consensus       156 ~~v~~~f~~l~~~i~  170 (171)
                      .|++++|+.+++.+.
T Consensus       193 ~gi~eL~~~l~~~~~  207 (535)
T 3dpu_A          193 DGVESIAKSLKSAVL  207 (535)
T ss_dssp             --CTTHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHh
Confidence            999999999988764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.85  E-value=1.2e-21  Score=148.35  Aligned_cols=122  Identities=20%  Similarity=0.212  Sum_probs=94.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH----------HHHHhh--
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS----------YWRNYF--   87 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~----------~~~~~~--   87 (171)
                      .+|+++|++|||||||++++.+                   +...+..+.+||+||+..+..          +...++  
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~   81 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID   81 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence            3899999999999999999998                   233456889999999887764          566677  


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHHHHHHH-----HhhhccCCCH
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA----LTPEDIKNVS-----EKATKVKLNK  158 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~-----~~sa~~~~~v  158 (171)
                      +++|++++|+|+++.++...+.   ..+.+    .++|+++|+||+|+...    ...+.+.+.+     ++||++|.|+
T Consensus        82 ~~~d~vi~VvDas~~~~~~~l~---~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi  154 (256)
T 3iby_A           82 LEYDCIINVIDACHLERHLYLT---SQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI  154 (256)
T ss_dssp             SCCSEEEEEEEGGGHHHHHHHH---HHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred             CCCCEEEEEeeCCCchhHHHHH---HHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence            8899999999999876654433   33322    37999999999998641    3344444443     6799999999


Q ss_pred             HHHHHHHHH
Q psy11510        159 QSKFQVLLN  167 (171)
Q Consensus       159 ~~~f~~l~~  167 (171)
                      +++|+.+.+
T Consensus       155 ~el~~~i~~  163 (256)
T 3iby_A          155 PALQQSLLH  163 (256)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999875

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.85  E-value=1.4e-21  Score=149.38  Aligned_cols=126  Identities=21%  Similarity=0.192  Sum_probs=95.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH----------HHHHhh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS----------YWRNYF   87 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~----------~~~~~~   87 (171)
                      ++++|+++|.+|||||||++++.+                   +...+..+.+||+||+..+..          ++..++
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~   81 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI   81 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence            568999999999999999999998                   333456789999999887662          334443


Q ss_pred             --hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC----CCHHHHHHHH-----HhhhccCC
Q psy11510         88 --ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA----LTPEDIKNVS-----EKATKVKL  156 (171)
Q Consensus        88 --~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~-----~~sa~~~~  156 (171)
                        +++|++++|+|+++.++...+..++...       ++|+++|+||+|+.+.    ...+.+.+..     ++||++|.
T Consensus        82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~  154 (274)
T 3i8s_A           82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR  154 (274)
T ss_dssp             HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred             hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence              6899999999999866554443333322       7999999999998642    2334444443     67999999


Q ss_pred             CHHHHHHHHHHHH
Q psy11510        157 NKQSKFQVLLNEV  169 (171)
Q Consensus       157 ~v~~~f~~l~~~i  169 (171)
                      |++++|+.+.+.+
T Consensus       155 gi~el~~~i~~~~  167 (274)
T 3i8s_A          155 GIEALKLAIDRYK  167 (274)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999987643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.85  E-value=2.9e-21  Score=147.53  Aligned_cols=124  Identities=17%  Similarity=0.234  Sum_probs=96.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh------HHHHHhhh--C
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR------SYWRNYFE--S   89 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~------~~~~~~~~--~   89 (171)
                      ..++|+++|++|||||||++++.+                   +.. +..+.+||+||+..+.      .++..|+.  +
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~   80 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR   80 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence            457999999999999999999997                   122 5578999999998875      46677776  6


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH-----HhhhccCCCHHH
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS-----EKATKVKLNKQS  160 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~-----~~sa~~~~~v~~  160 (171)
                      +|++++|+|+++.++.   ..|...+.+    .++|+++|+||+|+..    ....+.+.+.+     ++||++|.|+++
T Consensus        81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~e  153 (272)
T 3b1v_A           81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQ  153 (272)
T ss_dssp             CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred             CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHH
Confidence            9999999999886544   345555543    4799999999999854    22334444433     679999999999


Q ss_pred             HHHHHHHH
Q psy11510        161 KFQVLLNE  168 (171)
Q Consensus       161 ~f~~l~~~  168 (171)
                      +|+.+++.
T Consensus       154 l~~~i~~~  161 (272)
T 3b1v_A          154 VVKKAAHT  161 (272)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHHH
Confidence            99999874

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.85  E-value=3.1e-21  Score=149.33  Aligned_cols=130  Identities=15%  Similarity=0.141  Sum_probs=97.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc--------hhHHHHHhh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS--------LRSYWRNYF   87 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~--------~~~~~~~~~   87 (171)
                      .+..+|+++|.+|||||||++++.+                    ....+..+.+|||||...        +......++
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            4566899999999999999999998                    123467899999999876        455667788


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHHH------HHhhhccCCCHH
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT--PEDIKNV------SEKATKVKLNKQ  159 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~~------~~~sa~~~~~v~  159 (171)
                      +++|++++|+|++++.+..  ..|+...+... .+++|+++|+||+|+.....  .+.+..+      .++||++|.|++
T Consensus        85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~  161 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVA  161 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHH
T ss_pred             hcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHH
Confidence            9999999999998865443  34544443332 24799999999999975322  1222221      256899999999


Q ss_pred             HHHHHHHHH
Q psy11510        160 SKFQVLLNE  168 (171)
Q Consensus       160 ~~f~~l~~~  168 (171)
                      ++|+.+.+.
T Consensus       162 ~l~~~l~~~  170 (301)
T 1wf3_A          162 ELKADLLAL  170 (301)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999998764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.85  E-value=5.2e-21  Score=154.87  Aligned_cols=154  Identities=14%  Similarity=0.123  Sum_probs=112.8

Q ss_pred             eeccceeeeccceecccc-------cccCC------CCCceeEEEEEeCCCCcHHHHHHHHhc-----------------
Q psy11510         11 DVGGQKSLRSYSYYGMGM-------LRHRP------QVSNVAVVSLLRNKNGGETLILKKKKM-----------------   60 (171)
Q Consensus        11 ~~~~~~~~~~~~~~~m~~-------~~~~~------~~~~~~ki~liG~~~~GKttli~~~~~-----------------   60 (171)
                      .+|..+.++.+|.++.|.       .+...      .....+||+++|.+|||||||++++.+                 
T Consensus       135 ~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~  214 (436)
T 2hjg_A          135 SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAV  214 (436)
T ss_dssp             GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------C
T ss_pred             HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeee
Confidence            344456677777666654       11111      123569999999999999999999997                 


Q ss_pred             ---cccCceEEEEEecCCc----------cchhHHHH-HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeE
Q psy11510         61 ---IMTFRFKLNIWDVGGQ----------KSLRSYWR-NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL  126 (171)
Q Consensus        61 ---~~~~~~~~~i~d~~g~----------~~~~~~~~-~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~  126 (171)
                         +..++..+.+|||||+          +.|..+.. .+++.+|++++|+|++++.+++.. .|+..+..    .++|+
T Consensus       215 ~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~i  289 (436)
T 2hjg_A          215 DTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAV  289 (436)
T ss_dssp             CEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEE
T ss_pred             EEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcE
Confidence               2334567899999997          56665544 478899999999999998888765 45555532    57999


Q ss_pred             EEEEeCCCCCCCCC--HHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510        127 LVFANKQDIEGALT--PEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       127 ivv~nK~Dl~~~~~--~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ++|+||+|+.+...  .+++.+.+             ++||++|.|++++|+.+.+.+
T Consensus       290 iiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~  347 (436)
T 2hjg_A          290 VIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS  347 (436)
T ss_dssp             EEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             EEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence            99999999976322  33332222             569999999999999988764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.84  E-value=2.9e-21  Score=157.74  Aligned_cols=131  Identities=15%  Similarity=0.097  Sum_probs=90.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHH--------Hhh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWR--------NYF   87 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~--------~~~   87 (171)
                      ++.++|+++|.+|||||||++++.+                    +...+..+.+|||||++.+...+.        .++
T Consensus       231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            3568999999999999999999987                    334567899999999987665443        357


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH--HHHH-----HHhhhccCCCHHH
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED--IKNV-----SEKATKVKLNKQS  160 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~--~~~~-----~~~sa~~~~~v~~  160 (171)
                      +++|++++|+|++++.+++++..+. .++...  .++|+++|+||+|+.+....+.  +.+.     .++||++|.|+++
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~-~~l~~l--~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~e  387 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIR-ELKAAH--PAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDT  387 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHH-HHHHHC--TTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHH-HHHHhc--CCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHH
Confidence            8999999999999988875432222 222222  3799999999999987443322  3222     3679999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +|+.+.+.+
T Consensus       388 L~~~i~~~~  396 (476)
T 3gee_A          388 LKQHMGDLV  396 (476)
T ss_dssp             HHHHHTHHH
T ss_pred             HHHHHHHHH
Confidence            999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.84  E-value=1.8e-21  Score=143.50  Aligned_cols=130  Identities=9%  Similarity=0.081  Sum_probs=94.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cc-cCceEEEEEecCC----------ccchhHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IM-TFRFKLNIWDVGG----------QKSLRSY   82 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~-~~~~~~~i~d~~g----------~~~~~~~   82 (171)
                      ..+.++|+++|..|||||||++++.+                     .. .....+.+|||||          ++.+..+
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            45689999999999999999999987                     11 3346789999999          4555667


Q ss_pred             HHHhhhC---CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH----HH----HHHH----
Q psy11510         83 WRNYFES---TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP----ED----IKNV----  147 (171)
Q Consensus        83 ~~~~~~~---~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~----~~----~~~~----  147 (171)
                      ...+++.   +|++++|+|+++..+.. ...++..+ ..   .++|+++|+||+|+......    ++    +...    
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l-~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  180 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWF-AP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG  180 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHH-GG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHH-Hh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence            7777776   78899999998754322 22333333 22   47899999999999763221    11    1121    


Q ss_pred             -------HHhhhccCCCHHHHHHHHHHHH
Q psy11510        148 -------SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       148 -------~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                             .++||++|.|++++|+.+.+.+
T Consensus       181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~  209 (223)
T 4dhe_A          181 YAGKLTVQLFSALKRTGLDDAHALIESWL  209 (223)
T ss_dssp             CCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence                   2469999999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=1.9e-20  Score=152.37  Aligned_cols=155  Identities=14%  Similarity=0.134  Sum_probs=112.8

Q ss_pred             eeeccceeeeccceecccc----------ccc---CCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------
Q psy11510         10 WDVGGQKSLRSYSYYGMGM----------LRH---RPQVSNVAVVSLLRNKNGGETLILKKKKM----------------   60 (171)
Q Consensus        10 ~~~~~~~~~~~~~~~~m~~----------~~~---~~~~~~~~ki~liG~~~~GKttli~~~~~----------------   60 (171)
                      |.++..+.+..+|.++.|.          +..   .......+||+++|.+|+|||||++++.+                
T Consensus       154 ~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~  233 (456)
T 4dcu_A          154 YSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDA  233 (456)
T ss_dssp             GGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CT
T ss_pred             HHcCCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEE
Confidence            4455666677777666554          111   11135679999999999999999999996                


Q ss_pred             ----cccCceEEEEEecCC----------ccchhHHHHH-hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe
Q psy11510         61 ----IMTFRFKLNIWDVGG----------QKSLRSYWRN-YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT  125 (171)
Q Consensus        61 ----~~~~~~~~~i~d~~g----------~~~~~~~~~~-~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p  125 (171)
                          +...+..+.+|||||          ++.|..+... +++.+|++++|+|+++..+.. ...|+..+. .   .++|
T Consensus       234 ~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~-~---~~~~  308 (456)
T 4dcu_A          234 VDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAH-E---AGKA  308 (456)
T ss_dssp             TSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHH-H---TTCE
T ss_pred             EEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHH-H---cCCC
Confidence                334556889999999          7888777664 788999999999998854422 233344442 2   5799


Q ss_pred             EEEEEeCCCCCCC--CCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510        126 LLVFANKQDIEGA--LTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       126 ~ivv~nK~Dl~~~--~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +++|+||+|+.+.  ...+++.+.+             ++||++|.|++++|+.+.+.+
T Consensus       309 ~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~  367 (456)
T 4dcu_A          309 VVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS  367 (456)
T ss_dssp             EEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             EEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence            9999999999752  3334444433             459999999999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.84  E-value=2.3e-20  Score=142.30  Aligned_cols=127  Identities=18%  Similarity=0.144  Sum_probs=98.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH------HHHHhh--hC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS------YWRNYF--ES   89 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~   89 (171)
                      +.++|+++|++|||||||++++.+                   ....+..+.+||+||+..+..      .+..++  .+
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   81 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN   81 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence            468999999999999999999998                   233456789999999988766      666776  68


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH-----HhhhccCCCHHH
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG----ALTPEDIKNVS-----EKATKVKLNKQS  160 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~-----~~sa~~~~~v~~  160 (171)
                      +|++++|+|+++..   ....++..+.+.   ..+|+++|+||+|+.+    ....+.+.+.+     ++||++|.|+++
T Consensus        82 ~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~  155 (271)
T 3k53_A           82 ADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE  155 (271)
T ss_dssp             CSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred             CcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence            99999999998853   333445555432   2399999999999753    23444455444     679999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +|+.+.+.+
T Consensus       156 l~~~i~~~~  164 (271)
T 3k53_A          156 LKRMIALMA  164 (271)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.83  E-value=4.2e-20  Score=148.19  Aligned_cols=134  Identities=18%  Similarity=0.186  Sum_probs=104.5

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhcc---------------------------------------ccCceEEEEEec
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKMI---------------------------------------MTFRFKLNIWDV   73 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~~---------------------------------------~~~~~~~~i~d~   73 (171)
                      +..++.++|+++|..|+|||||++++.+.                                       ......+.+||+
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            34678899999999999999999999860                                       001168999999


Q ss_pred             CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH-
Q psy11510         74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS-  148 (171)
Q Consensus        74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~-  148 (171)
                      ||+++|...+..++..+|++++|+|+++..++.+..+++..+...   ...|+++|+||+|+.+...    .+++.+.+ 
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999987677777766554322   2368999999999976321    12233322 


Q ss_pred             ----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        149 ----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       149 ----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                                ++||++|.|++++++.+.+.+
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence                      459999999999999998754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.83  E-value=1.4e-19  Score=143.08  Aligned_cols=132  Identities=15%  Similarity=0.145  Sum_probs=100.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh---------HHHHHhh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR---------SYWRNYF   87 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~---------~~~~~~~   87 (171)
                      ...++|+++|.+|||||||++++.+                   .......+.+|||||.....         .....+.
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~  244 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR  244 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence            5678999999999999999999997                   12234568999999975431         1222445


Q ss_pred             hCCCEEEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCC
Q psy11510         88 ESTDGLIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLN  157 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~  157 (171)
                      ..+|++++|+|+++..  +++....|+..+....  .+.|+++|+||+|+......+++...+        ++||++|+|
T Consensus       245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g  322 (357)
T 2e87_A          245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG  322 (357)
T ss_dssp             GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred             hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence            5799999999998877  6777778888775532  289999999999997632223333332        569999999


Q ss_pred             HHHHHHHHHHHH
Q psy11510        158 KQSKFQVLLNEV  169 (171)
Q Consensus       158 v~~~f~~l~~~i  169 (171)
                      ++++|+.+++.+
T Consensus       323 i~~l~~~i~~~l  334 (357)
T 2e87_A          323 IDLVKEEIIKTL  334 (357)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.83  E-value=3e-20  Score=151.91  Aligned_cols=126  Identities=19%  Similarity=0.194  Sum_probs=99.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc-chh--------HHHHHhh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK-SLR--------SYWRNYF   87 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~-~~~--------~~~~~~~   87 (171)
                      ..++|+++|.+|||||||++++.+                    +..++..+.+|||+|.. .+.        .....++
T Consensus       242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            348999999999999999999987                    23356789999999987 543        2345678


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------HhhhccCCCHHH
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------EKATKVKLNKQS  160 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~sa~~~~~v~~  160 (171)
                      +.+|++++|+|++++.+++... ++. .+     .++|+++|+||+|+.+..+.+++.++.       ++||++|.|+++
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~-il~-~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~e  394 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRK-ILE-RI-----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEK  394 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH-HHH-HH-----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHH
T ss_pred             hcccEEEEEecCCCCCCHHHHH-HHH-Hh-----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHH
Confidence            8999999999999988776532 222 22     478999999999998766666665543       579999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +|+.+.+.+
T Consensus       395 L~~~l~~~~  403 (482)
T 1xzp_A          395 LEESIYRET  403 (482)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.82  E-value=4.2e-20  Score=149.70  Aligned_cols=124  Identities=15%  Similarity=0.271  Sum_probs=93.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc---------hhHHHHHhhhCC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS---------LRSYWRNYFEST   90 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~~   90 (171)
                      +|+++|.+|||||||++++.+                    ....+..+.+|||||++.         +...+..+++++
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a   82 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   82 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence            799999999999999999997                    223456789999999764         345677889999


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH-HHHH--------HhhhccCCCHHHH
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI-KNVS--------EKATKVKLNKQSK  161 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~-~~~~--------~~sa~~~~~v~~~  161 (171)
                      |++++|+|++++.+...  .++..++..   .++|+++|+||+|+.+.. ..++ .++.        ++||++|.|+.++
T Consensus        83 d~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L  156 (439)
T 1mky_A           83 DLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELYSLGFGEPIPVSAEHNINLDTM  156 (439)
T ss_dssp             SEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHGGGSSCSCEECBTTTTBSHHHH
T ss_pred             CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHHhcCCCCEEEEeccCCCCHHHH
Confidence            99999999987655432  233343332   378999999999985421 1222 2222        4699999999999


Q ss_pred             HHHHHHHH
Q psy11510        162 FQVLLNEV  169 (171)
Q Consensus       162 f~~l~~~i  169 (171)
                      |+.+++.+
T Consensus       157 ~~~i~~~l  164 (439)
T 1mky_A          157 LETIIKKL  164 (439)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99998765

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.82  E-value=1.3e-20  Score=151.64  Aligned_cols=128  Identities=15%  Similarity=0.054  Sum_probs=97.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCc-eEEEEEecCCccchhHH-------HHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFR-FKLNIWDVGGQKSLRSY-------WRNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~-~~~~i~d~~g~~~~~~~-------~~~~   86 (171)
                      ..+.++|+++|..|+|||||++++.+                    +.... ..+.+|||||++++..+       +..+
T Consensus        31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            56789999999999999999999987                    11122 27899999999876543       4567


Q ss_pred             hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCH
Q psy11510         87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNK  158 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v  158 (171)
                      +.++|++++|+|++...   ....|+..+.+    .++|+++|+||+|+......+...++.        ++||++|.|+
T Consensus       111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI  183 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTP---YEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGF  183 (423)
T ss_dssp             HTSCSEEEEECSSSCCH---HHHHHHHHHHH----TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred             HhcCCEEEEEEeCCChH---HHHHHHHHHHh----cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence            88999999999984332   33455555533    279999999999998754433333222        6799999999


Q ss_pred             HHHHHHHHHHH
Q psy11510        159 QSKFQVLLNEV  169 (171)
Q Consensus       159 ~~~f~~l~~~i  169 (171)
                      +++|+.+.+.+
T Consensus       184 ~eL~~~L~~~l  194 (423)
T 3qq5_A          184 DDIGKTISEIL  194 (423)
T ss_dssp             TTHHHHHHHHS
T ss_pred             HHHHHHHHHhh
Confidence            99999998875

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.81  E-value=3.3e-20  Score=150.20  Aligned_cols=127  Identities=17%  Similarity=0.225  Sum_probs=91.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc--------chhHHHHHhhhC
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK--------SLRSYWRNYFES   89 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~--------~~~~~~~~~~~~   89 (171)
                      ..+|+++|.+|||||||++++.+                    ....+..+.+|||+|++        .+...+..++++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   82 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE   82 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            36899999999999999999988                    22345678999999985        566778888999


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC-CHHHH-----HHHHHhhhccCCCHHHHHH
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL-TPEDI-----KNVSEKATKVKLNKQSKFQ  163 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~-~~~~~-----~~~~~~sa~~~~~v~~~f~  163 (171)
                      +|++++|+|++++.+...  .++..++..   .++|+++|+||+|+.... ...+.     .+..++||++|.|+.++++
T Consensus        83 ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~  157 (436)
T 2hjg_A           83 ADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLD  157 (436)
T ss_dssp             CSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHH
T ss_pred             CCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHH
Confidence            999999999988766543  345555443   578999999999986521 00000     1223679999999999999


Q ss_pred             HHHHHH
Q psy11510        164 VLLNEV  169 (171)
Q Consensus       164 ~l~~~i  169 (171)
                      .+.+.+
T Consensus       158 ~i~~~l  163 (436)
T 2hjg_A          158 AVAEHF  163 (436)
T ss_dssp             HHHHTG
T ss_pred             HHHHhc
Confidence            998754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.80  E-value=4.8e-20  Score=150.00  Aligned_cols=127  Identities=15%  Similarity=0.166  Sum_probs=88.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHH--------hh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRN--------YF   87 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~--------~~   87 (171)
                      ++.++|+++|.+|||||||++++.+                    +..++..+.+|||+|...+...++.        ++
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            3568999999999999999999987                    3445678999999998765544333        56


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHH------HHHHHhhhccCCCHHHH
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDI------KNVSEKATKVKLNKQSK  161 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~------~~~~~~sa~~~~~v~~~  161 (171)
                      +.+|++++|+|++++.+... ..++..+      .+.|+++|+||+|+......+.+      ....++||++|.|++++
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL  374 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSL  374 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHH
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHH
Confidence            78999999999998776654 3444444      24799999999999763211111      12347899999999999


Q ss_pred             HHHHHHHH
Q psy11510        162 FQVLLNEV  169 (171)
Q Consensus       162 f~~l~~~i  169 (171)
                      |+.+.+.+
T Consensus       375 ~~~i~~~~  382 (462)
T 3geh_A          375 ETAILEIV  382 (462)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998765

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.80  E-value=1e-18  Score=145.90  Aligned_cols=129  Identities=13%  Similarity=0.212  Sum_probs=100.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------------------------c-----ccCceEEEEEecCCc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------------------------I-----MTFRFKLNIWDVGGQ   76 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------------------------~-----~~~~~~~~i~d~~g~   76 (171)
                      .+..+|+++|..++|||||+++++.                                  +     ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            4578999999999999999999964                                  0     122367899999999


Q ss_pred             cchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH---------
Q psy11510         77 KSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV---------  147 (171)
Q Consensus        77 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~---------  147 (171)
                      .+|...+..+++.+|++++|+|+++..+.+....|.... .    .++|+++|+||+|+.+....+...+.         
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~  158 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPE  158 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcc
Confidence            999998899999999999999999988777766665444 2    47999999999999874322212222         


Q ss_pred             --HHhhhccCCCHHHHHHHHHHHH
Q psy11510        148 --SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       148 --~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                        ...||++|.|++++|+.+++.+
T Consensus       159 ~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          159 EAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             GCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             cEEEEEeecCCCchHHHHHHHHhc
Confidence              2459999999999999998764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.80  E-value=9.5e-20  Score=143.18  Aligned_cols=132  Identities=17%  Similarity=0.152  Sum_probs=99.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCcc----chhHHHHHhhh---CCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQK----SLRSYWRNYFE---STD   91 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~----~~~~~~~~~~~---~~~   91 (171)
                      .+|+++|.+|||||||++++.+                   +..+ ...+.+||+||..    .+..+...|++   .++
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            3688999999999999999997                   1222 2678999999953    33445555554   599


Q ss_pred             EEEEEEeCCC---hhhHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCC-CHHHHHHH-------HHhhhccCCCHH
Q psy11510         92 GLIWVVDSAD---KRRLEDCARELHELLQEER-LAGATLLVFANKQDIEGAL-TPEDIKNV-------SEKATKVKLNKQ  159 (171)
Q Consensus        92 ~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~~~-~~~~~~~~-------~~~sa~~~~~v~  159 (171)
                      ++++|+|+++   .++++.+..|+.++..... ..++|+++|+||+|+.+.. ..+++.+.       .++||+++.|++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~  318 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLR  318 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTH
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHH
Confidence            9999999998   7889888888888755321 3589999999999997521 11222222       256999999999


Q ss_pred             HHHHHHHHHHh
Q psy11510        160 SKFQVLLNEVS  170 (171)
Q Consensus       160 ~~f~~l~~~i~  170 (171)
                      ++|+.+.+.+.
T Consensus       319 eL~~~l~~~l~  329 (342)
T 1lnz_A          319 ELLFEVANQLE  329 (342)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHh
Confidence            99999988763

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.79  E-value=6.6e-19  Score=147.11  Aligned_cols=128  Identities=16%  Similarity=0.248  Sum_probs=98.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc----------------------------------c-----ccCceEEEEEecCCcc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM----------------------------------I-----MTFRFKLNIWDVGGQK   77 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~----------------------------------~-----~~~~~~~~i~d~~g~~   77 (171)
                      +..+|+++|..++|||||+++++.                                  +     ++....+++|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            567999999999999999999964                                  1     1224788999999999


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH---HHHHHH------
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE---DIKNVS------  148 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~~~~~------  148 (171)
                      +|...+..+++.+|++++|+|+++..+.+....|.... .    .++|+++|+||+|+.+....+   ++.+.+      
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~  157 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATD  157 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTT
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcce
Confidence            99999999999999999999999987777666665444 2    478999999999998743322   222221      


Q ss_pred             --HhhhccCCCHHHHHHHHHHHH
Q psy11510        149 --EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       149 --~~sa~~~~~v~~~f~~l~~~i  169 (171)
                        ..||++|.|++++|+.+.+.+
T Consensus       158 vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          158 AVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             CEEECTTTCTTHHHHHHHHHHHS
T ss_pred             EEEeecccCCCchhHHHHHhhcC
Confidence              459999999999999998764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.78  E-value=5.7e-18  Score=139.86  Aligned_cols=98  Identities=15%  Similarity=0.206  Sum_probs=81.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEecC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDVG   74 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~~   74 (171)
                      .+..+|+++|.+|+|||||+++++.                                         +...+..+++||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            4578999999999999999999951                                         34456889999999


Q ss_pred             CccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         75 GQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        75 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      |+.+|...+..+++.+|++++|+|+++..+......| ..+.    ..++|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~----~~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR----LRHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH----TTTCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH----HcCCCEEEEEeCCCCccc
Confidence            9999999999999999999999999987766655433 3332    247999999999999753

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.77  E-value=2.1e-18  Score=130.33  Aligned_cols=132  Identities=12%  Similarity=0.105  Sum_probs=89.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchh-----------HH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLR-----------SY   82 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~-----------~~   82 (171)
                      ..+.++|+++|.+|||||||++++.+                     ....+..+.+|||||...+.           ..
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            45679999999999999999999987                     12234678999999976542           12


Q ss_pred             HHHhhhCCCEEEEEEeCCChhhH-HHHHHHHHHHHhccccCCCeEEEEEe-CCCCCCCCCHHH---------HHHH----
Q psy11510         83 WRNYFESTDGLIWVVDSADKRRL-EDCARELHELLQEERLAGATLLVFAN-KQDIEGALTPED---------IKNV----  147 (171)
Q Consensus        83 ~~~~~~~~~~ii~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~~p~ivv~n-K~Dl~~~~~~~~---------~~~~----  147 (171)
                      ...+++.+|++++|+|+++.... ..+..++..+....  ...|.+++.| |+|+.+. ...+         +...    
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~  175 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC  175 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence            23467899999999999863222 23334444443211  1345555555 9999753 2222         1111    


Q ss_pred             ---------HHhhhccCCCHHHHHHHHHHHH
Q psy11510        148 ---------SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       148 ---------~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                               .++||++|.|++++|+.+.+.+
T Consensus       176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~  206 (260)
T 2xtp_A          176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLL  206 (260)
T ss_dssp             TTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence                     2458899999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.77  E-value=3.9e-19  Score=144.61  Aligned_cols=128  Identities=16%  Similarity=0.222  Sum_probs=93.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCC--------ccchhHHHHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGG--------QKSLRSYWRNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g--------~~~~~~~~~~~   86 (171)
                      ..+..+|+++|.+|||||||++++.+                    ....+..+.+|||||        ++.+...+..+
T Consensus        20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            34467999999999999999999998                    333456789999999        77888888999


Q ss_pred             hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH--------HHhhhccCCCH
Q psy11510         87 FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV--------SEKATKVKLNK  158 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~--------~~~sa~~~~~v  158 (171)
                      ++++|++++|+|..+..+.  ...++..++..   .++|+++|+||+|+.+..  ++..++        ...||++|.|+
T Consensus       100 ~~~ad~il~VvD~~~~~~~--~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~~~~iSA~~g~gv  172 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGEPYPISGTHGLGL  172 (456)
T ss_dssp             HHHCSEEEEEEESSSCSCH--HHHHHHHHHTT---CCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTH
T ss_pred             HhhCCEEEEEEeCCCCCCh--HHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHHcCCCceEEeecccccch
Confidence            9999999999998764333  33455555544   589999999999986521  111111        25699999999


Q ss_pred             HHHHHHHHHHH
Q psy11510        159 QSKFQVLLNEV  169 (171)
Q Consensus       159 ~~~f~~l~~~i  169 (171)
                      .++++.+.+.+
T Consensus       173 ~~L~~~i~~~l  183 (456)
T 4dcu_A          173 GDLLDAVAEHF  183 (456)
T ss_dssp             HHHHHHHHTTG
T ss_pred             HHHHHHHHhhc
Confidence            99999987643

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.76  E-value=9.7e-20  Score=150.28  Aligned_cols=128  Identities=16%  Similarity=0.147  Sum_probs=98.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------cc-cCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +..+|+++|..++|||||++++.+                   .. ..+..+.+|||||++.|..++..+++.+|++++|
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            567899999999999999999986                   11 1345789999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC---CHHHHHH-------------HHHhhhccCCCHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL---TPEDIKN-------------VSEKATKVKLNKQS  160 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~---~~~~~~~-------------~~~~sa~~~~~v~~  160 (171)
                      +|+++....+.... +..+.    ..++|+++++||+|+++..   ..+++..             +.++||++|.|+++
T Consensus        83 VDa~dg~~~qt~e~-l~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           83 VAADDGVMKQTVES-IQHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             CBSSSCCCHHHHHH-HHHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EECCCCccHHHHHH-HHHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            99998655544332 22222    2478999999999997521   1122222             23679999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +|+.+...+
T Consensus       158 Lle~I~~l~  166 (537)
T 3izy_P          158 LAEATIALA  166 (537)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999987653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.76  E-value=1.3e-17  Score=133.94  Aligned_cols=128  Identities=16%  Similarity=0.149  Sum_probs=91.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------c--c------------------------cC----ceEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------I--M------------------------TF----RFKLN   69 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------~--~------------------------~~----~~~~~   69 (171)
                      .++.++|+++|..++|||||++++.+               +  .                        ..    ...+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            45789999999999999999999984               0  0                        00    16799


Q ss_pred             EEecCCccchhHHHHHhhhCCCEEEEEEeCCC----hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CH
Q psy11510         70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL----TP  141 (171)
Q Consensus        70 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~----~~  141 (171)
                      +||+||+++|...+......+|++++|+|+++    +++++.+..+     ..  ....|+++++||+|+.+..    ..
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-----~~--l~~~~iivv~NK~Dl~~~~~~~~~~  157 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-----EI--LGIDKIIIVQNKIDLVDEKQAEENY  157 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-----HH--TTCCCEEEEEECTTSSCTTTTTTHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-----HH--cCCCeEEEEEEccCCCCHHHHHHHH
Confidence            99999999998877777788999999999985    4455544321     11  1235899999999997632    23


Q ss_pred             HHHHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        142 EDIKNVS-----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       142 ~~~~~~~-----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +++.+++           +.||++|.|++++++.+.+.+
T Consensus       158 ~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          158 EQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             HHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            4555553           459999999999999998654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.76  E-value=7.3e-18  Score=136.54  Aligned_cols=153  Identities=13%  Similarity=0.151  Sum_probs=102.9

Q ss_pred             eccceeeeccceecccc----------cccCC-------CCCceeEEEEEeCCCCcHHHHHHHHhc--------------
Q psy11510         12 VGGQKSLRSYSYYGMGM----------LRHRP-------QVSNVAVVSLLRNKNGGETLILKKKKM--------------   60 (171)
Q Consensus        12 ~~~~~~~~~~~~~~m~~----------~~~~~-------~~~~~~ki~liG~~~~GKttli~~~~~--------------   60 (171)
                      +|..+.++.+|.++.|.          +....       .....+||+++|++|||||||++++.+              
T Consensus       137 lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~  216 (439)
T 1mky_A          137 LGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR  216 (439)
T ss_dssp             GSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC----
T ss_pred             cCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcC
Confidence            44446677777666655          11111       123468999999999999999999987              


Q ss_pred             ------cccCceEEEEEecCCccchhHHH------------HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccC
Q psy11510         61 ------IMTFRFKLNIWDVGGQKSLRSYW------------RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA  122 (171)
Q Consensus        61 ------~~~~~~~~~i~d~~g~~~~~~~~------------~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~  122 (171)
                            +...+..+.+|||+|..+.....            ..+++.+|++++|+|+++..+.+..  ++...+..   .
T Consensus       217 d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~  291 (439)
T 1mky_A          217 DPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---R  291 (439)
T ss_dssp             --CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---T
T ss_pred             CceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---c
Confidence                  12244578899999975443221            3456789999999999887666542  23333332   5


Q ss_pred             CCeEEEEEeCCCCCCC--CCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510        123 GATLLVFANKQDIEGA--LTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       123 ~~p~ivv~nK~Dl~~~--~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ++|+++|+||+|+.+.  ...+++.+..             ++||++|.|++++|+.+.+.+
T Consensus       292 ~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~  353 (439)
T 1mky_A          292 GRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  353 (439)
T ss_dssp             TCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            7999999999999763  2233332221             469999999999999987653

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.76  E-value=7.3e-18  Score=138.00  Aligned_cols=127  Identities=14%  Similarity=0.155  Sum_probs=97.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------cccCceEEEEEecCCccchhHHHHHhhh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFE   88 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~   88 (171)
                      ..+.++|+++|..++|||||++++.+                          +..++..+.+||+||+++|...+..++.
T Consensus        16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~   95 (482)
T 1wb1_A           16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   95 (482)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHh
Confidence            45689999999999999999999975                          1124568999999999999888888899


Q ss_pred             CCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH------------H
Q psy11510         89 STDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS------------E  149 (171)
Q Consensus        89 ~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~------------~  149 (171)
                      .+|++++|+|+++   +++++.+.     ++..   .++|.++|+||+|+.+...    .+++.+++            .
T Consensus        96 ~aD~~ilVvda~~g~~~qt~e~l~-----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~  167 (482)
T 1wb1_A           96 IIDLALIVVDAKEGPKTQTGEHML-----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP  167 (482)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHHH-----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred             hCCEEEEEEecCCCccHHHHHHHH-----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence            9999999999988   55554432     1122   3688899999999976211    12233322            3


Q ss_pred             hhhccCCCHHHHHHHHHHHH
Q psy11510        150 KATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       150 ~sa~~~~~v~~~f~~l~~~i  169 (171)
                      .||++|.|++++++.+.+.+
T Consensus       168 vSA~~g~gI~~L~~~L~~~i  187 (482)
T 1wb1_A          168 ISAKTGFGVDELKNLIITTL  187 (482)
T ss_dssp             CCTTTCTTHHHHHHHHHHHH
T ss_pred             EECcCCCCHHHHHHHHHHhh
Confidence            48999999999999998754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.75  E-value=3.9e-18  Score=127.43  Aligned_cols=133  Identities=13%  Similarity=0.086  Sum_probs=84.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCc-----------cchhHH
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQ-----------KSLRSY   82 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~-----------~~~~~~   82 (171)
                      ..+.++|+++|.+|||||||++++.+                     ....+..+.+|||||.           +.+...
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~  105 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC  105 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence            56789999999999999999999998                     2234567899999993           334445


Q ss_pred             HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccc-cCCCeEEEEEeCCCCCCCCCH--------HHHHHHHHh---
Q psy11510         83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEER-LAGATLLVFANKQDIEGALTP--------EDIKNVSEK---  150 (171)
Q Consensus        83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~~~~~--------~~~~~~~~~---  150 (171)
                      +..+++++|++++|+|+++....  ...++..+..... ....|+++|+||+|+.+....        +.+.+..+.   
T Consensus       106 ~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~  183 (239)
T 3lxx_A          106 ILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD  183 (239)
T ss_dssp             HHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred             HHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence            55566789999999998764331  1222333322110 124699999999998653221        133333321   


Q ss_pred             ----------hhccCCCHHHHHHHHHHHH
Q psy11510        151 ----------ATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       151 ----------sa~~~~~v~~~f~~l~~~i  169 (171)
                                ++.+..++.++|+.+.+.+
T Consensus       184 ~~~~~~~~~~~~~~~~~v~~ll~~i~~~~  212 (239)
T 3lxx_A          184 RYCALNNKATGAEQEAQRAQLLGLIQRVV  212 (239)
T ss_dssp             SEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence                      2233468888888776543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.75  E-value=2.3e-18  Score=141.03  Aligned_cols=124  Identities=15%  Similarity=0.070  Sum_probs=87.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .++.+||+++|..++|||||+++++.                                                  +...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            45789999999999999999999853                                                  2235


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHH-----HHHHHHHHhccccCCCeEEEEEeCCCCCCC-
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC-----ARELHELLQEERLAGATLLVFANKQDIEGA-  138 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~-----~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~-  138 (171)
                      ...+.+|||||+++|...+..+++.+|++++|+|++++.++..+     ..+...+...  ....|+++|+||+|+.+. 
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvviNK~Dl~~~~  187 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIAMNKMDNVDWS  187 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEEEECcCcccch
Confidence            56899999999999999999999999999999999987543221     1111222222  123579999999999762 


Q ss_pred             -CCHHH----HHHHH-------------HhhhccCCCHHH
Q psy11510        139 -LTPED----IKNVS-------------EKATKVKLNKQS  160 (171)
Q Consensus       139 -~~~~~----~~~~~-------------~~sa~~~~~v~~  160 (171)
                       ...++    +..++             ++||++|.|+.+
T Consensus       188 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          188 QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence             11122    22221             459999999985

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.74  E-value=2.6e-18  Score=132.91  Aligned_cols=126  Identities=13%  Similarity=0.130  Sum_probs=89.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc-chhH--------HHHHhh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK-SLRS--------YWRNYF   87 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~-~~~~--------~~~~~~   87 (171)
                      +..+|+++|.+|||||||++++.+                    ....+..+.+|||||.. ....        ....++
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l   86 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   86 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence            455899999999999999999998                    12245678999999987 3221        223456


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC-CC-HHHHHHHH---------HhhhccCC
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA-LT-PEDIKNVS---------EKATKVKL  156 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~-~~-~~~~~~~~---------~~sa~~~~  156 (171)
                      +.+|++++|+|+++   +.....++...+..   .+.|+++++||+|+... .. .+.+.++.         ..||+++.
T Consensus        87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~  160 (301)
T 1ega_A           87 GDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  160 (301)
T ss_dssp             CCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             hcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence            78999999999876   33333444444432   47899999999999761 11 12222222         34899999


Q ss_pred             CHHHHHHHHHHH
Q psy11510        157 NKQSKFQVLLNE  168 (171)
Q Consensus       157 ~v~~~f~~l~~~  168 (171)
                      |++++++.+.+.
T Consensus       161 ~v~~l~~~i~~~  172 (301)
T 1ega_A          161 NVDTIAAIVRKH  172 (301)
T ss_dssp             THHHHHHHHHTT
T ss_pred             CHHHHHHHHHHh
Confidence            999999998754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.74  E-value=1.1e-17  Score=134.30  Aligned_cols=130  Identities=13%  Similarity=0.113  Sum_probs=96.5

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhc---------------c--c------------------------cC----ceE
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKM---------------I--M------------------------TF----RFK   67 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~---------------~--~------------------------~~----~~~   67 (171)
                      ...++.++|+++|..++|||||++++.+               +  .                        ..    ...
T Consensus         5 ~~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~   84 (410)
T 1kk1_A            5 KSRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRR   84 (410)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEE
T ss_pred             ccCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccE
Confidence            3456789999999999999999999984               0  0                        00    167


Q ss_pred             EEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC----hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----
Q psy11510         68 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD----KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL----  139 (171)
Q Consensus        68 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~----~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~----  139 (171)
                      +.+||+||+++|.......+..+|++++|+|+++    +++.+.+..+ ..+      ...|+++|+||+|+.+..    
T Consensus        85 i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~------~~~~iivviNK~Dl~~~~~~~~  157 (410)
T 1kk1_A           85 VSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII------GQKNIIIAQNKIELVDKEKALE  157 (410)
T ss_dssp             EEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH------TCCCEEEEEECGGGSCHHHHHH
T ss_pred             EEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc------CCCcEEEEEECccCCCHHHHHH
Confidence            9999999999998777777788999999999985    4455544321 111      235899999999997632    


Q ss_pred             CHHHHHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        140 TPEDIKNVS-----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       140 ~~~~~~~~~-----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ..+++.+++           ..||++|.|++++++.+.+.+
T Consensus       158 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          158 NYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            123344443           448999999999999988654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.73  E-value=3.1e-17  Score=129.89  Aligned_cols=130  Identities=19%  Similarity=0.155  Sum_probs=92.9

Q ss_pred             eeE-EEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCc---------cchhHHHHHhhh
Q psy11510         38 VAV-VSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQ---------KSLRSYWRNYFE   88 (171)
Q Consensus        38 ~~k-i~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~---------~~~~~~~~~~~~   88 (171)
                      .++ |+++|.+|||||||++++.+                   +..++..+.+|||+|.         +.+...++ .+.
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~  256 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK  256 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence            455 99999999999999999998                   2223467899999996         22334433 467


Q ss_pred             CCCEEEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH---HH----HHH-------HHhhh
Q psy11510         89 STDGLIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE---DI----KNV-------SEKAT  152 (171)
Q Consensus        89 ~~~~ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~~----~~~-------~~~sa  152 (171)
                      .+|++++|+|++++.  ..+.+..+. .++......+.|+++|+||+|+......+   .+    ...       ..+||
T Consensus       257 ~aD~il~VvD~s~~~~~~~~~~~~~~-~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA  335 (364)
T 2qtf_A          257 YSDALILVIDSTFSENLLIETLQSSF-EILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISA  335 (364)
T ss_dssp             GSSEEEEEEETTSCHHHHHHHHHHHH-HHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBT
T ss_pred             hCCEEEEEEECCCCcchHHHHHHHHH-HHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence            899999999998876  455544433 33344344679999999999997632111   11    122       24699


Q ss_pred             ccCCCHHHHHHHHHHHH
Q psy11510        153 KVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       153 ~~~~~v~~~f~~l~~~i  169 (171)
                      +++.|++++++.+.+.+
T Consensus       336 ~~g~gi~~L~~~I~~~l  352 (364)
T 2qtf_A          336 LKRTNLELLRDKIYQLA  352 (364)
T ss_dssp             TTTBSHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHh
Confidence            99999999999998754

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.73  E-value=3.5e-17  Score=132.60  Aligned_cols=125  Identities=17%  Similarity=0.124  Sum_probs=90.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .++.++|+++|..++|||||+++++.                                                  +...
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            56789999999999999999999932                                                  2234


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---HH---HHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---LE---DCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      +..+.+|||||+++|...+..+++.+|++++|+|+++...   |+   +..+.+..+ .   ..++| +++|+||+|+..
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~---~~~v~~iIvviNK~Dl~~  169 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-K---TAGVKHLIVLINKMDDPT  169 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-H---HcCCCeEEEEeecCCCcc
Confidence            5689999999999999988899999999999999988532   11   222222222 1   13566 999999999964


Q ss_pred             CC-CH-------HHHHHH--------------HHhhhccCCCHHHHHH
Q psy11510        138 AL-TP-------EDIKNV--------------SEKATKVKLNKQSKFQ  163 (171)
Q Consensus       138 ~~-~~-------~~~~~~--------------~~~sa~~~~~v~~~f~  163 (171)
                      .. +.       +++.++              ...||++|.|+.++++
T Consensus       170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            21 11       122222              1459999999998654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.72  E-value=3.2e-18  Score=138.52  Aligned_cols=127  Identities=15%  Similarity=0.159  Sum_probs=91.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .++.++|+++|..++|||||++++..                                                  +...
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~   82 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK   82 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence            35689999999999999999999953                                                  1234


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhc---cccCC-CeEEEEEeCCCCCCC-C
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQE---ERLAG-ATLLVFANKQDIEGA-L  139 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~-~p~ivv~nK~Dl~~~-~  139 (171)
                      ...+.+|||||+++|...+..+++.+|++++|+|+++ .+|+....|..+..+.   ....+ .|+++++||+|+.+. .
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            5779999999999999989999999999999999998 6777543322222111   11124 468999999999763 1


Q ss_pred             CH-------HHHHHHH-------------HhhhccCCCHHHHH
Q psy11510        140 TP-------EDIKNVS-------------EKATKVKLNKQSKF  162 (171)
Q Consensus       140 ~~-------~~~~~~~-------------~~sa~~~~~v~~~f  162 (171)
                      +.       +++.+++             ++||++|.|+.+.+
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            22       2333332             34889999997544

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.72  E-value=2.3e-17  Score=126.69  Aligned_cols=130  Identities=15%  Similarity=0.167  Sum_probs=94.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhcccc-----------C---------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMIMT-----------F---------------------------------------   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~~~-----------~---------------------------------------   64 (171)
                      .....+|+++|.+|||||||++++.+...           .                                       
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            34678999999999999999999987100           0                                       


Q ss_pred             ---------------------ceEEEEEecCCcc-------------chhHHHHHhhhCCCEEE-EEEeCCChhhHHHHH
Q psy11510         65 ---------------------RFKLNIWDVGGQK-------------SLRSYWRNYFESTDGLI-WVVDSADKRRLEDCA  109 (171)
Q Consensus        65 ---------------------~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~ii-~v~d~~~~~s~~~~~  109 (171)
                                           ...+.+|||||..             .+..+...+++.+++++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                                 2578999999963             45567788888998877 689998765444333


Q ss_pred             HHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHH-----------HHHhhhccCCCHHHHHHHHHHH
Q psy11510        110 RELHELLQEERLAGATLLVFANKQDIEGAL--TPEDIKN-----------VSEKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       110 ~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~-----------~~~~sa~~~~~v~~~f~~l~~~  168 (171)
                      .++..+ .   ..+.|+++|+||+|+.+..  ..+.+..           ..++||++|.|++++|+.+.+.
T Consensus       183 ~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          183 KIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            334443 2   2578999999999997632  2333222           1256999999999999988753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.72  E-value=2.5e-17  Score=124.86  Aligned_cols=102  Identities=15%  Similarity=0.061  Sum_probs=73.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhh------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFE------   88 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~------   88 (171)
                      ..+.++|+++|..|+|||||++++.+                    ....+..+.+|||||+.++....+.+++      
T Consensus        33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            35789999999999999999999997                    3445678999999999877554443332      


Q ss_pred             ---CCCEEEEEEeCCChhhHHHH-HHHHHHHHhccc-cCCCeEEEEEeCCCCCC
Q psy11510         89 ---STDGLIWVVDSADKRRLEDC-ARELHELLQEER-LAGATLLVFANKQDIEG  137 (171)
Q Consensus        89 ---~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~  137 (171)
                         ++|++++|++++... +... ..|+..+..... ....|+++|+||+|+..
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~  165 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP  165 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence               789999999887644 3322 344444433211 11359999999999953

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.72  E-value=2.1e-17  Score=126.02  Aligned_cols=128  Identities=9%  Similarity=0.089  Sum_probs=75.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-----------------------------cccCceEEEEEecCCc-------cch
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-----------------------------IMTFRFKLNIWDVGGQ-------KSL   79 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-----------------------------~~~~~~~~~i~d~~g~-------~~~   79 (171)
                      ...++|+++|.+|+|||||++++..                             .++..+.+.+|||||.       +.+
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            4579999999999999999999765                             1222358999999997       234


Q ss_pred             hHHH-------HHhhhC-------------CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q psy11510         80 RSYW-------RNYFES-------------TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL  139 (171)
Q Consensus        80 ~~~~-------~~~~~~-------------~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~  139 (171)
                      ..+.       ..|+..             +|+++++++.+.......-..++..+ ..    ++|+++|+||+|+....
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHH
Confidence            4443       444443             78999999766522222223334444 22    79999999999986421


Q ss_pred             CH----HHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510        140 TP----EDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       140 ~~----~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      ..    +.+.+.+        ..|+.+++|+.++++.+.+.
T Consensus       161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            11    1222222        35899999999999888654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.72  E-value=4.5e-17  Score=129.24  Aligned_cols=123  Identities=7%  Similarity=-0.044  Sum_probs=94.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHH
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC  108 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~  108 (171)
                      +|+++|..++|||||++++..           +...+..+.+|||||+++|.......++.+|++++|+| +. ..+.+.
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g~~~qt  100 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-GLDAHT  100 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-CCCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-CCcHHH
Confidence            999999999999999999984           44456789999999999998877778899999999999 44 344555


Q ss_pred             HHHHHHHHhccccCCCeE-EEEEe-CCCCCCCCCH----HHHHHHH-----------H--hhhcc---CCCHHHHHHHHH
Q psy11510        109 ARELHELLQEERLAGATL-LVFAN-KQDIEGALTP----EDIKNVS-----------E--KATKV---KLNKQSKFQVLL  166 (171)
Q Consensus       109 ~~~~~~i~~~~~~~~~p~-ivv~n-K~Dl~~~~~~----~~~~~~~-----------~--~sa~~---~~~v~~~f~~l~  166 (171)
                      .+++..+..    .++|. ++++| |+|+ +....    +++.+++           .  .||++   +.|++++++.+.
T Consensus       101 ~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~  175 (370)
T 2elf_A          101 GECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARIN  175 (370)
T ss_dssp             HHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHH
T ss_pred             HHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHH
Confidence            555544422    36777 88999 9999 52111    3344332           3  89999   999999999887


Q ss_pred             HHH
Q psy11510        167 NEV  169 (171)
Q Consensus       167 ~~i  169 (171)
                      +.+
T Consensus       176 ~~~  178 (370)
T 2elf_A          176 EVA  178 (370)
T ss_dssp             HHH
T ss_pred             hhc
Confidence            653

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.72  E-value=4.5e-17  Score=130.62  Aligned_cols=98  Identities=20%  Similarity=0.177  Sum_probs=78.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------cccCceEEEEEecCCccc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------IMTFRFKLNIWDVGGQKS   78 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------~~~~~~~~~i~d~~g~~~   78 (171)
                      .++.++|+++|..++|||||++++..                                    +......+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            56789999999999999999999865                                    122346789999999999


Q ss_pred             hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         79 LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        79 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      |......++..+|++++|+|+++.... ...+++..+..    .++| +++++||+|+.+
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~  142 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVD  142 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccC
Confidence            988888889999999999999886533 33444444422    3678 889999999975

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.71  E-value=7.8e-19  Score=143.81  Aligned_cols=124  Identities=19%  Similarity=0.223  Sum_probs=94.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      ++..+|+++|..++|||||++++..                   +..++..+.+|||||++.|..++...+..+|++++|
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV   81 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV   81 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence            4567999999999999999999986                   222345789999999999999888888999999999


Q ss_pred             EeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCH---HHH-------------HHHHHhhhccCCC
Q psy11510         97 VDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTP---EDI-------------KNVSEKATKVKLN  157 (171)
Q Consensus        97 ~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~---~~~-------------~~~~~~sa~~~~~  157 (171)
                      +|+++   +++.+.+    ... .   ..++|+++++||+|+.+....   +++             ..+.++||++|.|
T Consensus        82 Vda~~g~~~qT~e~l----~~~-~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~g  153 (501)
T 1zo1_I           82 VAADDGVMPQTIEAI----QHA-K---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTG  153 (501)
T ss_dssp             EETTTBSCTTTHHHH----HHH-H---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTT
T ss_pred             eecccCccHHHHHHH----HHH-H---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccC
Confidence            99988   4454433    222 1   257899999999999752110   000             1234679999999


Q ss_pred             HHHHHHHHHH
Q psy11510        158 KQSKFQVLLN  167 (171)
Q Consensus       158 v~~~f~~l~~  167 (171)
                      ++++|+.+..
T Consensus       154 I~eLle~I~~  163 (501)
T 1zo1_I          154 IDELLDAILL  163 (501)
T ss_dssp             CTTHHHHTTT
T ss_pred             cchhhhhhhh
Confidence            9999998764

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.71  E-value=4.1e-17  Score=130.63  Aligned_cols=127  Identities=17%  Similarity=0.116  Sum_probs=92.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchhH
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLRS   81 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~~   81 (171)
                      +.+||+++|..++|||||++++..                                   +......+.+||+||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            578999999999999999999975                                   112346789999999999988


Q ss_pred             HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC-----HHHHHHHH-------
Q psy11510         82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEGALT-----PEDIKNVS-------  148 (171)
Q Consensus        82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~~~-----~~~~~~~~-------  148 (171)
                      ....+++.+|++++|+|+++....+. .+++..+ ..   .++| +++++||+|+.+...     .+++.+++       
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  156 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence            88888999999999999998543322 2223222 22   3678 789999999975111     12333332       


Q ss_pred             ------HhhhccCCC----------HHHHHHHHHHH
Q psy11510        149 ------EKATKVKLN----------KQSKFQVLLNE  168 (171)
Q Consensus       149 ------~~sa~~~~~----------v~~~f~~l~~~  168 (171)
                            +.||++|.|          +.++++.+.+.
T Consensus       157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~  192 (397)
T 1d2e_A          157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (397)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHh
Confidence                  347887664          78888887654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.70  E-value=2.4e-17  Score=137.72  Aligned_cols=124  Identities=20%  Similarity=0.178  Sum_probs=94.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---ccc---------------------------Cc-------eEEEEEecCCccch
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---IMT---------------------------FR-------FKLNIWDVGGQKSL   79 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---~~~---------------------------~~-------~~~~i~d~~g~~~~   79 (171)
                      +..+|+++|..++|||||++++.+   ...                           ..       ..+++|||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            567999999999999999999987   000                           01       14899999999999


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHHHhhhccCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVKL  156 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~sa~~~~  156 (171)
                      ..++..+++.+|++++|+|+++   +++++.+..    + ..   .++|+++++||+|+...........+.+++++++.
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l-~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEALNI----L-RM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----H-HH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----H-HH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            9988888899999999999999   666665432    2 21   47899999999999753322223346677888888


Q ss_pred             CHHHHHHHHHHH
Q psy11510        157 NKQSKFQVLLNE  168 (171)
Q Consensus       157 ~v~~~f~~l~~~  168 (171)
                      ++.+.|..++..
T Consensus       156 ~v~~~~~e~i~e  167 (594)
T 1g7s_A          156 QVQQKLDTKVYE  167 (594)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888777665543

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.70  E-value=1.5e-16  Score=128.70  Aligned_cols=124  Identities=16%  Similarity=0.057  Sum_probs=89.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------cc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------------------------------------IM   62 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------------------------------------~~   62 (171)
                      .++.++|+++|..++|||||++++..                                                    +.
T Consensus        21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~  100 (434)
T 1zun_B           21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS  100 (434)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence            45679999999999999999999963                                                    01


Q ss_pred             cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC--
Q psy11510         63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT--  140 (171)
Q Consensus        63 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--  140 (171)
                      .....+.+|||||+++|...+..++..+|++++|+|+++.... ...+++..+ ...  .-.|+++|+||+|+.+...  
T Consensus       101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~-~~~--~~~~iIvviNK~Dl~~~~~~~  176 (434)
T 1zun_B          101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIA-SLL--GIKHIVVAINKMDLNGFDERV  176 (434)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHH-HHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHH-HHc--CCCeEEEEEEcCcCCcccHHH
Confidence            1346789999999999988888889999999999999886432 223333322 221  2246999999999976211  


Q ss_pred             ----HHHHHHHH-------------HhhhccCCCHHHHH
Q psy11510        141 ----PEDIKNVS-------------EKATKVKLNKQSKF  162 (171)
Q Consensus       141 ----~~~~~~~~-------------~~sa~~~~~v~~~f  162 (171)
                          .+++.+++             ++||++|.|+.++|
T Consensus       177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~  215 (434)
T 1zun_B          177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKS  215 (434)
T ss_dssp             HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCC
T ss_pred             HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccc
Confidence                12222221             34899999998743

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.70  E-value=2e-17  Score=138.75  Aligned_cols=124  Identities=14%  Similarity=0.068  Sum_probs=88.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .++.++|+++|..|+|||||++++.+                                                  +...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            56789999999999999999999973                                                  2234


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---L---EDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      ...+.+|||||+++|...+..+++.+|++++|+|++++..   |   ....+.+ .++..  ....|+++|+||+|+.+.
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l-~~~~~--lgi~~iIVVvNKiDl~~~  320 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHM-LLASS--LGIHNLIIAMNKMDNVDW  320 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHH-HHHHT--TTCCEEEEEEECTTTTTT
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHH-HHHHH--cCCCeEEEEEecccccch
Confidence            4589999999999999988899999999999999987421   0   1111111 22222  123469999999999762


Q ss_pred             C--C----HHHHHHHH-------------HhhhccCCCHHHH
Q psy11510        139 L--T----PEDIKNVS-------------EKATKVKLNKQSK  161 (171)
Q Consensus       139 ~--~----~~~~~~~~-------------~~sa~~~~~v~~~  161 (171)
                      .  .    .+++..++             .+||++|.|+.++
T Consensus       321 ~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          321 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             hHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            1  1    12222222             3599999999865

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.69  E-value=7.5e-17  Score=133.25  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=78.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEecC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDVG   74 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~~   74 (171)
                      .+..+|+++|..|+|||||++++..                                         +...+..+++||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            4679999999999999999999974                                         12345789999999


Q ss_pred             CccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC
Q psy11510         75 GQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT  140 (171)
Q Consensus        75 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~  140 (171)
                      |+.+|......+++.+|++++|+|+++...-. ....+..+    ...++|+++|+||+|+.....
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~----~~~~ipiivviNK~Dl~~~~~  151 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT----RLRDTPILTFMNKLDRDIRDP  151 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH----TTTTCCEEEEEECTTSCCSCH
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH----HHcCCCEEEEEcCcCCccccH
Confidence            99999988888999999999999998864322 22222222    235799999999999987543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.67  E-value=1.7e-16  Score=129.15  Aligned_cols=122  Identities=12%  Similarity=0.075  Sum_probs=88.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .++.++|+++|..++|||||+++++.                                                  +...
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~   83 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence            45689999999999999999999952                                                  1334


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh---hHH---HHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR---RLE---DCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      ...+.+|||||+++|...+..++..+|++++|+|+++..   +|+   ...+.+... ..   .++| +++|+||+|+.+
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~  159 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVK  159 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGT
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence            578999999999999998888999999999999998753   221   222222222 21   3565 999999999974


Q ss_pred             CCCH-------HHHHHHH-------------HhhhccCCCHHHH
Q psy11510        138 ALTP-------EDIKNVS-------------EKATKVKLNKQSK  161 (171)
Q Consensus       138 ~~~~-------~~~~~~~-------------~~sa~~~~~v~~~  161 (171)
                      . +.       +++.+++             +.||++|.|+.+.
T Consensus       160 ~-~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          160 W-DESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             T-CHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             C-CHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            1 22       1232221             3488999998643

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.66  E-value=3e-17  Score=129.86  Aligned_cols=128  Identities=9%  Similarity=0.120  Sum_probs=70.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----------------------------cc--cCceEEEEEecCCc-------cc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----------------------------IM--TFRFKLNIWDVGGQ-------KS   78 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----------------------------~~--~~~~~~~i~d~~g~-------~~   78 (171)
                      ...++|+++|+.|+|||||++++.+                            +.  +....+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            4568999999999999999999754                            11  11346899999998       66


Q ss_pred             hhHHHH-------HhhhCC-------------CEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         79 LRSYWR-------NYFEST-------------DGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        79 ~~~~~~-------~~~~~~-------------~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      +..++.       .|++++             |+++|+++.+ ..++..+. .++..+     ..++|+++|+||+|+..
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~  188 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT  188 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence            776665       666543             4566655532 33454444 333333     25799999999999975


Q ss_pred             CCCH----HHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        138 ALTP----EDIKNVS--------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       138 ~~~~----~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      ....    +++.+.+        ++||+++.| ++.|..+.+.+.
T Consensus       189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~  232 (361)
T 2qag_A          189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK  232 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence            2111    2233322        568999988 888888777653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.65  E-value=4.3e-15  Score=126.29  Aligned_cols=98  Identities=18%  Similarity=0.183  Sum_probs=81.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      ..+..+|+++|..|+|||||++++..                                     +......+++|||||+.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~   88 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV   88 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence            46789999999999999999999982                                     23346789999999999


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      +|...+..+++.+|++++|+|+++..+.+....|. .+..    .++|+++|+||+|+..
T Consensus        89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWR-QAEK----YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECTTSTT
T ss_pred             chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCccc
Confidence            99999999999999999999999987776654443 3322    4799999999999865

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.65  E-value=7.4e-17  Score=131.58  Aligned_cols=127  Identities=14%  Similarity=0.138  Sum_probs=78.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .++.++|+++|..++|||||++++..                                                  +..+
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            45789999999999999999999852                                                  1223


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh---hHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCC-C
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR---RLEDCARELHELLQEERLAGAT-LLVFANKQDIEGA-L  139 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~-~  139 (171)
                      +..+.+||+||+++|...+..++..+|++++|+|+++..   +|+....+...+. .....++| +++++||+|+.+. .
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~-~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAV-LARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHH-HHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHH-HHHHcCCCEEEEEEECccCCCccc
Confidence            567899999999999888888899999999999999862   2221111111111 11124677 9999999999652 1


Q ss_pred             CHH-------HHHHHH---------------HhhhccCCCHHHHH
Q psy11510        140 TPE-------DIKNVS---------------EKATKVKLNKQSKF  162 (171)
Q Consensus       140 ~~~-------~~~~~~---------------~~sa~~~~~v~~~f  162 (171)
                      +.+       ++.+++               ++||++|.|+.++|
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            221       222221               34889999998755

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.64  E-value=5.5e-16  Score=117.91  Aligned_cols=101  Identities=13%  Similarity=0.068  Sum_probs=71.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH-------HHHh--
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY-------WRNY--   86 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~-------~~~~--   86 (171)
                      .+.++|+++|.+|+|||||++++.+                    .......+.+|||||...+...       ...+  
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~  116 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL  116 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence            4689999999999999999999987                    2334567999999998766422       1122  


Q ss_pred             hhCCCEEEEEEeCCChhhHHHH-HHHHHHHHhccc-cCCCeEEEEEeCCCCCC
Q psy11510         87 FESTDGLIWVVDSADKRRLEDC-ARELHELLQEER-LAGATLLVFANKQDIEG  137 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~p~ivv~nK~Dl~~  137 (171)
                      .+.+|++++|+|++.. ++... ..|+..+..... ....|+++|+||+|+..
T Consensus       117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence            2369999999998653 34332 345555533211 11279999999999865

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.63  E-value=9e-16  Score=134.83  Aligned_cols=129  Identities=15%  Similarity=0.072  Sum_probs=94.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccch
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      .++.++|+++|..++|||||++++..                                   +......+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            56789999999999999999999875                                   1123467899999999999


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCCCCC-----HHHHHHHH-----
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEGALT-----PEDIKNVS-----  148 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~~~~-----~~~~~~~~-----  148 (171)
                      ......++..+|++++|+|+++.... +..+++..+. .   .++| +++++||+|+.+...     .+++.+++     
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~-~---lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~  447 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGR-Q---VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF  447 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHH-H---HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHH-H---cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence            88888889999999999999885432 2333343332 1   3678 789999999975211     12333333     


Q ss_pred             --------HhhhccC--------CCHHHHHHHHHHH
Q psy11510        149 --------EKATKVK--------LNKQSKFQVLLNE  168 (171)
Q Consensus       149 --------~~sa~~~--------~~v~~~f~~l~~~  168 (171)
                              +.||++|        .|+.++++.+.+.
T Consensus       448 ~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          448 PGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             CTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             cccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence                    3488888        4688888887653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.63  E-value=6e-15  Score=124.93  Aligned_cols=97  Identities=15%  Similarity=0.181  Sum_probs=78.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      ..+..+|+++|+.|+|||||++++..                                     +....+.+++|||||+.
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~   85 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG   85 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence            35678999999999999999999982                                     23346789999999999


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      +|...+..+++.+|++++|+|+++...... ..++..+..    .++|+++|+||+|+.
T Consensus        86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 DFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             chHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence            999989999999999999999887544332 233444422    479999999999986

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.63  E-value=1.3e-15  Score=111.03  Aligned_cols=132  Identities=15%  Similarity=0.066  Sum_probs=88.8

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhccc---------cCce---------EEEEEecCCccc----------hhHHHH
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKMIM---------TFRF---------KLNIWDVGGQKS----------LRSYWR   84 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~~~---------~~~~---------~~~i~d~~g~~~----------~~~~~~   84 (171)
                      .+..+..+|+++|++|||||||++++.+..         +...         .+.+||+||...          ++....
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            335677899999999999999999998711         0000         368999999742          333333


Q ss_pred             Hhh---hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC----CHHHHHHHH---------
Q psy11510         85 NYF---ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL----TPEDIKNVS---------  148 (171)
Q Consensus        85 ~~~---~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~----~~~~~~~~~---------  148 (171)
                      .++   ..++++++++|++.+.++...  .+...+.   ..+.|+++++||+|+...-    ..+.++..+         
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~  175 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV  175 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence            444   468999999999886554321  1122222   2478999999999986521    112333332         


Q ss_pred             -HhhhccCCCHHHHHHHHHHHH
Q psy11510        149 -EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       149 -~~sa~~~~~v~~~f~~l~~~i  169 (171)
                       .+|++++.|++++++.+.+.+
T Consensus       176 ~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          176 ETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             EECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeecCCCCHHHHHHHHHHHH
Confidence             469999999999999987653

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.60  E-value=3.9e-15  Score=115.14  Aligned_cols=99  Identities=16%  Similarity=0.183  Sum_probs=62.7

Q ss_pred             eEEEEEecCCccc-------------hhHHHHHhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEe
Q psy11510         66 FKLNIWDVGGQKS-------------LRSYWRNYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFAN  131 (171)
Q Consensus        66 ~~~~i~d~~g~~~-------------~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~n  131 (171)
                      ..+.+|||||...             +......+++++|++++|+|+++.. .-.....++..+ .   ..+.|+++|+|
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-~---~~~~~~i~v~N  206 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-D---PEGKRTIGVIT  206 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-C---SSCSSEEEEEE
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-C---CCCCcEEEEEc
Confidence            3689999999753             4556778889999999999974322 111111222222 2   24789999999


Q ss_pred             CCCCCCCCC--HHHHHHH-----H------Hhhhcc---CCCHHHHHHHHHHH
Q psy11510        132 KQDIEGALT--PEDIKNV-----S------EKATKV---KLNKQSKFQVLLNE  168 (171)
Q Consensus       132 K~Dl~~~~~--~~~~~~~-----~------~~sa~~---~~~v~~~f~~l~~~  168 (171)
                      |+|+.+...  .+.+...     .      ..|+.+   +.|+.++++.+.+.
T Consensus       207 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~  259 (315)
T 1jwy_B          207 KLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILY  259 (315)
T ss_dssp             CTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHH
T ss_pred             CcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHH
Confidence            999976322  2323211     0      225566   78999998876553

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.60  E-value=5.4e-16  Score=113.02  Aligned_cols=97  Identities=18%  Similarity=0.202  Sum_probs=74.2

Q ss_pred             cCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHH---HHHHhccc-cCCCeEEEEEeCC-CCCCCCCHHHHHHH
Q psy11510         73 VGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCAREL---HELLQEER-LAGATLLVFANKQ-DIEGALTPEDIKNV  147 (171)
Q Consensus        73 ~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~---~~i~~~~~-~~~~p~ivv~nK~-Dl~~~~~~~~~~~~  147 (171)
                      .+||++++++|+.||+++|++|||+|++|...++ ..+.+   ..++.+.. ..++|++|++||. |++.+++..++.+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            4589999999999999999999999999987655 55555   45555443 4789999999995 89999999999888


Q ss_pred             H------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        148 S------------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       148 ~------------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      +            .+||.+|+|+.+-++|+++.+.
T Consensus       188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            7            5699999999999999987653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.59  E-value=1.6e-16  Score=132.83  Aligned_cols=117  Identities=18%  Similarity=0.134  Sum_probs=74.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .++.++|+++|..++|||||+++|+.                                                  +...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            56789999999999999999999952                                                  2223


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh----------hhHHHHHHHHHHHHhccccCCCe-EEEEEeCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK----------RRLEDCARELHELLQEERLAGAT-LLVFANKQ  133 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~  133 (171)
                      +..+.+|||||+++|......++..+|++++|+|++++          ++.+.+    ..+ ..   .++| +++|+||+
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~-~~---lgip~iIvviNKi  325 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLL-RA---LGISEIVVSVNKL  325 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHH-HH---SSCCCEEEEEECG
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHH-HH---cCCCeEEEEEecc
Confidence            46789999999999988777888899999999999853          333222    122 21   3565 99999999


Q ss_pred             CCCCCCC------HHHHHHHH--------------HhhhccCCCHH
Q psy11510        134 DIEGALT------PEDIKNVS--------------EKATKVKLNKQ  159 (171)
Q Consensus       134 Dl~~~~~------~~~~~~~~--------------~~sa~~~~~v~  159 (171)
                      |+.+...      .+++..++              .+||++|.|+.
T Consensus       326 Dl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          326 DLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            9975211      12333333              45999999998

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.59  E-value=7.6e-15  Score=124.83  Aligned_cols=67  Identities=15%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             EEEEEecCCccc---hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         67 KLNIWDVGGQKS---LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        67 ~~~i~d~~g~~~---~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      .+.+|||||...   ....+..+++++|++++|+|++++.+..+...|...+ ..   .+.|+++|+||+|+..
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l-~~---~~~~iiiVlNK~Dl~~  244 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI-KG---RGLTVFFLVNAWDQVR  244 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT-TT---SCCCEEEEEECGGGGG
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH-Hh---hCCCEEEEEECccccc
Confidence            588999999655   3446667889999999999999887777655443333 22   3678999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.57  E-value=1.5e-14  Score=116.25  Aligned_cols=131  Identities=18%  Similarity=0.123  Sum_probs=92.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccC-ceEEEEEecCCccch----hHHH---HHhhhCCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTF-RFKLNIWDVGGQKSL----RSYW---RNYFESTD   91 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~-~~~~~i~d~~g~~~~----~~~~---~~~~~~~~   91 (171)
                      -.|+++|++|||||||++.+.+                   +... ...+.+||++|....    ..+.   ......++
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            4589999999999999999987                   1112 256889999997321    1121   22345799


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         92 GLIWVVDSADKRRLEDCARELHELLQEE-RLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      .+++|+|++ ...++.+..+..++.... ...+.|.++|+||+|+......+++.+.+        ..||+++.|+++++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~  316 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALK  316 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHH
Confidence            999999998 556777766666654321 12368999999999997642222333333        35999999999999


Q ss_pred             HHHHHHHh
Q psy11510        163 QVLLNEVS  170 (171)
Q Consensus       163 ~~l~~~i~  170 (171)
                      +.+.+.+.
T Consensus       317 ~~i~~~l~  324 (416)
T 1udx_A          317 EALHALVR  324 (416)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.56  E-value=3e-14  Score=121.13  Aligned_cols=99  Identities=18%  Similarity=0.207  Sum_probs=81.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      ..+..+|+++|..|+|||||++++..                                     +...+..+++|||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            45789999999999999999999983                                     12235679999999999


Q ss_pred             chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         78 SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        78 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      +|...+..+++.+|++++|+|+++..+......| ..+..    .++|+++|+||+|+...
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~-~~~~~----~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW-RQATT----YGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSTTC
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH-HHHHH----cCCCEEEEEECCCcccc
Confidence            9999899999999999999999987776655443 33322    47899999999999874

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.56  E-value=2.3e-15  Score=124.97  Aligned_cols=99  Identities=17%  Similarity=0.149  Sum_probs=76.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhcccc--------------------Cc-----------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMIMT--------------------FR-----------------------------   65 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~~~--------------------~~-----------------------------   65 (171)
                      .....+|+++|..|+|||||++++.+...                    ..                             
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            34678999999999999999999987110                    00                             


Q ss_pred             ------------eEEEEEecCCccc-----------hhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccC
Q psy11510         66 ------------FKLNIWDVGGQKS-----------LRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLA  122 (171)
Q Consensus        66 ------------~~~~i~d~~g~~~-----------~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~  122 (171)
                                  ..+.+|||||...           +...+..++..+|++++|+|+++....+....++..+..    .
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~  217 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----H  217 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----C
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----c
Confidence                        2578999999865           556777888999999999999875444555555555522    3


Q ss_pred             CCeEEEEEeCCCCCC
Q psy11510        123 GATLLVFANKQDIEG  137 (171)
Q Consensus       123 ~~p~ivv~nK~Dl~~  137 (171)
                      +.|+++|+||+|+..
T Consensus       218 ~~pvilVlNK~Dl~~  232 (550)
T 2qpt_A          218 EDKIRVVLNKADMVE  232 (550)
T ss_dssp             GGGEEEEEECGGGSC
T ss_pred             CCCEEEEEECCCccC
Confidence            689999999999965

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.54  E-value=1e-14  Score=126.24  Aligned_cols=98  Identities=21%  Similarity=0.209  Sum_probs=81.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhcc-----------------------------------cc----------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMI-----------------------------------MT----------------   63 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~-----------------------------------~~----------------   63 (171)
                      ..+..||+++|..++|||||++++...                                   ..                
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            456789999999999999999999750                                   01                


Q ss_pred             CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      ....+++|||||+.+|...+..+++.+|++++|+|+++..+++....|. ....    .++|+++|+||+|+..
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~-~~~~----~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLR-QALG----ERIKPVVVINKVDRAL  164 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCEEEEEEECHHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCeEEEEECCCcch
Confidence            1567899999999999999999999999999999999988887755443 3322    4789999999999863

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.54  E-value=6e-14  Score=119.44  Aligned_cols=99  Identities=15%  Similarity=0.138  Sum_probs=78.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCc-------eEEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFR-------FKLNI   70 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~-------~~~~i   70 (171)
                      ..+..+|+++|..|+|||||++++..                                     +....       ..+++
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            45678999999999999999999952                                     11122       78899


Q ss_pred             EecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         71 WDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        71 ~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      |||||+.+|...+..+++.+|++++|+|+++....+....| ....    ..++|+++|+||+|+...
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~----~~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN----KYKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH----HcCCCEEEEEeCCCcccc
Confidence            99999999999999999999999999999987655443332 3332    247899999999999764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.53  E-value=6.1e-15  Score=112.28  Aligned_cols=97  Identities=19%  Similarity=0.215  Sum_probs=79.1

Q ss_pred             cCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHH---HHHhccc-cCCCeEEEEEeC-CCCCCCCCHHHHHHH
Q psy11510         73 VGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELH---ELLQEER-LAGATLLVFANK-QDIEGALTPEDIKNV  147 (171)
Q Consensus        73 ~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~---~i~~~~~-~~~~p~ivv~nK-~Dl~~~~~~~~~~~~  147 (171)
                      .+||+..+++|..|++++|++|||+|++|.++++ ..+.+.   .++++.. ..++|++|++|| +|++++++..++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4789999999999999999999999999988765 444333   5555433 478999999996 699999999999888


Q ss_pred             H------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        148 S------------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       148 ~------------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      +            .+||.+|+|+.+-++|+++.+.
T Consensus       273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            7            5699999999999999998763

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.53  E-value=3.3e-13  Score=111.92  Aligned_cols=98  Identities=15%  Similarity=0.206  Sum_probs=81.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------------cccCceEEEEEec
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------------------------------IMTFRFKLNIWDV   73 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------------------------------~~~~~~~~~i~d~   73 (171)
                      ..+.-+|.++|..++|||||..+++.                                         +.+.+..++++||
T Consensus        28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT  107 (548)
T 3vqt_A           28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT  107 (548)
T ss_dssp             HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred             ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence            34678999999999999999999974                                         5667889999999


Q ss_pred             CCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         74 GGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        74 ~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      ||+.+|..-....++-+|+.++|+|+...-.-+.-.-| ....    ..++|.++++||+|.+.
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~----~~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCR----MRATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHH----HTTCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHH----HhCCceEEEEecccchh
Confidence            99999999888889999999999999986554443333 3332    25899999999999865

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.52  E-value=2.1e-14  Score=113.13  Aligned_cols=128  Identities=16%  Similarity=0.191  Sum_probs=85.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhccc-------------c---------------------------------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMIM-------------T---------------------------------------   63 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~~-------------~---------------------------------------   63 (171)
                      ....+|+++|.+|||||||++++.+..             .                                       
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            356799999999999999999998710             0                                       


Q ss_pred             -------------------CceEEEEEecCCcc-------------chhHHHHHhhhCCCEEEE-EEeCCChhhHHHHHH
Q psy11510         64 -------------------FRFKLNIWDVGGQK-------------SLRSYWRNYFESTDGLIW-VVDSADKRRLEDCAR  110 (171)
Q Consensus        64 -------------------~~~~~~i~d~~g~~-------------~~~~~~~~~~~~~~~ii~-v~d~~~~~s~~~~~~  110 (171)
                                         ....+.+|||||..             .+..+...|+.+++.+++ |+|++....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                               02468999999953             455677788877776655 556554222112212


Q ss_pred             HHHHHHhccccCCCeEEEEEeCCCCCCCCC--HHHHHH-----------HHHhhhccCCCHHHHHHHHHH
Q psy11510        111 ELHELLQEERLAGATLLVFANKQDIEGALT--PEDIKN-----------VSEKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       111 ~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~--~~~~~~-----------~~~~sa~~~~~v~~~f~~l~~  167 (171)
                      ++..+    ...+.|+++|+||+|+.+.-.  .+.+..           ...+||+++.|++++++.+.+
T Consensus       189 i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHh----CcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            23333    235799999999999975322  221111           125699999999999998875

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.49  E-value=7.5e-14  Score=110.22  Aligned_cols=68  Identities=18%  Similarity=0.318  Sum_probs=48.6

Q ss_pred             EEEEEecCCccch-------------hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510         67 KLNIWDVGGQKSL-------------RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus        67 ~~~i~d~~g~~~~-------------~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                      .+.+|||||..++             ..+...|++++|++++|+|.++.....  ..|+ .++......+.|+++|+||+
T Consensus       137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~-~l~~~~~~~~~~~i~V~nK~  213 (360)
T 3t34_A          137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAI-KISREVDPSGDRTFGVLTKI  213 (360)
T ss_dssp             SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHH-HHHHHSCTTCTTEEEEEECG
T ss_pred             CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHH-HHHHHhcccCCCEEEEEeCC
Confidence            4789999998776             667888999999999999876543221  1122 22222333578999999999


Q ss_pred             CCCC
Q psy11510        134 DIEG  137 (171)
Q Consensus       134 Dl~~  137 (171)
                      |+.+
T Consensus       214 Dl~~  217 (360)
T 3t34_A          214 DLMD  217 (360)
T ss_dssp             GGCC
T ss_pred             ccCC
Confidence            9865

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.49  E-value=4.7e-14  Score=111.29  Aligned_cols=123  Identities=11%  Similarity=0.063  Sum_probs=86.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      ..+..+|+++|.+|+|||||++++..                                                      
T Consensus        76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~  155 (355)
T 3p32_A           76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG  155 (355)
T ss_dssp             CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence            34678999999999999999999853                                                      


Q ss_pred             -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                                 ....+..+.+|||||...   ........+|++++|+|....+.++.+.         ....+.|+++|
T Consensus       156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV  223 (355)
T 3p32_A          156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV  223 (355)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred             hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence                       012357789999999533   2234458899999999987765443221         11124699999


Q ss_pred             EeCCCCCCCCCH----HHHHHH---------------HHhhhccCCCHHHHHHHHHHHH
Q psy11510        130 ANKQDIEGALTP----EDIKNV---------------SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       130 ~nK~Dl~~~~~~----~~~~~~---------------~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +||+|+.+....    +++...               +.+||++|.|++++++.+.+.+
T Consensus       224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~  282 (355)
T 3p32_A          224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHR  282 (355)
T ss_dssp             EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred             EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence            999999652111    222222               1369999999999999987654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.49  E-value=2.8e-14  Score=110.24  Aligned_cols=128  Identities=8%  Similarity=0.127  Sum_probs=71.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhcc------------------------------ccCceEEEEEecCCc-------cc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMI------------------------------MTFRFKLNIWDVGGQ-------KS   78 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~------------------------------~~~~~~~~i~d~~g~-------~~   78 (171)
                      .-.++|+++|+.|||||||++++.+.                              ......+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            34689999999999999999997540                              111346799999998       55


Q ss_pred             hhHHHH-------HhhhC-------------CCEEEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         79 LRSYWR-------NYFES-------------TDGLIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        79 ~~~~~~-------~~~~~-------------~~~ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      +..+..       .+++.             +++++++.+.+. .+++... +.+..+     ..+.|+++|+||+|+..
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-----~~~~~iilV~~K~Dl~~  169 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT  169 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-----TTTSCEEEEECCGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-----HhcCCEEEEEEeCCCCC
Confidence            655554       44432             355566555332 1233322 223333     14679999999999965


Q ss_pred             C--C--CHHHHHHHH--------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        138 A--L--TPEDIKNVS--------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       138 ~--~--~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      .  .  ..+++.+.+        ++||++| |++++|..+++.+.
T Consensus       170 ~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          170 LKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence            2  1  123344443        5699999 99999999988764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.47  E-value=1.4e-14  Score=111.93  Aligned_cols=96  Identities=13%  Similarity=0.030  Sum_probs=77.5

Q ss_pred             EEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH
Q psy11510         67 KLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK  145 (171)
Q Consensus        67 ~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~  145 (171)
                      .+.+||+  +++++.+++.+++++|++++|||++++. +++.+..|+..+..    .++|+++|+||+|+.+....+++.
T Consensus        64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v~~~~  137 (301)
T 1u0l_A           64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVR  137 (301)
T ss_dssp             SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHH
T ss_pred             eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhHHHHH
Confidence            6789999  8999999999999999999999999987 78888899887633    479999999999997532212222


Q ss_pred             H---H-------HHhhhccCCCHHHHHHHHHHH
Q psy11510        146 N---V-------SEKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       146 ~---~-------~~~sa~~~~~v~~~f~~l~~~  168 (171)
                      +   .       .++||++|.|++++|..+...
T Consensus       138 ~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge  170 (301)
T 1u0l_A          138 ELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK  170 (301)
T ss_dssp             HHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             HHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence            2   2       257999999999999887543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.47  E-value=2.1e-14  Score=114.80  Aligned_cols=64  Identities=19%  Similarity=0.277  Sum_probs=44.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc------------------c-c----------------------c--CceEEEEEecCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM------------------I-M----------------------T--FRFKLNIWDVGG   75 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~------------------~-~----------------------~--~~~~~~i~d~~g   75 (171)
                      ++|+++|.+|||||||++++.+                  . .                      .  ..+.+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            5899999999999999999987                  0 0                      0  025789999999


Q ss_pred             ccc----hhHHHHH---hhhCCCEEEEEEeCCCh
Q psy11510         76 QKS----LRSYWRN---YFESTDGLIWVVDSADK  102 (171)
Q Consensus        76 ~~~----~~~~~~~---~~~~~~~ii~v~d~~~~  102 (171)
                      ...    .+.+...   +++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            754    2223333   36889999999999875

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.46  E-value=5.9e-14  Score=103.07  Aligned_cols=122  Identities=16%  Similarity=0.133  Sum_probs=81.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhcc---------------------------------------------------ccC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMI---------------------------------------------------MTF   64 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~---------------------------------------------------~~~   64 (171)
                      .+..+|+++|..|||||||++++..-                                                   ...
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFS  107 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence            35679999999999999999999750                                                   001


Q ss_pred             ceEEEEEecCCccchhHHHHHhh-hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC--CCH
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYF-ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA--LTP  141 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~-~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~--~~~  141 (171)
                      ...+.+|||+|+..    .+.++ ...+.+++|+|++.....  ...+ ...      .+.|.++|+||+|+.+.  ...
T Consensus       108 ~~d~iiidt~G~~~----~~~~~~~~~~~~i~vvd~~~~~~~--~~~~-~~~------~~~~~iiv~NK~Dl~~~~~~~~  174 (221)
T 2wsm_A          108 DCDLLLIENVGNLI----CPVDFDLGENYRVVMVSVTEGDDV--VEKH-PEI------FRVADLIVINKVALAEAVGADV  174 (221)
T ss_dssp             TCSEEEEEEEEBSS----GGGGCCCSCSEEEEEEEGGGCTTH--HHHC-HHH------HHTCSEEEEECGGGHHHHTCCH
T ss_pred             CCCEEEEeCCCCCC----CCchhccccCcEEEEEeCCCcchh--hhhh-hhh------hhcCCEEEEecccCCcchhhHH
Confidence            23456777776411    11122 257888999998765321  1111 111      24789999999999642  455


Q ss_pred             HHHHHHH----------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        142 EDIKNVS----------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       142 ~~~~~~~----------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                      +++.+.+          ++||++|.|++++|+.+.+.+.
T Consensus       175 ~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          175 EKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             HHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence            5554443          4599999999999999987653

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.46  E-value=2.7e-13  Score=102.03  Aligned_cols=134  Identities=14%  Similarity=0.064  Sum_probs=85.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHh-----c-----cc--c---------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKK-----M-----IM--T---------------------------------------   63 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~-----~-----~~--~---------------------------------------   63 (171)
                      ..+...+++.|.+||||||++..+.     +     ++  .                                       
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDR   90 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHH
Confidence            5567889999999999999999997     3     11  0                                       


Q ss_pred             ----------------CceEEEEEecCCccchhHHHH------HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhcccc
Q psy11510         64 ----------------FRFKLNIWDVGGQKSLRSYWR------NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERL  121 (171)
Q Consensus        64 ----------------~~~~~~i~d~~g~~~~~~~~~------~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~  121 (171)
                                      ..+.+.+|||||+........      ..+.+ +++++++|+....+.................
T Consensus        91 ~~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~  169 (262)
T 1yrb_A           91 LMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR  169 (262)
T ss_dssp             HHTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc
Confidence                            023789999999876544321      23456 8999999875432222221111111111112


Q ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHH--------------------------------------HHHhhhccCCCHHHHHH
Q psy11510        122 AGATLLVFANKQDIEGALTPEDIKN--------------------------------------VSEKATKVKLNKQSKFQ  163 (171)
Q Consensus       122 ~~~p~ivv~nK~Dl~~~~~~~~~~~--------------------------------------~~~~sa~~~~~v~~~f~  163 (171)
                      .+.|+++|+||+|+......+++.+                                      ..+.||+++.|++++++
T Consensus       170 ~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~  249 (262)
T 1yrb_A          170 LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET  249 (262)
T ss_dssp             HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred             cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence            3689999999999865321111111                                      11458999999999999


Q ss_pred             HHHHHH
Q psy11510        164 VLLNEV  169 (171)
Q Consensus       164 ~l~~~i  169 (171)
                      .+.+.+
T Consensus       250 ~i~~~~  255 (262)
T 1yrb_A          250 LAYEHY  255 (262)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            997654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.43  E-value=1.2e-13  Score=111.04  Aligned_cols=127  Identities=9%  Similarity=0.091  Sum_probs=60.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhcc---------------------------c--cCceEEEEEecCCccchh------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMI---------------------------M--TFRFKLNIWDVGGQKSLR------   80 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~---------------------------~--~~~~~~~i~d~~g~~~~~------   80 (171)
                      .-.++|+++|++|||||||++.+.+.                           .  .....+.+||++|...+.      
T Consensus        29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            34578999999999999999999871                           0  111357899999976541      


Q ss_pred             -HHH------------------HHhhhCCCE--EEEEEeCCChhhHHHHH-HHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         81 -SYW------------------RNYFESTDG--LIWVVDSADKRRLEDCA-RELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        81 -~~~------------------~~~~~~~~~--ii~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                       .+.                  ..++.++++  ++++.+.+. .++.... .|+..+.     .++|+++|+||+|+...
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~  182 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTP  182 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccH
Confidence             111                  112334444  444443321 2343333 4555552     37999999999998642


Q ss_pred             --CCH--HHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510        139 --LTP--EDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       139 --~~~--~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                        +..  +++.+.+        ++|++++.++.++|..+.+.
T Consensus       183 ~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          183 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence              111  2222222        55889999999988877654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=103.21  Aligned_cols=121  Identities=11%  Similarity=0.059  Sum_probs=78.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhcc------------------------------------------------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMI------------------------------------------------------   61 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~------------------------------------------------------   61 (171)
                      .....|+++|.+|||||||++++.+.                                                      
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            34789999999999999999999840                                                      


Q ss_pred             -----------ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510         62 -----------MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFA  130 (171)
Q Consensus        62 -----------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~  130 (171)
                                 ...+..+.++||+|....   .......+|.+++|+|++.+...+.+..   .+      -+.|.++|+
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVl  219 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAV  219 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEE
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEE
Confidence                       012345689999995321   2344678999999999987643322211   22      245889999


Q ss_pred             eCCCCCCCCC----HHHHHH---------------HHHhhhccCCCHHHHHHHHHHH
Q psy11510        131 NKQDIEGALT----PEDIKN---------------VSEKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       131 nK~Dl~~~~~----~~~~~~---------------~~~~sa~~~~~v~~~f~~l~~~  168 (171)
                      ||+|+.+...    ..++..               .+.+||++|.|++++++.+.+.
T Consensus       220 NK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~  276 (349)
T 2www_A          220 TKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDF  276 (349)
T ss_dssp             CCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             eeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHH
Confidence            9999964211    111211               1246999999999999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.40  E-value=5.6e-13  Score=104.59  Aligned_cols=123  Identities=12%  Similarity=0.111  Sum_probs=82.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------c----------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------I----------------------------------   61 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------~----------------------------------   61 (171)
                      ..+...|+++|.+|+||||+++.+..                   .                                  
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g  132 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  132 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence            35678899999999999999999953                   0                                  


Q ss_pred             ------------ccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         62 ------------MTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        62 ------------~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                                  ...+..+.++||||......   .....+|++++|+|++....++.+..   ..      .+.|.++|
T Consensus       133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv  200 (341)
T 2p67_A          133 ASQRARELMLLCEAAGYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIV  200 (341)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEE
T ss_pred             hHHHHHHHHHHhhccCCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEE
Confidence                        02246789999999654433   24688999999999876543221111   11      14688999


Q ss_pred             EeCCCCCCCCCHH----HHHHH---------------HHhhhccCCCHHHHHHHHHHHH
Q psy11510        130 ANKQDIEGALTPE----DIKNV---------------SEKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       130 ~nK~Dl~~~~~~~----~~~~~---------------~~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +||+|+.+.....    ++.+.               +..||++|.|++++++.+.+.+
T Consensus       201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~  259 (341)
T 2p67_A          201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK  259 (341)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHH
Confidence            9999997631111    22221               2468999999999999987653

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.39  E-value=9.8e-13  Score=110.93  Aligned_cols=94  Identities=21%  Similarity=0.266  Sum_probs=76.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhH
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRS   81 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~   81 (171)
                      .+|.++|..++|||||..+++.                                     +..++..+++.||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            5789999999999999999975                                     566778899999999999999


Q ss_pred             HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      .....++-+|+.++|+|+...-.-+.- ..++....    .++|.++++||.|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~----~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRK----MGIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHH----HTCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHH----cCCCeEEEEecccccc
Confidence            888889999999999999885443332 22333322    3789999999999865

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.29  E-value=4e-11  Score=94.61  Aligned_cols=63  Identities=14%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccC-----------------ceEEEEEecCCccchhH-
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTF-----------------RFKLNIWDVGGQKSLRS-   81 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~-----------------~~~~~i~d~~g~~~~~~-   81 (171)
                      ++|+++|.+|||||||++++.+                   +..+                 +..+.+||+||+.++.+ 
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~   82 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK   82 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence            6899999999999999999987                   0111                 14699999999877542 


Q ss_pred             ---H---HHHhhhCCCEEEEEEeCCC
Q psy11510         82 ---Y---WRNYFESTDGLIWVVDSAD  101 (171)
Q Consensus        82 ---~---~~~~~~~~~~ii~v~d~~~  101 (171)
                         +   ...+++++|++++|+|+++
T Consensus        83 ~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           83 GEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cchHHHHHHHHHHhcCeEEEEEecCC
Confidence               2   2345789999999999986

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.27  E-value=5.7e-11  Score=101.33  Aligned_cols=98  Identities=15%  Similarity=0.205  Sum_probs=79.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------c-------ccCceEEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------------I-------MTFRFKLNIW   71 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~-------~~~~~~~~i~   71 (171)
                      .+.-+|.++|..++|||||..+++.                                     +       ...+..++++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            4667999999999999999999986                                     1       1236789999


Q ss_pred             ecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCC
Q psy11510         72 DVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGA  138 (171)
Q Consensus        72 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~  138 (171)
                      ||||+-+|..--...++-+|+.++|+|+...-.-+.-.- ++...+    .++|.++++||.|....
T Consensus        91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v-~~~a~~----~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETV-WRQANK----YGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----HTCCEEEEEECSSSTTC
T ss_pred             eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHH-HHHHHH----cCCCeEEEEccccccCc
Confidence            999999999988888999999999999988654443322 333333    47999999999999774

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.26  E-value=2.1e-11  Score=96.69  Aligned_cols=97  Identities=18%  Similarity=0.126  Sum_probs=70.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhH----H---HHHhhhCCC
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRS----Y---WRNYFESTD   91 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~----~---~~~~~~~~~   91 (171)
                      ..+|.++|.+|||||||++.+.+                   +...+.++.+.|+||--....    .   .-...+.||
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad  151 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN  151 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence            46899999999999999999998                   455678899999999532211    1   123457899


Q ss_pred             EEEEEEeCCChhh-HHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         92 GLIWVVDSADKRR-LEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        92 ~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      ++++|+|++++.. .+.+...+...  .......|.+++.||.|..
T Consensus       152 ~il~vvD~~~p~~~~~~i~~EL~~~--~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          152 LLFIILDVNKPLHHKQIIEKELEGV--GIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             EEEEEEETTSHHHHHHHHHHHHHHT--TEEETCCCCCEEEEECSSS
T ss_pred             ccccccccCccHHHHHHHHHHHHHh--hHhhccCChhhhhhHhhhh
Confidence            9999999998743 23333333333  2233567888999999974

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.25  E-value=1.5e-12  Score=95.74  Aligned_cols=46  Identities=17%  Similarity=0.153  Sum_probs=35.7

Q ss_pred             CeEEEEEeCCCCCCC--CCHHHHHHHH----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        124 ATLLVFANKQDIEGA--LTPEDIKNVS----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       124 ~p~ivv~nK~Dl~~~--~~~~~~~~~~----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      .|.++|+||+|+.+.  ...+++...+          ++||++|.|++++|+.+.+.+
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~  222 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV  222 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence            566999999998652  4555554443          469999999999999998765

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.23  E-value=5.4e-11  Score=94.15  Aligned_cols=63  Identities=10%  Similarity=0.099  Sum_probs=49.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhccc----------------------------------------cCceEEEEEecCCccc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKMIM----------------------------------------TFRFKLNIWDVGGQKS   78 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~~~----------------------------------------~~~~~~~i~d~~g~~~   78 (171)
                      ++|+++|.+|||||||++++.+..                                        .....+.+||+||...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            579999999999999999998600                                        0134699999999866


Q ss_pred             hh-------HHHHHhhhCCCEEEEEEeCCC
Q psy11510         79 LR-------SYWRNYFESTDGLIWVVDSAD  101 (171)
Q Consensus        79 ~~-------~~~~~~~~~~~~ii~v~d~~~  101 (171)
                      +.       .....+++.+|++++|+|+++
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            42       223345789999999999975

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.20  E-value=5.8e-11  Score=101.39  Aligned_cols=128  Identities=14%  Similarity=0.159  Sum_probs=86.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhcccc----------------------------------------------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMIMT----------------------------------------------------   63 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~~~----------------------------------------------------   63 (171)
                      ....+|+++|..++||||+++.+.+...                                                    
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            4567999999999999999999987000                                                    


Q ss_pred             -------------------CceEEEEEecCCccc-------------hhHHHHHhh-hCCCEEEEEEeCCChhhHHHHHH
Q psy11510         64 -------------------FRFKLNIWDVGGQKS-------------LRSYWRNYF-ESTDGLIWVVDSADKRRLEDCAR  110 (171)
Q Consensus        64 -------------------~~~~~~i~d~~g~~~-------------~~~~~~~~~-~~~~~ii~v~d~~~~~s~~~~~~  110 (171)
                                         ....+.++||||-..             ...+...|+ ..+|++++|+|++....-.....
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                               011367899999433             223444555 47899999999987533322222


Q ss_pred             HHHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHH------------HHHhhhccCCCHHHHHHHHHH
Q psy11510        111 ELHELLQEERLAGATLLVFANKQDIEGALT-PEDIKN------------VSEKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       111 ~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~------------~~~~sa~~~~~v~~~f~~l~~  167 (171)
                      .+..+    ...+.|+++|+||+|+.+.-. ...+..            ....||++|.|++++++.+.+
T Consensus       209 ll~~L----~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          209 IAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             HHHHH----CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             HHHHH----HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence            23333    224789999999999976321 112211            113599999999999998876

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.09  E-value=4.5e-10  Score=87.96  Aligned_cols=122  Identities=9%  Similarity=0.034  Sum_probs=78.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------c---c----------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------I---M----------------------------------   62 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------~---~----------------------------------   62 (171)
                      ..+...+.++|++|||||||++.+.+               .   .                                  
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G  131 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  131 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence            34567899999999999999999974               0   0                                  


Q ss_pred             -------------cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         63 -------------TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        63 -------------~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                                   ..+..+.++||+|...-.   ......+|.+++|+|....+..+.+...   +      .+.|.+++
T Consensus       132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i------~~~~~ivv  199 (337)
T 2qm8_A          132 VAAKTRETMLLCEAAGFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---I------FELADMIA  199 (337)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---H------HHHCSEEE
T ss_pred             hHHHHHHHHHHHhcCCCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---H------hccccEEE
Confidence                         024568899999965322   2335789999999998654322211111   1      12356777


Q ss_pred             EeCCCCCCCCC-----HHHHHHH---------------HHhhhccCCCHHHHHHHHHHH
Q psy11510        130 ANKQDIEGALT-----PEDIKNV---------------SEKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       130 ~nK~Dl~~~~~-----~~~~~~~---------------~~~sa~~~~~v~~~f~~l~~~  168 (171)
                      .||+|+.....     .+++...               +.+||+++.|++++++.+.+.
T Consensus       200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~  258 (337)
T 2qm8_A          200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDH  258 (337)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            89999743211     1122211               135899999999999988654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.07  E-value=5.2e-11  Score=91.93  Aligned_cols=102  Identities=12%  Similarity=-0.093  Sum_probs=76.7

Q ss_pred             ccCceEEEEEe-cCC-----ccchhHHHHHhhhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510         62 MTFRFKLNIWD-VGG-----QKSLRSYWRNYFESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQD  134 (171)
Q Consensus        62 ~~~~~~~~i~d-~~g-----~~~~~~~~~~~~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  134 (171)
                      -++.+.+..+| +.|     ++++..+.+.++.++|++++|+|++++. +++.+.+|+..+..    .++|+++|+||+|
T Consensus        46 vGD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~D  121 (302)
T 2yv5_A           46 AGDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKID  121 (302)
T ss_dssp             BTCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGG
T ss_pred             CceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEccc
Confidence            34556667776 333     6777777788999999999999999886 88888888886633    5899999999999


Q ss_pred             CCCCC--C-HHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510        135 IEGAL--T-PEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       135 l~~~~--~-~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      +.+..  . .++..+.+        ++||++|.|++++|+.+..
T Consensus       122 L~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          122 LLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             GCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred             CCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence            96531  1 22333332        4699999999999987653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.03  E-value=3.2e-10  Score=90.32  Aligned_cols=70  Identities=11%  Similarity=0.117  Sum_probs=48.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhcc-------------------ccC-----------------ceEEEEEecCCccc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMI-------------------MTF-----------------RFKLNIWDVGGQKS   78 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~-------------------~~~-----------------~~~~~i~d~~g~~~   78 (171)
                      .....+|.++|.+|||||||++++.+.                   ..+                 ...+.+||+||...
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            345689999999999999999999871                   000                 23489999999876


Q ss_pred             hhH-------HHHHhhhCCCEEEEEEeCCChhh
Q psy11510         79 LRS-------YWRNYFESTDGLIWVVDSADKRR  104 (171)
Q Consensus        79 ~~~-------~~~~~~~~~~~ii~v~d~~~~~s  104 (171)
                      ..+       .+..+++++|++++|+|+++..+
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            554       45677899999999999876433

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.82  E-value=2.7e-08  Score=81.63  Aligned_cols=124  Identities=13%  Similarity=0.125  Sum_probs=78.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------c-----------------------c-----------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------I-----------------------M-----------------   62 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------~-----------------------~-----------------   62 (171)
                      .+...|+++|.+||||||++.++..             .                       .                 
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            4567899999999999999999983             0                       0                 


Q ss_pred             --cCceEEEEEecCCccchh-HHHHH---h--hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeE-EEEEeCC
Q psy11510         63 --TFRFKLNIWDVGGQKSLR-SYWRN---Y--FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATL-LVFANKQ  133 (171)
Q Consensus        63 --~~~~~~~i~d~~g~~~~~-~~~~~---~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ivv~nK~  133 (171)
                        ..+..+.++||||..... .++..   .  ...+|.+++|+|+.........   ...+ ..    ..|+ .+|.||.
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~-~~----~~~i~gvVlNK~  250 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAF-KD----KVDVASVIVTKL  250 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHH-HH----HHCCCCEEEECT
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHH-Hh----hcCceEEEEeCC
Confidence              034578999999975321 12211   1  2279999999999875432111   2222 11    1564 7889999


Q ss_pred             CCCCCCCH-HHHHH-----------------------HHHhhhccCCC-HHHHHHHHHH
Q psy11510        134 DIEGALTP-EDIKN-----------------------VSEKATKVKLN-KQSKFQVLLN  167 (171)
Q Consensus       134 Dl~~~~~~-~~~~~-----------------------~~~~sa~~~~~-v~~~f~~l~~  167 (171)
                      |....... -++..                       ....|+..|.| +.++++.+.+
T Consensus       251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e  309 (504)
T 2j37_W          251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE  309 (504)
T ss_dssp             TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred             ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence            98753221 11111                       12457888888 8888887754

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.58  E-value=2e-07  Score=74.90  Aligned_cols=26  Identities=4%  Similarity=-0.059  Sum_probs=22.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ....++++++|+.|+|||||++.+.+
T Consensus        39 ~Gei~~vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           39 QGFCFNILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             -CCEEEEEEECSTTSSSHHHHHHHHT
T ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhC
Confidence            34456799999999999999999987

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.58  E-value=9.2e-08  Score=75.65  Aligned_cols=109  Identities=12%  Similarity=0.046  Sum_probs=63.5

Q ss_pred             cHHHHHHHHhccccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         50 GETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        50 GKttli~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                      ||+.+.+|...+.+-+. +.-.+ ..+++|+.+.+.+++.++++++|+|++++.     ..|...+.+.  ..++|+++|
T Consensus        32 ~~~~~C~Rc~~l~hy~~-~~~v~-~~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV  102 (368)
T 3h2y_A           32 KEQVICQRCFRLKHYNE-IQDVS-LTDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLV  102 (368)
T ss_dssp             --------------------------CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEE
T ss_pred             CCCcEEhhhhhhhccCc-cccCC-CCHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEE
Confidence            45777777766322111 11112 356889999999999999999999999853     2333333221  247899999


Q ss_pred             EeCCCCCC-CCCHHHHHHHH---------------HhhhccCCCHHHHHHHHHH
Q psy11510        130 ANKQDIEG-ALTPEDIKNVS---------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       130 ~nK~Dl~~-~~~~~~~~~~~---------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      +||+|+.+ ....+++.++.               .+||++|.|++++++.+.+
T Consensus       103 ~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~  156 (368)
T 3h2y_A          103 GNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEY  156 (368)
T ss_dssp             EECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence            99999965 33444444432               3499999999999998865

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.56  E-value=3.4e-07  Score=69.43  Aligned_cols=23  Identities=4%  Similarity=0.008  Sum_probs=21.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++++++|+.|+|||||++.+.+
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999998

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.54  E-value=3e-07  Score=73.28  Aligned_cols=67  Identities=16%  Similarity=0.219  Sum_probs=50.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccC-----------------ceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTF-----------------RFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~-----------------~~~~~i~d~~g~~   77 (171)
                      ..+..++.++|++|||||||++.+.+                    +...                 +..+.+||++|..
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~   96 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   96 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence            45678999999999999999999987                    0001                 1357899999943


Q ss_pred             c-------hhHHHHHhhhCCCEEEEEEeCCC
Q psy11510         78 S-------LRSYWRNYFESTDGLIWVVDSAD  101 (171)
Q Consensus        78 ~-------~~~~~~~~~~~~~~ii~v~d~~~  101 (171)
                      .       +...+...++.+|++++|+|+.+
T Consensus        97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2       33345566789999999999864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.45  E-value=2.1e-08  Score=79.37  Aligned_cols=106  Identities=8%  Similarity=0.060  Sum_probs=64.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-------------ccc---------CceEEEEEecCCccchhH--------HHHHhh
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-------------IMT---------FRFKLNIWDVGGQKSLRS--------YWRNYF   87 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-------------~~~---------~~~~~~i~d~~g~~~~~~--------~~~~~~   87 (171)
                      ..+|+++|.+|+|||||++.+.+             ..+         -.-.+.++||||-.....        ....++
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~  241 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIIT  241 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence            46899999999999999999986             000         011257999999532221        122222


Q ss_pred             --hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510         88 --ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS  148 (171)
Q Consensus        88 --~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  148 (171)
                        +..++++++++......+..+..     +......+.|++++.||.|.......+...+.+
T Consensus       242 ~~~~i~~~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~  299 (369)
T 3ec1_A          242 PKREIHPRVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLY  299 (369)
T ss_dssp             CSSCCCCEEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHH
T ss_pred             cccccCceEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHH
Confidence              57899999999743211111100     122223578999999999986533333333333

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.44  E-value=2.3e-07  Score=73.39  Aligned_cols=108  Identities=13%  Similarity=0.041  Sum_probs=62.7

Q ss_pred             HHHHHHHHhccccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510         51 ETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFA  130 (171)
Q Consensus        51 Kttli~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~  130 (171)
                      |+.+.+|...+.+-+. +. +....+++|+...+.++++++++++|+|++++.+     .|...+.+.  ..+.|+++|+
T Consensus        35 ~~~~C~RC~~l~hy~~-~~-~v~~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~--l~~~piilV~  105 (369)
T 3ec1_A           35 EEVICQRCFRLKHYNE-VQ-DVPLDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF--AADNPILLVG  105 (369)
T ss_dssp             --------------------------CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH--CTTSCEEEEE
T ss_pred             CCEEchhHHHhhcccc-cc-CCcCCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH--hCCCCEEEEE
Confidence            4566666665222111 11 2223588999999999999999999999999763     222222111  2478999999


Q ss_pred             eCCCCCCC-CCHHHHHHHH---------------HhhhccCCCHHHHHHHHHH
Q psy11510        131 NKQDIEGA-LTPEDIKNVS---------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       131 nK~Dl~~~-~~~~~~~~~~---------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      ||+|+.+. ...+.+.++.               .+||++|.|++++++.+.+
T Consensus       106 NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~  158 (369)
T 3ec1_A          106 NKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINR  158 (369)
T ss_dssp             ECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             EChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHh
Confidence            99999763 3444444432               3499999999999998864

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.38  E-value=1.3e-07  Score=74.88  Aligned_cols=106  Identities=7%  Similarity=-0.005  Sum_probs=65.3

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhcc-----------------ccC------ceEEEEEecCCccchhH--------HHHHh
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKMI-----------------MTF------RFKLNIWDVGGQKSLRS--------YWRNY   86 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~~-----------------~~~------~~~~~i~d~~g~~~~~~--------~~~~~   86 (171)
                      ..+|+++|.+|+|||||++++.+.                 ...      .-.+.++||||-.....        ....+
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~  239 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLI  239 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence            468999999999999999999760                 000      01257999999533221        11111


Q ss_pred             --hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510         87 --FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS  148 (171)
Q Consensus        87 --~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  148 (171)
                        .+..+.++++++......+..+.    . +......+.|++++.||.|.......+...+.+
T Consensus       240 ~~~~~i~~~~~~l~~~~~~~~g~l~----~-~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~  298 (368)
T 3h2y_A          240 TPTKEIKPMVFQLNEEQTLFFSGLA----R-FDYVSGGRRAFTCHFSNRLTIHRTKLEKADELY  298 (368)
T ss_dssp             SCSSCCCCEEEEECTTEEEEETTTE----E-EEEEESSSEEEEEEECTTSCEEEEEHHHHHHHH
T ss_pred             ccccccCceEEEEcCCCEEEEcceE----E-EEEecCCCceEEEEecCccccccccHHHHHHHH
Confidence              25688899999874321111110    0 122223578999999999987655555555554

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.37  E-value=2.6e-06  Score=68.80  Aligned_cols=94  Identities=14%  Similarity=0.132  Sum_probs=60.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------c
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------------------------------------------I   61 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------------------------------------------~   61 (171)
                      +...|+++|.+|+||||++..+..                                                       .
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999874                                                       0


Q ss_pred             ccCceEEEEEecCCccchhH-HH---H--HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510         62 MTFRFKLNIWDVGGQKSLRS-YW---R--NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus        62 ~~~~~~~~i~d~~g~~~~~~-~~---~--~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                      ...+..+.++||+|...... ..   .  .....+|.+++|+|++.........   ..+.+    .-.+..+|.||.|.
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~----~~~i~gVIlTKlD~  251 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKE----ATPIGSIIVTKLDG  251 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHH----SCTTEEEEEECCSS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHh----hCCCeEEEEECCCC
Confidence            01236678999999543221 11   1  1123689999999998765432222   22211    12355678899997


Q ss_pred             CC
Q psy11510        136 EG  137 (171)
Q Consensus       136 ~~  137 (171)
                      ..
T Consensus       252 ~~  253 (443)
T 3dm5_A          252 SA  253 (443)
T ss_dssp             CS
T ss_pred             cc
Confidence            54

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.34  E-value=6e-07  Score=68.49  Aligned_cols=92  Identities=13%  Similarity=0.020  Sum_probs=58.7

Q ss_pred             EEecCCcc-chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510         70 IWDVGGQK-SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS  148 (171)
Q Consensus        70 i~d~~g~~-~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  148 (171)
                      +-..||+. .........+..+|+++.|+|+.++.+....  .+.+++     .++|.++|+||+|+.+....+...++.
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~   75 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF   75 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence            34457754 3444555668899999999999998776421  122332     478999999999997631222223333


Q ss_pred             --------HhhhccCCCHHHHHHHHHHH
Q psy11510        149 --------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       149 --------~~sa~~~~~v~~~f~~l~~~  168 (171)
                              ..||+++.|++++++.+.+.
T Consensus        76 ~~~g~~~i~iSA~~~~gi~~L~~~i~~~  103 (282)
T 1puj_A           76 ENQGIRSLSINSVNGQGLNQIVPASKEI  103 (282)
T ss_dssp             HTTTCCEEECCTTTCTTGGGHHHHHHHH
T ss_pred             HhcCCcEEEEECCCcccHHHHHHHHHHH
Confidence                    24899999999999877554

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.25  E-value=1.4e-06  Score=70.81  Aligned_cols=79  Identities=15%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc--chhHHH--------HH
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK--SLRSYW--------RN   85 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~--~~~~~~--------~~   85 (171)
                      ....+|+++|.+|+||||+.+++..                    ..+..+...+||..|.+  +.+..+        ..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999875                    01111334678988873  334443        55


Q ss_pred             hhhCCCEEEEEEeCCChhhHHHHHHHHHHH
Q psy11510         86 YFESTDGLIWVVDSADKRRLEDCARELHEL  115 (171)
Q Consensus        86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i  115 (171)
                      ++..+++.++|+|.++. +.+.-..|+..+
T Consensus       117 ~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~  145 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNT-TRERRAMIFNFG  145 (469)
T ss_dssp             HHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence            66678899999999887 444444554433

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.23  E-value=7.3e-06  Score=66.02  Aligned_cols=93  Identities=18%  Similarity=0.218  Sum_probs=58.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------c
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------------------------------------------I   61 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------------------------------------------~   61 (171)
                      +...|+++|++||||||++..+..                                                       .
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a  175 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF  175 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence            467899999999999999999874                                                       0


Q ss_pred             ccCceEEEEEecCCccc--hh-HHH---HHh--hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCC
Q psy11510         62 MTFRFKLNIWDVGGQKS--LR-SYW---RNY--FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus        62 ~~~~~~~~i~d~~g~~~--~~-~~~---~~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                      ......+.+.||+|...  .. ...   ...  .-.++.+++|+|+............+.+.       -.+..+|.||.
T Consensus       176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~~-------~~~~gVIlTKl  248 (433)
T 3kl4_A          176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQA-------SPIGSVIITKM  248 (433)
T ss_dssp             TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHHH-------CSSEEEEEECG
T ss_pred             HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhcc-------cCCcEEEEecc
Confidence            11245677999999533  11 111   111  22579999999998765433332223322       13455667777


Q ss_pred             CCC
Q psy11510        134 DIE  136 (171)
Q Consensus       134 Dl~  136 (171)
                      |..
T Consensus       249 D~~  251 (433)
T 3kl4_A          249 DGT  251 (433)
T ss_dssp             GGC
T ss_pred             ccc
Confidence            754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.19  E-value=2.5e-05  Score=62.60  Aligned_cols=90  Identities=16%  Similarity=0.224  Sum_probs=54.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc----------cccCc-------------eEEEEEecCCccc----hhHHHH-Hhhh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM----------IMTFR-------------FKLNIWDVGGQKS----LRSYWR-NYFE   88 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~----------~~~~~-------------~~~~i~d~~g~~~----~~~~~~-~~~~   88 (171)
                      ....++++|+.|||||||++.+.+          ..+..             -.+.+||++|-..    ...... .-+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            344899999999999999999998          11111             1468899998432    111111 1233


Q ss_pred             CCCEEEEEEeCC--ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510         89 STDGLIWVVDSA--DKRRLEDCARELHELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus        89 ~~~~ii~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                      +.+.++. ++..  ...... +   ...+..    .+.|+++|.||.|+
T Consensus       148 ~~~~~~~-lS~G~~~kqrv~-l---a~aL~~----~~~p~~lV~tkpdl  187 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKNDID-I---AKAISM----MKKEFYFVRTKVDS  187 (413)
T ss_dssp             GCSEEEE-EESSCCCHHHHH-H---HHHHHH----TTCEEEEEECCHHH
T ss_pred             ccCCeEE-eCCCCccHHHHH-H---HHHHHh----cCCCeEEEEecCcc
Confidence            4565555 7765  332221 1   222222    36899999999886

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.09  E-value=1.8e-05  Score=63.81  Aligned_cols=94  Identities=17%  Similarity=0.191  Sum_probs=61.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-----------c-----------------------------cc------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-----------I-----------------------------MT------------   63 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-----------~-----------------------------~~------------   63 (171)
                      .+...|+++|.+|+||||++..+..           +                             ..            
T Consensus        97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~  176 (432)
T 2v3c_C           97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME  176 (432)
T ss_dssp             SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence            3456899999999999999999876           0                             10            


Q ss_pred             --CceEEEEEecCCccchhH-HHH---Hh--hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCC-e-EEEEEeCC
Q psy11510         64 --FRFKLNIWDVGGQKSLRS-YWR---NY--FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA-T-LLVFANKQ  133 (171)
Q Consensus        64 --~~~~~~i~d~~g~~~~~~-~~~---~~--~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p-~ivv~nK~  133 (171)
                        ....+.++||+|...... +..   ..  ...+|.+++|+|+......   ......+ .    ... | ..+|.||.
T Consensus       177 ~~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~-~----~~~~~i~gvVlnK~  248 (432)
T 2v3c_C          177 KFKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQA---GIQAKAF-K----EAVGEIGSIIVTKL  248 (432)
T ss_dssp             TTSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGH---HHHHHHH-H----TTSCSCEEEEEECS
T ss_pred             HhhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHH---HHHHHHH-h----hcccCCeEEEEeCC
Confidence              124578999999654321 111   11  1268999999998765422   1212222 1    234 5 88899999


Q ss_pred             CCCC
Q psy11510        134 DIEG  137 (171)
Q Consensus       134 Dl~~  137 (171)
                      |...
T Consensus       249 D~~~  252 (432)
T 2v3c_C          249 DGSA  252 (432)
T ss_dssp             SSCS
T ss_pred             CCcc
Confidence            9854

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.07  E-value=1.6e-06  Score=65.37  Aligned_cols=40  Identities=28%  Similarity=0.307  Sum_probs=31.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-----------c------ccCceEEEEEecCCccc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-----------I------MTFRFKLNIWDVGGQKS   78 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-----------~------~~~~~~~~i~d~~g~~~   78 (171)
                      ++++++|.+|+|||||++++.+           .      ...+..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEEEEECCCccc
Confidence            7999999999999999999997           0      01123568999999654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.05  E-value=3.3e-06  Score=64.38  Aligned_cols=42  Identities=14%  Similarity=0.165  Sum_probs=32.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-----------c--ccC----ceEEEEEecCCcc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-----------I--MTF----RFKLNIWDVGGQK   77 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-----------~--~~~----~~~~~i~d~~g~~   77 (171)
                      ...++++++|.+|||||||++++.+           .  ...    +..+.++||||-.
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCCCEEEEECcCcC
Confidence            4568999999999999999999987           0  001    1247899999953

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.97  E-value=3.1e-05  Score=59.37  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=60.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------------------c----------------------c
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------------------I----------------------M   62 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------------------~----------------------~   62 (171)
                      ...++++|.+|+||||++..+..                                 +                      .
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~  177 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL  177 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence            56788899999999999999885                                 0                      0


Q ss_pred             cCceEEEEEecCCccc--hhH-HHH-----HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCC
Q psy11510         63 TFRFKLNIWDVGGQKS--LRS-YWR-----NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQ  133 (171)
Q Consensus        63 ~~~~~~~i~d~~g~~~--~~~-~~~-----~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~  133 (171)
                      .....+.+.||||...  ... +..     .....+|.+++|+|+......   ......+..     ..| ..+|.||.
T Consensus       178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~---~~~~~~~~~-----~~~i~gvVlnk~  249 (297)
T 1j8m_F          178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA---YDLASKFNQ-----ASKIGTIIITKM  249 (297)
T ss_dssp             HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH-----TCTTEEEEEECG
T ss_pred             hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHH---HHHHHHHHh-----hCCCCEEEEeCC
Confidence            0345688999999765  321 211     124579999999998754322   222222211     345 67889999


Q ss_pred             CCCC
Q psy11510        134 DIEG  137 (171)
Q Consensus       134 Dl~~  137 (171)
                      |...
T Consensus       250 D~~~  253 (297)
T 1j8m_F          250 DGTA  253 (297)
T ss_dssp             GGCT
T ss_pred             CCCc
Confidence            9754

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.95  E-value=1.2e-05  Score=67.49  Aligned_cols=21  Identities=10%  Similarity=0.358  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .++++|+.|||||||++.+.+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~G   67 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSG   67 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHS
T ss_pred             eEEEECCCCChHHHHHHHHhC
Confidence            399999999999999999988

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.73  E-value=0.00013  Score=56.63  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=22.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.--++++|+.||||||+++.+.+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag  151 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLAN  151 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999987

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.69  E-value=0.00013  Score=59.74  Aligned_cols=26  Identities=15%  Similarity=0.069  Sum_probs=22.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+.--++++|+.||||||+++.+.+
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHH
Confidence            34566799999999999999999987

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.67  E-value=1.1e-05  Score=60.80  Aligned_cols=84  Identities=12%  Similarity=0.085  Sum_probs=53.1

Q ss_pred             CCcc-chhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----
Q psy11510         74 GGQK-SLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----  148 (171)
Q Consensus        74 ~g~~-~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----  148 (171)
                      ||+. +........+.++|+++.|+|+.++.+.....  +. +     . ++|.++|+||+|+.+....+...++.    
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g   75 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQG   75 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHcC
Confidence            5543 22334555678999999999999887654211  11 1     1 78999999999997632122222222    


Q ss_pred             ---HhhhccCCCHHHHHHHHH
Q psy11510        149 ---EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       149 ---~~sa~~~~~v~~~f~~l~  166 (171)
                         ..||+++.|++++++.+.
T Consensus        76 ~~v~iSa~~~~gi~~L~~~l~   96 (262)
T 3cnl_A           76 KRVITTHKGEPRKVLLKKLSF   96 (262)
T ss_dssp             CCEEECCTTSCHHHHHHHHCC
T ss_pred             CeEEEECCCCcCHHHHHHHHH
Confidence               357889999998887653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.67  E-value=0.00037  Score=56.18  Aligned_cols=94  Identities=15%  Similarity=0.106  Sum_probs=59.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------c-----------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------------I-----------------   61 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------------~-----------------   61 (171)
                      .+...|+++|.+|+||||+...+..                                     +                 
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~  177 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK  177 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence            4567788999999999999998872                                     0                 


Q ss_pred             --ccCceEEEEEecCCccchhH-HHH-----HhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeC
Q psy11510         62 --MTFRFKLNIWDVGGQKSLRS-YWR-----NYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANK  132 (171)
Q Consensus        62 --~~~~~~~~i~d~~g~~~~~~-~~~-----~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK  132 (171)
                        ...+..+.++||||...... ...     .....++.+++|+|+......-   .....+ .    +..+ .-+|.||
T Consensus       178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~---~~~~~f-~----~~l~i~gvVlnK  249 (433)
T 2xxa_A          178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAA---NTAKAF-N----EALPLTGVVLTK  249 (433)
T ss_dssp             HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHH---HHHHHH-H----HHSCCCCEEEEC
T ss_pred             HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHH---HHHHHH-h----ccCCCeEEEEec
Confidence              01345688999999644321 111     1234789999999987653322   112222 1    1233 3467899


Q ss_pred             CCCCC
Q psy11510        133 QDIEG  137 (171)
Q Consensus       133 ~Dl~~  137 (171)
                      .|...
T Consensus       250 ~D~~~  254 (433)
T 2xxa_A          250 VDGDA  254 (433)
T ss_dssp             TTSSS
T ss_pred             CCCCc
Confidence            99754

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.64  E-value=5.8e-05  Score=63.04  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=35.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------------c--------ccCceEEEEEecCCccc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------------I--------MTFRFKLNIWDVGGQKS   78 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------------~--------~~~~~~~~i~d~~g~~~   78 (171)
                      ..+..+|+++|.+|+|||||++++.+                 +        ...+..+.++||||-..
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            46789999999999999999999987                 1        12345688999999643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.61  E-value=0.00032  Score=53.91  Aligned_cols=24  Identities=21%  Similarity=0.127  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++|+.||||||+++.+.+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            455789999999999999999986

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.55  E-value=0.00066  Score=48.36  Aligned_cols=69  Identities=12%  Similarity=0.033  Sum_probs=45.1

Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEE-RLAGATLLVFANKQDIEG  137 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~  137 (171)
                      .+.+.++|+|+..  .......+..+|.+++++..+...  ..+...+..+.+.. ..++.++.+|.|+.|...
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~  144 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA  144 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence            4667889999865  334455567799999999876554  44444444442211 134678899999998643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.50  E-value=0.00063  Score=52.31  Aligned_cols=25  Identities=16%  Similarity=0.065  Sum_probs=21.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.--|+++|+.|+||||++..+..
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~  126 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAK  126 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHH
Confidence            3445789999999999999999887

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.44  E-value=0.00079  Score=54.10  Aligned_cols=24  Identities=17%  Similarity=0.151  Sum_probs=20.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.|+++|+.|+||||++..+..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~  120 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            445688889999999999999887

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.43  E-value=0.00037  Score=47.87  Aligned_cols=24  Identities=8%  Similarity=0.162  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++|++|+|||||++.+.+
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            344688999999999999999998

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.41  E-value=0.00064  Score=47.99  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-++++|.+|+|||||++++..
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4588999999999999999987

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.30  E-value=0.0033  Score=48.79  Aligned_cols=25  Identities=12%  Similarity=0.024  Sum_probs=22.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...-.+++.|++|+|||++++.+..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHH
Confidence            3455899999999999999999987

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.30  E-value=0.00013  Score=51.63  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+++++|+.|+|||||++.+.+
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g   22 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999987

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.25  E-value=0.00014  Score=51.26  Aligned_cols=22  Identities=18%  Similarity=0.119  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      --++++|++|||||||++.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999987

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.23  E-value=0.0012  Score=46.95  Aligned_cols=21  Identities=10%  Similarity=-0.077  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999999987

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.19  E-value=0.00019  Score=55.33  Aligned_cols=75  Identities=9%  Similarity=-0.052  Sum_probs=49.0

Q ss_pred             HhhhCCCEEEEEEeCCChhh-HHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHHHHH--------Hhh
Q psy11510         85 NYFESTDGLIWVVDSADKRR-LEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIKNVS--------EKA  151 (171)
Q Consensus        85 ~~~~~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~~~~--------~~s  151 (171)
                      ....++|.+++|+|+.++.. ...+.+++....    ..++|.++|.||+|+.+...    .++..+.+        ..|
T Consensus        82 ~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~s  157 (307)
T 1t9h_A           82 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS  157 (307)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC
T ss_pred             HHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEe
Confidence            35789999999999987553 444444443331    25789999999999976422    12333333        236


Q ss_pred             hccCCCHHHHHH
Q psy11510        152 TKVKLNKQSKFQ  163 (171)
Q Consensus       152 a~~~~~v~~~f~  163 (171)
                      |.++.|++++++
T Consensus       158 a~~~~g~~~L~~  169 (307)
T 1t9h_A          158 SKDQDSLADIIP  169 (307)
T ss_dssp             HHHHTTCTTTGG
T ss_pred             cCCCCCHHHHHh
Confidence            777778776654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.17  E-value=0.00018  Score=51.61  Aligned_cols=22  Identities=27%  Similarity=0.241  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.++++|++|||||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999999987

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.16  E-value=0.0003  Score=49.68  Aligned_cols=26  Identities=12%  Similarity=0.124  Sum_probs=22.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMI   61 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~   61 (171)
                      .+.-.++++|++||||||+++.+...
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            34456999999999999999999873

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.06  E-value=0.0026  Score=48.54  Aligned_cols=24  Identities=17%  Similarity=0.151  Sum_probs=20.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++|+.|+||||++..+..
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~  120 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLAL  120 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            445678889999999999999887

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.06  E-value=0.00031  Score=50.16  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |+++|++|||||||++++..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            79999999999999999976

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.05  E-value=0.00029  Score=50.23  Aligned_cols=22  Identities=9%  Similarity=0.152  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      --++++|+.||||||+++.+.+
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHh
Confidence            3589999999999999999987

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.02  E-value=0.00074  Score=48.98  Aligned_cols=38  Identities=13%  Similarity=0.126  Sum_probs=27.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVG   74 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~   74 (171)
                      ..-.+++.|++|+|||++++.+.. .......+..++..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~   89 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLG   89 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence            456899999999999999999987 32223444444443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.02  E-value=0.00039  Score=50.11  Aligned_cols=26  Identities=12%  Similarity=0.129  Sum_probs=23.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+...|.++|++|||||||++.+.+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            35677899999999999999999988

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.00  E-value=0.00034  Score=51.17  Aligned_cols=24  Identities=4%  Similarity=0.063  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--++++|++|||||||++.+.+
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            345688999999999999999988

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.00  E-value=0.0011  Score=45.04  Aligned_cols=24  Identities=13%  Similarity=-0.054  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ....|++.|++|+|||++.+.+..
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999999987

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.99  E-value=0.0006  Score=48.08  Aligned_cols=26  Identities=23%  Similarity=0.149  Sum_probs=23.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+...|+++|.+||||||+.+.+..
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            45667899999999999999999987

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.98  E-value=0.00036  Score=50.84  Aligned_cols=25  Identities=16%  Similarity=0.117  Sum_probs=21.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKMI   61 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~~   61 (171)
                      +.-.++++|++|||||||++.+.+.
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4456899999999999999999883

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.97  E-value=0.00037  Score=50.17  Aligned_cols=24  Identities=17%  Similarity=0.108  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--++++|+.|||||||++.+.+
T Consensus        19 ~Gei~~l~GpnGsGKSTLl~~l~g   42 (207)
T 1znw_A           19 VGRVVVLSGPSAVGKSTVVRCLRE   42 (207)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            344688999999999999999988

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.96  E-value=0.0048  Score=47.65  Aligned_cols=25  Identities=20%  Similarity=0.231  Sum_probs=21.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.--|+++|+.|+||||++..+..
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~  127 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMAN  127 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4456788999999999999999887

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.96  E-value=0.00037  Score=48.75  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=18.4

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHh
Q psy11510         38 VAVVSLLRNKNGGETLILKKKK   59 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~   59 (171)
                      .--++++|++|||||||++.+.
T Consensus         9 gei~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHc
Confidence            3457899999999999999544

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.94  E-value=0.00043  Score=49.97  Aligned_cols=23  Identities=9%  Similarity=-0.036  Sum_probs=20.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .--|+++|++||||||+++.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            44689999999999999999987

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.92  E-value=0.00061  Score=49.11  Aligned_cols=24  Identities=13%  Similarity=0.069  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--|+++|++|||||||++.+..
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHh
Confidence            445689999999999999999986

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.90  E-value=0.00052  Score=49.26  Aligned_cols=24  Identities=13%  Similarity=0.148  Sum_probs=20.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +..-|+++|++||||||+.+.+..
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999976

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.90  E-value=0.00062  Score=48.88  Aligned_cols=26  Identities=12%  Similarity=0.157  Sum_probs=22.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMI   61 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~   61 (171)
                      .+...|.++|+.||||||+++.+.+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999883

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.88  E-value=0.00061  Score=46.93  Aligned_cols=20  Identities=15%  Similarity=0.132  Sum_probs=18.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHH
Q psy11510         39 AVVSLLRNKNGGETLILKKK   58 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~   58 (171)
                      .-|++.|++||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.87  E-value=0.00064  Score=48.47  Aligned_cols=24  Identities=13%  Similarity=0.033  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|+++|++||||||+++.+..
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999987

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.87  E-value=0.0019  Score=43.63  Aligned_cols=88  Identities=9%  Similarity=-0.030  Sum_probs=45.9

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhccccCceEEEEEecCCccchhHHHHHhhhCC-CEEEEEEeCCChhhHHHHHHHHHHHH
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFEST-DGLIWVVDSADKRRLEDCARELHELL  116 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~-~~ii~v~d~~~~~s~~~~~~~~~~i~  116 (171)
                      ...|++.|++|+|||++.+.+.....   .+...+...  .........+..+ .+++++=++..-. .+ .+..+..++
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~~~---~~~~~~~~~--~~~~~~~~~~~~a~~~~l~lDei~~l~-~~-~q~~Ll~~l   99 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKNGT---PWVSPARVE--YLIDMPMELLQKAEGGVLYVGDIAQYS-RN-IQTGITFII   99 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCTTS---CEECCSSTT--HHHHCHHHHHHHTTTSEEEEEECTTCC-HH-HHHHHHHHH
T ss_pred             CCcEEEECCCCccHHHHHHHHHHhCC---CeEEechhh--CChHhhhhHHHhCCCCeEEEeChHHCC-HH-HHHHHHHHH
Confidence            45699999999999999999987332   333333332  1111223334333 3455544444321 11 222233444


Q ss_pred             hccccCCCeEEEEEeC
Q psy11510        117 QEERLAGATLLVFANK  132 (171)
Q Consensus       117 ~~~~~~~~p~ivv~nK  132 (171)
                      +.....+..+|...|.
T Consensus       100 ~~~~~~~~~iI~~tn~  115 (143)
T 3co5_A          100 GKAERCRVRVIASCSY  115 (143)
T ss_dssp             HHHTTTTCEEEEEEEE
T ss_pred             HhCCCCCEEEEEecCC
Confidence            4332345666666665

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.86  E-value=0.00061  Score=47.04  Aligned_cols=21  Identities=10%  Similarity=-0.051  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .|++.|++||||||+.+.+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999976

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.86  E-value=0.00032  Score=51.34  Aligned_cols=23  Identities=17%  Similarity=0.137  Sum_probs=16.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHh-c
Q psy11510         38 VAVVSLLRNKNGGETLILKKKK-M   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~-~   60 (171)
                      .--++++|+.||||||+++.+. .
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~   50 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEK   50 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            3468999999999999999999 5

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.84  E-value=0.00059  Score=47.39  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++|+.|+|||||++.+.+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            444689999999999999999998

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.84  E-value=0.00083  Score=47.31  Aligned_cols=24  Identities=13%  Similarity=0.149  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|++.|.+||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.83  E-value=0.00063  Score=47.16  Aligned_cols=22  Identities=14%  Similarity=0.141  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..|+++|++||||||+.+.+..
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999999987

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=96.83  E-value=0.00062  Score=50.31  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=21.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus        30 ~Ge~~~iiG~nGsGKSTLl~~l~G   53 (235)
T 3tif_A           30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (235)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            444689999999999999999998

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.82  E-value=0.0053  Score=45.83  Aligned_cols=26  Identities=19%  Similarity=0.132  Sum_probs=23.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ......+++.|++|+|||++++.+..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence            34567899999999999999999987

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.82  E-value=0.0008  Score=46.78  Aligned_cols=22  Identities=5%  Similarity=0.084  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..|++.|++||||||+.+.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999875

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.81  E-value=0.00071  Score=48.75  Aligned_cols=22  Identities=9%  Similarity=0.019  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++|++.|++||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999965

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.80  E-value=0.00066  Score=47.94  Aligned_cols=21  Identities=10%  Similarity=0.063  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -++++|++||||||+++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999986

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.79  E-value=0.0007  Score=47.15  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-|++.|.+||||||+.+.+..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999876

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.78  E-value=0.00083  Score=48.67  Aligned_cols=24  Identities=8%  Similarity=0.041  Sum_probs=21.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|+++|.+||||||+.+.+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999876

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.78  E-value=0.00077  Score=48.61  Aligned_cols=22  Identities=9%  Similarity=-0.025  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++|+++|++||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.77  E-value=0.00081  Score=47.73  Aligned_cols=21  Identities=10%  Similarity=0.213  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999999987

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.77  E-value=0.00083  Score=47.15  Aligned_cols=23  Identities=17%  Similarity=-0.060  Sum_probs=20.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|++.|.+||||||+.+.+..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999987

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=96.77  E-value=0.00079  Score=49.34  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .=.+.++|+.|||||||++-+.+
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~G   52 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGL   52 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            34688999999999999999998

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.76  E-value=0.00087  Score=48.83  Aligned_cols=24  Identities=4%  Similarity=0.129  Sum_probs=20.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|+++|.+||||||+.+.+..
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHH
Confidence            446899999999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.76  E-value=0.00097  Score=46.76  Aligned_cols=24  Identities=13%  Similarity=0.030  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|+++|.+||||||+.+.+..
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999974

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.76  E-value=0.00088  Score=49.47  Aligned_cols=23  Identities=9%  Similarity=0.180  Sum_probs=21.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKK   59 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~   59 (171)
                      +...|+++|++||||||+++.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999999

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.76  E-value=0.0012  Score=47.25  Aligned_cols=24  Identities=8%  Similarity=-0.067  Sum_probs=21.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|++.|.+||||||+.+.+..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            457899999999999999999986

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.75  E-value=0.00087  Score=47.90  Aligned_cols=25  Identities=16%  Similarity=0.104  Sum_probs=21.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.-.|+++|++||||||+++.+..
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999976

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.75  E-value=0.00098  Score=46.80  Aligned_cols=33  Identities=15%  Similarity=0.096  Sum_probs=24.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEe
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWD   72 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d   72 (171)
                      .|++.|.+||||||+.+.+.. ....++.+...+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~   36 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence            589999999999999999987 333333344444

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.74  E-value=0.0011  Score=46.10  Aligned_cols=24  Identities=8%  Similarity=0.180  Sum_probs=21.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|+++|++||||||+.+.+..
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHH
Confidence            345799999999999999999875

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.73  E-value=0.0011  Score=47.33  Aligned_cols=26  Identities=19%  Similarity=0.023  Sum_probs=23.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ....+.|+++|.+||||||+.+.+..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45567899999999999999999876

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.72  E-value=0.0032  Score=48.26  Aligned_cols=24  Identities=13%  Similarity=0.099  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-.+++.|++|+|||++++.+.+
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            345699999999999999999988

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.72  E-value=0.00099  Score=47.56  Aligned_cols=24  Identities=17%  Similarity=0.062  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.|+++|++||||||+.+.+..
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            345899999999999999999975

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.71  E-value=0.0045  Score=43.82  Aligned_cols=21  Identities=14%  Similarity=-0.008  Sum_probs=17.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -+++.|+.|+||||++.++..
T Consensus         5 i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            5 LTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999865554

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.69  E-value=0.00092  Score=47.72  Aligned_cols=23  Identities=4%  Similarity=0.065  Sum_probs=20.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|+++|.+||||||+.+.+..
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999876

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.69  E-value=0.0064  Score=47.31  Aligned_cols=23  Identities=17%  Similarity=-0.013  Sum_probs=21.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-.+++.|++|+|||++++.+..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            44899999999999999999987

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.68  E-value=0.0034  Score=49.28  Aligned_cols=74  Identities=14%  Similarity=0.007  Sum_probs=45.7

Q ss_pred             hhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-----------Hhhhcc
Q psy11510         87 FESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-----------EKATKV  154 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-----------~~sa~~  154 (171)
                      ..++|.+++|... .|. +...+.+++....    ..++|.++|.||+|+.+....+.+..+.           ..|+.+
T Consensus       128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~----~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCE----TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EECCCEEEEEEES-TTTCCHHHHHHHHHHHH----HHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            5789999987654 443 3444444443332    1478889999999997632211122222           337888


Q ss_pred             CCCHHHHHHHH
Q psy11510        155 KLNKQSKFQVL  165 (171)
Q Consensus       155 ~~~v~~~f~~l  165 (171)
                      +.|++++...+
T Consensus       203 ~~gl~~L~~~~  213 (358)
T 2rcn_A          203 QDGLKPLEEAL  213 (358)
T ss_dssp             TBTHHHHHHHH
T ss_pred             CcCHHHHHHhc
Confidence            99988876543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.68  E-value=0.0072  Score=47.00  Aligned_cols=21  Identities=29%  Similarity=0.310  Sum_probs=20.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .+++.|++|+||||+++.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999988

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.67  E-value=0.0011  Score=47.33  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+|+++|..||||||+.+.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999876

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.67  E-value=0.0012  Score=47.04  Aligned_cols=23  Identities=9%  Similarity=-0.002  Sum_probs=21.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|++.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999987

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.67  E-value=0.00083  Score=47.98  Aligned_cols=21  Identities=24%  Similarity=0.192  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.++|+.|+||||+++.+.+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            588999999999999999887

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.67  E-value=0.00089  Score=50.27  Aligned_cols=25  Identities=4%  Similarity=0.114  Sum_probs=22.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.-.++++|+.||||||+++.+.+
T Consensus        23 ~~g~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           23 RKMGLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH
Confidence            3445799999999999999999998

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.67  E-value=0.0011  Score=47.99  Aligned_cols=22  Identities=14%  Similarity=0.182  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..|.++|++||||||+.+.+..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999876

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.67  E-value=0.018  Score=46.32  Aligned_cols=25  Identities=24%  Similarity=0.158  Sum_probs=22.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.--|++.|++|+|||++++.+.+
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            4567899999999999999999998

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=96.67  E-value=0.00098  Score=49.42  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=20.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      =.++++|+.|||||||++-+.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~G   46 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhC
Confidence            4688999999999999999998

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.66  E-value=0.0012  Score=48.77  Aligned_cols=25  Identities=12%  Similarity=-0.043  Sum_probs=22.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+..+|++.|++||||||+.+.+..
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3678999999999999999999975

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=96.66  E-value=0.0011  Score=49.07  Aligned_cols=24  Identities=17%  Similarity=0.212  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus        30 ~Ge~~~i~G~nGsGKSTLl~~l~G   53 (237)
T 2cbz_A           30 EGALVAVVGQVGCGKSSLLSALLA   53 (237)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999998

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.66  E-value=0.0013  Score=46.91  Aligned_cols=25  Identities=8%  Similarity=0.041  Sum_probs=22.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.-.|+++|++||||||+.+.+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999987

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.65  E-value=0.0012  Score=46.86  Aligned_cols=23  Identities=13%  Similarity=-0.006  Sum_probs=21.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|++.|.+||||||+.+.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46799999999999999999987

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.65  E-value=0.0012  Score=46.41  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=20.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|++.|.+||||||+.+.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998865

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=96.65  E-value=0.046  Score=39.67  Aligned_cols=61  Identities=20%  Similarity=0.248  Sum_probs=40.9

Q ss_pred             hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510         86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS  148 (171)
Q Consensus        86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  148 (171)
                      .+..+|.+++++..+ ..++..+...+..+ +....+...+.+|.|+.+.......+++.+.+
T Consensus       137 ~l~~ad~viiv~~~~-~~~~~~~~~~~~~l-~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~  197 (245)
T 3ea0_A          137 VLEHLDELCIVTTPS-LQSLRRAGQLLKLC-KEFEKPISRIEIILNRADTNSRITSDEIEKVI  197 (245)
T ss_dssp             HGGGCSEEEEEECSS-HHHHHHHHHHHHHH-HTCSSCCSCEEEEEESTTSCTTSCHHHHHHHH
T ss_pred             HHHHCCEEEEEecCc-HHHHHHHHHHHHHH-HHhCCCccceEEEEecCCCCCCCCHHHHHHHh
Confidence            355689999988854 55666666666555 33323345688899999976666666666655

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.65  E-value=0.001  Score=49.98  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus        31 ~Ge~~~liG~nGsGKSTLlk~l~G   54 (262)
T 1b0u_A           31 AGDVISIIGSSGSGKSTFLRCINF   54 (262)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            444688999999999999999998

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.64  E-value=0.0012  Score=47.69  Aligned_cols=22  Identities=14%  Similarity=-0.028  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.64  E-value=0.0011  Score=46.45  Aligned_cols=23  Identities=13%  Similarity=0.122  Sum_probs=20.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|+++|++||||||+.+.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999999975

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.64  E-value=0.0014  Score=46.20  Aligned_cols=24  Identities=8%  Similarity=0.021  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|+++|.+||||||+.+.+..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999998865

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.64  E-value=0.0014  Score=49.75  Aligned_cols=26  Identities=15%  Similarity=0.028  Sum_probs=22.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+..-|++.|++||||||+.+.+..
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44567899999999999999999975

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=96.64  E-value=0.001  Score=50.37  Aligned_cols=24  Identities=13%  Similarity=0.206  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus        33 ~Ge~~~iiGpnGsGKSTLl~~l~G   56 (275)
T 3gfo_A           33 RGEVTAILGGNGVGKSTLFQNFNG   56 (275)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHc
Confidence            344689999999999999999998

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.63  E-value=0.0011  Score=48.34  Aligned_cols=22  Identities=27%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      =.++++|+.|+|||||++-+.+
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3588999999999999999998

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.63  E-value=0.0052  Score=47.64  Aligned_cols=23  Identities=17%  Similarity=0.078  Sum_probs=21.1

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-.++++|+.|+|||||++.+.+
T Consensus       171 g~~v~i~G~~GsGKTTll~~l~g  193 (330)
T 2pt7_A          171 GKNVIVCGGTGSGKTTYIKSIME  193 (330)
T ss_dssp             TCCEEEEESTTSCHHHHHHHGGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34799999999999999999998

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.63  E-value=0.021  Score=43.85  Aligned_cols=25  Identities=12%  Similarity=0.121  Sum_probs=22.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+...+++.|++|+|||++++.+..
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHH
Confidence            3456899999999999999999987

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.62  E-value=0.0012  Score=49.19  Aligned_cols=24  Identities=13%  Similarity=0.243  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999998

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.62  E-value=0.0014  Score=46.20  Aligned_cols=24  Identities=8%  Similarity=0.123  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|++.|.+||||||+.+.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.62  E-value=0.0019  Score=46.29  Aligned_cols=26  Identities=19%  Similarity=0.238  Sum_probs=22.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+...|+++|++||||||+.+.+..
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34557899999999999999999987

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.61  E-value=0.0012  Score=48.90  Aligned_cols=24  Identities=13%  Similarity=0.289  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++-+.+
T Consensus        27 ~Ge~~~i~G~nGsGKSTLl~~l~G   50 (243)
T 1mv5_A           27 PNSIIAFAGPSGGGKSTIFSLLER   50 (243)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            445789999999999999999998

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.61  E-value=0.0011  Score=49.89  Aligned_cols=24  Identities=13%  Similarity=0.266  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.+.++|+.|||||||++-+.+
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~G   59 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTG   59 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            445688999999999999999998

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.61  E-value=0.014  Score=46.92  Aligned_cols=25  Identities=12%  Similarity=0.081  Sum_probs=22.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +++-.|++.|++|+|||++++.+.+
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHH
Confidence            4567899999999999999999998

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.60  E-value=0.00092  Score=46.83  Aligned_cols=24  Identities=8%  Similarity=0.029  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++|++|+|||||++.+.+
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            356789999999999999999988

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.59  E-value=0.0034  Score=46.05  Aligned_cols=39  Identities=10%  Similarity=0.230  Sum_probs=28.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG   75 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g   75 (171)
                      .+..-|++.|++||||||+++.+.. ... ...+.....|+
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~   63 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPG   63 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCC
Confidence            3567899999999999999999988 332 33443444444

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.59  E-value=0.0013  Score=48.33  Aligned_cols=24  Identities=13%  Similarity=0.116  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++-+.+
T Consensus        33 ~Ge~~~i~G~nGsGKSTLl~~l~G   56 (229)
T 2pze_A           33 RGQLLAVAGSTGAGKTSLLMMIMG   56 (229)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            334689999999999999999998

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.59  E-value=0.012  Score=44.51  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=22.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.-.+++.|++|+|||++++.+..
T Consensus        45 ~~~~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           45 RPIGSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             SCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHH
Confidence            3445799999999999999999998

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.59  E-value=0.0011  Score=49.51  Aligned_cols=24  Identities=8%  Similarity=0.155  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~G   55 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITG   55 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            444688999999999999999998

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=96.58  E-value=0.013  Score=42.04  Aligned_cols=89  Identities=12%  Similarity=0.112  Sum_probs=51.3

Q ss_pred             EEEEEeCCCCcHH-HHHHHHhccccCceEEEEEecCCccc--------------------hhHHHHHhhhCCCEEEEEEe
Q psy11510         40 VVSLLRNKNGGET-LILKKKKMIMTFRFKLNIWDVGGQKS--------------------LRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        40 ki~liG~~~~GKt-tli~~~~~~~~~~~~~~i~d~~g~~~--------------------~~~~~~~~~~~~~~ii~v~d   98 (171)
                      =.++.|+.|+||| .|++++.+....+.++.++...-..+                    ...++. .++++|++++   
T Consensus        22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~-~~~~~DvIlI---   97 (195)
T 1w4r_A           22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQ-EALGVAVIGI---   97 (195)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHH-HHHTCSEEEE---
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHH-hccCCCEEEE---
Confidence            4567999999999 77777776322223333332110000                    111122 2456776665   


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                       ++.+-|++..+.+..+.    ..++||++.|-+.|=..
T Consensus        98 -DEaQFfk~~ve~~~~L~----~~gk~VI~~GL~~DF~~  131 (195)
T 1w4r_A           98 -DEGQFFPDIVEFCEAMA----NAGKTVIVAALDGTFQR  131 (195)
T ss_dssp             -SSGGGCTTHHHHHHHHH----HTTCEEEEEEESBCTTS
T ss_pred             -EchhhhHHHHHHHHHHH----HCCCeEEEEeccccccc
Confidence             45555544545555553    25899999999998644

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.58  E-value=0.0012  Score=47.80  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--++++|++|+|||||++.+..
T Consensus        24 ~G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           24 TQAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            344689999999999999999986

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.58  E-value=0.0015  Score=46.71  Aligned_cols=24  Identities=17%  Similarity=0.095  Sum_probs=21.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|++.|.+||||||+.+.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999987

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.57  E-value=0.0012  Score=49.61  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus        49 ~Gei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           49 EGEVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEEcCCCCcHHHHHHHHHc
Confidence            344688999999999999999998

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.57  E-value=0.0012  Score=48.86  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++-+.+
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~G   54 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            334689999999999999999998

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.55  E-value=0.0014  Score=47.40  Aligned_cols=22  Identities=14%  Similarity=0.182  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.|+++|++||||+|..+++..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999887

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.55  E-value=0.002  Score=45.84  Aligned_cols=26  Identities=19%  Similarity=0.185  Sum_probs=22.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+...|++.|.+||||||+.+.+..
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34556899999999999999999875

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.55  E-value=0.0013  Score=47.63  Aligned_cols=23  Identities=13%  Similarity=-0.029  Sum_probs=20.7

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|+++|++||||||+.+.+..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999876

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.55  E-value=0.0015  Score=45.05  Aligned_cols=22  Identities=9%  Similarity=-0.006  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999876

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.54  E-value=0.0015  Score=47.28  Aligned_cols=24  Identities=13%  Similarity=0.022  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.+.|+++|.+||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999999876

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.53  E-value=0.0014  Score=49.09  Aligned_cols=24  Identities=17%  Similarity=0.171  Sum_probs=21.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++-+.+
T Consensus        45 ~Ge~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           45 SGTTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344789999999999999999998

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.53  E-value=0.0013  Score=48.97  Aligned_cols=23  Identities=13%  Similarity=0.274  Sum_probs=20.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .=.++++|+.|+|||||++-+.+
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~G   48 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAG   48 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            34689999999999999999998

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.53  E-value=0.0013  Score=48.94  Aligned_cols=25  Identities=16%  Similarity=0.060  Sum_probs=21.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKMI   61 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~~   61 (171)
                      +.=.++++|+.|+|||||++-+.+.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3346899999999999999999984

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.53  E-value=0.0019  Score=45.84  Aligned_cols=26  Identities=8%  Similarity=0.170  Sum_probs=22.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMI   61 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~   61 (171)
                      .+...|+++|..||||||+.+.+...
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC
Confidence            35578999999999999999999864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.53  E-value=0.011  Score=43.41  Aligned_cols=24  Identities=25%  Similarity=0.144  Sum_probs=21.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ....+++.|++|+|||++++.+..
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            445699999999999999999987

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.52  E-value=0.00077  Score=47.42  Aligned_cols=21  Identities=14%  Similarity=0.415  Sum_probs=19.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.++|++|||||||++.+..
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~   24 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMP   24 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999998

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.52  E-value=0.0035  Score=43.94  Aligned_cols=21  Identities=19%  Similarity=0.142  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .|++.|.+||||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999987

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.52  E-value=0.0014  Score=49.11  Aligned_cols=24  Identities=17%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus        40 ~Gei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           40 EGEIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhc
Confidence            334689999999999999999998

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.51  E-value=0.0014  Score=49.33  Aligned_cols=25  Identities=8%  Similarity=0.050  Sum_probs=21.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKMI   61 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~~   61 (171)
                      +.=.++++|+.|||||||++-+.+.
T Consensus        45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           45 PGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3446899999999999999999984

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=96.51  E-value=0.0049  Score=56.10  Aligned_cols=25  Identities=16%  Similarity=0.171  Sum_probs=22.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.=+++++|+.|||||||++-+.+
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~  466 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLR  466 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTT
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhcc
Confidence            3455899999999999999999998

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.021  Score=45.89  Aligned_cols=25  Identities=20%  Similarity=0.165  Sum_probs=22.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.--|++.|++|+|||++++.+.+
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3455799999999999999999998

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.51  E-value=0.0017  Score=46.44  Aligned_cols=22  Identities=23%  Similarity=0.151  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.|.++|+.||||||+.+.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999987

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.51  E-value=0.0015  Score=51.32  Aligned_cols=22  Identities=9%  Similarity=0.064  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.++++|++|||||||++.+.+
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHC
T ss_pred             CEEEEECCCCccHHHHHHHHhc
Confidence            4789999999999999999998

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.50  E-value=0.0014  Score=50.42  Aligned_cols=27  Identities=7%  Similarity=0.245  Sum_probs=23.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhccc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMIM   62 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~~   62 (171)
                      ++.=.++++|++|+|||||++.+.+..
T Consensus       124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          124 PKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            455679999999999999999999843

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.50  E-value=0.011  Score=44.25  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ....+++.|++|+|||++++.+..
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            455699999999999999999987

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.50  E-value=0.0016  Score=49.41  Aligned_cols=24  Identities=17%  Similarity=0.076  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++-+.+
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            344689999999999999999998

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.50  E-value=0.0015  Score=49.21  Aligned_cols=24  Identities=13%  Similarity=0.141  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++-+.+
T Consensus        44 ~Ge~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           44 PGKVTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            344689999999999999999998

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.019  Score=45.76  Aligned_cols=25  Identities=20%  Similarity=0.182  Sum_probs=22.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.-.|++.|++|+|||++++.+.+
T Consensus       180 ~~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          180 AQPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCCCceEEeCCCCCCHHHHHHHHHH
Confidence            3456799999999999999999998

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.49  E-value=0.0013  Score=51.54  Aligned_cols=23  Identities=17%  Similarity=0.427  Sum_probs=21.7

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-+++++|+.|+|||||++.+.+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999999988

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.48  E-value=0.0012  Score=47.84  Aligned_cols=21  Identities=24%  Similarity=0.260  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.++|+.|+|||||++-+.+
T Consensus        24 ~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999999987

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.48  E-value=0.0014  Score=48.68  Aligned_cols=27  Identities=19%  Similarity=0.172  Sum_probs=23.3

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...+...|+++|++||||||+.+.+..
T Consensus        28 ~~~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           28 SSKQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            345567899999999999999999876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.48  E-value=0.0014  Score=45.61  Aligned_cols=21  Identities=5%  Similarity=0.129  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      +|+++|++||||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999999876

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.47  E-value=0.0012  Score=46.15  Aligned_cols=24  Identities=8%  Similarity=-0.025  Sum_probs=16.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|++.|.+||||||+.+.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.47  E-value=0.0016  Score=45.53  Aligned_cols=24  Identities=17%  Similarity=0.065  Sum_probs=21.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|+++|.+|+||||+.+.+..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            345799999999999999999875

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.47  E-value=0.0015  Score=48.75  Aligned_cols=23  Identities=13%  Similarity=0.185  Sum_probs=20.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .=.++++|+.|+|||||++-+.+
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~G   53 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLG   53 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34688999999999999999998

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.46  E-value=0.0021  Score=47.13  Aligned_cols=37  Identities=16%  Similarity=0.100  Sum_probs=22.9

Q ss_pred             ecccccccCCCCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         24 YGMGMLRHRPQVSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        24 ~~m~~~~~~~~~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +-||+++.--...+..-|++.|.+||||||+++.+..
T Consensus         7 ~~~~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A            7 HHMGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             ------------CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cccccccccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4677766433355677899999999999999999987

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.45  E-value=0.0059  Score=46.95  Aligned_cols=20  Identities=10%  Similarity=0.049  Sum_probs=19.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      +++.|++|+||||+++.+..
T Consensus        61 ~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.45  E-value=0.002  Score=49.64  Aligned_cols=26  Identities=4%  Similarity=0.000  Sum_probs=23.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+..-|.++|+.|||||||++.+.+
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHh
Confidence            45677899999999999999999998

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.44  E-value=0.0016  Score=48.98  Aligned_cols=24  Identities=13%  Similarity=0.144  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++-+.+
T Consensus        32 ~Ge~~~liG~nGsGKSTLl~~i~G   55 (266)
T 2yz2_A           32 EGECLLVAGNTGSGKSTLLQIVAG   55 (266)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            344688999999999999999998

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.44  E-value=0.0019  Score=47.64  Aligned_cols=25  Identities=8%  Similarity=0.108  Sum_probs=22.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+...|.++|+.||||||+++.+.+
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4556799999999999999999987

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.44  E-value=0.002  Score=44.65  Aligned_cols=24  Identities=17%  Similarity=0.116  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-.+++.|++|+|||++++.+..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999987

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=96.42  E-value=0.017  Score=42.06  Aligned_cols=91  Identities=12%  Similarity=0.192  Sum_probs=47.7

Q ss_pred             eEEEEEeCCCCcHHH-HHHHHhccccCceEEEEE----ecC----------Ccc-------chhHHHHHhhhCCCEEEEE
Q psy11510         39 AVVSLLRNKNGGETL-ILKKKKMIMTFRFKLNIW----DVG----------GQK-------SLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        39 ~ki~liG~~~~GKtt-li~~~~~~~~~~~~~~i~----d~~----------g~~-------~~~~~~~~~~~~~~~ii~v   96 (171)
                      .=.++.|+.++|||| |++++.+....+.++.++    |+.          |..       ....+......+.|+|++ 
T Consensus        29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~~~~dvV~I-  107 (219)
T 3e2i_A           29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDLTNVDVIGI-  107 (219)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCCTTCSEEEE-
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHhcCCCEEEE-
Confidence            344679999999999 777766622111222222    211          100       001111111234554443 


Q ss_pred             EeCCChhhHH-HHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         97 VDSADKRRLE-DCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        97 ~d~~~~~s~~-~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                       |  ..+-|. ++.+.+..+..    .++||++.|-..|=..
T Consensus       108 -D--EaQFf~~~~v~~l~~la~----~gi~Vi~~GLd~DF~~  142 (219)
T 3e2i_A          108 -D--EVQFFDDEIVSIVEKLSA----DGHRVIVAGLDMDFRG  142 (219)
T ss_dssp             -C--CGGGSCTHHHHHHHHHHH----TTCEEEEEEESBCTTS
T ss_pred             -e--chhcCCHHHHHHHHHHHH----CCCEEEEeeccccccc
Confidence             3  444444 35555666642    5899999999998755

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.42  E-value=0.0024  Score=45.66  Aligned_cols=25  Identities=12%  Similarity=0.128  Sum_probs=22.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+...|.++|+.||||||+++.+..
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999987

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.41  E-value=0.025  Score=45.47  Aligned_cols=25  Identities=24%  Similarity=0.150  Sum_probs=22.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.--|++.|++|+|||++++.+.+
T Consensus       214 ~~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          214 KPPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             CCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             CCCCCCceECCCCchHHHHHHHHHH
Confidence            4567899999999999999999998

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.41  E-value=0.0027  Score=44.47  Aligned_cols=23  Identities=17%  Similarity=0.063  Sum_probs=20.4

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|++.|.+||||||+.+.+..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.41  E-value=0.0019  Score=48.50  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=21.3

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKMI   61 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~~   61 (171)
                      .=.++++|+.|+|||||++-+.+.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            346899999999999999999984

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.41  E-value=0.0019  Score=46.96  Aligned_cols=22  Identities=9%  Similarity=-0.014  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.|++.|.+||||||+.+.+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999876

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.39  E-value=0.01  Score=45.50  Aligned_cols=25  Identities=12%  Similarity=0.133  Sum_probs=22.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+...+++.|++|+|||++++.+..
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            3456899999999999999999987

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.38  E-value=0.0023  Score=48.76  Aligned_cols=26  Identities=4%  Similarity=-0.056  Sum_probs=23.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+...|.++|++|||||||++.+..
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999999999999887

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.38  E-value=0.0017  Score=49.64  Aligned_cols=23  Identities=9%  Similarity=0.081  Sum_probs=20.9

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-.++++|++|||||||++.+.+
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHST
T ss_pred             CCeEEEECCCCCcHHHHHHHhcc
Confidence            34689999999999999999998

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.38  E-value=0.002  Score=45.54  Aligned_cols=23  Identities=9%  Similarity=0.130  Sum_probs=20.7

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|++.|.+||||||+.+.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999876

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.37  E-value=0.015  Score=44.78  Aligned_cols=21  Identities=10%  Similarity=0.012  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      ++++.|++|+||||+++.+..
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999999988

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.36  E-value=0.0024  Score=46.74  Aligned_cols=24  Identities=17%  Similarity=0.032  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|+++|.+||||||+.+.+..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.36  E-value=0.00088  Score=48.03  Aligned_cols=21  Identities=10%  Similarity=0.224  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -|++.|.+||||||+++.+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999976

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.35  E-value=0.002  Score=50.62  Aligned_cols=24  Identities=13%  Similarity=0.147  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-++++|+.|||||||++-+.+
T Consensus        29 ~Ge~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A           29 PGEILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCchHHHHHHHHhc
Confidence            334578999999999999999998

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.02  Score=46.35  Aligned_cols=25  Identities=16%  Similarity=0.081  Sum_probs=22.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.--|++.|++|+|||+|++.+.+
T Consensus       241 ~pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          241 DPPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             CCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHh
Confidence            4667899999999999999999998

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.34  E-value=0.0024  Score=47.49  Aligned_cols=23  Identities=13%  Similarity=0.140  Sum_probs=21.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKK   59 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~   59 (171)
                      +...|.++|+.||||||+.+.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999998

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.33  E-value=0.0025  Score=49.29  Aligned_cols=26  Identities=8%  Similarity=0.023  Sum_probs=23.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+.+-|.++|++||||||+++.+..
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~  114 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKA  114 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            45678899999999999999999987

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.32  E-value=0.0027  Score=44.35  Aligned_cols=24  Identities=17%  Similarity=0.039  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|+++|.+||||||+.+.+..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999976

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.32  E-value=0.002  Score=49.31  Aligned_cols=22  Identities=18%  Similarity=0.151  Sum_probs=20.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHh
Q psy11510         38 VAVVSLLRNKNGGETLILKKKK   59 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~   59 (171)
                      .-.++++|++|||||||++.+.
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999999998

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.32  E-value=0.0024  Score=48.71  Aligned_cols=24  Identities=13%  Similarity=0.116  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++-+.+
T Consensus        63 ~Ge~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           63 RGQLLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            334689999999999999999998

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.31  E-value=0.00087  Score=51.57  Aligned_cols=24  Identities=8%  Similarity=0.059  Sum_probs=21.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++|++|||||||++.+.+
T Consensus       172 ~G~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          172 QDKTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcc
Confidence            445899999999999999999998

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.31  E-value=0.0027  Score=45.75  Aligned_cols=23  Identities=13%  Similarity=0.115  Sum_probs=20.9

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.|++.|.+||||||+.+.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999875

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.31  E-value=0.0015  Score=50.17  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=22.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.=.++++|+.|||||||++-+.+
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHc
Confidence            3455799999999999999999988

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.31  E-value=0.0019  Score=50.68  Aligned_cols=22  Identities=14%  Similarity=0.111  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.++++|+.||||||+++.+.+
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3899999999999999999987

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=96.30  E-value=0.037  Score=39.40  Aligned_cols=22  Identities=14%  Similarity=0.070  Sum_probs=18.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .=.++.|+.|+||||.+-++..
T Consensus         9 ~i~v~~G~mgsGKTT~ll~~a~   30 (191)
T 1xx6_A            9 WVEVIVGPMYSGKSEELIRRIR   30 (191)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHH
Confidence            4578899999999988777765

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=96.28  E-value=0.015  Score=42.27  Aligned_cols=65  Identities=14%  Similarity=0.070  Sum_probs=37.7

Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                      .+.+.++|+|+....  .....+..+|.++++++.+ ..++..+..... ++...  .-..+.+|.|+.+-
T Consensus       131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~-~~~~~--~~~~~~~v~N~~~~  195 (254)
T 3kjh_A          131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEK-LAGDL--GIKKVRYVINKVRN  195 (254)
T ss_dssp             CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHH-HHHHH--TCSCEEEEEEEECC
T ss_pred             CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHH-HHHHc--CCccEEEEEeCCCC
Confidence            345566666653322  2233456789999999864 445555544433 33332  12457788999883

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.27  E-value=0.003  Score=48.37  Aligned_cols=41  Identities=7%  Similarity=0.076  Sum_probs=29.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhcc-c--cCceEEEEEecCCc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMI-M--TFRFKLNIWDVGGQ   76 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~-~--~~~~~~~i~d~~g~   76 (171)
                      .+...|.++|+.|||||||++.+.+. .  ...-.+.+++..|.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            45678999999999999999999883 2  22334556665553

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.27  E-value=0.01  Score=47.78  Aligned_cols=23  Identities=13%  Similarity=0.056  Sum_probs=21.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-.+++.|++|+|||+|++.+.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45699999999999999999988

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.27  E-value=0.0028  Score=47.31  Aligned_cols=23  Identities=13%  Similarity=0.114  Sum_probs=20.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|+++|.+||||||+.+.+..
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            35799999999999999999875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.27  E-value=0.0022  Score=47.40  Aligned_cols=20  Identities=20%  Similarity=0.142  Sum_probs=19.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      ++++|++|+|||||++.+.+
T Consensus        52 ~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999988

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=96.26  E-value=0.058  Score=39.89  Aligned_cols=64  Identities=8%  Similarity=0.007  Sum_probs=39.0

Q ss_pred             eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510         66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQD  134 (171)
Q Consensus        66 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  134 (171)
                      +.+.++|+|+..  .......+..+|.+++++..+. .+...+...+..+ +.. ..+.++.+|.|+.+
T Consensus       145 yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l-~~~-~~~~~~~vv~N~~~  208 (267)
T 3k9g_A          145 YDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFV-RKL-NLFLPIFLIITRFK  208 (267)
T ss_dssp             CSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHH-HTT-TCCCCEEEEEEEEC
T ss_pred             CCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHH-HHH-hccCCEEEEEeccc
Confidence            345667776643  2233444567999999998644 4555555544444 222 23567889999984

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.25  E-value=0.01  Score=46.35  Aligned_cols=23  Identities=13%  Similarity=0.187  Sum_probs=20.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .--+++.|++|+|||||+.++..
T Consensus        61 G~iv~I~G~pGsGKTtLal~la~   83 (349)
T 2zr9_A           61 GRVIEIYGPESSGKTTVALHAVA   83 (349)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999999885

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.24  E-value=0.0026  Score=46.51  Aligned_cols=27  Identities=19%  Similarity=0.090  Sum_probs=23.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMI   61 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~   61 (171)
                      ..+..-|++.|+.||||||+++.+.+.
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            455678999999999999999999886

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.23  E-value=0.0022  Score=48.33  Aligned_cols=20  Identities=30%  Similarity=0.242  Sum_probs=19.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      ++++|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999999988

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.23  E-value=0.0097  Score=43.19  Aligned_cols=39  Identities=10%  Similarity=0.027  Sum_probs=27.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG   75 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g   75 (171)
                      +..-|++-|.+||||||+++.+.. .....+.+....-||
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~   44 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG   44 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC
Confidence            456799999999999999999987 333334444444444

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.22  E-value=0.0031  Score=44.24  Aligned_cols=34  Identities=15%  Similarity=0.211  Sum_probs=24.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEe
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWD   72 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d   72 (171)
                      ..+.++|.+|+||||++.++.. ......++.++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            4688999999999999999987 333333444443

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.22  E-value=0.0024  Score=50.06  Aligned_cols=23  Identities=30%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .=-++++|+.|||||||++-+.+
T Consensus        41 Ge~~~llGpnGsGKSTLLr~iaG   63 (355)
T 1z47_A           41 GEMVGLLGPSGSGKTTILRLIAG   63 (355)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            34578999999999999999998

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.22  E-value=0.12  Score=37.03  Aligned_cols=91  Identities=8%  Similarity=0.025  Sum_probs=57.7

Q ss_pred             EEEE-eCCCCcHHHHHHHHhc-cc--------------------------------------cCceEEEEEecCCc-cch
Q psy11510         41 VSLL-RNKNGGETLILKKKKM-IM--------------------------------------TFRFKLNIWDVGGQ-KSL   79 (171)
Q Consensus        41 i~li-G~~~~GKttli~~~~~-~~--------------------------------------~~~~~~~i~d~~g~-~~~   79 (171)
                      |++. +.+|+||||+.-.+.. ..                                      ...+.+.+.|+|+. ...
T Consensus         3 I~v~s~KGGvGKTT~a~~LA~~la~~g~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~~~   82 (209)
T 3cwq_A            3 ITVASFKGGVGKTTTAVHLSAYLALQGETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPEDE   82 (209)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCSSS
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHhcCCEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcCcH
Confidence            4454 6678999999888775 00                                      02345667777775 322


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                        .....+..+|.+++++..+ ..++..+...+..+.+.   .+.++.+|.|+.|...
T Consensus        83 --~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~---~~~~~~vv~N~~~~~~  134 (209)
T 3cwq_A           83 --DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL---GNNRFRILLTIIPPYP  134 (209)
T ss_dssp             --HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT---CSSSEEEEECSBCCTT
T ss_pred             --HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc---cCCCEEEEEEecCCcc
Confidence              2344567799999988854 44556555555554321   1567889999998754

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.22  E-value=0.0025  Score=47.45  Aligned_cols=21  Identities=10%  Similarity=0.015  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -|+++|++||||||+.+.+..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999875

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.21  E-value=0.0026  Score=43.89  Aligned_cols=21  Identities=10%  Similarity=0.115  Sum_probs=19.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .|++.|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999876

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=96.21  E-value=0.0069  Score=48.93  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=22.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKK   59 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~   59 (171)
                      ..+..-|.|+|+.++|||||++++.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~ll   88 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFML   88 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHh
Confidence            4578889999999999999999996

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.21  E-value=0.0026  Score=49.95  Aligned_cols=24  Identities=17%  Similarity=0.200  Sum_probs=21.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++|+.|+|||||++.+.+
T Consensus       174 ~G~~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          174 LERVIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             TTCCEEEEESSSSCHHHHHHHHHT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHh
Confidence            345899999999999999999998

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.20  E-value=0.0026  Score=50.01  Aligned_cols=24  Identities=25%  Similarity=0.155  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-++++|+.|||||||++-+.+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           28 DGEFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHC
Confidence            334578999999999999999998

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.19  E-value=0.0026  Score=50.35  Aligned_cols=24  Identities=13%  Similarity=0.149  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-++++|+.|||||||++-+.+
T Consensus        28 ~Ge~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           28 EGEFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCchHHHHHHHHHc
Confidence            334578999999999999999999

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.19  E-value=0.0026  Score=50.01  Aligned_cols=24  Identities=17%  Similarity=0.217  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-++++|+.|||||||++-+.+
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           28 DGEFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCchHHHHHHHHhc
Confidence            334678999999999999999998

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.19  E-value=0.0025  Score=48.85  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=22.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.--++++|+.||||||+++.+.+
T Consensus        98 ~~g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A           98 RKPAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3456789999999999999999998

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.18  E-value=0.0032  Score=46.63  Aligned_cols=26  Identities=8%  Similarity=0.070  Sum_probs=21.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+.+.|.+.|.+||||||+.+.+..
T Consensus        19 ~~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           19 GGEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999876

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.18  E-value=0.0038  Score=47.21  Aligned_cols=26  Identities=19%  Similarity=0.233  Sum_probs=22.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.+.+.|++.|.+||||||+.+.+..
T Consensus        72 ~~~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           72 PSGLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CTTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999974

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.16  E-value=0.0027  Score=50.07  Aligned_cols=24  Identities=4%  Similarity=0.122  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++|+.||||||+++.+.+
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            445799999999999999999998

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.15  E-value=0.0028  Score=49.87  Aligned_cols=24  Identities=4%  Similarity=0.256  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-+.++|+.|||||||++-+.+
T Consensus        53 ~Gei~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           53 AGQIYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCchHHHHHHHHhc
Confidence            344678999999999999999998

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.15  E-value=0.0024  Score=44.23  Aligned_cols=24  Identities=21%  Similarity=0.188  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-.+++.|++|+|||++++.+..
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999999987

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.14  E-value=0.0028  Score=50.03  Aligned_cols=23  Identities=22%  Similarity=0.131  Sum_probs=20.7

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .=-++++|+.|||||||++-+.+
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCcHHHHHHHHHHc
Confidence            34578999999999999999998

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.14  E-value=0.0029  Score=49.95  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-++++|+.|||||||++-+.+
T Consensus        36 ~Ge~~~llGpnGsGKSTLLr~iaG   59 (372)
T 1v43_A           36 DGEFLVLLGPSGCGKTTTLRMIAG   59 (372)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHc
Confidence            344678999999999999999998

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.12  E-value=0.0031  Score=45.47  Aligned_cols=22  Identities=14%  Similarity=0.119  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      --++++|++|+|||||++.+..
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4578999999999999999986

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.10  E-value=0.007  Score=46.88  Aligned_cols=21  Identities=19%  Similarity=0.227  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -+++.|++|+|||+|..++..
T Consensus       125 viLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          125 MVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             EEEEECSCSSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            368999999999999999976

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.09  E-value=0.0032  Score=44.03  Aligned_cols=21  Identities=14%  Similarity=0.137  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .|+++|.+||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            499999999999999998875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.09  E-value=0.0037  Score=43.67  Aligned_cols=21  Identities=10%  Similarity=0.153  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -.+++|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999876

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.08  E-value=0.0037  Score=46.15  Aligned_cols=24  Identities=13%  Similarity=0.093  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.+.|++.|++||||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999875

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=96.06  E-value=0.061  Score=39.39  Aligned_cols=68  Identities=13%  Similarity=0.066  Sum_probs=42.7

Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccc-----cCCCeEEEEEeCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEER-----LAGATLLVFANKQDI  135 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-----~~~~p~ivv~nK~Dl  135 (171)
                      .+.+.++|+|+...  ......+..+|.+++|++. +..++..+...+..+.....     .+...+.+|.|+.|.
T Consensus       113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            45567788877432  2445556789999999885 45556666555555422110     023578889999874

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.06  E-value=0.0032  Score=47.28  Aligned_cols=20  Identities=20%  Similarity=0.142  Sum_probs=19.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      ++++|++|+|||||++.+.+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHHH
Confidence            99999999999999999988

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.06  E-value=0.0063  Score=50.01  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...++++|+.||||||+++.+.+
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            344599999999999999999998

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.06  E-value=0.0039  Score=42.99  Aligned_cols=22  Identities=9%  Similarity=0.181  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.|++.|.+||||||+.+.+..
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999876

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.06  E-value=0.0044  Score=44.51  Aligned_cols=25  Identities=8%  Similarity=0.024  Sum_probs=21.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+...|+++|.+|+||||+.+.+..
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3456799999999999999999876

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.05  E-value=0.12  Score=39.57  Aligned_cols=23  Identities=9%  Similarity=0.063  Sum_probs=18.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .--|++.|-.||||||..-.+.-
T Consensus        48 aKVIAIaGKGGVGKTTtavNLA~   70 (314)
T 3fwy_A           48 AKVFAVYGKGGIGKSTTSSNLSA   70 (314)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCccCHHHHHHHHHH
Confidence            34567779999999998877665

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.04  E-value=0.0024  Score=49.92  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-++++|+.|||||||++-+.+
T Consensus        25 ~Ge~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           25 SGEYFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCccHHHHHHHHHc
Confidence            334688999999999999999998

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.04  E-value=0.016  Score=45.27  Aligned_cols=25  Identities=12%  Similarity=0.133  Sum_probs=22.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+...|++.|++|+|||++++.+..
T Consensus        82 ~~~~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           82 KPTSGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHH
Confidence            3445799999999999999999988

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.02  E-value=0.0036  Score=49.68  Aligned_cols=24  Identities=21%  Similarity=0.183  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.+.++|+.|||||||++-+.+
T Consensus        46 ~Ge~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           46 PGQRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhC
Confidence            444689999999999999999998

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.01  E-value=0.0044  Score=45.83  Aligned_cols=23  Identities=22%  Similarity=0.146  Sum_probs=20.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...++++|++|+||||+++.+.+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHH
Confidence            34599999999999999999987

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.00  E-value=0.0033  Score=50.41  Aligned_cols=24  Identities=8%  Similarity=0.084  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--++++|+.||||||+++.+.+
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHh
Confidence            334689999999999999999988

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.96  E-value=0.0035  Score=48.48  Aligned_cols=22  Identities=18%  Similarity=0.010  Sum_probs=20.4

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.++++|++|+|||||++.+.+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4589999999999999999998

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=95.96  E-value=0.0097  Score=45.12  Aligned_cols=21  Identities=10%  Similarity=-0.102  Sum_probs=19.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .+++.|++|+|||++++.+..
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~   68 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAR   68 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            499999999999999999987

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.96  E-value=0.039  Score=42.94  Aligned_cols=25  Identities=24%  Similarity=0.112  Sum_probs=22.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .....+++.|++|+|||++++.+..
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999987

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.95  E-value=0.017  Score=44.09  Aligned_cols=91  Identities=15%  Similarity=0.202  Sum_probs=45.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhccccCceEEEEEecCC--ccchhHHHHHhhhC----CCEEEEEEeCCChhhHHHHHHHHHH
Q psy11510         41 VSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGG--QKSLRSYWRNYFES----TDGLIWVVDSADKRRLEDCARELHE  114 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~~~~~~~~~~i~d~~g--~~~~~~~~~~~~~~----~~~ii~v~d~~~~~s~~~~~~~~~~  114 (171)
                      +++.|++|+|||++++.+...-  +..+.-++.+.  ....+.....+...    ...-++++|-.+.-+-......+..
T Consensus        51 ~L~~G~~G~GKT~la~~la~~l--~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~  128 (324)
T 3u61_B           51 ILHSPSPGTGKTTVAKALCHDV--NADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRS  128 (324)
T ss_dssp             EEECSSTTSSHHHHHHHHHHHT--TEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHH
T ss_pred             EEeeCcCCCCHHHHHHHHHHHh--CCCEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHH
Confidence            5556669999999999998721  12222223221  11222222222221    2455666664432220223333444


Q ss_pred             HHhccccCCCeEEEEEeCCC
Q psy11510        115 LLQEERLAGATLLVFANKQD  134 (171)
Q Consensus       115 i~~~~~~~~~p~ivv~nK~D  134 (171)
                      +++.. ..+.++|+..|..+
T Consensus       129 ~le~~-~~~~~iI~~~n~~~  147 (324)
T 3u61_B          129 FMEAY-SSNCSIIITANNID  147 (324)
T ss_dssp             HHHHH-GGGCEEEEEESSGG
T ss_pred             HHHhC-CCCcEEEEEeCCcc
Confidence            44432 24678888887654

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.93  E-value=0.004  Score=47.09  Aligned_cols=24  Identities=8%  Similarity=0.263  Sum_probs=21.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-++++|++|+|||||+..+..
T Consensus        34 ~G~~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           34 GGEVIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             TTCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            334688999999999999999988

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.93  E-value=0.0064  Score=46.02  Aligned_cols=26  Identities=19%  Similarity=0.107  Sum_probs=22.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ......+++.|++|+|||++++.+..
T Consensus        64 ~~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           64 ETPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             SCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHH
Confidence            44566899999999999999997776

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.92  E-value=0.047  Score=41.76  Aligned_cols=24  Identities=8%  Similarity=-0.006  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.+++.|++|+|||++++.+..
T Consensus        54 ~~~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           54 CLDHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            345699999999999999999987

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.92  E-value=0.023  Score=44.66  Aligned_cols=21  Identities=14%  Similarity=0.264  Sum_probs=18.7

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -+++.|++|+|||+|..++..
T Consensus        76 li~I~G~pGsGKTtlal~la~   96 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVA   96 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHH
Confidence            477799999999999998876

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.92  E-value=0.028  Score=44.25  Aligned_cols=24  Identities=17%  Similarity=0.196  Sum_probs=21.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ....+++.|++|+|||++++.+..
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999987

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.91  E-value=0.031  Score=45.81  Aligned_cols=23  Identities=13%  Similarity=-0.025  Sum_probs=21.1

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-.+++.|++|+|||++++.+..
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~   99 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQ   99 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999987

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.91  E-value=0.0047  Score=43.88  Aligned_cols=22  Identities=18%  Similarity=0.057  Sum_probs=20.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.+++.|++|+|||+|++.+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999999988

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=95.90  E-value=0.0042  Score=44.48  Aligned_cols=24  Identities=8%  Similarity=0.108  Sum_probs=20.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--++++|++|+|||||+..+..
T Consensus        19 ~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           19 PGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            344689999999999999999976

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.90  E-value=0.0042  Score=44.59  Aligned_cols=22  Identities=14%  Similarity=0.048  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      --+++.|++|+|||++++.+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999987

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.90  E-value=0.034  Score=41.11  Aligned_cols=37  Identities=11%  Similarity=0.134  Sum_probs=26.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecC
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVG   74 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~   74 (171)
                      ...+++.|++|+|||++++.+.. .......+...+.+
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~   66 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCA   66 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGG
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecC
Confidence            46799999999999999999987 33233334444443

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.88  E-value=0.0073  Score=49.92  Aligned_cols=30  Identities=23%  Similarity=0.274  Sum_probs=25.6

Q ss_pred             cCCCCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         31 HRPQVSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        31 ~~~~~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++..++.=-+.++|+.|+|||||++-+.+
T Consensus        18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~G   47 (538)
T 3ozx_A           18 GLPTPKNNTILGVLGKNGVGKTTVLKILAG   47 (538)
T ss_dssp             CCCCCCTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCCCCCCCEEEEECCCCCcHHHHHHHHhc
Confidence            355566667789999999999999999998

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=95.88  E-value=0.0044  Score=45.10  Aligned_cols=24  Identities=13%  Similarity=0.185  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--++++|++|+|||||+..+..
T Consensus        23 ~G~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           23 TGSITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            344689999999999999999987

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.88  E-value=0.016  Score=45.05  Aligned_cols=23  Identities=13%  Similarity=0.132  Sum_probs=19.7

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .==+++.|.+|+|||||+..+..
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia~   68 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMVL   68 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHH
Confidence            34588999999999999998865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.056  Score=41.66  Aligned_cols=26  Identities=4%  Similarity=0.003  Sum_probs=23.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+.-.+++.|++|+|||++++.+..
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~   67 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMD   67 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            34667889999999999999999988

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=95.85  E-value=0.0024  Score=50.02  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus        30 ~Ge~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           30 NGERFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            334678999999999999999998

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.84  E-value=0.0043  Score=46.23  Aligned_cols=23  Identities=17%  Similarity=0.033  Sum_probs=20.7

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-.|+++|++||||||+.+.+..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.82  E-value=0.0052  Score=55.95  Aligned_cols=25  Identities=8%  Similarity=0.121  Sum_probs=22.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.=+|.++|++|||||||++-+.+
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTT
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhc
Confidence            3456899999999999999999998

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=95.82  E-value=0.01  Score=44.87  Aligned_cols=21  Identities=10%  Similarity=-0.077  Sum_probs=19.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .+++.|++|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~   60 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALAR   60 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHH
T ss_pred             eEEEECcCCcCHHHHHHHHHH
Confidence            399999999999999999987

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.81  E-value=0.0038  Score=48.05  Aligned_cols=21  Identities=24%  Similarity=0.183  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -++++|..||||||+++.+.+
T Consensus         6 v~~i~G~~GaGKTTll~~l~~   26 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILN   26 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHh
Confidence            468999999999999999995

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.81  E-value=0.01  Score=45.96  Aligned_cols=22  Identities=14%  Similarity=0.101  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..|+++|++||||||+...+..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999886

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.79  E-value=0.0068  Score=43.30  Aligned_cols=25  Identities=12%  Similarity=0.139  Sum_probs=22.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..++.|.+.|..||||||+.+.+..
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3578899999999999999999876

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.79  E-value=0.005  Score=46.57  Aligned_cols=22  Identities=5%  Similarity=0.084  Sum_probs=19.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..|++.|.+||||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.78  E-value=0.0061  Score=47.85  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=22.3

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.-.++++|+.||||||++..+.+
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHh
Confidence            3556799999999999999999988

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.78  E-value=0.03  Score=45.06  Aligned_cols=24  Identities=13%  Similarity=0.105  Sum_probs=21.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...+++.|++|+|||++++.+..
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999987

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.78  E-value=0.0057  Score=47.80  Aligned_cols=28  Identities=7%  Similarity=-0.028  Sum_probs=23.8

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhccc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMIM   62 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~~   62 (171)
                      -.+.=++.++|+.|+|||||++.+.+..
T Consensus        68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           68 CGIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3455689999999999999999999933

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=95.77  E-value=0.0075  Score=43.99  Aligned_cols=21  Identities=19%  Similarity=0.172  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -|+++|++||||+|..+++..
T Consensus        31 iI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366789999999999999876

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.77  E-value=0.0046  Score=50.17  Aligned_cols=24  Identities=13%  Similarity=0.105  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus       137 ~Ge~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          137 EGPRVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             SCCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            445799999999999999999998

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.77  E-value=0.008  Score=45.63  Aligned_cols=26  Identities=8%  Similarity=0.101  Sum_probs=22.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+...-+++.|++|+|||++++.+..
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34556788889999999999999988

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.76  E-value=0.037  Score=40.47  Aligned_cols=24  Identities=13%  Similarity=-0.072  Sum_probs=19.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +..-+++.|+.|+||||++.++..
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~   34 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLH   34 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHH
Confidence            345677889999999998887776

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.76  E-value=0.037  Score=40.18  Aligned_cols=24  Identities=17%  Similarity=0.076  Sum_probs=19.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--+++.|++|+|||+|..++..
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            344688999999999999988764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.72  E-value=0.068  Score=42.59  Aligned_cols=25  Identities=16%  Similarity=0.263  Sum_probs=21.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ....-|+++|.+||||||+.+++..
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999876

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.68  E-value=0.05  Score=42.61  Aligned_cols=39  Identities=10%  Similarity=0.069  Sum_probs=27.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQ   76 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~   76 (171)
                      .--++++|++|+|||||+..+.. .....-.+.++|+...
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s  100 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA  100 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            34578999999999999999987 2222233455676653

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.67  E-value=0.0066  Score=45.77  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=21.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...+++.|++|+|||++++.+..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            456899999999999999999987

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.67  E-value=0.029  Score=45.63  Aligned_cols=22  Identities=18%  Similarity=0.191  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..++++|++|+|||++++.+.+
T Consensus        50 ~gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3499999999999999999988

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.65  E-value=0.02  Score=44.06  Aligned_cols=23  Identities=13%  Similarity=0.180  Sum_probs=20.3

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-|+++|++|||||||...+..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            34588999999999999999986

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.64  E-value=0.061  Score=40.76  Aligned_cols=24  Identities=13%  Similarity=0.055  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ....+++.|++|+|||++++.+..
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999987

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.61  E-value=0.0082  Score=43.91  Aligned_cols=26  Identities=8%  Similarity=0.060  Sum_probs=22.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+...|.++|..|+||||+.+.+..
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998875

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.59  E-value=0.011  Score=46.58  Aligned_cols=39  Identities=13%  Similarity=0.074  Sum_probs=30.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG   75 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g   75 (171)
                      ...+++++|++|+|||++++.+.. ....+..+.++|..|
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~   73 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPER   73 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            567899999999999999999987 223344566778765

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.55  E-value=0.0076  Score=45.24  Aligned_cols=24  Identities=13%  Similarity=0.177  Sum_probs=20.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--++++|++|+|||||+..+..
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH
Confidence            344688999999999999999986

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.54  E-value=0.0057  Score=45.52  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=22.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++...|++.|..||||||+++.+..
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999887

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.53  E-value=0.0077  Score=48.53  Aligned_cols=26  Identities=15%  Similarity=0.201  Sum_probs=22.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.+.=++.++|+.|+|||||++.+.+
T Consensus       154 i~~Gq~~~IvG~sGsGKSTLl~~Iag  179 (438)
T 2dpy_A          154 VGRGQRMGLFAGSGVGKSVLLGMMAR  179 (438)
T ss_dssp             CBTTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhc
Confidence            44556899999999999999999998

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.53  E-value=0.0079  Score=50.08  Aligned_cols=24  Identities=17%  Similarity=0.163  Sum_probs=21.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|+|||||++-+.+
T Consensus       368 ~G~~~~ivG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          368 AGKTVALVGRSGSGKSTIASLITR  391 (582)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhh
Confidence            445799999999999999999998

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.52  E-value=0.013  Score=44.23  Aligned_cols=20  Identities=10%  Similarity=-0.071  Sum_probs=19.2

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      +++.|++|+|||++++.+..
T Consensus        45 ~ll~G~~G~GKt~la~~l~~   64 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAH   64 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHH
Confidence            99999999999999999987

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.51  E-value=0.0074  Score=46.72  Aligned_cols=25  Identities=12%  Similarity=0.054  Sum_probs=21.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...-.+++.|++|+||||+++.+..
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3445799999999999999999987

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.51  E-value=0.0086  Score=40.86  Aligned_cols=20  Identities=10%  Similarity=0.237  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      .+++|+.|+||||++..+..
T Consensus        26 ~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999886

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.50  E-value=0.0084  Score=45.59  Aligned_cols=24  Identities=21%  Similarity=0.108  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.+++.|++|+|||++++.+..
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCcCHHHHHHHHHH
Confidence            455799999999999999999988

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.48  E-value=0.015  Score=47.82  Aligned_cols=38  Identities=5%  Similarity=0.025  Sum_probs=31.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-----cccCceEEEEEecCC
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-----IMTFRFKLNIWDVGG   75 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-----~~~~~~~~~i~d~~g   75 (171)
                      .-++++.|.+|+|||++++.+..     ...+.+.+.+.|..|
T Consensus       167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~  209 (512)
T 2ius_A          167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM  209 (512)
T ss_dssp             SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence            46899999999999999999876     334578888888776

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.48  E-value=0.024  Score=41.13  Aligned_cols=23  Identities=9%  Similarity=-0.035  Sum_probs=20.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-|++-|.+||||||.++.+..
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~   25 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVE   25 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34689999999999999999987

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.47  E-value=0.029  Score=44.73  Aligned_cols=21  Identities=10%  Similarity=0.131  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -|+|.|++|||||||...+..
T Consensus         4 ~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             EEEEECcchhhHHHHHHHHHH
Confidence            478999999999999999986

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.47  E-value=0.011  Score=43.42  Aligned_cols=23  Identities=17%  Similarity=0.078  Sum_probs=20.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...|++.|..||||||+++.+..
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999999886

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.42  E-value=0.15  Score=39.03  Aligned_cols=39  Identities=13%  Similarity=0.112  Sum_probs=28.9

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-cccC------ceEEEEEecCCc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-IMTF------RFKLNIWDVGGQ   76 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-~~~~------~~~~~i~d~~g~   76 (171)
                      .--+++.|++|+|||+|+.++.. ....      .-.+.++|+.+.
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~  152 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT  152 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence            34689999999999999999986 1111      345667787764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.41  E-value=0.05  Score=47.05  Aligned_cols=26  Identities=23%  Similarity=0.179  Sum_probs=23.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+...|++.|++|+|||+|++.+..
T Consensus       235 ~~~p~GILL~GPPGTGKT~LAraiA~  260 (806)
T 3cf2_A          235 VKPPRGILLYGPPGTGKTLIARAVAN  260 (806)
T ss_dssp             CCCCCEEEEECCTTSCHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-08
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-07
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-07
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	6e-07
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	1e-06
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-06
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-05
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	7e-05
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-04
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-04
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	0.001

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 2e-08
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 3/98 (3%)

Query: 56  KKKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR-LEDCARELHE 114
             K           I   G +         +  S   +++VVDSA  +R ++D A  L++
Sbjct: 38  IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQ 97

Query: 115 LLQEERLAGAT--LLVFANKQDIEGALTPEDIKNVSEK 150
           +L +      +  LL+  NKQDI  A + + I+   EK
Sbjct: 98  VLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK 135

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 17/52 (32%), Positives = 24/52 (46%)

Query: 57  KKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC 108
           K   I   + KL IWD  GQ+  R+    Y+    G+I V D  D+R   + 
Sbjct: 42  KTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNI 93

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (107), Expect = 3e-07
 Identities = 13/69 (18%), Positives = 29/69 (42%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           R KL IWD  GQ+  R+    Y+    G++ V D  +++  ++    +  + +       
Sbjct: 54  RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVE 113

Query: 125 TLLVFANKQ 133
            +++     
Sbjct: 114 KMILGNKCD 122

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (107), Expect = 6e-07
 Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 59  KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA----------DKRRLEDC 108
                 +   +++DVGGQ+  R  W   F     +I+VV S+             RL++ 
Sbjct: 40  TKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA 99

Query: 109 ARELHELLQEERLAGATLLVFANKQD 134
                 +     L   ++++F NKQD
Sbjct: 100 LNLFKSIWNNRWLRTISVILFLNKQD 125

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 57  KKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELH 113
           K   +   + KL IWD  GQ+  R+   +Y+    G+I V D   +         L+
Sbjct: 47  KTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLN 103

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 20/57 (35%)

Query: 57  KKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELH 113
           K       R KL IWD  GQ+  R+    Y+    G I + D  ++           
Sbjct: 45  KTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWST 101

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 23/99 (23%), Positives = 37/99 (37%)

Query: 57  KKKMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELL 116
           K   +     KL IWD  GQ+  R+   +Y+  + G+I V D  D+         L E+ 
Sbjct: 46  KTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID 105

Query: 117 QEERLAGATLLVFANKQDIEGALTPEDIKNVSEKATKVK 155
           +        LLV       +  +   D+      A K+ 
Sbjct: 106 RYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP 144

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 5e-05
 Identities = 38/86 (44%), Positives = 54/86 (62%)

Query: 59  KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQE 118
           + +        +WDVGGQ  +R  WR+YF++T GLI+VVDS D+ R+ +   EL  +L E
Sbjct: 37  ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAE 96

Query: 119 ERLAGATLLVFANKQDIEGALTPEDI 144
           + L  A LLVFANKQD+  A+   +I
Sbjct: 97  DELRDAVLLVFANKQDLPNAMNAAEI 122

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 7e-05
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 1/92 (1%)

Query: 60  MIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEE 119
            +   + KL +WD  GQ+  RS    Y+     L+ + D  +K   ++    L E+ +  
Sbjct: 50  DVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA 109

Query: 120 RLAGATLLVFANKQDI-EGALTPEDIKNVSEK 150
           +   A +L+        E  +  ED + ++++
Sbjct: 110 QHDVALMLLGNKVDSAHERVVKREDGEKLAKE 141

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDC 108
             KL IWD  GQ+  RS  R+Y+    G + V D   +      
Sbjct: 53  YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNAL 96

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 20/70 (28%), Positives = 29/70 (41%)

Query: 65  RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGA 124
           + KL IWD  GQ+  RS  ++Y+ S + LI   D   +         L E+ Q       
Sbjct: 53  KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI 112

Query: 125 TLLVFANKQD 134
           T+LV      
Sbjct: 113 TVLVGNKIDL 122

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 59 KMIMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 98
               F+  L +WD  GQ+  RS    +F    G + + D
Sbjct: 57 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFD 96

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.98
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.97
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.97
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.97
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.96
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.96
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.96
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.96
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.96
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.91
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.87
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.86
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.84
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.84
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.83
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.82
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.82
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.82
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.78
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.78
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.76
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.75
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.75
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.74
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.74
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.72
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.65
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.63
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.58
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.54
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.54
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.52
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.49
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.49
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.48
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.44
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.44
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.32
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.31
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.29
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.19
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.13
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.92
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.87
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.59
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.47
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.38
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.23
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.22
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.18
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.14
d1okkd2	207	GTPase domain of the signal recognition particle r	98.12
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.07
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.05
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.93
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.82
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	97.73
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.72
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	97.7
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.69
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.67
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.65
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.55
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.52
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.49
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.49
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.48
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.46
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.42
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.41
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.4
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.4
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.38
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	97.38
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.38
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.34
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.29
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.29
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.28
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.28
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.27
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.26
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.25
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.19
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.13
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.11
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.09
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.09
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.07
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.04
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.02
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.01
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.01
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.0
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.99
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.98
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.98
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.98
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	96.98
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.98
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.97
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.95
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.94
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.94
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.84
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.84
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.83
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.83
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.83
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.8
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.78
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.78
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.77
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.77
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.76
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.75
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.75
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.72
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	96.72
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.72
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.71
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.69
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.69
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.66
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.64
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.63
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.62
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.57
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.55
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.54
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.53
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.51
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.51
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.51
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.5
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.4
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.38
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.36
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.36
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	96.33
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.32
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.3
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.29
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.29
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.28
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.26
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.24
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.18
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.17
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.17
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.16
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.16
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.14
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.06
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.05
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.04
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.03
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.87
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.85
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.78
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.75
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.74
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.7
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.62
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.6
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.49
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.49
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.49
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.42
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.41
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.38
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.34
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.34
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.33
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.25
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.23
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.09
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.03
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.02
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	94.94
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.85
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	94.85
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.82
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.8
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.8
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	94.78
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.61
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.53
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.5
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.42
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	94.39
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.39
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.33
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.3
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.27
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.26
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.21
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.18
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.96
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.94
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.93
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.81
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.65
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.62
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.99
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.89
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.82
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.7
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.48
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.3
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	92.24
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.98
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.91
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	91.6
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.48
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.27
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	90.93
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	90.74
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.53
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	89.32
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	89.0
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	88.88
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.79
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	88.61
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	88.44
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.35
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.26
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.25
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.05
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	85.32
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.9
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	82.62
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	81.99
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	81.27
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	80.37

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-32  Score=193.99  Aligned_cols=132  Identities=16%  Similarity=0.189  Sum_probs=111.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      +||+++|++|||||||++++.+                   +++..+.+.+||++|++.++.+++.+++++|++++|||+
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~   81 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV   81 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence            7999999999999999999987                   456678999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +++.+|+.+..|+..+.......++|+++|+||+|+.+  .++.++++.+.        ++||++|.||+++|+.+++.+
T Consensus        82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i  161 (168)
T d2gjsa1          82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI  161 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            99999999999999987766567899999999999976  46777776665        679999999999999999887


Q ss_pred             h
Q psy11510        170 S  170 (171)
Q Consensus       170 ~  170 (171)
                      .
T Consensus       162 ~  162 (168)
T d2gjsa1         162 R  162 (168)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.2e-32  Score=194.28  Aligned_cols=137  Identities=17%  Similarity=0.326  Sum_probs=122.8

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ++.+.+||+++|++|||||||++++..                    .++..+.+.+||++|++.+...++.+++++|++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            467889999999999999999999987                    455678899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~  163 (171)
                      ++|||++++.+|+.+..|+..+.+.....+.|+++|+||+|+.+  ..+.+++..+.        ++||++|.||+++|+
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  161 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            99999999999999999999987766667899999999999875  46677777775        679999999999999


Q ss_pred             HHHHHHh
Q psy11510        164 VLLNEVS  170 (171)
Q Consensus       164 ~l~~~i~  170 (171)
                      .+++.+.
T Consensus       162 ~l~~~i~  168 (173)
T d2fn4a1         162 QLVRAVR  168 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.6e-32  Score=191.02  Aligned_cols=135  Identities=17%  Similarity=0.266  Sum_probs=120.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++..                    .+...+.+.+||++|++.+..+++.+++++|++++|
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   81 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV   81 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence            678999999999999999999987                    556778999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH---------HhhhccCCCHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS---------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~---------~~sa~~~~~v~~~f~~l  165 (171)
                      ||++++.+|+.+..|+..+.+....+++|+++|+||+|+..  ..+.++.....         ++||++|.||+++|+.+
T Consensus        82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l  161 (167)
T d1c1ya_          82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL  161 (167)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999997766567899999999999976  45555555544         67999999999999999


Q ss_pred             HHHHhC
Q psy11510        166 LNEVSN  171 (171)
Q Consensus       166 ~~~i~~  171 (171)
                      ++.|.+
T Consensus       162 ~~~i~k  167 (167)
T d1c1ya_         162 VRQINR  167 (167)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            998853

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=7e-32  Score=191.08  Aligned_cols=136  Identities=19%  Similarity=0.255  Sum_probs=122.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      .+.+||+++|+.|||||||++++.+                    .+...+.+.+||++|++.+..+++.+++++|++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll   81 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI   81 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence            4679999999999999999999986                    45567889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCC-CHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKL-NKQSKFQV  164 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~-~v~~~f~~  164 (171)
                      |||++++.||+.+..|+..+.+.....+.|+++++||+|+..  .++.+++.++.        ++||+++. ||+++|+.
T Consensus        82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~  161 (169)
T d1x1ra1          82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHD  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHH
T ss_pred             ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHH
Confidence            999999999999999999987766667899999999999977  57788887776        67999875 99999999


Q ss_pred             HHHHHhC
Q psy11510        165 LLNEVSN  171 (171)
Q Consensus       165 l~~~i~~  171 (171)
                      +++.|++
T Consensus       162 l~~~i~~  168 (169)
T d1x1ra1         162 LVRVIRQ  168 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999863

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=3.6e-31  Score=187.91  Aligned_cols=141  Identities=39%  Similarity=0.635  Sum_probs=124.3

Q ss_pred             cccCCC-CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCC
Q psy11510         29 LRHRPQ-VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTD   91 (171)
Q Consensus        29 ~~~~~~-~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   91 (171)
                      +++.++ +.+.+||+++|++|||||||++++.+                +...++.+.+||++|++.++..++.+++.+|
T Consensus         6 ~~k~~~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_           6 LRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             HHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             HHHhhCCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccc
Confidence            344433 67789999999999999999999987                4556789999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCH
Q psy11510         92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNK  158 (171)
Q Consensus        92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v  158 (171)
                      ++++|||+++..++.++..|+..+.......++|+++|+||+|+.+....+++.+..             ++||++|+|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv  165 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            999999999999999999999998887777889999999999998877766665543             5699999999


Q ss_pred             HHHHHHHHHHH
Q psy11510        159 QSKFQVLLNEV  169 (171)
Q Consensus       159 ~~~f~~l~~~i  169 (171)
                      +++|+++++.|
T Consensus       166 ~e~~~~l~~~i  176 (176)
T d1fzqa_         166 QDGMNWVCKNV  176 (176)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.97  E-value=1.9e-31  Score=188.67  Aligned_cols=134  Identities=21%  Similarity=0.330  Sum_probs=118.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++..                    +++..+.+.+||++|++.+..+++.+++++|++++|
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV   82 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence            678999999999999999999976                    455568899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      ||++++.+|+.+..|+.++.+....+++|+++|+||+|+.+  .++.+++..+.        ++||++|.||+++|+.++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  162 (168)
T d1u8za_          83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999999998766667899999999999976  57778877765        779999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +++.
T Consensus       163 ~~i~  166 (168)
T d1u8za_         163 REIR  166 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-31  Score=190.64  Aligned_cols=137  Identities=12%  Similarity=0.174  Sum_probs=118.6

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      +.+..+||+++|++|||||||++++..                    ..+..+.+.+||++|++.+..++..+++++|++
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            356789999999999999999999987                    445678899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hh
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EK  150 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~  150 (171)
                      ++|||+++++||+++..|+...++.. .+++|+++|+||+|+.+              .++.++..++.         |+
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            99999999999998877777666543 46899999999999864              45666666553         67


Q ss_pred             hhccCCCHHHHHHHHHHHHhC
Q psy11510        151 ATKVKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       151 sa~~~~~v~~~f~~l~~~i~~  171 (171)
                      ||++|.||+++|+.++++|++
T Consensus       164 SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             cCCCCcCHHHHHHHHHHHHcC
Confidence            999999999999999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.97  E-value=1.6e-31  Score=191.03  Aligned_cols=141  Identities=35%  Similarity=0.576  Sum_probs=122.9

Q ss_pred             ccCCCCCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEE
Q psy11510         30 RHRPQVSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGL   93 (171)
Q Consensus        30 ~~~~~~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i   93 (171)
                      ++++..++.+||+++|++|||||||++++..                .....+.+.+||++|++.++.+++.++.++|++
T Consensus         9 ~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_           9 DKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             GGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             HHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhhhccceeE
Confidence            3455678899999999999999999999987                455788999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHH
Q psy11510         94 IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQS  160 (171)
Q Consensus        94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~  160 (171)
                      ++|+|+++..++.+...|+...++.....++|+++|+||+|+.+..+.+++.+..             ++||++|+|+++
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  168 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITE  168 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHH
Confidence            9999999999999999999988887777889999999999999888888777654             679999999999


Q ss_pred             HHHHHHHHHh
Q psy11510        161 KFQVLLNEVS  170 (171)
Q Consensus       161 ~f~~l~~~i~  170 (171)
                      +|+++++.+.
T Consensus       169 ~~~~l~~~i~  178 (182)
T d1moza_         169 GLDWLIDVIK  178 (182)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=5.5e-31  Score=186.28  Aligned_cols=134  Identities=22%  Similarity=0.352  Sum_probs=117.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      +.+||+++|++|||||||++++..                     .....+.+++||+||++.+..+++.+++++|++|+
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999986                     34456789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||+++++++..+..|+..+.. ...++.|+++|+||+|+.+  .++.++++.+.        ++||++|.||+++|+.+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  162 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKT-YSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  162 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECccchhhhhhhhhhhhhhc-ccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHH
Confidence            9999999999999988877643 3456899999999999987  56777776665        67999999999999999


Q ss_pred             HHHHhC
Q psy11510        166 LNEVSN  171 (171)
Q Consensus       166 ~~~i~~  171 (171)
                      ++.|++
T Consensus       163 ~~~i~e  168 (169)
T d3raba_         163 VDVICE  168 (169)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=188.67  Aligned_cols=135  Identities=17%  Similarity=0.228  Sum_probs=121.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      .+.+||+++|++|||||||++++.+                    +++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            4678999999999999999999986                    45556888999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||++++++|+.+..|+..+.+....+++|+++|+||+|+..  .++.+++.++.        ++||++|.||+++|+.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            999999999999999999998776667899999999999976  57788877775        67999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++++.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=188.65  Aligned_cols=133  Identities=15%  Similarity=0.265  Sum_probs=115.9

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +.||+++|++|||||||++++..                    .+...+.+.+||++|++.+..+++.+++++|++++||
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF   81 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence            57999999999999999999997                    4456778999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhcc
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATKV  154 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~~  154 (171)
                      |++++.||+++..|+...+... .+++|+++|+||+|+.+              .++.++...+.         ++||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          82 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             ccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999888777766543 46899999999999964              35566665553         679999


Q ss_pred             CCCHHHHHHHHHHHHhC
Q psy11510        155 KLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       155 ~~~v~~~f~~l~~~i~~  171 (171)
                      |.||+++|+.+++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999999875

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.3e-31  Score=184.76  Aligned_cols=135  Identities=15%  Similarity=0.271  Sum_probs=121.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++.+                    .....+.+.+||++|++.+...++.+++.++++++|
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv   81 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence            568999999999999999999987                    445578899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      +|++++.+|+.+..|+..+.+....+++|+++|+||+|+.. .+..+++.++.        ++||++|+||+++|..+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~  161 (166)
T d1ctqa_          82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR  161 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHH
Confidence            99999999999999999987766667899999999999977 45677776665        6799999999999999999


Q ss_pred             HHhC
Q psy11510        168 EVSN  171 (171)
Q Consensus       168 ~i~~  171 (171)
                      .+.+
T Consensus       162 ~i~~  165 (166)
T d1ctqa_         162 EIRQ  165 (166)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-31  Score=187.17  Aligned_cols=134  Identities=16%  Similarity=0.271  Sum_probs=119.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++..                    .+...+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   81 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV   81 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence            679999999999999999999987                    455678899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      ||++++.+|..+..|+..+......+++|+++|+||+|+.+  .+..+++..+.        ++||++|.||+++|+.++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_          82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHH
T ss_pred             eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHH
Confidence            99999999999999999887655567899999999999876  56666666655        669999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +++.
T Consensus       162 ~~i~  165 (167)
T d1kaoa_         162 RQMN  165 (167)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8863

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.9e-31  Score=187.28  Aligned_cols=134  Identities=22%  Similarity=0.274  Sum_probs=112.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++..                     .++..+.+.+||++|++.+..+++.+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            468999999999999999999986                     45557899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||+++++||+.+..|+..+... .....|+++|+||+|+..  .++.+++..+.        ++||++|.||+++|+.|
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l  160 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHH
Confidence            99999999999999998877443 346789999999999975  57888888776        66999999999999999


Q ss_pred             HHHHhC
Q psy11510        166 LNEVSN  171 (171)
Q Consensus       166 ~~~i~~  171 (171)
                      ++.+++
T Consensus       161 ~~~i~~  166 (167)
T d1z08a1         161 CKRMIE  166 (167)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            999875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.1e-30  Score=183.70  Aligned_cols=135  Identities=56%  Similarity=0.845  Sum_probs=121.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA  100 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~  100 (171)
                      +.+||+++|++|||||||++++.+                +...++.+.+||++|++.++..++.+++.++++++|+|++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~   80 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA   80 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence            468999999999999999999998                5667889999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHH
Q psy11510        101 DKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       101 ~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      +..++.+...++...+......++|+++|+||+|+++..+.++.....             ++||++|+|+.++|++|++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  160 (165)
T d1ksha_          81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLD  160 (165)
T ss_dssp             CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999888888877777899999999999999877777766553             5799999999999999999


Q ss_pred             HHhC
Q psy11510        168 EVSN  171 (171)
Q Consensus       168 ~i~~  171 (171)
                      ++.+
T Consensus       161 ~i~~  164 (165)
T d1ksha_         161 DISS  164 (165)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8864

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.2e-31  Score=185.37  Aligned_cols=134  Identities=17%  Similarity=0.324  Sum_probs=116.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++..                    +++..+.+.+||++|++.+...++.+++.+|++++|
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            568999999999999999999987                    445568899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      ||++++.||+.+..|+..+++.....+.|+++|+||+|+.+  .++.+++.++.        ++||++|.||+++|+.++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            99999999999999999988776667899999999999976  47777777776        669999999999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +.|.
T Consensus       164 ~~i~  167 (171)
T d2erya1         164 RVIR  167 (171)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=184.19  Aligned_cols=133  Identities=20%  Similarity=0.344  Sum_probs=117.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++.+                     .++..+.+.+||++|++.+..++..+++++|++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            468999999999999999999986                     45567899999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||+++.++|+.+..|+..+.+ ......|+++++||+|+..  ....++++.+.        ++||++|.||+++|+.+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i  161 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARN-LTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  161 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHH-HSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeccCchHHHHHHHHHHHHHHh-hccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999888754 3456899999999999865  45666666665        67999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      +++++
T Consensus       162 ~~~i~  166 (166)
T d1z0fa1         162 AKKIY  166 (166)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99875

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.4e-31  Score=186.46  Aligned_cols=132  Identities=16%  Similarity=0.313  Sum_probs=117.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      .+||+++|++|||||||++++.+                     ..+..+.+.+||++|++.+..+++.++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            37999999999999999999996                     344567899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~  166 (171)
                      ||++++.+|+.+..|+.++.+.  .+++|+++|+||+|+.+  .++.++++.+.        ++||++|.||+++|+.++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~--~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~  159 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAE--VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  159 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH--HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             Eeccchhhhhhccccccccccc--CCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHH
Confidence            9999999999999999998654  36899999999999865  56777777665        559999999999999999


Q ss_pred             HHHhC
Q psy11510        167 NEVSN  171 (171)
Q Consensus       167 ~~i~~  171 (171)
                      +.+++
T Consensus       160 ~~~lq  164 (164)
T d1z2aa1         160 EKHLQ  164 (164)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.97  E-value=1.7e-30  Score=184.28  Aligned_cols=135  Identities=33%  Similarity=0.600  Sum_probs=122.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      .++.+||+++|++|||||||++++.+                .....+.+.+||+||++.++..++.++++++++++|+|
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D   88 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD   88 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEe
Confidence            46789999999999999999999997                45567899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l  165 (171)
                      +++..++..+..|+...++.....+.|+++++||+|+++.....++.+.+             ++||++|+||+++|++|
T Consensus        89 ~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l  168 (173)
T d1e0sa_          89 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL  168 (173)
T ss_dssp             TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            99999999999999998887777899999999999999877777766654             56999999999999999


Q ss_pred             HHHH
Q psy11510        166 LNEV  169 (171)
Q Consensus       166 ~~~i  169 (171)
                      .+.+
T Consensus       169 ~~~~  172 (173)
T d1e0sa_         169 TSNY  172 (173)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            8764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=183.15  Aligned_cols=133  Identities=29%  Similarity=0.524  Sum_probs=121.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      +.+||+++|++|||||||++++..                 ++.+++.+++||++|++.+...|..++..+|++++|||+
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~   80 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDA   80 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEET
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhccccc
Confidence            368999999999999999999987                 455778999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHH
Q psy11510        100 ADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLL  166 (171)
Q Consensus       100 ~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~  166 (171)
                      ++..+|++...|+..+++....+++|+++|+||+|+.+..+.+++.+..             ++||++|+|++++|++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~  160 (164)
T d1zd9a1          81 ADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI  160 (164)
T ss_dssp             TCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHH
T ss_pred             ccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHH
Confidence            9999999999999999888878899999999999998877777766664             679999999999999998


Q ss_pred             HHH
Q psy11510        167 NEV  169 (171)
Q Consensus       167 ~~i  169 (171)
                      +.+
T Consensus       161 ~~~  163 (164)
T d1zd9a1         161 QHS  163 (164)
T ss_dssp             HTC
T ss_pred             Hcc
Confidence            854

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.8e-31  Score=185.47  Aligned_cols=133  Identities=23%  Similarity=0.307  Sum_probs=117.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++..                     ..+..+.+.+||++|++.+..+++.++++++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            468999999999999999999986                     34556789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |+|++++.+++.+.+|+..+.+. ...++|+++|+||+|+.+  .++.+++.++.        ++||++|.||+++|..+
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l  162 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eeecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHH
Confidence            99999999999999998888553 346799999999999876  56677776666        57999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      +++++
T Consensus       163 ~~~l~  167 (171)
T d2ew1a1         163 ACRLI  167 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-31  Score=188.88  Aligned_cols=132  Identities=17%  Similarity=0.254  Sum_probs=114.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      .+||+++|++|||||||++++.+                     .++..+.+.+||++|++.+..+++.+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            47999999999999999999987                     455678999999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      ||+++++||+.+..|+..+.+.  .+++|+++|+||+|+......++.....        ++||++|.||+++|+.|++.
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~  160 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  160 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHH--HCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhc--cCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999988654  3689999999999998744433333343        78999999999999999998


Q ss_pred             HhC
Q psy11510        169 VSN  171 (171)
Q Consensus       169 i~~  171 (171)
                      +++
T Consensus       161 l~~  163 (170)
T d1i2ma_         161 LIG  163 (170)
T ss_dssp             HHT
T ss_pred             Hcc
Confidence            863

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.9e-30  Score=182.39  Aligned_cols=130  Identities=18%  Similarity=0.342  Sum_probs=115.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +||+++|++|||||||++++.+                     .+...+.+.+||++|++.+...++.+++++|++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            6999999999999999999986                     4456789999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++.+|+.+..|+..+... ..+++|+++|+||+|+.+  ....+++..+.        ++||++|.||+++|+.+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHh-cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            999999999999999987653 346899999999999975  56666776665        6799999999999999998


Q ss_pred             HH
Q psy11510        168 EV  169 (171)
Q Consensus       168 ~i  169 (171)
                      ++
T Consensus       160 ~l  161 (164)
T d1yzqa1         160 AL  161 (164)
T ss_dssp             HS
T ss_pred             hh
Confidence            76

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.8e-31  Score=185.56  Aligned_cols=134  Identities=17%  Similarity=0.203  Sum_probs=116.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++..                    .++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            468999999999999999999987                    455668899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcc-ccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEE-RLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      ||++++++|+.+..|+..+.+.. ...++|+++|+||+|+.+  .++.++++.+.        ++||++|.||+++|+.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999988876532 346799999999999965  57777777776        66999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.+.
T Consensus       161 ~~~~~  165 (171)
T d2erxa1         161 LNLEK  165 (171)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            98653

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.1e-30  Score=182.85  Aligned_cols=133  Identities=20%  Similarity=0.263  Sum_probs=117.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .+.+||+++|++|||||||++++..                     .+.....+.+||++|++.+..+++.+++++|+++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            4689999999999999999999986                     3344567889999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++++|+.+..|+..+.. ...++.|+++|+||+|+.+  .++.+++.++.        ++||++|.||+++|..
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQ-HGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHH-HSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhh-ccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999887754 3457899999999999976  47777777766        7799999999999999


Q ss_pred             HHHHH
Q psy11510        165 LLNEV  169 (171)
Q Consensus       165 l~~~i  169 (171)
                      ++++|
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99986

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-30  Score=187.15  Aligned_cols=134  Identities=17%  Similarity=0.335  Sum_probs=118.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------------------cccCceEEEEEecCCccchhHHHHH
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------------------IMTFRFKLNIWDVGGQKSLRSYWRN   85 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------------------~~~~~~~~~i~d~~g~~~~~~~~~~   85 (171)
                      ..+||+++|++|||||||++++.+                               .....+.+.+||++|++.++.+++.
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            468999999999999999999986                               1123467899999999999999999


Q ss_pred             hhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccC
Q psy11510         86 YFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVK  155 (171)
Q Consensus        86 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~  155 (171)
                      +++++|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+  .++.+++.++.        ++||++|
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~  163 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATG  163 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTT
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCC
Confidence            9999999999999999999999999998887666667899999999999976  57777777766        6699999


Q ss_pred             CCHHHHHHHHHHHHh
Q psy11510        156 LNKQSKFQVLLNEVS  170 (171)
Q Consensus       156 ~~v~~~f~~l~~~i~  170 (171)
                      .||+++|+.+++.+.
T Consensus       164 ~~i~e~f~~l~~~i~  178 (186)
T d2f7sa1         164 QNVEKAVETLLDLIM  178 (186)
T ss_dssp             BTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999999875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.9e-30  Score=181.92  Aligned_cols=134  Identities=18%  Similarity=0.291  Sum_probs=118.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++..                     .....+.+.+||++|++.+..+++.++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            568999999999999999999996                     34456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |+|.++..+|+.+..|+..+.+ ...++.|+++|+||+|+.+  .++.+++.++.        ++||++|.||+++|+.|
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l  163 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhh-ccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999999888854 3457899999999999876  57777777766        67999999999999999


Q ss_pred             HHHHhC
Q psy11510        166 LNEVSN  171 (171)
Q Consensus       166 ~~~i~~  171 (171)
                      ++.|.+
T Consensus       164 ~~~i~~  169 (170)
T d1r2qa_         164 AKKLPK  169 (170)
T ss_dssp             HHTSCC
T ss_pred             HHHHhh
Confidence            998753

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.2e-30  Score=181.45  Aligned_cols=136  Identities=20%  Similarity=0.279  Sum_probs=121.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .+.+||+++|++|||||||++++.+                     .+...+.+.+||++|++.+..+++.+++++|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            4679999999999999999999986                     4456788999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      +|||++++.+++.+..|+..+.........|+++++||.|... .++.+++..+.        ++||++|.||+++|+++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999997766667899999999999876 67777777766        66999999999999999


Q ss_pred             HHHHhC
Q psy11510        166 LNEVSN  171 (171)
Q Consensus       166 ~~~i~~  171 (171)
                      ++.+++
T Consensus       165 ~~~l~~  170 (177)
T d1x3sa1         165 VEKIIQ  170 (177)
T ss_dssp             HHHHHT
T ss_pred             HHHHcc
Confidence            998874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-30  Score=183.07  Aligned_cols=134  Identities=22%  Similarity=0.351  Sum_probs=117.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++.+                     .....+.+.+||++|++.+..+++.+++++|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            458999999999999999999986                     34456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||++++.+|+.+..|+..+.+. ..+++|+++|+||+|+..  ....++...+.        ++||++|.||+++|..+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i  160 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  160 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999888653 346899999999999865  45666666665        66999999999999999


Q ss_pred             HHHHhC
Q psy11510        166 LNEVSN  171 (171)
Q Consensus       166 ~~~i~~  171 (171)
                      ++++++
T Consensus       161 ~~~i~~  166 (173)
T d2a5ja1         161 AKEIYR  166 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998863

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-30  Score=183.05  Aligned_cols=133  Identities=23%  Similarity=0.357  Sum_probs=115.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++.+                     .+...+.+.+||++|+++|...+..+++.+|++++
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            468999999999999999999987                     44556889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |||++++.+|+.+.+|+..+.+. ..+++|+++|+||+|+.+  ....+......        ++||++|.|++++|+.+
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l  161 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHh-cCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHH
Confidence            99999999999999999888654 346899999999999986  34444444443        67999999999999999


Q ss_pred             HHHHh
Q psy11510        166 LNEVS  170 (171)
Q Consensus       166 ~~~i~  170 (171)
                      ++.++
T Consensus       162 ~~~i~  166 (175)
T d2f9la1         162 LTEIY  166 (175)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-30  Score=181.64  Aligned_cols=132  Identities=18%  Similarity=0.223  Sum_probs=114.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      .+||+++|++|||||||++++..                    .++..+.+.+||++|++.+. ....+++++|++++||
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~   80 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY   80 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence            58999999999999999999997                    34556889999999998875 4567889999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCC-CHHHHHHHHH
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKL-NKQSKFQVLL  166 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~-~v~~~f~~l~  166 (171)
                      |++++.+|+.+..|+.........++.|+++|+||+|+.+  .++.+++.++.        ++||++|. ||+++|..++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~  160 (168)
T d2atva1          81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC  160 (168)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHH
T ss_pred             ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHH
Confidence            9999999999998877665555557899999999999975  57888877776        67999998 6999999999


Q ss_pred             HHHh
Q psy11510        167 NEVS  170 (171)
Q Consensus       167 ~~i~  170 (171)
                      +++.
T Consensus       161 ~~i~  164 (168)
T d2atva1         161 REVR  164 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.4e-30  Score=184.99  Aligned_cols=134  Identities=13%  Similarity=0.206  Sum_probs=116.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      +.+||+++|++|||||||++++..                    .++..+.+.+||++|++++..+++.+++++|++++|
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            468999999999999999999987                    445567899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhc
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATK  153 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~  153 (171)
                      ||+++++||+++.+|+....... .++.|+++|+||+|+.+              .++.+++.++.         ++||+
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHH-CTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhc-CCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            99999999999987776665543 46899999999999853              36677766654         67999


Q ss_pred             cCCCHHHHHHHHHHHHhC
Q psy11510        154 VKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~i~~  171 (171)
                      +|.||+++|+.+++.+++
T Consensus       161 ~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTS
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            999999999999988763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-29  Score=179.88  Aligned_cols=134  Identities=19%  Similarity=0.286  Sum_probs=116.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++..                     .+...+.+.+||++|++++..+++.+++.++++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            568999999999999999999986                     34556789999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l  165 (171)
                      |+|++++++|..+..|+..+.... .+++|+++|+||+|+..  ....++...+.        ++||++|.|++++|+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l  162 (174)
T d2bmea1          84 VYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  162 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHH
Confidence            999999999999999999886543 46899999999999865  45555555554        66999999999999999


Q ss_pred             HHHHhC
Q psy11510        166 LNEVSN  171 (171)
Q Consensus       166 ~~~i~~  171 (171)
                      ++++++
T Consensus       163 ~~~i~~  168 (174)
T d2bmea1         163 ARKILN  168 (174)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998763

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-29  Score=178.19  Aligned_cols=134  Identities=24%  Similarity=0.381  Sum_probs=110.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      ..+||+++|++|||||||++++..                      ..+..+.+++|||+|++++..+++.+++++|+++
T Consensus         5 ~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i   84 (170)
T d2g6ba1           5 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALL   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeE
Confidence            468999999999999999999976                      3445678999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++.+++.+..|+..+.... ....|+++|+||+|+.+  .++.+++..+.        ++||++|.||+++|+.
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  163 (170)
T d2g6ba1          85 LLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  163 (170)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            9999999999999999988876543 46789999999999987  56777776666        5699999999999999


Q ss_pred             HHHHHhC
Q psy11510        165 LLNEVSN  171 (171)
Q Consensus       165 l~~~i~~  171 (171)
                      ++++|.+
T Consensus       164 l~~~i~k  170 (170)
T d2g6ba1         164 IAKELKR  170 (170)
T ss_dssp             HHHHHHC
T ss_pred             HHHHcCC
Confidence            9999864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.4e-29  Score=179.63  Aligned_cols=134  Identities=17%  Similarity=0.281  Sum_probs=105.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      +.+||+++|++|||||||++++.+                      .......+.+||++|++.+...+..+++.+++++
T Consensus         1 n~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   80 (175)
T d1ky3a_           1 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   80 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEE
Confidence            358999999999999999999986                      2334567899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhc---cccCCCeEEEEEeCCCCCC---CCCHHHHHHHH---------HhhhccCCCHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQE---ERLAGATLLVFANKQDIEG---ALTPEDIKNVS---------EKATKVKLNKQ  159 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ivv~nK~Dl~~---~~~~~~~~~~~---------~~sa~~~~~v~  159 (171)
                      +|||++++.+|+.+..|+.++...   ....++|+++|+||+|+.+   .++.+++.++.         ++||++|.||+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~  160 (175)
T d1ky3a_          81 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  160 (175)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHH
Confidence            999999999999999999888653   2235789999999999975   35666666655         66999999999


Q ss_pred             HHHHHHHHHHh
Q psy11510        160 SKFQVLLNEVS  170 (171)
Q Consensus       160 ~~f~~l~~~i~  170 (171)
                      ++|+.+++.++
T Consensus       161 e~f~~l~~~~l  171 (175)
T d1ky3a_         161 TAFEEIARSAL  171 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999876

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2e-29  Score=182.03  Aligned_cols=134  Identities=21%  Similarity=0.325  Sum_probs=117.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      -..+||+++|++|||||||++++..                     +....+.+.+||++|++++..+|+.+++++|+++
T Consensus         4 ~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i   83 (194)
T d2bcgy1           4 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   83 (194)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            3568999999999999999999997                     3456789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||+++++++..+..|+..+.+ ....+.|+++|+||+|+.+  .+..++.....        ++||++|.||+++|+.
T Consensus        84 ~v~d~t~~~s~~~~~~~~~~~~~-~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~  162 (194)
T d2bcgy1          84 IVYDVTDQESFNGVKMWLQEIDR-YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  162 (194)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEeCcchhhhhhHhhhhhhhhh-cccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHH
Confidence            99999999999999988887744 3457899999999999987  45666655554        5699999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       163 l~~~i~  168 (194)
T d2bcgy1         163 MARQIK  168 (194)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.4e-29  Score=180.75  Aligned_cols=133  Identities=18%  Similarity=0.261  Sum_probs=116.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVV   97 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~   97 (171)
                      +.||+++|++|||||||++++..                    .+...+.+++||++|++.+...++.+++++|++++||
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~   81 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF   81 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence            57999999999999999999987                    5567789999999999999999999999999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhhcc
Q psy11510         98 DSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKATKV  154 (171)
Q Consensus        98 d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa~~  154 (171)
                      |+++++||+.+..|+...+... .+++|+++||||+|+..              .++.++...+.         |+||++
T Consensus        82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          82 DISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             ETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             ecccCCCHHHHHHHHHHHHhcc-CCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988777765543 46899999999999852              36667666654         679999


Q ss_pred             CCC-HHHHHHHHHHHHhC
Q psy11510        155 KLN-KQSKFQVLLNEVSN  171 (171)
Q Consensus       155 ~~~-v~~~f~~l~~~i~~  171 (171)
                      |.| ++++|+.+++.++|
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            985 99999999999875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-29  Score=181.67  Aligned_cols=135  Identities=13%  Similarity=0.171  Sum_probs=114.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ++.+||+++|++|||||||++++..                    .+...+.+.+||++|++.+..+++.+++++|++++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            5789999999999999999999997                    45667888999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--------------CCCHHHHHHHH---------Hhhh
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--------------ALTPEDIKNVS---------EKAT  152 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--------------~~~~~~~~~~~---------~~sa  152 (171)
                      |||++++++|+++..|+...++.. ..++|+++|+||+|+.+              .....+...+.         |+||
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHh-CCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            999999999999987666665543 46899999999999753              23334443332         5799


Q ss_pred             ccCCCHHHHHHHHHHHHhC
Q psy11510        153 KVKLNKQSKFQVLLNEVSN  171 (171)
Q Consensus       153 ~~~~~v~~~f~~l~~~i~~  171 (171)
                      ++|.||+++|+.+++++++
T Consensus       162 k~~~~V~e~F~~l~~~il~  180 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLC  180 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSC
T ss_pred             CCCcCHHHHHHHHHHHHcC
Confidence            9999999999999999875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.6e-29  Score=178.18  Aligned_cols=132  Identities=13%  Similarity=0.183  Sum_probs=113.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc----------------------cccCceEEEEEecCC---ccchhHHHHHhhhCCC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM----------------------IMTFRFKLNIWDVGG---QKSLRSYWRNYFESTD   91 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~----------------------~~~~~~~~~i~d~~g---~~~~~~~~~~~~~~~~   91 (171)
                      ..+||+++|++|||||||++++..                      +++..+.+.+||+++   ++++  +++.+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            468999999999999999999976                      344566778888664   5544  6778899999


Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHH
Q psy11510         92 GLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSK  161 (171)
Q Consensus        92 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~  161 (171)
                      ++++|||++++.+|+.+..|+..+......+++|+++|+||+|+.+  .++.+++..+.        ++||++|.||+++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999999987766667999999999999976  57777776665        5699999999999


Q ss_pred             HHHHHHHHh
Q psy11510        162 FQVLLNEVS  170 (171)
Q Consensus       162 f~~l~~~i~  170 (171)
                      |+.++++|.
T Consensus       160 f~~l~~~i~  168 (172)
T d2g3ya1         160 FEGIVRQVR  168 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.9e-29  Score=176.06  Aligned_cols=136  Identities=18%  Similarity=0.314  Sum_probs=119.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      .+.+||+++|++|||||||++++..                     .....+.+.+||++|+......++.++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            4578999999999999999999986                     3445688899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhc---cccCCCeEEEEEeCCCCCC-CCCHHHHHHHH---------HhhhccCCCHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQE---ERLAGATLLVFANKQDIEG-ALTPEDIKNVS---------EKATKVKLNKQSK  161 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~---------~~sa~~~~~v~~~  161 (171)
                      +++|.+++.+|+.+..|+.++...   ....+.|+++|+||+|+.+ .++.++++++.         ++||++|.||+++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA  163 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHH
Confidence            999999999999999998877542   3335799999999999977 67888877776         6799999999999


Q ss_pred             HHHHHHHHhC
Q psy11510        162 FQVLLNEVSN  171 (171)
Q Consensus       162 f~~l~~~i~~  171 (171)
                      |+.++++|+.
T Consensus       164 f~~l~~~il~  173 (174)
T d1wmsa_         164 FEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999874

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=2.3e-29  Score=178.49  Aligned_cols=134  Identities=20%  Similarity=0.388  Sum_probs=91.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLI   94 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   94 (171)
                      -+.+||+++|.+|||||||++++..                     .++..+.+++||+||++.+..+++.+++.+|++|
T Consensus         4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i   83 (173)
T d2fu5c1           4 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   83 (173)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             cEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEE
Confidence            3568999999999999999999997                     3455688999999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------HhhhccCCCHHHHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKVKLNKQSKFQV  164 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~~~~v~~~f~~  164 (171)
                      +|||++++.+|+.+..|+..+.. ....+.|+++|+||+|+..  ....+++....        ++||++|+||+++|++
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~  162 (173)
T d2fu5c1          84 LVYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT  162 (173)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHH-HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred             EEEECCChhhHHHHHHHHHHhhh-hccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999888854 3457899999999999986  44455554444        6799999999999999


Q ss_pred             HHHHHh
Q psy11510        165 LLNEVS  170 (171)
Q Consensus       165 l~~~i~  170 (171)
                      +++.+.
T Consensus       163 l~~~i~  168 (173)
T d2fu5c1         163 LARDIK  168 (173)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.1e-28  Score=173.35  Aligned_cols=130  Identities=18%  Similarity=0.299  Sum_probs=112.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhH-HHHHhhhCCCEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRS-YWRNYFESTDGLI   94 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ii   94 (171)
                      +.+||+++|++|||||||++++..                     .......+.+||++|...+.. .++.+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            468999999999999999999987                     344567789999999877754 5788999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC--CCCHHHHHHHH--------Hhhhcc---CCCHHHH
Q psy11510         95 WVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG--ALTPEDIKNVS--------EKATKV---KLNKQSK  161 (171)
Q Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~--~~~~~~~~~~~--------~~sa~~---~~~v~~~  161 (171)
                      +|||++++++|+.+..|+..+.+....+++|+++||||+|+.+  .++.+++++++        ++||++   |+||+++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999999998776667899999999999976  57888887776        669886   6799999


Q ss_pred             HHHHH
Q psy11510        162 FQVLL  166 (171)
Q Consensus       162 f~~l~  166 (171)
                      |+.||
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.6e-28  Score=172.79  Aligned_cols=132  Identities=24%  Similarity=0.378  Sum_probs=116.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      .+||+++|++|||||||++++..                     .++..+.+.+||+||++.+..+++.++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999987                     455678899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-CCCHHHHHHHH--------HhhhccCCCHHHHHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-ALTPEDIKNVS--------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~--------~~sa~~~~~v~~~f~~l~~  167 (171)
                      ||++++++++.+..|+..+... .....|+++++||.|+.. ....+++.++.        ++||++|.||+++|+.+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999888777543 346789999999999987 46677776665        6699999999999999999


Q ss_pred             HHh
Q psy11510        168 EVS  170 (171)
Q Consensus       168 ~i~  170 (171)
                      .+.
T Consensus       161 ~i~  163 (166)
T d1g16a_         161 LIQ  163 (166)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.2e-28  Score=172.72  Aligned_cols=132  Identities=19%  Similarity=0.268  Sum_probs=115.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEE
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   95 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~   95 (171)
                      ..+||+++|++|||||||++++..                     .....+.+.+||++|++.+..+++.++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            368999999999999999999997                     34456889999999999999999999999999999


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-----CCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         96 VVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG-----ALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        96 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-----~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      |||++++.+|+.+..|+..+... .....|+++++||+|+.+     .++.+++.++.        ++||++|.||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F  160 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHH
Confidence            99999999999999998876543 346899999999999853     46777776665        77999999999999


Q ss_pred             HHHHHHH
Q psy11510        163 QVLLNEV  169 (171)
Q Consensus       163 ~~l~~~i  169 (171)
                      +.++++|
T Consensus       161 ~~i~~~i  167 (170)
T d1ek0a_         161 LGIGEKI  167 (170)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHh
Confidence            9998865

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-28  Score=172.11  Aligned_cols=130  Identities=15%  Similarity=0.224  Sum_probs=109.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      .+.+||+++|+.|||||||++++.+                   +++..+.+.+||++|+..+.     |++.+|++++|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~~-----~~~~ad~~ilV   77 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFV   77 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCHH-----HHHHCSEEEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeecccccccc-----cccccceeEEE
Confidence            4689999999999999999999987                   45667899999999988653     68889999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHh--ccccCCCeEEEEEeCCCCCC----CCCHHHHHHHH---------HhhhccCCCHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQ--EERLAGATLLVFANKQDIEG----ALTPEDIKNVS---------EKATKVKLNKQSK  161 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~--~~~~~~~p~ivv~nK~Dl~~----~~~~~~~~~~~---------~~sa~~~~~v~~~  161 (171)
                      ||++++.||+.+..|+..+..  .....+.|+++|+||.|+..    .++.+++..+.         ++||++|.|++++
T Consensus        78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~  157 (175)
T d2bmja1          78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV  157 (175)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHH
T ss_pred             eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHH
Confidence            999999999999998887743  23346789999999988754    46677776664         6699999999999


Q ss_pred             HHHHHHHHh
Q psy11510        162 FQVLLNEVS  170 (171)
Q Consensus       162 f~~l~~~i~  170 (171)
                      |..+++.++
T Consensus       158 F~~l~~~i~  166 (175)
T d2bmja1         158 FQEVAQKVV  166 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2e-28  Score=175.06  Aligned_cols=134  Identities=19%  Similarity=0.303  Sum_probs=115.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEE
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   96 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v   96 (171)
                      -+||+++|.+|||||||++++.+                     .....+.+.+||++|+..+...++.++..+|++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            37999999999999999999997                     444567899999999999999999999999999999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcc---ccCCCeEEEEEeCCCCCC-CCCHHHHHHHH---------HhhhccCCCHHHHHH
Q psy11510         97 VDSADKRRLEDCARELHELLQEE---RLAGATLLVFANKQDIEG-ALTPEDIKNVS---------EKATKVKLNKQSKFQ  163 (171)
Q Consensus        97 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~---------~~sa~~~~~v~~~f~  163 (171)
                      +|.+++.+++.+..|+..+....   ...++|+++|+||+|+.+ .+..++..++.         ++||++|.||+++|+
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999999998876542   234689999999999977 56666665554         579999999999999


Q ss_pred             HHHHHHhC
Q psy11510        164 VLLNEVSN  171 (171)
Q Consensus       164 ~l~~~i~~  171 (171)
                      .+++.+++
T Consensus       162 ~l~~~i~~  169 (184)
T d1vg8a_         162 TIARNALK  169 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998763

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.95  E-value=6.4e-27  Score=162.52  Aligned_cols=131  Identities=35%  Similarity=0.604  Sum_probs=118.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK  102 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~  102 (171)
                      +||+++|++|||||||++++.+                .+...+.+.+||++|...+...+..++..++++++++|.+++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~   80 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR   80 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence            5999999999999999999987                556788999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHHHH
Q psy11510        103 RRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       103 ~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      .++.....|+.+++........|+++++||.|+.+....+++....             ++||++|+|++++|++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_          81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            9999999999999888777899999999999999877666655443             579999999999999998864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.94  E-value=9.1e-26  Score=159.54  Aligned_cols=135  Identities=32%  Similarity=0.486  Sum_probs=116.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      .++.+||+++|.+|||||||++++.+                ....++.+.+||+++++..+..+..++..++++++|+|
T Consensus        12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d   91 (177)
T d1zj6a1          12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD   91 (177)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeecc
Confidence            46789999999999999999999998                44567899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHH
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVL  165 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l  165 (171)
                      .++..++.....++..........+.|+++|+||+|++.....+++.+..             ++||++|+|++++|+++
T Consensus        92 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L  171 (177)
T d1zj6a1          92 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWM  171 (177)
T ss_dssp             TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHH
T ss_pred             cccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999988877777777777899999999999998877777776665             56999999999999999


Q ss_pred             HHHH
Q psy11510        166 LNEV  169 (171)
Q Consensus       166 ~~~i  169 (171)
                      ++++
T Consensus       172 ~~~l  175 (177)
T d1zj6a1         172 MSRL  175 (177)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=1.7e-25  Score=160.11  Aligned_cols=134  Identities=21%  Similarity=0.346  Sum_probs=108.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR  104 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s  104 (171)
                      +.+||+++|+.|||||||++|+..            ++...+.+++||++|++.++..|+.+++.++++++|+|+++..+
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~   80 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDL   80 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccch
Confidence            479999999999999999999986            56678899999999999999999999999999999999988765


Q ss_pred             H----------HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC-----------------CCCHHHHHHHH---------
Q psy11510        105 L----------EDCARELHELLQEERLAGATLLVFANKQDIEG-----------------ALTPEDIKNVS---------  148 (171)
Q Consensus       105 ~----------~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~-----------------~~~~~~~~~~~---------  148 (171)
                      +          .+...++..++......+.|+++++||+|+..                 ....++.....         
T Consensus        81 ~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  160 (195)
T d1svsa1          81 VLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNK  160 (195)
T ss_dssp             BCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhc
Confidence            4          34445566666777778999999999998621                 11222222111         


Q ss_pred             ----------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        149 ----------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       149 ----------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                                ++||++|.||+++|+.+.+.|+
T Consensus       161 ~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         161 RKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             CTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence                      4799999999999999988775

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.91  E-value=2.2e-24  Score=152.66  Aligned_cols=135  Identities=24%  Similarity=0.446  Sum_probs=116.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEe
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD   98 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d   98 (171)
                      .++..||+++|++|||||||++++.+                .......+..||+.++..+...+..+...++++++++|
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   89 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVD   89 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhcccceeeeeee
Confidence            57889999999999999999999988                33446778999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------------------Hhhhc
Q psy11510         99 SADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------------------EKATK  153 (171)
Q Consensus        99 ~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------------------~~sa~  153 (171)
                      +++...+.....++..........+.|+++++||+|++...+.+++.+..                         ++||+
T Consensus        90 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~  169 (186)
T d1f6ba_          90 CADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVL  169 (186)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTT
T ss_pred             ccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCC
Confidence            99999998888877777777777899999999999999888888777665                         46999


Q ss_pred             cCCCHHHHHHHHHHHH
Q psy11510        154 VKLNKQSKFQVLLNEV  169 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~i  169 (171)
                      +|+|++++|+++++++
T Consensus       170 tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         170 KRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             TTBSHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHhh
Confidence            9999999999998764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.7e-24  Score=147.51  Aligned_cols=128  Identities=24%  Similarity=0.460  Sum_probs=114.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChh
Q psy11510         40 VVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKR  103 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~  103 (171)
                      ||+++|++|||||||++++.+                ....++...+||++|...+...++.++..++++++++|.++..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~   81 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE   81 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence            899999999999999999998                4455778899999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------------------HhhhccCCCHHHHHH
Q psy11510        104 RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------------------EKATKVKLNKQSKFQ  163 (171)
Q Consensus       104 s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------------------~~sa~~~~~v~~~f~  163 (171)
                      ++.....++....+.....+.|+++++||.|++...+..++.+..                    ++||++|+|++++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~  161 (166)
T d2qtvb1          82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQ  161 (166)
T ss_dssp             GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHH
T ss_pred             hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHH
Confidence            999988888888777777889999999999999887877776664                    459999999999999


Q ss_pred             HHHH
Q psy11510        164 VLLN  167 (171)
Q Consensus       164 ~l~~  167 (171)
                      +|++
T Consensus       162 ~l~~  165 (166)
T d2qtvb1         162 WLSQ  165 (166)
T ss_dssp             HHTT
T ss_pred             HHhC
Confidence            9875

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.91  E-value=2.2e-23  Score=145.33  Aligned_cols=134  Identities=34%  Similarity=0.587  Sum_probs=118.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc----------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM----------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA  100 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~----------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~  100 (171)
                      +.+||+++|.+|||||||++++.+                ...+.+.+.+||.+|.+.....+...+..++++++++|+.
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC   83 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence            579999999999999999999988                4556788999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------------HhhhccCCCHHHHHHHHHH
Q psy11510        101 DKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       101 ~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      +..++.....++............|+++++||.|+.+.....++....             ++||++|.||+++|++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~  163 (169)
T d1upta_          84 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE  163 (169)
T ss_dssp             CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             hcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999998888877777777777889999999999999877776666543             6699999999999999998


Q ss_pred             HHh
Q psy11510        168 EVS  170 (171)
Q Consensus       168 ~i~  170 (171)
                      .+-
T Consensus       164 ~l~  166 (169)
T d1upta_         164 TLK  166 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=3.6e-24  Score=153.60  Aligned_cols=134  Identities=17%  Similarity=0.317  Sum_probs=108.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSAD  101 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~  101 (171)
                      +.+||+++|+.|||||||++++..               +....+.+++||++|++.++..|..+++.++++++++|+++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGSGVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSE   80 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSSCCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGG
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCCCCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeeccc
Confidence            478999999999999999999987               34567789999999999999999999999999999999877


Q ss_pred             hh----------hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC------------------CCCHHHHHHHH-----
Q psy11510        102 KR----------RLEDCARELHELLQEERLAGATLLVFANKQDIEG------------------ALTPEDIKNVS-----  148 (171)
Q Consensus       102 ~~----------s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~------------------~~~~~~~~~~~-----  148 (171)
                      ..          .+.+...++..+++.....+.|+++++||+|+..                  ..+.+....+.     
T Consensus        81 ~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~  160 (200)
T d2bcjq2          81 YDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFV  160 (200)
T ss_dssp             GGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHH
Confidence            43          3444455566666777778999999999999732                  11222223322     


Q ss_pred             -------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        149 -------------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       149 -------------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                                   ++||++|.||+++|+.+.+.|+
T Consensus       161 ~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         161 DLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  195 (200)
T ss_dssp             TTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence                         4699999999999999988775

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.2e-24  Score=153.60  Aligned_cols=134  Identities=19%  Similarity=0.361  Sum_probs=104.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc--------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM--------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK  102 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~--------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~  102 (171)
                      +.+||+++|++|||||||++++..              ++.+.+.+.+||++|++.++..|..++++++++++++|.++.
T Consensus         1 r~iKivllG~~~vGKTsll~r~~f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMRIIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEF   80 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCc
Confidence            468999999999999999999965              456778899999999999999999999999999999999873


Q ss_pred             ----------hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC------------------CCCHHHHHHHH------
Q psy11510        103 ----------RRLEDCARELHELLQEERLAGATLLVFANKQDIEG------------------ALTPEDIKNVS------  148 (171)
Q Consensus       103 ----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~------------------~~~~~~~~~~~------  148 (171)
                                .++++...++..+++.....++|+++++||+|+.+                  +.+.+...++.      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~  160 (200)
T d1zcba2          81 DQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRG  160 (200)
T ss_dssp             TCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHT
T ss_pred             ceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHH
Confidence                      45677778888888888888999999999999732                  12223333332      


Q ss_pred             -------------HhhhccCCCHHHHHHHHHHHHh
Q psy11510        149 -------------EKATKVKLNKQSKFQVLLNEVS  170 (171)
Q Consensus       149 -------------~~sa~~~~~v~~~f~~l~~~i~  170 (171)
                                   ++||+++.||+++|+.+.+.|+
T Consensus       161 ~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~  195 (200)
T d1zcba2         161 KRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL  195 (200)
T ss_dssp             TCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHH
Confidence                         3699999999999999877765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=9.2e-23  Score=149.64  Aligned_cols=101  Identities=25%  Similarity=0.481  Sum_probs=89.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCCh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADK  102 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~  102 (171)
                      ++.+||+++|++|||||||++++..             +..+++.+++||++|++.++..|..++++++++++|+|+++.
T Consensus         4 k~~~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~   83 (221)
T d1azta2           4 RATHRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSY   83 (221)
T ss_dssp             HHSEEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGG
T ss_pred             hhcCEEEEECCCCCCHHHHHHHHhcCCcCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEcccc
Confidence            4679999999999999999999976             455788999999999999999999999999999999998753


Q ss_pred             ----------hhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510        103 ----------RRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus       103 ----------~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                                .++.+...++..+++.....++|+++++||+|+.
T Consensus        84 ~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~  127 (221)
T d1azta2          84 NMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  127 (221)
T ss_dssp             GCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence                      4566777778888888888899999999999984

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.2e-21  Score=138.70  Aligned_cols=126  Identities=17%  Similarity=0.168  Sum_probs=92.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH--------HHHHhhhCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS--------YWRNYFEST   90 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~   90 (171)
                      -.|+++|.+|||||||++++.+                    ....+..+.+||+||......        ....++.++
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~a   85 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV   85 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccccc
Confidence            4799999999999999999997                    334557889999999754322        233456789


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------HhhhccCCCHHH
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------EKATKVKLNKQS  160 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------~~sa~~~~~v~~  160 (171)
                      |++++|+|++++.+..  ..++...++.. ..++|+++|+||+|+...  .++..+..          ..||++|.|+++
T Consensus        86 d~il~v~D~~~~~~~~--~~~i~~~l~~~-~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~  160 (178)
T d1wf3a1          86 NAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKY--PEEAMKAYHELLPEAEPRMLSALDERQVAE  160 (178)
T ss_dssp             SEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSS--HHHHHHHHHHTSTTSEEEECCTTCHHHHHH
T ss_pred             cceeeeechhhhhccc--ccchhhheecc-ccchhhhhhhcccccccC--HHHHHHHHHhhcccCceEEEecCCCCCHHH
Confidence            9999999998865433  23334444332 357899999999999652  23332322          449999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +++.+++.+
T Consensus       161 L~~~i~~~l  169 (178)
T d1wf3a1         161 LKADLLALM  169 (178)
T ss_dssp             HHHHHHTTC
T ss_pred             HHHHHHHhC
Confidence            999998653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.9e-22  Score=140.40  Aligned_cols=129  Identities=16%  Similarity=0.139  Sum_probs=95.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH--------HHHHhhhCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS--------YWRNYFEST   90 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~~   90 (171)
                      +||+++|++|||||||++++.+                    ....+..+.+||++|......        ....++..+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA   81 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence            7999999999999999999986                    445667889999999543322        233457789


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC---HHHHHHHHHhhhccCCCHHHHHHHHHH
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT---PEDIKNVSEKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~---~~~~~~~~~~sa~~~~~v~~~f~~l~~  167 (171)
                      |++++++|..+..+++....|...+ ... ..++|+++|+||+|+.+...   ........+.||++|.|++++++.|++
T Consensus        82 d~~i~~~d~~~~~~~~~~~~~~~~~-~~~-~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~iSAk~~~gi~~L~~~l~~  159 (161)
T d2gj8a1          82 DRVLFMVDGTTTDAVDPAEIWPEFI-ARL-PAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQ  159 (161)
T ss_dssp             SEEEEEEETTTCCCCSHHHHCHHHH-HHS-CTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             cccceeeccccccchhhhhhhhhhh-hhc-ccccceeeccchhhhhhhHHHHHHhCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            9999999999988776666544333 322 35799999999999865211   111112337799999999999999987


Q ss_pred             HH
Q psy11510        168 EV  169 (171)
Q Consensus       168 ~i  169 (171)
                      .+
T Consensus       160 ~l  161 (161)
T d2gj8a1         160 SM  161 (161)
T ss_dssp             HC
T ss_pred             hC
Confidence            53

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=1.1e-20  Score=131.10  Aligned_cols=123  Identities=20%  Similarity=0.220  Sum_probs=95.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCcc--------ch-hHHHHHhhhC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQK--------SL-RSYWRNYFES   89 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~--------~~-~~~~~~~~~~   89 (171)
                      +||+++|.+|||||||++++.+                    ....+..+.+||+||..        .. .......+.+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   80 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK   80 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence            6899999999999999999987                    44567789999999932        11 1122334678


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH-------HhhhccCCCHHHHH
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS-------EKATKVKLNKQSKF  162 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~-------~~sa~~~~~v~~~f  162 (171)
                      +|++++|+|++++...+...- ...+      ...++++++||.|+.+..+.+++.+..       .+||++|.|+++++
T Consensus        81 ad~ii~v~d~~~~~~~~~~~~-~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~  153 (160)
T d1xzpa2          81 ADIVLFVLDASSPLDEEDRKI-LERI------KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLE  153 (160)
T ss_dssp             CSEEEEEEETTSCCCHHHHHH-HHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHH
T ss_pred             CCEEEEEEeCCCCcchhhhhh-hhhc------ccccceeeeeeccccchhhhHHHHHHhCCCCcEEEEECCCCCCHHHHH
Confidence            999999999998776544321 1222      467899999999999988888777665       56999999999999


Q ss_pred             HHHHHH
Q psy11510        163 QVLLNE  168 (171)
Q Consensus       163 ~~l~~~  168 (171)
                      +.+.++
T Consensus       154 ~~I~ke  159 (160)
T d1xzpa2         154 ESIYRE  159 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=4.4e-20  Score=133.46  Aligned_cols=109  Identities=28%  Similarity=0.329  Sum_probs=88.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------cccCceEEEEEecCCccchh-HHHHHhhhCCCEEEEEEeC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------IMTFRFKLNIWDVGGQKSLR-SYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------~~~~~~~~~i~d~~g~~~~~-~~~~~~~~~~~~ii~v~d~   99 (171)
                      +|+++|++|||||||++++.+                   .+...+.+.+||++|++.++ ..+..++..++++++|+|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~   81 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS   81 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence            699999999999999999987                   23456889999999999886 4678888999999999999


Q ss_pred             CChhh-HHHHHHHHHHHHhcc--ccCCCeEEEEEeCCCCCCCCCHHHHHHHH
Q psy11510        100 ADKRR-LEDCARELHELLQEE--RLAGATLLVFANKQDIEGALTPEDIKNVS  148 (171)
Q Consensus       100 ~~~~s-~~~~~~~~~~i~~~~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~  148 (171)
                      ++..+ +....+++..++...  ...++|+++|+||+|++++.+.+++.+.+
T Consensus        82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l  133 (207)
T d2fh5b1          82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL  133 (207)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHH
Confidence            99766 455556666655422  22468999999999999988888776665

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.4e-20  Score=131.31  Aligned_cols=128  Identities=19%  Similarity=0.162  Sum_probs=89.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccch-------hHHHHHhhhCCCE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSL-------RSYWRNYFESTDG   92 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~~~   92 (171)
                      .|+++|.+|||||||++++.+                    .......+.+||+||....       ....-..+..+++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV   82 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence            489999999999999999986                    2234556889999994321       1123344678999


Q ss_pred             EEEEEeCCChh--hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         93 LIWVVDSADKR--RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        93 ii~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      +++++|.....  .++....++...  .....++|+++|+||+|+.+....+++.+.+        ..||++|.|+++++
T Consensus        83 ~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~  160 (180)
T d1udxa2          83 LLYVLDAADEPLKTLETLRKEVGAY--DPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALK  160 (180)
T ss_dssp             EEEEEETTSCHHHHHHHHHHHHHHH--CHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHH
T ss_pred             hhhhcccccccccchhhhhhhhhcc--ccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHH
Confidence            99999986642  333333333332  1222468999999999997643333343433        45999999999999


Q ss_pred             HHHHHHH
Q psy11510        163 QVLLNEV  169 (171)
Q Consensus       163 ~~l~~~i  169 (171)
                      +.+.+.+
T Consensus       161 ~~i~~~l  167 (180)
T d1udxa2         161 EALHALV  167 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.82  E-value=2.9e-20  Score=131.90  Aligned_cols=129  Identities=13%  Similarity=0.157  Sum_probs=97.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------------cccCceEEEEEecCCccchhHHHHHhhhC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------------IMTFRFKLNIWDVGGQKSLRSYWRNYFES   89 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~   89 (171)
                      .+.++|+++|.+|+|||||++++.+                          ....+..+.++|++|+..+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            3678999999999999999999986                          34456778999999999998888888899


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH---H-HHHHH------------Hhhhc
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE---D-IKNVS------------EKATK  153 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~---~-~~~~~------------~~sa~  153 (171)
                      +|++++|+|+++....+. .+.+..+ .   ..++|+++|+||+|+.+....+   + ..+..            ..||+
T Consensus        83 ~d~~ilv~d~~~g~~~~~-~~~~~~~-~---~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQT-GEHMLIL-D---HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             CCEEEEEEETTTCSCHHH-HHHHHHH-H---HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             ccccccccccccccchhh-hhhhhhh-h---hcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            999999999988643322 1212222 2   2478999999999997632111   1 11211            25999


Q ss_pred             cCCCHHHHHHHHHHHH
Q psy11510        154 VKLNKQSKFQVLLNEV  169 (171)
Q Consensus       154 ~~~~v~~~f~~l~~~i  169 (171)
                      +|.|++++++.+.+.+
T Consensus       158 ~g~gi~eL~~~I~~~l  173 (179)
T d1wb1a4         158 TGFGVDELKNLIITTL  173 (179)
T ss_dssp             TCTTHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcC
Confidence            9999999999998654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=4.6e-20  Score=129.59  Aligned_cols=125  Identities=15%  Similarity=0.204  Sum_probs=89.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccc---------hhHHHHHhhhCC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKS---------LRSYWRNYFEST   90 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~---------~~~~~~~~~~~~   90 (171)
                      .|+++|.+|||||||+++|.+                    .......+..||++|...         +......++..+
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            689999999999999999987                    455677899999999422         222344556789


Q ss_pred             CEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------HhhhccCCCHHHHH
Q psy11510         91 DGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKVKLNKQSKF  162 (171)
Q Consensus        91 ~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~~~~v~~~f  162 (171)
                      |+++++.|.+....... ..++..+ ..   .++|+++|+||+|+.+....+...+..        ..||++|.|+++++
T Consensus        82 d~i~~~~~~~~~~~~~~-~~~~~~l-~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~  156 (171)
T d1mkya1          82 DLVLFVVDGKRGITKED-ESLADFL-RK---STVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTML  156 (171)
T ss_dssp             SEEEEEEETTTCCCHHH-HHHHHHH-HH---HTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHH
T ss_pred             cEEEEeecccccccccc-ccccccc-cc---ccccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHH
Confidence            99999999877554432 2223333 22   368999999999996532222222221        45999999999999


Q ss_pred             HHHHHHH
Q psy11510        163 QVLLNEV  169 (171)
Q Consensus       163 ~~l~~~i  169 (171)
                      +.+++.+
T Consensus       157 ~~i~~~l  163 (171)
T d1mkya1         157 ETIIKKL  163 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            9998765

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.78  E-value=2.5e-18  Score=121.90  Aligned_cols=130  Identities=13%  Similarity=0.118  Sum_probs=90.1

Q ss_pred             CCCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhH------------
Q psy11510         34 QVSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRS------------   81 (171)
Q Consensus        34 ~~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~------------   81 (171)
                      .-++.+||+++|.+|||||||++++.+                    ....+..+.++|++|......            
T Consensus         4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   83 (186)
T d1mkya2           4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNY   83 (186)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhH
Confidence            345679999999999999999999986                    333456678889999643222            


Q ss_pred             HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC--CHHHHHHHH-----------
Q psy11510         82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL--TPEDIKNVS-----------  148 (171)
Q Consensus        82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~-----------  148 (171)
                      .....++.+|++++|+|++.+..-+ ...++..+ ..   .+.|+++|+||+|+....  ..+++.+.+           
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~-~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGITRQ-DQRMAGLM-ER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP  158 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHH-HH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhcCCEEEEeecccccchhh-HHHHHHHH-HH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence            3344567899999999998754322 22222233 22   478999999999986522  233333333           


Q ss_pred             --HhhhccCCCHHHHHHHHHHH
Q psy11510        149 --EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       149 --~~sa~~~~~v~~~f~~l~~~  168 (171)
                        .+||++|.|++++++.+.+.
T Consensus       159 i~~vSa~~g~gv~~L~~~i~~~  180 (186)
T d1mkya2         159 LIFTSADKGWNIDRMIDAMNLA  180 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHH
Confidence              36999999999999998553

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=8.8e-19  Score=123.90  Aligned_cols=125  Identities=15%  Similarity=0.116  Sum_probs=82.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc---------------cccCceEEEEEecCCcc-----------c----hhHHHHHhhhC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM---------------IMTFRFKLNIWDVGGQK-----------S----LRSYWRNYFES   89 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~---------------~~~~~~~~~i~d~~g~~-----------~----~~~~~~~~~~~   89 (171)
                      .|+++|.+|||||||++++.+               .....-.+.++|+||..           .    +........+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKN   81 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccccccccceecccCCceeccccccccccccchhhhhhhhhcccc
Confidence            589999999999999999987               00111235789999941           1    11123344568


Q ss_pred             CCEEEEEEeCCChhhHHHHH---------HHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHH----H--------
Q psy11510         90 TDGLIWVVDSADKRRLEDCA---------RELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNV----S--------  148 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~---------~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~----~--------  148 (171)
                      +|++++|+|++.+.......         ..+.+.+.   ..++|+++|+||+|+...  .++....    .        
T Consensus        82 ~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~  156 (184)
T d2cxxa1          82 IDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKN--VQEVINFLAEKFEVPLSEID  156 (184)
T ss_dssp             CCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSC--HHHHHHHHHHHHTCCGGGHH
T ss_pred             cchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---HcCCCEEEEEeeeehhhh--HHHHHHHHHHHhcccccccC
Confidence            99999999987643322111         11122222   247999999999997642  1222211    1        


Q ss_pred             ----HhhhccCCCHHHHHHHHHHHH
Q psy11510        149 ----EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       149 ----~~sa~~~~~v~~~f~~l~~~i  169 (171)
                          ..||++|.|++++++.+.+.+
T Consensus       157 ~~~~~vSA~~g~gi~~L~~~i~~~l  181 (184)
T d2cxxa1         157 KVFIPISAKFGDNIERLKNRIFEVI  181 (184)
T ss_dssp             HHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence                369999999999999998654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=3e-18  Score=123.30  Aligned_cols=110  Identities=25%  Similarity=0.333  Sum_probs=84.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------cccCceEEEEEecCCccchhHHHHHhh----hCCCEEEEEEe
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------IMTFRFKLNIWDVGGQKSLRSYWRNYF----ESTDGLIWVVD   98 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------~~~~~~~~~i~d~~g~~~~~~~~~~~~----~~~~~ii~v~d   98 (171)
                      .-+|+++|++|||||||++++.+               +...+..+.+||+||++.++..+..++    ..++.+++++|
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd   82 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVD   82 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCCeEEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEE
Confidence            34899999999999999999986               455667789999999998877666554    45689999999


Q ss_pred             CCC-hhhHHHHHHHHHHHH---hccccCCCeEEEEEeCCCCCCCCCHHHHHHH
Q psy11510         99 SAD-KRRLEDCARELHELL---QEERLAGATLLVFANKQDIEGALTPEDIKNV  147 (171)
Q Consensus        99 ~~~-~~s~~~~~~~~~~i~---~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~  147 (171)
                      +.+ ..+++....|+.+++   +.....++|+++|+||+|+.+....+.+.+.
T Consensus        83 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~  135 (209)
T d1nrjb_          83 STVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDA  135 (209)
T ss_dssp             TTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred             EecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcHHHHHHH
Confidence            765 556677666665443   3344578999999999999886665554443

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.75  E-value=4.9e-18  Score=121.76  Aligned_cols=131  Identities=15%  Similarity=0.116  Sum_probs=93.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------------cccCceEEE
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM---------------------------------------------IMTFRFKLN   69 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~---------------------------------------------~~~~~~~~~   69 (171)
                      .++.++|+++|..++|||||++++.+                                             .......++
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            46889999999999999999999974                                             111234589


Q ss_pred             EEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC----HHHHH
Q psy11510         70 IWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT----PEDIK  145 (171)
Q Consensus        70 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~----~~~~~  145 (171)
                      +.|+||+.+|.......+..+|++++|+|+.+........+.+..+ ...  ...+++++.||+|+.+...    .+.+.
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~-~~~--~~~~iiv~inK~D~~d~~~~~~~~~~~~  158 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQIK  158 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHH-HHh--cCccceeeeecccchhhHHHHHHHHHHH
Confidence            9999999999887777788999999999998864223222222222 211  2346888999999976311    12222


Q ss_pred             HHH-----------HhhhccCCCHHHHHHHHHHH
Q psy11510        146 NVS-----------EKATKVKLNKQSKFQVLLNE  168 (171)
Q Consensus       146 ~~~-----------~~sa~~~~~v~~~f~~l~~~  168 (171)
                      +++           ..||++|+|++++++.+.+.
T Consensus       159 ~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         159 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            332           34999999999999888654

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=9.9e-18  Score=121.09  Aligned_cols=134  Identities=17%  Similarity=0.175  Sum_probs=93.9

Q ss_pred             CCCCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cc
Q psy11510         33 PQVSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IM   62 (171)
Q Consensus        33 ~~~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~   62 (171)
                      +..+++++|+++|..++|||||++++++                                                  ..
T Consensus         3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (205)
T d2qn6a3           3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP   82 (205)
T ss_dssp             CCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred             CCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccc
Confidence            3367889999999999999999999975                                                  00


Q ss_pred             cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH
Q psy11510         63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE  142 (171)
Q Consensus        63 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~  142 (171)
                      .....+++.|+||+.+|.......+..+|++++|+|+.+.-.-...++.+..+ ...  .-.|++|+.||+|+.+.....
T Consensus        83 ~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~-~~~--~i~~iIV~vNK~Dl~~~~~~~  159 (205)
T d2qn6a3          83 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVAL-GII--GVKNLIIVQNKVDVVSKEEAL  159 (205)
T ss_dssp             EEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECGGGSCHHHHH
T ss_pred             cceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHH-HHc--CCceeeeccccCCCccchHHH
Confidence            11236899999999999777677778899999999998753112222222222 221  235889999999997632211


Q ss_pred             H----HHHHH-----------HhhhccCCCHHHHHHHHHHHH
Q psy11510        143 D----IKNVS-----------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       143 ~----~~~~~-----------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      +    +.+.+           ..||++|.|++++++.+...+
T Consensus       160 ~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         160 SQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            1    22222           239999999999999887643

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=2e-18  Score=126.65  Aligned_cols=92  Identities=23%  Similarity=0.191  Sum_probs=71.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhHHH
Q psy11510         41 VSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRSYW   83 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~~~   83 (171)
                      |+++|..++|||||+++++.                                     +......+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999975                                     23455679999999999887766


Q ss_pred             HHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         84 RNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        84 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      ...+..+|++++|+|+.+.-.-+. .+.+..+.    ..++|+++|+||+|+.+
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~----~~~~p~iivlNK~D~~~  136 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILR----MYRTPFVVAANKIDRIH  136 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHH----HTTCCEEEEEECGGGST
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhh----cCCCeEEEEEECccCCC
Confidence            666788999999999987543322 22223332    25789999999999865

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.74  E-value=2.1e-18  Score=122.36  Aligned_cols=130  Identities=15%  Similarity=0.077  Sum_probs=84.6

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-------------------c-ccCceEEEEEecCCccc----hhHHHH---HhhhCCCE
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-------------------I-MTFRFKLNIWDVGGQKS----LRSYWR---NYFESTDG   92 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-------------------~-~~~~~~~~i~d~~g~~~----~~~~~~---~~~~~~~~   92 (171)
                      +|+++|.+|||||||++++.+                   . ..+...+.+||+||..+    ...+..   ..+..++.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~   82 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV   82 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence            689999999999999999987                   1 12334688999999522    111222   22456899


Q ss_pred             EEEEEeCCChhhHHH---HHHH-HHHHHhccccCCCeEEEEEeCCCCCCCCC-HHHHHHHH-------HhhhccCCCHHH
Q psy11510         93 LIWVVDSADKRRLED---CARE-LHELLQEERLAGATLLVFANKQDIEGALT-PEDIKNVS-------EKATKVKLNKQS  160 (171)
Q Consensus        93 ii~v~d~~~~~s~~~---~~~~-~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~~~~~~~~-------~~sa~~~~~v~~  160 (171)
                      ++++++.........   ...+ ...........++|+++|+||+|+.+... .+.+.+..       .+||++|.|+++
T Consensus        83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~  162 (185)
T d1lnza2          83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRE  162 (185)
T ss_dssp             EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHH
T ss_pred             hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCCHHH
Confidence            998887655332211   1111 11222233445789999999999976321 12222222       559999999999


Q ss_pred             HHHHHHHHH
Q psy11510        161 KFQVLLNEV  169 (171)
Q Consensus       161 ~f~~l~~~i  169 (171)
                      +++.+++.+
T Consensus       163 L~~~i~~~L  171 (185)
T d1lnza2         163 LLFEVANQL  171 (185)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=2.1e-17  Score=118.04  Aligned_cols=126  Identities=15%  Similarity=0.118  Sum_probs=81.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc------------------cccCceEEEEEecCCccc----------h---hHHHHHhh
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM------------------IMTFRFKLNIWDVGGQKS----------L---RSYWRNYF   87 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~------------------~~~~~~~~~i~d~~g~~~----------~---~~~~~~~~   87 (171)
                      .+|+++|.+|||||||++++.+                  .........+.|++|-..          .   ...+...+
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTR  103 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccchhhhHHhhhhccc
Confidence            4899999999999999999986                  001122234556665221          1   11122334


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHH----HHH---------Hhhhcc
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIK----NVS---------EKATKV  154 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~----~~~---------~~sa~~  154 (171)
                      ..++++++|+|++.+..-.. .+++..+ +.   .++|+++|+||+|+......++..    +.+         ..||++
T Consensus       104 ~~~~~vi~viD~~~~~~~~~-~~~~~~l-~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~  178 (195)
T d1svia_         104 EELKAVVQIVDLRHAPSNDD-VQMYEFL-KY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSET  178 (195)
T ss_dssp             TTEEEEEEEEETTSCCCHHH-HHHHHHH-HH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTT
T ss_pred             cchhhhhhhhhccccccccc-ccccccc-cc---ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCC
Confidence            56899999999976543211 2222223 22   478999999999986533333322    221         448999


Q ss_pred             CCCHHHHHHHHHHHH
Q psy11510        155 KLNKQSKFQVLLNEV  169 (171)
Q Consensus       155 ~~~v~~~f~~l~~~i  169 (171)
                      |.|++++++.+.+.+
T Consensus       179 ~~gi~el~~~i~~~l  193 (195)
T d1svia_         179 KKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=5.6e-16  Score=111.78  Aligned_cols=97  Identities=20%  Similarity=0.176  Sum_probs=77.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc------------------------------------cccCceEEEEEecCCccch
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM------------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~------------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      +++++|+++|..++|||||+++++.                                    +...+..+++.||||+.+|
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence            4789999999999999999999963                                    4566788999999999999


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      .......+..+|++++|+|+.+....+..+- +..+ .   ..++| ++++.||.|+.+
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~-~~~~-~---~~gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTREH-ILLA-R---QVGVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHHHH-HHHH-H---HTTCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHHHH-HHHH-H---HcCCCeEEEEEEecccCC
Confidence            8877777899999999999988765544322 2222 1   24666 677899999865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.63  E-value=7.8e-16  Score=110.34  Aligned_cols=98  Identities=18%  Similarity=0.109  Sum_probs=75.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-----------------------------------cccCceEEEEEecCCccchh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-----------------------------------IMTFRFKLNIWDVGGQKSLR   80 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-----------------------------------~~~~~~~~~i~d~~g~~~~~   80 (171)
                      +++++|+++|..++|||||++++..                                   +...+..+++.|+||+..|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            4789999999999999999999974                                   34556789999999999998


Q ss_pred             HHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         81 SYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        81 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      ......+..+|++++|+|+.+...-+ ..+.+..+..   ....|+|++.||.|+..
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~Q-T~~~~~~a~~---~~~~~iIv~iNK~D~~~  133 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQ-TREHLLLARQ---IGVEHVVVYVNKADAVQ  133 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCCEEEEEECGGGCS
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchh-HHHHHHHHHH---hcCCcEEEEEecccccc
Confidence            87777788999999999999864322 2222222222   13468999999999865

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.58  E-value=3.5e-14  Score=103.44  Aligned_cols=98  Identities=18%  Similarity=0.164  Sum_probs=74.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc----------------------------------------------------cc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM----------------------------------------------------IM   62 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~----------------------------------------------------~~   62 (171)
                      .+..++|+++|..++|||||+.+++.                                                    ..
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            56789999999999999999999964                                                    12


Q ss_pred             cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         63 TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        63 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      .....+++.|+||++.|......-...+|++++|+|+.....-+.. +.+ .+...   .++| ++++.||.|+.+
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~-e~~-~~~~~---~gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR-RHS-YIASL---LGIKHIVVAINKMDLNG  156 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH-HHH-HHHHH---TTCCEEEEEEECTTTTT
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH-HHH-HHHHH---cCCCEEEEEEEcccccc
Confidence            2456789999999999988777778899999999999885332221 211 22222   3544 888999999976

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.54  E-value=1e-14  Score=106.44  Aligned_cols=99  Identities=15%  Similarity=0.176  Sum_probs=74.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccCc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTFR   65 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~~   65 (171)
                      +++++|+++|..++|||||+.+++.                                                  ...+.
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~   80 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   80 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence            4689999999999999999998853                                                  34566


Q ss_pred             eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhH------HHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRL------EDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        66 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      ..+++.|+||+..|......-.+-+|+.++|+|+.+...-      ....+.+.-. ..  ....+++++.||.|+..
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~-~~--~~~~~iIv~iNK~D~~~  155 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILA-KT--MGLDQLIVAVNKMDLTE  155 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHH-HH--TTCTTCEEEEECGGGSS
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHH-HH--hCCCceEEEEEcccCCC
Confidence            7899999999999999888888999999999999885211      1122111111 11  12356888999999975

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=2.7e-14  Score=106.96  Aligned_cols=98  Identities=19%  Similarity=0.180  Sum_probs=80.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccch
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSL   79 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~   79 (171)
                      +..+|+++|..++|||||+.+++.                                     +...+..+++.||||+..|
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDF   84 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSC
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhh
Confidence            445799999999999999999986                                     5567889999999999999


Q ss_pred             hHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCC
Q psy11510         80 RSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGAL  139 (171)
Q Consensus        80 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~  139 (171)
                      .......++-+|+.++|+|+.+.-.-..-.-| ...    ...++|.+++.||.|.+...
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a----~~~~lP~i~fINKmDr~~ad  139 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQA----EKYKVPRIAFANKMDKTGAD  139 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHH----HTTTCCEEEEEECTTSTTCC
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHH----HHcCCCEEEEEecccccccc
Confidence            88888888999999999999987655443332 222    23589999999999998843

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.3e-13  Score=101.44  Aligned_cols=99  Identities=13%  Similarity=0.102  Sum_probs=74.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .+++++|+++|..++|||||+.+++.                                                  +...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            35679999999999999999999963                                                  3446


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhH------HHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRL------EDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~------~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      +..+++.|+||+.+|......-...+|+.++|+|+.....-      .+..+.+.-. ..   -++| ++++.||.|+.+
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~-~~---~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGT
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHH-HH---cCCCeEEEEEECCCCCC
Confidence            78899999999999988878888999999999999864210      0122211111 11   3555 788999999876

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=1.1e-13  Score=102.12  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=77.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------------------------------------cccC
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------------------------------------IMTF   64 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------------------------------------~~~~   64 (171)
                      .+++++|+++|..++|||||+.+++.                                                  ....
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            45688999999999999999999953                                                  3344


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhh---H---HHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRR---L---EDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      ...+++.|+||+..|......-...+|++++|+|+.....   +   .+..+.+ .++..   .++| ++++.||+|++.
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~---~~i~~iiv~iNKmD~~~  176 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLART---QGINHLVVVINKMDEPS  176 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHH---TTCSSEEEEEECTTSTT
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHH---cCCCeEEEEEEcCCCCc
Confidence            5678999999999998877777889999999999987421   1   0122222 22122   2454 789999999976


Q ss_pred             C-CCHHHHHHH---H-------------------HhhhccCCCHHHHH
Q psy11510        138 A-LTPEDIKNV---S-------------------EKATKVKLNKQSKF  162 (171)
Q Consensus       138 ~-~~~~~~~~~---~-------------------~~sa~~~~~v~~~f  162 (171)
                      . ..++...+.   +                   ..||++|+|+.+++
T Consensus       177 ~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         177 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            3 233222111   1                   34899999997653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.49  E-value=2.1e-13  Score=101.74  Aligned_cols=93  Identities=15%  Similarity=0.136  Sum_probs=75.5

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------------------------------------cccCceEEEEEecCCccchhH
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------------------------------------IMTFRFKLNIWDVGGQKSLRS   81 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------------------------------------~~~~~~~~~i~d~~g~~~~~~   81 (171)
                      -+|+++|..++|||||+.+++.                                     +...+.+++++||||+.+|..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            3699999999999999999964                                     455677899999999999998


Q ss_pred             HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCC
Q psy11510         82 YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIE  136 (171)
Q Consensus        82 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~  136 (171)
                      .....++-+|+.++|+|+.+.-.-....-| ....    ..++|.+++.||+|..
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~----~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGTERAW-TVAE----RLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHH----HTTCCEEEEEECGGGC
T ss_pred             hhhhhhcccCceEEEeeccCCccchhHHHH-Hhhh----hccccccccccccccc
Confidence            888889999999999999986554443322 3332    2579999999999974

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=2.1e-13  Score=95.30  Aligned_cols=124  Identities=15%  Similarity=0.135  Sum_probs=79.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccchhHH--HHH-------hhhC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSLRSY--WRN-------YFES   89 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~~~~--~~~-------~~~~   89 (171)
                      -.|+++|.+|||||||++++.+                    .......+..+|++|.......  ...       ....
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGD   85 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhh
Confidence            4589999999999999999986                    2223445567788875433221  111       1235


Q ss_pred             CCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCC-H-HHHHHHH---------HhhhccCCCH
Q psy11510         90 TDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALT-P-EDIKNVS---------EKATKVKLNK  158 (171)
Q Consensus        90 ~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~-~-~~~~~~~---------~~sa~~~~~v  158 (171)
                      ++.++++.|.++...  ....+...+.+    ...|.++|.||+|...... . +......         ..||++|.|+
T Consensus        86 ~~~~l~~~d~~~~~~--~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi  159 (179)
T d1egaa1          86 VELVIFVVEGTRWTP--DDEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNV  159 (179)
T ss_dssp             EEEEEEEEETTCCCH--HHHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred             cceeEEEEecCccch--hHHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCH
Confidence            777788888776432  22233333322    4678999999999866311 1 1111111         4599999999


Q ss_pred             HHHHHHHHHH
Q psy11510        159 QSKFQVLLNE  168 (171)
Q Consensus       159 ~~~f~~l~~~  168 (171)
                      +++++.+++.
T Consensus       160 ~~L~~~i~~~  169 (179)
T d1egaa1         160 DTIAAIVRKH  169 (179)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999998764

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=7.2e-14  Score=107.55  Aligned_cols=107  Identities=19%  Similarity=0.177  Sum_probs=83.1

Q ss_pred             cee-EEEEEeCCCCcHHHHHHHHhc---------------------------------------------------cccC
Q psy11510         37 NVA-VVSLLRNKNGGETLILKKKKM---------------------------------------------------IMTF   64 (171)
Q Consensus        37 ~~~-ki~liG~~~~GKttli~~~~~---------------------------------------------------~~~~   64 (171)
                      ..+ +|+++|..++|||||+.+++.                                                   .+.+
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            445 699999999999999999974                                                   0224


Q ss_pred             ceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC---CCCH
Q psy11510         65 RFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEG---ALTP  141 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~---~~~~  141 (171)
                      ...+++.||||+..|.......++-+|++++|+|+.++-..+...-| ....+    .++|.++++||+|...   ..+.
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~-~~a~~----~~~p~i~viNKiDr~~~el~~~~  169 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVINKVDRALLELQVSK  169 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEECHHHHHHTSCCCH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHH-HHHHH----cCCCeEEEEECcccccccHHhhH
Confidence            56799999999999999888889999999999999997666554333 33322    4799999999999854   4566


Q ss_pred             HHHHHHH
Q psy11510        142 EDIKNVS  148 (171)
Q Consensus       142 ~~~~~~~  148 (171)
                      +++.+.+
T Consensus       170 ~~~~~~l  176 (341)
T d1n0ua2         170 EDLYQTF  176 (341)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665554

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.44  E-value=2.1e-13  Score=95.49  Aligned_cols=128  Identities=15%  Similarity=0.063  Sum_probs=73.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCC-ccc-------hhHHHHHh
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGG-QKS-------LRSYWRNY   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g-~~~-------~~~~~~~~   86 (171)
                      ..+..+|+++|.+|||||||++++.+                    ...........+..+ ...       ........
T Consensus        13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (188)
T d1puia_          13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY   92 (188)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred             CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence            56689999999999999999999987                    111122222222222 111       11111111


Q ss_pred             ---hhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHH----HHHHHH----------H
Q psy11510         87 ---FESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPE----DIKNVS----------E  149 (171)
Q Consensus        87 ---~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~----------~  149 (171)
                         ......++.+.+......... ..++..+.    ....++++++||+|+.+.....    ++.+.+          .
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  167 (188)
T d1puia_          93 LEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAV----DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  167 (188)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHH----HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             hhhhhheeEEEEeecccccchhHH-HHHHHHhh----hccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence               123444555556555432222 23333332    2478999999999987632222    222222          3


Q ss_pred             hhhccCCCHHHHHHHHHH
Q psy11510        150 KATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       150 ~sa~~~~~v~~~f~~l~~  167 (171)
                      +||++|.|++++++.|.+
T Consensus       168 vSA~~g~Gid~L~~~i~~  185 (188)
T d1puia_         168 FSSLKKQGVDKLRQKLDT  185 (188)
T ss_dssp             CBTTTTBSHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHH
Confidence            599999999999998854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.32  E-value=1.9e-12  Score=101.72  Aligned_cols=93  Identities=16%  Similarity=0.130  Sum_probs=61.7

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-----------------------cccCceEEEEEecCCccchhHH-----HHHhh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-----------------------IMTFRFKLNIWDVGGQKSLRSY-----WRNYF   87 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-----------------------~~~~~~~~~i~d~~g~~~~~~~-----~~~~~   87 (171)
                      +..++|+++|.+|||||||+|.+.+                       .....-.+.+|||||-......     ....+
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            3579999999999999999999986                       1111223779999996543222     22234


Q ss_pred             hCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCC
Q psy11510         88 ESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDI  135 (171)
Q Consensus        88 ~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl  135 (171)
                      ..+|.++++.|..-..  .+ ...+..+ ..   .++|+++|.||+|.
T Consensus       134 ~~~d~~l~~~~~~~~~--~d-~~l~~~l-~~---~~k~~~~V~nK~D~  174 (400)
T d1tq4a_         134 YEYDFFIIISATRFKK--ND-IDIAKAI-SM---MKKEFYFVRTKVDS  174 (400)
T ss_dssp             GGCSEEEEEESSCCCH--HH-HHHHHHH-HH---TTCEEEEEECCHHH
T ss_pred             hcceEEEEecCCCCCH--HH-HHHHHHH-HH---cCCCEEEEEeCccc
Confidence            5788888887743222  11 1222333 22   47999999999985

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.31  E-value=1.6e-12  Score=94.72  Aligned_cols=101  Identities=12%  Similarity=-0.023  Sum_probs=60.4

Q ss_pred             eEEEEEecCCccchhHHH---HHhh--hCCCEEEEEEeCCC---hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         66 FKLNIWDVGGQKSLRSYW---RNYF--ESTDGLIWVVDSAD---KRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        66 ~~~~i~d~~g~~~~~~~~---~~~~--~~~~~ii~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      ..+.+.|+||+..+....   ....  ...+.+++++|+..   +.++............+   -..|.++|.||+|+..
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~  171 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS  171 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence            347888999987654321   1122  24678899999753   44433322111111111   2689999999999876


Q ss_pred             CCCHHHHHHHH--------------------------------------HhhhccCCCHHHHHHHHHHHH
Q psy11510        138 ALTPEDIKNVS--------------------------------------EKATKVKLNKQSKFQVLLNEV  169 (171)
Q Consensus       138 ~~~~~~~~~~~--------------------------------------~~sa~~~~~v~~~f~~l~~~i  169 (171)
                      ....+......                                      ..||++|+|+++++..+.+..
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            32211111100                                      249999999999998887654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.29  E-value=2.3e-11  Score=90.10  Aligned_cols=101  Identities=14%  Similarity=0.093  Sum_probs=68.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc--------------------cccCceEEEEEecCCccch----h---HHHHHh-
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM--------------------IMTFRFKLNIWDVGGQKSL----R---SYWRNY-   86 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~--------------------~~~~~~~~~i~d~~g~~~~----~---~~~~~~-   86 (171)
                      ....++|+++|.+|+||||++|.+++                    ....+..+.++||||-...    .   .....+ 
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            45789999999999999999999998                    3456678999999994321    1   111111 


Q ss_pred             -hhCCCEEEEEEeCCChh---hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         87 -FESTDGLIWVVDSADKR---RLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        87 -~~~~~~ii~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                       ....|+++||++++...   .-......+..++...  -..++++|.||+|...
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~--~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchh--hhhCEEEEEECcccCC
Confidence             23578999998876531   1222333444443321  1357899999999865

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.6e-11  Score=93.90  Aligned_cols=121  Identities=12%  Similarity=0.130  Sum_probs=72.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      ..+.++|.+.|++|||||||++++..                                                      
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg  130 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG  130 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhccccccccccccccccccc
Confidence            46789999999999999999999975                                                      


Q ss_pred             -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                                 .+..+..+.+.+|.|...-.   ..+...+|.+++|.+....+..+.+..   -+++      .+-++|
T Consensus       131 ~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~---gi~e------~aDi~V  198 (327)
T d2p67a1         131 ASQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GLME------VADLIV  198 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HHHH------HCSEEE
T ss_pred             chhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhch---hhhc------cccEEE
Confidence                       11111222333333321111   123456899999988766544433332   3322      244688


Q ss_pred             EeCCCCCCCCCH----HHHHHHH---------------HhhhccCCCHHHHHHHHHH
Q psy11510        130 ANKQDIEGALTP----EDIKNVS---------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       130 ~nK~Dl~~~~~~----~~~~~~~---------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      .||+|++.....    .+.....               .+||.+|+|++++.+.|.+
T Consensus       199 vNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~  255 (327)
T d2p67a1         199 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID  255 (327)
T ss_dssp             ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred             EEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHH
Confidence            999999873221    2222222               3699999999999998864

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.13  E-value=7.7e-11  Score=89.89  Aligned_cols=121  Identities=9%  Similarity=0.029  Sum_probs=78.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      ..+.++|-+.|++|+|||||+.++..                                                      
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg  127 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG  127 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccc
Confidence            45789999999999999999999986                                                      


Q ss_pred             -----------cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEE
Q psy11510         61 -----------IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVF  129 (171)
Q Consensus        61 -----------~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv  129 (171)
                                 .+..++.+.+.+|.|...-...   ...-+|..++|......+..+.+.   ..++      ..+-++|
T Consensus       128 ~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k---~gil------E~aDi~v  195 (323)
T d2qm8a1         128 VAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIK---KGIF------ELADMIA  195 (323)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CC---TTHH------HHCSEEE
T ss_pred             hhHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhh---hhHh------hhhheee
Confidence                       2233445556666664333222   233499999999988875544332   2222      2466789


Q ss_pred             EeCCCCCCCCCHHH-H----HHHH---------------HhhhccCCCHHHHHHHHHH
Q psy11510        130 ANKQDIEGALTPED-I----KNVS---------------EKATKVKLNKQSKFQVLLN  167 (171)
Q Consensus       130 ~nK~Dl~~~~~~~~-~----~~~~---------------~~sa~~~~~v~~~f~~l~~  167 (171)
                      .||+|+.+...... .    ...+               .+||.+|.|++++.+.+.+
T Consensus       196 vNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~  253 (323)
T d2qm8a1         196 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIED  253 (323)
T ss_dssp             EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHH
Confidence            99999877433211 1    1111               5599999999999998854

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=3.1e-09  Score=79.61  Aligned_cols=67  Identities=16%  Similarity=0.231  Sum_probs=43.6

Q ss_pred             EEEEEecCCccc-------------hhHHHHHhhhCCCEE-EEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510         67 KLNIWDVGGQKS-------------LRSYWRNYFESTDGL-IWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANK  132 (171)
Q Consensus        67 ~~~i~d~~g~~~-------------~~~~~~~~~~~~~~i-i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK  132 (171)
                      .+.++|+||-..             ...+...|..+++.+ ++|.+++...+-.....+.+.+    .....++++|.||
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~----~~~~~r~i~Vltk  201 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITK  201 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHH----CTTCSSEEEEEEC
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHh----CcCCCceeeEEec
Confidence            478999999421             224556677777755 4566676655555544444444    2245789999999


Q ss_pred             CCCCC
Q psy11510        133 QDIEG  137 (171)
Q Consensus       133 ~Dl~~  137 (171)
                      +|..+
T Consensus       202 ~D~~~  206 (299)
T d2akab1         202 LDLMD  206 (299)
T ss_dssp             GGGSC
T ss_pred             ccccc
Confidence            99865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.87  E-value=3.8e-09  Score=79.48  Aligned_cols=67  Identities=18%  Similarity=0.248  Sum_probs=42.5

Q ss_pred             EEEEEecCCccc-------------hhHHHHHhhhCCCEEEEEE-eCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeC
Q psy11510         67 KLNIWDVGGQKS-------------LRSYWRNYFESTDGLIWVV-DSADKRRLEDCARELHELLQEERLAGATLLVFANK  132 (171)
Q Consensus        67 ~~~i~d~~g~~~-------------~~~~~~~~~~~~~~ii~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK  132 (171)
                      .+.++|+||-..             ...+...|+.+++++++++ +......-.....+.+.+    .....++++|.||
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~----~~~~~r~i~Vitk  207 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVITK  207 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEEC
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh----CcCCCeEEEEEec
Confidence            578999999432             2346777889999877765 443322222233333343    2245789999999


Q ss_pred             CCCCC
Q psy11510        133 QDIEG  137 (171)
Q Consensus       133 ~Dl~~  137 (171)
                      +|..+
T Consensus       208 ~D~~~  212 (306)
T d1jwyb_         208 LDLMD  212 (306)
T ss_dssp             TTSSC
T ss_pred             ccccc
Confidence            99854

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.59  E-value=5e-08  Score=73.64  Aligned_cols=63  Identities=16%  Similarity=0.195  Sum_probs=42.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-------cc------------------------------------cCceEEEEEecCC
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-------IM------------------------------------TFRFKLNIWDVGG   75 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-------~~------------------------------------~~~~~~~i~d~~g   75 (171)
                      +||.++|.++||||||++.+.+       ..                                    .....+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            5899999999999999999987       00                                    1124689999999


Q ss_pred             ccchh----HHHHH---hhhCCCEEEEEEeCCC
Q psy11510         76 QKSLR----SYWRN---YFESTDGLIWVVDSAD  101 (171)
Q Consensus        76 ~~~~~----~~~~~---~~~~~~~ii~v~d~~~  101 (171)
                      --...    .+...   .++++|++++|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            43211    12222   2468999999999863

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.47  E-value=5.9e-07  Score=67.09  Aligned_cols=67  Identities=15%  Similarity=0.158  Sum_probs=48.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhcc--------c-----------------------------cCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMI--------M-----------------------------TFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~--------~-----------------------------~~~~~~~i~d~~g~~   77 (171)
                      .+..+||.+||.++||||||++.+++.        .                             .....+.+.|+||.-
T Consensus         7 ~~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           7 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            346799999999999999999999970        0                             012367889999832


Q ss_pred             c----hh---HHHHHhhhCCCEEEEEEeCCC
Q psy11510         78 S----LR---SYWRNYFESTDGLIWVVDSAD  101 (171)
Q Consensus        78 ~----~~---~~~~~~~~~~~~ii~v~d~~~  101 (171)
                      .    -.   ...-..+++||+++.|+|+.+
T Consensus        87 ~gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          87 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccccHHHHHHHhhccceeEEEEeccC
Confidence            1    11   123344789999999999855

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.38  E-value=4.6e-07  Score=67.05  Aligned_cols=63  Identities=14%  Similarity=0.114  Sum_probs=45.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc---------------------------------cccC---ceEEEEEecCCccchhH
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM---------------------------------IMTF---RFKLNIWDVGGQKSLRS   81 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~---------------------------------~~~~---~~~~~i~d~~g~~~~~~   81 (171)
                      .+||-+||.++||||||++.+..                                 .+..   ...+.+.|+||.-.-.+
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            37999999999999999999997                                 0001   12478999999432222


Q ss_pred             ----H---HHHhhhCCCEEEEEEeCC
Q psy11510         82 ----Y---WRNYFESTDGLIWVVDSA  100 (171)
Q Consensus        82 ----~---~~~~~~~~~~ii~v~d~~  100 (171)
                          +   .-..+++||+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                2   223467899999999863

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.23  E-value=4.1e-06  Score=59.30  Aligned_cols=93  Identities=15%  Similarity=0.125  Sum_probs=57.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc---------------------------------------c----------------
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM---------------------------------------I----------------   61 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~---------------------------------------~----------------   61 (171)
                      ++--|+++|+.||||||.+-++..                                       .                
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~   88 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA   88 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHH
Confidence            333468899999999999988875                                       0                


Q ss_pred             ccCceEEEEEecCCccchhHH----HHHh--hhCCCEEEEEEeCCChhh-HHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510         62 MTFRFKLNIWDVGGQKSLRSY----WRNY--FESTDGLIWVVDSADKRR-LEDCARELHELLQEERLAGATLLVFANKQD  134 (171)
Q Consensus        62 ~~~~~~~~i~d~~g~~~~~~~----~~~~--~~~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  134 (171)
                      ...+..+.++||+|.......    +..+  ..+.+-+++|.|+..+.. .+.+..++..+       + +--++.+|.|
T Consensus        89 ~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~-------~-~~~~I~TKlD  160 (207)
T d1ls1a2          89 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV-------G-VTGLVLTKLD  160 (207)
T ss_dssp             HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT-------C-CCEEEEECGG
T ss_pred             hhccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC-------C-CCeeEEeecC
Confidence            113346789999995443321    2222  236788999999877543 33332222222       1 1225678888


Q ss_pred             CCC
Q psy11510        135 IEG  137 (171)
Q Consensus       135 l~~  137 (171)
                      ...
T Consensus       161 e~~  163 (207)
T d1ls1a2         161 GDA  163 (207)
T ss_dssp             GCS
T ss_pred             ccc
Confidence            654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=5.2e-06  Score=59.30  Aligned_cols=20  Identities=20%  Similarity=0.136  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      .++.|--|||||||+++++.
T Consensus         6 ~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           6 TLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEESSSSSCHHHHHHHHH
T ss_pred             EEEeeCCCCCHHHHHHHHHh
Confidence            68899999999999999986

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.18  E-value=2.8e-06  Score=60.39  Aligned_cols=26  Identities=15%  Similarity=0.040  Sum_probs=22.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.++.-|+++|+.||||||.+-++..
T Consensus         8 ~~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           8 PEPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            56778899999999999998877765

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.14  E-value=9.8e-06  Score=57.44  Aligned_cols=96  Identities=14%  Similarity=0.169  Sum_probs=55.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc------------------------------------------------------
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM------------------------------------------------------   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~------------------------------------------------------   60 (171)
                      .+.+.-|+++|+.||||||.+-++..                                                      
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~   88 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE   88 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHH
Confidence            34566788999999999999887776                                                      


Q ss_pred             -cccCceEEEEEecCCccchhH--H----HHHhh--hCCCEEEEEEeCCChhh-HHHHHHHHHHHHhccccCCCeEEEEE
Q psy11510         61 -IMTFRFKLNIWDVGGQKSLRS--Y----WRNYF--ESTDGLIWVVDSADKRR-LEDCARELHELLQEERLAGATLLVFA  130 (171)
Q Consensus        61 -~~~~~~~~~i~d~~g~~~~~~--~----~~~~~--~~~~~ii~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~~p~ivv~  130 (171)
                       ....+..+.++||+|...+..  .    ...+.  -..+-+++|.|++.... .+.+...+..       .++. -++.
T Consensus        89 ~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~-------~~~~-~lI~  160 (211)
T d1j8yf2          89 KFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA-------SKIG-TIII  160 (211)
T ss_dssp             HHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH-------CTTE-EEEE
T ss_pred             HhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc-------cCcc-eEEE
Confidence             012445788999999643321  1    12222  24678899999876543 3333222221       1233 3558


Q ss_pred             eCCCCCCC
Q psy11510        131 NKQDIEGA  138 (171)
Q Consensus       131 nK~Dl~~~  138 (171)
                      ||.|....
T Consensus       161 TKlDet~~  168 (211)
T d1j8yf2         161 TKMDGTAK  168 (211)
T ss_dssp             ECTTSCSC
T ss_pred             ecccCCCc
Confidence            99997653

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=1.4e-05  Score=56.52  Aligned_cols=94  Identities=19%  Similarity=0.187  Sum_probs=59.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------c
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------------------------------------------------------I   61 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------------------------------------------------------~   61 (171)
                      +..-|+++|+.||||||.+-++..                                                       .
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~   84 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM   84 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHH
Confidence            445678999999999999888766                                                       0


Q ss_pred             ccCceEEEEEecCCccchhHH----HHHhh--------hCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEE
Q psy11510         62 MTFRFKLNIWDVGGQKSLRSY----WRNYF--------ESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLV  128 (171)
Q Consensus        62 ~~~~~~~~i~d~~g~~~~~~~----~~~~~--------~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~iv  128 (171)
                      ...+..+.++||+|...+...    ...+.        ...+-+++|+|++... ....+...+..+       +.. -+
T Consensus        85 ~~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~~~-~l  156 (207)
T d1okkd2          85 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-------GLT-GV  156 (207)
T ss_dssp             HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-------CCS-EE
T ss_pred             HHCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-------CCc-eE
Confidence            012456789999995443321    11111        2468889999987644 455555544444       122 35


Q ss_pred             EEeCCCCCCC
Q psy11510        129 FANKQDIEGA  138 (171)
Q Consensus       129 v~nK~Dl~~~  138 (171)
                      +.+|.|....
T Consensus       157 I~TKlDet~~  166 (207)
T d1okkd2         157 IVTKLDGTAK  166 (207)
T ss_dssp             EEECTTSSCC
T ss_pred             EEeccCCCCC
Confidence            6899987653

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=1.9e-05  Score=55.90  Aligned_cols=96  Identities=13%  Similarity=0.102  Sum_probs=59.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-------------------------------------------------------
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-------------------------------------------------------   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-------------------------------------------------------   60 (171)
                      ..+.-|+++|+.||||||.+-++..                                                       
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~   86 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA   86 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence            4456788999999999999988875                                                       


Q ss_pred             cccCceEEEEEecCCccchhH----HHHHh---hh-----CCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEE
Q psy11510         61 IMTFRFKLNIWDVGGQKSLRS----YWRNY---FE-----STDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLL  127 (171)
Q Consensus        61 ~~~~~~~~~i~d~~g~~~~~~----~~~~~---~~-----~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~i  127 (171)
                      ....+..+.++||+|......    ....+   .+     ..+-+++|.|++... ....+...+..+       + +--
T Consensus        87 a~~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-------~-~~~  158 (211)
T d2qy9a2          87 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV-------G-LTG  158 (211)
T ss_dssp             HHHTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS-------C-CCE
T ss_pred             HHHcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc-------C-Cce
Confidence            001245678999999543322    11111   22     257889999987643 344444433333       2 333


Q ss_pred             EEEeCCCCCCCC
Q psy11510        128 VFANKQDIEGAL  139 (171)
Q Consensus       128 vv~nK~Dl~~~~  139 (171)
                      ++.+|.|.....
T Consensus       159 lIlTKlDe~~~~  170 (211)
T d2qy9a2         159 ITLTKLDGTAKG  170 (211)
T ss_dssp             EEEECCTTCTTT
T ss_pred             EEEeecCCCCCc
Confidence            568999886543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.05  E-value=1.4e-06  Score=64.23  Aligned_cols=42  Identities=14%  Similarity=0.214  Sum_probs=33.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-----------c------ccCceEEEEEecCCc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-----------I------MTFRFKLNIWDVGGQ   76 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-----------~------~~~~~~~~i~d~~g~   76 (171)
                      ....++|+++|.+|||||||++++.+           .      -..+-.+.++||||.
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi  167 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGI  167 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEETTTEEEEECCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEECCCCeEEecCCCc
Confidence            55789999999999999999999999           0      011223789999994

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.93  E-value=4e-06  Score=59.98  Aligned_cols=23  Identities=9%  Similarity=0.081  Sum_probs=20.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-..+++|++|||||||++.+..
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHST
T ss_pred             CCeEEEECCCCCCHHHHHHhhcc
Confidence            34679999999999999999986

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.82  E-value=4.5e-06  Score=56.79  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=21.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      +||+++|++|+|||||++.+.+
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999998

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.73  E-value=0.00086  Score=46.96  Aligned_cols=78  Identities=19%  Similarity=0.202  Sum_probs=49.2

Q ss_pred             CceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEE-EEEeCCCCCC-CCCH
Q psy11510         64 FRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLL-VFANKQDIEG-ALTP  141 (171)
Q Consensus        64 ~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~i-vv~nK~Dl~~-~~~~  141 (171)
                      ..+.+.++|+++....  .....+..+|.++++...+ ..++....+....+ ++   .+.|++ +|.||.|..+ ....
T Consensus       110 ~~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~-~~---~~~~~~giv~N~~~~~~~~~~~  182 (237)
T d1g3qa_         110 DKFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVL-KK---AGLAILGFVLNRYGRSDRDIPP  182 (237)
T ss_dssp             GGCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHH-HH---TTCEEEEEEEEEETSCTTCCCH
T ss_pred             hcCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHH-hh---hhhhhhhhhhcccccccchhhh
Confidence            3456788888875433  2334466799999998854 55566665554444 22   467765 7899998755 3455


Q ss_pred             HHHHHHH
Q psy11510        142 EDIKNVS  148 (171)
Q Consensus       142 ~~~~~~~  148 (171)
                      +..+++.
T Consensus       183 ~~~~~~~  189 (237)
T d1g3qa_         183 EAAEDVM  189 (237)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhc
Confidence            5555554

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.72  E-value=1.5e-05  Score=55.46  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .=|+++|.+||||||+.+++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999986

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=97.70  E-value=1.9e-05  Score=57.95  Aligned_cols=78  Identities=12%  Similarity=0.037  Sum_probs=52.7

Q ss_pred             HHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH--------Hhhhcc
Q psy11510         83 WRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS--------EKATKV  154 (171)
Q Consensus        83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~--------~~sa~~  154 (171)
                      ....++.+|+|++|+|+..|.+...  ..+.+++     .++|.++|.||+|+.+....++..++.        ..++.+
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~   81 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVN   81 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeeccc
Confidence            4556889999999999988766532  1233443     368999999999997643333333333        337778


Q ss_pred             CCCHHHHHHHHHH
Q psy11510        155 KLNKQSKFQVLLN  167 (171)
Q Consensus       155 ~~~v~~~f~~l~~  167 (171)
                      +.+..+....+.+
T Consensus        82 ~~~~~~~~~~~~~   94 (273)
T d1puja_          82 GQGLNQIVPASKE   94 (273)
T ss_dssp             CTTGGGHHHHHHH
T ss_pred             CCCccccchhhhh
Confidence            8888777665543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.69  E-value=1.2e-05  Score=54.18  Aligned_cols=26  Identities=8%  Similarity=0.005  Sum_probs=23.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++.++|++.|++||||||+.+.+..
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            35789999999999999999999976

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.67  E-value=1e-05  Score=54.83  Aligned_cols=23  Identities=17%  Similarity=0.427  Sum_probs=21.1

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-+|++.|++|||||||++++..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999987

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=7.6e-06  Score=58.71  Aligned_cols=23  Identities=9%  Similarity=0.052  Sum_probs=20.4

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-..+++|++|||||||++.+..
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC
T ss_pred             cceEEEECCCCccHHHHHHhhcc
Confidence            34567999999999999999998

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=6.9e-05  Score=53.37  Aligned_cols=75  Identities=13%  Similarity=0.085  Sum_probs=53.0

Q ss_pred             hhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHHHHHHH----------HhhhccC
Q psy11510         87 FESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPEDIKNVS----------EKATKVK  155 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~----------~~sa~~~  155 (171)
                      ..+.|.+++|+.+.+|. +...+.+++.....    .++|.++|.||+|+.++...+.+.+..          .+|++++
T Consensus         8 vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~   83 (225)
T d1u0la2           8 VANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTG   83 (225)
T ss_dssp             EESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred             cccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccc
Confidence            46789999999988754 45666666655533    589999999999997632222233222          3489999


Q ss_pred             CCHHHHHHHH
Q psy11510        156 LNKQSKFQVL  165 (171)
Q Consensus       156 ~~v~~~f~~l  165 (171)
                      .+++++...+
T Consensus        84 ~g~~~L~~~l   93 (225)
T d1u0la2          84 MGIEELKEYL   93 (225)
T ss_dssp             TTHHHHHHHH
T ss_pred             hhHhhHHHHh
Confidence            9999987765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.52  E-value=1.6e-05  Score=57.54  Aligned_cols=25  Identities=20%  Similarity=0.163  Sum_probs=22.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+...|++.|++|+|||++++.+..
T Consensus        38 ~p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          38 TPLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHhh
Confidence            3566799999999999999999987

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.49  E-value=2.3e-05  Score=52.61  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=20.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+|+++|++||||||+.+.+..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999976

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00014  Score=52.34  Aligned_cols=25  Identities=12%  Similarity=0.235  Sum_probs=22.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.=+++++|++|+|||||++-+.+
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~g   51 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQR   51 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3556899999999999999999998

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.48  E-value=3.2e-05  Score=53.24  Aligned_cols=24  Identities=17%  Similarity=0.032  Sum_probs=22.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.++|+++|++||||||+.+.+..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999999986

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.46  E-value=3e-05  Score=53.38  Aligned_cols=24  Identities=13%  Similarity=0.003  Sum_probs=22.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++++|+++|++||||||+.+.+..
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            567899999999999999999877

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.42  E-value=4.5e-05  Score=52.81  Aligned_cols=26  Identities=4%  Similarity=0.137  Sum_probs=23.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.+.++|+++|++||||||+.+.+..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999999987

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.41  E-value=5.1e-05  Score=51.08  Aligned_cols=33  Identities=15%  Similarity=0.224  Sum_probs=24.6

Q ss_pred             EE-EEEeCCCCcHHHHHHHHhc-cccCceEEEEEe
Q psy11510         40 VV-SLLRNKNGGETLILKKKKM-IMTFRFKLNIWD   72 (171)
Q Consensus        40 ki-~liG~~~~GKttli~~~~~-~~~~~~~~~i~d   72 (171)
                      || .++|..|||||||++++.. ....+..+.+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik   36 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   36 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            45 5999999999999999997 444444444443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=3.9e-05  Score=51.33  Aligned_cols=21  Identities=24%  Similarity=0.260  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -|.++|.+|||||||++++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            378999999999999999997

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.40  E-value=4.1e-05  Score=52.09  Aligned_cols=22  Identities=14%  Similarity=0.051  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      +||+++|++||||||+.+.+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998876

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.38  E-value=4.3e-05  Score=50.36  Aligned_cols=20  Identities=5%  Similarity=0.047  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |++.|++||||||+++++..
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999999865

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.38  E-value=0.0021  Score=46.69  Aligned_cols=21  Identities=5%  Similarity=0.017  Sum_probs=17.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      +|++-|..|+||||+.-.+..
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~   24 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVA   24 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            577789999999998776655

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.38  E-value=8.1e-05  Score=51.85  Aligned_cols=26  Identities=15%  Similarity=0.079  Sum_probs=22.6

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+..-+++++|++|||||++++.+..
T Consensus        40 r~~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          40 RRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSSSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             ccCCCCeEEEecCCcccHHHHHHHHH
Confidence            34556899999999999999999987

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.34  E-value=5.2e-05  Score=51.82  Aligned_cols=22  Identities=9%  Similarity=0.033  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++|+++|++||||||+.+.+..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999987

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=6.9e-05  Score=51.00  Aligned_cols=22  Identities=14%  Similarity=-0.028  Sum_probs=20.3

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      +||+++|++||||||..+.+..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999876

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.29  E-value=6.7e-05  Score=51.18  Aligned_cols=22  Identities=23%  Similarity=0.068  Sum_probs=20.6

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++|+++|++||||||+.+.+..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999887

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.28  E-value=6.3e-05  Score=50.21  Aligned_cols=21  Identities=10%  Similarity=0.063  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -|++.|++||||||+.+++..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999986

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.28  E-value=9.8e-05  Score=50.81  Aligned_cols=25  Identities=20%  Similarity=0.098  Sum_probs=22.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++..|+++|++||||||+.+++..
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3556889999999999999999976

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=6.1e-05  Score=49.69  Aligned_cols=21  Identities=14%  Similarity=0.157  Sum_probs=19.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .|+++|++||||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999999976

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00021  Score=52.15  Aligned_cols=26  Identities=15%  Similarity=0.021  Sum_probs=22.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+..-++++||++|||||++++.+..
T Consensus        36 r~~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          36 RRRKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             cCccCCcEEECCCCCcHHHHHHHHHH
Confidence            34556899999999999999999987

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=7.8e-05  Score=50.90  Aligned_cols=23  Identities=9%  Similarity=0.030  Sum_probs=21.3

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++|+++|++||||||+.+.+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999999987

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.19  E-value=0.00013  Score=48.81  Aligned_cols=26  Identities=15%  Similarity=0.166  Sum_probs=22.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+.+-|.++|.+||||||+.+.+..
T Consensus         3 ~~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           3 ATQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34568899999999999999988886

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0001  Score=49.57  Aligned_cols=21  Identities=24%  Similarity=0.192  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      +|++.|++|+|||||++.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999997

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.11  E-value=0.0001  Score=49.58  Aligned_cols=21  Identities=14%  Similarity=0.137  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      +|+++|.+||||||+.+.+..
T Consensus         3 ~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998876

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.09  E-value=0.00025  Score=50.03  Aligned_cols=22  Identities=9%  Similarity=-0.093  Sum_probs=20.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.+++.|++|+||||+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3699999999999999999987

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00013  Score=50.10  Aligned_cols=20  Identities=20%  Similarity=0.258  Sum_probs=18.9

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |+|+|++|||||||++++..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999976

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.00019  Score=48.81  Aligned_cols=25  Identities=16%  Similarity=0.263  Sum_probs=22.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++..=|+++|.+||||||+.+++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566899999999999999999976

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.04  E-value=0.00018  Score=48.70  Aligned_cols=33  Identities=15%  Similarity=0.105  Sum_probs=22.8

Q ss_pred             eEEE-EEeCCCCcHHHHHHHHhc-cccCceEEEEE
Q psy11510         39 AVVS-LLRNKNGGETLILKKKKM-IMTFRFKLNIW   71 (171)
Q Consensus        39 ~ki~-liG~~~~GKttli~~~~~-~~~~~~~~~i~   71 (171)
                      +||+ +.|.+||||||+++.+.. .......+...
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~   35 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII   35 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence            3565 569999999999999987 33333333333

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=0.00016  Score=49.32  Aligned_cols=20  Identities=15%  Similarity=0.174  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |+++|++||||||+++.+..
T Consensus         5 ivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999976

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.01  E-value=0.0002  Score=51.11  Aligned_cols=75  Identities=13%  Similarity=0.071  Sum_probs=50.4

Q ss_pred             hhCCCEEEEEEeCCChh-hHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCCCCCHHH-HHHHH-----------Hhhhc
Q psy11510         87 FESTDGLIWVVDSADKR-RLEDCARELHELLQEERLAGATLLVFANKQDIEGALTPED-IKNVS-----------EKATK  153 (171)
Q Consensus        87 ~~~~~~ii~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~~~~~~~-~~~~~-----------~~sa~  153 (171)
                      ..+.|.+++|+++.+|. +...+.+++.....    .+++.++|.||+|+.+....++ +..+.           ..|++
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence            35789999999987754 56666666655532    5899999999999976432222 22222           23788


Q ss_pred             cCCCHHHHHHHH
Q psy11510        154 VKLNKQSKFQVL  165 (171)
Q Consensus       154 ~~~~v~~~f~~l  165 (171)
                      ++.|++++.+.+
T Consensus        84 ~~~gl~~L~~~l   95 (231)
T d1t9ha2          84 DQDSLADIIPHF   95 (231)
T ss_dssp             HHTTCTTTGGGG
T ss_pred             ChhHHHHHHHhh
Confidence            888887765443

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.0002  Score=49.14  Aligned_cols=23  Identities=17%  Similarity=0.075  Sum_probs=20.9

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +..|+++|++||||||..+++..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999976

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.00  E-value=0.00016  Score=48.47  Aligned_cols=21  Identities=5%  Similarity=0.129  Sum_probs=19.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      +|+++|.+||||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999866

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.99  E-value=0.00019  Score=50.49  Aligned_cols=23  Identities=9%  Similarity=-0.062  Sum_probs=20.3

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-++++.|++|+||||+++.+..
T Consensus        36 ~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          36 MPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCchhhHHHHHH
Confidence            34599999999999999998887

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00018  Score=48.00  Aligned_cols=24  Identities=8%  Similarity=0.180  Sum_probs=20.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...=++++|++||||||+.+.+..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            344567799999999999999876

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.98  E-value=0.00025  Score=50.91  Aligned_cols=26  Identities=15%  Similarity=0.028  Sum_probs=22.2

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...+.-|++.|++|+||||+++.+..
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34445699999999999999999987

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00031  Score=53.90  Aligned_cols=26  Identities=15%  Similarity=0.079  Sum_probs=21.5

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+..-++++||++|||||++++.+..
T Consensus        40 r~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          40 RRTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             CSSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             cCCCCCCeEECCCCCCHHHHHHHHHH
Confidence            34556679999999999999987776

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=96.98  E-value=0.0043  Score=44.42  Aligned_cols=72  Identities=10%  Similarity=0.057  Sum_probs=37.0

Q ss_pred             ceEEEEEecCCccchhH-HHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCCC
Q psy11510         65 RFKLNIWDVGGQKSLRS-YWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIEG  137 (171)
Q Consensus        65 ~~~~~i~d~~g~~~~~~-~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~~  137 (171)
                      .+-+.+.|+++...... ........+|.++.+.+. +..++.........+.......+.+ .-++.|+.+...
T Consensus       115 ~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~  188 (269)
T d1cp2a_         115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN  188 (269)
T ss_dssp             TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred             cCCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC
Confidence            34566777776432222 122223457887777765 4555554444433332222223443 346789987755

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.0013  Score=47.21  Aligned_cols=23  Identities=17%  Similarity=0.044  Sum_probs=21.1

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-.+++.|++|+|||++++.+..
T Consensus        42 ~~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHH
Confidence            34699999999999999999998

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0002  Score=49.01  Aligned_cols=20  Identities=20%  Similarity=0.137  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |+++|++|+||+||++++..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999875

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.95  E-value=0.0002  Score=48.20  Aligned_cols=20  Identities=15%  Similarity=-0.082  Sum_probs=18.3

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |++.|.+||||||+++.+..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999999876

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.00021  Score=49.22  Aligned_cols=20  Identities=30%  Similarity=0.305  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |+|+|++|||||||++++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999876

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.94  E-value=0.00024  Score=47.49  Aligned_cols=20  Identities=15%  Similarity=0.150  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |++.|++||||||+.+.+..
T Consensus         7 I~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999976

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.84  E-value=0.0017  Score=48.39  Aligned_cols=22  Identities=18%  Similarity=0.131  Sum_probs=20.8

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+|++.|+.|+||||+++.+..
T Consensus       167 ~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCEEEEeeccccchHHHHHHhh
Confidence            4699999999999999999998

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00029  Score=49.30  Aligned_cols=21  Identities=5%  Similarity=0.104  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      =|+++||+|||||||++++..
T Consensus         4 livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999986

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00017  Score=49.14  Aligned_cols=24  Identities=17%  Similarity=0.039  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +...|.++|.+||||||+.+.+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456788999999999999999976

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.83  E-value=0.00034  Score=50.58  Aligned_cols=24  Identities=17%  Similarity=0.163  Sum_probs=21.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=+++++|++|||||||++-+.+
T Consensus        40 ~Ge~iaivG~sGsGKSTLl~ll~g   63 (253)
T d3b60a1          40 AGKTVALVGRSGSGKSTIASLITR   63 (253)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            445799999999999999999998

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.83  E-value=0.0003  Score=46.90  Aligned_cols=20  Identities=15%  Similarity=0.199  Sum_probs=18.0

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |++.|.+||||||+.+.+..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56669999999999999987

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0036  Score=45.06  Aligned_cols=24  Identities=21%  Similarity=0.101  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-.+++.|++|+|||++++.+..
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHH
Confidence            345699999999999999999997

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.78  E-value=0.0005  Score=46.68  Aligned_cols=26  Identities=12%  Similarity=0.123  Sum_probs=22.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...++-|.+-|++|||||||.+++..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34566799999999999999999987

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.78  E-value=0.0004  Score=47.59  Aligned_cols=26  Identities=19%  Similarity=0.102  Sum_probs=23.9

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++++-|++-|..||||||+++.+..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            56778999999999999999999987

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.77  E-value=0.00054  Score=47.00  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=21.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.--|+++|++||||||+.+.+..
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3444688999999999999999987

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.77  E-value=0.0019  Score=45.21  Aligned_cols=91  Identities=13%  Similarity=0.169  Sum_probs=47.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCc-c--------chhHHHHHhhhCCCEEEEEEe-CCChhhHHHHH
Q psy11510         41 VSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQ-K--------SLRSYWRNYFESTDGLIWVVD-SADKRRLEDCA  109 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~-~--------~~~~~~~~~~~~~~~ii~v~d-~~~~~s~~~~~  109 (171)
                      +.+.|++|+|||-|++.+.+ .......+...+..-- .        ....-+...++.+|.+++  | +..-..-+..+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~i--DDi~~i~~~~~~~  116 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLL--DDVQFLSGKERTQ  116 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEE--ECGGGGTTCHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhhHHHHHhhccchhh--hhhhhhcCchHHH
Confidence            78999999999999999998 2222222222222110 0        011122334566777665  4 21111112223


Q ss_pred             HHHHHHHhccccCCCeEEEEEeCC
Q psy11510        110 RELHELLQEERLAGATLLVFANKQ  133 (171)
Q Consensus       110 ~~~~~i~~~~~~~~~p~ivv~nK~  133 (171)
                      ..+..+++.....+.++++.+++.
T Consensus       117 ~~lf~lin~~~~~~~~iiits~~~  140 (213)
T d1l8qa2         117 IEFFHIFNTLYLLEKQIILASDRH  140 (213)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             HHHHHHHHHHhhccceEEEecCCc
Confidence            333444444444688988887763

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.76  E-value=0.00039  Score=49.92  Aligned_cols=25  Identities=12%  Similarity=0.280  Sum_probs=22.5

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.=.++++|+.|||||||++-+.+
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~g   50 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLER   50 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3556899999999999999999998

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.75  E-value=0.00039  Score=50.23  Aligned_cols=25  Identities=12%  Similarity=0.138  Sum_probs=22.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.=.++++|+.|||||||++-+.+
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~g   62 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQN   62 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhc
Confidence            4556899999999999999999998

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.75  E-value=0.00036  Score=46.95  Aligned_cols=21  Identities=10%  Similarity=0.115  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .|+++|.+||||||+.+.+..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999975

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00083  Score=48.69  Aligned_cols=24  Identities=21%  Similarity=0.108  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-.|++.|++|+|||++++.+..
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcchhHHHHHHH
Confidence            445699999999999999999988

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.72  E-value=0.00041  Score=48.38  Aligned_cols=24  Identities=25%  Similarity=0.228  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.++++|+.|||||||++-+.+
T Consensus        26 ~Gei~~l~G~NGsGKSTLl~~i~g   49 (200)
T d1sgwa_          26 KGNVVNFHGPNGIGKTTLLKTIST   49 (200)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            344678999999999999999998

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00041  Score=49.53  Aligned_cols=24  Identities=13%  Similarity=0.149  Sum_probs=21.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-+.++|+.|||||||++-+.+
T Consensus        25 ~Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          25 EGEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            444689999999999999999988

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.71  E-value=0.00041  Score=49.70  Aligned_cols=21  Identities=19%  Similarity=0.227  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -++++|+.|||||||++-+.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            456899999999999999999

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00048  Score=50.55  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=22.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.=.++++|+.|||||||++-+.+
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhC
Confidence            3455699999999999999999998

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.69  E-value=0.00043  Score=49.34  Aligned_cols=24  Identities=17%  Similarity=0.238  Sum_probs=21.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-+.++|++|||||||++-+.+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          30 EGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCcchhhHhccC
Confidence            344689999999999999998888

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00098  Score=46.65  Aligned_cols=21  Identities=10%  Similarity=0.012  Sum_probs=19.8

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      ++++.|++|+||||+++.+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            589999999999999999987

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.64  E-value=0.00051  Score=47.15  Aligned_cols=22  Identities=9%  Similarity=0.120  Sum_probs=19.7

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      --|+++|++||||||+..++..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3488999999999999999987

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.63  E-value=0.00059  Score=47.57  Aligned_cols=24  Identities=8%  Similarity=0.108  Sum_probs=21.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.++|++-|++||||||..+.+..
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            567889999999999999999987

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.62  E-value=0.00052  Score=49.14  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-+.++|+.|||||||++-+.+
T Consensus        31 ~Ge~~~liGpsGaGKSTLl~~i~G   54 (239)
T d1v43a3          31 DGEFLVLLGPSGCGKTTTLRMIAG   54 (239)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHHc
Confidence            344689999999999999999998

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00061  Score=48.81  Aligned_cols=24  Identities=4%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-+.++|++|||||||++-+.+
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcC
Confidence            344689999999999999999998

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.55  E-value=0.00062  Score=48.14  Aligned_cols=24  Identities=13%  Similarity=0.055  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-.+++.|++|+||||+++.+..
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999999987

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.54  E-value=0.00061  Score=48.11  Aligned_cols=23  Identities=17%  Similarity=0.036  Sum_probs=20.9

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-.+++.|++|+||||+++.+..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHh
Confidence            34699999999999999999987

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0017  Score=47.34  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=34.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc-------------------------cccCceEEEEEecCCcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM-------------------------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~-------------------------~~~~~~~~~i~d~~g~~   77 (171)
                      ..+..-|.++|+.++|||+|++++.+                         .......+-+.||.|-.
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~   96 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG   96 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEeccccc
Confidence            34677889999999999999999998                         23345567889999953

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.51  E-value=0.00042  Score=50.17  Aligned_cols=25  Identities=12%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.=+++++|+.|||||||++-+.+
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHh
Confidence            3556899999999999999999988

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.51  E-value=0.00066  Score=48.62  Aligned_cols=24  Identities=21%  Similarity=0.156  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.+.++|+.|||||||++-+.+
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~g   51 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAG   51 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCChHHHHHHHHhc
Confidence            444689999999999999999998

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.51  E-value=0.00047  Score=49.05  Aligned_cols=24  Identities=21%  Similarity=0.195  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-+.++|+.|||||||++-+.+
T Consensus        25 ~Ge~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          25 SGEYFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             TTCEEEEECCCTHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhc
Confidence            444689999999999999999999

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.50  E-value=0.001  Score=45.80  Aligned_cols=35  Identities=6%  Similarity=0.059  Sum_probs=25.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVG   74 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~   74 (171)
                      -|++-|..||||||+++.+.. ....+..+.++..|
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            488999999999999999987 44444444555443

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.40  E-value=0.00087  Score=47.69  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=19.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      .+++.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578999999999999999876

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.38  E-value=0.017  Score=39.94  Aligned_cols=64  Identities=14%  Similarity=0.067  Sum_probs=36.1

Q ss_pred             eEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHhccccCCCe-EEEEEeCCCCC
Q psy11510         66 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQEERLAGAT-LLVFANKQDIE  136 (171)
Q Consensus        66 ~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-~ivv~nK~Dl~  136 (171)
                      ..+.++|+++....  .....+..+|.+++|.+.. ..++....+.+... ++.   +.+ +-+|.||.+..
T Consensus       110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~-~~~---~~~~~~iv~N~~~~~  174 (232)
T d1hyqa_         110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVA-ERL---GTKVLGVVVNRITTL  174 (232)
T ss_dssp             CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHH-HHH---TCEEEEEEEEEECTT
T ss_pred             cceeeecccccccc--hhHHHhhhhheeeeecccc-ccchhhhhhhhhhh-hhc---ccccccccccccccc
Confidence            34567777775432  2334456799999988854 44455544433322 222   334 45778998643

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.36  E-value=0.00059  Score=48.58  Aligned_cols=24  Identities=13%  Similarity=0.259  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-+.++|+.|+|||||++.+.+
T Consensus        24 ~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          24 AGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            445689999999999999999998

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.36  E-value=0.0009  Score=47.90  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-+.++|+.|+|||||++-+.+
T Consensus        31 ~Gei~~liGpnGaGKSTl~~~i~G   54 (240)
T d1ji0a_          31 RGQIVTLIGANGAGKTTTLSAIAG   54 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhC
Confidence            444678999999999999999999

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=96.33  E-value=0.0024  Score=41.74  Aligned_cols=19  Identities=11%  Similarity=0.172  Sum_probs=15.6

Q ss_pred             EEEeCCCCcHHH-HHHHHhc
Q psy11510         42 SLLRNKNGGETL-ILKKKKM   60 (171)
Q Consensus        42 ~liG~~~~GKtt-li~~~~~   60 (171)
                      +++|+..||||| |++++.+
T Consensus         6 ~i~GpMfsGKTteLi~~~~~   25 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHR   25 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHHHH
Confidence            568999999999 6776655

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0034  Score=44.37  Aligned_cols=23  Identities=13%  Similarity=0.017  Sum_probs=19.9

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...+++.|++|+||||+++.+..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHH
Confidence            33589999999999999998876

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.30  E-value=0.0013  Score=46.62  Aligned_cols=25  Identities=24%  Similarity=0.263  Sum_probs=22.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...-.+++.|++|+|||++++.+..
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHH
Confidence            3455799999999999999999987

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0013  Score=45.60  Aligned_cols=23  Identities=9%  Similarity=0.108  Sum_probs=20.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++-|.+-|..||||||+.+.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999998866

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.29  E-value=0.001  Score=49.25  Aligned_cols=24  Identities=13%  Similarity=0.138  Sum_probs=21.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.++++||+|||||.|.+.+..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            456799999999999999999987

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.28  E-value=0.0011  Score=47.98  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=21.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.+.++|+.|||||||++.+.+
T Consensus        27 ~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          27 AGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            445789999999999999999998

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.26  E-value=0.00057  Score=49.01  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=.+.++|++|||||||++-+.+
T Consensus        30 ~Ge~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          30 NGERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             TTCEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHc
Confidence            445789999999999999999999

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0014  Score=46.50  Aligned_cols=24  Identities=13%  Similarity=-0.054  Sum_probs=21.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-.+++.|++|+||||+++.+..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999999998

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.18  E-value=0.0011  Score=51.65  Aligned_cols=23  Identities=13%  Similarity=0.137  Sum_probs=21.0

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-+|+++||+|||||-|++++..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999987

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.17  E-value=0.0014  Score=46.88  Aligned_cols=24  Identities=17%  Similarity=0.254  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=-+.++|+.|+|||||++-+.+
T Consensus        27 ~Gei~glvG~nGaGKSTLl~~l~G   50 (238)
T d1vpla_          27 EGEIFGLIGPNGAGKTTTLRIIST   50 (238)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            444678999999999999999999

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0021  Score=44.82  Aligned_cols=35  Identities=9%  Similarity=0.064  Sum_probs=25.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC
Q psy11510         41 VSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG   75 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g   75 (171)
                      |++-|..||||||+++.+.. +...++.+.+.+.|+
T Consensus         6 I~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~   41 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPE   41 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            67779999999999999887 444455555555554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.16  E-value=0.046  Score=37.92  Aligned_cols=41  Identities=10%  Similarity=0.021  Sum_probs=28.9

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------cccCceEEEEEecCCcc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------~~~~~~~~~i~d~~g~~   77 (171)
                      +.--++|.|++|+|||+|..++..       ..........+++.+..
T Consensus        35 ~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (254)
T d1pzna2          35 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF   82 (254)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchh
Confidence            344688999999999999999976       11224455666766643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.16  E-value=0.0013  Score=47.38  Aligned_cols=23  Identities=9%  Similarity=0.150  Sum_probs=20.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .=-+.++|+.|||||||++-+.+
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~G   52 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITG   52 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHC
Confidence            33568999999999999999999

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.14  E-value=0.0019  Score=45.04  Aligned_cols=26  Identities=8%  Similarity=-0.005  Sum_probs=23.0

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+..-|.+.|.+|||||||.+.+..
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            45777899999999999999999875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.06  E-value=0.0023  Score=43.50  Aligned_cols=24  Identities=8%  Similarity=0.207  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++-|.+.|..||||||+.+.|..
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            567889999999999999998765

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0014  Score=46.35  Aligned_cols=24  Identities=8%  Similarity=-0.013  Sum_probs=20.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-++++.|++|+||||+++.+..
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            344699999999999999999876

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.04  E-value=0.0011  Score=46.42  Aligned_cols=22  Identities=9%  Similarity=0.019  Sum_probs=19.9

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.+++.|++|+||||+++.+..
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHH
Confidence            3489999999999999999987

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.03  E-value=0.0061  Score=42.63  Aligned_cols=24  Identities=13%  Similarity=0.188  Sum_probs=21.3

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--+++.|++|+|||+|..++..
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            455688999999999999999987

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.87  E-value=0.0025  Score=45.78  Aligned_cols=24  Identities=21%  Similarity=0.145  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-.+++.|++|+|||++++.+..
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceeEEecCCCCCchHHHHHHHH
Confidence            345699999999999999999988

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.85  E-value=0.0092  Score=45.58  Aligned_cols=24  Identities=8%  Similarity=0.084  Sum_probs=21.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.==|++.|+.|+||||.++.+..
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhh
Confidence            344599999999999999999998

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0024  Score=44.06  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=18.5

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      =|++.|++||||+|+.+.+..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            356679999999999999987

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.019  Score=41.27  Aligned_cols=77  Identities=10%  Similarity=-0.034  Sum_probs=46.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHH
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHEL  115 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i  115 (171)
                      ..-=+.+.|++|+|||+|.-++.. ....+..+.++|+-+.-.-.-....-. +.|-+ +++..   .+.++..+++..+
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gv-d~d~v-~~~~~---~~~E~~~~~i~~l  127 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV-DIDNL-LCSQP---DTGEQALEICDAL  127 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTC-CGGGC-EEECC---SSHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCC-CHHHE-EEecC---CCHHHHHHHHHHH
Confidence            345678999999999999988887 333445567889988543321111111 22333 33443   3456666666666


Q ss_pred             Hhc
Q psy11510        116 LQE  118 (171)
Q Consensus       116 ~~~  118 (171)
                      .+.
T Consensus       128 ~~~  130 (263)
T d1u94a1         128 ARS  130 (263)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            553

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.74  E-value=0.0025  Score=45.38  Aligned_cols=24  Identities=17%  Similarity=0.112  Sum_probs=19.3

Q ss_pred             ceeE-EEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAV-VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~k-i~liG~~~~GKttli~~~~~   60 (171)
                      +... +++.|++|+|||++++.+..
T Consensus        44 ~~~~~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          44 DVNMIYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred             CcceEEEeECCCCCCHHHHHHHHHH
Confidence            3444 44569999999999999997

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0031  Score=43.55  Aligned_cols=20  Identities=10%  Similarity=0.001  Sum_probs=18.5

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |++-|..||||||+++.+..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77889999999999999987

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.60  E-value=0.0044  Score=47.35  Aligned_cols=39  Identities=13%  Similarity=0.131  Sum_probs=30.2

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG   75 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g   75 (171)
                      ..-+++++|.+|+|||++++.+.. .-..+..+.++|..|
T Consensus        49 ~~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~kg   88 (433)
T d1e9ra_          49 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG   88 (433)
T ss_dssp             GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             ccceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCh
Confidence            345799999999999999988776 223345677889887

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.0023  Score=44.79  Aligned_cols=22  Identities=18%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      -.|++-|+.||||||+++.+..
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999987

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.062  Score=36.81  Aligned_cols=25  Identities=4%  Similarity=-0.016  Sum_probs=21.0

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +-...+++.|++|+||||+++.+..
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHH
Confidence            3355599999999999999998765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.49  E-value=0.004  Score=47.11  Aligned_cols=25  Identities=16%  Similarity=0.216  Sum_probs=22.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.-+++++|++|||||-+.+++..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            4566799999999999999999876

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.42  E-value=0.012  Score=42.00  Aligned_cols=21  Identities=10%  Similarity=0.346  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      =+++.|.+|+|||+|+..+..
T Consensus        37 l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            378999999999999988875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.016  Score=40.05  Aligned_cols=41  Identities=15%  Similarity=0.043  Sum_probs=28.6

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------cccCceEEEEEecCCcc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------IMTFRFKLNIWDVGGQK   77 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------~~~~~~~~~i~d~~g~~   77 (171)
                      +.--+++.|++|+|||+|..++..       .....-.+...|+....
T Consensus        33 ~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~   80 (251)
T d1szpa2          33 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF   80 (251)
T ss_dssp             SSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchH
Confidence            344678999999999999999875       12233455566766643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.38  E-value=0.0062  Score=40.54  Aligned_cols=25  Identities=16%  Similarity=0.162  Sum_probs=22.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++..-|++-|+-|+|||||++.+..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHh
Confidence            4566799999999999999999998

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0063  Score=44.94  Aligned_cols=26  Identities=8%  Similarity=0.028  Sum_probs=23.7

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.++=|.+.|++||||||+.+.+..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            56789999999999999999998877

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.34  E-value=0.0041  Score=45.09  Aligned_cols=24  Identities=13%  Similarity=0.160  Sum_probs=20.5

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...-|.++|.+|+|||||++.+.+
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999999999999865

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.33  E-value=0.051  Score=39.09  Aligned_cols=85  Identities=14%  Similarity=0.051  Sum_probs=48.6

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHH
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHE  114 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~  114 (171)
                      ...-=+.+.|++++|||+|.-++.. ....+..+..+|+-+.-+..-....-. +.+- ++++...   +.+++.+.+..
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~Gv-D~d~-il~~~~~---~~E~~~~~~~~  132 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGV-DTDS-LLVSQPD---TGEQALEIADM  132 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTC-CGGG-CEEECCS---SHHHHHHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCC-CHHH-eEEecCC---CHHHHHHHHHH
Confidence            3445578899999999999877766 333445566779998543322212111 2332 2344443   45566555666


Q ss_pred             HHhccccCCCeEEEE
Q psy11510        115 LLQEERLAGATLLVF  129 (171)
Q Consensus       115 i~~~~~~~~~p~ivv  129 (171)
                      +...    +.+.++|
T Consensus       133 l~~~----~~~~liI  143 (269)
T d1mo6a1         133 LIRS----GALDIVV  143 (269)
T ss_dssp             HHHT----TCEEEEE
T ss_pred             HHhc----CCCCEEE
Confidence            6543    3444555

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0052  Score=41.62  Aligned_cols=24  Identities=13%  Similarity=0.185  Sum_probs=20.4

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-=+++.|++|+|||+|..++..
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            334578999999999999999886

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.23  E-value=0.0024  Score=47.48  Aligned_cols=22  Identities=9%  Similarity=0.208  Sum_probs=20.1

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+++++|++|+|||++++++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4799999999999999999864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.09  E-value=0.049  Score=39.14  Aligned_cols=75  Identities=15%  Similarity=0.050  Sum_probs=45.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCCChhhHHHHHHHHHHHHh
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADKRRLEDCARELHELLQ  117 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~  117 (171)
                      -=+.+.|++++|||+|.-++.- ....+..+..+|+-+.-+..- .+.+=-+.|-+ +++..   .+.++..+++..+.+
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~-a~~~Gvd~d~i-~~~~~---~~~E~~~~~~~~l~~  132 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVY-ARALGVNTDEL-LVSQP---DNGEQALEIMELLVR  132 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGC-EEECC---SSHHHHHHHHHHHHT
T ss_pred             eEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHH-HHHhCCCchhE-EEEcC---CCHHHHHHHHHHHHh
Confidence            3567899999999999988877 333445577889988543321 22211123322 33443   445666666666654


Q ss_pred             c
Q psy11510        118 E  118 (171)
Q Consensus       118 ~  118 (171)
                      .
T Consensus       133 ~  133 (268)
T d1xp8a1         133 S  133 (268)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0068  Score=42.44  Aligned_cols=21  Identities=19%  Similarity=0.123  Sum_probs=19.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -|++=|..||||||+++.+..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            578899999999999999987

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.0089  Score=44.14  Aligned_cols=26  Identities=12%  Similarity=0.001  Sum_probs=22.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++.-.++++|++|||||.|.+.+..
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHh
Confidence            33445799999999999999999988

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=94.94  E-value=0.028  Score=37.84  Aligned_cols=78  Identities=9%  Similarity=0.014  Sum_probs=42.0

Q ss_pred             eecccccccCCCCCceeEEEEEeC-CCCcHHHHHHHHhc---c-ccCceEEEEEecCCccch-hHH--------------
Q psy11510         23 YYGMGMLRHRPQVSNVAVVSLLRN-KNGGETLILKKKKM---I-MTFRFKLNIWDVGGQKSL-RSY--------------   82 (171)
Q Consensus        23 ~~~m~~~~~~~~~~~~~ki~liG~-~~~GKttli~~~~~---~-~~~~~~~~i~d~~g~~~~-~~~--------------   82 (171)
                      .+.+...++..+.++.+||.++|+ .++|-+ ++..+..   . ....+.+++.|.+..... ...              
T Consensus         9 ~~~~~~~~~~~~~k~~~kV~I~GA~G~Ig~~-l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~   87 (175)
T d7mdha1           9 TYDLKAEDKTKSWKKLVNIAVSGAAGMISNH-LLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLRE   87 (175)
T ss_dssp             ------------CCCCEEEEEETTTSHHHHH-HHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEE
T ss_pred             ccccccchhhhccCCCcEEEEECCCcHHHHH-HHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccC
Confidence            344444444455668899999997 667755 4445544   2 234678889998874321 111              


Q ss_pred             ------HHHhhhCCCEEEEEEeCCC
Q psy11510         83 ------WRNYFESTDGLIWVVDSAD  101 (171)
Q Consensus        83 ------~~~~~~~~~~ii~v~d~~~  101 (171)
                            ....+.++|.+++.-....
T Consensus        88 ~~~~~~~~~~~~~aDvVvi~ag~~r  112 (175)
T d7mdha1          88 VSIGIDPYEVFEDVDWALLIGAKPR  112 (175)
T ss_dssp             EEEESCHHHHTTTCSEEEECCCCCC
T ss_pred             ccccccchhhccCCceEEEeeccCC
Confidence                  1223568899998865543

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.072  Score=34.02  Aligned_cols=88  Identities=14%  Similarity=0.060  Sum_probs=47.3

Q ss_pred             EEEeCCCCcHHHHHHHHhc-cccCceEEEEE----ecCCcc---------------chhHHHHHhhhCCCEEEEEEeCCC
Q psy11510         42 SLLRNKNGGETLILKKKKM-IMTFRFKLNIW----DVGGQK---------------SLRSYWRNYFESTDGLIWVVDSAD  101 (171)
Q Consensus        42 ~liG~~~~GKttli~~~~~-~~~~~~~~~i~----d~~g~~---------------~~~~~~~~~~~~~~~ii~v~d~~~  101 (171)
                      +++|+..|||||-+-+..+ ....+..+.++    |+....               .........+.++|+|.+    +.
T Consensus         6 li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~I~I----DE   81 (133)
T d1xbta1           6 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALGVAVIGI----DE   81 (133)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCC--------------CEEESSGGGGHHHHHTCSEEEE----SS
T ss_pred             EEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccccCCcceeeecCCCcceeeeeechhhhhhhhcccceEEe----eh
Confidence            5689999999997766555 11111111111    111100               000011233456776554    45


Q ss_pred             hhhHHHHHHHHHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510        102 KRRLEDCARELHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus       102 ~~s~~~~~~~~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      .+-|+.+..+...+..    .+++|++.|-..|-..
T Consensus        82 aQFf~dl~~~~~~~~~----~~~~Viv~GLd~Df~~  113 (133)
T d1xbta1          82 GQFFPDIVEFCEAMAN----AGKTVIVAALDGTFQR  113 (133)
T ss_dssp             GGGCTTHHHHHHHHHH----TTCEEEEECCSBCTTS
T ss_pred             hHHHHHHHHHHHHHHh----cCCcEEEEEecccccc
Confidence            5556666565555543    4899999998888644

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.82  E-value=0.0065  Score=45.33  Aligned_cols=25  Identities=16%  Similarity=-0.056  Sum_probs=22.8

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .+.++|.|=|+.|+||||+++.+..
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999999987

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0014  Score=44.20  Aligned_cols=20  Identities=10%  Similarity=0.140  Sum_probs=18.0

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      .+++|+.|+|||||+..+..
T Consensus        27 tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999986

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.78  E-value=0.1  Score=33.69  Aligned_cols=47  Identities=17%  Similarity=0.310  Sum_probs=27.7

Q ss_pred             HHHhhhCCCEEEEEEeCCChhhHHHHHHH-HHHHHhccccCCCeEEEEEeCCCCCC
Q psy11510         83 WRNYFESTDGLIWVVDSADKRRLEDCARE-LHELLQEERLAGATLLVFANKQDIEG  137 (171)
Q Consensus        83 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~-~~~i~~~~~~~~~p~ivv~nK~Dl~~  137 (171)
                      .....++.|+|.+    +..+-|.....+ +..+ ..   .+++|++.|-..|-..
T Consensus        74 ~~~~~~~~dvI~I----DE~QFf~d~~~~~~~~l-~~---~g~~Viv~GLd~Df~~  121 (141)
T d1xx6a1          74 LKYFEEDTEVIAI----DEVQFFDDEIVEIVNKI-AE---SGRRVICAGLDMDFRG  121 (141)
T ss_dssp             HHHCCTTCSEEEE----CSGGGSCTHHHHHHHHH-HH---TTCEEEEEECSBCTTS
T ss_pred             hhhhcccccEEEE----eehhhccccHHHHHHhh-ee---CCcEEEEEEecccccc
Confidence            3344556787665    455555443322 3333 22   4889999998888654

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=0.0098  Score=41.28  Aligned_cols=21  Identities=10%  Similarity=-0.042  Sum_probs=19.0

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      =|++=|..||||||+++.+..
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999998876

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.53  E-value=0.011  Score=43.98  Aligned_cols=24  Identities=8%  Similarity=-0.076  Sum_probs=22.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..++|.|=|+.|+||||+++.+..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            578999999999999999999998

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.50  E-value=0.011  Score=39.95  Aligned_cols=23  Identities=9%  Similarity=-0.107  Sum_probs=20.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-|++.|++|+||||+.-.+..
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHH
Confidence            45689999999999999998887

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.42  E-value=0.012  Score=40.81  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.2

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .--++|.|++|+|||+|..++..
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            34578999999999999999986

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=94.39  E-value=0.013  Score=44.17  Aligned_cols=24  Identities=8%  Similarity=-0.069  Sum_probs=21.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.-.+++.|++|+|||++...+.+
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHH
Confidence            445899999999999999999998

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.39  E-value=0.0072  Score=43.81  Aligned_cols=19  Identities=16%  Similarity=0.330  Sum_probs=16.7

Q ss_pred             EEEeCCCCcHHHHHHHHhc
Q psy11510         42 SLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        42 ~liG~~~~GKttli~~~~~   60 (171)
                      +++|+.||||||++..+..
T Consensus        28 vlvG~NgsGKS~iL~Ai~~   46 (308)
T d1e69a_          28 AIVGPNGSGKSNIIDAIKW   46 (308)
T ss_dssp             EEECCTTTCSTHHHHHHHH
T ss_pred             EEECCCCCcHHHHHHHHHH
Confidence            7899999999999987743

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.33  E-value=0.013  Score=39.60  Aligned_cols=23  Identities=13%  Similarity=-0.156  Sum_probs=20.5

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..-|++.|++|+||||+.-.+..
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHH
Confidence            45689999999999999999887

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.30  E-value=0.011  Score=43.92  Aligned_cols=24  Identities=13%  Similarity=-0.039  Sum_probs=21.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..++|.|=|+.|+||||+++.+..
T Consensus         3 ~~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           3 TLLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC
T ss_pred             CceEEEEECCcCCCHHHHHHHHHH
Confidence            457899999999999999999987

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.27  E-value=0.012  Score=40.36  Aligned_cols=22  Identities=23%  Similarity=0.151  Sum_probs=19.2

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      +-|.+.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999998865

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.26  E-value=0.013  Score=40.86  Aligned_cols=40  Identities=13%  Similarity=-0.011  Sum_probs=27.8

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc-------cccCceEEEEEecCCc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM-------IMTFRFKLNIWDVGGQ   76 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~-------~~~~~~~~~i~d~~g~   76 (171)
                      +.--+++.|++|+|||+|..++..       .......+...++.+.
T Consensus        36 ~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1v5wa_          36 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT   82 (258)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHH
Confidence            445689999999999999999985       1122334455566653

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.015  Score=39.98  Aligned_cols=22  Identities=14%  Similarity=0.151  Sum_probs=19.0

Q ss_pred             eEEEEEeCCCCcHHHHHHHHhc
Q psy11510         39 AVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        39 ~ki~liG~~~~GKttli~~~~~   60 (171)
                      +-|.+.|..||||||+.+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4577999999999999998765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.18  E-value=0.018  Score=41.92  Aligned_cols=26  Identities=4%  Similarity=-0.056  Sum_probs=22.1

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .++++=|.+-|.+||||||+...+..
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHHH
Confidence            55678899999999999999987754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=0.11  Score=37.75  Aligned_cols=29  Identities=10%  Similarity=0.174  Sum_probs=24.4

Q ss_pred             CCCCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         32 RPQVSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        32 ~~~~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.+-.+.=|++++|+.|+|||+|+..+..
T Consensus        37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             HSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             cccccCCCeeeEeCCCCCCHHHHHHHHHH
Confidence            34445667999999999999999999987

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.94  E-value=0.0087  Score=43.72  Aligned_cols=33  Identities=9%  Similarity=0.079  Sum_probs=21.9

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEe
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWD   72 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d   72 (171)
                      =|.+.|.+||||||+.+.+.. +...+++..+..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~   39 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE   39 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEe
Confidence            499999999999999999987 333344444443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.93  E-value=0.016  Score=42.92  Aligned_cols=20  Identities=20%  Similarity=0.212  Sum_probs=18.0

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      ++++|++|+|||.+.+.+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            55579999999999999998

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.81  E-value=0.02  Score=38.43  Aligned_cols=24  Identities=8%  Similarity=-0.132  Sum_probs=20.7

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ...-|++.|++|+||||+.-.+..
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            345799999999999999988776

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.65  E-value=0.016  Score=43.50  Aligned_cols=22  Identities=9%  Similarity=0.208  Sum_probs=18.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHh
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKK   59 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~   59 (171)
                      +.+. +++|+.|+|||+++..+.
T Consensus        25 ~~l~-~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          25 SNFT-SIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             CSEE-EEECSTTSSHHHHHHHHH
T ss_pred             CCEE-EEECCCCCCHHHHHHHHH
Confidence            4454 578999999999999984

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.62  E-value=0.021  Score=39.20  Aligned_cols=24  Identities=13%  Similarity=-0.056  Sum_probs=20.0

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.--+++.|++|+|||+|..++..
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            445678899999999999988764

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.99  E-value=0.023  Score=41.19  Aligned_cols=18  Identities=17%  Similarity=0.407  Sum_probs=14.5

Q ss_pred             EEEEeCCCCcHHHHH-HHH
Q psy11510         41 VSLLRNKNGGETLIL-KKK   58 (171)
Q Consensus        41 i~liG~~~~GKttli-~~~   58 (171)
                      ++|.|.+|+||||.+ +++
T Consensus        27 ~lV~g~aGSGKTt~l~~ri   45 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRI   45 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHH
Confidence            889999999999654 444

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.89  E-value=0.033  Score=40.96  Aligned_cols=25  Identities=16%  Similarity=0.135  Sum_probs=21.2

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ++.-.++++|++|+|||.+.+.+..
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHHHH
Confidence            3344678889999999999999987

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.031  Score=39.61  Aligned_cols=21  Identities=14%  Similarity=0.249  Sum_probs=18.2

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -.++.|++|+|||+|+-++..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999988765

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.057  Score=38.31  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=17.7

Q ss_pred             ceeEEEEE-eCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLL-RNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~li-G~~~~GKttli~~~~~   60 (171)
                      +..+|+++ |..||||||+.-.+..
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~   42 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAV   42 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            44555554 9999999998776655

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.48  E-value=0.5  Score=33.78  Aligned_cols=24  Identities=13%  Similarity=0.183  Sum_probs=21.1

Q ss_pred             ceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         37 NVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.=|+.++|..|+|||+|+..+..
T Consensus        67 kGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          67 KGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEeeCCCCCCHHHHHHHHHH
Confidence            455899999999999999988875

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.30  E-value=0.024  Score=40.64  Aligned_cols=20  Identities=20%  Similarity=0.235  Sum_probs=15.3

Q ss_pred             EEEEeCCCCcHHHH-HHHHhc
Q psy11510         41 VSLLRNKNGGETLI-LKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttl-i~~~~~   60 (171)
                      ++|+|.+|+||||. ++++..
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHHHHHH
Confidence            68999999999975 455433

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.24  E-value=0.04  Score=38.33  Aligned_cols=21  Identities=14%  Similarity=0.029  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -|.+.|..||||||..+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999999998854

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.98  E-value=0.039  Score=38.03  Aligned_cols=27  Identities=7%  Similarity=-0.000  Sum_probs=23.4

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhcc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKMI   61 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~~   61 (171)
                      ..+.--+++.|++++|||+|+..+...
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHH
Confidence            456678999999999999999998883

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.91  E-value=0.49  Score=33.06  Aligned_cols=38  Identities=8%  Similarity=0.011  Sum_probs=27.8

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecCC
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVGG   75 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~g   75 (171)
                      ..-|++.|+.|+||+.+.+.+.. .......+...|...
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~   61 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVAS   61 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTT
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhh
Confidence            34589999999999999999987 334444455566554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=91.60  E-value=0.052  Score=36.76  Aligned_cols=35  Identities=6%  Similarity=-0.072  Sum_probs=26.7

Q ss_pred             eEEEEEeCC-CCcHHHHHHHHhc-cccCceEEEEEec
Q psy11510         39 AVVSLLRNK-NGGETLILKKKKM-IMTFRFKLNIWDV   73 (171)
Q Consensus        39 ~ki~liG~~-~~GKttli~~~~~-~~~~~~~~~i~d~   73 (171)
                      -|+.+.|-. ||||||+.-.+.. ....+.++-++|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            378899996 9999999988887 4455555666663

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.48  E-value=0.2  Score=31.40  Aligned_cols=64  Identities=9%  Similarity=-0.008  Sum_probs=42.1

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc--cc-cCceEEEEEecCCccchhHHHHHhhhCCCEEEEEEeCC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM--IM-TFRFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA  100 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~--~~-~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~  100 (171)
                      ++.+.|.+-|..|+||+||.+.+..  .. ...-.+.+.|-....+.--....+.+. -+.++|...+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~ri~fva~e~~k~-G~~~iv~~~~   70 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKTELLSLIQDFIGS-GSGLIIPDQW   70 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCHHHHTTHHHHHHT-TCEEEESSCC
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHHHHHHHHHHHHhc-CCEEEEecCC
Confidence            4678999999999999999999987  33 245566777655555544445554444 3344444433

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.27  E-value=0.39  Score=32.42  Aligned_cols=97  Identities=10%  Similarity=-0.013  Sum_probs=51.4

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhc----cccCceEEEEEecCC----ccchhHHHHHhhhC---CCEEEEEEeCCChhh
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKM----IMTFRFKLNIWDVGG----QKSLRSYWRNYFES---TDGLIWVVDSADKRR  104 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~----~~~~~~~~~i~d~~g----~~~~~~~~~~~~~~---~~~ii~v~d~~~~~s  104 (171)
                      .....+++.|++|+|||++...+..    .....--+......|    .+..+.+...+...   ..-=++++|-.+.-+
T Consensus        13 ~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~   92 (198)
T d2gnoa2          13 SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMT   92 (198)
T ss_dssp             CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHHhhCcccCCCEEEEEeCccccc
Confidence            4567999999999999999998887    111111233444443    23334433333222   222244444333222


Q ss_pred             HHHHHHHHHHHHhccccCCCeEEEEEeCCC
Q psy11510        105 LEDCARELHELLQEERLAGATLLVFANKQD  134 (171)
Q Consensus       105 ~~~~~~~~~~i~~~~~~~~~p~ivv~nK~D  134 (171)
                       .+.++-+.++++++ ..+.-++++.|..+
T Consensus        93 -~~aqNaLLK~LEEP-p~~t~fiLit~~~~  120 (198)
T d2gnoa2          93 -QQAANAFLKALEEP-PEYAVIVLNTRRWH  120 (198)
T ss_dssp             -HHHHHHTHHHHHSC-CTTEEEEEEESCGG
T ss_pred             -hhhhhHHHHHHhCC-CCCceeeeccCChh
Confidence             23344456666654 24555666666555

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.93  E-value=0.11  Score=36.80  Aligned_cols=35  Identities=9%  Similarity=0.011  Sum_probs=23.3

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc-cccCceEEEEEecC
Q psy11510         40 VVSLLRNKNGGETLILKKKKM-IMTFRFKLNIWDVG   74 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~-~~~~~~~~~i~d~~   74 (171)
                      -|++.|..|+||||+.-.+.. .-..+.++-+.|+.
T Consensus        10 ~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            456899999999998887776 22223334455544

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.74  E-value=0.47  Score=32.99  Aligned_cols=20  Identities=10%  Similarity=0.361  Sum_probs=18.7

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      .++.|+..+||||+++++..
T Consensus        44 ~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHHH
Confidence            68999999999999999887

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.53  E-value=0.088  Score=37.68  Aligned_cols=26  Identities=15%  Similarity=0.117  Sum_probs=23.3

Q ss_pred             CCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         35 VSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        35 ~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      ..+.--+.+.|++++|||+|++.+..
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHH
Confidence            45677889999999999999999998

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=89.32  E-value=1.1  Score=31.99  Aligned_cols=32  Identities=9%  Similarity=0.141  Sum_probs=24.6

Q ss_pred             cccCCCCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         29 LRHRPQVSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        29 ~~~~~~~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      |.-+.+-.+.=|+.++|..|+|||+|+..+..
T Consensus        58 ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          58 IDAMIPVGRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TTTTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             EeccccccCCceEeeccCCCCChHHHHHHHHh
Confidence            44445555667899999999999999987654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=89.00  E-value=0.12  Score=38.66  Aligned_cols=21  Identities=14%  Similarity=0.129  Sum_probs=17.1

Q ss_pred             EEEEEeCCCCcHHHHHHHHhc
Q psy11510         40 VVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        40 ki~liG~~~~GKttli~~~~~   60 (171)
                      -.++.|++|+||||.+..+..
T Consensus       165 ~~vI~G~pGTGKTt~i~~~l~  185 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKLLA  185 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHHHH
Confidence            578899999999998866543

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.88  E-value=0.35  Score=31.26  Aligned_cols=65  Identities=11%  Similarity=0.037  Sum_probs=38.4

Q ss_pred             ceeEEEEEeC-CCCcHHHHHHHHhc--cc-cCceEEEEEecCCccchhH---------------------HHHHhhhCCC
Q psy11510         37 NVAVVSLLRN-KNGGETLILKKKKM--IM-TFRFKLNIWDVGGQKSLRS---------------------YWRNYFESTD   91 (171)
Q Consensus        37 ~~~ki~liG~-~~~GKttli~~~~~--~~-~~~~~~~i~d~~g~~~~~~---------------------~~~~~~~~~~   91 (171)
                      +++||.++|+ .++|-+....-..+  .. ...+.+.+.|.........                     -....++++|
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad   82 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDAD   82 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccccc
Confidence            6789999997 78996554443333  22 2345566666655322111                     1223467899


Q ss_pred             EEEEEEeCCC
Q psy11510         92 GLIWVVDSAD  101 (171)
Q Consensus        92 ~ii~v~d~~~  101 (171)
                      .+++......
T Consensus        83 vViitaG~~~   92 (154)
T d1y7ta1          83 YALLVGAAPR   92 (154)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEeecCcCC
Confidence            9998765443

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.79  E-value=0.23  Score=32.17  Aligned_cols=40  Identities=10%  Similarity=-0.083  Sum_probs=28.4

Q ss_pred             ceeEEEEEeC-CCCcHHHHHHHHhc---cccCceEEEEEecCCc
Q psy11510         37 NVAVVSLLRN-KNGGETLILKKKKM---IMTFRFKLNIWDVGGQ   76 (171)
Q Consensus        37 ~~~ki~liG~-~~~GKttli~~~~~---~~~~~~~~~i~d~~g~   76 (171)
                      +++||.++|+ .++|.+....-...   .....+.+.++|....
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~   45 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM   45 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccc
Confidence            5789999996 78998866544333   2335678889998764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=88.61  E-value=0.13  Score=35.82  Aligned_cols=20  Identities=15%  Similarity=0.330  Sum_probs=18.8

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      +++.|+..+||||+++++..
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            78999999999999999887

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=88.44  E-value=0.77  Score=29.62  Aligned_cols=37  Identities=11%  Similarity=-0.006  Sum_probs=25.9

Q ss_pred             CceeEEEEEeCCCCcHHHHHHHHhccccCceEEEEEecCC
Q psy11510         36 SNVAVVSLLRNKNGGETLILKKKKMIMTFRFKLNIWDVGG   75 (171)
Q Consensus        36 ~~~~ki~liG~~~~GKttli~~~~~~~~~~~~~~i~d~~g   75 (171)
                      ++..||.++|..++| +++...+.....  .++.++|...
T Consensus         5 ~k~~KI~IIGaG~VG-~~lA~~l~~~~~--~el~L~D~~~   41 (154)
T d1pzga1           5 QRRKKVAMIGSGMIG-GTMGYLCALREL--ADVVLYDVVK   41 (154)
T ss_dssp             SCCCEEEEECCSHHH-HHHHHHHHHHTC--CEEEEECSSS
T ss_pred             cCCCcEEEECCCHHH-HHHHHHHHhCCC--ceEEEEEecc
Confidence            578999999999999 566665554222  2567888654

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.35  E-value=1.4  Score=31.52  Aligned_cols=29  Identities=10%  Similarity=0.107  Sum_probs=23.1

Q ss_pred             CCCCCceeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         32 RPQVSNVAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        32 ~~~~~~~~ki~liG~~~~GKttli~~~~~   60 (171)
                      +.+-.+.=|+.++|.+|+|||+|+..+..
T Consensus        62 l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          62 LVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             ccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            33344667899999999999999887765

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=86.26  E-value=0.16  Score=37.30  Aligned_cols=17  Identities=12%  Similarity=0.175  Sum_probs=14.5

Q ss_pred             EEEEeCCCCcHHHHHHH
Q psy11510         41 VSLLRNKNGGETLILKK   57 (171)
Q Consensus        41 i~liG~~~~GKttli~~   57 (171)
                      -++.|.+|.|||||--.
T Consensus        17 alffGLSGTGKTTLs~~   33 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLSTD   33 (318)
T ss_dssp             EEEEECTTSCHHHHTCB
T ss_pred             EEEEccCCCCccccccC
Confidence            58999999999997643

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.25  E-value=0.14  Score=37.37  Aligned_cols=16  Identities=13%  Similarity=0.175  Sum_probs=13.9

Q ss_pred             EEEEeCCCCcHHHHHH
Q psy11510         41 VSLLRNKNGGETLILK   56 (171)
Q Consensus        41 i~liG~~~~GKttli~   56 (171)
                      -++.|.+|+|||||-.
T Consensus        17 alfFGLSGTGKTTLs~   32 (313)
T d2olra1          17 AVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEECSTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            3799999999999764

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.05  E-value=0.21  Score=31.16  Aligned_cols=23  Identities=13%  Similarity=0.121  Sum_probs=17.6

Q ss_pred             eeEEEEEeCCCCcHHHHHHHHhc
Q psy11510         38 VAVVSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        38 ~~ki~liG~~~~GKttli~~~~~   60 (171)
                      .-..++.++.|+|||+++-.+..
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH
Confidence            34457899999999998866554

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.90  E-value=0.19  Score=36.91  Aligned_cols=17  Identities=12%  Similarity=0.163  Sum_probs=14.6

Q ss_pred             EEEEeCCCCcHHHHHHH
Q psy11510         41 VSLLRNKNGGETLILKK   57 (171)
Q Consensus        41 i~liG~~~~GKttli~~   57 (171)
                      -++.|.+|.|||||--.
T Consensus        17 alfFGLSGTGKTTLs~d   33 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLSAD   33 (323)
T ss_dssp             EEEECCTTSSHHHHHCC
T ss_pred             EEEEccCCCCcccceeC
Confidence            47999999999999843

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.62  E-value=0.44  Score=31.81  Aligned_cols=20  Identities=5%  Similarity=-0.031  Sum_probs=18.4

Q ss_pred             EEEEeCCCCcHHHHHHHHhc
Q psy11510         41 VSLLRNKNGGETLILKKKKM   60 (171)
Q Consensus        41 i~liG~~~~GKttli~~~~~   60 (171)
                      |+++|...+|||.+.+++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            68999999999999999875

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.99  E-value=3.4  Score=26.09  Aligned_cols=36  Identities=17%  Similarity=0.192  Sum_probs=22.3

Q ss_pred             eEEEEEe-CCCCcHHHHHHHHhccccCceEEEEEecCC
Q psy11510         39 AVVSLLR-NKNGGETLILKKKKMIMTFRFKLNIWDVGG   75 (171)
Q Consensus        39 ~ki~liG-~~~~GKttli~~~~~~~~~~~~~~i~d~~g   75 (171)
                      +||.++| ...+|. ++...+......--++.++|+..
T Consensus         1 MKV~IiGaaG~VG~-~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           1 MKVAVLGAAGGIGQ-ALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             CEEEEETTTSHHHH-HHHHHHHHHSCTTCEEEEECSST
T ss_pred             CEEEEEcCCChHHH-HHHHHHHhCCCCCcEEEEecccc
Confidence            5899999 588995 55555433111223477788754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.27  E-value=4.6  Score=25.39  Aligned_cols=58  Identities=12%  Similarity=0.063  Sum_probs=34.1

Q ss_pred             EEEEEeC-CCCcHHHHHHHHhccccCceEEEEEecCCccc------------------hhHHHHHhhhCCCEEEEEEeC
Q psy11510         40 VVSLLRN-KNGGETLILKKKKMIMTFRFKLNIWDVGGQKS------------------LRSYWRNYFESTDGLIWVVDS   99 (171)
Q Consensus        40 ki~liG~-~~~GKttli~~~~~~~~~~~~~~i~d~~g~~~------------------~~~~~~~~~~~~~~ii~v~d~   99 (171)
                      ||.++|. ..+| +++...+..... --++.++|+....-                  ...-+...++++|.+++..-.
T Consensus         2 Kv~IiGA~G~VG-~~~A~~l~~~~~-~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~   78 (144)
T d1mlda1           2 KVAVLGASGGIG-QPLSLLLKNSPL-VSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV   78 (144)
T ss_dssp             EEEEETTTSTTH-HHHHHHHHTCTT-CSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred             eEEEECCCChHH-HHHHHHHHhCCc-cceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc
Confidence            8999996 8999 556666665211 11456677654110                  011223446789988886553

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=80.37  E-value=0.2  Score=30.90  Aligned_cols=19  Identities=16%  Similarity=0.034  Sum_probs=14.9

Q ss_pred             ceeEEEEEeCCCCcHHHHH
Q psy11510         37 NVAVVSLLRNKNGGETLIL   55 (171)
Q Consensus        37 ~~~ki~liG~~~~GKttli   55 (171)
                      +.-.+++.+++|+|||..+
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            4456788899999999544