Psyllid ID: psy11518

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLS
Secondary Structure (PSIPRED)
ccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccccEEEEEccccccEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcc
Coil and Loop (DISEMBL)
KYTLTQTFVTHSHTASVRSVAATSKLaassgadeTVVLYDMVKRkqsgalmqhegtitclkftpegshliscsddgsiaIFRVGSWQLEKLFKKAHkgtavnhisihpsgklalsvgkdktlrtwNLVKGRSAYITNLS
Flexible Loop (DISEMBL)
kytltqtfvthshtasvrsvaatsklaassgadetVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTavnhisihpsgklalsvgkdktlrtwnlvkgrsayitnls
Low Complexity Region (SEG)
KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLS
Disordered region (IsUnstruct)
*********************************ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI****
Disordered Region (DISOPRED)
KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLS
Disordered Region (DISEMBL)
KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLS
Disordered Region (DISPRO)
*YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q5ZKU8	369	p21-activated protein kin	yes	N/A	0.964	0.363	0.547	5e-34
Q9NWT1	392	p21-activated protein kin	yes	N/A	0.971	0.344	0.543	1e-33
Q68FJ6	363	p21-activated protein kin	N/A	N/A	0.920	0.352	0.526	2e-33
Q6TNS2	368	p21-activated protein kin	yes	N/A	0.971	0.366	0.5	3e-33
Q9DCE5	382	p21-activated protein kin	yes	N/A	0.964	0.350	0.532	5e-33
Q5EA99	392	p21-activated protein kin	yes	N/A	0.971	0.344	0.514	5e-32
P20484	468	Protein MAK11 OS=Saccharo	yes	N/A	0.928	0.275	0.321	1e-16
O74453	341	Shk1 kinase-binding prote	yes	N/A	0.920	0.375	0.328	3e-13
Q5RD06	451	POC1 centriolar protein h	no	N/A	0.820	0.252	0.313	2e-11
Q8TC44	478	POC1 centriolar protein h	no	N/A	0.820	0.238	0.313	2e-11

>sp|Q5ZKU8|PK1IP_CHICK p21-activated protein kinase-interacting protein 1-like OS=Gallus gallus GN=PAK1IP1 PE=2 SV=1

 Score =  142 bits (359), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 75/137 (54%), Positives = 97/137 (70%), Gaps = 3/137 (2%)

Query: 2   YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
           +T+T  F  H+HTAS+ +VA  SK   +   DE++ +YDM K+ + GAL+QH GTITCL+
Sbjct: 23  WTVTPDFTHHAHTASLSAVAVNSKYVVTGSRDESIQIYDMRKKVEHGALLQHNGTITCLE 82

Query: 62  FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
           F    +HL+S ++DG I I+    W+  K   KAHKG  V  +SIHPSGKLALSVG DKT
Sbjct: 83  FYGT-AHLLSGAEDGLICIWNTKRWECLKSI-KAHKG-HVTSLSIHPSGKLALSVGTDKT 139

Query: 122 LRTWNLVKGRSAYITNL 138
           LRTWNLV+GRSA+I NL
Sbjct: 140 LRTWNLVEGRSAFIKNL 156

Negatively regulates the PAK1 kinase.
Gallus gallus (taxid: 9031)

>sp|Q9NWT1|PK1IP_HUMAN p21-activated protein kinase-interacting protein 1 OS=Homo sapiens GN=PAK1IP1 PE=1 SV=2

 Score =  141 bits (356), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/138 (54%), Positives = 95/138 (68%), Gaps = 3/138 (2%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           ++TL   F  H+HTAS+ +VA  S+   +   DET+ +YDM K+ + GAL+ H GTITCL
Sbjct: 29  QWTLVADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIEHGALVHHSGTITCL 88

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
           KF     HLIS ++DG I I+    W+  K   KAHKG  V  +SIHPSGKLALSVG DK
Sbjct: 89  KFYG-NRHLISGAEDGLICIWDAKKWECLKSI-KAHKGQ-VTFLSIHPSGKLALSVGTDK 145

Query: 121 TLRTWNLVKGRSAYITNL 138
           TLRTWNLV+GRSA+I N+
Sbjct: 146 TLRTWNLVEGRSAFIKNI 163

Negatively regulates the PAK1 kinase. PAK1 is a member of the PAK kinase family, which have been shown to play a positive role in the regulation of signaling pathways involving MAPK8 and RELA. PAK1 exists as an inactive homodimer, which is activated by binding of small GTPases such as CDC42 to an N-terminal regulatory domain. PAK1IP1 also binds to the N-terminus of PAK1, and inhibits the specific activation of PAK1 by CDC42.

Homo sapiens (taxid: 9606)

>sp|Q68FJ6|PK1IP_XENLA p21-activated protein kinase-interacting protein 1-like OS=Xenopus laevis GN=pak1ip1 PE=2 SV=1

 Score =  140 bits (353), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 95/131 (72%), Gaps = 3/131 (2%)

Query: 8   FVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS 67
           F  H+HTASV  +A  ++  A+   DET+ +YDM K+ + GAL+ H GTITCL+F    +
Sbjct: 34  FTHHAHTASVSVLAVNNRFVATGSRDETIQIYDMKKKVEHGALLHHNGTITCLEFYG-NT 92

Query: 68  HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
           HL+S ++DG I ++    W+ ++ FK AHKG  ++ +SIHPSGKLALSVG DKTLRTWNL
Sbjct: 93  HLLSGAEDGLICVWNTKKWECQQTFK-AHKGQVLS-LSIHPSGKLALSVGTDKTLRTWNL 150

Query: 128 VKGRSAYITNL 138
           V+GRSA+I N+
Sbjct: 151 VEGRSAFIKNI 161

Negatively regulates the PAK1 kinase.

Xenopus laevis (taxid: 8355)

>sp|Q6TNS2|PK1IP_DANRE p21-activated protein kinase-interacting protein 1-like OS=Danio rerio GN=pak1ip1 PE=2 SV=1

 Score =  140 bits (353), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 99/138 (71%), Gaps = 3/138 (2%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           ++T+  TF  H+HTAS+ +V+++++  A+   DET+ LYDM K+ + GAL+ H+GTI+CL
Sbjct: 34  EWTIEPTFTHHAHTASLNAVSSSNQFIATGSKDETIQLYDMCKKTEHGALLHHDGTISCL 93

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
           +F    SHL+S   DG I ++    W+  K   +AHKG  V  +S+HPSGKLALSVG DK
Sbjct: 94  EFYGT-SHLLSGGQDGLICVWSTKKWECLKTI-RAHKG-QVTSLSVHPSGKLALSVGTDK 150

Query: 121 TLRTWNLVKGRSAYITNL 138
           TLRTWNL++GRSA+I N+
Sbjct: 151 TLRTWNLIEGRSAFIKNI 168

Negatively regulates the PAK1 kinase.

Danio rerio (taxid: 7955)

>sp|Q9DCE5|PK1IP_MOUSE p21-activated protein kinase-interacting protein 1 OS=Mus musculus GN=Pak1ip1 PE=2 SV=2

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 95/137 (69%), Gaps = 3/137 (2%)

Query: 2   YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
           +T    F  HSHTAS+  +A+ S+   S   DET+ +YDM ++ + GAL+ H GT+TCLK
Sbjct: 30  WTPVADFTHHSHTASLSVLASNSRYVVSGSKDETIHIYDMKRKVEHGALVHHAGTVTCLK 89

Query: 62  FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
           F     HLIS ++DG I I+ V  W+  K FK AH+G  V  +SIHPSGKLALSVG DKT
Sbjct: 90  FH-GNQHLISGAEDGHICIWDVKRWKCLKTFK-AHRG-HVTFLSIHPSGKLALSVGTDKT 146

Query: 122 LRTWNLVKGRSAYITNL 138
           LRTWNL++GRSA+I N+
Sbjct: 147 LRTWNLIEGRSAFIKNI 163

Negatively regulates the PAK1 kinase. PAK1 is a member of the PAK kinase family, which have been shown to play a positive role in the regulation of signaling pathways involving MAPK8 and RELA. PAK1 exists as an inactive homodimer, which is activated by binding of small GTPases such as CDC42 to an N-terminal regulatory domain. PAK1IP1 also binds to the N-terminus of PAK1, and inhibits the specific activation of PAK1 by CDC42.

Mus musculus (taxid: 10090)

>sp|Q5EA99|PK1IP_BOVIN p21-activated protein kinase-interacting protein 1 OS=Bos taurus GN=PAK1IP1 PE=2 SV=1

 Score =  135 bits (341), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 71/138 (51%), Positives = 92/138 (66%), Gaps = 3/138 (2%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           ++     F  H+HTAS+ +VA  S+   +   DET+ +YDM K+   GALM H GTITCL
Sbjct: 29  RWAPVADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALMHHNGTITCL 88

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
           KF     HLIS ++DG I ++    W+  K   +AHKG  V  +SIHPSG+LALSVG DK
Sbjct: 89  KFHG-NRHLISGAEDGLICVWDARRWECLKSI-RAHKG-HVTFLSIHPSGRLALSVGTDK 145

Query: 121 TLRTWNLVKGRSAYITNL 138
           TLRTWNLV+GRSA+I N+
Sbjct: 146 TLRTWNLVEGRSAFIKNI 163

Negatively regulates the PAK1 kinase. The PAK kinase family have been shown to play a positive role in the regulation of signaling by pathways involving MAPK8 and RELA. PAK1 exists as an inactive homodimer, which is activated by binding of small GTPases such as CDC42 to an N-terminal regulatory domain. PAK1IP1 also binds to the N-terminus of PAK1, and inhibits the specific activation of PAK1 by CDC42.

Bos taurus (taxid: 9913)

>sp|P20484|MAK11_YEAST Protein MAK11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAK11 PE=1 SV=1

 Score = 85.1 bits (209), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 17/146 (11%)

Query: 8   FVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS 67
           F   +H+ S++ +A + +   S   DE + +YD+ KRK+ G L+ H+G+IT L+F+   S
Sbjct: 100 FHFQAHSLSIKCLAVSRRYLVSGSNDEHIRIYDLQKRKELGTLLSHQGSITALQFSHPAS 159

Query: 68  H---------------LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
                           L+S S+D  I ++RV  W+      K H    VN + IHP+ ++
Sbjct: 160 SSEDAAVSKGSKNSKWLLSASEDHKIMVWRVKDWETVGTL-KGHTA-RVNDVDIHPTNRI 217

Query: 113 ALSVGKDKTLRTWNLVKGRSAYITNL 138
           A+SV  D ++R WNL+  R+A +  L
Sbjct: 218 AISVSDDHSIRLWNLMTLRNAAVLKL 243

Essential for cell growth. Plays a role in assembly of 60S pre-ribosomal particles in the nucleolus. Also required for replication of the M1 double-stranded RNA of the L-A virus. This latter function may reflect an enhanced requirement for free 60S ribosomal particles for the translation of viral mRNAs which lack poly-A tails.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O74453|SKB15_SCHPO Shk1 kinase-binding protein 15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=skb15 PE=4 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 9/137 (6%)

Query: 8   FVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGAL-MQHEGTITCLK---FT 63
           ++  +H  ++ ++A      AS+ +DET+ ++D  +  Q   + +  +    C++   FT
Sbjct: 29  WLFEAHEGALTALAVDGIYLASTSSDETIKIFDHTRNVQIADVSVPTDIANACIRDMCFT 88

Query: 64  PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA-HKGTAVNHISIHPSGKLALSVGKDKTL 122
              +HL++C D+G I+++  GSW L    K + HKG  +  I++HPS KLAL+VG D  L
Sbjct: 89  K--NHLLACHDNGQISMWSKGSWLLVHTLKSSSHKG--ITGIAVHPSEKLALTVGGDGKL 144

Query: 123 RTWNLVKGRSAYITNLS 139
           R W+LV+G+   +  LS
Sbjct: 145 RLWDLVRGKGGKVLPLS 161

Interacts with pak1/shk1.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 12  SHTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL 69
           +HTA VRSV  +A  +  A++  D+++ ++ M +++   +L +H   + C KF+P+G  +
Sbjct: 100 AHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLI 159

Query: 70  ISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
           +SCS+D +I I+   + Q    F  +  G A N +  +PSG    S G D+T++ W++
Sbjct: 160 VSCSEDKTIKIWDTTNKQCVNNFSDS-VGFA-NFVDFNPSGTCIASAGSDQTVKVWDV 215

Required for ciliogenesis.

Pongo abelii (taxid: 9601)

>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1 SV=1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 4/118 (3%)

Query: 12  SHTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL 69
           +HTA VRSV  +A  +  A++  D+++ ++ M +++   +L +H   + C KF+P+G  +
Sbjct: 100 AHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPDGRLI 159

Query: 70  ISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
           +SCS+D +I I+   + Q    F  +  G A N +  +PSG    S G D+T++ W++
Sbjct: 160 VSCSEDKTIKIWDTTNKQCVNNFSDS-VGFA-NFVDFNPSGTCIASAGSDQTVKVWDV 215

Required for ciliogenesis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
332031286	497	p21-activated protein kinase-interacting	0.992	0.277	0.608	4e-47
322794796	500	hypothetical protein SINV_07395 [Solenop	0.992	0.276	0.608	3e-46
307175895	498	p21-activated protein kinase-interacting	0.992	0.277	0.601	6e-44
193678963	373	PREDICTED: p21-activated protein kinase-	0.978	0.364	0.625	2e-43
383864157	479	PREDICTED: p21-activated protein kinase-	0.992	0.288	0.579	2e-43
350400307	306	PREDICTED: p21-activated protein kinase-	0.992	0.450	0.565	5e-43
307208694	517	p21-activated protein kinase-interacting	0.992	0.266	0.601	6e-43
380012738	375	PREDICTED: p21-activated protein kinase-	0.992	0.368	0.586	8e-43
328788130	487	PREDICTED: p21-activated protein kinase-	0.992	0.283	0.586	2e-42
340717907	306	PREDICTED: p21-activated protein kinase-	0.992	0.450	0.565	2e-42

>gi|332031286|gb|EGI70814.1| p21-activated protein kinase-interacting protein 1-like protein [Acromyrmex echinatior]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 110/138 (79%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           +Y + ++F THSH +S+R+VA++    AS+GADETV LYDM  R++SG LM H+ TI C+
Sbjct: 33  EYKIEKSFATHSHVSSIRAVASSKYYLASAGADETVCLYDMRYRRESGKLMHHKDTINCI 92

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
            FTPEGSHL +CS+DGSI + R G+WQLEK++  AHKG+AVN ++IHP+GKLALS G+D 
Sbjct: 93  AFTPEGSHLFACSNDGSITVVRCGNWQLEKVWSTAHKGSAVNTLAIHPTGKLALSTGEDG 152

Query: 121 TLRTWNLVKGRSAYITNL 138
            LRTWNL+KGR AY TNL
Sbjct: 153 VLRTWNLIKGRPAYATNL 170

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322794796|gb|EFZ17743.1| hypothetical protein SINV_07395 [Solenopsis invicta]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 84/138 (60%), Positives = 110/138 (79%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           +YT+ ++F TH+H AS+RSVA++    AS+GADET+ LYDM  R++SG L+ H+ TI C+
Sbjct: 33  EYTIEKSFATHNHIASIRSVASSKYHLASAGADETICLYDMRFRRESGKLVHHKDTINCI 92

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
            FTPEGSHL SCS+DGSI+  R G+WQLEK++  AHKG+AVN ++IHP+GKLALS G+D 
Sbjct: 93  AFTPEGSHLFSCSNDGSISAVRCGNWQLEKVWPTAHKGSAVNTLAIHPTGKLALSTGQDG 152

Query: 121 TLRTWNLVKGRSAYITNL 138
            LRTWNL+KGR AY  NL
Sbjct: 153 VLRTWNLIKGRQAYAINL 170

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175895|gb|EFN65710.1| p21-activated protein kinase-interacting protein 1-like [Camponotus floridanus]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/138 (60%), Positives = 105/138 (76%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           +Y + ++F THSH AS+RSV++     AS+GADETV LYDM  R++S  LM H+ TI C+
Sbjct: 33  EYNIEKSFATHSHVASIRSVSSNKYYLASAGADETVCLYDMRSRRESIKLMHHKDTINCV 92

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
            FTP+GSHL +CS DGSI+  R G+WQL+K +  AHKG+AVN  +IHP+GKLALS G+D 
Sbjct: 93  AFTPDGSHLFTCSSDGSISAIRCGNWQLDKHWLTAHKGSAVNIFAIHPTGKLALSTGEDG 152

Query: 121 TLRTWNLVKGRSAYITNL 138
            LRTWNLVKGR AY TNL
Sbjct: 153 VLRTWNLVKGRQAYATNL 170

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193678963|ref|XP_001952263.1| PREDICTED: p21-activated protein kinase-interacting protein 1-like [Acyrthosiphon pisum]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 107/136 (78%)

Query: 4   LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
           L Q+F  H H AS+RSV+ +SK   SS  DET+ +Y+MV+R     ++QH GT+T L FT
Sbjct: 32  LVQSFNDHVHQASIRSVSCSSKYMVSSSTDETIEVYNMVRRCHIHTILQHSGTVTSLAFT 91

Query: 64  PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLR 123
           P+ SHLIS SDDGSIA+F  G+W+L+KL+ KAHKG+AV+ +++HPSGKLALSVGKDKTLR
Sbjct: 92  PDESHLISTSDDGSIAMFETGTWKLKKLWDKAHKGSAVSFLAVHPSGKLALSVGKDKTLR 151

Query: 124 TWNLVKGRSAYITNLS 139
           TWNLVKGR AY TN S
Sbjct: 152 TWNLVKGRPAYTTNQS 167

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864157|ref|XP_003707546.1| PREDICTED: p21-activated protein kinase-interacting protein 1-like [Megachile rotundata] gi|383866436|ref|XP_003708676.1| PREDICTED: p21-activated protein kinase-interacting protein 1-like [Megachile rotundata]

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/138 (57%), Positives = 104/138 (75%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           +Y + +TF TH+HT+SVRSVA+     AS GAD++V LYDM  R +SG LM H  T+ C+
Sbjct: 27  EYKMERTFATHNHTSSVRSVASDKHYLASGGADDSVYLYDMRYRIESGRLMHHNDTVNCV 86

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
            FTPE SHL +CS+DG+IA  + G+WQ+EK ++KAHKG  VN ++IHP+GK+ALS G D 
Sbjct: 87  AFTPEASHLFTCSNDGTIAAIKCGNWQMEKHWQKAHKGLGVNTLAIHPTGKIALSTGADG 146

Query: 121 TLRTWNLVKGRSAYITNL 138
            LRTWNL+KGR AY TNL
Sbjct: 147 ILRTWNLIKGRQAYATNL 164

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400307|ref|XP_003485793.1| PREDICTED: p21-activated protein kinase-interacting protein 1-like [Bombus impatiens]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 78/138 (56%), Positives = 104/138 (75%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           +Y + ++F THSH +S+RSVA+   + AS GAD++V LYD+  R + G LM H  T+ C+
Sbjct: 27  EYNMVKSFATHSHVSSIRSVASNKNILASGGADDSVYLYDLHNRVEFGRLMHHNDTVNCI 86

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
            FTP+GSHL SCS DG+IA  R G+WQ EK ++K+HKG+AVN ++IHP+GK+ALS G D 
Sbjct: 87  AFTPDGSHLFSCSSDGTIAAIRCGNWQTEKHWQKSHKGSAVNTLAIHPTGKIALSTGADG 146

Query: 121 TLRTWNLVKGRSAYITNL 138
            LRTWNL+KGR AY TNL
Sbjct: 147 ILRTWNLIKGRQAYATNL 164

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208694|gb|EFN85984.1| p21-activated protein kinase-interacting protein 1-like [Harpegnathos saltator]

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 83/138 (60%), Positives = 104/138 (75%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           +Y + ++F THSH AS+RSV ++    AS+GAD+ V LYD+  RK++G LM H  TI CL
Sbjct: 34  EYKVEKSFATHSHVASIRSVTSSKNYLASAGADDIVCLYDLRNRKETGKLMFHNDTINCL 93

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
            FTPE SHL +CS+DGSIA  R G+WQ+EK ++KAHKG AVN ++IHP+GKLALS G D 
Sbjct: 94  AFTPEASHLFTCSNDGSIAAVRCGNWQIEKHWQKAHKGLAVNTLAIHPTGKLALSTGMDG 153

Query: 121 TLRTWNLVKGRSAYITNL 138
            LRTWNLVKGR AY  NL
Sbjct: 154 ALRTWNLVKGRQAYAINL 171

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012738|ref|XP_003690434.1| PREDICTED: p21-activated protein kinase-interacting protein 1-like, partial [Apis florea]

 Score =  178 bits (451), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 101/138 (73%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           +Y + +TF THSH  S+RSVA+     AS GAD++V LYD+  R +SG L+ H  TI C+
Sbjct: 27  EYKMEKTFATHSHANSIRSVASNKHYLASGGADDSVYLYDLRHRIESGRLVHHNDTINCI 86

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
            FTPE SHL SCS+DG+IA  R G+WQLEK ++K HKG AVN ++IHP+GK+ALS G D 
Sbjct: 87  AFTPEASHLFSCSNDGTIAAIRCGNWQLEKHWQKPHKGLAVNTLAIHPTGKIALSTGADG 146

Query: 121 TLRTWNLVKGRSAYITNL 138
            LRTWNLVKGR AY  NL
Sbjct: 147 ILRTWNLVKGRQAYAINL 164

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788130|ref|XP_395312.3| PREDICTED: p21-activated protein kinase-interacting protein 1-like [Apis mellifera]

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/138 (58%), Positives = 103/138 (74%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           +Y + +TF THSH++S+RSVA+     AS GAD++V LYD+  R +SG L+ H  TI C+
Sbjct: 27  EYKMEKTFATHSHSSSIRSVASNKYYLASGGADDSVYLYDLRHRVESGRLIHHNDTINCI 86

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
            FTPE SHL SCS+DG+IA  R G+WQLEK ++K HKG AVN ++IHP+GK+ALS G D 
Sbjct: 87  AFTPEASHLFSCSNDGTIAAVRCGNWQLEKHWQKPHKGLAVNTLAIHPTGKIALSTGADG 146

Query: 121 TLRTWNLVKGRSAYITNL 138
            LRTWNLVKGR AY  NL
Sbjct: 147 ILRTWNLVKGRQAYAINL 164

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717907|ref|XP_003397415.1| PREDICTED: p21-activated protein kinase-interacting protein 1-like [Bombus terrestris]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/138 (56%), Positives = 102/138 (73%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           +Y + ++F THSH +S+RSVA+   + AS GAD++V LYD+  R + G LM H  T+ C+
Sbjct: 27  EYNMVKSFATHSHVSSIRSVASNKNILASGGADDSVYLYDLHNRVEFGRLMHHNDTVNCI 86

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
            FTP+ SHL SCS DG+IA  R G+WQ EK ++K HKG+AVN ++IHP+GK+ALS G D 
Sbjct: 87  AFTPDASHLFSCSSDGTIAAIRCGNWQTEKHWQKPHKGSAVNTLAIHPTGKIALSTGADG 146

Query: 121 TLRTWNLVKGRSAYITNL 138
            LRTWNLVKGR AY TNL
Sbjct: 147 ILRTWNLVKGRQAYATNL 164

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
UNIPROTKB|F1NWB8	367	PAK1IP1 "p21-activated protein	0.964	0.365	0.547	9.5e-34
UNIPROTKB|Q5ZKU8	369	PAK1IP1 "p21-activated protein	0.964	0.363	0.547	9.5e-34
UNIPROTKB|Q9NWT1	392	PAK1IP1 "p21-activated protein	0.971	0.344	0.543	2e-33
ZFIN|ZDB-GENE-030131-8414	368	pak1ip1 "PAK1 interacting prot	0.971	0.366	0.5	3.2e-33
UNIPROTKB|E2RDQ1	394	PAK1IP1 "Uncharacterized prote	0.971	0.342	0.536	6.7e-33
MGI|MGI:1915333	382	Pak1ip1 "PAK1 interacting prot	0.964	0.350	0.532	8.5e-33
RGD|1565353	382	Pak1ip1 "PAK1 interacting prot	0.956	0.348	0.528	2.9e-32
UNIPROTKB|F1MRA9	392	PAK1IP1 "p21-activated protein	0.913	0.323	0.553	3.7e-32
UNIPROTKB|Q5EA99	392	PAK1IP1 "p21-activated protein	0.913	0.323	0.545	7.7e-32
TAIR|locus:2014988	345	AT1G65030 "AT1G65030" [Arabido	0.964	0.388	0.405	1.5e-19

UNIPROTKB|F1NWB8 PAK1IP1 "p21-activated protein kinase-interacting protein 1-like" [Gallus gallus (taxid:9031)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 75/137 (54%), Positives = 97/137 (70%)

Query:     2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
             +T+T  F  H+HTAS+ +VA  SK   +   DE++ +YDM K+ + GAL+QH GTITCL+
Sbjct:    21 WTVTPDFTHHAHTASLSAVAVNSKYVVTGSRDESIQIYDMRKKVEHGALLQHNGTITCLE 80

Query:    62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
             F    +HL+S ++DG I I+    W+  K  K AHKG  V  +SIHPSGKLALSVG DKT
Sbjct:    81 FYGT-AHLLSGAEDGLICIWNTKRWECLKSIK-AHKGH-VTSLSIHPSGKLALSVGTDKT 137

Query:   122 LRTWNLVKGRSAYITNL 138
             LRTWNLV+GRSA+I NL
Sbjct:   138 LRTWNLVEGRSAFIKNL 154

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|Q5ZKU8 PAK1IP1 "p21-activated protein kinase-interacting protein 1-like" [Gallus gallus (taxid:9031)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 75/137 (54%), Positives = 97/137 (70%)

Query:     2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
             +T+T  F  H+HTAS+ +VA  SK   +   DE++ +YDM K+ + GAL+QH GTITCL+
Sbjct:    23 WTVTPDFTHHAHTASLSAVAVNSKYVVTGSRDESIQIYDMRKKVEHGALLQHNGTITCLE 82

Query:    62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
             F    +HL+S ++DG I I+    W+  K  K AHKG  V  +SIHPSGKLALSVG DKT
Sbjct:    83 FYGT-AHLLSGAEDGLICIWNTKRWECLKSIK-AHKGH-VTSLSIHPSGKLALSVGTDKT 139

Query:   122 LRTWNLVKGRSAYITNL 138
             LRTWNLV+GRSA+I NL
Sbjct:   140 LRTWNLVEGRSAFIKNL 156

GO:0009968 "negative regulation of signal transduction" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q9NWT1 PAK1IP1 "p21-activated protein kinase-interacting protein 1" [Homo sapiens (taxid:9606)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 75/138 (54%), Positives = 95/138 (68%)

Query:     1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
             ++TL   F  H+HTAS+ +VA  S+   +   DET+ +YDM K+ + GAL+ H GTITCL
Sbjct:    29 QWTLVADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIEHGALVHHSGTITCL 88

Query:    61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
             KF     HLIS ++DG I I+    W+  K  K AHKG  V  +SIHPSGKLALSVG DK
Sbjct:    89 KFYGN-RHLISGAEDGLICIWDAKKWECLKSIK-AHKGQ-VTFLSIHPSGKLALSVGTDK 145

Query:   121 TLRTWNLVKGRSAYITNL 138
             TLRTWNLV+GRSA+I N+
Sbjct:   146 TLRTWNLVEGRSAFIKNI 163

GO:0009968 "negative regulation of signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

ZFIN|ZDB-GENE-030131-8414 pak1ip1 "PAK1 interacting protein 1" [Danio rerio (taxid:7955)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 69/138 (50%), Positives = 99/138 (71%)

Query:     1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
             ++T+  TF  H+HTAS+ +V+++++  A+   DET+ LYDM K+ + GAL+ H+GTI+CL
Sbjct:    34 EWTIEPTFTHHAHTASLNAVSSSNQFIATGSKDETIQLYDMCKKTEHGALLHHDGTISCL 93

Query:    61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
             +F    SHL+S   DG I ++    W+  K  + AHKG  V  +S+HPSGKLALSVG DK
Sbjct:    94 EFYGT-SHLLSGGQDGLICVWSTKKWECLKTIR-AHKGQ-VTSLSVHPSGKLALSVGTDK 150

Query:   121 TLRTWNLVKGRSAYITNL 138
             TLRTWNL++GRSA+I N+
Sbjct:   151 TLRTWNLIEGRSAFIKNI 168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0009968 "negative regulation of signal transduction" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E2RDQ1 PAK1IP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 74/138 (53%), Positives = 93/138 (67%)

Query:     1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
             K+T    F  H+HTAS+ +VA  S+   +   DET+ +YDM K+   GAL+ H GTITCL
Sbjct:    31 KWTAVADFTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKIDHGALVHHNGTITCL 90

Query:    61 KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
             KF     HLIS ++DG I ++    W+  K  K AHKG  V  +SIHPSGKLALSVG DK
Sbjct:    91 KFYGN-RHLISGAEDGLICVWDAKKWECLKSIK-AHKGH-VTFLSIHPSGKLALSVGTDK 147

Query:   121 TLRTWNLVKGRSAYITNL 138
             TLRTWNLV+GRSA+I N+
Sbjct:   148 TLRTWNLVEGRSAFIKNI 165

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1915333 Pak1ip1 "PAK1 interacting protein 1" [Mus musculus (taxid:10090)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 73/137 (53%), Positives = 95/137 (69%)

Query:     2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
             +T    F  HSHTAS+  +A+ S+   S   DET+ +YDM ++ + GAL+ H GT+TCLK
Sbjct:    30 WTPVADFTHHSHTASLSVLASNSRYVVSGSKDETIHIYDMKRKVEHGALVHHAGTVTCLK 89

Query:    62 FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
             F     HLIS ++DG I I+ V  W+  K FK AH+G  V  +SIHPSGKLALSVG DKT
Sbjct:    90 FHGN-QHLISGAEDGHICIWDVKRWKCLKTFK-AHRGH-VTFLSIHPSGKLALSVGTDKT 146

Query:   122 LRTWNLVKGRSAYITNL 138
             LRTWNL++GRSA+I N+
Sbjct:   147 LRTWNLIEGRSAFIKNI 163

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0009968 "negative regulation of signal transduction" evidence=IEA

RGD|1565353 Pak1ip1 "PAK1 interacting protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 73/138 (52%), Positives = 96/138 (69%)

Query:     2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
             +T    F  H+HTAS+ +VAA ++   +   DET+ +YDM K+ + GAL+ H GT+TCLK
Sbjct:    30 WTPVADFTHHAHTASLSAVAANNRYVVTGSKDETIHIYDMKKKVEHGALVHHSGTVTCLK 89

Query:    62 FTPEGS-HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
             F   GS HLIS ++DG I ++    W+  K  K AH+G  V  +SIHPSGKLALSVG DK
Sbjct:    90 FY--GSRHLISGAEDGLICVWDAKKWECLKSIK-AHRGH-VTFLSIHPSGKLALSVGTDK 145

Query:   121 TLRTWNLVKGRSAYITNL 138
             TLRTWNLV+GRSA+I N+
Sbjct:   146 TLRTWNLVEGRSAFIKNI 163

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1MRA9 PAK1IP1 "p21-activated protein kinase-interacting protein 1" [Bos taurus (taxid:9913)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 73/132 (55%), Positives = 92/132 (69%)

Query:     8 FVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS 67
             F  H+HTAS+ +VA  S+   +   DET+ +YDM K+   GALM H GTITCLKF   G+
Sbjct:    36 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALMHHNGTITCLKF--HGN 93

Query:    68 -HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
              HLIS ++DG I ++    W+  K  + AHKG  V  +SIHPSGKLALSVG DKTLRTWN
Sbjct:    94 RHLISGAEDGLICVWDARRWECLKSIR-AHKGH-VTFLSIHPSGKLALSVGTDKTLRTWN 151

Query:   127 LVKGRSAYITNL 138
             LV+GRSA+I N+
Sbjct:   152 LVEGRSAFIKNI 163

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q5EA99 PAK1IP1 "p21-activated protein kinase-interacting protein 1" [Bos taurus (taxid:9913)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 72/132 (54%), Positives = 92/132 (69%)

Query:     8 FVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS 67
             F  H+HTAS+ +VA  S+   +   DET+ +YDM K+   GALM H GTITCLKF   G+
Sbjct:    36 FTHHAHTASLSAVAVNSRFVVTGSKDETIHIYDMKKKVDHGALMHHNGTITCLKF--HGN 93

Query:    68 -HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
              HLIS ++DG I ++    W+  K  + AHKG  V  +SIHPSG+LALSVG DKTLRTWN
Sbjct:    94 RHLISGAEDGLICVWDARRWECLKSIR-AHKGH-VTFLSIHPSGRLALSVGTDKTLRTWN 151

Query:   127 LVKGRSAYITNL 138
             LV+GRSA+I N+
Sbjct:   152 LVEGRSAFIKNI 163

GO:0005730 "nucleolus" evidence=IEA

GO:0009968 "negative regulation of signal transduction" evidence=IEA

TAIR|locus:2014988 AT1G65030 "AT1G65030" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 58/143 (40%), Positives = 84/143 (58%)

Query:     3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHE--GTITCL 60
             TL+  F   SH + + +VA +   AAS G+D+T+ LYD+      G+L+ H    +IT L
Sbjct:    30 TLSPLFSYPSHISPITTVACSGPAAASGGSDDTIHLYDLPSASSLGSLLDHNHAASITAL 89

Query:    61 KF-TPEG----SHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALS 115
              F TP       +LIS + DGS+AIF    + L K F+  HK  AVN ++IHPSGKLAL+
Sbjct:    90 SFYTPSSLSFPRNLISAAADGSVAIFDTDPFVLLKSFRP-HK-KAVNDLAIHPSGKLALA 147

Query:   116 VGKDKTLRTWNLVKGRSAYITNL 138
             V +D+     NLV+G+ ++   L
Sbjct:   148 VYRDEFFAMLNLVRGKRSFCCRL 170

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DCE5	PK1IP_MOUSE	No assigned EC number	0.5328	0.9640	0.3507	yes	N/A
Q5ZKU8	PK1IP_CHICK	No assigned EC number	0.5474	0.9640	0.3631	yes	N/A
Q9NWT1	PK1IP_HUMAN	No assigned EC number	0.5434	0.9712	0.3443	yes	N/A
Q5EA99	PK1IP_BOVIN	No assigned EC number	0.5144	0.9712	0.3443	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-20
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-07
smart00320	40	smart00320, WD40, WD40 repeats	7e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.003
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 82.8 bits (205), Expect = 4e-20
 Identities = 40/131 (30%), Positives = 61/131 (46%), Gaps = 4/131 (3%)

Query: 3   TLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           T         HT  V SVA        ASS  D T+ L+D+   K    L  H G +  +
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV 183

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK 120
            F+P+G  L+S S DG+I ++ + + +      + H+   VN ++  P G L  S  +D 
Sbjct: 184 AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL-RGHEN-GVNSVAFSPDGYLLASGSEDG 241

Query: 121 TLRTWNLVKGR 131
           T+R W+L  G 
Sbjct: 242 TIRVWDLRTGE 252

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 78.1 bits (193), Expect = 2e-18
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 13  HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
           HT  VR VA  A     AS  +D+T+ L+D+   +    L  H   ++ + F+P+G  L 
Sbjct: 50  HTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILS 109

Query: 71  SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
           S S D +I ++ V + +      + H    VN ++  P G    S  +D T++ W+L  G
Sbjct: 110 SSSRDKTIKVWDVETGKCLTTL-RGHTDW-VNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167

Query: 131 R 131
           +
Sbjct: 168 K 168

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 77.8 bits (192), Expect = 4e-18
 Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 4/123 (3%)

Query: 11  HSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
             HT+ V SVA     ++ +SS  D+T+ ++D+   K    L  H   +  + F+P+G+ 
Sbjct: 90  TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149

Query: 69  LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV 128
           + S S DG+I ++ + + +        H G  VN ++  P G+  LS   D T++ W+L 
Sbjct: 150 VASSSQDGTIKLWDLRTGKCVATL-TGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLS 207

Query: 129 KGR 131
            G+
Sbjct: 208 TGK 210

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 4   LTQTFVTHSHTASVRSVAATSKLA--ASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
              T     HT  V SVA +       SS +D T+ L+D+   K  G L  HE  +  + 
Sbjct: 169 CVATL--TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVA 226

Query: 62  FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT 121
           F+P+G  L S S+DG+I ++ + + +  +     H   +V  ++  P GK   S   D T
Sbjct: 227 FSPDGYLLASGSEDGTIRVWDLRTGECVQTL-SGHTN-SVTSLAWSPDGKRLASGSADGT 284

Query: 122 LRTWN 126
           +R W+
Sbjct: 285 IRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.8 bits (161), Expect = 9e-14
 Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 4/122 (3%)

Query: 12  SHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL 69
            HT  V  VA     KL A+   D T+ ++D+   +    L  H G +  +  + +G++L
Sbjct: 7   GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYL 66

Query: 70  ISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK 129
            S S D +I ++ + + +  +     H    V+ ++  P G++  S  +DKT++ W++  
Sbjct: 67  ASGSSDKTIRLWDLETGECVRTL-TGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVET 124

Query: 130 GR 131
           G+
Sbjct: 125 GK 126

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.3 bits (147), Expect = 7e-12
 Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 6/128 (4%)

Query: 13  HTASVRSVAATSK---LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL 69
           H+ SV S+A +     LA+ S  D T+ L+D+   K    L  H   ++ L F+P+G  L
Sbjct: 154 HSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLL 213

Query: 70  I-SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV 128
           I S S DG+I ++ + + +L +     H  + V+  S  P G L  S   D T+R W+L 
Sbjct: 214 IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS--SFSPDGSLLASGSSDGTIRLWDLR 271

Query: 129 KGRSAYIT 136
              S   T
Sbjct: 272 SSSSLLRT 279

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 53  HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
           H G +TC+ F+P+G  L + S DG+I ++ + + +L +  K  H G  V  ++    G  
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK-GHTG-PVRDVAASADGTY 65

Query: 113 ALSVGKDKTLRTWNLVKGRSAYI 135
             S   DKT+R W+L  G     
Sbjct: 66  LASGSSDKTIRLWDLETGECVRT 88

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.3 bits (134), Expect = 3e-10
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 3/139 (2%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDM-VKRKQSGALMQHEGTITC 59
              L  T   HS  + V S +    L AS  +D T+ L+D+         L  H  ++  
Sbjct: 231 GKLLRSTLSGHS-DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLS 289

Query: 60  LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG-KLALSVGK 118
           + F+P+G  L S S DG++ ++ + + +L            V+ +S  P G  L      
Sbjct: 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 119 DKTLRTWNLVKGRSAYITN 137
           D T+R W+L  G+      
Sbjct: 350 DGTIRLWDLRTGKPLKTLE 368

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.3 bits (129), Expect = 2e-09
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 4/139 (2%)

Query: 3   TLTQTFVTHSHTASVRSVAATSK---LAASSGADETVVLYDMVKRKQSGALMQHEGTITC 59
           T         HT  V S+A +     L AS  +D T+ L+D+   K   + +        
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 60  LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
             F+P+GS L S S DG+I ++ + S          H   +V  ++  P GKL  S   D
Sbjct: 247 SSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS-SVLSVAFSPDGKLLASGSSD 305

Query: 120 KTLRTWNLVKGRSAYITNL 138
            T+R W+L  G+      L
Sbjct: 306 GTVRLWDLETGKLLSSLTL 324

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 53.9 bits (128), Expect = 2e-09
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 10/136 (7%)

Query: 9   VTHSHTASVRSVAATSK-----LAASSGADETVVLYDMVK-RKQSGALMQHEGTITCLKF 62
           +   H +SV  +A +S      L ASS  D TV L+D+    K    L  H  ++T L F
Sbjct: 104 LEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF 163

Query: 63  TPEGSHLISCSD-DGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDK 120
           +P+G  L S S  DG+I ++ + + +             V+ ++  P G  L  S   D 
Sbjct: 164 SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP--VSSLAFSPDGGLLIASGSSDG 221

Query: 121 TLRTWNLVKGRSAYIT 136
           T+R W+L  G+    T
Sbjct: 222 TIRLWDLSTGKLLRST 237

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 46.6 bits (109), Expect = 8e-07
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 12  SHTASVRSVAAT---SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
            H   V S++ +   S L +    D T+ L+D+   K    L  H   +  + F+P+G  
Sbjct: 326 GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSPDGRV 384

Query: 69  LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
           + S S DG++ ++ + +     L       + V  +   P GK   S   D T+R W+L
Sbjct: 385 VSSGSTDGTVRLWDLST--GSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.4 bits (95), Expect = 7e-06
 Identities = 14/32 (43%), Positives = 22/32 (68%)

Query: 50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAIF 81
          L  H G +T + F+P+G +L S SDDG+I ++
Sbjct: 8  LKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 44 RKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIF 81
           K    L  H G +T + F+P+G+ L S SDDG++ ++
Sbjct: 1  GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 37.8 bits (86), Expect = 9e-04
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 42  VKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV-GSWQLEKLFKKAHKGTA 100
           +    S  L  HE +IT + F+P+G  L+S S DG+I ++ +    +L K  +  H  + 
Sbjct: 53  LPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSV 112

Query: 101 VNHISIHPSGK--LALSVGKDKTLRTWNL 127
                  P G   L  S   D T++ W+L
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDL 141

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 20/82 (24%), Positives = 34/82 (41%)

Query: 11  HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
                   S +   ++ +S   D TV L+D+        L  H   +T L F+P+G  L 
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428

Query: 71  SCSDDGSIAIFRVGSWQLEKLF 92
           S S D +I ++ + +      F
Sbjct: 429 SGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 32.7 bits (75), Expect = 0.004
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 94  KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
           K H G  V  ++  P G L  S   D T+R W+
Sbjct: 8   KGHTG-PVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG0271|consensus	480		99.95
KOG0286|consensus	343		99.95
KOG0272|consensus	459		99.95
KOG0279|consensus	315		99.94
KOG0263|consensus	707		99.94
KOG0263|consensus	707		99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0272|consensus	459		99.93
KOG0266|consensus	456		99.93
KOG0266|consensus	456		99.93
KOG0294|consensus	362		99.92
KOG0279|consensus	315		99.92
KOG0286|consensus	343		99.92
PTZ00420	568	coronin; Provisional	99.92
KOG0271|consensus	480		99.92
KOG0285|consensus	460		99.92
KOG0273|consensus	524		99.91
KOG0315|consensus	311		99.9
KOG0291|consensus	893		99.9
KOG0276|consensus	794		99.9
KOG0316|consensus	307		99.9
KOG0295|consensus	406		99.89
KOG0283|consensus	712		99.89
KOG0282|consensus	503		99.89
PTZ00421	493	coronin; Provisional	99.88
KOG0319|consensus	775		99.88
KOG0284|consensus	464		99.88
KOG0285|consensus	460		99.88
KOG0296|consensus	399		99.87
KOG0318|consensus	603		99.87
KOG0315|consensus	311		99.87
KOG0283|consensus	712		99.87
KOG0275|consensus	508		99.87
KOG0318|consensus	603		99.87
KOG0291|consensus	893		99.87
KOG0302|consensus	440		99.86
KOG0281|consensus	499		99.86
KOG0264|consensus	422		99.86
KOG0316|consensus	307		99.86
KOG0281|consensus	499		99.86
KOG0269|consensus	839		99.86
KOG0289|consensus	506		99.86
KOG0643|consensus	327		99.85
KOG0303|consensus	472		99.85
KOG0645|consensus	312		99.85
KOG0284|consensus	464		99.85
KOG0277|consensus	311		99.85
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.85
KOG0319|consensus	775		99.84
KOG0265|consensus	338		99.84
KOG0295|consensus	406		99.84
KOG0647|consensus	347		99.84
PTZ00420	568	coronin; Provisional	99.84
KOG0296|consensus	399		99.84
KOG0265|consensus	338		99.84
KOG0292|consensus	1202		99.84
KOG0772|consensus	641		99.84
KOG0645|consensus	312		99.84
KOG0275|consensus	508		99.83
KOG0313|consensus	423		99.83
KOG0310|consensus	487		99.83
KOG0293|consensus	519		99.83
KOG0640|consensus	430		99.83
KOG0276|consensus	794		99.83
KOG0310|consensus	487		99.83
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.83
PLN00181	793	protein SPA1-RELATED; Provisional	99.82
KOG0273|consensus	524		99.82
KOG0267|consensus	825		99.82
KOG0282|consensus	503		99.82
KOG0308|consensus	735		99.82
KOG0277|consensus	311		99.82
KOG0973|consensus	942		99.82
PLN00181	793	protein SPA1-RELATED; Provisional	99.81
KOG0292|consensus	1202		99.81
KOG0302|consensus	440		99.81
KOG1407|consensus	313		99.81
KOG0264|consensus	422		99.8
KOG2110|consensus	391		99.8
KOG0640|consensus	430		99.8
KOG0643|consensus	327		99.8
KOG1446|consensus	311		99.8
KOG0274|consensus	537		99.8
KOG0289|consensus	506		99.8
KOG1034|consensus	385		99.79
KOG1273|consensus	405		99.79
KOG0305|consensus	484		99.79
KOG0306|consensus	888		99.78
KOG0274|consensus	537		99.78
KOG1274|consensus	933		99.78
KOG0306|consensus	888		99.78
KOG1445|consensus	1012		99.78
KOG0646|consensus	476		99.78
KOG0278|consensus	334		99.78
KOG0639|consensus	705		99.77
KOG0772|consensus	641		99.77
KOG1446|consensus	311		99.76
KOG0300|consensus	481		99.76
KOG2111|consensus	346		99.76
KOG1407|consensus	313		99.76
KOG0270|consensus	463		99.75
KOG0313|consensus	423		99.75
KOG4283|consensus	397		99.75
KOG0305|consensus	484		99.74
KOG1332|consensus	299		99.74
KOG0647|consensus	347		99.74
KOG1539|consensus	910		99.73
KOG2048|consensus	691		99.73
KOG0646|consensus	476		99.73
KOG0641|consensus	350		99.73
KOG0269|consensus	839		99.73
KOG2394|consensus	636		99.73
KOG0308|consensus	735		99.72
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.72
KOG0293|consensus	519		99.72
KOG0288|consensus	459		99.72
KOG0278|consensus	334		99.72
KOG1332|consensus	299		99.71
KOG1539|consensus	910		99.71
KOG1009|consensus	434		99.71
KOG4283|consensus	397		99.71
KOG0267|consensus	825		99.71
KOG0300|consensus	481		99.7
KOG1063|consensus	764		99.7
KOG0299|consensus	479		99.7
KOG0303|consensus	472		99.7
KOG0973|consensus	942		99.69
KOG0288|consensus	459		99.69
KOG1036|consensus	323		99.69
KOG2445|consensus	361		99.68
KOG0649|consensus	325		99.68
KOG2096|consensus	420		99.68
KOG0301|consensus	745		99.68
KOG0299|consensus	479		99.68
KOG0294|consensus	362		99.66
KOG2394|consensus	636		99.66
KOG0301|consensus	745		99.66
KOG0268|consensus	433		99.66
KOG2110|consensus	391		99.65
KOG1274|consensus	933		99.65
KOG1036|consensus	323		99.65
KOG0268|consensus	433		99.64
KOG0322|consensus	323		99.64
KOG0649|consensus	325		99.64
KOG0771|consensus	398		99.63
KOG1273|consensus	405		99.63
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.63
KOG3881|consensus	412		99.63
KOG1310|consensus	758		99.62
KOG2096|consensus	420		99.62
KOG0290|consensus	364		99.62
KOG0639|consensus	705		99.62
KOG0642|consensus	577		99.61
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.61
KOG1009|consensus	434		99.61
KOG0321|consensus	720		99.61
KOG1408|consensus	1080		99.61
KOG1445|consensus	1012		99.6
KOG0270|consensus	463		99.59
KOG0641|consensus	350		99.59
KOG1007|consensus	370		99.59
KOG0644|consensus	1113		99.58
KOG1188|consensus	376		99.58
KOG2919|consensus	406		99.57
KOG4227|consensus	609		99.56
KOG1408|consensus	1080		99.55
KOG0642|consensus	577		99.54
KOG4328|consensus	498		99.54
KOG1523|consensus	361		99.54
KOG2048|consensus	691		99.53
KOG2106|consensus	626		99.53
KOG2055|consensus	514		99.53
KOG0307|consensus	1049		99.52
KOG4378|consensus	673		99.52
KOG4378|consensus	673		99.52
KOG2106|consensus	626		99.51
KOG1007|consensus	370		99.5
KOG1523|consensus	361		99.49
KOG1034|consensus	385		99.49
KOG1188|consensus	376		99.48
KOG1063|consensus	764		99.47
KOG0974|consensus	967		99.46
KOG1272|consensus	545		99.46
KOG2445|consensus	361		99.46
KOG0321|consensus	720		99.45
KOG3914|consensus	390		99.45
KOG1272|consensus	545		99.44
KOG1963|consensus	792		99.44
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.44
KOG0307|consensus	1049		99.44
COG2319	466	FOG: WD40 repeat [General function prediction only	99.43
KOG0322|consensus	323		99.43
KOG2055|consensus	514		99.43
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.42
KOG1240|consensus	1431		99.42
KOG1538|consensus	1081		99.41
KOG4328|consensus	498		99.4
KOG1587|consensus	555		99.4
KOG0650|consensus	733		99.39
KOG2111|consensus	346		99.37
KOG2139|consensus	445		99.36
KOG2321|consensus	703		99.34
KOG1524|consensus	737		99.33
COG2319	466	FOG: WD40 repeat [General function prediction only	99.31
KOG2919|consensus	406		99.31
KOG2695|consensus	425		99.31
KOG0650|consensus	733		99.31
KOG2139|consensus	445		99.29
KOG1310|consensus	758		99.29
KOG0974|consensus	967		99.27
KOG0771|consensus	398		99.27
KOG1524|consensus	737		99.26
KOG0280|consensus	339		99.25
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.25
KOG2321|consensus	703		99.24
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.24
KOG4227|consensus	609		99.23
PRK11028	330	6-phosphogluconolactonase; Provisional	99.2
KOG1517|consensus	1387		99.2
KOG4547|consensus	541		99.2
PRK11028	330	6-phosphogluconolactonase; Provisional	99.18
KOG0280|consensus	339		99.17
KOG4547|consensus	541		99.15
KOG0290|consensus	364		99.15
KOG1538|consensus	1081		99.14
PRK05137	435	tolB translocation protein TolB; Provisional	99.13
KOG3881|consensus	412		99.11
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	99.09
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.08
PRK01742	429	tolB translocation protein TolB; Provisional	99.07
PRK03629	429	tolB translocation protein TolB; Provisional	99.07
COG4946	668	Uncharacterized protein related to the periplasmic	99.06
KOG1587|consensus	555		99.06
KOG2041|consensus	1189		99.05
KOG1409|consensus	404		99.04
KOG1517|consensus	1387		99.03
KOG1963|consensus	792		99.02
PRK01742	429	tolB translocation protein TolB; Provisional	99.01
KOG4190|consensus	1034		98.99
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.98
PRK04922	433	tolB translocation protein TolB; Provisional	98.98
KOG2315|consensus	566		98.97
PRK04922	433	tolB translocation protein TolB; Provisional	98.93
PRK02889	427	tolB translocation protein TolB; Provisional	98.93
PRK05137	435	tolB translocation protein TolB; Provisional	98.93
PRK03629	429	tolB translocation protein TolB; Provisional	98.93
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.92
KOG1064|consensus	2439		98.91
KOG1064|consensus	2439		98.9
PRK02889	427	tolB translocation protein TolB; Provisional	98.9
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.9
KOG4497|consensus	447		98.9
KOG1240|consensus	1431		98.89
KOG1409|consensus	404		98.89
PRK00178	430	tolB translocation protein TolB; Provisional	98.89
KOG1334|consensus	559		98.87
KOG2066|consensus	846		98.85
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.83
PRK01029	428	tolB translocation protein TolB; Provisional	98.81
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.8
KOG4714|consensus	319		98.8
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.79
KOG4532|consensus	344		98.78
PRK04792	448	tolB translocation protein TolB; Provisional	98.77
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.76
KOG4714|consensus	319		98.75
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.75
PRK01029	428	tolB translocation protein TolB; Provisional	98.71
KOG4497|consensus	447		98.7
KOG0309|consensus	1081		98.69
KOG3914|consensus	390		98.67
KOG4532|consensus	344		98.67
KOG0644|consensus	1113		98.66
KOG4640|consensus	665		98.66
PRK00178	430	tolB translocation protein TolB; Provisional	98.65
KOG1354|consensus	433		98.64
KOG1275|consensus	1118		98.63
KOG4190|consensus	1034		98.61
KOG1912|consensus	1062		98.6
COG4946	668	Uncharacterized protein related to the periplasmic	98.59
KOG3621|consensus	726		98.58
PRK04792	448	tolB translocation protein TolB; Provisional	98.57
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.55
KOG4640|consensus	665		98.55
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.53
KOG1832|consensus	1516		98.53
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.5
KOG1354|consensus	433		98.49
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.48
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	98.47
KOG1645|consensus	463		98.45
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.44
PRK04043	419	tolB translocation protein TolB; Provisional	98.4
KOG3617|consensus	1416		98.38
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.38
KOG2315|consensus	566		98.36
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.32
KOG2695|consensus	425		98.28
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.27
PRK04043	419	tolB translocation protein TolB; Provisional	98.26
KOG2314|consensus	698		98.26
KOG1334|consensus	559		98.21
KOG1275|consensus	1118		98.17
KOG2066|consensus	846		98.17
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.17
PRK02888	635	nitrous-oxide reductase; Validated	98.17
KOG2314|consensus	698		98.16
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.16
KOG4649|consensus	354		98.14
KOG2079|consensus	1206		98.1
KOG1912|consensus	1062		98.08
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	98.07
KOG0882|consensus	558		98.05
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.05
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.03
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.01
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.01
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.01
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.99
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.99
KOG2114|consensus	933		97.98
KOG2041|consensus	1189		97.97
KOG0309|consensus	1081		97.94
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.93
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	97.88
KOG1645|consensus	463		97.86
KOG2444|consensus	238		97.86
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.86
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.84
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.84
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.82
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	97.81
KOG1920|consensus	1265		97.8
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.78
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.76
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.7
PRK02888	635	nitrous-oxide reductase; Validated	97.69
KOG0882|consensus	558		97.66
KOG1008|consensus	783		97.58
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.55
KOG4649|consensus	354		97.51
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.46
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	97.42
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.41
KOG2079|consensus	1206		97.39
KOG2114|consensus	933		97.39
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.37
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	97.35
KOG1832|consensus	1516		97.34
KOG3621|consensus	726		97.32
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.3
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.29
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.28
KOG1008|consensus	783		97.24
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	97.21
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.18
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.15
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.1
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.08
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.08
PRK13616	591	lipoprotein LpqB; Provisional	96.93
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.91
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	96.88
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.87
COG3391	381	Uncharacterized conserved protein [Function unknow	96.84
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.82
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.81
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.78
KOG2395|consensus	644		96.76
KOG3617|consensus	1416		96.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.68
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	96.62
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.62
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.61
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	96.56
KOG1920|consensus	1265		96.54
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.54
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.42
PRK13616	591	lipoprotein LpqB; Provisional	96.4
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.38
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.32
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.23
COG3391	381	Uncharacterized conserved protein [Function unknow	96.21
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.18
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.96
KOG2444|consensus	238		95.96
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.83
COG1520	370	FOG: WD40-like repeat [Function unknown]	95.8
PHA02713	557	hypothetical protein; Provisional	95.77
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.72
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	95.4
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.35
KOG2395|consensus	644		95.31
KOG4441|consensus	571		95.24
KOG3630|consensus	1405		95.22
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	95.19
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.18
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.13
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.01
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	95.01
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.01
PHA02713	557	hypothetical protein; Provisional	94.89
KOG4460|consensus	741		94.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	94.86
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.8
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.78
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.77
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	94.75
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.7
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.69
KOG4441|consensus	571		94.68
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	94.66
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.56
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.26
PHA03098	534	kelch-like protein; Provisional	94.22
KOG3630|consensus	1405		94.13
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.09
KOG1916|consensus	1283		94.0
PHA02790	480	Kelch-like protein; Provisional	93.11
KOG4499|consensus	310		93.06
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	92.82
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	92.79
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	92.32
PHA03098	534	kelch-like protein; Provisional	92.2
COG5167	776	VID27 Protein involved in vacuole import and degra	92.14
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	92.0
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	91.91
KOG4499|consensus	310		91.75
KOG2377|consensus	657		91.74
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	91.71
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.29
KOG1898|consensus	1205		91.23
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	90.97
TIGR02171	912	Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou	90.9
KOG1896|consensus	1366		90.85
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	90.8
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.79
PRK10115	686	protease 2; Provisional	90.62
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	90.62
COG5167	776	VID27 Protein involved in vacuole import and degra	90.51
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.49
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	90.37
PHA02790	480	Kelch-like protein; Provisional	90.28
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.05
PRK10115	686	protease 2; Provisional	90.01
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	89.71
KOG1897|consensus	1096		89.43
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.41
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.39
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	89.22
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.04
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	88.87
KOG2280|consensus	829		88.46
KOG2109|consensus	788		88.36
PF14727	418	PHTB1_N: PTHB1 N-terminus	87.96
PF12341	27	DUF3639: Protein of unknown function (DUF3639) ; I	87.95
KOG1897|consensus	1096		87.17
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	86.72
PF12768	281	Rax2: Cortical protein marker for cell polarity	86.07
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	85.83
COG4590	733	ABC-type uncharacterized transport system, permeas	85.76
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	85.6
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.54
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	85.5
PF12768	281	Rax2: Cortical protein marker for cell polarity	84.87
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	84.67
KOG3616|consensus	1636		84.66
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	84.12
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	83.63
KOG2103|consensus	910		83.46
KOG2247|consensus	615		83.44
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	83.34
COG5276	370	Uncharacterized conserved protein [Function unknow	82.78
KOG2377|consensus	657		82.25
KOG2727|consensus	1244		81.88
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	81.75
TIGR03054	135	photo_alph_chp1 putative photosynthetic complex as	80.27

>KOG0271|consensus

Probab=99.95  E-value=1.1e-27  Score=153.39  Aligned_cols=126  Identities=24%  Similarity=0.331  Sum_probs=114.4

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ..||..+|.|+.|  ++..|++|+.|.++++||+.+..+..+.++|...|.|++|+|||+.+|+|+.||.|++||..+++
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~  190 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ  190 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC
Confidence            4578899999887  89999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEEEeCCCCcceeEEEEcc-----CCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHP-----SGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .+..--..|... |++++|.|     ..+++++++.||.++|||+..++.+..+
T Consensus       191 ~~g~~l~gH~K~-It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l  243 (480)
T KOG0271|consen  191 QIGRALRGHKKW-ITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL  243 (480)
T ss_pred             cccccccCcccc-eeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe
Confidence            776554667766 99999997     6679999999999999999988877654

>KOG0286|consensus

Probab=99.95  E-value=3.7e-26  Score=141.88  Aligned_cols=127  Identities=22%  Similarity=0.352  Sum_probs=119.2

Q ss_pred             EeecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCc
Q psy11518          9 VTHSHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus         9 ~~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ...+|.+++.|+.| +...|++++.|.+..+||+++++.+..|.+|.+.|.+++++| +++.+++|+.|+..++||++.+
T Consensus       140 ~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~  219 (343)
T KOG0286|consen  140 ELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG  219 (343)
T ss_pred             eecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence            35589999999999 889999999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ...+.+ ..|... |.+++|.|+|.-+++|++|+..++||+|..+.+..++
T Consensus       220 ~c~qtF-~ghesD-INsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys  268 (343)
T KOG0286|consen  220 QCVQTF-EGHESD-INSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS  268 (343)
T ss_pred             ceeEee-cccccc-cceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec
Confidence            999998 666666 9999999999999999999999999999998887764

>KOG0272|consensus

Probab=99.95  E-value=1.9e-27  Score=153.32  Aligned_cols=123  Identities=20%  Similarity=0.282  Sum_probs=112.5

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      +|...|..+.|  +|++|++++.|.+.++||+.++..+....+|...|.+++|.|+|..+++|+.|..-++||++++..+
T Consensus       259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~i  338 (459)
T KOG0272|consen  259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCI  338 (459)
T ss_pred             cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEE
Confidence            56666776666  9999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      -.+ ..|... |.+++|+|+|..+++|+.|++++|||++..+.++.+
T Consensus       339 m~L-~gH~k~-I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~i  383 (459)
T KOG0272|consen  339 MFL-AGHIKE-ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTI  383 (459)
T ss_pred             EEe-cccccc-eeeEeECCCceEEeecCCCCcEEEeeecccccceec
Confidence            887 455555 999999999999999999999999999998887665

>KOG0279|consensus

Probab=99.94  E-value=2e-25  Score=137.74  Aligned_cols=131  Identities=20%  Similarity=0.333  Sum_probs=111.5

Q ss_pred             eEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518          4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      .++.+..+.|...=..+++++++.++++.|+.+++||+.+++....|.+|...|.+++|+++.+.+++|+.|.+|++|+.
T Consensus        55 ~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt  134 (315)
T KOG0279|consen   55 PVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNT  134 (315)
T ss_pred             eeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeee
Confidence            45667766666555566679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEEEeCCCCcceeEEEEccC--CcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         84 GSWQLEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ............++.. |.+++|+|+  ..+|++++.|+.+++||+++.+....
T Consensus       135 ~g~ck~t~~~~~~~~W-VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~  187 (315)
T KOG0279|consen  135 LGVCKYTIHEDSHREW-VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTT  187 (315)
T ss_pred             cccEEEEEecCCCcCc-EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhc
Confidence            8655555443333555 999999998  67999999999999999998776543

>KOG0263|consensus

Probab=99.94  E-value=3.3e-26  Score=156.43  Aligned_cols=117  Identities=32%  Similarity=0.526  Sum_probs=107.4

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      +|...+.|+.|  +..++++|+.|.+|++||+.+|..+..|.+|.++|++++|+|+|++|++|+.|+.|++||+.++...
T Consensus       533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v  612 (707)
T KOG0263|consen  533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV  612 (707)
T ss_pred             ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence            56666666665  9999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ..+ ..|.+. |.++.|+.+|..|++|+.|..|++||+..-
T Consensus       613 ~~l-~~Ht~t-i~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  613 KQL-KGHTGT-IYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             hhh-hcccCc-eeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            888 666555 999999999999999999999999998754

>KOG0263|consensus

Probab=99.94  E-value=7.4e-26  Score=154.75  Aligned_cols=126  Identities=22%  Similarity=0.413  Sum_probs=115.6

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ....||..+|.++.|  .|-++|+|+.|++-++|......++..+.+|-+.|.|++|+|+..|+++|+.|.++++||+.+
T Consensus       487 V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~  566 (707)
T KOG0263|consen  487 VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST  566 (707)
T ss_pred             EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC
Confidence            344578888877776  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      +...+.+ .+|++. |.+++|+|+|++|++|++|+.|.+||+.+++++..
T Consensus       567 G~~VRiF-~GH~~~-V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~  614 (707)
T KOG0263|consen  567 GNSVRIF-TGHKGP-VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQ  614 (707)
T ss_pred             CcEEEEe-cCCCCc-eEEEEEcCCCceEeecccCCcEEEEEcCCCcchhh
Confidence            9999998 677766 99999999999999999999999999999877643

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=2.3e-24  Score=147.07  Aligned_cols=125  Identities=17%  Similarity=0.234  Sum_probs=108.4

Q ss_pred             eecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-------ceeeEEEecCCCeEEEEECCCC-CEEEEecCCCcE
Q psy11518         10 THSHTASVRSVAA---TSKLAASSGADETVVLYDMVKR-------KQSGALMQHEGTITCLKFTPEG-SHLISCSDDGSI   78 (139)
Q Consensus        10 ~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i   78 (139)
                      ..+|...|.++.|   ++++|++|+.|+.|++||+.++       .++..+.+|...|.+++|+|++ ++|++++.|+.|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            4578888988887   5789999999999999998764       3567788999999999999975 689999999999


Q ss_pred             EEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ++||+.+++....+ ..|... |.+++|+|++.++++++.|+.|++||+++++.+..+
T Consensus       151 rIWDl~tg~~~~~l-~~h~~~-V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl  206 (493)
T PTZ00421        151 NVWDVERGKAVEVI-KCHSDQ-ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSV  206 (493)
T ss_pred             EEEECCCCeEEEEE-cCCCCc-eEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEE
Confidence            99999998877776 445554 999999999999999999999999999998876554

>KOG0272|consensus

Probab=99.93  E-value=1.1e-25  Score=145.32  Aligned_cols=124  Identities=23%  Similarity=0.320  Sum_probs=114.0

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      .||...|.+++|  ||.++++|+.|..-+|||+.+++++..+.+|..+|..++|+|+|..+|||+.|+++++||++....
T Consensus       300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             cccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc
Confidence            478888999988  999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             EEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ...+ ..|..- |+.++|+| .|.+|++++.|++++||..++.+++.++
T Consensus       380 ly~i-pAH~nl-VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL  426 (459)
T KOG0272|consen  380 LYTI-PAHSNL-VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL  426 (459)
T ss_pred             ceec-ccccch-hhheEecccCCeEEEEcccCcceeeecCCCcccchhh
Confidence            7777 566655 99999998 8889999999999999999998876543

>KOG0266|consensus

Probab=99.93  E-value=4.8e-24  Score=145.16  Aligned_cols=120  Identities=29%  Similarity=0.517  Sum_probs=110.5

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEc-cCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDM-VKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      .+|...|.++.|  +++++++++.|.++++||+ ..+..+.++.+|...|++++|+|+++.+++|+.|+.|++||+++++
T Consensus       200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~  279 (456)
T KOG0266|consen  200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE  279 (456)
T ss_pred             cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe
Confidence            467788888887  9999999999999999999 5558899999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +...+ ..|... |++++|++++.++++++.|+.|++||+.++..
T Consensus       280 ~~~~l-~~hs~~-is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~  322 (456)
T KOG0266|consen  280 CVRKL-KGHSDG-ISGLAFSPDGNLLVSASYDGTIRVWDLETGSK  322 (456)
T ss_pred             EEEee-eccCCc-eEEEEECCCCCEEEEcCCCccEEEEECCCCce
Confidence            99998 566665 99999999999999999999999999999983

>KOG0266|consensus

Probab=99.93  E-value=1.6e-23  Score=142.62  Aligned_cols=129  Identities=31%  Similarity=0.478  Sum_probs=112.6

Q ss_pred             EEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518          5 TQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus         5 ~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      .++++  +|...++++.|  +++++++|+.|++|++||++++++...+.+|...|++++|+++++++++++.|+.|++||
T Consensus       239 ~~~l~--gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd  316 (456)
T KOG0266|consen  239 LKTLK--GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWD  316 (456)
T ss_pred             EEEec--CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEE
Confidence            34444  78888888887  789999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCceE--EEEEEeCCCCc-ceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         83 VGSWQL--EKLFKKAHKGT-AVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        83 ~~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +.++..  ...+. .+... +++.++|+|++.++++++.|+.+++||++.++.+..+
T Consensus       317 ~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~  372 (456)
T KOG0266|consen  317 LETGSKLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTY  372 (456)
T ss_pred             CCCCceeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeee
Confidence            999983  44542 22222 5899999999999999999999999999988766554

>KOG0294|consensus

Probab=99.92  E-value=6.4e-24  Score=133.11  Aligned_cols=136  Identities=57%  Similarity=0.888  Sum_probs=124.7

Q ss_pred             CeeeEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCC--EEEEecCCCcE
Q psy11518          1 KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS--HLISCSDDGSI   78 (139)
Q Consensus         1 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i   78 (139)
                      ++++...|.++.|.+++++++.++.++++|+.|.+|+|||+.....+..+-.|.+.|+++.|.+...  .|++|+.||.|
T Consensus        30 ~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   30 KPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             ceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            3567778888999999999999999999999999999999999999999999999999999998655  89999999999


Q ss_pred             EEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .+|+...+.....+ .+|.+. |+.++.+|.+++-++.+.|+.++.||+-+|+.-+..++
T Consensus       110 ~iw~~~~W~~~~sl-K~H~~~-Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L  167 (362)
T KOG0294|consen  110 IIWRVGSWELLKSL-KAHKGQ-VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL  167 (362)
T ss_pred             EEEEcCCeEEeeee-cccccc-cceeEecCCCceEEEEcCCceeeeehhhcCccceeecc
Confidence            99999999888888 777777 99999999999999999999999999999988776654

>KOG0279|consensus

Probab=99.92  E-value=1.2e-23  Score=129.92  Aligned_cols=128  Identities=27%  Similarity=0.467  Sum_probs=108.8

Q ss_pred             EEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEec--CCCeEEEEECCC--CCEEEEecCCCcEEE
Q psy11518          7 TFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQH--EGTITCLKFTPE--GSHLISCSDDGSIAI   80 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~--~~~l~~~~~d~~i~~   80 (139)
                      +.++.+|...|+++++  |...+++|+.|.++++|+.... +..+...+  .+-|+|+.|+|+  ..++++++.|+++++
T Consensus        98 t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv  176 (315)
T KOG0279|consen   98 TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV  176 (315)
T ss_pred             EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE
Confidence            3445577778888776  8999999999999999997554 44444433  788999999997  678999999999999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ||+++.+....+ ..|.+. ++.++++|||.++++|+.||.+.+||++.++.++.+.
T Consensus       177 Wnl~~~~l~~~~-~gh~~~-v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~  231 (315)
T KOG0279|consen  177 WNLRNCQLRTTF-IGHSGY-VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE  231 (315)
T ss_pred             EccCCcchhhcc-cccccc-EEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc
Confidence            999999888887 666666 9999999999999999999999999999999877653

>KOG0286|consensus

Probab=99.92  E-value=3e-23  Score=129.03  Aligned_cols=131  Identities=24%  Similarity=0.370  Sum_probs=118.3

Q ss_pred             EEEEeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518          6 QTFVTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus         6 ~~~~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      +.-.+++|.+.|++++.   +++.+++|+.|...++||++.+.+.++|.+|++.|+++.|.|+|.-+++|+.|+..++||
T Consensus       178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyD  257 (343)
T KOG0286|consen  178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYD  257 (343)
T ss_pred             EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEe
Confidence            34445688888888774   899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         83 VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ++..+.+..+.......+|++++|+-.|++|++|..|..+.+||.-.++.+..+
T Consensus       258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L  311 (343)
T KOG0286|consen  258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVL  311 (343)
T ss_pred             ecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEe
Confidence            999998888866655566999999999999999999999999999988877654

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=1.3e-22  Score=139.76  Aligned_cols=125  Identities=16%  Similarity=0.172  Sum_probs=105.3

Q ss_pred             EeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCc--------eeeEEEecCCCeEEEEECCCCCE-EEEecCCC
Q psy11518          9 VTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRK--------QSGALMQHEGTITCLKFTPEGSH-LISCSDDG   76 (139)
Q Consensus         9 ~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~   76 (139)
                      ...+|...|.++.|   ++.+|++|+.|+.|++||+.++.        ++..+.+|...|.+++|+|++.. +++++.|+
T Consensus        69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg  148 (568)
T PTZ00420         69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS  148 (568)
T ss_pred             EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence            34578888998887   36899999999999999987542        34567889999999999998875 57899999


Q ss_pred             cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         77 SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .|++||+++++....+.  +.. .|.+++|+|+|.+|++++.|+.|+|||+++++.+..+
T Consensus       149 tIrIWDl~tg~~~~~i~--~~~-~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        149 FVNIWDIENEKRAFQIN--MPK-KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             eEEEEECCCCcEEEEEe--cCC-cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            99999999988766652  333 4999999999999999999999999999999877654

>KOG0271|consensus

Probab=99.92  E-value=5.6e-24  Score=136.49  Aligned_cols=126  Identities=27%  Similarity=0.353  Sum_probs=108.9

Q ss_pred             EEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCcee-eEEEecCCCeEEEEECC-----CCCEEEEecCCCc
Q psy11518          6 QTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQS-GALMQHEGTITCLKFTP-----EGSHLISCSDDGS   77 (139)
Q Consensus         6 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~   77 (139)
                      ..+...+|...|.|++|  ||+.|++|+.||+|++||+++++++ ..+.+|...|++++|.|     ..++||+++.||.
T Consensus       149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC
Confidence            34566788888888876  9999999999999999999998776 56899999999999976     5779999999999


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      +++||+..+..+..+ ..|... |+|+.|..+ .++++++.|++|++|+...|+...
T Consensus       229 vrIWd~~~~~~~~~l-sgHT~~-VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r  282 (480)
T KOG0271|consen  229 VRIWDTKLGTCVRTL-SGHTAS-VTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCR  282 (480)
T ss_pred             EEEEEccCceEEEEe-ccCccc-eEEEEEcCC-ceEEecCCCceEEEEEccchhHHH
Confidence            999999998888887 566655 999999743 489999999999999998876544

>KOG0285|consensus

Probab=99.92  E-value=7.5e-24  Score=135.02  Aligned_cols=132  Identities=21%  Similarity=0.368  Sum_probs=118.3

Q ss_pred             eeeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEE
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIA   79 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (139)
                      |++.+.+.  +|.+.|.|+.+  .++++++|+.|++++|||+.+++...++.+|...|..+++++...|+++++.|++|+
T Consensus       141 wKl~rVi~--gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VK  218 (460)
T KOG0285|consen  141 WKLYRVIS--GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVK  218 (460)
T ss_pred             ceehhhhh--hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeE
Confidence            44445444  67777777775  788999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         80 IFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .||+...+.++.+ ..|-.+ |.+++.+|.-..|++|+.|..+++||+++...+..+.
T Consensus       219 CwDLe~nkvIR~Y-hGHlS~-V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~  274 (460)
T KOG0285|consen  219 CWDLEYNKVIRHY-HGHLSG-VYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS  274 (460)
T ss_pred             EEechhhhhHHHh-ccccce-eEEEeccccceeEEecCCcceEEEeeecccceEEEec
Confidence            9999999999988 677776 9999999999999999999999999999988877653

>KOG0273|consensus

Probab=99.91  E-value=3.1e-23  Score=135.74  Aligned_cols=128  Identities=23%  Similarity=0.354  Sum_probs=114.7

Q ss_pred             EEEEEeecceeeEEEEecC--CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCC---------CEEEEec
Q psy11518          5 TQTFVTHSHTASVRSVAAT--SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEG---------SHLISCS   73 (139)
Q Consensus         5 ~~~~~~~~~~~~v~~~~~~--~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~   73 (139)
                      +.++.  +|.+.|.++.|+  +.+|++++.|++++||..........++.|...|..+.|+|.+         ..+++++
T Consensus       352 ~~t~~--GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas  429 (524)
T KOG0273|consen  352 VKTFI--GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS  429 (524)
T ss_pred             ceeee--cccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee
Confidence            34444  689999999984  9999999999999999998888999999999999999999854         3689999


Q ss_pred             CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         74 DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        74 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .|+.|++||+..+.++..+ ..|..+ |++++|+|+|+++++|+.||.|++|+.++++..+..
T Consensus       430 ~dstV~lwdv~~gv~i~~f-~kH~~p-VysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  430 FDSTVKLWDVESGVPIHTL-MKHQEP-VYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             cCCeEEEEEccCCceeEee-ccCCCc-eEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence            9999999999999999998 566655 999999999999999999999999999999988764

>KOG0315|consensus

Probab=99.90  E-value=5.9e-22  Score=121.16  Aligned_cols=84  Identities=24%  Similarity=0.461  Sum_probs=71.3

Q ss_pred             EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc-eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         51 MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW-QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        51 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      +.|..-+..+.+||++++||+++.|.++++|+..+. +....+ ..|... +.+.+|+.|+++|++|+.|+.+++||++.
T Consensus       212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l-~gh~rW-vWdc~FS~dg~YlvTassd~~~rlW~~~~  289 (311)
T KOG0315|consen  212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVL-TGHQRW-VWDCAFSADGEYLVTASSDHTARLWDLSA  289 (311)
T ss_pred             ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEe-ecCCce-EEeeeeccCccEEEecCCCCceeeccccc
Confidence            457778889999999999999999999999999887 233333 455555 99999999999999999999999999999


Q ss_pred             CceeEEE
Q psy11518        130 GRSAYIT  136 (139)
Q Consensus       130 ~~~~~~~  136 (139)
                      ++.+.+.
T Consensus       290 ~k~v~qy  296 (311)
T KOG0315|consen  290 GKEVRQY  296 (311)
T ss_pred             Cceeeec
Confidence            9977654

>KOG0291|consensus

Probab=99.90  E-value=1.2e-22  Score=139.46  Aligned_cols=121  Identities=26%  Similarity=0.425  Sum_probs=104.8

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ++.++|...+.++.+  ||+++++|+.||.|++||...+-+..+|..|.+.|+.+.|+..++.+++.+-||+|+.||+..
T Consensus       344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR  423 (893)
T KOG0291|consen  344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR  423 (893)
T ss_pred             eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence            456778888888876  999999999999999999999999999999999999999999999999999999999999843


Q ss_pred             --------------------------------------------ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCe
Q psy11518         86 --------------------------------------------WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT  121 (139)
Q Consensus        86 --------------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~  121 (139)
                                                                  |+.+..+ .+|. +||.+++|+|++..|++++.|.+
T Consensus       424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL-sGHE-gPVs~l~f~~~~~~LaS~SWDkT  501 (893)
T KOG0291|consen  424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL-SGHE-GPVSGLSFSPDGSLLASGSWDKT  501 (893)
T ss_pred             cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh-cCCC-CcceeeEEccccCeEEeccccce
Confidence                                                        2222222 3344 45999999999999999999999


Q ss_pred             EEEEEcCCC
Q psy11518        122 LRTWNLVKG  130 (139)
Q Consensus       122 i~i~d~~~~  130 (139)
                      |++||+-..
T Consensus       502 VRiW~if~s  510 (893)
T KOG0291|consen  502 VRIWDIFSS  510 (893)
T ss_pred             EEEEEeecc
Confidence            999998654

>KOG0276|consensus

Probab=99.90  E-value=3.6e-23  Score=139.64  Aligned_cols=132  Identities=25%  Similarity=0.338  Sum_probs=115.2

Q ss_pred             eeeEEEEEeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCC--CCEEEEecCCC
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE--GSHLISCSDDG   76 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~   76 (139)
                      |...++|.  ||...|+++.+   |.+.+++++-|++|++|.+....+..++++|...|+|+.|-+.  ..+|++|+.|.
T Consensus       130 wa~~qtfe--GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~  207 (794)
T KOG0276|consen  130 WACEQTFE--GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDL  207 (794)
T ss_pred             eeeeeEEc--CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCc
Confidence            55677777  56667777765   8899999999999999999999999999999999999999874  46999999999


Q ss_pred             cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         77 SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .+++||.++..++.++ .+|... |+.+.|+|.-.++++|++||+++||+..+-+....++
T Consensus       208 tiKvWDyQtk~CV~TL-eGHt~N-vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn  266 (794)
T KOG0276|consen  208 TIKVWDYQTKSCVQTL-EGHTNN-VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLN  266 (794)
T ss_pred             eEEEeecchHHHHHHh-hccccc-ceEEEecCCCcEEEEecCCccEEEecCcceehhhhhh
Confidence            9999999999998888 556655 9999999999999999999999999998876655443

>KOG0316|consensus

Probab=99.90  E-value=1.9e-22  Score=122.51  Aligned_cols=123  Identities=18%  Similarity=0.332  Sum_probs=112.9

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ...+.++|.++.|  +|++.++++.|.+|++|++..+..++++.+|...|..++.+.+...+++|+.|..+.+||+.+++
T Consensus        13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk   92 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK   92 (307)
T ss_pred             ecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe
Confidence            3467888999998  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ..+.+ ..|... |..+.|+.+...+++|+.|..+++||.++....+
T Consensus        93 v~Rr~-rgH~aq-VNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~eP  137 (307)
T KOG0316|consen   93 VDRRF-RGHLAQ-VNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEP  137 (307)
T ss_pred             eeeec-ccccce-eeEEEecCcceEEEeccccceeEEEEcccCCCCc
Confidence            99998 566555 9999999999999999999999999998765443

>KOG0295|consensus

Probab=99.89  E-value=7.7e-22  Score=125.77  Aligned_cols=125  Identities=29%  Similarity=0.426  Sum_probs=109.7

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCC----------C-----CEEEEe
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE----------G-----SHLISC   72 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~   72 (139)
                      +.+|...+.-+.+  ||.++++++.|.+|++|-+.++++...+.+|+.+|.|++|.|.          +     .++.++
T Consensus       231 ~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~  310 (406)
T KOG0295|consen  231 FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG  310 (406)
T ss_pred             ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence            3456666666665  9999999999999999999999999999999999999999762          2     478999


Q ss_pred             cCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         73 SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        73 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +.|+.|++||+.++.++..+ ..|... |..++|+|.|++|+++.+|+++++||+++++....+
T Consensus       311 SrDktIk~wdv~tg~cL~tL-~ghdnw-Vr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~  372 (406)
T KOG0295|consen  311 SRDKTIKIWDVSTGMCLFTL-VGHDNW-VRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL  372 (406)
T ss_pred             cccceEEEEeccCCeEEEEE-ecccce-eeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc
Confidence            99999999999999999998 666666 999999999999999999999999999998876654

>KOG0283|consensus

Probab=99.89  E-value=3e-22  Score=138.00  Aligned_cols=125  Identities=19%  Similarity=0.270  Sum_probs=111.3

Q ss_pred             eecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      +.||.+.|++++| ..++|++++.|.+|++|++....++..|. |...|+|++|+| |.+|+++|+-||.+++|++...+
T Consensus       365 f~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~  443 (712)
T KOG0283|consen  365 FKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK  443 (712)
T ss_pred             hhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCcCe
Confidence            4589999999999 88899999999999999999999999996 999999999999 88999999999999999998877


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ...-..  -+.- |++++|.|+|+..++|+.+|.+++|++...+.+....+
T Consensus       444 Vv~W~D--l~~l-ITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I  491 (712)
T KOG0283|consen  444 VVDWND--LRDL-ITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI  491 (712)
T ss_pred             eEeehh--hhhh-heeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence            665542  2233 99999999999999999999999999998887766543

>KOG0282|consensus

Probab=99.89  E-value=3.1e-23  Score=135.87  Aligned_cols=125  Identities=22%  Similarity=0.360  Sum_probs=112.4

Q ss_pred             EEEeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccC-CceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518          7 TFVTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVK-RKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      .....+|+..|.++.|   .+.+|++++.|+.|+||++-. ++++.++.+|..+|..++|+++|..+++++.|+.|++||
T Consensus       207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD  286 (503)
T KOG0282|consen  207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD  286 (503)
T ss_pred             eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence            3455689999998887   789999999999999999976 789999999999999999999999999999999999999


Q ss_pred             eCCceEEEEEEeCCCCcceeEEEEccCC-cEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         83 VGSWQLEKLFKKAHKGTAVNHISIHPSG-KLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      +.+|+.+..+..   +..+.++.|+|++ +.+++|+.|+.|+-||+|+++.++
T Consensus       287 tETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq  336 (503)
T KOG0282|consen  287 TETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ  336 (503)
T ss_pred             cccceEEEEEec---CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH
Confidence            999999999843   3338999999988 789999999999999999988654

>PTZ00421 coronin; Provisional

Probab=99.88  E-value=1e-20  Score=129.41  Aligned_cols=121  Identities=23%  Similarity=0.330  Sum_probs=102.6

Q ss_pred             eecceeeEEEEec--C-CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         10 THSHTASVRSVAA--T-SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~-~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ..+|...|.++.|  + +++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||++++
T Consensus       121 L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg  200 (493)
T PTZ00421        121 LQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG  200 (493)
T ss_pred             ecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC
Confidence            3467778888877  3 468999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEc----CCCeEEEEEcCCCc
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVG----KDKTLRTWNLVKGR  131 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~  131 (139)
                      +....+ ..|.+.....+.|.+++..+++++    .|+.|++||+++..
T Consensus       201 ~~v~tl-~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        201 TIVSSV-EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             cEEEEE-ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            887776 455544356788999888777654    47999999998754

>KOG0319|consensus

Probab=99.88  E-value=1.5e-21  Score=133.55  Aligned_cols=123  Identities=24%  Similarity=0.484  Sum_probs=110.6

Q ss_pred             cceeeEEE--EecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRS--VAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~--~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      .|...|+|  ++++.++++||+.|.+.++|+++......++.+|+..|.++.|+|..+.++|++.|++|++|.+.+..+.
T Consensus       461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl  540 (775)
T KOG0319|consen  461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL  540 (775)
T ss_pred             hhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee
Confidence            34444554  5569999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..+ .+|... |....|-.++++|++++.||.+.+|++.++..+..+
T Consensus       541 kT~-eGH~~a-Vlra~F~~~~~qliS~~adGliKlWnikt~eC~~tl  585 (775)
T KOG0319|consen  541 KTF-EGHTSA-VLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTL  585 (775)
T ss_pred             eee-cCccce-eEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhh
Confidence            999 556655 999999999999999999999999999998776554

>KOG0284|consensus

Probab=99.88  E-value=1.2e-22  Score=131.14  Aligned_cols=120  Identities=19%  Similarity=0.328  Sum_probs=107.6

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      |...|.+++|  +...+++++.||+|+|||....+....+.+|...|.+++|+|.-..++++++|..|++||.+++.++.
T Consensus       179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~  258 (464)
T KOG0284|consen  179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLA  258 (464)
T ss_pred             hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhh
Confidence            3366777766  88899999999999999999998888899999999999999999999999999999999999999998


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      .+ ..|+.. |..+.|+|++++|++++.|..+++||+++-+.++
T Consensus       259 tl-h~HKnt-Vl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~  300 (464)
T KOG0284|consen  259 TL-HGHKNT-VLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF  300 (464)
T ss_pred             hh-hhccce-EEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH
Confidence            88 566655 9999999999999999999999999999655443

>KOG0285|consensus

Probab=99.88  E-value=5.2e-21  Score=122.22  Aligned_cols=127  Identities=21%  Similarity=0.381  Sum_probs=113.5

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +...||...|..+.+  -..++.+++.|+.|+.||++..+.+..+.+|-+.|.|++.+|.-..+++|+.|..+++||+++
T Consensus       187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt  266 (460)
T KOG0285|consen  187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT  266 (460)
T ss_pred             EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence            445578777777776  677999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ...+..+ ..|... |..+.+.|-...+++|+.|++|++||++.|+.....
T Consensus       267 r~~V~~l-~GH~~~-V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tl  315 (460)
T KOG0285|consen  267 RASVHVL-SGHTNP-VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITL  315 (460)
T ss_pred             cceEEEe-cCCCCc-ceeEEeecCCCceEEecCCceEEEeeeccCceeEee
Confidence            9888888 556655 999999998999999999999999999998876543

>KOG0296|consensus

Probab=99.87  E-value=1.9e-20  Score=119.53  Aligned_cols=128  Identities=23%  Similarity=0.299  Sum_probs=113.9

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +...+|...|+++.|  +|.+||+|+.+|.|+||...++.....+...-..+.-+.|+|.+..|+.|+.||.+.+|.+.+
T Consensus       100 ~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~  179 (399)
T KOG0296|consen  100 GELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS  179 (399)
T ss_pred             eEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC
Confidence            455689999999998  999999999999999999999988888875667788899999999999999999999999998


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ....+.+ ..|.. ++++-.|.|+|+.++++..||.|++||+.+++++..++
T Consensus       180 ~~~~kv~-~Gh~~-~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  180 QALCKVM-SGHNS-PCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             cceeeEe-cCCCC-CcccccccCCCceEEEEecCceEEEEecCCCceeEEec
Confidence            7666666 44444 49999999999999999999999999999999998765

>KOG0318|consensus

Probab=99.87  E-value=2.6e-20  Score=123.70  Aligned_cols=128  Identities=23%  Similarity=0.410  Sum_probs=112.7

Q ss_pred             eecceeeEEEEec--C-CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         10 THSHTASVRSVAA--T-SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~-~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ..||...++++.+  . .-.+++|+.|+.|.+|+=..-+...++..|...|.|+.|+|||+.+++.+.||++.+||-.++
T Consensus       143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence            3467788888887  3 336899999999999997777777888899999999999999999999999999999999999


Q ss_pred             eEEEEEE--eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         87 QLEKLFK--KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        87 ~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +....+.  .+|.+. |.+++|+||+..+++++.|.+++|||+.+.+.+..+.+
T Consensus       223 e~vg~l~~~~aHkGs-IfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~  275 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGS-IFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM  275 (603)
T ss_pred             cEEEEecCCCCcccc-EEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec
Confidence            9988884  356666 99999999999999999999999999999988887754

>KOG0315|consensus

Probab=99.87  E-value=1.1e-20  Score=115.65  Aligned_cols=111  Identities=23%  Similarity=0.460  Sum_probs=96.1

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .-.++.++++.|++|+ ...|++||+.++.  ++.++.+|...|+.+.|..+|+++++|+.||.+++||++.....+.+ 
T Consensus        44 NrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-  121 (311)
T KOG0315|consen   44 NRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-  121 (311)
T ss_pred             eeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-
Confidence            3445556888888776 4789999998764  68999999999999999999999999999999999999997777776 


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                       .+. .+|.++..+|+..-|+++..+|.|++||+.+.
T Consensus       122 -~~~-spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen  122 -QHN-SPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             -cCC-CCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence             334 45999999999999999999999999999875

>KOG0283|consensus

Probab=99.87  E-value=2e-21  Score=134.07  Aligned_cols=120  Identities=20%  Similarity=0.379  Sum_probs=103.3

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccC----------------------------------------------
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVK----------------------------------------------   43 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~----------------------------------------------   43 (139)
                      .|.+.|.++.|  ||++||+|++|+.|+||.+..                                              
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            68889999998  999999999999999998754                                              


Q ss_pred             --------------CceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEcc-
Q psy11518         44 --------------RKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP-  108 (139)
Q Consensus        44 --------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-  108 (139)
                                    .+++..|.+|.+.|..++|+.+ .+|++++.|.++++|++....++..+  .|... |+|++|+| 
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F--~Hndf-VTcVaFnPv  420 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVF--SHNDF-VTCVAFNPV  420 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEE--ecCCe-eEEEEeccc
Confidence                          0123345689999999999965 58899999999999999999999888  56666 99999999 


Q ss_pred             CCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518        109 SGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus       109 ~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      |.+++++|+-|+.++||++...+.+.-
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~Vv~W  447 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKVVDW  447 (712)
T ss_pred             CCCcEeecccccceEEeecCcCeeEee
Confidence            888999999999999999988766543

>KOG0275|consensus

Probab=99.87  E-value=1.3e-22  Score=128.59  Aligned_cols=122  Identities=21%  Similarity=0.321  Sum_probs=112.3

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE-ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      +..+|.|++|  |.+++++|+.||.|++|.+.+|.++..|. .|...|+|++|+.++..+++++.|..+++-.+..|+.+
T Consensus       262 md~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L  341 (508)
T KOG0275|consen  262 MDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL  341 (508)
T ss_pred             cccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence            4667888888  89999999999999999999999999987 79999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..+ ..|... |+...|.++|..+++++.||+|++|+..+.+.+..+
T Consensus       342 KEf-rGHsSy-vn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf  386 (508)
T KOG0275|consen  342 KEF-RGHSSY-VNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF  386 (508)
T ss_pred             HHh-cCcccc-ccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc
Confidence            988 677766 999999999999999999999999999988776554

>KOG0318|consensus

Probab=99.87  E-value=4.8e-20  Score=122.44  Aligned_cols=128  Identities=24%  Similarity=0.484  Sum_probs=106.5

Q ss_pred             eeeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE---ecCCCeEEEEECCCCCEEEEecCCC
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM---QHEGTITCLKFTPEGSHLISCSDDG   76 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~   76 (139)
                      |++...++  .|..-|.|+.|  ||.++++++.||.+.+||=.+++.+..+.   +|++.|.+++|+||++.+++++.|.
T Consensus       180 FKFk~s~r--~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk  257 (603)
T KOG0318|consen  180 FKFKSSFR--EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK  257 (603)
T ss_pred             eeeeeccc--ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc
Confidence            44444444  45556666665  99999999999999999999999999988   8999999999999999999999999


Q ss_pred             cEEEEEeCCceEEEEEE------------------------------------------eCCCCcceeEEEEccCCcEEE
Q psy11518         77 SIAIFRVGSWQLEKLFK------------------------------------------KAHKGTAVNHISIHPSGKLAL  114 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~------------------------------------------~~~~~~~v~~~~~~~~~~~l~  114 (139)
                      .+++||+.+.++...+.                                          ..|... |+++..+|++++|+
T Consensus       258 t~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~-ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  258 TIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKS-ITALTVSPDGKTIY  336 (603)
T ss_pred             eEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccc-eeEEEEcCCCCEEE
Confidence            99999997655443331                                          223333 99999999999999


Q ss_pred             EEcCCCeEEEEEcCCCce
Q psy11518        115 SVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus       115 ~~~~d~~i~i~d~~~~~~  132 (139)
                      +|+.||.|.-|+..++..
T Consensus       337 SgsyDG~I~~W~~~~g~~  354 (603)
T KOG0318|consen  337 SGSYDGHINSWDSGSGTS  354 (603)
T ss_pred             eeccCceEEEEecCCccc
Confidence            999999999999987754

>KOG0291|consensus

Probab=99.87  E-value=5.2e-20  Score=126.67  Aligned_cols=132  Identities=19%  Similarity=0.326  Sum_probs=113.8

Q ss_pred             eeeEEEEEeecceeeEEEEec--CCcEEEEeCCC-CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcE
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA--TSKLAASSGAD-ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSI   78 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~-~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (139)
                      |.+++.+....  .+|..+.+  .|..++.|+.. |.+.+|+..+..-+...++|...+++++++|||+++|+|+.||.|
T Consensus       297 f~lih~LSis~--~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV  374 (893)
T KOG0291|consen  297 FNLIHSLSISD--QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV  374 (893)
T ss_pred             ceEEEEeeccc--ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence            45566666543  35556666  59999988864 899999999998899999999999999999999999999999999


Q ss_pred             EEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++||.+.+-+..++ ..|... |+.+.|+..++.+++.+-||+|+.||+...+...++.
T Consensus       375 KvWn~~SgfC~vTF-teHts~-Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft  431 (893)
T KOG0291|consen  375 KVWNTQSGFCFVTF-TEHTSG-VTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFT  431 (893)
T ss_pred             EEEeccCceEEEEe-ccCCCc-eEEEEEEecCCEEEEeecCCeEEeeeecccceeeeec
Confidence            99999999999988 677766 9999999999999999999999999998877665543

>KOG0302|consensus

Probab=99.86  E-value=6.6e-21  Score=122.21  Aligned_cols=119  Identities=22%  Similarity=0.402  Sum_probs=97.1

Q ss_pred             EeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518          9 VTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus         9 ~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      .+.+|...|-.+.|   ....|++|+.||+|+|||++.+.  .....+.|.+.|+.++|+.+..+||+|+.||.+++||+
T Consensus       252 Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDL  331 (440)
T KOG0302|consen  252 PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDL  331 (440)
T ss_pred             cccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEh
Confidence            34468888877777   78899999999999999998872  22334789999999999998889999999999999999


Q ss_pred             CCce---EEEEEEeCCCCcceeEEEEccCC-cEEEEEcCCCeEEEEEcCC
Q psy11518         84 GSWQ---LEKLFKKAHKGTAVNHISIHPSG-KLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        84 ~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~  129 (139)
                      ++.+   ++..+ ..|+.. |+++.|+|.. ..+++++.|.+|.+||+.-
T Consensus       332 R~~~~~~pVA~f-k~Hk~p-ItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  332 RQFKSGQPVATF-KYHKAP-ITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             hhccCCCcceeE-EeccCC-eeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            8644   44555 445554 9999999954 5788889999999999863

>KOG0281|consensus

Probab=99.86  E-value=8.4e-22  Score=125.66  Aligned_cols=119  Identities=21%  Similarity=0.414  Sum_probs=93.9

Q ss_pred             eecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEE--------------------------------------
Q psy11518         10 THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALM--------------------------------------   51 (139)
Q Consensus        10 ~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~--------------------------------------   51 (139)
                      ..||.+.|.|+.++.+.+++|+.|.+|++||.++++++.++-                                      
T Consensus       233 L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~  312 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITL  312 (499)
T ss_pred             hhcCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHH
Confidence            458999999999999999999999999999999998766543                                      


Q ss_pred             -----ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         52 -----QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        52 -----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                           +|.+.|+.+.|  +.+++++++.|.+|++|+..+++.+..+ .+|..+ |.|+.+  .++++++|+.|.+|++||
T Consensus       313 rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl-~gHkRG-IAClQY--r~rlvVSGSSDntIRlwd  386 (499)
T KOG0281|consen  313 RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTL-NGHKRG-IACLQY--RDRLVVSGSSDNTIRLWD  386 (499)
T ss_pred             HHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhh-hccccc-ceehhc--cCeEEEecCCCceEEEEe
Confidence                 45556666666  3347777777777777777777777777 566666 777766  588999999999999999


Q ss_pred             cCCCceeE
Q psy11518        127 LVKGRSAY  134 (139)
Q Consensus       127 ~~~~~~~~  134 (139)
                      +..|..+.
T Consensus       387 i~~G~cLR  394 (499)
T KOG0281|consen  387 IECGACLR  394 (499)
T ss_pred             ccccHHHH
Confidence            99887654

>KOG0264|consensus

Probab=99.86  E-value=1.2e-20  Score=122.86  Aligned_cols=122  Identities=23%  Similarity=0.401  Sum_probs=103.2

Q ss_pred             EEEeecceeeEEEEec---CCcEEEEeCCCCeEEEEEcc--CCceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEE
Q psy11518          7 TFVTHSHTASVRSVAA---TSKLAASSGADETVVLYDMV--KRKQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAI   80 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~--~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~   80 (139)
                      ...+.+|...|..++|   +..++++++.|+.+.|||.+  +.++.....+|.+.|.|++|+| ++..||+|+.|++|.+
T Consensus       220 ~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~L  299 (422)
T KOG0264|consen  220 KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVAL  299 (422)
T ss_pred             eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEE
Confidence            3455688889999888   78899999999999999999  5677778889999999999999 6778899999999999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCC-cEEEEEcCCCeEEEEEcCC
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSG-KLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~  129 (139)
                      ||+++..........|... |..+.|+|+. ..|++++.|+++.+||+..
T Consensus       300 wDlRnL~~~lh~~e~H~de-v~~V~WSPh~etvLASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  300 WDLRNLNKPLHTFEGHEDE-VFQVEWSPHNETVLASSGTDRRLNVWDLSR  348 (422)
T ss_pred             eechhcccCceeccCCCcc-eEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence            9999876544443455555 9999999955 4788889999999999964

>KOG0316|consensus

Probab=99.86  E-value=1.4e-20  Score=114.56  Aligned_cols=133  Identities=22%  Similarity=0.307  Sum_probs=102.2

Q ss_pred             eeEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518          3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      .+++++..++++..=.+..+|+..+++++.|..+.+||+++++....+.+|.+.|+.++|+.+...+++|+.|..+++||
T Consensus        50 ~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wD  129 (307)
T KOG0316|consen   50 ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWD  129 (307)
T ss_pred             ceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEE
Confidence            46778887777665556667999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCce--EEEEEE------------------------------------eCCCCcceeEEEEccCCcEEEEEcCCCeEEE
Q psy11518         83 VGSWQ--LEKLFK------------------------------------KAHKGTAVNHISIHPSGKLALSVGKDKTLRT  124 (139)
Q Consensus        83 ~~~~~--~~~~~~------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  124 (139)
                      ++...  +++.+.                                    ....+.||++++|+++++..+.++.|+.+++
T Consensus       130 CRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrL  209 (307)
T KOG0316|consen  130 CRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRL  209 (307)
T ss_pred             cccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeee
Confidence            97643  222221                                    1112335666666666666666666666666


Q ss_pred             EEcCCCceeEE
Q psy11518        125 WNLVKGRSAYI  135 (139)
Q Consensus       125 ~d~~~~~~~~~  135 (139)
                      .|-.+|+.+..
T Consensus       210 lDk~tGklL~s  220 (307)
T KOG0316|consen  210 LDKETGKLLKS  220 (307)
T ss_pred             cccchhHHHHH
Confidence            66666665543

>KOG0281|consensus

Probab=99.86  E-value=6e-22  Score=126.31  Aligned_cols=115  Identities=22%  Similarity=0.357  Sum_probs=105.5

Q ss_pred             ecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        11 ~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      -||...|+.+.|+.+++++++.|.+|++|+..+.+.+.++.+|+..|.|+++  .++++++|+.|.+|++||+..|.++.
T Consensus       317 vGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  317 VGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR  394 (499)
T ss_pred             hhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHH
Confidence            3788899999999999999999999999999999999999999999999988  78899999999999999999999999


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      .+ .+|..- |.++.|  |.+.+++|+.||+|++||+..+.
T Consensus       395 vL-eGHEeL-vRciRF--d~krIVSGaYDGkikvWdl~aal  431 (499)
T KOG0281|consen  395 VL-EGHEEL-VRCIRF--DNKRIVSGAYDGKIKVWDLQAAL  431 (499)
T ss_pred             HH-hchHHh-hhheee--cCceeeeccccceEEEEeccccc
Confidence            88 566666 999999  57889999999999999998764

>KOG0269|consensus

Probab=99.86  E-value=3.7e-21  Score=132.26  Aligned_cols=124  Identities=22%  Similarity=0.378  Sum_probs=107.7

Q ss_pred             eecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCC
Q psy11518         10 THSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        10 ~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +..|.-.+.++.|   ...+|++|+.||.|++||++..+...++.+....|..+.|+| .+..++++...|.+.+||++.
T Consensus       129 f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq  208 (839)
T KOG0269|consen  129 FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ  208 (839)
T ss_pred             hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccC
Confidence            4567778888887   788999999999999999999999989888888999999999 578899999999999999998


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ..........|.+. |.++.|+|++.+|++||.|+.|+|||+.+.+...
T Consensus       209 p~r~~~k~~AH~Gp-V~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~  256 (839)
T KOG0269|consen  209 PDRCEKKLTAHNGP-VLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP  256 (839)
T ss_pred             chhHHHHhhcccCc-eEEEeecCCCceeeecCCCccEEEEeccCCCccc
Confidence            76544443677776 9999999999999999999999999998665443

>KOG0289|consensus

Probab=99.86  E-value=5.1e-20  Score=119.97  Aligned_cols=125  Identities=22%  Similarity=0.326  Sum_probs=106.8

Q ss_pred             cceeeEEEEe--cCCcEEEEeCCCCeEEEEEccCCceeeEEEec--CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         12 SHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQH--EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        12 ~~~~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      .|..+|+.+.  +.|+++++++.|+.+.+.|.+++..+......  .-.+++.+|+|||..|.+|..|+.+++||+.++.
T Consensus       301 ~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~  380 (506)
T KOG0289|consen  301 PHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT  380 (506)
T ss_pred             cccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence            4666677666  49999999999999999999999887766542  2358999999999999999999999999999998


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ....| ..|.+. |..++|+.||.+++++.+|+.|++||+|..+....+.+
T Consensus       381 ~~a~F-pght~~-vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l  429 (506)
T KOG0289|consen  381 NVAKF-PGHTGP-VKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL  429 (506)
T ss_pred             ccccC-CCCCCc-eeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence            77777 455554 99999999999999999999999999998877666543

>KOG0643|consensus

Probab=99.85  E-value=9.4e-20  Score=112.56  Aligned_cols=127  Identities=16%  Similarity=0.278  Sum_probs=109.8

Q ss_pred             EEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518          7 TFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      .+..++|+.+++.+.+  +|.+|.+++.|....+|-..+++.+.++.+|.+.|.|+..+.+.+.+++|+.|..+++||+.
T Consensus         3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~   82 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE   82 (327)
T ss_pred             ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence            3556789999999998  89999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceEEEEEEeC---------------------------------------------------CCCcceeEEEEccCCcEE
Q psy11518         85 SWQLEKLFKKA---------------------------------------------------HKGTAVNHISIHPSGKLA  113 (139)
Q Consensus        85 ~~~~~~~~~~~---------------------------------------------------~~~~~v~~~~~~~~~~~l  113 (139)
                      +|+.+..+..+                                                   .+...++.+-|.|-+++|
T Consensus        83 tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   83 TGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             CCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            87655433211                                                   112347778899999999


Q ss_pred             EEEcCCCeEEEEEcCCCcee
Q psy11518        114 LSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus       114 ~~~~~d~~i~i~d~~~~~~~  133 (139)
                      ++|.+||.|.+||+++++..
T Consensus       163 i~Ghe~G~is~~da~~g~~~  182 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKEL  182 (327)
T ss_pred             EEecCCCcEEEEEcccCcee
Confidence            99999999999999998554

>KOG0303|consensus

Probab=99.85  E-value=1.8e-20  Score=120.94  Aligned_cols=123  Identities=22%  Similarity=0.337  Sum_probs=109.4

Q ss_pred             eecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-------ceeeEEEecCCCeEEEEECCC-CCEEEEecCCCcE
Q psy11518         10 THSHTASVRSVAA---TSKLAASSGADETVVLYDMVKR-------KQSGALMQHEGTITCLKFTPE-GSHLISCSDDGSI   78 (139)
Q Consensus        10 ~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i   78 (139)
                      ..||.++|.++.|   +...+|+|++|.+|+||.+...       +++..+.+|...|..++|+|. .+.|++++.|..|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            3579999999987   8899999999999999998643       567889999999999999994 5678999999999


Q ss_pred             EEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      .+|++.+++..-.+.  |... |.+++|+.||.++++.+.|..|+|||.++++.+..
T Consensus       157 ~iWnv~tgeali~l~--hpd~-i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e  210 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD--HPDM-VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE  210 (472)
T ss_pred             EEEeccCCceeeecC--CCCe-EEEEEeccCCceeeeecccceeEEEcCCCCcEeee
Confidence            999999999877763  6665 99999999999999999999999999999988764

>KOG0645|consensus

Probab=99.85  E-value=3.6e-19  Score=110.01  Aligned_cols=123  Identities=22%  Similarity=0.430  Sum_probs=103.9

Q ss_pred             eeeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC---ceeeEEEecCCCeEEEEECCCCCEEEEecCCC
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKR---KQSGALMQHEGTITCLKFTPEGSHLISCSDDG   76 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   76 (139)
                      |+.+.++.  ||...|.|++|  +|++||+++.|.+|-||.+..+   ++...++.|...|..+.|+|...+|++++.|.
T Consensus        95 fecv~~lE--GHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDn  172 (312)
T KOG0645|consen   95 FECVATLE--GHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDN  172 (312)
T ss_pred             eeEEeeee--ccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCC
Confidence            45555555  67777777777  9999999999999999998744   56788999999999999999999999999999


Q ss_pred             cEEEEEeC---CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         77 SIAIFRVG---SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        77 ~i~~~d~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      +|++|+-.   ..++...+ ..|+. .|.+++|++.|..++++++|+.++||.+.
T Consensus       173 TIk~~~~~~dddW~c~~tl-~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~  225 (312)
T KOG0645|consen  173 TIKVYRDEDDDDWECVQTL-DGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLY  225 (312)
T ss_pred             eEEEEeecCCCCeeEEEEe-cCccc-eEEEEEecCCCceEEEecCCcceEeeeec
Confidence            99999876   34456666 44444 49999999999999999999999999854

>KOG0284|consensus

Probab=99.85  E-value=9.9e-22  Score=126.89  Aligned_cols=124  Identities=23%  Similarity=0.400  Sum_probs=105.8

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecC-CCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHE-GTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ..+.|..+|.++.|  ++.++++|..+|.|++|++.-. .+..++.|. ..|.+++|+|+...+++++.||.|++||...
T Consensus       133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence            34578888888888  9999999999999999997544 344445554 8999999999999999999999999999988


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ......+ ..|.-. |.+++|+|....+++++.|..|.+||.+++..+.+
T Consensus       212 ~kee~vL-~GHgwd-VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~t  259 (464)
T KOG0284|consen  212 PKEERVL-RGHGWD-VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLAT  259 (464)
T ss_pred             Cchhhee-ccCCCC-cceeccCCccceeEEccCCceeEeecCCCcchhhh
Confidence            8777776 444444 99999999999999999999999999999987654

>KOG0277|consensus

Probab=99.85  E-value=4.3e-20  Score=113.33  Aligned_cols=119  Identities=22%  Similarity=0.277  Sum_probs=102.9

Q ss_pred             ecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCc
Q psy11518         11 HSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ++|...|.++.+   ++..+++++-|++|++|+...++.+.++.+|...|...+|+| .++.+++++.|+.+++||++..
T Consensus       101 kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~  180 (311)
T KOG0277|consen  101 KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSP  180 (311)
T ss_pred             HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCC
Confidence            467788888888   778899999999999999999999999999999999999999 6889999999999999999876


Q ss_pred             eEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ...-.+ ..|... +.++.|+. +...+++|+.|+.|++||+++-+
T Consensus       181 gk~~~i-~ah~~E-il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r  224 (311)
T KOG0277|consen  181 GKFMSI-EAHNSE-ILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR  224 (311)
T ss_pred             CceeEE-Eeccce-eEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence            444444 455534 99999997 77789999999999999998754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.85  E-value=4.4e-19  Score=112.91  Aligned_cols=123  Identities=24%  Similarity=0.435  Sum_probs=106.8

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      +|..++.++.+  +++++++++.++.+.+|++.+++....+..|...+..+.|+|+++.+++++.++.+.+||+.+++..
T Consensus         7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~   86 (289)
T cd00200           7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECV   86 (289)
T ss_pred             ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccce
Confidence            67788888887  7799999999999999999998888888899999999999999999999999999999999987766


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..+ ..+... +.++.|+++++++++++.|+.+.+||+++++....+
T Consensus        87 ~~~-~~~~~~-i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  131 (289)
T cd00200          87 RTL-TGHTSY-VSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL  131 (289)
T ss_pred             EEE-eccCCc-EEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe
Confidence            666 344444 999999999889998888999999999977766554

>KOG0319|consensus

Probab=99.84  E-value=6.6e-20  Score=125.60  Aligned_cols=115  Identities=23%  Similarity=0.364  Sum_probs=108.0

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ..||...+.|++|  ..+.+++++.|.+|+||.+.+..++.+|.+|+..|..++|-.+++.|++++.||.+++|++.++.
T Consensus       501 LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e  580 (775)
T KOG0319|consen  501 LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE  580 (775)
T ss_pred             eeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence            3488888999988  77899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      +...+ ..|+.. |++++-+|....+++|+.||.|.+|.
T Consensus       581 C~~tl-D~H~Dr-vWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  581 CEMTL-DAHNDR-VWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             hhhhh-hhccce-eEEEeecCccceeEecCCCeEEEEee
Confidence            99998 677766 99999999999999999999999994

>KOG0265|consensus

Probab=99.84  E-value=7.4e-20  Score=114.36  Aligned_cols=126  Identities=21%  Similarity=0.343  Sum_probs=108.8

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeCC
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGS   85 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~   85 (139)
                      ...+|.+.|+.+.+  ++..+++++.|.+|+.||.++++.+..+++|..-|+.+.-+..|. ++.+++.|+++++||+++
T Consensus        85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~  164 (338)
T KOG0265|consen   85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK  164 (338)
T ss_pred             eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence            34589999999998  999999999999999999999999999999999999888554444 567899999999999998


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ...+..+.   ...+++++.|..++..+.+|+-|+.|.+||++.+...+..+
T Consensus       165 k~~~~t~~---~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~ls  213 (338)
T KOG0265|consen  165 KEAIKTFE---NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLS  213 (338)
T ss_pred             cchhhccc---cceeEEEEEecccccceeeccccCceeeeccccCcceEEee
Confidence            87777762   22339999999999999999999999999999887776643

>KOG0295|consensus

Probab=99.84  E-value=1.4e-19  Score=115.68  Aligned_cols=101  Identities=22%  Similarity=0.457  Sum_probs=95.2

Q ss_pred             cEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEE
Q psy11518         25 KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHI  104 (139)
Q Consensus        25 ~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~  104 (139)
                      +++.+++.|++|++||+.++.++.++.+|...|..++|+|.|+|++++..|+.+++||+++.++...+ ..|..- ++++
T Consensus       305 ~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~-~ah~hf-vt~l  382 (406)
T KOG0295|consen  305 QVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL-EAHEHF-VTSL  382 (406)
T ss_pred             cEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc-CCCcce-eEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999888 466666 9999


Q ss_pred             EEccCCcEEEEEcCCCeEEEEEc
Q psy11518        105 SIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus       105 ~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      +|+.+-.++++|+-|-.+.+|.-
T Consensus       383 Dfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  383 DFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             ecCCCCceEEeccccceeeeeec
Confidence            99999999999999999999964

>KOG0647|consensus

Probab=99.84  E-value=1.1e-19  Score=113.67  Aligned_cols=122  Identities=21%  Similarity=0.306  Sum_probs=100.4

Q ss_pred             eeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-cee-eEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         14 TASVRSVAA---TSKLAASSGADETVVLYDMVKR-KQS-GALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        14 ~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ...|.+++|   ...++++++-|++|++|+++.. ... .....|.++|.+++|+.+|..+++|+.|+.+++||+.+++.
T Consensus        27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~  106 (347)
T KOG0647|consen   27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQV  106 (347)
T ss_pred             ccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCe
Confidence            445666666   5677889999999999999763 322 34557899999999999999999999999999999999976


Q ss_pred             EEEEEeCCCCcceeEEEEccCCc--EEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGK--LALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ...-  .|... |..+.|-+...  .|++|+.|.+|+.||+|+..++.++++
T Consensus       107 ~~v~--~Hd~p-vkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L  155 (347)
T KOG0647|consen  107 SQVA--AHDAP-VKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL  155 (347)
T ss_pred             eeee--ecccc-eeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence            6554  45544 88898887554  899999999999999999999888765

>PTZ00420 coronin; Provisional

Probab=99.84  E-value=1.2e-18  Score=120.44  Aligned_cols=125  Identities=17%  Similarity=0.262  Sum_probs=98.5

Q ss_pred             eecceeeEEEEec--CCc-EEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         10 THSHTASVRSVAA--TSK-LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~-~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ..+|...|.++.|  ++. .+++++.|+.|++||+.+++.+..+. |...|.+++|+|+|++|++++.|+.|++||++++
T Consensus       121 L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        121 LKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             eecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            3467778888887  555 45789999999999999998777775 5678999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCcc----eeEEEEccCCcEEEEEcCC----CeEEEEEcCC-CceeEEE
Q psy11518         87 QLEKLFKKAHKGTA----VNHISIHPSGKLALSVGKD----KTLRTWNLVK-GRSAYIT  136 (139)
Q Consensus        87 ~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~-~~~~~~~  136 (139)
                      +.+..+ ..|.+..    +....|++++.++++++.|    +.|++||+++ ++++..+
T Consensus       200 ~~i~tl-~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~  257 (568)
T PTZ00420        200 EIASSF-HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM  257 (568)
T ss_pred             cEEEEE-ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence            888776 4555431    2233456888999988766    4799999995 5555543

>KOG0296|consensus

Probab=99.84  E-value=7.2e-19  Score=112.39  Aligned_cols=124  Identities=22%  Similarity=0.431  Sum_probs=109.2

Q ss_pred             eecceeeEEEEe--cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      +.+|...+.+++  |+.+++++|+.|..-.+|+..++..+..+.+|+..|+++.|+.+|.+||||+.+|.|.+|+..++.
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~  139 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG  139 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc
Confidence            446777777776  589999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ....+.  .....+.-+.|||.+.+|+.|+.||.+.+|.+.++...+.
T Consensus       140 ~~~~~~--~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv  185 (399)
T KOG0296|consen  140 EQWKLD--QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKV  185 (399)
T ss_pred             eEEEee--cccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeE
Confidence            888873  2223388899999999999999999999999988644443

>KOG0265|consensus

Probab=99.84  E-value=1.3e-19  Score=113.33  Aligned_cols=125  Identities=23%  Similarity=0.357  Sum_probs=104.5

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEcc-CCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMV-KRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ..+|.+.|..+.|  +|..+++|+.|..|.+|++. ..+....+++|.+.|..+.|.++++.+++++.|..++.||.+++
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG  122 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG  122 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc
Confidence            4578888888887  99999999999999999954 44667888899999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +....+ ..|... +..++-+.-|. ++.+++.|+++++||+|+...+..+
T Consensus       123 ~~~rk~-k~h~~~-vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~  171 (338)
T KOG0265|consen  123 KRIRKH-KGHTSF-VNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF  171 (338)
T ss_pred             eeeehh-ccccce-eeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence            999888 566655 77777444444 6667889999999999966555443

>KOG0292|consensus

Probab=99.84  E-value=5.6e-20  Score=128.62  Aligned_cols=118  Identities=26%  Similarity=0.382  Sum_probs=111.0

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      +.+|.++|..+.|  .+.++++|+.|-.|++|+.++.+++.++.+|-..|..+.|++...++++++.|.+|++|+.+++.
T Consensus        47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~  126 (1202)
T KOG0292|consen   47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK  126 (1202)
T ss_pred             hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence            4578889988887  89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ++..+ .+|... |.|..|+|....+++++-|.+|++||+.-
T Consensus       127 ~iavl-tGHnHY-VMcAqFhptEDlIVSaSLDQTVRVWDisG  166 (1202)
T KOG0292|consen  127 CIAVL-TGHNHY-VMCAQFHPTEDLIVSASLDQTVRVWDISG  166 (1202)
T ss_pred             eEEEE-ecCceE-EEeeccCCccceEEEecccceEEEEeecc
Confidence            99998 777777 99999999999999999999999999864

>KOG0772|consensus

Probab=99.84  E-value=3.4e-20  Score=123.11  Aligned_cols=124  Identities=24%  Similarity=0.314  Sum_probs=99.7

Q ss_pred             EeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCce-eeEEE-----ecCCCeEEEEECCCCCEEEEecCCCcEE
Q psy11518          9 VTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQ-SGALM-----QHEGTITCLKFTPEGSHLISCSDDGSIA   79 (139)
Q Consensus         9 ~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (139)
                      .+.||...++|-+|   +.+.+++++.||++++||+...+. +..++     +..-.++.++|+|+++.+|+|+.||.|.
T Consensus       263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ  342 (641)
T KOG0772|consen  263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ  342 (641)
T ss_pred             ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence            35688888888887   677899999999999999976543 33333     2345688999999999999999999999


Q ss_pred             EEEeCCceE--EEEEEeCCCC-cceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         80 IFRVGSWQL--EKLFKKAHKG-TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        80 ~~d~~~~~~--~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +|+......  ...+...|.. ..|+++.|+++|++|++-+.|+.+++||+++.+.
T Consensus       343 ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk  398 (641)
T KOG0772|consen  343 IWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK  398 (641)
T ss_pred             eeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence            999865443  2333445554 2499999999999999999999999999998654

>KOG0645|consensus

Probab=99.84  E-value=2e-18  Score=106.74  Aligned_cols=115  Identities=29%  Similarity=0.460  Sum_probs=101.5

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC--ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      +|...|..++|  .|++|++|+-|.++.||.-..+  +++.++.+|+..|.|++|+++|++||++++|..+-+|.+....
T Consensus        59 ~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd  138 (312)
T KOG0645|consen   59 GHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD  138 (312)
T ss_pred             cchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence            67788888887  9999999999999999987654  6788899999999999999999999999999999999997543


Q ss_pred             ---EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         88 ---LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        88 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                         ....+ .+|... |-.+.|||...+|++++.|.+|++|+-.
T Consensus       139 Efec~aVL-~~HtqD-VK~V~WHPt~dlL~S~SYDnTIk~~~~~  180 (312)
T KOG0645|consen  139 EFECIAVL-QEHTQD-VKHVIWHPTEDLLFSCSYDNTIKVYRDE  180 (312)
T ss_pred             cEEEEeee-cccccc-ccEEEEcCCcceeEEeccCCeEEEEeec
Confidence               45555 566666 9999999999999999999999999876

>KOG0275|consensus

Probab=99.83  E-value=1.6e-21  Score=123.59  Aligned_cols=119  Identities=22%  Similarity=0.353  Sum_probs=106.5

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCCceeeE--------EEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGA--------LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      .+..++|||+++++|+.||.|.+|+..+|+....        |.-+...|.|+.|+.+..++|+|+.||.|++|.+.+|+
T Consensus       217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~  296 (508)
T KOG0275|consen  217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ  296 (508)
T ss_pred             hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch
Confidence            3445566999999999999999999998876543        33478899999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ++..+...|..+ |+++.|+.|+..+++++.|..+++--+.+|+.+..
T Consensus       297 ClRrFdrAHtkG-vt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE  343 (508)
T KOG0275|consen  297 CLRRFDRAHTKG-VTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE  343 (508)
T ss_pred             HHHHhhhhhccC-eeEEEEccCcchhhcccccceEEEeccccchhHHH
Confidence            999998788888 99999999999999999999999999999987643

>KOG0313|consensus

Probab=99.83  E-value=2.3e-19  Score=115.19  Aligned_cols=127  Identities=20%  Similarity=0.302  Sum_probs=107.2

Q ss_pred             EEeecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518          8 FVTHSHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ....||..+|.++.| +...+++++.|++|+.||+.++....++... ..++++.++|..+++++|+.|..+++||.+++
T Consensus       254 vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  254 VTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             EEecccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCCCCceeecCCCCC
Confidence            345689999999999 8888999999999999999999988888754 56799999999999999999999999999876


Q ss_pred             e--EEEEEEeCCCCcceeEEEEccCC-cEEEEEcCCCeEEEEEcCCCc-eeEEE
Q psy11518         87 Q--LEKLFKKAHKGTAVNHISIHPSG-KLALSVGKDKTLRTWNLVKGR-SAYIT  136 (139)
Q Consensus        87 ~--~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~-~~~~~  136 (139)
                      .  ........|..- |.++.|+|.. .++++++.|+++++||+|+.+ +++.+
T Consensus       333 ~gs~v~~s~~gH~nw-Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI  385 (423)
T KOG0313|consen  333 DGSVVSQSLIGHKNW-VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI  385 (423)
T ss_pred             CCceeEEeeecchhh-hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee
Confidence            4  233222566665 9999999954 578899999999999999987 66554

>KOG0310|consensus

Probab=99.83  E-value=7.5e-19  Score=115.62  Aligned_cols=128  Identities=17%  Similarity=0.205  Sum_probs=107.3

Q ss_pred             EEEeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518          7 TFVTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKR-KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      .....+|+.+|.|.++   ++.++++|+.||.|++||.... ..+.++ .|..+|..+.+-|.|..+++++.. .+++||
T Consensus       146 ~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn-~vkVWD  223 (487)
T KOG0310|consen  146 QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGN-SVKVWD  223 (487)
T ss_pred             EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCC-eEEEEE
Confidence            4456689999988887   6779999999999999999887 555555 488999999999999999998865 699999


Q ss_pred             eCCce-EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         83 VGSWQ-LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        83 ~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +-+|. .+..+ ..|... |+|+++..++..|++++-|+.+++||+.+.+.++.+.+
T Consensus       224 l~~G~qll~~~-~~H~Kt-VTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~  278 (487)
T KOG0310|consen  224 LTTGGQLLTSM-FNHNKT-VTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY  278 (487)
T ss_pred             ecCCceehhhh-hcccce-EEEEEeecCCceEeecccccceEEEEccceEEEEeeec
Confidence            98554 44444 346655 99999999999999999999999999999888887764

>KOG0293|consensus

Probab=99.83  E-value=6e-20  Score=119.21  Aligned_cols=117  Identities=23%  Similarity=0.409  Sum_probs=101.7

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC---ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKR---KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      .|...|.-+.|  +|++||+++.|.+..+|++...   +..+++.+|..+|..+.|+||.+++++|+.+..+.+||..++
T Consensus       222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg  301 (519)
T KOG0293|consen  222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG  301 (519)
T ss_pred             hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcc
Confidence            45555555555  9999999999999999998654   346788899999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      .....++.. .+..+.+.+|.|||..+++|+.|+.+..||+..
T Consensus       302 d~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg  343 (519)
T KOG0293|consen  302 DLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG  343 (519)
T ss_pred             hhhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence            999888555 344599999999999999999999999999863

>KOG0640|consensus

Probab=99.83  E-value=6.5e-20  Score=115.59  Aligned_cols=124  Identities=28%  Similarity=0.411  Sum_probs=111.8

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEE---EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGAL---MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ...++.+++|  .|+++++|..-..+++||+++.++....   ..|.+.|+++.+++.+++.++++.||.|++||--.++
T Consensus       215 d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r  294 (430)
T KOG0640|consen  215 DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR  294 (430)
T ss_pred             ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH
Confidence            3456667766  9999999999999999999998765432   4689999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ++..+...|.+..|.+..|..+++++++.+.|..+.+|.+.+++++..+
T Consensus       295 Cv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Y  343 (430)
T KOG0640|consen  295 CVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEY  343 (430)
T ss_pred             HHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEE
Confidence            9999988999988999999999999999999999999999999998765

>KOG0276|consensus

Probab=99.83  E-value=1.7e-19  Score=122.21  Aligned_cols=131  Identities=22%  Similarity=0.326  Sum_probs=112.0

Q ss_pred             eeeEEEEEeecceeeEEEEe--cCCcEEEEeCCCCeEEEEEccCC-ceeeEEEecCCCeEEEEECC-CCCEEEEecCCCc
Q psy11518          2 YTLTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKR-KQSGALMQHEGTITCLKFTP-EGSHLISCSDDGS   77 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~   77 (139)
                      ++.++.|.  .|...+.|+.  |..+++++++.|-.|++||.+.. .+.++|.+|...|.+++|+| |.+.+|+++-|++
T Consensus        87 ~ekV~~Fe--AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrT  164 (794)
T KOG0276|consen   87 GEKVKTFE--AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRT  164 (794)
T ss_pred             ceeeEEee--ccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecccc
Confidence            34455555  5666666665  58999999999999999999775 77889999999999999999 7889999999999


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCC--cEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG--KLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      |++|.+.+..+..++ ..|..+ |.++++-+.|  +++++|++|..+.|||..+.+.++++
T Consensus       165 VKVWslgs~~~nfTl-~gHekG-VN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL  223 (794)
T KOG0276|consen  165 VKVWSLGSPHPNFTL-EGHEKG-VNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL  223 (794)
T ss_pred             EEEEEcCCCCCceee-eccccC-cceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh
Confidence            999999999888888 477777 9999998744  69999999999999999988766543

>KOG0310|consensus

Probab=99.83  E-value=1.8e-19  Score=118.50  Aligned_cols=119  Identities=22%  Similarity=0.324  Sum_probs=99.4

Q ss_pred             eeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCC-CCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         15 ASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE-GSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      ..+.++.|  ||+++++|...|.|++||.++...+..+.+|+.++..+.|+|. +..+++|+.|+.+++||+.+......
T Consensus        69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~  148 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE  148 (487)
T ss_pred             cceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence            34555666  8999999999999999997776678889999999999999995 56678889899999999998886434


Q ss_pred             EEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCC-ceeEE
Q psy11518         92 FKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKG-RSAYI  135 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~-~~~~~  135 (139)
                      + ..|... |.+.+|+| ++..+++|+.||.|++||++.. ..+..
T Consensus       149 l-~~htDY-VR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e  192 (487)
T KOG0310|consen  149 L-SGHTDY-VRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE  192 (487)
T ss_pred             e-cCCcce-eEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE
Confidence            4 677777 99999999 4558999999999999999987 44443

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.83  E-value=6.1e-18  Score=107.64  Aligned_cols=123  Identities=28%  Similarity=0.485  Sum_probs=104.9

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      .|...+..+.+  +++.+++++.++.|.+|++.+++.+..+..|...+.++.|+++++++++++.++.+.+||+.+++..
T Consensus        49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  128 (289)
T cd00200          49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL  128 (289)
T ss_pred             cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE
Confidence            45556656665  6779999999999999999988888888899889999999999889999988999999999988877


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..+. .+... +.+++|+|++.++++++.|+.+++||+++++.+..+
T Consensus       129 ~~~~-~~~~~-i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~  173 (289)
T cd00200         129 TTLR-GHTDW-VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL  173 (289)
T ss_pred             EEec-cCCCc-EEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeE
Confidence            7773 44444 999999999999999888999999999987766554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.82  E-value=2e-18  Score=124.78  Aligned_cols=114  Identities=18%  Similarity=0.274  Sum_probs=98.8

Q ss_pred             eeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         15 ASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        15 ~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      ..+.++.|   ++.++++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++|+.|+.|++||++++....
T Consensus       533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~  612 (793)
T PLN00181        533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG  612 (793)
T ss_pred             CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence            34555665   578999999999999999999999999999999999999997 78999999999999999999888877


Q ss_pred             EEEeCCCCcceeEEEEc-cCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         91 LFKKAHKGTAVNHISIH-PSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      .+.  ... .+.++.|+ +++.++++|+.|+.|++||+++.+
T Consensus       613 ~~~--~~~-~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~  651 (793)
T PLN00181        613 TIK--TKA-NICCVQFPSESGRSLAFGSADHKVYYYDLRNPK  651 (793)
T ss_pred             EEe--cCC-CeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence            763  233 38899995 578999999999999999998765

>KOG0273|consensus

Probab=99.82  E-value=6.8e-19  Score=115.66  Aligned_cols=103  Identities=24%  Similarity=0.347  Sum_probs=95.7

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      .+..+++++.|++|++||+..+.+++.|..|+.+|.+++|+|+++++|+|+.||.|.+|+++.++....+  ...+. |.
T Consensus       421 ~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~--~~~~~-If  497 (524)
T KOG0273|consen  421 MNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY--QGTGG-IF  497 (524)
T ss_pred             CCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee--cCCCe-EE
Confidence            5668999999999999999999999999999999999999999999999999999999999999998887  33444 99


Q ss_pred             EEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518        103 HISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      .++|+.+|.++..+-.|+.+.+.|++
T Consensus       498 el~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  498 ELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             EEEEcCCCCEEEEEecCCCceEEEec
Confidence            99999999999999999999999986

>KOG0267|consensus

Probab=99.82  E-value=1.6e-20  Score=128.55  Aligned_cols=126  Identities=25%  Similarity=0.433  Sum_probs=113.2

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      +.+|..+|-++.|  +..+|++|..+|+|++||++..+.+.++.+|...+..+.|+|-+.+.+.|+.|+.+++||++...
T Consensus        66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G  145 (825)
T KOG0267|consen   66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG  145 (825)
T ss_pred             eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence            4578888888888  67789999999999999999999999999999999999999999999999999999999999877


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +...+ ..|... +..+.|+|+|++++.+++|..++|||+..|+....++
T Consensus       146 c~~~~-~s~~~v-v~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~  193 (825)
T KOG0267|consen  146 CSHTY-KSHTRV-VDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK  193 (825)
T ss_pred             ceeee-cCCcce-eEEEeecCCCceeeccCCcceeeeecccccccccccc
Confidence            88887 446655 8999999999999999999999999999888775543

>KOG0282|consensus

Probab=99.82  E-value=2.4e-20  Score=122.49  Aligned_cols=126  Identities=21%  Similarity=0.315  Sum_probs=109.0

Q ss_pred             eEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCC-CEEEEecCCCcEEE
Q psy11518          4 LTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEG-SHLISCSDDGSIAI   80 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~   80 (139)
                      .+++|.  +|..+|.+++|  +|..+++++.|+.|++||+++|+++..+.. ...++|+.|+|++ +.+++|+.|+.|+.
T Consensus       250 ~lrtf~--gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~  326 (503)
T KOG0282|consen  250 CLRTFK--GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQ  326 (503)
T ss_pred             eehhhh--cchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEE
Confidence            344444  78888998888  899999999999999999999999998874 3467899999987 78899999999999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ||+++++....+ ..|-+. |..+.|-++++.+++.++|+.++||+.+.+-++.
T Consensus       327 wDiRs~kvvqeY-d~hLg~-i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik  378 (503)
T KOG0282|consen  327 WDIRSGKVVQEY-DRHLGA-ILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK  378 (503)
T ss_pred             EeccchHHHHHH-Hhhhhh-eeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence            999999988777 444454 9999999999999999999999999998765543

>KOG0308|consensus

Probab=99.82  E-value=4e-19  Score=120.60  Aligned_cols=124  Identities=21%  Similarity=0.344  Sum_probs=109.1

Q ss_pred             cceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCc--eeeE--------EE-ecCCCeEEEEECCCCCEEEEecCCCc
Q psy11518         12 SHTASVRSVAA---TSKLAASSGADETVVLYDMVKRK--QSGA--------LM-QHEGTITCLKFTPEGSHLISCSDDGS   77 (139)
Q Consensus        12 ~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~--~~~~--------~~-~~~~~v~~~~~~~~~~~l~~~~~d~~   77 (139)
                      .|..+|.|+++   +...+|+|+-|+.|.+||++++.  .+..        +. ++...|.+++.++.+..+++|+..+.
T Consensus       115 ~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~  194 (735)
T KOG0308|consen  115 THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD  194 (735)
T ss_pred             cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc
Confidence            47888999887   88899999999999999999772  2222        22 78889999999999999999999999


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      |++||.++.+.+-.+ .+|... |..+-.++||..+++++.||.|++||+...+.+..+.
T Consensus       195 lr~wDprt~~kimkL-rGHTdN-Vr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~  252 (735)
T KOG0308|consen  195 LRLWDPRTCKKIMKL-RGHTDN-VRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYI  252 (735)
T ss_pred             eEEeccccccceeee-eccccc-eEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEE
Confidence            999999999888888 588877 9999999999999999999999999999998887754

>KOG0277|consensus

Probab=99.82  E-value=1.2e-18  Score=107.02  Aligned_cols=116  Identities=18%  Similarity=0.304  Sum_probs=97.8

Q ss_pred             eeEEEEec---CCcEEEEeCCCCeEEEEEccC-CceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         15 ASVRSVAA---TSKLAASSGADETVVLYDMVK-RKQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        15 ~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ..+..++|   ..+.+++++.||++++||... ..++..++.|..+|.++.|++ +++.+++++.|++|++|+...+..+
T Consensus        61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv  140 (311)
T KOG0277|consen   61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSV  140 (311)
T ss_pred             cceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcce
Confidence            44556666   567899999999999999643 467889999999999999998 5667788899999999999888888


Q ss_pred             EEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         90 KLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      .++ ..|... |....|+| ....+++++.|+.+++||++....
T Consensus       141 ~Tf-~gh~~~-Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk  182 (311)
T KOG0277|consen  141 QTF-NGHNSC-IYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK  182 (311)
T ss_pred             Eee-cCCccE-EEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence            887 666666 99999999 567899999999999999986543

>KOG0973|consensus

Probab=99.82  E-value=1.1e-18  Score=123.42  Aligned_cols=125  Identities=26%  Similarity=0.399  Sum_probs=109.0

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccC------------------CceeeEEEecCCCeEEEEECCCCCEE
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVK------------------RKQSGALMQHEGTITCLKFTPEGSHL   69 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l   69 (139)
                      ...|.+.+.|+.|  ||++||+|+.|+.|.+|+...                  .+....+.+|...|..+.|+|++.++
T Consensus        65 m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l  144 (942)
T KOG0973|consen   65 MDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL  144 (942)
T ss_pred             eccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence            3468889999987  999999999999999999762                  13566788999999999999999999


Q ss_pred             EEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         70 ISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        70 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ++++-|+.|.+|+..+.+.+..+ ..|.+. |-.+.|.|-|+++++-++|+.|.||++.+-.....+
T Consensus       145 vS~s~DnsViiwn~~tF~~~~vl-~~H~s~-VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~I  209 (942)
T KOG0973|consen  145 VSVSLDNSVIIWNAKTFELLKVL-RGHQSL-VKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSI  209 (942)
T ss_pred             EEecccceEEEEccccceeeeee-eccccc-ccceEECCccCeeeeecCCceEEEEEcccceeeEee
Confidence            99999999999999999888887 666666 999999999999999999999999998775554443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.81  E-value=5.6e-18  Score=122.43  Aligned_cols=122  Identities=16%  Similarity=0.264  Sum_probs=99.6

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC----c----eeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKR----K----QSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAI   80 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~----~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~   80 (139)
                      .|...|.++.|  +++++++|+.|+.|++|+....    .    +...+. +...+.+++|++ .+.++++++.||.|++
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~l  559 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQV  559 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence            36777888887  8999999999999999997532    1    222333 346789999987 5789999999999999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ||+.+++....+ ..|... |.+++|+| ++.+|++|+.|+.|++||+++++.+..+
T Consensus       560 Wd~~~~~~~~~~-~~H~~~-V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~  614 (793)
T PLN00181        560 WDVARSQLVTEM-KEHEKR-VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTI  614 (793)
T ss_pred             EECCCCeEEEEe-cCCCCC-EEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence            999988887777 456555 99999997 7889999999999999999988776554

>KOG0292|consensus

Probab=99.81  E-value=3.2e-19  Score=124.92  Aligned_cols=122  Identities=18%  Similarity=0.273  Sum_probs=111.8

Q ss_pred             eeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         14 TASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      ...+..++|  ..+.++++-..|.|.+||.+.+..+..|.+|+++|..+.|+|+..++++|+.|..|++|+..+.+++..
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft   88 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT   88 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence            344555554  889999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      + .+|-.. |..+.||+.-.+++++++|.+|+|||..+++.+..+.
T Consensus        89 L-~GHlDY-VRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt  132 (1202)
T KOG0292|consen   89 L-LGHLDY-VRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT  132 (1202)
T ss_pred             h-ccccce-eEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe
Confidence            8 788877 9999999999999999999999999999999887653

>KOG0302|consensus

Probab=99.81  E-value=3.9e-19  Score=114.20  Aligned_cols=129  Identities=26%  Similarity=0.314  Sum_probs=102.3

Q ss_pred             eeeEEEEEeecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCce---eeEEEecCCCeEEEEECC-CCCEEEEecCCC
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQ---SGALMQHEGTITCLKFTP-EGSHLISCSDDG   76 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~---~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~   76 (139)
                      +..+.++..++..++..++++ ....+++|..-+.|++|.+.++.=   ...+.+|...|-.++||| ....|++|+.||
T Consensus       201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg  280 (440)
T KOG0302|consen  201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG  280 (440)
T ss_pred             cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence            345566666666677777777 555788898889999999988632   234567999999999999 466889999999


Q ss_pred             cEEEEEeCCceEEE-EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         77 SIAIFRVGSWQLEK-LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        77 ~i~~~d~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      .|++||++.+.... .+...|... |.-++|+.+..+|++|++||.++|||+|+-+
T Consensus       281 sIrIWDiRs~~~~~~~~~kAh~sD-VNVISWnr~~~lLasG~DdGt~~iwDLR~~~  335 (440)
T KOG0302|consen  281 SIRIWDIRSGPKKAAVSTKAHNSD-VNVISWNRREPLLASGGDDGTLSIWDLRQFK  335 (440)
T ss_pred             eEEEEEecCCCccceeEeeccCCc-eeeEEccCCcceeeecCCCceEEEEEhhhcc
Confidence            99999999984433 333455555 9999999988899999999999999998643

>KOG1407|consensus

Probab=99.81  E-value=2.5e-18  Score=105.94  Aligned_cols=122  Identities=16%  Similarity=0.254  Sum_probs=107.1

Q ss_pred             eeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE
Q psy11518         15 ASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      ..+..+.|  ++.+++.....|.|.|.....-+++..++.|.....|+.|+|+|+++|+|+.|..+.+||++...+.+.+
T Consensus       148 ~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~i  227 (313)
T KOG1407|consen  148 FEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCI  227 (313)
T ss_pred             ceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheee
Confidence            34555665  6777777777899999999999999999999999999999999999999999999999999988887777


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                        .....+|..++|+.+|++|+++++|..|-|=+.++|..+..+..
T Consensus       228 --sRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~  271 (313)
T KOG1407|consen  228 --SRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPC  271 (313)
T ss_pred             --ccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeec
Confidence              33445599999999999999999999999999999999887764

>KOG0264|consensus

Probab=99.80  E-value=1.4e-18  Score=113.27  Aligned_cols=119  Identities=25%  Similarity=0.401  Sum_probs=97.1

Q ss_pred             eecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-ceeeEEEecCCCeEEEEECCC-CCEEEEecCCCcEEEEEeC
Q psy11518         10 THSHTASVRSVAA---TSKLAASSGADETVVLYDMVKR-KQSGALMQHEGTITCLKFTPE-GSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        10 ~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~   84 (139)
                      ..+|...+.|++|   ++..||+|+.|++|.+||+++. +++..+.+|...|.++.|+|. ...||+++.|+.+.+||+.
T Consensus       268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            3468888999887   8889999999999999999875 678899999999999999995 5678999999999999985


Q ss_pred             Cce------------EEEEEEeCCCCcceeEEEEccCCcE-EEEEcCCCeEEEEEcC
Q psy11518         85 SWQ------------LEKLFKKAHKGTAVNHISIHPSGKL-ALSVGKDKTLRTWNLV  128 (139)
Q Consensus        85 ~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~  128 (139)
                      .-.            +...|..+.+...|..+.|+|+..+ ++++++|+.+.||.+.
T Consensus       348 ~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  348 RIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            421            1122333444445999999998885 5677899999999986

>KOG2110|consensus

Probab=99.80  E-value=1e-17  Score=107.36  Aligned_cols=129  Identities=21%  Similarity=0.372  Sum_probs=108.6

Q ss_pred             eeEEEEEee-cceeeEEEEec--CCcEEEEe--CCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCc
Q psy11518          3 TLTQTFVTH-SHTASVRSVAA--TSKLAASS--GADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGS   77 (139)
Q Consensus         3 ~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~--~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   77 (139)
                      ++.+++... .+...+.++++  .+.+++--  ...|.|.+||..+-++...+..|++.+.+++|+++|.+|||++..|+
T Consensus       117 klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGT  196 (391)
T KOG2110|consen  117 KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGT  196 (391)
T ss_pred             eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCce
Confidence            445555554 45556778887  44466633  25689999999999999999999999999999999999999999998


Q ss_pred             -EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         78 -IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        78 -i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                       |+++.+.+++.+..+..+.....|.+++|+|++++|.+.+..++|++|.+++..
T Consensus       197 VIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  197 VIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence             689999999999999777666669999999999999999999999999987543

>KOG0640|consensus

Probab=99.80  E-value=5.7e-19  Score=111.40  Aligned_cols=123  Identities=27%  Similarity=0.400  Sum_probs=102.5

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccC------------------CceeeEEEecCCCeEEEEECCCCCEEEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVK------------------RKQSGALMQHEGTITCLKFTPEGSHLIS   71 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~   71 (139)
                      .|..++.+-.|  ||.++++|+.|.+|+|.|++.                  ...+.++..|...|+++.|+|....|++
T Consensus       110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS  189 (430)
T KOG0640|consen  110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS  189 (430)
T ss_pred             ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence            56666666665  999999999999999999861                  1235677789999999999999999999


Q ss_pred             ecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         72 CSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        72 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ++.|+.|++||.........++.-....+|.++.|+|.|.++++|.+...+++||+.+.+...
T Consensus       190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfv  252 (430)
T KOG0640|consen  190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFV  252 (430)
T ss_pred             ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEee
Confidence            999999999999876655544444444559999999999999999999999999999876543

>KOG0643|consensus

Probab=99.80  E-value=6.6e-18  Score=104.49  Aligned_cols=127  Identities=21%  Similarity=0.245  Sum_probs=106.8

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEE-------------------------------------
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGAL-------------------------------------   50 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~-------------------------------------   50 (139)
                      ..||.+.|.|+..  +.+.+++|+.|.++++||+++|+.+..+                                     
T Consensus        48 y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi  127 (327)
T KOG0643|consen   48 YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI  127 (327)
T ss_pred             ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence            3478888887775  8899999999999999999988766533                                     


Q ss_pred             ----------------EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEE
Q psy11518         51 ----------------MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLAL  114 (139)
Q Consensus        51 ----------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  114 (139)
                                      ..+.+.++...|.|-+.++++|..||.|..||++++.........|... |+.++++++..+++
T Consensus       128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~-Ind~q~s~d~T~Fi  206 (327)
T KOG0643|consen  128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK-INDLQFSRDRTYFI  206 (327)
T ss_pred             cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc-cccccccCCcceEE
Confidence                            1234568888999999999999999999999999987665554555554 99999999999999


Q ss_pred             EEcCCCeEEEEEcCCCceeEEEe
Q psy11518        115 SVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       115 ~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +++.|.+-.+||+++-+.+..+.
T Consensus       207 T~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  207 TGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             ecccCccceeeeccceeeEEEee
Confidence            99999999999999988777654

>KOG1446|consensus

Probab=99.80  E-value=3.3e-17  Score=103.04  Aligned_cols=131  Identities=24%  Similarity=0.362  Sum_probs=93.4

Q ss_pred             EEEEEeecceeeEEEEe--cCCcEEEEeCCCCeEEEEEccCCceeeEEEe------------------------------
Q psy11518          5 TQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ------------------------------   52 (139)
Q Consensus         5 ~~~~~~~~~~~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~------------------------------   52 (139)
                      ++.|.  ||...|+.++  |-++.+++++.|.+|++||++..++...+..                              
T Consensus        93 lRYF~--GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~R  170 (311)
T KOG1446|consen   93 LRYFP--GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLR  170 (311)
T ss_pred             EEEcC--CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEec
Confidence            44455  6666666555  6678999999999999999986544332211                              


Q ss_pred             ---------------cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcc-eeEEEEccCCcEEEEE
Q psy11518         53 ---------------HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA-VNHISIHPSGKLALSV  116 (139)
Q Consensus        53 ---------------~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~  116 (139)
                                     .....+.+.|+|+|++++.+...+.+.+.|.-.|..+..+........ ....+|.||++++++|
T Consensus       171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g  250 (311)
T KOG1446|consen  171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG  250 (311)
T ss_pred             ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence                           123456677777777777777777777777777776666633322221 3567899999999999


Q ss_pred             cCCCeEEEEEcCCCceeEEEe
Q psy11518        117 GKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       117 ~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +.||+|++|++++++.+..+.
T Consensus       251 s~dg~i~vw~~~tg~~v~~~~  271 (311)
T KOG1446|consen  251 SDDGTIHVWNLETGKKVAVLR  271 (311)
T ss_pred             cCCCcEEEEEcCCCcEeeEec
Confidence            999999999999999887653

>KOG0274|consensus

Probab=99.80  E-value=7.7e-18  Score=115.99  Aligned_cols=122  Identities=22%  Similarity=0.349  Sum_probs=108.7

Q ss_pred             eecceeeEEEEecC--CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAAT--SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~~--~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ..+|.+.|.++.+.  +.++++|+.|.++++||..++++...+.+|.+.+.++..  ....+++|+.|.+|++|++.++.
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~  322 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGA  322 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcc
Confidence            56899999999985  999999999999999999999999999999999998876  44578889999999999999999


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .+..+ .+|... |.++..+  +.++++|+.|+.|.+||+.+++.+..++
T Consensus       323 ~l~l~-~~h~~~-V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~  368 (537)
T KOG0274|consen  323 CLNLL-RGHTGP-VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS  368 (537)
T ss_pred             eEEEe-cccccc-EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec
Confidence            99888 445555 9999987  8899999999999999999998887653

>KOG0289|consensus

Probab=99.80  E-value=6.8e-18  Score=110.21  Aligned_cols=112  Identities=21%  Similarity=0.319  Sum_probs=99.3

Q ss_pred             EEEEe--cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe
Q psy11518         17 VRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        17 v~~~~--~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      +.+..  +||.++.+|..|+.|++||+.+......|.+|.++|..++|+.+|-+|++++.|+.|++||++..+....+..
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l  429 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQL  429 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeec
Confidence            44444  4999999999999999999999999999999999999999999999999999999999999999888888865


Q ss_pred             CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         95 AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ..... +.+++|.+.|.+++.++.|=+|++++-.+
T Consensus       430 ~~~~~-v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~  463 (506)
T KOG0289|consen  430 DEKKE-VNSLSFDQSGTYLGIAGSDLQVYICKKKT  463 (506)
T ss_pred             ccccc-ceeEEEcCCCCeEEeecceeEEEEEeccc
Confidence            55554 99999999999999999888888777443

>KOG1034|consensus

Probab=99.79  E-value=2.3e-18  Score=109.01  Aligned_cols=126  Identities=23%  Similarity=0.364  Sum_probs=106.6

Q ss_pred             eEEEEEeecceeeEEEEec------CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCC-CCEEEEecCCC
Q psy11518          4 LTQTFVTHSHTASVRSVAA------TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE-GSHLISCSDDG   76 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~------~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~   76 (139)
                      .++.+....+......++|      ...++++|+.-|.|+|.|+.+++....+.+|...|+.+.+.|+ .+++++++.|.
T Consensus        79 ~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~  158 (385)
T KOG1034|consen   79 LLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH  158 (385)
T ss_pred             eeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCc
Confidence            3445554445566666665      2668999999999999999999999999999999999999995 57889999999


Q ss_pred             cEEEEEeCCceEEEEEEe--CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         77 SIAIFRVGSWQLEKLFKK--AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      .|++|++++..++..+.-  .|... |.++.|++++.+++++|.|..|.+|++...
T Consensus       159 svRlwnI~~~~Cv~VfGG~egHrde-VLSvD~~~~gd~i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  159 SVRLWNIQTDVCVAVFGGVEGHRDE-VLSVDFSLDGDRIASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             eEEEEeccCCeEEEEecccccccCc-EEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence            999999999999888742  34555 999999999999999999999999999844

>KOG1273|consensus

Probab=99.79  E-value=3.9e-18  Score=107.75  Aligned_cols=122  Identities=19%  Similarity=0.189  Sum_probs=99.0

Q ss_pred             EEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe
Q psy11518         17 VRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        17 v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      ..|+.|  .|.+||+|+.||.|.|||+.+......+.+|..+|++++||++|+.|++++.|..+.+||+..+.+...+..
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            445555  899999999999999999999998888999999999999999999999999999999999988765543321


Q ss_pred             CC----------CC----------------------------------cceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         95 AH----------KG----------------------------------TAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        95 ~~----------~~----------------------------------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ..          ..                                  ....+..|++.|+++++|...|.+.++|..+.
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence            10          00                                  00122347788999999999999999999998


Q ss_pred             ceeEEEec
Q psy11518        131 RSAYITNL  138 (139)
Q Consensus       131 ~~~~~~~~  138 (139)
                      +.+..+.+
T Consensus       186 e~vas~ri  193 (405)
T KOG1273|consen  186 ECVASFRI  193 (405)
T ss_pred             eeeeeeee
Confidence            88776653

>KOG0305|consensus

Probab=99.79  E-value=2.2e-18  Score=115.87  Aligned_cols=122  Identities=24%  Similarity=0.342  Sum_probs=108.3

Q ss_pred             ceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeE-EEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         13 HTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGA-LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        13 ~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      |...|.+++|++..+.+|+.++.|..+|+...+.... +.+|...|..+.|+++++++|+|+.|+.+.+||.....+...
T Consensus       259 h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~  338 (484)
T KOG0305|consen  259 HASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFT  338 (484)
T ss_pred             cCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEE
Confidence            8899999999999999999999999999988766655 889999999999999999999999999999999977777777


Q ss_pred             EEeCCCCcceeEEEEcc-CCcEEEEEc--CCCeEEEEEcCCCceeEEE
Q psy11518         92 FKKAHKGTAVNHISIHP-SGKLALSVG--KDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~-~~~~l~~~~--~d~~i~i~d~~~~~~~~~~  136 (139)
                      + ..|... |-.++|+| ....|++|+  .|+.|++||..+++.+..+
T Consensus       339 ~-~~H~aA-VKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v  384 (484)
T KOG0305|consen  339 F-TEHTAA-VKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV  384 (484)
T ss_pred             E-ecccee-eeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence            6 667766 99999999 556888876  5999999999999887654

>KOG0306|consensus

Probab=99.78  E-value=5.1e-18  Score=117.02  Aligned_cols=121  Identities=20%  Similarity=0.428  Sum_probs=108.6

Q ss_pred             EEeecceeeEEEE--ecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518          8 FVTHSHTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus         8 ~~~~~~~~~v~~~--~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +..-||.-||.|+  +||+++++||+.|..|++|-++=|.+...+.+|+..|.++.|.|+...+.++++|+.++.||...
T Consensus       544 lsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k  623 (888)
T KOG0306|consen  544 LSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK  623 (888)
T ss_pred             eeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence            4455777776665  56999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      .+.+..+ ..|... |++++..|+|.++++++.|..|++|.....
T Consensus       624 Fe~iq~L-~~H~~e-v~cLav~~~G~~vvs~shD~sIRlwE~tde  666 (888)
T KOG0306|consen  624 FEEIQKL-DGHHSE-VWCLAVSPNGSFVVSSSHDKSIRLWERTDE  666 (888)
T ss_pred             hhhheee-ccchhe-eeeeEEcCCCCeEEeccCCceeEeeeccCc
Confidence            9988888 566665 999999999999999999999999987553

>KOG0274|consensus

Probab=99.78  E-value=1.2e-17  Score=114.99  Aligned_cols=122  Identities=25%  Similarity=0.392  Sum_probs=108.8

Q ss_pred             EeecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518          9 VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus         9 ~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ...+|...+.++......+++|+.|.+|++|++.+++.+..+.+|...|.++..+  +.++++|+.|+.|++||..++++
T Consensus       286 ~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c  363 (537)
T KOG0274|consen  286 SLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC  363 (537)
T ss_pred             EecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee
Confidence            3447888999998888899999999999999999999999999999999999996  78999999999999999999999


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC-ceeEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG-RSAYI  135 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~  135 (139)
                      +..+ ..|... |.++.+.+. ..+++|+.|+.|++||+++. +.+..
T Consensus       364 l~sl-~gH~~~-V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~t  408 (537)
T KOG0274|consen  364 LKSL-SGHTGR-VYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHT  408 (537)
T ss_pred             eeee-cCCcce-EEEEEecCc-ceEEeeeeccceEeecCCchhhhhhh
Confidence            9998 566666 999988755 89999999999999999998 55443

>KOG1274|consensus

Probab=99.78  E-value=9.9e-18  Score=117.40  Aligned_cols=124  Identities=21%  Similarity=0.339  Sum_probs=105.9

Q ss_pred             EEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEe--------cCCCeEEEEECCCCCEEEEecCC
Q psy11518          6 QTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQ--------HEGTITCLKFTPEGSHLISCSDD   75 (139)
Q Consensus         6 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~d   75 (139)
                      +.....+|.++|.++.+  ++++||+.+.||.|++|++.++....++.+        ....+..++|+|++..++..+.|
T Consensus       130 ~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d  209 (933)
T KOG1274|consen  130 QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD  209 (933)
T ss_pred             hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC
Confidence            34455689999999987  899999999999999999998877665543        13446778999998888888889


Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      +.|++|+..++.....+...+....+..++|+|+|++|++++.+|.|.|||.++
T Consensus       210 ~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  210 NTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            999999999999999886666665589999999999999999999999999984

>KOG0306|consensus

Probab=99.78  E-value=5.6e-18  Score=116.82  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=106.7

Q ss_pred             eeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         14 TASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      ...++|+..  +..++|+|..||.|++|+..+.....++.+|...|+++.|+..|..|++|+.|+.|.+||+-...-...
T Consensus        65 k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r  144 (888)
T KOG0306|consen   65 KAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR  144 (888)
T ss_pred             cceEEEeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE
Confidence            356777775  666789999999999999999999999999999999999999999999999999999999987766777


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      + .+|+.. |+..-|..+.+++++.+-|+.|++||+.+......+
T Consensus       145 L-~GHkd~-iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Th  187 (888)
T KOG0306|consen  145 L-RGHKDS-ITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETH  187 (888)
T ss_pred             e-ecchHH-HhHHhccCCCeEEEEeccCceEEEEecccceeeeEE
Confidence            7 567766 888889888899999999999999999998776554

>KOG1445|consensus

Probab=99.78  E-value=1.1e-18  Score=118.95  Aligned_cols=117  Identities=22%  Similarity=0.304  Sum_probs=102.7

Q ss_pred             eeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-------ceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEE
Q psy11518         14 TASVRSVAA---TSKLAASSGADETVVLYDMVKR-------KQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        14 ~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d   82 (139)
                      ...|+++.|   |.+.|++++.||.|++|.+..+       .+...+..|...|+.+.|+| ....|++++.|-+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            345777776   8899999999999999998654       45567889999999999999 567899999999999999


Q ss_pred             eCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         83 VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +++......+ ..|.+. |.+++|+|+|+.+++.+-||+|++|+.+++..
T Consensus       707 l~~~~~~~~l-~gHtdq-If~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  707 LANAKLYSRL-VGHTDQ-IFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             hhhhhhhhee-ccCcCc-eeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            9999888887 677777 99999999999999999999999999987643

>KOG0646|consensus

Probab=99.78  E-value=1.8e-17  Score=108.80  Aligned_cols=123  Identities=23%  Similarity=0.442  Sum_probs=102.5

Q ss_pred             eeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC-------
Q psy11518         14 TASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG-------   84 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-------   84 (139)
                      ++++.|+.-  +|.+++.|+..+.+.+|.+.+|..+..+..|-..|+|+.|+.|+.++++|+.||.|.+|++.       
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            455666664  88888888899999999999999999999999999999999999999999999999999872       


Q ss_pred             --CceEEEEEEeCCCCcceeEEEEccCC--cEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         85 --SWQLEKLFKKAHKGTAVNHISIHPSG--KLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        85 --~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                        +..+...+ ..|. -+|+++...+.|  ..+++++.|+++++||+..+..+..+.+
T Consensus       161 ~~~~~p~~~f-~~Ht-lsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f  216 (476)
T KOG0646|consen  161 DHSVKPLHIF-SDHT-LSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF  216 (476)
T ss_pred             CCCccceeee-ccCc-ceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec
Confidence              22334444 3444 449998887653  5899999999999999999988887654

>KOG0278|consensus

Probab=99.78  E-value=1.9e-17  Score=101.85  Aligned_cols=122  Identities=24%  Similarity=0.356  Sum_probs=93.1

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEe-----------------------------------
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQ-----------------------------------   52 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~-----------------------------------   52 (139)
                      ..+|...|..+.|  ..+.+++...|+.|++||..++..+..+.-                                   
T Consensus       139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~l  218 (334)
T KOG0278|consen  139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLL  218 (334)
T ss_pred             hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccce
Confidence            3467788888877  677788889999999999998877665531                                   


Q ss_pred             ----cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         53 ----HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        53 ----~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                          -...|.+.+++|+...+++|+.|..+..||..++..+..+...|.++ |.++.|+|+|...++|++||+|++|.+.
T Consensus       219 Ks~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp-VhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  219 KSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP-VHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             eeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc-eEEEEECCCCceeeccCCCceEEEEEec
Confidence                01134555666766677777777777777777777777764555555 9999999999999999999999999887


Q ss_pred             CCce
Q psy11518        129 KGRS  132 (139)
Q Consensus       129 ~~~~  132 (139)
                      -++.
T Consensus       298 ~~~~  301 (334)
T KOG0278|consen  298 PGKT  301 (334)
T ss_pred             CCCc
Confidence            6654

>KOG0639|consensus

Probab=99.77  E-value=8.5e-19  Score=116.55  Aligned_cols=115  Identities=23%  Similarity=0.435  Sum_probs=100.0

Q ss_pred             cCCcEEEEeCCCCeEEEEEccCCcee--eEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCc
Q psy11518         22 ATSKLAASSGADETVVLYDMVKRKQS--GALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT   99 (139)
Q Consensus        22 ~~~~~l~~~~~~~~v~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~   99 (139)
                      +||+.|++|++..++.|||+....+.  .++....-...+++.+||.+..+++..||.|.+||+++......+ ..|..+
T Consensus       475 pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqf-qGhtDG  553 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQF-QGHTDG  553 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecc-cCCCCC
Confidence            49999999999999999999765443  344443445678889999999999999999999999999999988 778877


Q ss_pred             ceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        100 AVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                       +.||..+++|..|.+|+-|++|+.||+++++.++...|
T Consensus       554 -ascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF  591 (705)
T KOG0639|consen  554 -ASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF  591 (705)
T ss_pred             -ceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh
Confidence             99999999999999999999999999999998877654

>KOG0772|consensus

Probab=99.77  E-value=6.2e-18  Score=112.56  Aligned_cols=130  Identities=19%  Similarity=0.232  Sum_probs=100.0

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC--cee-eEEEecCC--CeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKR--KQS-GALMQHEG--TITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~--~~~-~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      ..+...++..+.|  +++.+|+|..||+|.+|+....  .+. ..-+.|..  .|+|++|+++|++|++-+.|+.+++||
T Consensus       313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD  392 (641)
T KOG0772|consen  313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD  392 (641)
T ss_pred             CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence            3345667777777  9999999999999999997433  222 23346766  899999999999999999999999999


Q ss_pred             eCCceE-EEEEEeCCCCcceeEEEEccCCcEEEEEcC------CCeEEEEEcCCCceeEEEecC
Q psy11518         83 VGSWQL-EKLFKKAHKGTAVNHISIHPSGKLALSVGK------DKTLRTWNLVKGRSAYITNLS  139 (139)
Q Consensus        83 ~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~~  139 (139)
                      +++... +..........+-+.++|+|+.++|++|..      .|.+.+||..+...++.+.++
T Consensus       393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~  456 (641)
T KOG0772|consen  393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS  456 (641)
T ss_pred             ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence            988653 222211222233578999999999999863      578999999999988887653

>KOG1446|consensus

Probab=99.76  E-value=2e-16  Score=99.57  Aligned_cols=132  Identities=24%  Similarity=0.365  Sum_probs=111.5

Q ss_pred             eeeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC--CCc
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD--DGS   77 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~   77 (139)
                      |+..+.|..  ....+.++.|  +|..++++++|.++++||..+++.+.++..++-.+..+.|....+.+..++.  |..
T Consensus         4 ~~~ak~f~~--~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~t   81 (311)
T KOG1446|consen    4 FRPAKVFRE--TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDT   81 (311)
T ss_pred             ccccccccc--CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCc
Confidence            455566654  4566777777  8999999999999999999999999999988888899999876666665555  888


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      |+..++.+.+.++-+ .+|... |.+++.+|-+..+++++.|++|++||++..+....+.
T Consensus        82 IryLsl~dNkylRYF-~GH~~~-V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~  139 (311)
T KOG1446|consen   82 IRYLSLHDNKYLRYF-PGHKKR-VNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN  139 (311)
T ss_pred             eEEEEeecCceEEEc-CCCCce-EEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe
Confidence            999999999999998 666665 9999999999999999999999999999877766554

>KOG0300|consensus

Probab=99.76  E-value=1.4e-17  Score=105.70  Aligned_cols=121  Identities=18%  Similarity=0.261  Sum_probs=105.5

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      .+.+|...|.+..|  .++.+++++.|.+-.+||++++.++..+.+|....+.++-+|..+++++.+.|-+.++||++..
T Consensus       267 ~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea  346 (481)
T KOG0300|consen  267 RLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA  346 (481)
T ss_pred             eeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh
Confidence            45578999999998  8999999999999999999999999999999999999999999999999999999999999865


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      -..-....+|... |++..|..+ ..+++|++|++|.+||+++-+
T Consensus       347 I~sV~VFQGHtdt-VTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  347 IQSVAVFQGHTDT-VTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             cceeeeecccccc-eeEEEEecC-CceeecCCCceEEEeeecccc
Confidence            4433333666666 999999865 458899999999999998754

>KOG2111|consensus

Probab=99.76  E-value=1.3e-16  Score=100.75  Aligned_cols=128  Identities=19%  Similarity=0.304  Sum_probs=105.7

Q ss_pred             eEEEEEeecceeeEEEEec--CCcEEE-EeCCCCeEEEEEccCCce--eeEEEecCCCeEEEEECCCCCEEEEecCCCc-
Q psy11518          4 LTQTFVTHSHTASVRSVAA--TSKLAA-SSGADETVVLYDMVKRKQ--SGALMQHEGTITCLKFTPEGSHLISCSDDGS-   77 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~--~~~~l~-~~~~~~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-   77 (139)
                      +.+.+.+...+....++.+  +..+|+ -|-.-|+|.|-|+...+.  ......|.+.|.|++.+.+|..+||++..|+ 
T Consensus       126 ~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTL  205 (346)
T KOG2111|consen  126 LLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTL  205 (346)
T ss_pred             heeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEE
Confidence            4455555555556777777  444444 344679999999876554  5778899999999999999999999999998 


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      |++||..++.++..+..+.....|.+++|+|+..+|+++++.|+++||.++...
T Consensus       206 IRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  206 IRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence            689999999999999777666669999999999999999999999999998643

>KOG1407|consensus

Probab=99.76  E-value=2.6e-17  Score=101.58  Aligned_cols=116  Identities=21%  Similarity=0.259  Sum_probs=100.4

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      .+.|+..+.|+.|  +|+++|+|+.|..+.+||++..-+...+..+.-+|..++|+.+|++||+++.|..|-+=++++|.
T Consensus       185 i~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd  264 (313)
T KOG1407|consen  185 IKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD  264 (313)
T ss_pred             cccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC
Confidence            3467788888887  99999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCC---------CeEEEEEcC
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKD---------KTLRTWNLV  128 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~  128 (139)
                      .+..++  +.+. ...++|+|...+|+-+.+|         |.+++|-+.
T Consensus       265 ~~~eI~--~~~~-t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~~  311 (313)
T KOG1407|consen  265 RVWEIP--CEGP-TFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGLS  311 (313)
T ss_pred             eEEEee--ccCC-ceeEEecCCCceeeEEecCCCCccccccceeEEecCC
Confidence            998883  3333 8899999999999877653         566666554

>KOG0270|consensus

Probab=99.75  E-value=1.3e-17  Score=108.88  Aligned_cols=127  Identities=23%  Similarity=0.320  Sum_probs=103.1

Q ss_pred             EEeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEe
Q psy11518          8 FVTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~   83 (139)
                      +...+|...|.+++|   ..+.|++|+.|.+|.+||+.++++..++..|...|.++.|+| .+..|++|+.|+++.+.|+
T Consensus       237 ~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~  316 (463)
T KOG0270|consen  237 NSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC  316 (463)
T ss_pred             cccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence            345578888888888   566899999999999999999999999999999999999999 6788999999999999999


Q ss_pred             CCceE-EEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCC-ceeEEEe
Q psy11518         84 GSWQL-EKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKG-RSAYITN  137 (139)
Q Consensus        84 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~  137 (139)
                      +.... ...+  ...+. |..++|+|... .++++..||.|+-+|+|+. +++.++.
T Consensus       317 R~~~~s~~~w--k~~g~-VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~  370 (463)
T KOG0270|consen  317 RDPSNSGKEW--KFDGE-VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLK  370 (463)
T ss_pred             cCccccCceE--Eeccc-eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEE
Confidence            85222 2222  11233 88999999665 6777889999999999987 6666543

>KOG0313|consensus

Probab=99.75  E-value=5.7e-17  Score=104.33  Aligned_cols=117  Identities=22%  Similarity=0.328  Sum_probs=100.7

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccC-------------------------CceeeEEEecCCCeEEEEEC
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVK-------------------------RKQSGALMQHEGTITCLKFT   63 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~-------------------------~~~~~~~~~~~~~v~~~~~~   63 (139)
                      .||...|-+++.  ++..+++|+.|..|.+|+.++                         ..++.++.+|..+|.++.|+
T Consensus       190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~  269 (423)
T KOG0313|consen  190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS  269 (423)
T ss_pred             cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence            388888888885  899999999999999999321                         23556788999999999999


Q ss_pred             CCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         64 PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        64 ~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      + ...+.+++.|.+|+.||+.++.....+...   .++.+++.+|..++|++|+.|+.+++||.|++.
T Consensus       270 d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~---ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~  333 (423)
T KOG0313|consen  270 D-ATVIYSVSWDHTIKVWDLETGGLKSTLTTN---KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD  333 (423)
T ss_pred             C-CCceEeecccceEEEEEeecccceeeeecC---cceeEeecccccceeeecCCCCceeecCCCCCC
Confidence            8 678899999999999999999988877322   238999999999999999999999999999863

>KOG4283|consensus

Probab=99.75  E-value=4.4e-17  Score=102.31  Aligned_cols=110  Identities=25%  Similarity=0.434  Sum_probs=92.1

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCE-EEEecCCCcEEEEEeCCc-eEEEE---------
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH-LISCSDDGSIAIFRVGSW-QLEKL---------   91 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~-~~~~~---------   91 (139)
                      .-.++++|..+-.|++-|+.+|..-+++.+|...|.++.|+|...+ |++|+.||.|++||++.. .+...         
T Consensus       157 sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~  236 (397)
T KOG4283|consen  157 SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP  236 (397)
T ss_pred             cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccC
Confidence            4567889999999999999999999999999999999999998776 579999999999999753 11111         


Q ss_pred             --E--EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         92 --F--KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        92 --~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                        .  ...|.+ .+..++|..++.++++++.|.++++|+..+|+..
T Consensus       237 p~~~~n~ah~g-kvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  237 PILKTNTAHYG-KVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             ccccccccccc-eeeeeeecccchhhhhccCccceEEeecccCccc
Confidence              1  123333 4999999999999999999999999999988653

>KOG0305|consensus

Probab=99.74  E-value=4.3e-17  Score=109.76  Aligned_cols=120  Identities=24%  Similarity=0.275  Sum_probs=103.6

Q ss_pred             eeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEe-cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         14 TASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQ-HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      ...++++.|  +|.+|++|..+|.|.|||..+.+.+..+.+ |...|.+++|.  ...+.+|+.++.|..+|++..+...
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            567778877  899999999999999999999999999888 99999999996  6789999999999999998877555


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .....|... |..+.|++|+.++++|+.|+.+.|||.....++..+
T Consensus       295 ~~~~~H~qe-VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~  339 (484)
T KOG0305|consen  295 STLQGHRQE-VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF  339 (484)
T ss_pred             hhhhcccce-eeeeEECCCCCeeccCCCccceEeccCCCccccEEE
Confidence            522344444 999999999999999999999999999776666544

>KOG1332|consensus

Probab=99.74  E-value=5.7e-17  Score=99.29  Aligned_cols=119  Identities=21%  Similarity=0.323  Sum_probs=98.6

Q ss_pred             cceeeEEEEe--cCCcEEEEeCCCCeEEEEEccCC---ceeeEEEecCCCeEEEEECC--CCCEEEEecCCCcEEEEEeC
Q psy11518         12 SHTASVRSVA--ATSKLAASSGADETVVLYDMVKR---KQSGALMQHEGTITCLKFTP--EGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        12 ~~~~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~   84 (139)
                      .|...|-+..  +-|+.|++++.|++|+|+..+..   ..+.++.+|.++|..++|..  -|.+||+++.||.|.+|.-.
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~   88 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEE   88 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecC
Confidence            5666555544  47999999999999999999765   45788999999999999965  79999999999999999999


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCC--cEEEEEcCCCeEEEEEcCCC
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSG--KLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~  130 (139)
                      +++.........+...|++++|.|.+  -.|++++.||.|.|.+.++.
T Consensus        89 ~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~  136 (299)
T KOG1332|consen   89 NGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS  136 (299)
T ss_pred             CCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence            88765555444445559999999965  48889999999999998765

>KOG0647|consensus

Probab=99.74  E-value=1.4e-16  Score=100.02  Aligned_cols=116  Identities=17%  Similarity=0.254  Sum_probs=98.4

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCC--CEEEEecCCCcEEEEEeCCce
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEG--SHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      .|.+++++++|  +|..+++|+.|+.+++||+.++ .+..+..|.++|.++.|-+..  ..|+||+.|.+|+.||.+...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            47889999999  8999999999999999999999 456677899999999998754  489999999999999999988


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      +...+..+.+   ++++..  ...+++++..++.|.+|+|+++..+
T Consensus       149 pv~t~~LPeR---vYa~Dv--~~pm~vVata~r~i~vynL~n~~te  189 (347)
T KOG0647|consen  149 PVATLQLPER---VYAADV--LYPMAVVATAERHIAVYNLENPPTE  189 (347)
T ss_pred             eeeeeeccce---eeehhc--cCceeEEEecCCcEEEEEcCCCcch
Confidence            8888755554   666554  4668889999999999999876543

>KOG1539|consensus

Probab=99.73  E-value=4.9e-16  Score=108.31  Aligned_cols=125  Identities=20%  Similarity=0.307  Sum_probs=104.5

Q ss_pred             eeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEE---EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         14 TASVRSVAATSKLAASSGADETVVLYDMVKRKQSGAL---MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        14 ~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      .....|+++-|++.+.|...|.|-+|++.+|-....+   +.|..+|+.++....++.+++++.+|.+++||..+..++.
T Consensus       450 ~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~  529 (910)
T KOG1539|consen  450 NATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK  529 (910)
T ss_pred             ceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee
Confidence            3455666779999999999999999999999888777   5899999999999888999999999999999987654332


Q ss_pred             EEE---------------------------------------eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         91 LFK---------------------------------------KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        91 ~~~---------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      .+.                                       ...++.+|++++|+|||+|+++++.|++|++||+.++.
T Consensus       530 ~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~  609 (910)
T KOG1539|consen  530 SLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT  609 (910)
T ss_pred             eeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc
Confidence            211                                       11234459999999999999999999999999999999


Q ss_pred             eeEEEec
Q psy11518        132 SAYITNL  138 (139)
Q Consensus       132 ~~~~~~~  138 (139)
                      .+-.+.+
T Consensus       610 lID~~~v  616 (910)
T KOG1539|consen  610 LIDGLLV  616 (910)
T ss_pred             eeeeEec
Confidence            8876654

>KOG2048|consensus

Probab=99.73  E-value=1.7e-15  Score=103.49  Aligned_cols=125  Identities=22%  Similarity=0.303  Sum_probs=110.3

Q ss_pred             cceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         12 SHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        12 ~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      +....+-.++| ++..|.+.+.+|+|.-||+.+.+++..++...+.|.+++.+|.+..++.|+.||.+..++...++...
T Consensus        67 ~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~  146 (691)
T KOG2048|consen   67 PEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY  146 (691)
T ss_pred             CCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE
Confidence            45567788888 78999999999999999999999999999999999999999999999999999988888888887766


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ........+++.+++|+|++..++.|+.||.|++||..++..+..+
T Consensus       147 ~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~  192 (691)
T KOG2048|consen  147 KRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII  192 (691)
T ss_pred             EeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe
Confidence            5544555556999999999999999999999999999999888743

>KOG0646|consensus

Probab=99.73  E-value=2e-16  Score=103.95  Aligned_cols=125  Identities=18%  Similarity=0.285  Sum_probs=101.4

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEcc---------CCceeeEEEecCCCeEEEEECCC--CCEEEEecCCCc
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMV---------KRKQSGALMQHEGTITCLKFTPE--GSHLISCSDDGS   77 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~   77 (139)
                      .+|...|+|+.|  |+.++++|+.||.|.+|.+.         +-++++.+..|.-+|+.+...+.  ..++++++.|.+
T Consensus       120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t  199 (476)
T KOG0646|consen  120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT  199 (476)
T ss_pred             HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence            468889999999  99999999999999999873         23678889999999999987764  457899999999


Q ss_pred             EEEEEeCCceEEEEEE--------------------------------------------------------eCCCC-cc
Q psy11518         78 IAIFRVGSWQLEKLFK--------------------------------------------------------KAHKG-TA  100 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~--------------------------------------------------------~~~~~-~~  100 (139)
                      +++||+..+.++..+.                                                        ..|.. .+
T Consensus       200 ~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~  279 (476)
T KOG0646|consen  200 IKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA  279 (476)
T ss_pred             EEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence            9999986544331110                                                        12232 35


Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      |+|++.+-||..|++|+.||.+.|||+.+.+.+..
T Consensus       280 ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt  314 (476)
T KOG0646|consen  280 ITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT  314 (476)
T ss_pred             eeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence            99999999999999999999999999988776544

>KOG0641|consensus

Probab=99.73  E-value=6.5e-16  Score=94.18  Aligned_cols=117  Identities=18%  Similarity=0.322  Sum_probs=103.1

Q ss_pred             ecceeeEEEEe-cCCcEEEEeCCCCeEEEEEccCCceeeEEEe--c-----CCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         11 HSHTASVRSVA-ATSKLAASSGADETVVLYDMVKRKQSGALMQ--H-----EGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        11 ~~~~~~v~~~~-~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~--~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      .+|.+.|.++- |++-++++|+.|.+|++||+....++.++..  |     .+.|.+++..|.|++|++|-.|....+||
T Consensus       180 sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd  259 (350)
T KOG0641|consen  180 SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD  259 (350)
T ss_pred             cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence            47888888875 6999999999999999999998877766542  2     35689999999999999999999999999


Q ss_pred             eCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         83 VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ++.++.++.+ .+|... |.++.|+|.-.++++++.|..|++=|+..
T Consensus       260 irg~r~iq~f-~phsad-ir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  260 IRGGRMIQRF-HPHSAD-IRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             eeCCceeeee-CCCccc-eeEEEeCCCceEEEEecccceEEEeeccc
Confidence            9999999998 677766 99999999999999999999999999863

>KOG0269|consensus

Probab=99.73  E-value=2.7e-17  Score=113.61  Aligned_cols=117  Identities=17%  Similarity=0.317  Sum_probs=96.7

Q ss_pred             ceeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         13 HTASVRSVAA---TSKLAASSGADETVVLYDMVKR-KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        13 ~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ....|.++.|   .+..++++...|.+.+||++.. ++...+..|.++|.|+.|+|++.+||||++|++|++||....+.
T Consensus       175 nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~  254 (839)
T KOG0269|consen  175 NSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA  254 (839)
T ss_pred             cchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc
Confidence            3445556665   7889999999999999999764 56677889999999999999999999999999999999987776


Q ss_pred             EEEEEeCCCCcceeEEEEccCCc-EEEEEc--CCCeEEEEEcCCC
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGK-LALSVG--KDKTLRTWNLVKG  130 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~  130 (139)
                      .... ..+...++.++.|-|..+ .|++++  .|-.|+|||++..
T Consensus       255 ~~~~-tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP  298 (839)
T KOG0269|consen  255 KPKH-TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP  298 (839)
T ss_pred             ccee-EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccc
Confidence            6555 455666799999999776 455555  4888999999764

>KOG2394|consensus

Probab=99.73  E-value=7.3e-17  Score=107.94  Aligned_cols=120  Identities=24%  Similarity=0.371  Sum_probs=96.6

Q ss_pred             eeeEEEEec---CCcEEEEeCCCCeEEEEEccCC----------------------------ceeeEEEecCCCeEEEEE
Q psy11518         14 TASVRSVAA---TSKLAASSGADETVVLYDMVKR----------------------------KQSGALMQHEGTITCLKF   62 (139)
Q Consensus        14 ~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~----------------------------~~~~~~~~~~~~v~~~~~   62 (139)
                      ...++|+.|   +...++++-.+|.+.+||..-.                            .++.....-.+.|...+|
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F  298 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF  298 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence            367888888   7778888888999999975310                            111111223457888999


Q ss_pred             CCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         63 TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        63 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      +|||++||+.+.||.+++||..+.+++..+ ....++ ..|++|+|||++|++|++|..|.||.+..++.+..
T Consensus       299 S~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-kSYFGG-LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  299 SPDGKYLATVSQDGFLRIFDFDTQELLGVM-KSYFGG-LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             cCCCceEEEEecCceEEEeeccHHHHHHHH-Hhhccc-eEEEEEcCCccEEEecCCcceEEEEEeccceEEEe
Confidence            999999999999999999999988887766 455566 99999999999999999999999999999887754

>KOG0308|consensus

Probab=99.72  E-value=3.8e-16  Score=106.46  Aligned_cols=117  Identities=25%  Similarity=0.338  Sum_probs=107.6

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      |+..++.+++-  .+..+++|+..+-+++||..+.+.+..+.+|+..|.++..+++|+.+++++.||+|++||+...+++
T Consensus       169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl  248 (735)
T KOG0308|consen  169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCL  248 (735)
T ss_pred             CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccccee
Confidence            66777787776  5668999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ..+ ..|... ++++..+|+=..+++|+.||.|..=|+++.
T Consensus       249 ~T~-~vH~e~-VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  249 ATY-IVHKEG-VWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             eeE-EeccCc-eEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence            998 667777 999999999999999999999999999884

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.72  E-value=1.5e-15  Score=93.03  Aligned_cols=116  Identities=18%  Similarity=0.353  Sum_probs=88.8

Q ss_pred             eeEEEEec--CCcEEEE--eCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC---CCcEEEEEeCCce
Q psy11518         15 ASVRSVAA--TSKLAAS--SGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD---DGSIAIFRVGSWQ   87 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~--~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~   87 (139)
                      ++|.+++|  +++.+++  |..+..|.+||++ ++.+..+.  ...+..+.|+|+|+++++++.   .|.|.+||.++.+
T Consensus        60 ~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~  136 (194)
T PF08662_consen   60 GPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK  136 (194)
T ss_pred             CceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE
Confidence            45777776  7777544  4466799999986 66666664  456789999999999998864   4669999999877


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcC------CCeEEEEEcCCCceeEEEec
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGK------DKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .+...  . +.. +..++|+|+|++++++..      |+.++||+. +|+.+....+
T Consensus       137 ~i~~~--~-~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~~~  188 (194)
T PF08662_consen  137 KISTF--E-HSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKKPF  188 (194)
T ss_pred             Eeecc--c-cCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEecch
Confidence            77665  2 223 789999999999998863      788999998 5777766543

>KOG0293|consensus

Probab=99.72  E-value=1.1e-16  Score=104.24  Aligned_cols=125  Identities=20%  Similarity=0.308  Sum_probs=101.5

Q ss_pred             eeeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE-ecCCCeEEEEECCCCCEEEEecCCCcE
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTPEGSHLISCSDDGSI   78 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (139)
                      +++.+++.  +|..+|..+.|  |.+++++++.+..+.+||+.++.....+. ++...+.+++|.|||..+++|+.|+.+
T Consensus       259 ~kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i  336 (519)
T KOG0293|consen  259 FKLKKTLV--GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTI  336 (519)
T ss_pred             eeeeeeee--cccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcE
Confidence            45556665  56666666655  99999999999999999999998877765 346788999999999999999999999


Q ss_pred             EEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ..||++... .... ...+.+.|.+++..+||+++++.+.|..|++|+.++.
T Consensus       337 ~~wdlDgn~-~~~W-~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~  386 (519)
T KOG0293|consen  337 IMWDLDGNI-LGNW-EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREAR  386 (519)
T ss_pred             EEecCCcch-hhcc-cccccceeEEEEEcCCCcEEEEEecccceeeechhhh
Confidence            999987544 3333 2233345999999999999999999999999998754

>KOG0288|consensus

Probab=99.72  E-value=6.2e-16  Score=100.56  Aligned_cols=122  Identities=15%  Similarity=0.309  Sum_probs=102.1

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeC
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA   95 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~   95 (139)
                      .+.++......+++|..|+.|++||..+..+......+. .|+++..++++..+.+++.|..+.+.|+++......+.-.
T Consensus       304 ~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~  382 (459)
T KOG0288|consen  304 QCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE  382 (459)
T ss_pred             cccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc
Confidence            344444456678889999999999999999999888765 8999999999999999999999999999998877666322


Q ss_pred             C--CCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         96 H--KGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        96 ~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .  .....+.+.|+|++.++++|+.||.|+||++.+++.....+.
T Consensus       383 g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~  427 (459)
T KOG0288|consen  383 GFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL  427 (459)
T ss_pred             ccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence            1  122378899999999999999999999999999998877653

>KOG0278|consensus

Probab=99.72  E-value=4.5e-17  Score=100.20  Aligned_cols=131  Identities=19%  Similarity=0.289  Sum_probs=99.2

Q ss_pred             EEEeecceeeEEEEec-----CCcEEEEeCCCCeEEEEEccCCceeeEEEecCC--------------------------
Q psy11518          7 TFVTHSHTASVRSVAA-----TSKLAASSGADETVVLYDMVKRKQSGALMQHEG--------------------------   55 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~-----~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~--------------------------   55 (139)
                      .+..++|..+|..+.|     +|-+|++++.|+.-++-+=+++.=+.+|.+|.+                          
T Consensus         7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen    7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            4567788888888876     777888888888877777666666665555544                          


Q ss_pred             ---------------CeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCC
Q psy11518         56 ---------------TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK  120 (139)
Q Consensus        56 ---------------~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  120 (139)
                                     -|..++|+.+.++|++|+.+..+++||++..+....-...|.++ |..+.|....+.++++++|+
T Consensus        87 ~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~-Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen   87 DAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG-IRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             hhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc-ceeEEEeccCceEEeeccCC
Confidence                           45667777777777777777777777776655433332455655 99999999999999999999


Q ss_pred             eEEEEEcCCCceeEEEec
Q psy11518        121 TLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       121 ~i~i~d~~~~~~~~~~~~  138 (139)
                      .||+||.++++.++++.+
T Consensus       166 tVRLWD~rTgt~v~sL~~  183 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLEF  183 (334)
T ss_pred             ceEEEEeccCcEEEEEec
Confidence            999999999999998875

>KOG1332|consensus

Probab=99.71  E-value=2.6e-16  Score=96.43  Aligned_cols=124  Identities=23%  Similarity=0.315  Sum_probs=101.9

Q ss_pred             EEEeecceeeEEEEec----CCcEEEEeCCCCeEEEEEccCC--ceeeEEEecCCCeEEEEECCC--CCEEEEecCCCcE
Q psy11518          7 TFVTHSHTASVRSVAA----TSKLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFTPE--GSHLISCSDDGSI   78 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~----~~~~l~~~~~~~~v~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i   78 (139)
                      .....||.+++..+.|    -|.+|++++.||.|.||.-..+  ...+....|...|++++|.|.  |-.|++++.||.|
T Consensus        49 l~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~v  128 (299)
T KOG1332|consen   49 LAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKV  128 (299)
T ss_pred             eeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcE
Confidence            3455689999999987    6899999999999999998777  345566789999999999995  5678999999999


Q ss_pred             EEEEeCCc--eEEEEEEeCCCCcceeEEEEccC---C-----------cEEEEEcCCCeEEEEEcCCCc
Q psy11518         79 AIFRVGSW--QLEKLFKKAHKGTAVNHISIHPS---G-----------KLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        79 ~~~d~~~~--~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      .+++.++.  -....+...|..+ +++++|.|.   |           +.|++|+.|..|.||+..+++
T Consensus       129 svl~~~~~g~w~t~ki~~aH~~G-vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~  196 (299)
T KOG1332|consen  129 SVLTYDSSGGWTTSKIVFAHEIG-VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS  196 (299)
T ss_pred             EEEEEcCCCCccchhhhhccccc-cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc
Confidence            99998764  2333444677777 999999995   4           569999999999999998864

>KOG1539|consensus

Probab=99.71  E-value=7.2e-16  Score=107.49  Aligned_cols=115  Identities=26%  Similarity=0.416  Sum_probs=95.5

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceee----------------------------------------
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSG----------------------------------------   48 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~----------------------------------------   48 (139)
                      ..|..+|..++.  -++.+++++.+|.+++||+.+...+.                                        
T Consensus       490 ~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv  569 (910)
T KOG1539|consen  490 PAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV  569 (910)
T ss_pred             ccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence            357778888887  45679999999999999987543221                                        


Q ss_pred             -EEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC-CeEEEEE
Q psy11518         49 -ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD-KTLRTWN  126 (139)
Q Consensus        49 -~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d  126 (139)
                       .|.+|...|+.++|||+|+++++++.|++|++||+.++.++..+.   ...++..+.|+|+|.+|++...| .-|.+|.
T Consensus       570 R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~---vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  570 REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL---VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe---cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence             335799999999999999999999999999999999999998883   33348899999999999999987 6699996


Q ss_pred             cC
Q psy11518        127 LV  128 (139)
Q Consensus       127 ~~  128 (139)
                      -.
T Consensus       647 Nk  648 (910)
T KOG1539|consen  647 NK  648 (910)
T ss_pred             ch
Confidence            43

>KOG1009|consensus

Probab=99.71  E-value=1.4e-15  Score=98.72  Aligned_cols=120  Identities=22%  Similarity=0.512  Sum_probs=95.2

Q ss_pred             eeEEEEec---CCcEEEEeCCCCeEEEEEccCCc---------eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         15 ASVRSVAA---TSKLAASSGADETVVLYDMVKRK---------QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        15 ~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      .++..+.+   ..+.+++|+.|..|++|-+..+.         .+..+..|+..|+++.|+|+|..||+|+.+|.+.+|.
T Consensus        14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk   93 (434)
T KOG1009|consen   14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK   93 (434)
T ss_pred             CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence            45566665   33489999999999999986532         2345668999999999999999999999999999998


Q ss_pred             eC--------C--------ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         83 VG--------S--------WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        83 ~~--------~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..        +        +.....+ ..|... +..++|+|++.++++++.|..+++||+..|+.+...
T Consensus        94 ~~~~~~~~~d~e~~~~ke~w~v~k~l-r~h~~d-iydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~  161 (434)
T KOG1009|consen   94 QGDVRIFDADTEADLNKEKWVVKKVL-RGHRDD-IYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL  161 (434)
T ss_pred             ecCcCCccccchhhhCccceEEEEEe-cccccc-hhhhhccCCCceeeeeeccceEEEEEeccceeEeec
Confidence            75        2        1112222 334444 999999999999999999999999999999887654

>KOG4283|consensus

Probab=99.71  E-value=7.1e-16  Score=96.99  Aligned_cols=117  Identities=16%  Similarity=0.286  Sum_probs=99.6

Q ss_pred             ecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCC---CCEEEEecCCCcEEEEEeC
Q psy11518         11 HSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE---GSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~~~d~~   84 (139)
                      .+|...|....|   |..++.+++-|.++++||..+.+....|+ .++.|.+-+|+|-   ..++|+|..+-+|++-|+.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            356777777776   88899999999999999999998887776 4567888889883   4567889999999999999


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcE-EEEEcCCCeEEEEEcCCC
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKL-ALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~  130 (139)
                      .|.....+ ..|++. |.++.|+|...+ |++|+.||.|++||++..
T Consensus       177 SGs~sH~L-sGHr~~-vlaV~Wsp~~e~vLatgsaDg~irlWDiRra  221 (397)
T KOG4283|consen  177 SGSFSHTL-SGHRDG-VLAVEWSPSSEWVLATGSADGAIRLWDIRRA  221 (397)
T ss_pred             CCcceeee-ccccCc-eEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence            99998888 678877 999999998875 578889999999999864

>KOG0267|consensus

Probab=99.71  E-value=2.6e-17  Score=113.17  Aligned_cols=121  Identities=26%  Similarity=0.442  Sum_probs=108.1

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      +|...+..+.|  -+.+.+.|+.|+.+++||.+...+.+.+.+|...+.++.|+|+|++++.++.|..+++||...++..
T Consensus       110 gh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~  189 (825)
T KOG0267|consen  110 GHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS  189 (825)
T ss_pred             ccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccc
Confidence            66667777666  7888999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ..| ..|.+. +..+.|+|..-++..|+.|+.+++||+++-+.+.
T Consensus       190 ~ef-~~~e~~-v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  190 KEF-KSHEGK-VQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             ccc-cccccc-ccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence            888 455555 8999999999999999999999999999765554

>KOG0300|consensus

Probab=99.70  E-value=1.2e-16  Score=101.40  Aligned_cols=131  Identities=21%  Similarity=0.355  Sum_probs=106.9

Q ss_pred             eeeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEE
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIA   79 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (139)
                      +++++.+.  ||...|..++.  ..+.+.+++.|.+-+||.+++++++..+.+|.+.|+++.|++.+.++++++.|+..+
T Consensus       138 ~~lvre~~--GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taH  215 (481)
T KOG0300|consen  138 FRLVRELE--GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAH  215 (481)
T ss_pred             Eeehhhhc--ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchH
Confidence            44555554  78888888886  556888999999999999999999999999999999999999999999999999999


Q ss_pred             EEEe------CC------------------------------c----eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC
Q psy11518         80 IFRV------GS------------------------------W----QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD  119 (139)
Q Consensus        80 ~~d~------~~------------------------------~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  119 (139)
                      +|..      ..                              +    .++-.+ ..|.. .|.+..|-..|+.+++++.|
T Consensus       216 IW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l-tgH~~-vV~a~dWL~gg~Q~vTaSWD  293 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL-TGHRA-VVSACDWLAGGQQMVTASWD  293 (481)
T ss_pred             HHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee-ecccc-ceEehhhhcCcceeeeeecc
Confidence            9962      10                              0    011122 23333 38888899999999999999


Q ss_pred             CeEEEEEcCCCceeEEE
Q psy11518        120 KTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       120 ~~i~i~d~~~~~~~~~~  136 (139)
                      ++..+||++++..+..+
T Consensus       294 RTAnlwDVEtge~v~~L  310 (481)
T KOG0300|consen  294 RTANLWDVETGEVVNIL  310 (481)
T ss_pred             ccceeeeeccCceeccc
Confidence            99999999999988764

>KOG1063|consensus

Probab=99.70  E-value=1.8e-16  Score=108.57  Aligned_cols=127  Identities=23%  Similarity=0.306  Sum_probs=103.1

Q ss_pred             eeEEEEEeecceeeEEEEecCCcEEEEeCCC-----CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCc
Q psy11518          3 TLTQTFVTHSHTASVRSVAATSKLAASSGAD-----ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGS   77 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~-----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   77 (139)
                      +.++++-.++......+++++++++|+++..     ..|++|+..+-...+.+.+|.-.|+.++|+|++++|++.++|++
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt  595 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT  595 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce
Confidence            3345555566666666777789999999854     36899999988888899999999999999999999999999999


Q ss_pred             EEEEEeCCceEE---EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         78 IAIFRVGSWQLE---KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        78 i~~~d~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      +.+|........   ......|..- |.+.+|+|++.++++++.|..|.+|.....
T Consensus       596 ~sl~~~~~~~~~e~~fa~~k~HtRI-IWdcsW~pde~~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  596 VSLYEVQEDIKDEFRFACLKAHTRI-IWDCSWSPDEKYFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             EEeeeeecccchhhhhccccccceE-EEEcccCcccceeEEecCCceEEEEeccCc
Confidence            999998554321   1112345544 999999999999999999999999998876

>KOG0299|consensus

Probab=99.70  E-value=1.5e-16  Score=104.41  Aligned_cols=124  Identities=19%  Similarity=0.358  Sum_probs=93.3

Q ss_pred             cceeeEEEE--ecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~--~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      +|...+.++  ++|+++|++|+.|..|.||+..+.+.+..+++|.+.|.+++|-.....+.+++.|+.+++|+++....+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV  279 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence            455555554  459999999999999999999999999999999999999999988889999999999999998654333


Q ss_pred             EEEEeCCCCcceeEE-----------------------------EEcc-----------CCcEEEEEcCCCeEEEEEcCC
Q psy11518         90 KLFKKAHKGTAVNHI-----------------------------SIHP-----------SGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~-----------------------------~~~~-----------~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ..+ ..|... |.++                             -|.+           +...+++|+++|.|.+|++.+
T Consensus       280 etl-yGHqd~-v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~K  357 (479)
T KOG0299|consen  280 ETL-YGHQDG-VLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLK  357 (479)
T ss_pred             HHH-hCCccc-eeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecc
Confidence            222 222221 2222                             2222           445677788888888888888


Q ss_pred             CceeEEEe
Q psy11518        130 GRSAYITN  137 (139)
Q Consensus       130 ~~~~~~~~  137 (139)
                      .++++...
T Consensus       358 Kkplf~~~  365 (479)
T KOG0299|consen  358 KKPLFTSR  365 (479)
T ss_pred             cCceeEee
Confidence            88777654

>KOG0303|consensus

Probab=99.70  E-value=6.1e-16  Score=100.32  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=101.5

Q ss_pred             cceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         12 SHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        12 ~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      +|...|.-+.|   ..+.|++++.|..|.+|++.+++.+.++. |...|.+++|+.+|.++++.++|..|++||.++++.
T Consensus       129 gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~  207 (472)
T KOG0303|consen  129 GHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV  207 (472)
T ss_pred             ecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE
Confidence            55555555555   67789999999999999999999998887 999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEc---CCCeEEEEEcCCCc
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVG---KDKTLRTWNLVKGR  131 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~  131 (139)
                      ...- ..|.+......-|-.++.++.+|.   .++++.+||..+-+
T Consensus       208 v~e~-~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~  252 (472)
T KOG0303|consen  208 VSEG-VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLE  252 (472)
T ss_pred             eeec-ccccCCCcceeEEeccCceeeeccccccccceeccCccccc
Confidence            8887 788888788888999999555554   47899999877643

>KOG0973|consensus

Probab=99.69  E-value=1.8e-15  Score=107.56  Aligned_cols=131  Identities=22%  Similarity=0.437  Sum_probs=104.4

Q ss_pred             eeeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEE
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIA   79 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (139)
                      |+....+.  +|...|.++.|  ++.++++++.|++|.+|+..+.+.+..+.+|.+.|-.+.|+|-|++||+-+.|+.|+
T Consensus       119 wk~~~~l~--~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtik  196 (942)
T KOG0973|consen  119 WKVVSILR--GHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLK  196 (942)
T ss_pred             eeEEEEEe--cCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEE
Confidence            45555555  68888888887  799999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCceEEEEE--------------------------------------------------E-eCCCCcceeEEEEcc
Q psy11518         80 IFRVGSWQLEKLF--------------------------------------------------K-KAHKGTAVNHISIHP  108 (139)
Q Consensus        80 ~~d~~~~~~~~~~--------------------------------------------------~-~~~~~~~v~~~~~~~  108 (139)
                      +|++.++.....+                                                  . ..|.. ++.++.|+|
T Consensus       197 vwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP  275 (942)
T KOG0973|consen  197 VWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNP  275 (942)
T ss_pred             EEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeCh
Confidence            9996442211111                                                  0 23343 488899987


Q ss_pred             -----CCc------------EEEEEcCCCeEEEEEcCCCceeEE
Q psy11518        109 -----SGK------------LALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus       109 -----~~~------------~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                           +.+            .+++|+.|+.|.||.....+++..
T Consensus       276 ~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v  319 (942)
T KOG0973|consen  276 KLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV  319 (942)
T ss_pred             HHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence                 111            567888999999999877777654

>KOG0288|consensus

Probab=99.69  E-value=2.2e-15  Score=98.02  Aligned_cols=110  Identities=26%  Similarity=0.386  Sum_probs=95.1

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEec----CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQH----EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      .-..+.+++..+.+.+.|.++.+.|..+......+...    ....+.+.|||++.|+++|+.||.|++|++.++++...
T Consensus       345 tSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~  424 (459)
T KOG0288|consen  345 TSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKV  424 (459)
T ss_pred             eeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEE
Confidence            33444569999999999999999999998887776531    23368899999999999999999999999999999999


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEE
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW  125 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  125 (139)
                      +...+....|++++|+|.|..+++++.++.+.+|
T Consensus       425 l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  425 LSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             eccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            8766666469999999999999999999999998

>KOG1036|consensus

Probab=99.69  E-value=2.2e-15  Score=94.78  Aligned_cols=117  Identities=19%  Similarity=0.286  Sum_probs=96.0

Q ss_pred             cceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         12 SHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        12 ~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      .|..++++++| +...+++|+.||.|+.+|+.++... .+-.|...+.|+.+++....+++|+.|+.|++||.++.....
T Consensus        52 ~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~  130 (323)
T KOG1036|consen   52 KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG  130 (323)
T ss_pred             ecCCceeeeeccCCceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc
Confidence            36778999999 8889999999999999999887644 344689999999999988899999999999999998755544


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      .+....   .|.++...  +..|++|+.|+.+.+||+++.....
T Consensus       131 ~~d~~k---kVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~  169 (323)
T KOG1036|consen  131 TFDQGK---KVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF  169 (323)
T ss_pred             ccccCc---eEEEEecc--CCEEEEeecCceEEEEEcccccchh
Confidence            442222   48887764  7889999999999999999865543

>KOG2445|consensus

Probab=99.68  E-value=1.3e-14  Score=91.65  Aligned_cols=120  Identities=18%  Similarity=0.330  Sum_probs=94.1

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC----ceeeEEEecCCCeEEEEECC--CCCEEEEecCCCcEEEEEe
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKR----KQSGALMQHEGTITCLKFTP--EGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~   83 (139)
                      +|..-+.|+.|  .|+.+++++.|++++|||....    .+....+.|.+.|..+.|.+  -|+.+|+++.|+.+.+|.-
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            67777888887  7999999999999999997544    44556678999999999975  4899999999999999986


Q ss_pred             CC---------ceEEEEEEeCCCCcceeEEEEcc--CCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         84 GS---------WQLEKLFKKAHKGTAVNHISIHP--SGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        84 ~~---------~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      ..         +.....+ ...+. .|+++.|.|  -|-.+++++.||.+|||+..+...+
T Consensus        91 ~~~~~~~~~~~Wv~~ttl-~Dsrs-sV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL  149 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTL-VDSRS-SVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL  149 (361)
T ss_pred             cccccccccceeEEEEEe-ecCCc-ceeEEEecchhcceEEEEeccCcEEEEEecCCcccc
Confidence            21         2223333 23333 499999999  5668999999999999987654433

>KOG0649|consensus

Probab=99.68  E-value=6.8e-15  Score=90.46  Aligned_cols=121  Identities=10%  Similarity=0.153  Sum_probs=94.2

Q ss_pred             EEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCC
Q psy11518         17 VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH   96 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~   96 (139)
                      .+.+.|..+.++.++.|+.+.-||+++++...++++|...+.++.-......+++|+.||.+++||+++++....++...
T Consensus       119 am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk  198 (325)
T KOG0649|consen  119 AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK  198 (325)
T ss_pred             eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc
Confidence            44455656666667789999999999999999999999999999886666678999999999999999999888774332


Q ss_pred             CCcc------eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         97 KGTA------VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        97 ~~~~------v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +...      -+-.+..-+..++++|+. ..+.+|+++..++...+.+
T Consensus       199 ~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhLrsse~t~vfpi  245 (325)
T KOG0649|consen  199 NPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHLRSSESTCVFPI  245 (325)
T ss_pred             ChhhcCcccCceeEEEeccCceEEecCC-CceeEEeccCCCceEEEec
Confidence            2210      111444456778888775 5699999999998887764

>KOG2096|consensus

Probab=99.68  E-value=7.2e-16  Score=97.82  Aligned_cols=123  Identities=20%  Similarity=0.303  Sum_probs=93.5

Q ss_pred             eeeEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEcc---CC-----ceeeEEEecCCCeEEEEECCCCCEEEEec
Q psy11518          2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMV---KR-----KQSGALMQHEGTITCLKFTPEGSHLISCS   73 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   73 (139)
                      .++++.+........-.+++|+|+++++++-..-|++|++-   .|     ..+..+++|.+.|...+|+++.+.+++.+
T Consensus       218 Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS  297 (420)
T KOG2096|consen  218 GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS  297 (420)
T ss_pred             CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe
Confidence            45566666666666777889999999999999999999962   22     34567889999999999999999999999


Q ss_pred             CCCcEEEEEeCC-------------c---------eE-------------------EEE-----------EEeCCCCcce
Q psy11518         74 DDGSIAIFRVGS-------------W---------QL-------------------EKL-----------FKKAHKGTAV  101 (139)
Q Consensus        74 ~d~~i~~~d~~~-------------~---------~~-------------------~~~-----------~~~~~~~~~v  101 (139)
                      .||.+++||.+-             +         .+                   +..           ++..|... |
T Consensus       298 kDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~-I  376 (420)
T KOG2096|consen  298 KDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTT-I  376 (420)
T ss_pred             cCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCc-e
Confidence            999999999731             0         00                   001           11122333 8


Q ss_pred             eEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518        102 NHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      .+++|+++|++++++++ +.++++.
T Consensus       377 s~is~~~~g~~~atcGd-r~vrv~~  400 (420)
T KOG2096|consen  377 SSISYSSDGKYIATCGD-RYVRVIR  400 (420)
T ss_pred             eeEEecCCCcEEeeecc-eeeeeec
Confidence            99999999999999884 5677764

>KOG0301|consensus

Probab=99.68  E-value=4e-15  Score=102.07  Aligned_cols=114  Identities=17%  Similarity=0.282  Sum_probs=98.0

Q ss_pred             ecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         11 HSHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        11 ~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      .+|...|..+.. ++..+++++.||.|+.|++ +++.+.+..+|++.+.+++...++..+++++.|+++++|+..  ++.
T Consensus       176 ~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~  252 (745)
T KOG0301|consen  176 SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECV  252 (745)
T ss_pred             ccchhheeeeEEecCCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceE
Confidence            368999999988 8889999999999999998 899999999999999999988888999999999999999976  566


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ..+.  +....++++.+-++|. +++|+.||.|+||..+..
T Consensus       253 q~I~--lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  253 QVIT--LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             EEEe--cCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence            6653  3333489999888887 678888999999987643

>KOG0299|consensus

Probab=99.68  E-value=8.6e-16  Score=100.93  Aligned_cols=76  Identities=14%  Similarity=0.217  Sum_probs=68.4

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +.+|...|.++.|  ....+++++.|+.|++|+++....+.++.+|+..|..+.-....+.+.+|+.|+++++|++..
T Consensus       240 ~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e  317 (479)
T KOG0299|consen  240 FKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE  317 (479)
T ss_pred             ccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccc
Confidence            4589999999999  666799999999999999999999999999999999998888888888888999999999943

>KOG0294|consensus

Probab=99.66  E-value=2e-15  Score=95.42  Aligned_cols=113  Identities=18%  Similarity=0.306  Sum_probs=86.3

Q ss_pred             cceeeEEEEecC----CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         12 SHTASVRSVAAT----SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        12 ~~~~~v~~~~~~----~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      .|.+.++++.|.    ...|++|+.||.|.+|+...-..+..+++|.+.|+.++.+|.+++.++.+.|+.++.||+-.++
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            478889999982    2379999999999999999999999999999999999999999999999999999999997776


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      .-......+.   ...+.|+|.|.+++.++.+ .|-+|.+.
T Consensus       161 ~a~v~~L~~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d  197 (362)
T KOG0294|consen  161 VAFVLNLKNK---ATLVSWSPQGDHFVVSGRN-KIDIYQLD  197 (362)
T ss_pred             cceeeccCCc---ceeeEEcCCCCEEEEEecc-EEEEEecc
Confidence            5555533333   2235556555544444432 34444444

>KOG2394|consensus

Probab=99.66  E-value=1.1e-15  Score=102.40  Aligned_cols=90  Identities=17%  Similarity=0.342  Sum_probs=78.3

Q ss_pred             eEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         16 SVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .+..++|  ||++||+.+.||.++|||+.+.+.+..++..-+...|++|+|||+++++|+.|..|.+|.+...+.+..- 
T Consensus       292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG-  370 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG-  370 (636)
T ss_pred             cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec-
Confidence            5555555  9999999999999999999998888887777788999999999999999999999999999988877665 


Q ss_pred             eCCCCcceeEEEEc
Q psy11518         94 KAHKGTAVNHISIH  107 (139)
Q Consensus        94 ~~~~~~~v~~~~~~  107 (139)
                      ..|+.. |..++|.
T Consensus       371 qGHkSW-Vs~VaFD  383 (636)
T KOG2394|consen  371 QGHKSW-VSVVAFD  383 (636)
T ss_pred             cccccc-eeeEeec
Confidence            566666 8888887

>KOG0301|consensus

Probab=99.66  E-value=4.8e-15  Score=101.72  Aligned_cols=113  Identities=30%  Similarity=0.453  Sum_probs=95.4

Q ss_pred             eecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         10 THSHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        10 ~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ..+|...|.++.. ..+.+++|+.|.+|++|.  .++.+.+|.+|..-|..+++-+++ .+++++.||.|+.|++ +++.
T Consensus       136 l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~  211 (745)
T KOG0301|consen  136 LQGHTASVWAVASLPENTYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEV  211 (745)
T ss_pred             cCCcchheeeeeecCCCcEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCce
Confidence            5678888888775 455889999999999997  477889999999999999988764 5778899999999999 5666


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      +..+ ..|... +++++...++..++++++|++++||+-.
T Consensus       212 l~~~-~ghtn~-vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  212 LLEM-HGHTNF-VYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             eeee-eccceE-EEEEEecCCCCeEEEecCCceEEEeecC
Confidence            6666 566666 9999988889999999999999999986

>KOG0268|consensus

Probab=99.66  E-value=6.9e-16  Score=99.11  Aligned_cols=118  Identities=24%  Similarity=0.363  Sum_probs=94.3

Q ss_pred             eeEEEEec---CCcEEEEeCCCCeEEEEEccCCceee------------------------------------------E
Q psy11518         15 ASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSG------------------------------------------A   49 (139)
Q Consensus        15 ~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~------------------------------------------~   49 (139)
                      ..+.++.|   ....|++++.|+.|.+||+..+.++.                                          .
T Consensus       188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v  267 (433)
T KOG0268|consen  188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNV  267 (433)
T ss_pred             CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchh
Confidence            34555555   56678888899999999987765543                                          2


Q ss_pred             EEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        50 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ..+|.+.|..+.|+|.|+-+++|+.|..|++|..+.+.....+....-.. |.++.|+.|.+++++|++|+.|++|....
T Consensus       268 ~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~-V~~Vk~S~Dskyi~SGSdd~nvRlWka~A  346 (433)
T KOG0268|consen  268 HKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQH-VFCVKYSMDSKYIISGSDDGNVRLWKAKA  346 (433)
T ss_pred             hcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhhe-eeEEEEeccccEEEecCCCcceeeeecch
Confidence            24678889999999999999999999999999998887776663333333 99999999999999999999999998765


Q ss_pred             Ccee
Q psy11518        130 GRSA  133 (139)
Q Consensus       130 ~~~~  133 (139)
                      .+.+
T Consensus       347 sekl  350 (433)
T KOG0268|consen  347 SEKL  350 (433)
T ss_pred             hhhc
Confidence            5443

>KOG2110|consensus

Probab=99.65  E-value=3e-14  Score=91.72  Aligned_cols=122  Identities=18%  Similarity=0.288  Sum_probs=99.8

Q ss_pred             ceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEe---cCCCeEEEEECCCCCEEEEe--cCCCcEEEEEeCCce
Q psy11518         13 HTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ---HEGTITCLKFTPEGSHLISC--SDDGSIAIFRVGSWQ   87 (139)
Q Consensus        13 ~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~~~~~   87 (139)
                      .+.+|.++..+.+.|++.-++. |.|||+++.+.+.++..   +...+.++++++++.++|--  ...|.|.+||..+-+
T Consensus        86 fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   86 FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            3557788888888888887765 99999999999888764   44456666666677788744  336889999999998


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCe-EEEEEcCCCceeEEEe
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT-LRTWNLVKGRSAYITN  137 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~  137 (139)
                      ....+ ..|.+. +.+++|+++|.+|+++++.|+ ||+|.+.+|+.++.+.
T Consensus       165 ~v~~I-~aH~~~-lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR  213 (391)
T KOG2110|consen  165 PVNTI-NAHKGP-LAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR  213 (391)
T ss_pred             eeeEE-EecCCc-eeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence            88888 577777 999999999999999999988 8999999999887753

>KOG1274|consensus

Probab=99.65  E-value=7.9e-15  Score=103.22  Aligned_cols=122  Identities=20%  Similarity=0.327  Sum_probs=102.9

Q ss_pred             eEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         16 SVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      ++.++.+  +|++++.|+.|-.|++-+..+......+.+|+++|.++.|+|++++||+.+.||.|++||++++.....+.
T Consensus        98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen   98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            4445555  88899999999999999999999999999999999999999999999999999999999999887665542


Q ss_pred             eCC-----C-CcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         94 KAH-----K-GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        94 ~~~-----~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ...     . ...+..++|+|++..++..+.|+.|.+|+..+....+.+.
T Consensus       178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr  227 (933)
T KOG1274|consen  178 GVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLR  227 (933)
T ss_pred             cCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeec
Confidence            211     1 2236779999999999999999999999998887766553

>KOG1036|consensus

Probab=99.65  E-value=1e-14  Score=91.85  Aligned_cols=112  Identities=18%  Similarity=0.213  Sum_probs=92.5

Q ss_pred             eeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         14 TASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      ...|..+.|  ....|++++.||++++||+........++ |..++.+++|.+ ...+++|+-||.|+.+|+.++.....
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i   90 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI   90 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee
Confidence            456777777  56677778899999999998876555554 888999999986 46788999999999999988766544


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      -  .|... +.++...+....+++|+.|++|++||.++.
T Consensus        91 g--th~~~-i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~  126 (323)
T KOG1036|consen   91 G--THDEG-IRCIEYSYEVGCVISGSWDKTIKFWDPRNK  126 (323)
T ss_pred             c--cCCCc-eEEEEeeccCCeEEEcccCccEEEEecccc
Confidence            3  44444 999999998899999999999999999953

>KOG0268|consensus

Probab=99.64  E-value=1.8e-15  Score=97.23  Aligned_cols=126  Identities=15%  Similarity=0.307  Sum_probs=95.9

Q ss_pred             ecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC--
Q psy11518         11 HSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS--   85 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--   85 (139)
                      .+|...|.|++-   .-..+++|+.||.|++||+....++.++..|.+.|..+++..  ..+++++.|.+|+.|.+..  
T Consensus        63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p  140 (433)
T KOG0268|consen   63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPP  140 (433)
T ss_pred             cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCc
Confidence            578888888874   235689999999999999999999999999999999999976  6678888899899887422  


Q ss_pred             -------------------------ceEEEEEEeC---------CCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCC
Q psy11518         86 -------------------------WQLEKLFKKA---------HKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        86 -------------------------~~~~~~~~~~---------~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~  130 (139)
                                               |+.+..+...         -....|.++.|+|... .|+++++|+.|.+||++++
T Consensus       141 ~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~  220 (433)
T KOG0268|consen  141 LHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQA  220 (433)
T ss_pred             ceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccC
Confidence                                     1111111000         0111277888888554 6777889999999999999


Q ss_pred             ceeEEEec
Q psy11518        131 RSAYITNL  138 (139)
Q Consensus       131 ~~~~~~~~  138 (139)
                      +++..+.+
T Consensus       221 ~Pl~KVi~  228 (433)
T KOG0268|consen  221 SPLKKVIL  228 (433)
T ss_pred             Cccceeee
Confidence            99877643

>KOG0322|consensus

Probab=99.64  E-value=5.7e-15  Score=91.56  Aligned_cols=113  Identities=19%  Similarity=0.304  Sum_probs=89.8

Q ss_pred             ceeeEEEEec---CC--cEEEEeCCCCeEEEEEccCCceeeEE-------------------------------------
Q psy11518         13 HTASVRSVAA---TS--KLAASSGADETVVLYDMVKRKQSGAL-------------------------------------   50 (139)
Q Consensus        13 ~~~~v~~~~~---~~--~~l~~~~~~~~v~i~~~~~~~~~~~~-------------------------------------   50 (139)
                      ..+.++|..+   .+  -++++|.++|.+.+||+.++..+..+                                     
T Consensus       149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk  228 (323)
T KOG0322|consen  149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK  228 (323)
T ss_pred             ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence            4567777774   23  35678889999999999875221111                                     


Q ss_pred             -------------------EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc
Q psy11518         51 -------------------MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK  111 (139)
Q Consensus        51 -------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  111 (139)
                                         .-..-.|..+...||++.+|+++.|+.|++|..++..++..+ .-|... |.+++|+|+..
T Consensus       229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL-kyHsag-vn~vAfspd~~  306 (323)
T KOG0322|consen  229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL-KYHSAG-VNAVAFSPDCE  306 (323)
T ss_pred             ceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh-hhhhcc-eeEEEeCCCCc
Confidence                               001224677788899999999999999999999999999988 556666 99999999999


Q ss_pred             EEEEEcCCCeEEEEEc
Q psy11518        112 LALSVGKDKTLRTWNL  127 (139)
Q Consensus       112 ~l~~~~~d~~i~i~d~  127 (139)
                      .++.++.|++|.+|++
T Consensus       307 lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  307 LMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhccCCceEEeeec
Confidence            9999999999999987

>KOG0649|consensus

Probab=99.64  E-value=2e-14  Score=88.46  Aligned_cols=128  Identities=14%  Similarity=0.233  Sum_probs=99.7

Q ss_pred             EEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCc------eeeEEE--ec-----CCCeEEEEECCCCCEEEEec
Q psy11518          7 TFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRK------QSGALM--QH-----EGTITCLKFTPEGSHLISCS   73 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~------~~~~~~--~~-----~~~v~~~~~~~~~~~l~~~~   73 (139)
                      .+..++|.+++..+.|...+|++|+. |.|+-|......      ++.+..  -|     -..|+++...|..+-++.++
T Consensus        55 iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag  133 (325)
T KOG0649|consen   55 IVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG  133 (325)
T ss_pred             eeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec
Confidence            34557899999999997777777764 999988764321      111111  11     23588999999777777777


Q ss_pred             CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         74 DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        74 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .|+.+..||+.+++....+ ..|... +.++.--.....+++|++||++++||+++++.+..+.
T Consensus       134 GD~~~y~~dlE~G~i~r~~-rGHtDY-vH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie  195 (325)
T KOG0649|consen  134 GDGVIYQVDLEDGRIQREY-RGHTDY-VHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE  195 (325)
T ss_pred             CCeEEEEEEecCCEEEEEE-cCCcce-eeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence            9999999999999999988 788877 8888875556679999999999999999999988764

>KOG0771|consensus

Probab=99.63  E-value=2.1e-14  Score=93.51  Aligned_cols=120  Identities=16%  Similarity=0.195  Sum_probs=97.7

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE-----
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK-----   90 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-----   90 (139)
                      .++++.++|..+++++.||.+|+|+......+.....|...|.++.|+|+++.|++-+.| ..++|+.+++..+.     
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            666777799999999999999999988887787888899999999999999999999999 89999987761110     


Q ss_pred             ---------------------EE--E------------eCCC------------CcceeEEEEccCCcEEEEEcCCCeEE
Q psy11518         91 ---------------------LF--K------------KAHK------------GTAVNHISIHPSGKLALSVGKDKTLR  123 (139)
Q Consensus        91 ---------------------~~--~------------~~~~------------~~~v~~~~~~~~~~~l~~~~~d~~i~  123 (139)
                                           ..  .            ..+.            ...|++++.+++|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                                 00  0            0000            11389999999999999999999999


Q ss_pred             EEEcCCCceeEEE
Q psy11518        124 TWNLVKGRSAYIT  136 (139)
Q Consensus       124 i~d~~~~~~~~~~  136 (139)
                      |++..+-+.++..
T Consensus       307 i~~~~~lq~~~~v  319 (398)
T KOG0771|consen  307 IYDAKSLQRLQYV  319 (398)
T ss_pred             EEEeceeeeeEee
Confidence            9999887776543

>KOG1273|consensus

Probab=99.63  E-value=1.9e-15  Score=95.80  Aligned_cols=81  Identities=19%  Similarity=0.476  Sum_probs=72.9

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         57 ITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..|+.|++.|.++|.|+.||.+.+||+.+......+ ..|..+ |.+++|+++|+.|++++.|..+.+||+..|.+++.+
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l-saH~~p-i~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri  103 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML-SAHVRP-ITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI  103 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhh-hccccc-eeEEEecCCCCEeeeecCCceeEEEeccCCCceeEE
Confidence            589999999999999999999999999988866666 555554 999999999999999999999999999999999888


Q ss_pred             ecC
Q psy11518        137 NLS  139 (139)
Q Consensus       137 ~~~  139 (139)
                      .|+
T Consensus       104 rf~  106 (405)
T KOG1273|consen  104 RFD  106 (405)
T ss_pred             Ecc
Confidence            763

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.63  E-value=1.7e-13  Score=88.69  Aligned_cols=118  Identities=14%  Similarity=0.156  Sum_probs=88.0

Q ss_pred             EEEecCCcEEEE-eCCCCeEEEEEccCCceeeEEEecC-------CCeEEEEECCCCCEEEE-ecCCCcEEEEEeCCceE
Q psy11518         18 RSVAATSKLAAS-SGADETVVLYDMVKRKQSGALMQHE-------GTITCLKFTPEGSHLIS-CSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        18 ~~~~~~~~~l~~-~~~~~~v~i~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~-~~~d~~i~~~d~~~~~~   88 (139)
                      ..+.++++.+++ +..++.|.+||+++++.+..+..+.       .....++|+|++++++. ...++.+.+||.++++.
T Consensus       162 ~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~  241 (300)
T TIGR03866       162 AEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV  241 (300)
T ss_pred             EEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence            344558887754 4568999999999987766654321       12346889999998544 45566899999998887


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEE-cCCCeEEEEEcCCCceeEEEec
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSV-GKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ...+...  . .+.+++|+|++++|+++ +.++.|.+||+++++.+..+.+
T Consensus       242 ~~~~~~~--~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~  289 (300)
T TIGR03866       242 LDYLLVG--Q-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKV  289 (300)
T ss_pred             EEEEEeC--C-CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEc
Confidence            6655222  2 38899999999998876 4689999999999998877654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG3881|consensus

Probab=99.63  E-value=9.1e-15  Score=94.60  Aligned_cols=120  Identities=19%  Similarity=0.240  Sum_probs=103.9

Q ss_pred             eeEEEEec-C---CcEEEEeCCCCeEEEEEccCC-ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         15 ASVRSVAA-T---SKLAASSGADETVVLYDMVKR-KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        15 ~~v~~~~~-~---~~~l~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ..++++.| .   ...|++++.-+.+++||+..+ +++..+..-+.+++++...|.++.+++|...+.+..||++.+...
T Consensus       203 vW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~  282 (412)
T KOG3881|consen  203 VWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL  282 (412)
T ss_pred             eeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence            34566667 2   568999999999999999876 677888888889999999999999999999999999999999988


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ........++ ++++..+|..++++++|-|+.+||+|+.+.+++..
T Consensus       283 g~~~kg~tGs-irsih~hp~~~~las~GLDRyvRIhD~ktrkll~k  327 (412)
T KOG3881|consen  283 GCGLKGITGS-IRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHK  327 (412)
T ss_pred             ccccCCccCC-cceEEEcCCCceEEeeccceeEEEeecccchhhhh
Confidence            8753555555 99999999999999999999999999999776543

>KOG1310|consensus

Probab=99.62  E-value=3.8e-15  Score=100.40  Aligned_cols=120  Identities=23%  Similarity=0.386  Sum_probs=98.2

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE-ecCCCeEEEEECC--CCCEEEEecCCCcEEEEEe
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTP--EGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~   83 (139)
                      ...||.+-|.|+.|  +|.+|++|+.|..+.|||+...++++.+. +|.+.|.++.|-|  +.+.+++|..|..|+++|+
T Consensus        45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl  124 (758)
T KOG1310|consen   45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDL  124 (758)
T ss_pred             hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEec
Confidence            34589999999999  99999999999999999998888877654 8999999999999  4568899999999999999


Q ss_pred             CCce----------EEEEEEeCCCCcceeEEEEccCC-cEEEEEcCCCeEEEEEcCCC
Q psy11518         84 GSWQ----------LEKLFKKAHKGTAVNHISIHPSG-KLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        84 ~~~~----------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ...+          ....+ ..|... |-.++-.|++ ..+.++++||.++-+|++..
T Consensus       125 ~~~~~~~~d~~~~~~~~~~-~cht~r-VKria~~p~~PhtfwsasEDGtirQyDiREp  180 (758)
T KOG1310|consen  125 DSSKEGGMDHGMEETTRCW-SCHTDR-VKRIATAPNGPHTFWSASEDGTIRQYDIREP  180 (758)
T ss_pred             ccccccccccCccchhhhh-hhhhhh-hhheecCCCCCceEEEecCCcceeeecccCC
Confidence            7421          11222 223333 7778888888 68899999999999999874

>KOG2096|consensus

Probab=99.62  E-value=1.6e-14  Score=91.85  Aligned_cols=115  Identities=16%  Similarity=0.276  Sum_probs=92.7

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe---CCce
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV---GSWQ   87 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~---~~~~   87 (139)
                      |...+..+--  ++.++++++.|..|.+|+++ |+.+..+......-+..+.+|+|+++++++.-..+++|.+   +.|.
T Consensus       186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~  264 (420)
T KOG2096|consen  186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT  264 (420)
T ss_pred             cccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcc
Confidence            4444555443  78899999999999999987 8888888877777778899999999999999999999986   2222


Q ss_pred             ---EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         88 ---LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        88 ---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                         ....+....+...|..++|+++...+++.+-||.+++||+.
T Consensus       265 fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  265 FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence               23344444444559999999999999999999999999975

>KOG0290|consensus

Probab=99.62  E-value=2.9e-14  Score=89.57  Aligned_cols=119  Identities=20%  Similarity=0.328  Sum_probs=92.7

Q ss_pred             cceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCce---eeEEEecCCCeEEEEECCCC-CEEEEecCCCcEEEEEeC
Q psy11518         12 SHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQ---SGALMQHEGTITCLKFTPEG-SHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        12 ~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~   84 (139)
                      .+..+++++.|   +.+++.+.+-|.+..|||++++..   ...+-.|..+|..++|...+ ..+|+.+.||.+++||++
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR  227 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR  227 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence            35567888888   788999999999999999998733   45577899999999999854 578999999999999996


Q ss_pred             CceEEEEE----------------------------------------------EeCCCCcceeEEEEccC-CcEEEEEc
Q psy11518         85 SWQLEKLF----------------------------------------------KKAHKGTAVNHISIHPS-GKLALSVG  117 (139)
Q Consensus        85 ~~~~~~~~----------------------------------------------~~~~~~~~v~~~~~~~~-~~~l~~~~  117 (139)
                      ..+....+                                              ....+...|..++|.|. ...|.+++
T Consensus       228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG  307 (364)
T KOG0290|consen  228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG  307 (364)
T ss_pred             ccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC
Confidence            42211000                                              01123334999999995 45899999


Q ss_pred             CCCeEEEEEcCCC
Q psy11518        118 KDKTLRTWNLVKG  130 (139)
Q Consensus       118 ~d~~i~i~d~~~~  130 (139)
                      +|.++.+||+.+-
T Consensus       308 DD~qaliWDl~q~  320 (364)
T KOG0290|consen  308 DDCQALIWDLQQM  320 (364)
T ss_pred             CcceEEEEecccc
Confidence            9999999999764

>KOG0639|consensus

Probab=99.62  E-value=1.6e-15  Score=101.31  Aligned_cols=122  Identities=16%  Similarity=0.323  Sum_probs=100.6

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE---
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL---   91 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~---   91 (139)
                      .+..++++|.+...++..||.|.|||+.+...+..|++|...+.|+..+++|..|-+|+-|.+++.||++++..+..   
T Consensus       512 CyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF  591 (705)
T KOG0639|consen  512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF  591 (705)
T ss_pred             hhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh
Confidence            34556667999999999999999999999999999999999999999999999999999999999999976432210   


Q ss_pred             -----------------------------------EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         92 -----------------------------------FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        92 -----------------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                                                         +....+..-|.++.|.+-|+++++.+.|+.+..|.+..|..+++.
T Consensus       592 ~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqs  671 (705)
T KOG0639|consen  592 SSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS  671 (705)
T ss_pred             hhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeec
Confidence                                               111112223889999999999999999999999998887766553

>KOG0642|consensus

Probab=99.61  E-value=1.1e-14  Score=97.81  Aligned_cols=119  Identities=22%  Similarity=0.343  Sum_probs=96.0

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccC--------CceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVK--------RKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      |...+..+.+  ....|++++.|+.+.+|++..        -+++.+|.+|.++|.|+++.+++..+.+|+-||.|+.|+
T Consensus       293 ~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~  372 (577)
T KOG0642|consen  293 HDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWN  372 (577)
T ss_pred             chhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeec
Confidence            4444444444  777899999999999999832        267889999999999999999999999999999999996


Q ss_pred             eCCce---------EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         83 VGSWQ---------LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        83 ~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +....         .+...-.+|.+. ++.+++|+....|++++.||+++.|+.....+
T Consensus       373 ~p~n~dp~ds~dp~vl~~~l~Ghtda-vw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~  430 (577)
T KOG0642|consen  373 LPPNQDPDDSYDPSVLSGTLLGHTDA-VWLLALSSTKDRLLSCSSDGTVRLWEPTEESP  430 (577)
T ss_pred             cCCCCCcccccCcchhccceeccccc-eeeeeecccccceeeecCCceEEeeccCCcCc
Confidence            64221         222222566766 99999999999999999999999999876655

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.61  E-value=1.5e-13  Score=88.89  Aligned_cols=109  Identities=14%  Similarity=0.220  Sum_probs=86.8

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEE-EEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      +..+++++.|+.+.+||+.+++.+..+..+.. +..++|+|+++.+ ++++.++.|.+||..+++....+. .+ .. +.
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~-~~   76 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-SG-PD-PE   76 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc-CC-CC-cc
Confidence            35788999999999999999988888876544 5789999999876 567788999999999888766652 22 22 56


Q ss_pred             EEEEccCCcEEEEE-cCCCeEEEEEcCCCceeEEE
Q psy11518        103 HISIHPSGKLALSV-GKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       103 ~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .++|+|+++.++++ +.++.+.+||+++++.+..+
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~  111 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI  111 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence            78999999977655 56899999999988766554

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1009|consensus

Probab=99.61  E-value=1.8e-14  Score=93.65  Aligned_cols=125  Identities=22%  Similarity=0.269  Sum_probs=105.8

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEcc--------C--------CceeeEEEecCCCeEEEEECCCCCEEEEe
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMV--------K--------RKQSGALMQHEGTITCLKFTPEGSHLISC   72 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~--------~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   72 (139)
                      ..|...++++.|  +|+++++|+.+|.|.+|-..        +        ......+.+|...+..++|+|++++++++
T Consensus        62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~  141 (434)
T KOG1009|consen   62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG  141 (434)
T ss_pred             cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence            357778888887  88899999999999999876        2        11234566899999999999999999999


Q ss_pred             cCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         73 SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        73 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +.|..+++||+..|.....+ ..|... +..++|.|-.+++++-+.|+..+.+++...+.+..+.
T Consensus       142 s~dns~~l~Dv~~G~l~~~~-~dh~~y-vqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~  204 (434)
T KOG1009|consen  142 SVDNSVRLWDVHAGQLLAIL-DDHEHY-VQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHG  204 (434)
T ss_pred             eccceEEEEEeccceeEeec-cccccc-cceeecchhhhhhhhhccCcccceeeeeeeeeeeeee
Confidence            99999999999999998888 566655 9999999999999999999988888887766665543

>KOG0321|consensus

Probab=99.61  E-value=9.9e-15  Score=99.51  Aligned_cols=123  Identities=22%  Similarity=0.383  Sum_probs=92.8

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeE--EEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCC
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGA--LMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ..|...|+++.|  ....|++++.|.++++||+++.+....  +.+|...|.+++|.| +...|++|+.||.+.+||++-
T Consensus        97 ~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~  176 (720)
T KOG0321|consen   97 LAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC  176 (720)
T ss_pred             ccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence            468889999998  556789999999999999999988766  889999999999999 566789999999999999864


Q ss_pred             ceEE--------------------EEEE------eCCCCcceeE---EEEccCCcEEEEEcC-CCeEEEEEcCCCceeE
Q psy11518         86 WQLE--------------------KLFK------KAHKGTAVNH---ISIHPSGKLALSVGK-DKTLRTWNLVKGRSAY  134 (139)
Q Consensus        86 ~~~~--------------------~~~~------~~~~~~~v~~---~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~  134 (139)
                      ....                    ....      ..+. ..+.+   +-+..|...|++++. |+.|++||++......
T Consensus       177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s-~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~  254 (720)
T KOG0321|consen  177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAAS-NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAY  254 (720)
T ss_pred             cchhhHHHHhhhhhccccCCCCCCchhhcccccccccc-CceeeeeEEEEEeccceeeeccCCCcceEEEeeccccccc
Confidence            3200                    0000      0011 11333   344458888998887 9999999999765443

>KOG1408|consensus

Probab=99.61  E-value=1.9e-14  Score=99.75  Aligned_cols=111  Identities=23%  Similarity=0.312  Sum_probs=99.7

Q ss_pred             EEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEe---cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         17 VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ---HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      -+++.+..+++++++.|..|+||++++++....|++   |++....+...|.|.|+++.+.|.++.++|..++++...+ 
T Consensus       601 Dm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m-  679 (1080)
T KOG1408|consen  601 DMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM-  679 (1080)
T ss_pred             EeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh-
Confidence            344556889999999999999999999999999875   6677888999999999999999999999999999998887 


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ..|... |+.+.|.+|.+.|++.+.||.|.||.+..
T Consensus       680 ~GHsE~-VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  680 TGHSEA-VTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cCcchh-eeeeeecccchhheeecCCceEEEEECch
Confidence            666666 99999999999999999999999998754

>KOG1445|consensus

Probab=99.60  E-value=3e-15  Score=102.56  Aligned_cols=118  Identities=20%  Similarity=0.357  Sum_probs=96.4

Q ss_pred             cceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         12 SHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        12 ~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      .|...|..+.|   ..+.|++++.|-+|++||+.+++....+.+|...|..++|+|+|+.+|+.++||.|++|..+.++.
T Consensus       675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~  754 (1012)
T KOG1445|consen  675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ  754 (1012)
T ss_pred             cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence            56777788877   678899999999999999999999999999999999999999999999999999999999887654


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCC----CeEEEEEcCC
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKD----KTLRTWNLVK  129 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~  129 (139)
                      .-.-...-.+.+-..+.|.-+|+++++.+.|    ++|.+||..+
T Consensus       755 pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~  799 (1012)
T KOG1445|consen  755 PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQT  799 (1012)
T ss_pred             ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhh
Confidence            3222222223334667888899998888754    6788888765

>KOG0270|consensus

Probab=99.59  E-value=6.8e-15  Score=96.45  Aligned_cols=105  Identities=18%  Similarity=0.237  Sum_probs=85.1

Q ss_pred             CCcEEEEeCCCCeEEEEEccCC---ceeeE------------------EEecCCCeEEEEECCC-CCEEEEecCCCcEEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKR---KQSGA------------------LMQHEGTITCLKFTPE-GSHLISCSDDGSIAI   80 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~---~~~~~------------------~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~   80 (139)
                      .|+++|.|+.+..|.|||+.-.   .+..+                  -.+|+..|..++|+.. .+.||+|+.|.+|++
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l  270 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL  270 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence            4779999999999999998521   11111                  1257777888888874 567899999999999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCC
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ||+.++++...+  .+++.+|.++.|+| ....|++|+.|+++.+.|.|.
T Consensus       271 WD~~~g~p~~s~--~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~  318 (463)
T KOG0270|consen  271 WDVDTGKPKSSI--THHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRD  318 (463)
T ss_pred             EEcCCCCcceeh--hhcCCceeEEEecCCCceEEEeccccceEEeeeccC
Confidence            999999999888  35555699999999 456899999999999999994

>KOG0641|consensus

Probab=99.59  E-value=2.1e-13  Score=83.35  Aligned_cols=112  Identities=27%  Similarity=0.422  Sum_probs=95.2

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc---eEEEEE
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW---QLEKLF   92 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---~~~~~~   92 (139)
                      ...++.|.|++|++|-.|.+..+||+..+++++.+..|...|.|+.|+|...++++++.|..|++-|++..   ++....
T Consensus       235 aav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~v  314 (350)
T KOG0641|consen  235 AAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMV  314 (350)
T ss_pred             EEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEE
Confidence            34455579999999999999999999999999999999999999999999999999999999999998742   222333


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      ...|+.. +..+.|+|..--+++.+.|.++.+|-+.
T Consensus       315 v~ehkdk-~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  315 VAEHKDK-AIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEeccCc-eEEEEecCccceeeeccCcceEEEeccC
Confidence            2345554 7778999999999999999999999764

>KOG1007|consensus

Probab=99.59  E-value=2.4e-14  Score=89.88  Aligned_cols=115  Identities=18%  Similarity=0.411  Sum_probs=89.4

Q ss_pred             eeeEEEEec--CCcEEEEeCCCCeEEEEEccCCce-eeEEE-----ecCCCeEEEEECC--CCCEEEEecCCCcEEEEEe
Q psy11518         14 TASVRSVAA--TSKLAASSGADETVVLYDMVKRKQ-SGALM-----QHEGTITCLKFTP--EGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~-~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~   83 (139)
                      -+.+.|+.|  ++..+++-. +..|.+|++..+.. ...+.     +++...++-+|+|  +++.+++.+ |+++..||+
T Consensus       123 vg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~  200 (370)
T KOG1007|consen  123 VGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDL  200 (370)
T ss_pred             hCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEc
Confidence            346667666  777777655 78899999987755 33332     3566778889999  677777664 779999999


Q ss_pred             CCceEEEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCc
Q psy11518         84 GSWQLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ++......+...|... +..+.|+|+.+ +|+++++||.|+|||.|.-+
T Consensus       201 RT~~~~~sI~dAHgq~-vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk  248 (370)
T KOG1007|consen  201 RTMKKNNSIEDAHGQR-VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK  248 (370)
T ss_pred             cchhhhcchhhhhcce-eeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence            9988888886666554 99999999887 67889999999999998754

>KOG0644|consensus

Probab=99.58  E-value=7.7e-16  Score=107.76  Aligned_cols=111  Identities=23%  Similarity=0.375  Sum_probs=102.9

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      +|...|.|..+  .|.++++|+.|..++||..+++.++..+.+|.+.++.++.+.+..++++++.|..|++|.++.+.++
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pv  267 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPV  267 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchH
Confidence            68888999888  7999999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      ..+ ..|.+. |++++|+|-.    +.+.||++++||.+
T Consensus       268 svL-rghtga-vtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  268 SVL-RGHTGA-VTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             HHH-hccccc-eeeeccCccc----cCCCCCceEecccc
Confidence            888 777877 9999999965    67889999999998

>KOG1188|consensus

Probab=99.58  E-value=4.7e-14  Score=90.09  Aligned_cols=118  Identities=22%  Similarity=0.340  Sum_probs=89.6

Q ss_pred             cceeeEEEEec----CCcEEEEeCCCCeEEEEEccCCceeeEE--EecC-CCeEEEEECCCCCEEEEecC----CCcEEE
Q psy11518         12 SHTASVRSVAA----TSKLAASSGADETVVLYDMVKRKQSGAL--MQHE-GTITCLKFTPEGSHLISCSD----DGSIAI   80 (139)
Q Consensus        12 ~~~~~v~~~~~----~~~~l~~~~~~~~v~i~~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~----d~~i~~   80 (139)
                      +++..+..+.|    ....+.+++.||.|++||+++......+  ..+. .+..|++.+-..+.+++|..    +-.+.+
T Consensus        68 ~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~l  147 (376)
T KOG1188|consen   68 GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVL  147 (376)
T ss_pred             CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEE
Confidence            45555666666    3567899999999999999887554443  3343 35566666657778887753    556899


Q ss_pred             EEeCCceE-EEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCC
Q psy11518         81 FRVGSWQL-EKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        81 ~d~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ||++..+. +..+...|... |++++|+| +.++|++|+.||.+.+||+...
T Consensus       148 wDvR~~qq~l~~~~eSH~DD-VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  148 WDVRSEQQLLRQLNESHNDD-VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             EEeccccchhhhhhhhccCc-ceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            99998776 77776777777 99999999 4569999999999999999754

>KOG2919|consensus

Probab=99.57  E-value=5.4e-14  Score=89.52  Aligned_cols=115  Identities=23%  Similarity=0.330  Sum_probs=91.8

Q ss_pred             eeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC-CCcEEEEEeCCce-E
Q psy11518         14 TASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD-DGSIAIFRVGSWQ-L   88 (139)
Q Consensus        14 ~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~-~   88 (139)
                      .+-+.|+++   +...++.|+...++-||.-...+++..+-+|.+.|+.++|.++|+.|.+|.+ +..|..||++... +
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p  286 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP  286 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch
Confidence            344455554   7779999999999999999899999999999999999999999999998877 6789999998754 3


Q ss_pred             EEEEEeCCCCcc--eeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         89 EKLFKKAHKGTA--VNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        89 ~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      +..+ ..|.+..  -.-....|.+++|++|+.||.|++||+++
T Consensus       287 v~~L-~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  287 VYAL-ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             hhhh-hhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            3444 2222211  22245668999999999999999999987

>KOG4227|consensus

Probab=99.56  E-value=1.7e-13  Score=89.60  Aligned_cols=120  Identities=19%  Similarity=0.263  Sum_probs=103.0

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccC------CceeeEEE-ecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVK------RKQSGALM-QHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      +|.+.|.++.|  ++++|++|+.|..+++|+++.      .+++.... .|.+.|.|+.|....+.+.+|..+++|..-|
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD  133 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD  133 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence            68888889888  899999999999999999853      35554433 3558999999999999999999999999999


Q ss_pred             eCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         83 VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      +.+.+.+..+......+.|+.+..+|..+.+++.+.++.|.+||.+..+
T Consensus       134 iEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  134 IETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             cccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            9999888887555544559999999999999999999999999998765

>KOG1408|consensus

Probab=99.55  E-value=5.7e-14  Score=97.48  Aligned_cols=123  Identities=21%  Similarity=0.357  Sum_probs=98.9

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC---CCCEEEEecCCCcEEEEEeCCceE---
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP---EGSHLISCSDDGSIAIFRVGSWQL---   88 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~~~~---   88 (139)
                      ....++++++++|++|...|.+++|++...+.......|++.|.|+.|+.   ..++||++++|..|++||....-.   
T Consensus       462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~q  541 (1080)
T KOG1408|consen  462 FRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQ  541 (1080)
T ss_pred             eEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhh
Confidence            35667778999999999999999999999988888999999999999985   457889999999999999742100   


Q ss_pred             --------------------EEEEE---------------------eCC----CCcceeEEEEccCCcEEEEEcCCCeEE
Q psy11518         89 --------------------EKLFK---------------------KAH----KGTAVNHISIHPSGKLALSVGKDKTLR  123 (139)
Q Consensus        89 --------------------~~~~~---------------------~~~----~~~~v~~~~~~~~~~~l~~~~~d~~i~  123 (139)
                                          ...+.                     ..+    ....+++++..|+.+++++++.|+.|+
T Consensus       542 tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir  621 (1080)
T KOG1408|consen  542 TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR  621 (1080)
T ss_pred             hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence                                00000                     000    111378999999999999999999999


Q ss_pred             EEEcCCCceeEEEe
Q psy11518        124 TWNLVKGRSAYITN  137 (139)
Q Consensus       124 i~d~~~~~~~~~~~  137 (139)
                      |||+.+++.+..++
T Consensus       622 if~i~sgKq~k~FK  635 (1080)
T KOG1408|consen  622 IFDIESGKQVKSFK  635 (1080)
T ss_pred             EEeccccceeeeec
Confidence            99999999988764

>KOG0642|consensus

Probab=99.54  E-value=3.7e-13  Score=90.71  Aligned_cols=81  Identities=22%  Similarity=0.412  Sum_probs=67.6

Q ss_pred             eEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccC------C----ceeeEEEecCCCeEEEEECCCCCEEEE
Q psy11518          4 LTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVK------R----KQSGALMQHEGTITCLKFTPEGSHLIS   71 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~------~----~~~~~~~~~~~~v~~~~~~~~~~~l~~   71 (139)
                      +...+.+.+|.++|.|+..  +++.+++|+.||.|+.|++..      .    .....+.+|...|..+++++....|++
T Consensus       334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls  413 (577)
T KOG0642|consen  334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS  413 (577)
T ss_pred             eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence            3455666789999999886  999999999999999996532      1    223567899999999999998889999


Q ss_pred             ecCCCcEEEEEeC
Q psy11518         72 CSDDGSIAIFRVG   84 (139)
Q Consensus        72 ~~~d~~i~~~d~~   84 (139)
                      ++.||++++|+..
T Consensus       414 cs~DgTvr~w~~~  426 (577)
T KOG0642|consen  414 CSSDGTVRLWEPT  426 (577)
T ss_pred             ecCCceEEeeccC
Confidence            9999999999763

>KOG4328|consensus

Probab=99.54  E-value=1e-13  Score=91.46  Aligned_cols=121  Identities=22%  Similarity=0.281  Sum_probs=92.3

Q ss_pred             EEEeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCce-------------------------------------
Q psy11518          7 TFVTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQ-------------------------------------   46 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~-------------------------------------   46 (139)
                      .+.+.+|..+|.++.|   +...+++.+.||+|+.-|++....                                     
T Consensus       227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i  306 (498)
T KOG4328|consen  227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI  306 (498)
T ss_pred             eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence            3455678888888887   777889999999999988864210                                     


Q ss_pred             --------eeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCceEEE---EEEeCCCCcceeEEEEccCCcEEE
Q psy11518         47 --------SGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQLEK---LFKKAHKGTAVNHISIHPSGKLAL  114 (139)
Q Consensus        47 --------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~  114 (139)
                              ...+..|...|..++++| ...++||++.|+++++||++......   .....|... |.+..|+|.+-.|+
T Consensus       307 D~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs-V~sAyFSPs~gtl~  385 (498)
T KOG4328|consen  307 DLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS-VNSAYFSPSGGTLL  385 (498)
T ss_pred             EeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce-eeeeEEcCCCCceE
Confidence                    001123667899999999 45678999999999999998754333   222455555 99999999888899


Q ss_pred             EEcCCCeEEEEEcC
Q psy11518        115 SVGKDKTLRTWNLV  128 (139)
Q Consensus       115 ~~~~d~~i~i~d~~  128 (139)
                      +.+.|..|+|||..
T Consensus       386 TT~~D~~IRv~dss  399 (498)
T KOG4328|consen  386 TTCQDNEIRVFDSS  399 (498)
T ss_pred             eeccCCceEEeecc
Confidence            99999999999983

>KOG1523|consensus

Probab=99.54  E-value=1.6e-13  Score=87.09  Aligned_cols=125  Identities=18%  Similarity=0.249  Sum_probs=96.6

Q ss_pred             eeeEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEccCC---ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcE
Q psy11518          2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKR---KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSI   78 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (139)
                      |+..+++..+.......++++..+.|++++.|..-.+|....+   ++...+..+....+++.|+|.++.+|+|+....|
T Consensus        45 w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~i  124 (361)
T KOG1523|consen   45 WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLI  124 (361)
T ss_pred             ceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEE
Confidence            4556666644434444444458889999999999999998433   5666777788899999999999999999999999


Q ss_pred             EEEEeCCceE---EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518         79 AIFRVGSWQL---EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        79 ~~~d~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      .+|=......   ...+..+.+.. |.+++|+|++-+++.|+.|+..++|..
T Consensus       125 sVcy~E~ENdWWVsKhikkPirSt-v~sldWhpnnVLlaaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  125 SVCYYEQENDWWVSKHIKKPIRST-VTSLDWHPNNVLLAAGSTDGKCRVFSA  175 (361)
T ss_pred             EEEEEecccceehhhhhCCccccc-eeeeeccCCcceecccccCcceeEEEE
Confidence            9887654332   22343444554 999999999999999999999999964

>KOG2048|consensus

Probab=99.53  E-value=7.8e-13  Score=90.81  Aligned_cols=122  Identities=18%  Similarity=0.217  Sum_probs=93.1

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccCCceee--EEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVKRKQSG--ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      ..-+++.+.+..++.|+.||.+..++...++...  .+...++.+.+++|+|++..+++|+.||.|++||...+......
T Consensus       113 IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~  192 (691)
T KOG2048|consen  113 IWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHII  192 (691)
T ss_pred             eeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEe
Confidence            3444555688899999999988887777765543  35556789999999999999999999999999999988765522


Q ss_pred             -----EeCC-CCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         93 -----KKAH-KGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        93 -----~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                           .... ...-|+++.|- ....|++|...|.|.+||...+..++.+.
T Consensus       193 ~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~  242 (691)
T KOG2048|consen  193 TMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHS  242 (691)
T ss_pred             eecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhh
Confidence                 1111 22226777777 45579999999999999999998876653

>KOG2106|consensus

Probab=99.53  E-value=8.4e-13  Score=88.41  Aligned_cols=117  Identities=19%  Similarity=0.331  Sum_probs=93.1

Q ss_pred             eeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE---
Q psy11518         15 ASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK---   90 (139)
Q Consensus        15 ~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---   90 (139)
                      ..|.|+.| .+.-+++|..+|.|.||+..+.+..+....|.+.|.++....+|.++. |++|+.|..||- +-+.+.   
T Consensus       247 k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~-~y~k~r~~e  324 (626)
T KOG2106|consen  247 KFVLCVTFLENGDVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKIILWDD-NYRKLRETE  324 (626)
T ss_pred             eEEEEEEEcCCCCEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCccceEEeccc-ccccccccc
Confidence            78999999 667889999999999999988888777779999999999999998776 999999999983 111000   


Q ss_pred             -------------------------------------EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         91 -------------------------------------LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        91 -------------------------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                                                           .....|.. ....++.+|+..++++++.|+.+++|+  ..+++
T Consensus       325 lPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~  401 (626)
T KOG2106|consen  325 LPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLE  401 (626)
T ss_pred             CchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCcee
Confidence                                                 00122333 378899999999999999999999999  55555


Q ss_pred             EEE
Q psy11518        134 YIT  136 (139)
Q Consensus       134 ~~~  136 (139)
                      ...
T Consensus       402 wt~  404 (626)
T KOG2106|consen  402 WTK  404 (626)
T ss_pred             EEE
Confidence            544

>KOG2055|consensus

Probab=99.53  E-value=6.4e-13  Score=87.91  Aligned_cols=110  Identities=12%  Similarity=0.196  Sum_probs=95.3

Q ss_pred             EEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCC
Q psy11518         18 RSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHK   97 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~   97 (139)
                      ..+++++++|+..+..|.|.+....+++.+..++. .+.|..+.|+.+++.+..++.+|.|.+||++...++..+.....
T Consensus       309 FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~  387 (514)
T KOG2055|consen  309 FEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI-EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS  387 (514)
T ss_pred             eEecCCCCeEEEcccCceEEeehhhhhhhhheeee-ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc
Confidence            34556999999999999999999999999988874 57889999999999999999999999999999988888854444


Q ss_pred             CcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         98 GTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        98 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      -. -+++|.++++.++++|+..|.|.|||..+
T Consensus       388 v~-gts~~~S~ng~ylA~GS~~GiVNIYd~~s  418 (514)
T KOG2055|consen  388 VH-GTSLCISLNGSYLATGSDSGIVNIYDGNS  418 (514)
T ss_pred             cc-eeeeeecCCCceEEeccCcceEEEeccch
Confidence            33 56788889999999999999999999653

>KOG0307|consensus

Probab=99.52  E-value=1e-14  Score=104.52  Aligned_cols=122  Identities=21%  Similarity=0.249  Sum_probs=93.9

Q ss_pred             eeEEEEec--CCc----EEEEeCCCCeEEEEEccCC------ceeeEEEecCCCeEEEEECCC-CCEEEEecCCCcEEEE
Q psy11518         15 ASVRSVAA--TSK----LAASSGADETVVLYDMVKR------KQSGALMQHEGTITCLKFTPE-GSHLISCSDDGSIAIF   81 (139)
Q Consensus        15 ~~v~~~~~--~~~----~l~~~~~~~~v~i~~~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~   81 (139)
                      .....+.|  .+.    .|+.|.+||.|.+||...-      ..+.++..|.+.|..+.|++. ++.||+|+.||.|.+|
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            34556666  222    5888999999999998652      345667789999999999994 5699999999999999


Q ss_pred             EeCCceEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         82 RVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      |+.+.+.............|.+++|+. ....|++++.+|++.|||++..+++..+
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~l  200 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKL  200 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccc
Confidence            998866555543222333499999997 4457788889999999999998776544

>KOG4378|consensus

Probab=99.52  E-value=4.3e-13  Score=89.77  Aligned_cols=125  Identities=20%  Similarity=0.305  Sum_probs=101.7

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEec-CCCeEEEEECCCCC-EEEEecCCCcEEEEEeCCc
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQH-EGTITCLKFTPEGS-HLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~   86 (139)
                      .+|...|+++.+  ...+|++++..|.|.+..+.++....+|... ...|..+.|+|..+ +|.+++.+|.|.+||+...
T Consensus       118 kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~  197 (673)
T KOG4378|consen  118 KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM  197 (673)
T ss_pred             cCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCC
Confidence            468889999987  7889999999999999999998877777654 34455889999655 4568899999999999988


Q ss_pred             eEEEEEEeCCCCcceeEEEEccC-CcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPS-GKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .++..+...|.. |...+||+|. ..++++.+.|.+|.+||.+..+....+
T Consensus       198 sp~~~~~~~HsA-P~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l  247 (673)
T KOG4378|consen  198 SPIFHASEAHSA-PCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL  247 (673)
T ss_pred             CcccchhhhccC-CcCcceecCCccceEEEecccceEEEeeccccccccee
Confidence            888877445554 4899999994 558889999999999999976654443

>KOG4378|consensus

Probab=99.52  E-value=4.6e-13  Score=89.61  Aligned_cols=107  Identities=15%  Similarity=0.220  Sum_probs=90.5

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEE-EecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcc
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGAL-MQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA  100 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  100 (139)
                      ...+|.+++.+|.|.+||+....++..+ ..|..+...++|+| +..++++.+.|..|.+||++.......+...+   |
T Consensus       176 kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~---P  252 (673)
T KOG4378|consen  176 KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSH---P  252 (673)
T ss_pred             cceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecC---C
Confidence            5667889999999999999887777654 46889999999999 56678899999999999999877766663333   3


Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      ...++|.++|.+|+.|...|.|..||+|..+.
T Consensus       253 lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~  284 (673)
T KOG4378|consen  253 LSTVAFSECGTYLCAGNSKGELIAYDMRSTKA  284 (673)
T ss_pred             cceeeecCCceEEEeecCCceEEEEecccCCC
Confidence            88999999999999999999999999997543

>KOG2106|consensus

Probab=99.51  E-value=4.8e-12  Score=84.88  Aligned_cols=106  Identities=16%  Similarity=0.275  Sum_probs=82.1

Q ss_pred             cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce-EEEEEEeCCCCcc
Q psy11518         22 ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ-LEKLFKKAHKGTA  100 (139)
Q Consensus        22 ~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~  100 (139)
                      |.| .++.|...|...+.|.++...+..-. ..+++++++|+|+|.+||.|+.|+.|.+|.+.... ..... ..+++.+
T Consensus       417 psg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~-~k~~gs~  493 (626)
T KOG2106|consen  417 PSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRV-GKCSGSP  493 (626)
T ss_pred             Ccc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEe-eeecCce
Confidence            355 67777777777777776644433333 37899999999999999999999999999986644 44444 4445577


Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      |+.+.|++|++++.+-+.|-.|..|.....
T Consensus       494 ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~  523 (626)
T KOG2106|consen  494 ITHLDWSSDSQFLVSNSGDYEILYWKPSEC  523 (626)
T ss_pred             eEEeeecCCCceEEeccCceEEEEEccccC
Confidence            999999999999999999999999954433

>KOG1007|consensus

Probab=99.50  E-value=2.8e-13  Score=85.21  Aligned_cols=106  Identities=22%  Similarity=0.365  Sum_probs=84.1

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEE-EecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeCCceE-EEEEEeCCCCc
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGAL-MQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGSWQL-EKLFKKAHKGT   99 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~   99 (139)
                      +++.+++.+ |+++..||.++.+....+ ..|...|..+.|+|+.+ +|++|+.||.|++||.+..+. ...+ .+|...
T Consensus       183 dgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el-~~HsHW  260 (370)
T KOG1007|consen  183 DGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL-PGHSHW  260 (370)
T ss_pred             ccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc-CCCceE
Confidence            777777665 789999999987665444 46888899999999765 578999999999999987654 3444 455555


Q ss_pred             ceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCc
Q psy11518        100 AVNHISIHP-SGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus       100 ~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                       ++++.|+| ..+++++++.|..|.+|...+-.
T Consensus       261 -vW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  261 -VWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             -EEEEEecCccceEEEecCCCceeEEEeccccc
Confidence             99999999 55688899999999999876543

>KOG1523|consensus

Probab=99.49  E-value=2.2e-12  Score=82.05  Aligned_cols=116  Identities=12%  Similarity=0.194  Sum_probs=96.5

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC---ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe-CCc
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKR---KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV-GSW   86 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~-~~~   86 (139)
                      ...+|+|.+|  |+..++++..+..|.||.....   ++.++++.|...|+.+.|+|..+.+++++.|....+|.. ..+
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~   88 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG   88 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence            3466777777  8889999999999999998665   467889999999999999999999999999999999998 444


Q ss_pred             eEEEEEE-eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         87 QLEKLFK-KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        87 ~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      .....+. ..++.. ..++.|+|.++.+++|+..+.|.||-++.
T Consensus        89 ~WkptlvLlRiNrA-At~V~WsP~enkFAVgSgar~isVcy~E~  131 (361)
T KOG1523|consen   89 TWKPTLVLLRINRA-ATCVKWSPKENKFAVGSGARLISVCYYEQ  131 (361)
T ss_pred             eeccceeEEEeccc-eeeEeecCcCceEEeccCccEEEEEEEec
Confidence            4443332 233444 89999999999999999999999998764

>KOG1034|consensus

Probab=99.49  E-value=1.1e-13  Score=88.19  Aligned_cols=113  Identities=19%  Similarity=0.401  Sum_probs=87.8

Q ss_pred             cceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEE---EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         12 SHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGAL---MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        12 ~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +|...|+.+.+   +.+++++++.|.+|++|++++..++..+   .+|...|.++.|++++.++++++.|..|++|++..
T Consensus       133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~  212 (385)
T KOG1034|consen  133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNV  212 (385)
T ss_pred             ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecCh
Confidence            56667778876   6679999999999999999999998776   47999999999999999999999999999999973


Q ss_pred             ceEEEEE---------------------------EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518         86 WQLEKLF---------------------------KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        86 ~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      .+....+                           ...|+. .|.|+.|-  |.++++=+.++.|..|..
T Consensus       213 ~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrn-yVDCvrw~--gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  213 KEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRN-YVDCVRWF--GDFILSKSCENAIVCWKP  278 (385)
T ss_pred             hHHhhhhhhhcccCCCCccCcCCccccccccccccccccc-hHHHHHHH--hhheeecccCceEEEEec
Confidence            2211110                           011122 24455554  578888888999999987

>KOG1188|consensus

Probab=99.48  E-value=7.6e-13  Score=84.68  Aligned_cols=108  Identities=18%  Similarity=0.266  Sum_probs=89.1

Q ss_pred             cEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC--CCCEEEEecCCCcEEEEEeCCceEEEEEEeC-CCCcce
Q psy11518         25 KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP--EGSHLISCSDDGSIAIFRVGSWQLEKLFKKA-HKGTAV  101 (139)
Q Consensus        25 ~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~v  101 (139)
                      ..++++..+|+|++||..+++.+..++++...++.+.|..  .+..+.+++.||.|++||++.......+... +.+.+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688999999999999999999999999999999999976  4677889999999999999987765554333 333446


Q ss_pred             eEEEEccCCcEEEEEc----CCCeEEEEEcCCCce
Q psy11518        102 NHISIHPSGKLALSVG----KDKTLRTWNLVKGRS  132 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~  132 (139)
                      .+++.+-+++.+++|.    .+-.|.+||.|..+.
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq  155 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQ  155 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccc
Confidence            7777776888888886    478899999998776

>KOG1063|consensus

Probab=99.47  E-value=8.5e-13  Score=90.99  Aligned_cols=119  Identities=18%  Similarity=0.246  Sum_probs=93.7

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCce----eeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQ----SGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      ..+|.-.|+.+.|  |+++|++.+.|.++.+|.......    ....+.|..-|..++|+|++.+++|+++|..+++|..
T Consensus       568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            4478888888887  999999999999999999754311    2235679889999999999999999999999999999


Q ss_pred             CCc--eEEEEEEeCCCCcceeEEEEcc-----CCcEEEEEcCCCeEEEEEcC
Q psy11518         84 GSW--QLEKLFKKAHKGTAVNHISIHP-----SGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        84 ~~~--~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~i~d~~  128 (139)
                      ...  +.+..+.....+.+|+.+++.|     .+..+++|-+.|.|.+|...
T Consensus       648 ~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  648 PDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             cCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            887  4444432334444599999887     22267778899999999854

>KOG0974|consensus

Probab=99.46  E-value=6.9e-13  Score=94.60  Aligned_cols=118  Identities=22%  Similarity=0.405  Sum_probs=102.2

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceee-EEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSG-ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ...+|.+.+..+.+  +|.++++.+.|.++++|++++.+... ..-+|...+..+.|.|+  .+++++.|.+.++|+...
T Consensus       170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~  247 (967)
T KOG0974|consen  170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNG  247 (967)
T ss_pred             eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEeccc
Confidence            45689999999998  99999999999999999999987765 66789999999999988  899999999999997654


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      .++ ..+ ..|.+.-+..++..++..++++++.|+.+++||+...
T Consensus       248 ~~l-~~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  248 TQL-EVY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             cee-hhh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            433 355 4555555999999999999999999999999998654

>KOG1272|consensus

Probab=99.46  E-value=1.1e-13  Score=91.65  Aligned_cols=119  Identities=15%  Similarity=0.235  Sum_probs=101.4

Q ss_pred             eEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         16 SVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .+..+.|  .--+|++++..|.++.-|+.+|+.+..+..-.+.+..+.-+|-...+-+|...|+|.+|.....+++-.+ 
T Consensus       211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKi-  289 (545)
T KOG1272|consen  211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKI-  289 (545)
T ss_pred             chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHH-
Confidence            3444444  4446788899999999999999999888877778888888998888999999999999999888877776 


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..|.+. |.++++.++|+++++.|.|+.+.|||+++-..+.++
T Consensus       290 LcH~g~-V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  290 LCHRGP-VSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             HhcCCC-cceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            567766 999999999999999999999999999988766554

>KOG2445|consensus

Probab=99.46  E-value=1.5e-12  Score=82.53  Aligned_cols=113  Identities=21%  Similarity=0.346  Sum_probs=85.2

Q ss_pred             ceeeEEEEec-----CCcEEEEeCCC-----CeEEEEEccCC----ceeeEEEecCCCeEEEEECCC----CCEEEEecC
Q psy11518         13 HTASVRSVAA-----TSKLAASSGAD-----ETVVLYDMVKR----KQSGALMQHEGTITCLKFTPE----GSHLISCSD   74 (139)
Q Consensus        13 ~~~~v~~~~~-----~~~~l~~~~~~-----~~v~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~   74 (139)
                      +..++.|++|     ..++|++|+.+     +.+.||....+    ..+.++.+|..+|..++|.|+    ...+|+++.
T Consensus       168 ~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~k  247 (361)
T KOG2445|consen  168 NKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATK  247 (361)
T ss_pred             ccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeec
Confidence            4456777776     56678888765     47888987554    234567799999999999994    357899999


Q ss_pred             CCcEEEEEeCCc--------------------eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         75 DGSIAIFRVGSW--------------------QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        75 d~~i~~~d~~~~--------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      || |++|.+...                    +.+..+ ..|++ +|..+.|+-.|..|.+.|.||.|++|...
T Consensus       248 Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  248 DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            99 999998631                    011222 33444 49999999999999999999999999653

>KOG0321|consensus

Probab=99.45  E-value=5.6e-13  Score=91.19  Aligned_cols=108  Identities=22%  Similarity=0.325  Sum_probs=89.6

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCce------eeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE-EEeC
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQ------SGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL-FKKA   95 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~   95 (139)
                      ....|+.+.++|.|.++|......      +.....|...|..+.|.|....|++++.|.++++||+.+..+... +..+
T Consensus        63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~G  142 (720)
T KOG0321|consen   63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLG  142 (720)
T ss_pred             ccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecc
Confidence            566899999999999999765322      345567999999999999777899999999999999999887665 2256


Q ss_pred             CCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCc
Q psy11518         96 HKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  131 (139)
                      |.+. +.++||.|..+ .+++|+.||.+.|||++...
T Consensus       143 H~~S-vkS~cf~~~n~~vF~tGgRDg~illWD~R~n~  178 (720)
T KOG0321|consen  143 HTGS-VKSECFMPTNPAVFCTGGRDGEILLWDCRCNG  178 (720)
T ss_pred             cccc-cchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence            6666 99999999555 78899999999999998654

>KOG3914|consensus

Probab=99.45  E-value=1.5e-12  Score=84.67  Aligned_cols=104  Identities=22%  Similarity=0.310  Sum_probs=83.1

Q ss_pred             CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc
Q psy11518         32 ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK  111 (139)
Q Consensus        32 ~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  111 (139)
                      ....+.+|....+. .....+|-+.++.++++||++.++++++|..|++-.....-.+..+..+|+.- |..++.-++ +
T Consensus       130 D~~~~di~s~~~~~-~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eF-VS~isl~~~-~  206 (390)
T KOG3914|consen  130 DVYSFDILSADSGR-CEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEF-VSTISLTDN-Y  206 (390)
T ss_pred             CceeeeeecccccC-cchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhh-eeeeeeccC-c
Confidence            33444555544432 33445899999999999999999999999999999888877788886778777 999998754 4


Q ss_pred             EEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        112 LALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       112 ~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .|++++.|+++++||+++|+.+..+.+
T Consensus       207 ~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  207 LLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             eeeecCCCCcEEEEecccCCcccccch
Confidence            599999999999999999998866543

>KOG1272|consensus

Probab=99.44  E-value=1.8e-13  Score=90.69  Aligned_cols=109  Identities=13%  Similarity=0.291  Sum_probs=87.1

Q ss_pred             ceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE
Q psy11518         13 HTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        13 ~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      ....+++-.|-+..+-+|..+|+|.+|.+...+++..+..|.++|.++++.++|+|++|.+.|..+++||++....+..+
T Consensus       252 G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~  331 (545)
T KOG1272|consen  252 GRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY  331 (545)
T ss_pred             CccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence            34456666666668889999999999999999999888899999999999999999999999999999999988766666


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      ..++.   ...+++|..|  +++.+....+.||.
T Consensus       332 ~tp~~---a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  332 RTPHP---ASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             ecCCC---cccccccccc--ceeeecCCeeeeeh
Confidence            33222   6778887555  33444445788883

>KOG1963|consensus

Probab=99.44  E-value=5.2e-12  Score=88.82  Aligned_cols=112  Identities=17%  Similarity=0.331  Sum_probs=94.4

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccC----CceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVK----RKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      .+..++++++++++|..||.|.+|.-..    ......++-|...|.+++|+++|.+|.+|+.+|.+.+|.+.+++  +.
T Consensus       209 t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kq  286 (792)
T KOG1963|consen  209 TCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQ  286 (792)
T ss_pred             eeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cc
Confidence            4566667999999999999999997432    13345677899999999999999999999999999999999887  33


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      + .+.-+++|..+.++||+...+...+|++|++..+.+-
T Consensus       287 f-LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  287 F-LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             c-ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            3 4566677999999999999999999999999877544

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.44  E-value=2.5e-11  Score=74.45  Aligned_cols=97  Identities=19%  Similarity=0.298  Sum_probs=69.1

Q ss_pred             eEEEEEccC-CceeeEEEe-cCCCeEEEEECCCCCEEEE--ecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCC
Q psy11518         35 TVVLYDMVK-RKQSGALMQ-HEGTITCLKFTPEGSHLIS--CSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG  110 (139)
Q Consensus        35 ~v~i~~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  110 (139)
                      ...+|.++. ..+...+.- ..++|..++|+|+++.++.  |..+..+.+||++ ++.+..+.   .. ++..+.|+|+|
T Consensus        38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~---~~-~~n~i~wsP~G  112 (194)
T PF08662_consen   38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG---TQ-PRNTISWSPDG  112 (194)
T ss_pred             eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec---CC-CceEEEECCCC
Confidence            455555532 233444432 3457999999999998754  4456789999996 55555552   22 37889999999


Q ss_pred             cEEEEEcC---CCeEEEEEcCCCceeEEE
Q psy11518        111 KLALSVGK---DKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       111 ~~l~~~~~---d~~i~i~d~~~~~~~~~~  136 (139)
                      +++++++.   .|.+.+||.++.+.+...
T Consensus       113 ~~l~~~g~~n~~G~l~~wd~~~~~~i~~~  141 (194)
T PF08662_consen  113 RFLVLAGFGNLNGDLEFWDVRKKKKISTF  141 (194)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCEEeecc
Confidence            99999874   467999999988877654

>KOG0307|consensus

Probab=99.44  E-value=3.1e-13  Score=97.11  Aligned_cols=123  Identities=23%  Similarity=0.362  Sum_probs=97.5

Q ss_pred             ceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCC--CeEEEEECCCC-CEEEEecCCC---cEEEEEe
Q psy11518         13 HTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEG--TITCLKFTPEG-SHLISCSDDG---SIAIFRV   83 (139)
Q Consensus        13 ~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~-~~l~~~~~d~---~i~~~d~   83 (139)
                      ....|.+++|   ....|++++.+|...|||++..+++..+..+..  .++.++|+|+. ..+++++.|.   .|.+||+
T Consensus       160 ~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDl  239 (1049)
T KOG0307|consen  160 PPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDL  239 (1049)
T ss_pred             CcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecc
Confidence            3467889999   455799999999999999999988888876654  36789999964 4566665543   4899999


Q ss_pred             CCceE-EEEEEeCCCCcceeEEEEccCC-cEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         84 GSWQL-EKLFKKAHKGTAVNHISIHPSG-KLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        84 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +.... ...+ ..|..+ |.++.|++.+ .++++++.|++|.+||.++++.+..+.
T Consensus       240 R~assP~k~~-~~H~~G-ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p  293 (1049)
T KOG0307|consen  240 RFASSPLKIL-EGHQRG-ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP  293 (1049)
T ss_pred             cccCCchhhh-cccccc-eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC
Confidence            87553 4444 566666 9999999966 799999999999999999998887653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.43  E-value=6.4e-11  Score=78.92  Aligned_cols=120  Identities=33%  Similarity=0.516  Sum_probs=95.5

Q ss_pred             eecceeeEEEEec--CCcEEEEeCC-CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeCC
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGA-DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~-~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~   85 (139)
                      ...|...+..+.+  ++..++.++. ++.+++|+...++.+..+.+|...+.+++|+|++. .+++++.|+.+.+||...
T Consensus       151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~  230 (466)
T COG2319         151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST  230 (466)
T ss_pred             EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCC
Confidence            3355565665555  7778888885 99999999999888889999999999999999887 555659999999999887


Q ss_pred             ceEEE-EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         86 WQLEK-LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        86 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +.... .+ ..+... . ...|+|++..+++++.|+.+++|+++....
T Consensus       231 ~~~~~~~~-~~~~~~-~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         231 GKLLRSTL-SGHSDS-V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             CcEEeeec-CCCCcc-e-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence            77666 34 344433 3 238999998889999999999999987664

>KOG0322|consensus

Probab=99.43  E-value=4.8e-13  Score=83.16  Aligned_cols=67  Identities=18%  Similarity=0.374  Sum_probs=63.7

Q ss_pred             EEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518         17 VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      -..+.+|++.+|+++.|+.|++|..++.+++..++.|.+.|++++|+|+...+|.++.|+.|.+|++
T Consensus       256 gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  256 GVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            3567789999999999999999999999999999999999999999999999999999999999986

>KOG2055|consensus

Probab=99.43  E-value=9.9e-12  Score=82.42  Aligned_cols=126  Identities=16%  Similarity=0.235  Sum_probs=99.5

Q ss_pred             EeecceeeEEEEecCCc-EEEEeCCCCeEEEEEccCCcee--eEEEecC-CCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518          9 VTHSHTASVRSVAATSK-LAASSGADETVVLYDMVKRKQS--GALMQHE-GTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus         9 ~~~~~~~~v~~~~~~~~-~l~~~~~~~~v~i~~~~~~~~~--~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      .+...+....++.++|. .+++++....++.||+.+.+..  ....++. ..+.....+|++++++..+..|.|.+....
T Consensus       254 ~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhak  333 (514)
T KOG2055|consen  254 HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAK  333 (514)
T ss_pred             eeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhh
Confidence            33333444445556888 8899999999999999887543  3333443 345677789999999999999999999999


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +++.+..+...  +. +..++|+.+++.|++++.+|.|.+||+++.+.++.+.
T Consensus       334 T~eli~s~Kie--G~-v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~  383 (514)
T KOG2055|consen  334 TKELITSFKIE--GV-VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV  383 (514)
T ss_pred             hhhhhheeeec--cE-EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence            99988887433  33 9999999999999999999999999999998777653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.42  E-value=3.2e-11  Score=80.65  Aligned_cols=108  Identities=16%  Similarity=0.224  Sum_probs=83.4

Q ss_pred             EEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEE
Q psy11518         27 AASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISI  106 (139)
Q Consensus        27 l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~  106 (139)
                      +++-..++.|.+.|..+.+.+..+.........+.++|+++++.+.+.||.|.++|+.+.+....+.....   ..++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~---~~~i~~   85 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN---PRGIAV   85 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE---EEEEEE
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC---cceEEE
Confidence            35666789999999999999999886544444577999999999999999999999999999888843332   788999


Q ss_pred             ccCCcEEEEEc-CCCeEEEEEcCCCceeEEEe
Q psy11518        107 HPSGKLALSVG-KDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       107 ~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++||++++++. .++.+.++|.++.+++..+.
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            99999988776 68999999999999988765

...

>KOG1240|consensus

Probab=99.42  E-value=8.8e-12  Score=90.83  Aligned_cols=127  Identities=18%  Similarity=0.265  Sum_probs=93.0

Q ss_pred             ecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-------ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEE
Q psy11518         11 HSHTASVRSVAA---TSKLAASSGADETVVLYDMVKR-------KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAI   80 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   80 (139)
                      +.|...+..++.   ++.++++|+.||+|++|+....       +...++......+.++.+.+.+..+|.++.||.|.+
T Consensus      1045 ~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~ 1124 (1431)
T KOG1240|consen 1045 HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRV 1124 (1431)
T ss_pred             hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEE
Confidence            345555555443   6689999999999999998542       223344445678899999999999999999999999


Q ss_pred             EEeCCc--e-----------------EE----------------------------------EEEEeCCCCcceeEEEEc
Q psy11518         81 FRVGSW--Q-----------------LE----------------------------------KLFKKAHKGTAVNHISIH  107 (139)
Q Consensus        81 ~d~~~~--~-----------------~~----------------------------------~~~~~~~~~~~v~~~~~~  107 (139)
                      .++...  .                 ..                                  +.++..-..+.|++++.+
T Consensus      1125 ~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1125 LRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVID 1204 (1431)
T ss_pred             EEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEec
Confidence            887431  0                 00                                  000011122238999999


Q ss_pred             cCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518        108 PSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       108 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      |.+.+++.|+..|.+.+||+|-+.++..+.
T Consensus      1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~ 1234 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWE 1234 (1431)
T ss_pred             CCceEEEEecCCceEEEEEeecCceeeccc
Confidence            999999999999999999999888776654

>KOG1538|consensus

Probab=99.41  E-value=1.6e-11  Score=85.23  Aligned_cols=109  Identities=16%  Similarity=0.179  Sum_probs=83.8

Q ss_pred             EEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc--------eEE
Q psy11518         18 RSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW--------QLE   89 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~--------~~~   89 (139)
                      .+..|||..++.+.. ..+.+||+..|..+.++++|...|.|++|+.+|+.+|+|+.|..+.+|..+--        ..+
T Consensus        18 ~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~I   96 (1081)
T KOG1538|consen   18 IAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAI   96 (1081)
T ss_pred             eEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCee
Confidence            344458887776654 56899999999999999999999999999999999999999999999985321        111


Q ss_pred             EEEE---------------------------eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518         90 KLFK---------------------------KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        90 ~~~~---------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      ..+.                           ......++.+.+|..||++++.|-.+|+|.+-+-
T Consensus        97 QCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk  161 (1081)
T KOG1538|consen   97 QCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK  161 (1081)
T ss_pred             eEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence            1110                           0011224778899999999999999999988754

>KOG4328|consensus

Probab=99.40  E-value=7.7e-12  Score=82.79  Aligned_cols=120  Identities=15%  Similarity=0.230  Sum_probs=90.8

Q ss_pred             eEEEEe--c-CCcEEEEeCCCCeEEEEEccCCc----eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe----C
Q psy11518         16 SVRSVA--A-TSKLAASSGADETVVLYDMVKRK----QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV----G   84 (139)
Q Consensus        16 ~v~~~~--~-~~~~l~~~~~~~~v~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~----~   84 (139)
                      .|..+.  | ...++++++.|++.+|||++.-.    ++.....|...|.+..|||.+-.|++.+.|..|++||.    .
T Consensus       324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa  403 (498)
T KOG4328|consen  324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISA  403 (498)
T ss_pred             ccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccc
Confidence            555555  4 77789999999999999987532    22333468999999999997666999999999999998    3


Q ss_pred             CceEEEEEEeCCCCc---ceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         85 SWQLEKLFKKAHKGT---AVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ...+...+...+...   ...-..|.|+..++++|..-+.|.|||-..++.+..
T Consensus       404 ~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e  457 (498)
T KOG4328|consen  404 KDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE  457 (498)
T ss_pred             cCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee
Confidence            334444443322221   145568999999999999999999999998886654

>KOG1587|consensus

Probab=99.40  E-value=2.5e-12  Score=88.98  Aligned_cols=117  Identities=20%  Similarity=0.219  Sum_probs=91.2

Q ss_pred             cceeeEEEEec---CCcEEEEeCCCCeEEEEEcc-CCceeeEEEecCCCeEEEEECCC-CCEEEEecCCCcEEEEEeCCc
Q psy11518         12 SHTASVRSVAA---TSKLAASSGADETVVLYDMV-KRKQSGALMQHEGTITCLKFTPE-GSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        12 ~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      .|.+++.++.+   ..+.+++++ |..+++|.-. ...++..+..+...+++++|||. ...++++..+|.|.+||+...
T Consensus       396 ~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~  474 (555)
T KOG1587|consen  396 THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD  474 (555)
T ss_pred             ccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence            45666777664   455555555 9999999987 66778888888888999999995 567889999999999999776


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      .................+.|+++|+.+++|...|.+++|++..
T Consensus       475 ~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  475 DEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             ccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            5444432222344477889999999999999999999999964

>KOG0650|consensus

Probab=99.39  E-value=1.8e-11  Score=83.63  Aligned_cols=65  Identities=20%  Similarity=0.365  Sum_probs=51.4

Q ss_pred             eeeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCC
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS   67 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   67 (139)
                      |.....+.+.+|.+.+.+++.  .|.+|++|+.||+|++|.+.+++++.++. ..+.|.|++|+|.+.
T Consensus       388 FPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~  454 (733)
T KOG0650|consen  388 FPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSD  454 (733)
T ss_pred             CcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCC
Confidence            344455667789998888875  89999999999999999999999988765 344677777777543

>KOG2111|consensus

Probab=99.37  E-value=8.8e-11  Score=74.82  Aligned_cols=77  Identities=25%  Similarity=0.478  Sum_probs=66.8

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCe-EEEEEccCCceeeEEEe--cCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADET-VVLYDMVKRKQSGALMQ--HEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~-v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      ....|...|.|++.  +|..+|+++..|+ |+|||..++..+.++..  ....|.+++|+|+..+||+++..|++++|.+
T Consensus       176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  176 IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            34567777777776  9999999998885 78999999999999874  3467999999999999999999999999998


Q ss_pred             CC
Q psy11518         84 GS   85 (139)
Q Consensus        84 ~~   85 (139)
                      +.
T Consensus       256 ~~  257 (346)
T KOG2111|consen  256 RD  257 (346)
T ss_pred             ec
Confidence            65

>KOG2139|consensus

Probab=99.36  E-value=4.8e-11  Score=77.38  Aligned_cols=107  Identities=15%  Similarity=0.273  Sum_probs=79.5

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeC-CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSG-ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      ++..+| .+|+.+.|  ||..+++++ .+..|+|||+.++..+-......+.++-+.|+|++.++..+..|+..++|+..
T Consensus       190 l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  190 LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence            444455 78888888  888888887 56799999999987654443445678899999999999999999999999765


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEEEEc
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG  117 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  117 (139)
                      +.-..... .-..+ .|...+|+|.|++|+.+.
T Consensus       269 q~wt~erw-~lgsg-rvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  269 QSWTKERW-ILGSG-RVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             ccceecce-eccCC-ceeeeeecCCCCEEEEEE
Confidence            43322222 11223 499999999999776543

>KOG2321|consensus

Probab=99.34  E-value=2.2e-11  Score=82.91  Aligned_cols=132  Identities=20%  Similarity=0.347  Sum_probs=99.0

Q ss_pred             eEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEe------cCC-----CeEEEEECCCCCEEEEe
Q psy11518          4 LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ------HEG-----TITCLKFTPEGSHLISC   72 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~------~~~-----~v~~~~~~~~~~~l~~~   72 (139)
                      ++..|........+..+.....+|++|+.+|.|..||+.+...+..+..      |.+     .|+++.|+.+|-.+++|
T Consensus       167 fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVG  246 (703)
T KOG2321|consen  167 FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVG  246 (703)
T ss_pred             cccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEee
Confidence            3445555555555666666777999999999999999988766665542      323     38999999999999999


Q ss_pred             cCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCC--cEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         73 SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG--KLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        73 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ..+|.+.+||+++.+++..-.. ....+|..+.|.+.+  ..+++. +...++|||-.+|++...++
T Consensus       247 ts~G~v~iyDLRa~~pl~~kdh-~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE  311 (703)
T KOG2321|consen  247 TSTGSVLIYDLRASKPLLVKDH-GYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE  311 (703)
T ss_pred             ccCCcEEEEEcccCCceeeccc-CCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc
Confidence            9999999999999888776633 334458899998753  344443 45679999999998876653

>KOG1524|consensus

Probab=99.33  E-value=1.4e-11  Score=83.44  Aligned_cols=113  Identities=19%  Similarity=0.365  Sum_probs=85.7

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      .|.+.+.+-.|  +|.-|+++++||.|++|. ++|....++-....+|.|++|.|+.+.++-+..+ .+.+=-+.....+
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~  179 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKI  179 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecccccce
Confidence            46666666666  999999999999999998 5776666665667889999999987765544333 3444444444444


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      -.. ..|.+- |.++.|++...++++|++|-+..+||..
T Consensus       180 i~W-kAHDGi-iL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  180 IRW-RAHDGL-VLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             eEE-eccCcE-EEEeecCccccceeecCCceeEEeeccc
Confidence            444 456665 9999999999999999999999999974

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.31  E-value=7e-10  Score=73.95  Aligned_cols=112  Identities=29%  Similarity=0.477  Sum_probs=90.2

Q ss_pred             ecCCc-EEEEeCC-CCeEEEEEccC-CceeeEEEecCCCeEEEEECCCCCEEEEecC-CCcEEEEEeCCceEEEEEEeCC
Q psy11518         21 AATSK-LAASSGA-DETVVLYDMVK-RKQSGALMQHEGTITCLKFTPEGSHLISCSD-DGSIAIFRVGSWQLEKLFKKAH   96 (139)
Q Consensus        21 ~~~~~-~l~~~~~-~~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~   96 (139)
                      .+++. .++..+. ++.+.+|+... ......+..|...|..+.|+|++..++.++. ++.+++|+...+.....+ ..|
T Consensus       119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  197 (466)
T COG2319         119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL-AGH  197 (466)
T ss_pred             CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee-ccC
Confidence            44555 4554444 89999999988 7778888899999999999999998888885 999999999987777666 334


Q ss_pred             CCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCceeE
Q psy11518         97 KGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        97 ~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ... +.+++|+|++. .+++++.|+.+++||...+..+.
T Consensus       198 ~~~-v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~  235 (466)
T COG2319         198 TDP-VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR  235 (466)
T ss_pred             CCc-eEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEe
Confidence            444 99999999998 55555899999999988666654

>KOG2919|consensus

Probab=99.31  E-value=9e-11  Score=75.18  Aligned_cols=112  Identities=17%  Similarity=0.332  Sum_probs=87.3

Q ss_pred             EEEEecCCcEEEEeCCCCeEEEEEc-cCCcee--eE-----EEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCce
Q psy11518         17 VRSVAATSKLAASSGADETVVLYDM-VKRKQS--GA-----LMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~~~~v~i~~~-~~~~~~--~~-----~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ..++++||..|++|. ...|++||+ +.++..  ..     -.+..+-+.|++|+| +...++.++....+-++.-..+.
T Consensus       163 sL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~  241 (406)
T KOG2919|consen  163 SLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR  241 (406)
T ss_pred             eEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC
Confidence            345555999998775 578999998 444321  11     113466789999999 45688999998899999888888


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcC-CCeEEEEEcCCCc
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGK-DKTLRTWNLVKGR  131 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~  131 (139)
                      ++..+ ..|.++ |+.++|+++|+.+.+|.. |..|..||+|..+
T Consensus       242 pl~ll-ggh~gG-vThL~~~edGn~lfsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  242 PLQLL-GGHGGG-VTHLQWCEDGNKLFSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             ceeee-cccCCC-eeeEEeccCcCeecccccCCCeEEEEeehhcc
Confidence            88888 467777 999999999999999884 7889999998653

>KOG2695|consensus

Probab=99.31  E-value=1.8e-11  Score=78.88  Aligned_cols=121  Identities=17%  Similarity=0.253  Sum_probs=90.9

Q ss_pred             eEEEEec--CCcEEEEeCCCCeEEEEEccCC-----ceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCce
Q psy11518         16 SVRSVAA--TSKLAASSGADETVVLYDMVKR-----KQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      .|.+..|  .++++..|..+|.|-.+|++..     .+...+ .|.+.|++++... +.++|.+.+.+|+|++||++.-+
T Consensus       254 DVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K  332 (425)
T KOG2695|consen  254 DVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK  332 (425)
T ss_pred             hHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh
Confidence            4555555  5889999999999999999765     233333 5889999998776 78899999999999999998766


Q ss_pred             E---EEEEEeCCC-CcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         88 L---EKLFKKAHK-GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        88 ~---~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .   +..+ ..|. .....-+-.++....++++++|...+||.++.++.+..+.+
T Consensus       333 ~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  333 CKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             cccceeee-ecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            6   4444 2222 11122234456777899999999999999999998877654

>KOG0650|consensus

Probab=99.31  E-value=8.8e-12  Score=85.13  Aligned_cols=110  Identities=23%  Similarity=0.267  Sum_probs=87.4

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccCC-ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC-------Cc
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVKR-KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG-------SW   86 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-------~~   86 (139)
                      ...+++.+.|.-|+.|+.|+.+.++|+.-+ ++..++..|...+..++|++...++++|+.||.+.++.-.       +.
T Consensus       610 iS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnp  689 (733)
T KOG0650|consen  610 ISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNP  689 (733)
T ss_pred             eeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCC
Confidence            345566678999999999999999999754 6677888899999999999999999999999999988531       11


Q ss_pred             e--EEEEEEeCCCC---cceeEEEEccCCcEEEEEcCCCeEEEE
Q psy11518         87 Q--LEKLFKKAHKG---TAVNHISIHPSGKLALSVGKDKTLRTW  125 (139)
Q Consensus        87 ~--~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~  125 (139)
                      .  ++..+ ..|..   ..|.+..|||...+|++++.||.|++|
T Consensus       690 liVPlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  690 LIVPLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ceEeeeec-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            1  22222 22211   127788999999999999999999998

>KOG2139|consensus

Probab=99.29  E-value=1.3e-10  Score=75.44  Aligned_cols=109  Identities=17%  Similarity=0.259  Sum_probs=82.2

Q ss_pred             eEEEEec---CCcEEEEeCCCCeEEEEEccCC----ce----------eeEEEecCCCeEEEEECCCCCEEEEecC-CCc
Q psy11518         16 SVRSVAA---TSKLAASSGADETVVLYDMVKR----KQ----------SGALMQHEGTITCLKFTPEGSHLISCSD-DGS   77 (139)
Q Consensus        16 ~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~----~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~   77 (139)
                      .+.|++|   .+.-+++|+..| |.+|.....    +.          +...++| ..|++++|.++|..+++++. |..
T Consensus       142 nvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsss  219 (445)
T KOG2139|consen  142 NVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSS  219 (445)
T ss_pred             ceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcce
Confidence            4555555   666788887766 899986421    21          1122345 68999999999999998876 667


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      |.+||..++...... ....++ ++-+.|+||+.+++++..|+..++|+..
T Consensus       220 i~iWdpdtg~~~pL~-~~glgg-~slLkwSPdgd~lfaAt~davfrlw~e~  268 (445)
T KOG2139|consen  220 IMIWDPDTGQKIPLI-PKGLGG-FSLLKWSPDGDVLFAATCDAVFRLWQEN  268 (445)
T ss_pred             EEEEcCCCCCccccc-ccCCCc-eeeEEEcCCCCEEEEecccceeeeehhc
Confidence            999999998877665 333444 8889999999999999999999999554

>KOG1310|consensus

Probab=99.29  E-value=2.2e-11  Score=82.73  Aligned_cols=82  Identities=23%  Similarity=0.462  Sum_probs=74.8

Q ss_pred             eeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEcc--CCcEEEEEcCCCeEEE
Q psy11518         47 SGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP--SGKLALSVGKDKTLRT  124 (139)
Q Consensus        47 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i  124 (139)
                      ..++.+|++-|+|+.|+.+|.+|++|+.|-.+.+||.-..+++..+..+|... |.++.|-|  +.+++++|..|..|++
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaN-IFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTAN-IFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccc-eeEEeeeccCCCeEEEeccCcceEEE
Confidence            45678999999999999999999999999999999999888888887888877 99999999  6678999999999999


Q ss_pred             EEcCC
Q psy11518        125 WNLVK  129 (139)
Q Consensus       125 ~d~~~  129 (139)
                      ||+..
T Consensus       122 fdl~~  126 (758)
T KOG1310|consen  122 FDLDS  126 (758)
T ss_pred             Eeccc
Confidence            99985

>KOG0974|consensus

Probab=99.27  E-value=1.8e-10  Score=82.65  Aligned_cols=103  Identities=23%  Similarity=0.319  Sum_probs=89.0

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      +.-++++|+.-+.|.+|++...+....+.+|++.+..+.|+-+|+++++.+.|..+++|++.+.+........|... +.
T Consensus       144 ~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR-vw  222 (967)
T KOG0974|consen  144 EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR-VW  222 (967)
T ss_pred             cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce-eE
Confidence            56688999999999999987544445688999999999999999999999999999999999988776444566655 99


Q ss_pred             EEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518        103 HISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      .++|.|+  .++++++|.+.++|+..
T Consensus       223 ~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  223 ACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             EEEeccc--eeEEeccceEEEEEecc
Confidence            9999998  89999999999999553

>KOG0771|consensus

Probab=99.27  E-value=9.1e-11  Score=76.87  Aligned_cols=117  Identities=26%  Similarity=0.321  Sum_probs=95.6

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE-------------------------------------
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM-------------------------------------   51 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-------------------------------------   51 (139)
                      ..|...|.++.|  |++.|++-+.| ..+||+.+++.++....                                     
T Consensus       183 ~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~  261 (398)
T KOG0771|consen  183 IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLC  261 (398)
T ss_pred             HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEE
Confidence            356677777776  99999999999 89999998762111000                                     


Q ss_pred             ----ec-------------CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEE
Q psy11518         52 ----QH-------------EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLAL  114 (139)
Q Consensus        52 ----~~-------------~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  114 (139)
                          .+             ...|++++.+++|++++.|+.||.|.+++..+.+.....+..|... |+.+.|+|+.+.++
T Consensus       262 ~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~-VT~ltF~Pdsr~~~  340 (398)
T KOG0771|consen  262 DISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGF-VTGLTFSPDSRYLA  340 (398)
T ss_pred             EeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheee-eeeEEEcCCcCccc
Confidence                01             2368999999999999999999999999999999988887777776 99999999999999


Q ss_pred             EEcCCCeEEEEEcCC
Q psy11518        115 SVGKDKTLRTWNLVK  129 (139)
Q Consensus       115 ~~~~d~~i~i~d~~~  129 (139)
                      +.+.|...++..+.-
T Consensus       341 svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  341 SVSSDNEAAVTKLAV  355 (398)
T ss_pred             ccccCCceeEEEEee
Confidence            999998888887654

>KOG1524|consensus

Probab=99.26  E-value=1.1e-10  Score=79.15  Aligned_cols=104  Identities=21%  Similarity=0.227  Sum_probs=83.9

Q ss_pred             EEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518          6 QTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus         6 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      +.++-..|.+-|.++.|  ..+++++|++|-..++||. -|+++.+...|+.+|++++|+|+ ..++.++.. .++    
T Consensus       178 k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~R----  250 (737)
T KOG1524|consen  178 KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TAR----  250 (737)
T ss_pred             ceeEEeccCcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeeccc-cceeeeeee-eee----
Confidence            44556678999999998  7889999999999999994 67888888889999999999999 666666543 222    


Q ss_pred             CCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEE
Q psy11518         84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW  125 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  125 (139)
                              +..+..+. |..++|++||..+++|...|.+.+=
T Consensus       251 --------~~~p~~GS-ifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  251 --------FSSPRVGS-IFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             --------ecCCCccc-eEEEEEcCCCceeeccccCceEEEe
Confidence                    43455555 9999999999999999998886543

>KOG0280|consensus

Probab=99.25  E-value=5.6e-10  Score=70.68  Aligned_cols=112  Identities=16%  Similarity=0.121  Sum_probs=85.9

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCce--eeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeC-CceEEEEEEeCCCC
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQ--SGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVG-SWQLEKLFKKAHKG   98 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~   98 (139)
                      .+..++++..+|.+.+-+......  .+..+.|+-+.....|+. +.+.+.+|+.|+.+..||++ .+..++.-...|..
T Consensus       132 ~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~  211 (339)
T KOG0280|consen  132 SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTS  211 (339)
T ss_pred             cCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeec
Confidence            677789999999998655444433  346788999989889986 56788999999999999999 33444443345666


Q ss_pred             cceeEEEEcc-CCcEEEEEcCCCeEEEEEcC-CCceeEE
Q psy11518         99 TAVNHISIHP-SGKLALSVGKDKTLRTWNLV-KGRSAYI  135 (139)
Q Consensus        99 ~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~  135 (139)
                      + |.++.-+| .+.++++|+.|-.|++||.| -++++..
T Consensus       212 G-V~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~  249 (339)
T KOG0280|consen  212 G-VVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFK  249 (339)
T ss_pred             c-eEEEecCCCCCceEEEeccccceeeeehhcccCcccc
Confidence            6 88888776 56799999999999999999 4566544

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.25  E-value=3.7e-11  Score=54.65  Aligned_cols=38  Identities=29%  Similarity=0.573  Sum_probs=36.0

Q ss_pred             ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         45 KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      +++.++.+|.+.|.+++|+|+++++++++.|+.|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            56788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2321|consensus

Probab=99.24  E-value=2.6e-10  Score=77.89  Aligned_cols=112  Identities=10%  Similarity=0.161  Sum_probs=89.7

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCC-----
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHK-----   97 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----   97 (139)
                      ...+++.| ....|.=++++.|+.+..+....+.++++..++...++++|+.+|.+..||.+.......+....+     
T Consensus       145 scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~p  223 (703)
T KOG2321|consen  145 SCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHP  223 (703)
T ss_pred             CccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCc
Confidence            33444444 455677788999999988888888999999999989999999999999999987665544422211     


Q ss_pred             ----CcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         98 ----GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        98 ----~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                          ...|+++.|+.+|-.+++|+.+|.+.|||+++.+++..
T Consensus       224 g~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~  265 (703)
T KOG2321|consen  224 GGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV  265 (703)
T ss_pred             cccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence                12389999999999999999999999999999988754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.24  E-value=5.7e-09  Score=70.01  Aligned_cols=131  Identities=10%  Similarity=0.157  Sum_probs=89.1

Q ss_pred             eeEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec-CCCcEEEE
Q psy11518          3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS-DDGSIAIF   81 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~   81 (139)
                      +.+.++...+.......+++|++++++++.|+.|.++|+.+.+.+.+++... ....++++++|+++++++ ..+.+.++
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred             eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEe
Confidence            4556666543332223455689999999999999999999999998887544 457899999999998665 58899999


Q ss_pred             EeCCceEEEEEEeCC-----CCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCceeE
Q psy11518         82 RVGSWQLEKLFKKAH-----KGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        82 d~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      |.++.+.+..+....     ...++..+-.+|... ++++.-+.+.|.+.|..+.+.+.
T Consensus       106 D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~  164 (369)
T PF02239_consen  106 DAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLK  164 (369)
T ss_dssp             ETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEE
T ss_pred             ccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccc
Confidence            999999888774332     223477787788777 55566667899999988765543

...

>KOG4227|consensus

Probab=99.23  E-value=4e-10  Score=74.15  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=99.1

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEe--cCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQ--HEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      ..+.|...|.|+.|  ...++++|+.+++|..-|+++.+.+..+..  ..+.|..+..+|..+.+++.+.++.|.+||.+
T Consensus       100 ~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~R  179 (609)
T KOG4227|consen  100 MEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNR  179 (609)
T ss_pred             ccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEecc
Confidence            34557789999999  677899999999999999999988877753  23589999999999999999999999999998


Q ss_pred             Cce-EEEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCc
Q psy11518         85 SWQ-LEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        85 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ..+ ....+-....+.....+.|+|... +|++.++.+-+.+||.+..+
T Consensus       180 d~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~  228 (609)
T KOG4227|consen  180 DRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQA  228 (609)
T ss_pred             CCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecccc
Confidence            766 444443444444478899999665 77788888889999998643

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.20  E-value=7e-09  Score=68.66  Aligned_cols=110  Identities=15%  Similarity=0.252  Sum_probs=75.1

Q ss_pred             EEEecCCcEEEEeC-CCCeEEEEEccCCc----eeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEEEeCCceEEE-
Q psy11518         18 RSVAATSKLAASSG-ADETVVLYDMVKRK----QSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQLEK-   90 (139)
Q Consensus        18 ~~~~~~~~~l~~~~-~~~~v~i~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~-   90 (139)
                      ..+.++++++++++ .++.|.+|++++..    .+..+. +......++++|++++++ +...++.|.+||+.+...+. 
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            33445788877765 48899999986432    222222 223457788999998885 55567899999997633221 


Q ss_pred             ----EEEeCCCCcceeEEEEccCCcEEEEEcC-CCeEEEEEcCC
Q psy11518         91 ----LFKKAHKGTAVNHISIHPSGKLALSVGK-DKTLRTWNLVK  129 (139)
Q Consensus        91 ----~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~  129 (139)
                          .... ..+..+..++|+|++++++++.+ ++.|.+|++..
T Consensus       164 ~~~~~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        164 QEPAEVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             cCCCceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence                1111 12223678999999999988876 89999999973

>KOG1517|consensus

Probab=99.20  E-value=7.3e-10  Score=80.40  Aligned_cols=115  Identities=23%  Similarity=0.339  Sum_probs=88.7

Q ss_pred             eeeEEEEec---CCcEEEEeCCCCeEEEEEccCC---ceeeEEEecCCC--eEEEEECCCCCE-EEEecCCCcEEEEEeC
Q psy11518         14 TASVRSVAA---TSKLAASSGADETVVLYDMVKR---KQSGALMQHEGT--ITCLKFTPEGSH-LISCSDDGSIAIFRVG   84 (139)
Q Consensus        14 ~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~---~~~~~~~~~~~~--v~~~~~~~~~~~-l~~~~~d~~i~~~d~~   84 (139)
                      ...+++++.   .|+.+++|-.||+|++||.+..   ..+...+.|...  |..+.+.++|-. +++|+.+|.|.+||++
T Consensus      1208 ~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1208 STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred             CccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecc
Confidence            344566665   6899999999999999998654   345667778777  999999886654 9999999999999998


Q ss_pred             CceEEEEEE-eCCC--CcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         85 SWQLEKLFK-KAHK--GTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        85 ~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      .......+. ..+.  ++..+++..|++...+++|+. +.|.||++..
T Consensus      1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred             cCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence            743222111 1222  334899999999999999998 8999999864

>KOG4547|consensus

Probab=99.20  E-value=2.1e-09  Score=73.31  Aligned_cols=111  Identities=14%  Similarity=0.247  Sum_probs=96.1

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEE--ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcc
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALM--QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA  100 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  100 (139)
                      +...++-|...|.|.+|+...++....+.  .|.+.|.++.++.+-..+.+++.|+++..|+......+... ...... 
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~-~~~~~~-  146 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW-KEQKPL-  146 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee-ccCCCc-
Confidence            44468889999999999999998887776  58999999999999999999999999999999999888888 444444 


Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +.+++.+||+..+++++  +.|.+||+++++.+..+.
T Consensus       147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ft  181 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFT  181 (541)
T ss_pred             cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEec
Confidence            89999999999999887  579999999998877653

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.18  E-value=7.8e-09  Score=68.43  Aligned_cols=112  Identities=12%  Similarity=0.113  Sum_probs=75.1

Q ss_pred             EEEEecCCcEEEEe-CCCCeEEEEEccC-Cce--eeEEEecCCCeEEEEECCCCCEEEEecC-CCcEEEEEeCCc-eEEE
Q psy11518         17 VRSVAATSKLAASS-GADETVVLYDMVK-RKQ--SGALMQHEGTITCLKFTPEGSHLISCSD-DGSIAIFRVGSW-QLEK   90 (139)
Q Consensus        17 v~~~~~~~~~l~~~-~~~~~v~i~~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~-~~~~   90 (139)
                      .+.+++++++|+++ ..++.|.+|++.. ++.  +.... .......++++|+++++++++. ++.|.+|++.+. ....
T Consensus        39 ~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~  117 (330)
T PRK11028         39 PMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVA  117 (330)
T ss_pred             cEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCC
Confidence            34666788888665 4578899999863 332  12221 2334578999999998877654 888999999642 2211


Q ss_pred             EEE-eCCCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcCCC
Q psy11518         91 LFK-KAHKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLVKG  130 (139)
Q Consensus        91 ~~~-~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~  130 (139)
                      ... ..+... +..++++|+++++++++ .++.|.+||+.+.
T Consensus       118 ~~~~~~~~~~-~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028        118 PIQIIEGLEG-CHSANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             ceeeccCCCc-ccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            111 122222 67789999999886555 5799999999763

>KOG0280|consensus

Probab=99.17  E-value=3.4e-10  Score=71.61  Aligned_cols=97  Identities=15%  Similarity=0.125  Sum_probs=71.9

Q ss_pred             cceeeEEEEec---CCcEEEEeCCCCeEEEEEcc-CCceeeE-EEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCC
Q psy11518         12 SHTASVRSVAA---TSKLAASSGADETVVLYDMV-KRKQSGA-LMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        12 ~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~-~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +|...+.-..|   +.+.+.+|+.|+.++.||++ .++.+.. .+.|...|.++.-+| .+.++++|+.|..|++||.++
T Consensus       163 ~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn  242 (339)
T KOG0280|consen  163 VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN  242 (339)
T ss_pred             ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence            34444444444   77899999999999999998 3344433 567889999998876 688999999999999999985


Q ss_pred             -ceEEEEEEeCCCCcceeEEEEccCCc
Q psy11518         86 -WQLEKLFKKAHKGTAVNHISIHPSGK  111 (139)
Q Consensus        86 -~~~~~~~~~~~~~~~v~~~~~~~~~~  111 (139)
                       ++++...  ...++ |+.+.++|.-.
T Consensus       243 m~kPl~~~--~v~GG-VWRi~~~p~~~  266 (339)
T KOG0280|consen  243 MGKPLFKA--KVGGG-VWRIKHHPEIF  266 (339)
T ss_pred             ccCccccC--ccccc-eEEEEecchhh
Confidence             3444433  22344 99999998443

>KOG4547|consensus

Probab=99.15  E-value=3.8e-09  Score=72.07  Aligned_cols=123  Identities=21%  Similarity=0.320  Sum_probs=102.1

Q ss_pred             eeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEE
Q psy11518          3 TLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAI   80 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   80 (139)
                      ++...+...+|.+.+.++.+  +-..|.+++.|..+..|++...+.+...+.....+.+++.+|++..+++++  ++|++
T Consensus        91 ~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~  168 (541)
T KOG4547|consen   91 EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKV  168 (541)
T ss_pred             eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEE
Confidence            45567777889999999987  666899999999999999999999999998889999999999999999887  47999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccC-----CcEEEEE-cCCCeEEEEEcCC
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPS-----GKLALSV-GKDKTLRTWNLVK  129 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~d~~i~i~d~~~  129 (139)
                      ||+.+.+....+ .+|. .+|++++|..+     |.+++++ ..++-+.+|=.+.
T Consensus       169 ~~~~~kevv~~f-tgh~-s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  169 LDIETKEVVITF-TGHG-SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEccCceEEEEe-cCCC-cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            999999998888 4544 45999999887     6666554 4566677886554

>KOG0290|consensus

Probab=99.15  E-value=1.8e-09  Score=68.49  Aligned_cols=118  Identities=19%  Similarity=0.235  Sum_probs=83.2

Q ss_pred             cceeeEEEEec--CC-----cEEEEeCCCCeEEEEEccCCcee----eEE-----EecCCCeEEEEECC-CCCEEEEecC
Q psy11518         12 SHTASVRSVAA--TS-----KLAASSGADETVVLYDMVKRKQS----GAL-----MQHEGTITCLKFTP-EGSHLISCSD   74 (139)
Q Consensus        12 ~~~~~v~~~~~--~~-----~~l~~~~~~~~v~i~~~~~~~~~----~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~   74 (139)
                      .|..+++.+.|  +.     .+||+.  +..+++|.+...+..    ..+     ..+.+++++..|+. +.+++.+++-
T Consensus        94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            35556666665  22     234443  467999998742211    111     23567899999987 7889999999


Q ss_pred             CCcEEEEEeCCceE--EEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCce
Q psy11518         75 DGSIAIFRVGSWQL--EKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        75 d~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      |-+..+||+.++..  ..+.-..|... |..++|...+. .+++.|.||.+|+||+|....
T Consensus       172 DTTCTiWdie~~~~~~vkTQLIAHDKE-V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH  231 (364)
T KOG0290|consen  172 DTTCTIWDIETGVSGTVKTQLIAHDKE-VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH  231 (364)
T ss_pred             cCeEEEEEEeeccccceeeEEEecCcc-eeEEEeccCccceEEEecCCCcEEEEEeccccc
Confidence            99999999998733  22221455554 99999998554 789999999999999997644

>KOG1538|consensus

Probab=99.14  E-value=3.3e-09  Score=74.11  Aligned_cols=118  Identities=22%  Similarity=0.282  Sum_probs=86.0

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc--------eeeEE---------------------------Eec
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRK--------QSGAL---------------------------MQH   53 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~--------~~~~~---------------------------~~~   53 (139)
                      .+|...|.|+++  +|+.+++|+.|..|.+|+.+-.-        .++..                           ..|
T Consensus        50 KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~  129 (1081)
T KOG1538|consen   50 KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKH  129 (1081)
T ss_pred             ccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhh
Confidence            478888999988  99999999999999999975321        11100                           011


Q ss_pred             --CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCC-----cEEEEEcCCCeEEEEE
Q psy11518         54 --EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG-----KLALSVGKDKTLRTWN  126 (139)
Q Consensus        54 --~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~i~d  126 (139)
                        ...+.+++|..||++++.|-.+|+|.+-+-..-+....-..+....+|.+++|+|+.     ..+++.....++.+|.
T Consensus       130 kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~  209 (1081)
T KOG1538|consen  130 KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQ  209 (1081)
T ss_pred             hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEE
Confidence              246788999999999999999999999875433333333234445569999999943     4677888888888887


Q ss_pred             cC
Q psy11518        127 LV  128 (139)
Q Consensus       127 ~~  128 (139)
                      +.
T Consensus       210 Ls  211 (1081)
T KOG1538|consen  210 LS  211 (1081)
T ss_pred             ec
Confidence            74

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.13  E-value=1.9e-08  Score=69.04  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=79.0

Q ss_pred             eeeEEEEe--cCCcEEEEeC---CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCc--EEEEEeCC
Q psy11518         14 TASVRSVA--ATSKLAASSG---ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGS--IAIFRVGS   85 (139)
Q Consensus        14 ~~~v~~~~--~~~~~l~~~~---~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~   85 (139)
                      ...+.+..  +||+.|+..+   .+..|.+||+.+++.. .+..+.+.+...+|+|+|+.++ +.+.++.  |.+||+.+
T Consensus       201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~  279 (435)
T PRK05137        201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS  279 (435)
T ss_pred             CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence            33454444  4888877654   3468999999887653 3445566677889999998775 5555555  77778887


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcC-C--CeEEEEEcCCCcee
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGK-D--KTLRTWNLVKGRSA  133 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~  133 (139)
                      +......  .+... ....+|+|||+.++..+. +  ..|.++|+..++..
T Consensus       280 ~~~~~Lt--~~~~~-~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~  327 (435)
T PRK05137        280 GTTTRLT--DSPAI-DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR  327 (435)
T ss_pred             CceEEcc--CCCCc-cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence            7654433  22222 567899999998887663 2  36888898766543

>KOG3881|consensus

Probab=99.11  E-value=2.5e-09  Score=69.93  Aligned_cols=111  Identities=14%  Similarity=0.212  Sum_probs=87.1

Q ss_pred             CCcEEEEeCCC--CeEEEEEccCCceeeEEEe---------cCCCeEEEEECCC--CCEEEEecCCCcEEEEEeCCceE-
Q psy11518         23 TSKLAASSGAD--ETVVLYDMVKRKQSGALMQ---------HEGTITCLKFTPE--GSHLISCSDDGSIAIFRVGSWQL-   88 (139)
Q Consensus        23 ~~~~l~~~~~~--~~v~i~~~~~~~~~~~~~~---------~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~~~~~-   88 (139)
                      ...++++|+..  ..+.+||++..+++..-+-         -.-.++.+.|.+.  ...|+++..-+++++||.+.++. 
T Consensus       160 ~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP  239 (412)
T KOG3881|consen  160 DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP  239 (412)
T ss_pred             CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc
Confidence            45567779988  8999999988866554331         1223577889887  78899999999999999986653 


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ...+  .....+++++...|+++++++|...+.+..||++.++....
T Consensus       240 V~~f--d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~  284 (412)
T KOG3881|consen  240 VAQF--DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC  284 (412)
T ss_pred             eeEe--ccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence            3333  33444599999999999999999999999999999887654

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=99.09  E-value=5.6e-08  Score=66.85  Aligned_cols=76  Identities=17%  Similarity=0.257  Sum_probs=63.1

Q ss_pred             ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         52 QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        52 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ...+.+.+++++|+...++.|+.||.|.+||...+.....-  .  .-.+..++|||+|..+++|++.|.+.+||+.-+.
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~k--a--~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAK--A--EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeee--e--cccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            36778999999999999999999999999998776443331  1  2227889999999999999999999999987543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.08  E-value=1.5e-09  Score=49.25  Aligned_cols=38  Identities=29%  Similarity=0.632  Sum_probs=32.3

Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      ++...+ ..|... |.+++|+|++.++++++.|+.|++||
T Consensus         2 ~~~~~~-~~h~~~-i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTF-RGHSSS-INSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEE-ESSSSS-EEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEE-cCCCCc-EEEEEEecccccceeeCCCCEEEEEC
Confidence            445555 556655 99999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=1.1e-08  Score=70.07  Aligned_cols=107  Identities=18%  Similarity=0.250  Sum_probs=70.0

Q ss_pred             EEecCCcEEEEeCC---CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEe-cCCCcEEEE--EeCCceEEEEE
Q psy11518         19 SVAATSKLAASSGA---DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC-SDDGSIAIF--RVGSWQLEKLF   92 (139)
Q Consensus        19 ~~~~~~~~l~~~~~---~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~--d~~~~~~~~~~   92 (139)
                      .++++|+.++..+.   +..|.+||+.+++.... ....+.....+|+|+|+.++.+ +.+|.+.+|  |+.++......
T Consensus       210 ~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt  288 (429)
T PRK01742        210 AWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-ASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT  288 (429)
T ss_pred             eEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ecCCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec
Confidence            44458988887653   34799999988754221 2122233468999999988765 467766555  66555543332


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcCC
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLVK  129 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~  129 (139)
                        .+... +...+|+|||+.++..+ .++...||++..
T Consensus       289 --~~~~~-~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        289 --SGAGN-NTEPSWSPDGQSILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             --cCCCC-cCCEEECCCCCEEEEEECCCCCceEEEEEC
Confidence              23333 77899999999777554 567788887643

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.07  E-value=5.9e-08  Score=66.55  Aligned_cols=111  Identities=13%  Similarity=0.159  Sum_probs=73.0

Q ss_pred             EEEecCCcEEEEeC---CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEe-cCCC--cEEEEEeCCceEEEE
Q psy11518         18 RSVAATSKLAASSG---ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC-SDDG--SIAIFRVGSWQLEKL   91 (139)
Q Consensus        18 ~~~~~~~~~l~~~~---~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~--~i~~~d~~~~~~~~~   91 (139)
                      ..+++||+.|+..+   .+..|.+|++.+++.... ......+....|+|+|+.|+.. +.++  .|.+||+.++.....
T Consensus       204 p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l  282 (429)
T PRK03629        204 PAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV  282 (429)
T ss_pred             eEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc
Confidence            34455898887543   345799999988754322 2223334568999999988744 4454  488999988766544


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCC-C--eEEEEEcCCCce
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKD-K--TLRTWNLVKGRS  132 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i~i~d~~~~~~  132 (139)
                      .  .... .+....|+|||+.|+..+.+ +  .|..+|+.+++.
T Consensus       283 t--~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~  323 (429)
T PRK03629        283 T--DGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP  323 (429)
T ss_pred             c--CCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe
Confidence            3  2222 26789999999988776653 3  455557766644

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.06  E-value=6.6e-08  Score=65.39  Aligned_cols=110  Identities=13%  Similarity=0.261  Sum_probs=89.1

Q ss_pred             CCcEEEEeCCCC-eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         23 TSKLAASSGADE-TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        23 ~~~~l~~~~~~~-~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                      +++.++.|..|| .+-+||..+++. ..+...-+.|.++..+|+|++++.+.....|.+.|+.++.....- ....+- |
T Consensus       370 ~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~id-kS~~~l-I  446 (668)
T COG4946         370 DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID-KSEYGL-I  446 (668)
T ss_pred             CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec-ccccce-e
Confidence            677889999998 999999887764 344445678999999999999999999999999999998765433 334444 9


Q ss_pred             eEEEEccCCcEEEEEcCC----CeEEEEEcCCCceeEE
Q psy11518        102 NHISIHPSGKLALSVGKD----KTLRTWNLVKGRSAYI  135 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~~~  135 (139)
                      ...+|||++++++-+--+    ..|+++|+..++....
T Consensus       447 tdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         447 TDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             EEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            999999999999988654    4699999998877654

>KOG1587|consensus

Probab=99.06  E-value=2.4e-09  Score=74.56  Aligned_cols=117  Identities=13%  Similarity=0.116  Sum_probs=83.8

Q ss_pred             eEEEEec---CCcEEEEeCCCCeEEEEEccCC--------ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518         16 SVRSVAA---TSKLAASSGADETVVLYDMVKR--------KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        16 ~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      .++++.|   +...+++|+..|.|.--+-...        +....+..|.+.|.++.++|=+..++..+.|..+++|...
T Consensus       349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~  428 (555)
T KOG1587|consen  349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSED  428 (555)
T ss_pred             ceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEecccc
Confidence            4556665   7788999999999887332222        2233556789999999999966555544449999999987


Q ss_pred             -CceEEEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCceeE
Q psy11518         85 -SWQLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        85 -~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                       ...++..+ ..+... +.+++|+|... .++++..||.+.+||+......+
T Consensus       429 ~~~~Pl~~~-~~~~~~-v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P  478 (555)
T KOG1587|consen  429 VIASPLLSL-DSSPDY-VTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP  478 (555)
T ss_pred             CCCCcchhh-hhccce-eeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence             44455444 233333 99999999765 67778889999999998765443

>KOG2041|consensus

Probab=99.05  E-value=2.3e-09  Score=75.42  Aligned_cols=116  Identities=13%  Similarity=0.146  Sum_probs=94.8

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc---------------eeeEEEecCCCeEEEEECCCCCEEEEecCC
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRK---------------QSGALMQHEGTITCLKFTPEGSHLISCSDD   75 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d   75 (139)
                      ......|++|  +..++++|+.||.+++..+.+..               .-+++.+|.+.|..+.|+.+.+.|.+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            4566778888  78899999999999999875421               124567999999999999999999999999


Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      |.|.+|-+.++.....+....+.+.|.+++|+.+|..+...-+||.|.+=.+.
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence            99999999988876655455555559999999999999998888888665443

>KOG1409|consensus

Probab=99.04  E-value=2.6e-09  Score=69.04  Aligned_cols=77  Identities=26%  Similarity=0.490  Sum_probs=65.3

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCce-eeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQ-SGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      ....+|...+.+..|  ....+.+|..|..+.+||+...+- ..++.+|...|..+++.+..+.+.+++.||.|.+|+.+
T Consensus       191 ~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  191 TTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             EEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            345578889999988  566889999999999999866543 46778999999999998888999999999999999874

>KOG1517|consensus

Probab=99.03  E-value=8.6e-09  Score=75.09  Aligned_cols=107  Identities=16%  Similarity=0.223  Sum_probs=78.2

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEe-cCCCeEEEEEC-CCCCEEEEecCCCcEEEEEeCCceE---EEEEEeCCC
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQ-HEGTITCLKFT-PEGSHLISCSDDGSIAIFRVGSWQL---EKLFKKAHK   97 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~   97 (139)
                      ...+|++++.-..|+|||.........+.. ....+++++-+ +.|+.++.|..||.|++||.+-...   +..+ ..|.
T Consensus      1176 ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~-R~h~ 1254 (1387)
T KOG1517|consen 1176 QSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY-REHN 1254 (1387)
T ss_pred             hCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee-cccC
Confidence            444555566689999999988777666553 34456666544 3679999999999999999875433   3333 2333


Q ss_pred             -CcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCC
Q psy11518         98 -GTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        98 -~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~  130 (139)
                       ..+|..+.+.++|- .+++|+.+|.|.+||+|..
T Consensus      1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred             CcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence             22388899988775 4999999999999999984

>KOG1963|consensus

Probab=99.02  E-value=1.6e-08  Score=71.81  Aligned_cols=126  Identities=15%  Similarity=0.253  Sum_probs=99.7

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      =|...|++++|  +|.+|++|+..+.+.+|...+++ ..-++.-.++|..+.++|++.+.+....|..|.+....+....
T Consensus       249 WH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k  327 (792)
T KOG1963|consen  249 WHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK  327 (792)
T ss_pred             ecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh
Confidence            35667788777  99999999999999999999988 5556667789999999999999999999999999887554433


Q ss_pred             EEEE---eC------CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         90 KLFK---KA------HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        90 ~~~~---~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ..+.   ..      ....-.+.++++|..+.++-.+..+.|.+||+-+.+.+..+.+
T Consensus       328 ~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v  385 (792)
T KOG1963|consen  328 STISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQV  385 (792)
T ss_pred             hhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEE
Confidence            3221   11      0111156789999888888999999999999999888876653

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=1.4e-08  Score=69.60  Aligned_cols=96  Identities=16%  Similarity=0.171  Sum_probs=67.9

Q ss_pred             CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC---CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccC
Q psy11518         33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD---GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS  109 (139)
Q Consensus        33 ~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  109 (139)
                      +..|.+||..... ...+..+...+...+|+|+|+.++..+.+   ..|.+||+.+++......  ..+. ....+|+||
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~--~~g~-~~~~~wSPD  258 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS--FRGH-NGAPAFSPD  258 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec--CCCc-cCceeECCC
Confidence            4689999986544 45566777889999999999999876543   369999998876433321  1222 446899999


Q ss_pred             CcEEEEEc-CCCeEEEE--EcCCCce
Q psy11518        110 GKLALSVG-KDKTLRTW--NLVKGRS  132 (139)
Q Consensus       110 ~~~l~~~~-~d~~i~i~--d~~~~~~  132 (139)
                      |+.|+.+. .+|.+.||  |+.+++.
T Consensus       259 G~~La~~~~~~g~~~Iy~~d~~~~~~  284 (429)
T PRK01742        259 GSRLAFASSKDGVLNIYVMGANGGTP  284 (429)
T ss_pred             CCEEEEEEecCCcEEEEEEECCCCCe
Confidence            99888764 57765554  6666554

>KOG4190|consensus

Probab=98.99  E-value=1.5e-09  Score=74.53  Aligned_cols=134  Identities=17%  Similarity=0.193  Sum_probs=95.6

Q ss_pred             eeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccC-------CceeeEEEecCCCeEEEEECCCCCEEEEec
Q psy11518          3 TLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVK-------RKQSGALMQHEGTITCLKFTPEGSHLISCS   73 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~   73 (139)
                      +.++-..+.||...|..+..  +.+.+++++.|.+|++|.++.       ..+..+++.|+.+|..+.|..+-++++++ 
T Consensus       724 ~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-  802 (1034)
T KOG4190|consen  724 DHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-  802 (1034)
T ss_pred             ceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-
Confidence            34444455678888877775  778899999999999999864       24667788999999999999888777655 


Q ss_pred             CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEcc--CCcEEEEE-cCCCeEEEEEcCCCceeEEEec
Q psy11518         74 DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP--SGKLALSV-GKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        74 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                       ||-|++||.--+.++..+....+.+.+..+..-+  +...++.+ +...+++++|.+.+.....+.+
T Consensus       803 -D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kV  869 (1034)
T KOG4190|consen  803 -DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKV  869 (1034)
T ss_pred             -cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEe
Confidence             7889999987777665443332222234344444  34444444 5788999999999887765543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.98  E-value=2.3e-07  Score=61.65  Aligned_cols=114  Identities=11%  Similarity=0.012  Sum_probs=86.4

Q ss_pred             CCcEEEEeCCC-----CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC----------CCcEEEEEeCCce
Q psy11518         23 TSKLAASSGAD-----ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD----------DGSIAIFRVGSWQ   87 (139)
Q Consensus        23 ~~~~l~~~~~~-----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~~~   87 (139)
                      ++..+++-...     +.|.+.|..+.+.+.++..-..+- .+ ++|+++.++.+..          +..|.+||..+.+
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            55555544443     899999999999888887544332 34 9999998875544          7789999999999


Q ss_pred             EEEEEEeCCC-----CcceeEEEEccCCcEEEEEc-C-CCeEEEEEcCCCceeEEEec
Q psy11518         88 LEKLFKKAHK-----GTAVNHISIHPSGKLALSVG-K-DKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        88 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~-d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ....+..+..     ......++++|||+++++.. . +..|.+.|+.+++.+..+.+
T Consensus        89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658        89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence            9988854322     22245789999999998776 3 78999999999999887653

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=9e-08  Score=65.74  Aligned_cols=114  Identities=22%  Similarity=0.288  Sum_probs=75.2

Q ss_pred             eEEEEe--cCCcEEEEeCC---CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCC--cEEEEEeCCce
Q psy11518         16 SVRSVA--ATSKLAASSGA---DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDG--SIAIFRVGSWQ   87 (139)
Q Consensus        16 ~v~~~~--~~~~~l~~~~~---~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~   87 (139)
                      .+....  ++++.|+..+.   +..|.+||+.+++... +....+.....+|+|+|+.++ +.+.++  .|.+||+.+++
T Consensus       205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~  283 (433)
T PRK04922        205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ  283 (433)
T ss_pred             ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence            344444  48888886653   3479999998776532 333344456789999998775 445555  59999998877


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcC-CC--eEEEEEcCCCcee
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGK-DK--TLRTWNLVKGRSA  133 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~  133 (139)
                      .....  .+... ....+|+|||++++..+. ++  .|.++|+.+++..
T Consensus       284 ~~~lt--~~~~~-~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~  329 (433)
T PRK04922        284 LTRLT--NHFGI-DTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE  329 (433)
T ss_pred             eEECc--cCCCC-ccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            54433  22222 467899999998887654 34  4777777766543

>KOG2315|consensus

Probab=98.97  E-value=2.3e-08  Score=68.23  Aligned_cols=114  Identities=19%  Similarity=0.316  Sum_probs=81.7

Q ss_pred             eeeEEEEec--CCcEEEE--eCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC---CCcEEEEEeCCc
Q psy11518         14 TASVRSVAA--TSKLAAS--SGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD---DGSIAIFRVGSW   86 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l~~--~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~   86 (139)
                      .++|.++.|  ++.-+++  |-.-..+.|||+ .+.++..+.  +++-+++-|+|.|++++.++.   .|.+.+||..+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNL-RGKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcC-CCCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            567777777  5544433  334567888886 455565554  456689999999999987765   578999999997


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcC------CCeEEEEEcCCCceeEE
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGK------DKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~~  135 (139)
                      +.+..+....    -+-..|+|||+++++++.      |+.++||+. +|..++.
T Consensus       347 K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~  396 (566)
T KOG2315|consen  347 KLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHE  396 (566)
T ss_pred             hhccccccCC----ceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeeh
Confidence            7777762222    355899999999999874      778999998 4555443

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=2e-07  Score=64.08  Aligned_cols=111  Identities=21%  Similarity=0.229  Sum_probs=73.6

Q ss_pred             EEecCCcEEE-EeCCCC--eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec-CCCc--EEEEEeCCceEEEEE
Q psy11518         19 SVAATSKLAA-SSGADE--TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS-DDGS--IAIFRVGSWQLEKLF   92 (139)
Q Consensus        19 ~~~~~~~~l~-~~~~~~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~~~d~~~~~~~~~~   92 (139)
                      .++++|+.++ +.+.++  .|.+||+.+++. ..+..+.......+|+|+++.++..+ .++.  |.++|+.+++.....
T Consensus       254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt  332 (433)
T PRK04922        254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT  332 (433)
T ss_pred             eECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence            4555888765 444444  699999987764 34444554556789999999887554 4444  666677666544333


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcCC---CeEEEEEcCCCcee
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGKD---KTLRTWNLVKGRSA  133 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~  133 (139)
                       .. ... ....+|+|+|++++..+.+   ..|.+||+.+++..
T Consensus       333 -~~-g~~-~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        333 -FQ-GNY-NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             -cC-CCC-ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence             11 122 4568999999998876533   36999999887654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=1.5e-07  Score=64.50  Aligned_cols=109  Identities=16%  Similarity=0.246  Sum_probs=69.4

Q ss_pred             EEecCCcEEEEeCC---CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEEEe--CCceEEEEE
Q psy11518         19 SVAATSKLAASSGA---DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRV--GSWQLEKLF   92 (139)
Q Consensus        19 ~~~~~~~~l~~~~~---~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~--~~~~~~~~~   92 (139)
                      .++++|+.++..+.   ...|.+||+.+++... +....+.+...+|+|+++.++ +.+.++...+|.+  ..+.. ..+
T Consensus       202 ~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~l  279 (427)
T PRK02889        202 AWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGL-RRL  279 (427)
T ss_pred             eEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCc-EEC
Confidence            44458888876553   3469999998886543 333344567889999999886 5677887666654  44443 333


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcC-CCeEEEEE--cCCCc
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGK-DKTLRTWN--LVKGR  131 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d--~~~~~  131 (139)
                       ..+... .....|+|||+.++..+. ++...+|.  +.+++
T Consensus       280 -t~~~~~-~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~  319 (427)
T PRK02889        280 -TQSSGI-DTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA  319 (427)
T ss_pred             -CCCCCC-CcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence             222222 556889999998876554 45555664  44444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=1.4e-07  Score=64.83  Aligned_cols=96  Identities=15%  Similarity=0.204  Sum_probs=68.9

Q ss_pred             CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC---CCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCC
Q psy11518         34 ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD---DGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG  110 (139)
Q Consensus        34 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  110 (139)
                      ..|.++|.. +.....+..+...+...+|+|+|+.|+..+.   +..|.+||+.+++.....  ...+. +...+|+|||
T Consensus       182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~--~~~g~-~~~~~~SPDG  257 (435)
T PRK05137        182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG--NFPGM-TFAPRFSPDG  257 (435)
T ss_pred             eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee--cCCCc-ccCcEECCCC
Confidence            378888874 4445566677788999999999998876543   467999999887664332  22333 6788999999


Q ss_pred             cEEE-EEcCCCe--EEEEEcCCCcee
Q psy11518        111 KLAL-SVGKDKT--LRTWNLVKGRSA  133 (139)
Q Consensus       111 ~~l~-~~~~d~~--i~i~d~~~~~~~  133 (139)
                      +.++ +.+.++.  |.+||+.+++..
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~~  283 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTTT  283 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCceE
Confidence            8775 4454544  777798877654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.93  E-value=2.6e-07  Score=63.40  Aligned_cols=112  Identities=12%  Similarity=0.183  Sum_probs=73.5

Q ss_pred             EEEecCCcEEEEe-CCCC--eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC-CCc--EEEEEeCCceEEEE
Q psy11518         18 RSVAATSKLAASS-GADE--TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD-DGS--IAIFRVGSWQLEKL   91 (139)
Q Consensus        18 ~~~~~~~~~l~~~-~~~~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~~~d~~~~~~~~~   91 (139)
                      ..+++||+.|+.. ..++  .|.+||+++++... +..+...+....|+|+++.++..+. ++.  |..+|+.++.....
T Consensus       248 ~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~l  326 (429)
T PRK03629        248 PAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRI  326 (429)
T ss_pred             eEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEe
Confidence            3566689877754 4344  58889998776543 3334456778899999998875554 444  44456666654433


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCC---CeEEEEEcCCCcee
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKD---KTLRTWNLVKGRSA  133 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~  133 (139)
                      . . .. .......|+|+|++++..+.+   ..|.+||+.+++..
T Consensus       327 t-~-~~-~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        327 T-W-EG-SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  368 (429)
T ss_pred             e-c-CC-CCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            2 1 12 225678899999988776532   45888999887654

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.92  E-value=4.4e-07  Score=68.31  Aligned_cols=114  Identities=13%  Similarity=0.129  Sum_probs=81.6

Q ss_pred             EEecCCc-EEEEeCCCCeEEEEEccCCceeeEEEe-------------c--------CCCeEEEEECCCCCEEEEecCCC
Q psy11518         19 SVAATSK-LAASSGADETVVLYDMVKRKQSGALMQ-------------H--------EGTITCLKFTPEGSHLISCSDDG   76 (139)
Q Consensus        19 ~~~~~~~-~l~~~~~~~~v~i~~~~~~~~~~~~~~-------------~--------~~~v~~~~~~~~~~~l~~~~~d~   76 (139)
                      ++.++++ ++++-..++.|++||+.++.......+             .        -.....++++++|+.+++-..++
T Consensus       746 avspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~  825 (1057)
T PLN02919        746 SLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNH  825 (1057)
T ss_pred             EEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCC
Confidence            4445666 556667789999999887643211100             0        01235788999999888888899


Q ss_pred             cEEEEEeCCceEEEEEEeCCC-----------CcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         77 SIAIFRVGSWQLEKLFKKAHK-----------GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      .|++||..++...........           -..+..++++++|+.+++-+.++.|++||+++++.
T Consensus       826 rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        826 KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            999999988766544422110           11367899999999999989999999999999875

>KOG1064|consensus

Probab=98.91  E-value=1.4e-09  Score=82.57  Aligned_cols=114  Identities=20%  Similarity=0.354  Sum_probs=88.0

Q ss_pred             ecceeeEEEEecCCcEEEEeC---CCCeEEEEEccCC-ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         11 HSHTASVRSVAATSKLAASSG---ADETVVLYDMVKR-KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        11 ~~~~~~v~~~~~~~~~l~~~~---~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      +.|.....++.|-+..+++++   .++.+.+||.... ..-..-..|.+.++++++.|..+.+++|+++|.+++||++..
T Consensus      2289 qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred             ccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence            346666677777567777765   5679999996433 222222689999999999999999999999999999999988


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +++..++.           ++ ...++++|+..|.++||++..-..+..+
T Consensus      2369 ql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~ 2406 (2439)
T KOG1064|consen 2369 QLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTF 2406 (2439)
T ss_pred             HHHHHhhh-----------hh-hhheeeccCcccceEEEEccccchhhcC
Confidence            77666522           44 5678999999999999999877655543

>KOG1064|consensus

Probab=98.90  E-value=3e-09  Score=80.86  Aligned_cols=128  Identities=14%  Similarity=0.204  Sum_probs=97.8

Q ss_pred             eEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec---CCCcE
Q psy11518          4 LTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS---DDGSI   78 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i   78 (139)
                      .+-.++..+. ..+..+.|  +|+.+..+..||.+.+|... .++....+.|....+...|-.  ..+++++   .++.+
T Consensus      2242 ~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~ 2317 (2439)
T KOG1064|consen 2242 QVVCFRTAGN-SRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNV 2317 (2439)
T ss_pred             eEEEeeccCc-chhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcc
Confidence            3444555444 66666666  89999999999999999975 666666777888778888865  5666554   46789


Q ss_pred             EEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .+||..-......+...|.++ ++++++-|..+.+++||.+|.|.+||++..+.++.+
T Consensus      2318 ~lwDtl~~~~~s~v~~~H~~g-aT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2318 CLWDTLLPPMNSLVHTCHDGG-ATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred             cchhcccCcccceeeeecCCC-ceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence            999976544444444667776 999999999999999999999999999988766543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=2.4e-07  Score=63.54  Aligned_cols=113  Identities=19%  Similarity=0.243  Sum_probs=71.3

Q ss_pred             EEEecCCcEEE-EeCCCCeEEEEEccC-CceeeEEEecCCCeEEEEECCCCCEEEEec-CCCcEEEEEe--CCceEEEEE
Q psy11518         18 RSVAATSKLAA-SSGADETVVLYDMVK-RKQSGALMQHEGTITCLKFTPEGSHLISCS-DDGSIAIFRV--GSWQLEKLF   92 (139)
Q Consensus        18 ~~~~~~~~~l~-~~~~~~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~--~~~~~~~~~   92 (139)
                      ..+++||+.++ +.+.++...+|..+. +.....+..+........|+|+|+.++..+ .++...+|.+  .++......
T Consensus       245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt  324 (427)
T PRK02889        245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT  324 (427)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence            34555888776 567777766665432 223444444555556788999999887544 4556666654  444433332


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcCCC---eEEEEEcCCCcee
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGKDK---TLRTWNLVKGRSA  133 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~  133 (139)
                       .. ... ....+|+|+|++++..+.++   .|.+||+.+++..
T Consensus       325 -~~-g~~-~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~  365 (427)
T PRK02889        325 -FT-GSY-NTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT  365 (427)
T ss_pred             -cC-CCC-cCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence             12 112 44578999999988766543   6999999887654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.90  E-value=3.7e-07  Score=62.26  Aligned_cols=110  Identities=20%  Similarity=0.254  Sum_probs=73.3

Q ss_pred             EecCCcEEEEeCCC---CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCC--cEEEEEeCCceEEEEEE
Q psy11518         20 VAATSKLAASSGAD---ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDG--SIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        20 ~~~~~~~l~~~~~~---~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~   93 (139)
                      ++++++.++....+   ..|.+||+.+++... +..+...+.+++|+|+++.++ +.+.++  .|.+||+.++...... 
T Consensus       197 ~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~-  274 (417)
T TIGR02800       197 WSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLT-  274 (417)
T ss_pred             CCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECC-
Confidence            34488888766533   589999998875433 333455567789999998776 444444  5888898876654333 


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCC---CeEEEEEcCCCcee
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKD---KTLRTWNLVKGRSA  133 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~  133 (139)
                       .+... .....|+|+++.|+..+..   ..|.++|+.+++..
T Consensus       275 -~~~~~-~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~  315 (417)
T TIGR02800       275 -NGPGI-DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR  315 (417)
T ss_pred             -CCCCC-CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence             22222 4567899999988766542   36888888876643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497|consensus

Probab=98.90  E-value=1.4e-08  Score=65.71  Aligned_cols=115  Identities=14%  Similarity=0.212  Sum_probs=86.7

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEEEeCCceEEEEEE
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      ++..+++++|+++++++.- .+.|-|.++-+..+.+.. -..|..+-|..+..+++ ....++.|.+|++...+....+ 
T Consensus        11 ~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckI-   87 (447)
T KOG4497|consen   11 NPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKI-   87 (447)
T ss_pred             CCceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEe-
Confidence            4467788899999999865 788888877765444332 34577888988877665 5567889999999988877777 


Q ss_pred             eCCCCcceeEEEEccCCcEEE-EEcCCCeEEEEEcCCCcee
Q psy11518         94 KAHKGTAVNHISIHPSGKLAL-SVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~  133 (139)
                      .....+ +.+++|+|+|+.++ +...|-+|.+|.+.+.+..
T Consensus        88 deg~ag-ls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~  127 (447)
T KOG4497|consen   88 DEGQAG-LSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY  127 (447)
T ss_pred             ccCCCc-ceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence            333334 89999999997555 5557999999999886654

>KOG1240|consensus

Probab=98.89  E-value=4.3e-07  Score=67.41  Aligned_cols=125  Identities=14%  Similarity=0.238  Sum_probs=91.1

Q ss_pred             cceeeEEEEecCCcEEEEeCCCCeEEEEEccCC--cee-----------------e------------------------
Q psy11518         12 SHTASVRSVAATSKLAASSGADETVVLYDMVKR--KQS-----------------G------------------------   48 (139)
Q Consensus        12 ~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~--~~~-----------------~------------------------   48 (139)
                      +....+....+.+..+|+++.||.|++.+++..  +..                 .                        
T Consensus      1098 ~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~ 1177 (1431)
T KOG1240|consen 1098 GSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVS 1177 (1431)
T ss_pred             CCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEE
Confidence            344444455558889999999999999887641  000                 0                        


Q ss_pred             ----------E--EEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCC---cEE
Q psy11518         49 ----------A--LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG---KLA  113 (139)
Q Consensus        49 ----------~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l  113 (139)
                                +  .....+.|++++.+|.+++++.|...|.+.+||++=+.++.....++... +..++.+|-.   ...
T Consensus      1178 ~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~-i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1178 WDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAP-IRHVWLCPTYPQESVS 1256 (1431)
T ss_pred             ecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCC-cceEEeeccCCCCceE
Confidence                      0  00124578999999999999999999999999999888888886666644 8888888733   345


Q ss_pred             EEEc--CCCeEEEEEcCCCceeEEEe
Q psy11518        114 LSVG--KDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       114 ~~~~--~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++++  ..+.|.+|++.+|.....+-
T Consensus      1257 vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred             EEecccCCCceeeeecccCcceEEEE
Confidence            5444  46789999999997666543

>KOG1409|consensus

Probab=98.89  E-value=2.6e-08  Score=64.61  Aligned_cols=105  Identities=21%  Similarity=0.360  Sum_probs=83.2

Q ss_pred             EEEEeCCCCeEEEEEc--cCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeE
Q psy11518         26 LAASSGADETVVLYDM--VKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNH  103 (139)
Q Consensus        26 ~l~~~~~~~~v~i~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~  103 (139)
                      +...|...|.|..-.+  ..-.++.++.+|.+.+.+++|.+....+.+|..|..+.+||+....-+......|... |..
T Consensus       167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k-V~~  245 (404)
T KOG1409|consen  167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK-VQA  245 (404)
T ss_pred             EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhh-hhh
Confidence            4455666666655443  3446678889999999999999999999999999999999997666555443455555 888


Q ss_pred             EEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518        104 ISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus       104 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ++.-+--+.+.++++||.|.+||+....
T Consensus       246 l~~~~~t~~l~S~~edg~i~~w~mn~~r  273 (404)
T KOG1409|consen  246 LSYAQHTRQLISCGEDGGIVVWNMNVKR  273 (404)
T ss_pred             hhhhhhheeeeeccCCCeEEEEecccee
Confidence            8888888999999999999999997654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.89  E-value=4.3e-07  Score=62.32  Aligned_cols=111  Identities=18%  Similarity=0.240  Sum_probs=72.6

Q ss_pred             EEecCCcEEEEeCC---CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCC--cEEEEEeCCceEEEEE
Q psy11518         19 SVAATSKLAASSGA---DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDG--SIAIFRVGSWQLEKLF   92 (139)
Q Consensus        19 ~~~~~~~~l~~~~~---~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~   92 (139)
                      .++++|+.|+..+.   ...|.+|++.+++... +....+.+....|+|+|+.++ +...++  .|.++|+.++......
T Consensus       205 ~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt  283 (430)
T PRK00178        205 RWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT  283 (430)
T ss_pred             eECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcc
Confidence            44458888866542   2478899998875433 222333455789999999876 454555  5888899887654432


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcC-C--CeEEEEEcCCCcee
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGK-D--KTLRTWNLVKGRSA  133 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~  133 (139)
                        .+... .....|+||++.++..+. +  ..|.++|+.+++..
T Consensus       284 --~~~~~-~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~  324 (430)
T PRK00178        284 --NHPAI-DTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE  324 (430)
T ss_pred             --cCCCC-cCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence              22222 556789999998776553 3  35777888777643

>KOG1334|consensus

Probab=98.87  E-value=1.8e-08  Score=67.86  Aligned_cols=125  Identities=22%  Similarity=0.321  Sum_probs=98.2

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE-ecCCCeEEEEECC--CCCEEEEecCCCcEEEEEe
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTP--EGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~   83 (139)
                      ++.+|.+.+..+.|  .|..+++|+.|..|.+||...+++...+. +|...|..-.|-|  +.+.+++++.||++++=.+
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i  216 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI  216 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence            34578899999998  79999999999999999999988877765 6888888878888  4567899999999998776


Q ss_pred             CCceE-EEEEE-eCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCceeE
Q psy11518         84 GSWQL-EKLFK-KAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        84 ~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ..... ..... ..|.+. +.-++.-|+.. -+.++++|+.+.-+|++++.+.-
T Consensus       217 ~~t~~~e~t~rl~~h~g~-vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~  269 (559)
T KOG1334|consen  217 LETGYVENTKRLAPHEGP-VHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE  269 (559)
T ss_pred             ccccceecceecccccCc-cceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence            44332 21222 344444 89999999665 68899999999999999876543

>KOG2066|consensus

Probab=98.85  E-value=2.4e-07  Score=65.88  Aligned_cols=109  Identities=12%  Similarity=0.176  Sum_probs=81.5

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCC-----CCEEEEecCCCcEEEEEeCCce-EEEEEEeCC
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE-----GSHLISCSDDGSIAIFRVGSWQ-LEKLFKKAH   96 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~   96 (139)
                      +|+++++++.||.|.|..+-+.+...++.- .-++.+++++|+     .+.+++|+..| +.++.-+-.. .........
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG  159 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence            489999999999999999988887777664 457899999997     46788999888 6665532111 111121333


Q ss_pred             CCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         97 KGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        97 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      . ++|.++.|.  |.+++=++++| |++||+.+++.+..+.
T Consensus       160 e-G~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~  196 (846)
T KOG2066|consen  160 E-GPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIP  196 (846)
T ss_pred             c-cceEEEEec--CcEEEEecCCC-cEEEeccccceeeccC
Confidence            4 449999995  78888888887 8999999988876654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.83  E-value=5.5e-06  Score=55.44  Aligned_cols=111  Identities=14%  Similarity=0.250  Sum_probs=73.9

Q ss_pred             EEEEecCCcEEEEeC-CCCeEEEEEccC-CceeeE---EE--e--------cCCCeEEEEECCCCCEEEEec-CCCcEEE
Q psy11518         17 VRSVAATSKLAASSG-ADETVVLYDMVK-RKQSGA---LM--Q--------HEGTITCLKFTPEGSHLISCS-DDGSIAI   80 (139)
Q Consensus        17 v~~~~~~~~~l~~~~-~~~~v~i~~~~~-~~~~~~---~~--~--------~~~~v~~~~~~~~~~~l~~~~-~d~~i~~   80 (139)
                      -.++.+++++++++. .+|.|.++++.. +.....   +.  +        ......++.++|+++++++.. ....|.+
T Consensus        91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~  170 (345)
T PF10282_consen   91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV  170 (345)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred             EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence            345556888887776 589999999977 333222   11  0        124467899999999877653 3557999


Q ss_pred             EEeCCce--EE--EEEEeCCCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcC
Q psy11518         81 FRVGSWQ--LE--KLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLV  128 (139)
Q Consensus        81 ~d~~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~  128 (139)
                      |++....  +.  ..+..+ .+....++.|+|+++++++.. .++.|.+|++.
T Consensus       171 ~~~~~~~~~l~~~~~~~~~-~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  171 YDIDDDTGKLTPVDSIKVP-PGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             EEE-TTS-TEEEEEEEECS-TTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEeCCCceEEEeeccccc-cCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            9997654  32  233233 333389999999999876665 57889999998

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.81  E-value=5.3e-07  Score=61.89  Aligned_cols=115  Identities=13%  Similarity=0.147  Sum_probs=74.5

Q ss_pred             EEEecCCcEEEEeC-CCCeEEEEE--ccC-CceeeEEEecCCCeEEEEECCCCCEEEEecCC---CcEEEEEeCCceEEE
Q psy11518         18 RSVAATSKLAASSG-ADETVVLYD--MVK-RKQSGALMQHEGTITCLKFTPEGSHLISCSDD---GSIAIFRVGSWQLEK   90 (139)
Q Consensus        18 ~~~~~~~~~l~~~~-~~~~v~i~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~   90 (139)
                      .++++||+.|+..+ .++...+|.  +.. +.....+..+...+....|+|+|+.++....+   ..|.+||+.+++...
T Consensus       286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~  365 (428)
T PRK01029        286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ  365 (428)
T ss_pred             eEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE
Confidence            35666888766544 456555554  432 22334444444566788999999988755432   368999998887654


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcC---CCeEEEEEcCCCceeEE
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGK---DKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~  135 (139)
                      .. . ... .+....|+|||+.|+....   ...|.++|+..++....
T Consensus       366 Lt-~-~~~-~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L  410 (428)
T PRK01029        366 LT-T-SPE-NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI  410 (428)
T ss_pred             cc-C-CCC-CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            43 1 122 2677899999998775432   45688999988766543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.80  E-value=2.1e-06  Score=56.12  Aligned_cols=122  Identities=19%  Similarity=0.306  Sum_probs=83.4

Q ss_pred             EeecceeeEEEEecCCcEEEEeC-CCCeEEEEEccC-Ccee--eEEEecCCC----------eEEEEECCCCCEEEEecC
Q psy11518          9 VTHSHTASVRSVAATSKLAASSG-ADETVVLYDMVK-RKQS--GALMQHEGT----------ITCLKFTPEGSHLISCSD   74 (139)
Q Consensus         9 ~~~~~~~~v~~~~~~~~~l~~~~-~~~~v~i~~~~~-~~~~--~~~~~~~~~----------v~~~~~~~~~~~l~~~~~   74 (139)
                      ...++.-.-.++..++++++++. ..|.|.++.+.. |...  .....|.+.          +....+.|+++++++.+-
T Consensus        85 ~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL  164 (346)
T COG2706          85 TLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL  164 (346)
T ss_pred             ccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence            33344333345555888888776 467999999865 4322  122234444          788899999999987754


Q ss_pred             -CCcEEEEEeCCceEEEEEEe-CCCCcceeEEEEccCCcEEEEEcC-CCeEEEEEcCCC
Q psy11518         75 -DGSIAIFRVGSWQLEKLFKK-AHKGTAVNHISIHPSGKLALSVGK-DKTLRTWNLVKG  130 (139)
Q Consensus        75 -d~~i~~~d~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~  130 (139)
                       -..|.+|++..+.+...-.. ...+.-...|.|+|++++..+..+ +++|.+|.....
T Consensus       165 G~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         165 GTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             CCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence             34699999987765432211 122333799999999999888876 899999998773

>KOG4714|consensus

Probab=98.80  E-value=3.7e-08  Score=61.81  Aligned_cols=105  Identities=18%  Similarity=0.249  Sum_probs=76.1

Q ss_pred             EEec-CCcEEEEeCCCCeEEEEEccCCc-eeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCceEEEEEE--
Q psy11518         19 SVAA-TSKLAASSGADETVVLYDMVKRK-QSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQLEKLFK--   93 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~~~v~i~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--   93 (139)
                      |..| ..+.+++|+.||.+.+||.+... +...++.|+.+++.+-|+| ++..|++++.||.+.-||..+.. +..-.  
T Consensus       186 ~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~-l~i~~~~  264 (319)
T KOG4714|consen  186 CSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTF-LSISNQA  264 (319)
T ss_pred             hCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCce-EEecCcc
Confidence            3334 77789999999999999998764 4456778999999999999 68899999999999999976321 11100  


Q ss_pred             ---------------------eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         94 ---------------------KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        94 ---------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                                           .+.....|.+  |.--|..+++|++-+.|++++
T Consensus       265 s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  265 SVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             ccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEec
Confidence                                 0111111333  444688899999988888865

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.79  E-value=4.5e-07  Score=62.55  Aligned_cols=70  Identities=19%  Similarity=0.298  Sum_probs=55.1

Q ss_pred             ceeeEEEEe--cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518         13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        13 ~~~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      ....+.|++  ++.+.++.|+.||+|.+||...+....  ....-..+.++|+|+|..+++|+..|.+.+||+.
T Consensus       258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~--~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A  329 (545)
T PF11768_consen  258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL--AKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA  329 (545)
T ss_pred             cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee--eeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence            344455555  488999999999999999986663332  2334456899999999999999999999999974

>KOG4532|consensus

Probab=98.78  E-value=6e-07  Score=56.80  Aligned_cols=105  Identities=11%  Similarity=0.013  Sum_probs=75.4

Q ss_pred             EEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc-eEEEE-EEeCCCCcceeEE
Q psy11518         27 AASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW-QLEKL-FKKAHKGTAVNHI  104 (139)
Q Consensus        27 l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~-~~~~~~~~~v~~~  104 (139)
                      +..++.|.++++.+++.+.....+.-..-.+.++.++++++++++.+....|-.|.+... +.+.. ...+.... -.+.
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~-gF~~  209 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH-GFYN  209 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC-ceee
Confidence            555677777777777655433333222223788999999999999999999999988653 33332 32233333 5778


Q ss_pred             EEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518        105 SIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus       105 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      .|+.+...++++..||.+.|||+|....
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~t  237 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNMAT  237 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEeccccc
Confidence            9999999999999999999999987543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.77  E-value=1.3e-06  Score=60.39  Aligned_cols=111  Identities=19%  Similarity=0.327  Sum_probs=71.6

Q ss_pred             EEecCCcEEEEeCC-C--CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCc--EEEEEeCCceEEEEE
Q psy11518         19 SVAATSKLAASSGA-D--ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGS--IAIFRVGSWQLEKLF   92 (139)
Q Consensus        19 ~~~~~~~~l~~~~~-~--~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~~~~~~~   92 (139)
                      .+++||+.|+..+. +  ..|.++|+.+++... +..........+|+|+++.++ +.+.++.  |.++|+.+++.....
T Consensus       224 ~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt  302 (448)
T PRK04792        224 AWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRIT  302 (448)
T ss_pred             eECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECc
Confidence            44558888776532 2  368888988776432 222223345779999999876 4555664  777888877654433


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcC-C--CeEEEEEcCCCcee
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGK-D--KTLRTWNLVKGRSA  133 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~  133 (139)
                        .+... ....+|+||+++++..+. +  ..|.++|+.+++..
T Consensus       303 --~~~~~-~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        303 --RHRAI-DTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             --cCCCC-ccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence              22222 567899999998876553 3  45777788777654

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.76  E-value=4e-06  Score=55.94  Aligned_cols=110  Identities=12%  Similarity=0.181  Sum_probs=81.3

Q ss_pred             CCcEEEEeCCCCeEEEEEccCC-----ceeeEEEe-------cCCCeEEEEECCCCCEEEEec----------CCCcEEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKR-----KQSGALMQ-------HEGTITCLKFTPEGSHLISCS----------DDGSIAI   80 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~-----~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~   80 (139)
                      ++.++.+..+ |.|.+.|+...     +....+..       ..+...-++++|+++.+....          ..+.|.+
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            7777777776 99999995432     32322211       223344589999988887642          2247999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCc-EEEEEc-CCCeEEEEEcCCCceeEEE
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-LALSVG-KDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~~  136 (139)
                      +|..+++.+..+....   .+..++++||++ ++++.. .++.|.++|..+++.+..+
T Consensus       284 iD~~t~kvi~~i~vG~---~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       284 VDAKTGKRLRKIELGH---EIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EECCCCeEEEEEeCCC---ceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            9999999998885443   388999999999 887666 5788999999999998876

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4714|consensus

Probab=98.75  E-value=1.1e-08  Score=64.00  Aligned_cols=74  Identities=20%  Similarity=0.388  Sum_probs=60.5

Q ss_pred             CCeEEEEECCC-CCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCC
Q psy11518         55 GTITCLKFTPE-GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        55 ~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ..|++++-+|. ...+++|+.||.+.+||.++...+..+-..|+.. ++.+-|+| ++..|+++++||.+.-||..+
T Consensus       180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~-i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE-IWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-hhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            34888888885 4566788999999999999886665554556655 99999999 667999999999999999864

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.75  E-value=2.2e-06  Score=58.55  Aligned_cols=110  Identities=20%  Similarity=0.269  Sum_probs=72.3

Q ss_pred             EEecCCcEEE-EeCCCC--eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC-CC--cEEEEEeCCceEEEEE
Q psy11518         19 SVAATSKLAA-SSGADE--TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD-DG--SIAIFRVGSWQLEKLF   92 (139)
Q Consensus        19 ~~~~~~~~l~-~~~~~~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~   92 (139)
                      .++++++.|+ +...++  .|.+|++.++.. ..+..+........|+|+++.++..+. .+  .|.++|+.+++.....
T Consensus       240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~  318 (417)
T TIGR02800       240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT  318 (417)
T ss_pred             EECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee
Confidence            4445887665 444444  588888877643 333334444456789999998865443 33  5777887766644332


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcCCC---eEEEEEcCCCce
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGKDK---TLRTWNLVKGRS  132 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~  132 (139)
                        .+... .....|+|++++++.++.++   .|.+||+.++..
T Consensus       319 --~~~~~-~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~  358 (417)
T TIGR02800       319 --FRGGY-NASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE  358 (417)
T ss_pred             --cCCCC-ccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe
Confidence              12222 66789999999998887665   799999987654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.71  E-value=2.8e-06  Score=58.42  Aligned_cols=115  Identities=20%  Similarity=0.258  Sum_probs=67.5

Q ss_pred             EEEecCCcEEEEeC-C----CCeEEEEEccCC---ceeeEEEecCCCeEEEEECCCCCEEEEe-cCCCcEEEEE--eCC-
Q psy11518         18 RSVAATSKLAASSG-A----DETVVLYDMVKR---KQSGALMQHEGTITCLKFTPEGSHLISC-SDDGSIAIFR--VGS-   85 (139)
Q Consensus        18 ~~~~~~~~~l~~~~-~----~~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d--~~~-   85 (139)
                      ..+++||+.|+..+ .    +-.+..|++..+   +...............+|+|+|+.++.. ..+|...+|.  +.. 
T Consensus       236 p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~  315 (428)
T PRK01029        236 PTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPE  315 (428)
T ss_pred             eEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccc
Confidence            35566898777543 2    223445676542   3222222222334677999999987754 4566555554  432 


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcC---CCeEEEEEcCCCceeE
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGK---DKTLRTWNLVKGRSAY  134 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~  134 (139)
                      +.....+ ..... .+....|+|||+.|+..+.   ...|.+||+.+++...
T Consensus       316 g~~~~~l-t~~~~-~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~  365 (428)
T PRK01029        316 GQSPRLL-TKKYR-NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ  365 (428)
T ss_pred             ccceEEe-ccCCC-CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE
Confidence            2222223 12222 2677899999998886654   2469999998887643

>KOG4497|consensus

Probab=98.70  E-value=6.5e-07  Score=58.17  Aligned_cols=97  Identities=18%  Similarity=0.295  Sum_probs=72.4

Q ss_pred             EEEec--CCcE-EEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCE-EEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         18 RSVAA--TSKL-AASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH-LISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        18 ~~~~~--~~~~-l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .-+.|  +..+ +.....++.|.+|++...+-...++....++..++|+|+|+. |.+...+-.|.+|.+.+......  
T Consensus        52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~--  129 (447)
T KOG4497|consen   52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL--  129 (447)
T ss_pred             hheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe--
Confidence            33444  4444 445567889999999888777777777889999999999965 55777899999999987654332  


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEc
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVG  117 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~  117 (139)
                       .+....+-.++|+|+|++.+..+
T Consensus       130 -~~pK~~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen  130 -PHPKTNVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             -cccccCceeEEECCCCceeeeee
Confidence             23322368899999999987665

>KOG0309|consensus

Probab=98.69  E-value=9.3e-08  Score=67.77  Aligned_cols=126  Identities=18%  Similarity=0.252  Sum_probs=94.1

Q ss_pred             EEEEeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-ceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEE
Q psy11518          6 QTFVTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKR-KQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAI   80 (139)
Q Consensus         6 ~~~~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~   80 (139)
                      -.|..++|...++.+.|   ....+++++.|..+..||+.+. .++.........-+.+.|+. ++..+| .+....|.+
T Consensus       106 Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vla-sshg~~i~v  184 (1081)
T KOG0309|consen  106 IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLA-SSHGNDIFV  184 (1081)
T ss_pred             eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhh-hccCCceEE
Confidence            35677899999999998   5567999999999999999875 56666666566668999987 444444 445557999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      ||.+.+......-..+... +..++|+. -...+.+.+.|+.|..||.......
T Consensus       185 wd~r~gs~pl~s~K~~vs~-vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  185 WDLRKGSTPLCSLKGHVSS-VNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             EeccCCCcceEEeccccee-eehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence            9998876554442444443 88888876 3346788899999999998765443

>KOG3914|consensus

Probab=98.67  E-value=6.3e-08  Score=63.67  Aligned_cols=81  Identities=16%  Similarity=0.219  Sum_probs=65.0

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEE-EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGAL-MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      -||...++++.+  |+++++++..|..|++-.......+..+ -||+..|..++.-++. .|++++.|++|++||+.+++
T Consensus       148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCC
Confidence            367777777776  9999999999999998877655444443 4799999999987654 48999999999999999988


Q ss_pred             EEEEE
Q psy11518         88 LEKLF   92 (139)
Q Consensus        88 ~~~~~   92 (139)
                      .+..+
T Consensus       227 ~L~t~  231 (390)
T KOG3914|consen  227 LLDTC  231 (390)
T ss_pred             ccccc
Confidence            76544

>KOG4532|consensus

Probab=98.67  E-value=7e-06  Score=52.14  Aligned_cols=117  Identities=12%  Similarity=0.072  Sum_probs=83.1

Q ss_pred             ecCCcEEEEeCCCCeEEEEEccCC-ceeeE--EEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE---EEEe
Q psy11518         21 AATSKLAASSGADETVVLYDMVKR-KQSGA--LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK---LFKK   94 (139)
Q Consensus        21 ~~~~~~l~~~~~~~~v~i~~~~~~-~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~---~~~~   94 (139)
                      +.+++++++.+....|-.|.+... +.+..  .......-.+.+|+.....+|++..||.+.+||++.....-   ....
T Consensus       167 snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstr  246 (344)
T KOG4532|consen  167 SNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTR  246 (344)
T ss_pred             cCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccC
Confidence            348889999998899999988654 22222  22222333688999999999999999999999998754321   1123


Q ss_pred             CCCCcceeEEEEccCCc--EEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         95 AHKGTAVNHISIHPSGK--LALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +++.+.+..+.|++-|.  +|+..-.-+.+++-|+|+++..+.+-
T Consensus       247 p~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~  291 (344)
T KOG4532|consen  247 PHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV  291 (344)
T ss_pred             CCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence            44444499999998664  44444455789999999998877654

>KOG0644|consensus

Probab=98.66  E-value=1.2e-07  Score=67.96  Aligned_cols=107  Identities=15%  Similarity=0.173  Sum_probs=90.2

Q ss_pred             EEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEE
Q psy11518         26 LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHI  104 (139)
Q Consensus        26 ~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~  104 (139)
                      +.+++-.+..+++|++.++...+.+.+|...+..+.++| +.+...+++.||...+||+-.+.++..+..+ +.. +..-
T Consensus       367 ~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h~k-l~d~  444 (1113)
T KOG0644|consen  367 IVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-HGK-LVDG  444 (1113)
T ss_pred             cceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-cce-eecc
Confidence            445555677899999999999999999999999999999 4555568899999999999999999888644 433 7889


Q ss_pred             EEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518        105 SIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus       105 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      .|+++|..++....-|.+.|.....++...
T Consensus       445 kFSqdgts~~lsd~hgql~i~g~gqs~s~k  474 (1113)
T KOG0644|consen  445 KFSQDGTSIALSDDHGQLYILGTGQSKSQK  474 (1113)
T ss_pred             ccCCCCceEecCCCCCceEEeccCCCcccc
Confidence            999999999999999999999887776554

>KOG4640|consensus

Probab=98.66  E-value=4e-07  Score=63.34  Aligned_cols=80  Identities=21%  Similarity=0.299  Sum_probs=68.5

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ..+..+.|+|.-..+|++..+|.+.+..+. ++.++.+..+.... ..+++|.|||+.+++|-.||+|++-|..++..+.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v-~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENV-TASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCcc-ceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            457788999999999999999999999988 78888884343332 3499999999999999999999999999998887


Q ss_pred             EE
Q psy11518        135 IT  136 (139)
Q Consensus       135 ~~  136 (139)
                      ..
T Consensus        99 ~~  100 (665)
T KOG4640|consen   99 SF  100 (665)
T ss_pred             cc
Confidence            63

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.65  E-value=2.8e-06  Score=58.36  Aligned_cols=95  Identities=17%  Similarity=0.221  Sum_probs=65.2

Q ss_pred             eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC---CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc
Q psy11518         35 TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD---GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK  111 (139)
Q Consensus        35 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  111 (139)
                      .|.++|.+.+. ...+..+...+...+|+|+|+.++..+.+   ..|.+||+.++......  ...+. ....+|+|||+
T Consensus       180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--~~~g~-~~~~~~SpDG~  255 (430)
T PRK00178        180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--NFEGL-NGAPAWSPDGS  255 (430)
T ss_pred             EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--CCCCC-cCCeEECCCCC
Confidence            47777876544 44455566778899999999988765433   35889999887654433  12222 55689999999


Q ss_pred             EEEE-EcCCC--eEEEEEcCCCcee
Q psy11518        112 LALS-VGKDK--TLRTWNLVKGRSA  133 (139)
Q Consensus       112 ~l~~-~~~d~--~i~i~d~~~~~~~  133 (139)
                      .++. ...++  .|.+||+.+++..
T Consensus       256 ~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        256 KLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             EEEEEEccCCCceEEEEECCCCCeE
Confidence            8764 44444  6888899887654

>KOG1354|consensus

Probab=98.64  E-value=1.4e-06  Score=56.96  Aligned_cols=113  Identities=20%  Similarity=0.361  Sum_probs=79.9

Q ss_pred             eeEEEEec--CCcEEEEeCCCCeEEEEEccCCc-----eeeEEEec------------CCCeEEEEECCCC--CEEEEec
Q psy11518         15 ASVRSVAA--TSKLAASSGADETVVLYDMVKRK-----QSGALMQH------------EGTITCLKFTPEG--SHLISCS   73 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~-----~~~~~~~~------------~~~v~~~~~~~~~--~~l~~~~   73 (139)
                      .-+.++.|  .|++|++|..+|.|.+|.-....     ....++.|            ...|..+.|.+++  ..++...
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            45667777  89999999999999999754322     23334444            3368889998854  4567778


Q ss_pred             CCCcEEEEEeCCce-----------------------------------EEEEEEeCCCCcceeEEEEccCCcEEEEEcC
Q psy11518         74 DDGSIAIFRVGSWQ-----------------------------------LEKLFKKAHKGTAVNHISIHPSGKLALSVGK  118 (139)
Q Consensus        74 ~d~~i~~~d~~~~~-----------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  118 (139)
                      .|.+|++|.++...                                   +.+.+...|.-. |.+++++.|++.++++. 
T Consensus       106 NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyh-iNSIS~NsD~Et~lSAD-  183 (433)
T KOG1354|consen  106 NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYH-INSISVNSDKETFLSAD-  183 (433)
T ss_pred             CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeE-eeeeeecCccceEeecc-
Confidence            89999999875321                                   122333444444 89999999999888775 


Q ss_pred             CCeEEEEEcCC
Q psy11518        119 DKTLRTWNLVK  129 (139)
Q Consensus       119 d~~i~i~d~~~  129 (139)
                      |-+|.+|+++-
T Consensus       184 dLRINLWnlei  194 (433)
T KOG1354|consen  184 DLRINLWNLEI  194 (433)
T ss_pred             ceeeeeccccc
Confidence            67899999863

>KOG1275|consensus

Probab=98.63  E-value=3.1e-07  Score=66.41  Aligned_cols=121  Identities=17%  Similarity=0.324  Sum_probs=90.3

Q ss_pred             eeeEEEEEeecceeeEEEEecCCcEEEEeC---------CCCeEEEEEccCCceeeEEEecCCCeEEEEECCC-CCEEEE
Q psy11518          2 YTLTQTFVTHSHTASVRSVAATSKLAASSG---------ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE-GSHLIS   71 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~---------~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~   71 (139)
                      ++.++++.  .|.+.+.++...|+.|++++         .|..|+|||++..+.+.-+.-+.++ .-+.|.|. ...++.
T Consensus       207 ~~~iht~~--aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V  283 (1118)
T KOG1275|consen  207 FETIHTFD--AHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAV  283 (1118)
T ss_pred             Cceeeeee--ccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEE
Confidence            34455555  68889999988999999887         4667999999988777665555444 56788885 457888


Q ss_pred             ecCCCcEEEEE---eCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         72 CSDDGSIAIFR---VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        72 ~~~d~~i~~~d---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      ++..|...+-|   +.+......+..+. +..+..++++++++.++.+..+|.|.+|.
T Consensus       284 ~S~sGq~q~vd~~~lsNP~~~~~~v~p~-~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  284 TSQSGQFQFVDTATLSNPPAGVKMVNPN-GSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             EecccceeeccccccCCCccceeEEccC-CCcceeEEecCCCceEEEecccCcEeeec
Confidence            88899999988   43332222221222 23389999999999999999999999997

>KOG4190|consensus

Probab=98.61  E-value=2.1e-07  Score=64.36  Aligned_cols=128  Identities=14%  Similarity=0.211  Sum_probs=91.8

Q ss_pred             EEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEe--cCCCeEEEEECC--CCCEE-EEecCCCcE
Q psy11518          6 QTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQ--HEGTITCLKFTP--EGSHL-ISCSDDGSI   78 (139)
Q Consensus         6 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~--~~~~l-~~~~~d~~i   78 (139)
                      ..|..+.|..+|.++.+  +.++++  +.|+-|++||+--++++.....  ..+.+..+..-+  +...+ +.++...++
T Consensus       776 CQfTY~aHkk~i~~igfL~~lr~i~--ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTV  853 (1034)
T KOG4190|consen  776 CQFTYQAHKKPIHDIGFLADLRSIA--SCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTV  853 (1034)
T ss_pred             eeeEhhhccCcccceeeeeccceee--eccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhh
Confidence            45666788888999888  444554  5688999999988877764321  122333333333  34444 444778899


Q ss_pred             EEEEeCCceEEEEEEeCCCC---cceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         79 AIFRVGSWQLEKLFKKAHKG---TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      +++|.+..+....+......   .-+.+++..+.|++++.+=..|.|.+.|.++|+.+..
T Consensus       854 Kl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINs  913 (1034)
T KOG4190|consen  854 KLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINS  913 (1034)
T ss_pred             eeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceecc
Confidence            99999988876666443222   2378999999999999999999999999999997764

>KOG1912|consensus

Probab=98.60  E-value=7.5e-07  Score=63.63  Aligned_cols=127  Identities=16%  Similarity=0.217  Sum_probs=94.4

Q ss_pred             EEeecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCC------------CEEEEecC
Q psy11518          8 FVTHSHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEG------------SHLISCSD   74 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~   74 (139)
                      +....+...-.++.| .+.+++-|+ ...|.+-|..+.+.+..+..|...|+.+.|.|..            -.+|+++.
T Consensus         9 lpG~l~~sN~~A~Dw~~~GLiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~   87 (1062)
T KOG1912|consen    9 LPGPLSRSNRNAADWSPSGLIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI   87 (1062)
T ss_pred             CCCCCCcccccccccCccceEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence            333334444555666 344555555 4678899999999999999999999999998731            14678888


Q ss_pred             CCcEEEEEeCCceEEEEEEeCCCCcceeEEEEcc---CC-cEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         75 DGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP---SG-KLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        75 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .|.|.+||...+..+..+  .+...++..++|-+   +. ..+++......+.+||..+|+....+.
T Consensus        88 ~GrIil~d~~~~s~~~~l--~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~  152 (1062)
T KOG1912|consen   88 SGRIILVDFVLASVINWL--SHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD  152 (1062)
T ss_pred             cCcEEEEEehhhhhhhhh--cCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccc
Confidence            999999999988777776  33333488888876   33 467777888899999999999887654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.59  E-value=5.6e-06  Score=56.43  Aligned_cols=96  Identities=13%  Similarity=0.152  Sum_probs=75.7

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCC----cEEEEEeCCceEEEEEEe
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG----SIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~~~~~~~~~~~   94 (139)
                      .++++|++++++.....+.+.|++++.....-+...+-|+...|+|+++++|-+-.+|    .|+++|..+++...... 
T Consensus       408 ~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-  486 (668)
T COG4946         408 KVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-  486 (668)
T ss_pred             EEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-
Confidence            3445999999999999999999999988777667778899999999999999887776    48999999877665541 


Q ss_pred             CCCCcceeEEEEccCCcEEEEEc
Q psy11518         95 AHKGTAVNHISIHPSGKLALSVG  117 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~~~~  117 (139)
                      +. .. -.+-+|.|++++|.--+
T Consensus       487 ~t-a~-DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         487 PT-AY-DFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             Cc-cc-ccCcccCCCCcEEEEEe
Confidence            21 11 35578999999776443

>KOG3621|consensus

Probab=98.58  E-value=9e-07  Score=62.31  Aligned_cols=116  Identities=13%  Similarity=0.100  Sum_probs=86.4

Q ss_pred             eeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEE-ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE
Q psy11518         14 TASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        14 ~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      ....+|+.-.+++++.|+..|.+.+|+-..+.....-. +-.+.+..+..+++..++|.|+..|.|.++.++...+....
T Consensus        35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~  114 (726)
T KOG3621|consen   35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLD  114 (726)
T ss_pred             eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcce
Confidence            34566777789999999999999999976665443322 23344556678888888999999999999988764322111


Q ss_pred             --E--eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         93 --K--KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        93 --~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                        .  ...+...|++++|++++..+++|...|+|..-.+.+
T Consensus       115 ~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  115 YVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence              1  111244599999999999999999999999887766

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=9.7e-06  Score=56.12  Aligned_cols=112  Identities=20%  Similarity=0.237  Sum_probs=70.6

Q ss_pred             EEEecCCcEEEE-eCCCC--eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec-CCC--cEEEEEeCCceEEEE
Q psy11518         18 RSVAATSKLAAS-SGADE--TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS-DDG--SIAIFRVGSWQLEKL   91 (139)
Q Consensus        18 ~~~~~~~~~l~~-~~~~~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~~~d~~~~~~~~~   91 (139)
                      ..++++|+.|+. ...++  .|.++|+.+++. ..+..+.......+|+|+++.++..+ .++  .|.++|+.+++....
T Consensus       267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L  345 (448)
T PRK04792        267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL  345 (448)
T ss_pred             eeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE
Confidence            345568887764 45555  477778876654 33444545567789999999876543 344  466677777665443


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcC-CC--eEEEEEcCCCcee
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGK-DK--TLRTWNLVKGRSA  133 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~  133 (139)
                      . .. ... ....+|+|||++++..+. ++  .|.++|+.+++..
T Consensus       346 t-~~-g~~-~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~  387 (448)
T PRK04792        346 T-FE-GEQ-NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ  387 (448)
T ss_pred             e-cC-CCC-CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE
Confidence            3 11 111 345789999998877654 33  4666788877653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.55  E-value=2.6e-05  Score=49.76  Aligned_cols=84  Identities=14%  Similarity=0.230  Sum_probs=56.6

Q ss_pred             CCCeEEEEECCCCCEEEEecCC-C----------cEEEEEeCCceEE---------------------EEE------EeC
Q psy11518         54 EGTITCLKFTPEGSHLISCSDD-G----------SIAIFRVGSWQLE---------------------KLF------KKA   95 (139)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d-~----------~i~~~d~~~~~~~---------------------~~~------~~~   95 (139)
                      ...|.++.|+|..++|+.|+.. .          -+..|.+-++.+-                     ...      ...
T Consensus       147 p~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~  226 (282)
T PF15492_consen  147 PHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQG  226 (282)
T ss_pred             CCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccc
Confidence            4478899999988888766531 1          2556665322110                     000      011


Q ss_pred             CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         96 HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .....|..|..+|||+.|++...+|.|.+|++.+-+.+....
T Consensus       227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            123338999999999999999999999999998877665543

>KOG4640|consensus

Probab=98.55  E-value=9.7e-07  Score=61.51  Aligned_cols=91  Identities=14%  Similarity=0.089  Sum_probs=72.7

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeE-EEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTIT-CLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .....+.|.-.++|.+..+|.|.+..+. .+.+.+++.+...++ +++|.|+|+.+|.|-.||+|++.|+.++..+....
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~  101 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFL  101 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccc
Confidence            3445555677789999999999999987 778888887777777 99999999999999999999999999887766642


Q ss_pred             eCCCCcceeEEEEc
Q psy11518         94 KAHKGTAVNHISIH  107 (139)
Q Consensus        94 ~~~~~~~v~~~~~~  107 (139)
                       .....+|..+-|.
T Consensus       102 -~s~e~~is~~~w~  114 (665)
T KOG4640|consen  102 -FSVETDISKGIWD  114 (665)
T ss_pred             -cccccchheeecc
Confidence             2222336777775

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.53  E-value=4.2e-06  Score=52.83  Aligned_cols=114  Identities=11%  Similarity=0.038  Sum_probs=78.4

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCC-CCcc-
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH-KGTA-  100 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~-  100 (139)
                      ++..+++++.++.|..||..+++.+..+.. ...+.... ...+..++.+..++.+..+|..+++.++...... .... 
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~  112 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGV  112 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCST
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeecccccccccc
Confidence            677777778999999999999999888775 22211111 1244556666677899999999999998842222 1110 


Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ........++..++.+..++.|..+|+++|+.+....+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen  113 RSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             B--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred             ccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence            12222333477888888899999999999999877654

...

>KOG1832|consensus

Probab=98.53  E-value=5.8e-08  Score=70.16  Aligned_cols=119  Identities=12%  Similarity=0.101  Sum_probs=91.5

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCc--EEEEEeCCce
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGS--IAIFRVGSWQ   87 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~~~d~~~~~   87 (139)
                      .+....+|+.|  +.+.|+.|+..|.|++|++.+|........|.+.|+.+.-+.+|..+++.+....  ..+|+.... 
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~- 1177 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST- 1177 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc-
Confidence            45677788887  7889999999999999999999999999999999999999989988776655433  568987541 


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                          +...|.-..-.++.|+...+.-+.|.......+||+.++.++..
T Consensus      1178 ----~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1178 ----GGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred             ----cCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHH
Confidence                11222222246688887767677777777899999999877654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.50  E-value=1.3e-05  Score=54.22  Aligned_cols=109  Identities=8%  Similarity=-0.060  Sum_probs=76.7

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      .+..+++++.++.+..+|.++++.+......  ......  ..+..++.++.+|.+..+|..+++.++......... ..
T Consensus       240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~-~s  314 (377)
T TIGR03300       240 DGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQ-LT  314 (377)
T ss_pred             ECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCc-cc
Confidence            4557777888999999999999887765421  111222  245677788889999999999998877652111111 22


Q ss_pred             EEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        103 HISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ....  .+..+++++.+|.++++|..+++.+..+++
T Consensus       315 sp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~  348 (377)
T TIGR03300       315 APAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT  348 (377)
T ss_pred             cCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            2222  356888899999999999999999887653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG1354|consensus

Probab=98.49  E-value=4.3e-06  Score=54.74  Aligned_cols=125  Identities=20%  Similarity=0.319  Sum_probs=85.3

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCcee---eEEEe-----cCCCeEEEEECC-CCCEEEEecCCCcEE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQS---GALMQ-----HEGTITCLKFTP-EGSHLISCSDDGSIA   79 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~---~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~d~~i~   79 (139)
                      +.|...+.+++.  |.+.++++. |-.|.+|+++-...-   ...+.     -..-|++..|+| ..+.++-.+..|.|+
T Consensus       161 NaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr  239 (433)
T KOG1354|consen  161 NAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR  239 (433)
T ss_pred             ccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence            468888999998  666666654 678999998643221   11121     234578888999 467788888899999


Q ss_pred             EEEeCCceEEE----EEEeCC----------CCcceeEEEEccCCcEEEEEcCCCeEEEEEc-CCCceeEEEe
Q psy11518         80 IFRVGSWQLEK----LFKKAH----------KGTAVNHISIHPSGKLALSVGKDKTLRTWNL-VKGRSAYITN  137 (139)
Q Consensus        80 ~~d~~~~~~~~----~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~  137 (139)
                      +-|++...+-.    .+..+.          --..|..+.|+++|+++++-.. -+|.+||+ ...+++..+.
T Consensus       240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~  311 (433)
T KOG1354|consen  240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYP  311 (433)
T ss_pred             EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEe
Confidence            99998543211    111111          1123889999999999987664 47999999 6667766554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.48  E-value=1.9e-05  Score=53.37  Aligned_cols=108  Identities=15%  Similarity=0.099  Sum_probs=77.6

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      .+..+++++.++.|..+|..+++.+...............  ++..++.++.++.+..+|..+++.++.......   +.
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~---~~  138 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE---VL  138 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCce---ee
Confidence            5778888889999999999999988776543322122222  466778888899999999999998887633221   21


Q ss_pred             E-EEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518        103 H-ISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       103 ~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      + ...  .+..++.++.++.+..||.++|+.+....
T Consensus       139 ~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  172 (377)
T TIGR03300       139 SPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYS  172 (377)
T ss_pred             cCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEc
Confidence            1 112  34567777889999999999998876653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=98.47  E-value=0.00011  Score=49.24  Aligned_cols=117  Identities=12%  Similarity=0.232  Sum_probs=78.3

Q ss_pred             eeEEEEecCCcEEEEeCC----CCeEEEEEccCC----ceeeEEEecCCCeEEEEECCCCCEEEEec-CCCcEEEEEeCC
Q psy11518         15 ASVRSVAATSKLAASSGA----DETVVLYDMVKR----KQSGALMQHEGTITCLKFTPEGSHLISCS-DDGSIAIFRVGS   85 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~----~~~v~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~   85 (139)
                      ..-.++.+++++|++..+    ++.|..|.+...    +.+............++++|++++++++. .+|.+.++++..
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            344556668888888766    579999998764    23333443445567899999999998776 488999999987


Q ss_pred             -ceEEEEEE-eC----------CCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcCCCc
Q psy11518         86 -WQLEKLFK-KA----------HKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLVKGR  131 (139)
Q Consensus        86 -~~~~~~~~-~~----------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~  131 (139)
                       +....... ..          ....-+.++.++|+++++++.. ....|.+|++....
T Consensus       119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~  177 (345)
T PF10282_consen  119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT  177 (345)
T ss_dssp             TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred             CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence             44333211 10          1222277899999999887764 35579999998765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1645|consensus

Probab=98.45  E-value=1.8e-06  Score=57.34  Aligned_cols=94  Identities=14%  Similarity=0.067  Sum_probs=71.6

Q ss_pred             EEEEEccCCceeeEEEecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc-EE
Q psy11518         36 VVLYDMVKRKQSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-LA  113 (139)
Q Consensus        36 v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l  113 (139)
                      +++.+..+.+...-+..+...|..++|+|..+ ++..++.+..|++.|+++......+ ..+  .++++++|.-|.. ++
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy-~a~--~~~wSC~wDlde~h~I  251 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY-IAY--NQIWSCCWDLDERHVI  251 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe-ecc--CCceeeeeccCCccee
Confidence            44444444444445566778899999999766 6778899999999999998887777 344  3389999998766 66


Q ss_pred             EEEcCCCeEEEEEcCCCce
Q psy11518        114 LSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus       114 ~~~~~d~~i~i~d~~~~~~  132 (139)
                      ..|-..|.|.|||+++.+.
T Consensus       252 YaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  252 YAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             EEeccCceEEEEEccCCCc
Confidence            6677899999999997643

>smart00320 WD40 WD40 repeats

Probab=98.44  E-value=1.5e-06  Score=38.10  Aligned_cols=38  Identities=37%  Similarity=0.675  Sum_probs=33.2

Q ss_pred             ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         45 KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      ++...+..|...+.++.|++++..+++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44566777888999999999989999999999999986

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.40  E-value=0.00019  Score=49.43  Aligned_cols=112  Identities=14%  Similarity=0.133  Sum_probs=70.8

Q ss_pred             EEEecCCcE-EEE-eCC--CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCC--CcEEEEEeCCceEEE
Q psy11518         18 RSVAATSKL-AAS-SGA--DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDD--GSIAIFRVGSWQLEK   90 (139)
Q Consensus        18 ~~~~~~~~~-l~~-~~~--~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d--~~i~~~d~~~~~~~~   90 (139)
                      ..++++|+. ++. ...  +..|.++|+.+++...... ..+......|+|+|+.++ +.+.+  ..|.++|+..+....
T Consensus       193 p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~  271 (419)
T PRK04043        193 PKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ  271 (419)
T ss_pred             EEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE
Confidence            445558874 443 332  4679999998876544333 445556778999998775 34333  468888887776544


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcC-C--CeEEEEEcCCCcee
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGK-D--KTLRTWNLVKGRSA  133 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~i~d~~~~~~~  133 (139)
                      ..  ..... .....|+|||+.|+..+. .  ..|.+.|+.+++..
T Consensus       272 LT--~~~~~-d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~  314 (419)
T PRK04043        272 IT--NYPGI-DVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE  314 (419)
T ss_pred             cc--cCCCc-cCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            33  22221 334679999987766553 2  26888888877653

>KOG3617|consensus

Probab=98.38  E-value=1.5e-06  Score=62.94  Aligned_cols=112  Identities=12%  Similarity=0.185  Sum_probs=84.6

Q ss_pred             eeeEEEEecCCcEEEEeC----CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         14 TASVRSVAATSKLAASSG----ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        14 ~~~v~~~~~~~~~l~~~~----~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ...+.++.|..+++++++    ..|+|.||- ++|++...... .-.+++++|+|..-.|+.|-.-|.+.+|.....+.-
T Consensus        17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~h   94 (1416)
T KOG3617|consen   17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETH   94 (1416)
T ss_pred             cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-ceehhhhccChHHHHHhhccccceeEEEecCCceee
Confidence            345666777888888775    578899885 67765443321 123467999999888999999999999997665443


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                       .....|... +..+.|+++|..++++..-|.+.+|....
T Consensus        95 -tv~~th~a~-i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   95 -TVVETHPAP-IQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             -eeccCCCCC-ceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence             332445544 99999999999999999999999998864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.38  E-value=9.6e-05  Score=56.23  Aligned_cols=114  Identities=10%  Similarity=0.103  Sum_probs=76.8

Q ss_pred             EEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEec---------------CCCeEEEEECCCCCEE-EEecCCCcEEEE
Q psy11518         19 SVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQH---------------EGTITCLKFTPEGSHL-ISCSDDGSIAIF   81 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l-~~~~~d~~i~~~   81 (139)
                      ++.+ ++.++++...++.|++||..++... .+.+.               -.....++++|++..+ ++-..++.|++|
T Consensus       689 a~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~  767 (1057)
T PLN02919        689 CFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRAL  767 (1057)
T ss_pred             EEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEE
Confidence            4445 5666777788899999998776432 22110               1234678999998854 555667899999


Q ss_pred             EeCCceEEEEEE-----------eCCC--------CcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         82 RVGSWQLEKLFK-----------KAHK--------GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        82 d~~~~~~~~~~~-----------~~~~--------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      |+.++.......           ....        ......++++++|..+++-..+++|++||..++...
T Consensus       768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            988765322110           0000        012568999999999999999999999999876554

>KOG2315|consensus

Probab=98.36  E-value=2.1e-05  Score=54.27  Aligned_cols=99  Identities=17%  Similarity=0.271  Sum_probs=70.8

Q ss_pred             CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEe--cCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCC
Q psy11518         33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC--SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG  110 (139)
Q Consensus        33 ~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  110 (139)
                      ..++++.+++.......+. ..++|.++.|+|+++-++.+  -.=..+.+||++ +.++..+    ..++-.++-|+|.|
T Consensus       250 Eq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df----~egpRN~~~fnp~g  323 (566)
T KOG2315|consen  250 EQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF----PEGPRNTAFFNPHG  323 (566)
T ss_pred             cceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC----CCCCccceEECCCC
Confidence            3467777766333333332 46899999999999877543  445679999986 5566555    22235779999999


Q ss_pred             cEEEEEcC---CCeEEEEEcCCCceeEEEe
Q psy11518        111 KLALSVGK---DKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       111 ~~l~~~~~---d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++++.+|.   .|.+.|||..+.+.+..+.
T Consensus       324 ~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~  353 (566)
T KOG2315|consen  324 NIILLAGFGNLPGDMEVWDVPNRKLIAKFK  353 (566)
T ss_pred             CEEEEeecCCCCCceEEEeccchhhccccc
Confidence            99998875   5889999999987776554

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.32  E-value=3.8e-05  Score=57.50  Aligned_cols=114  Identities=11%  Similarity=0.154  Sum_probs=78.1

Q ss_pred             eEEEEec--CCcEEEEeCC------CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC---CCcEEEEEeC
Q psy11518         16 SVRSVAA--TSKLAASSGA------DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD---DGSIAIFRVG   84 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~------~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~   84 (139)
                      .-..++|  ||.++|+.+-      -..++||+- .|....+...-.+--.+++|.|.|+++|+.-.   ...|.+|. +
T Consensus       211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-r  288 (928)
T PF04762_consen  211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-R  288 (928)
T ss_pred             CceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-c
Confidence            3445666  9999998763      258999984 46544444333333457899999999987755   23355555 5


Q ss_pred             CceEEEEEEeC--CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         85 SWQLEKLFKKA--HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        85 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +|.....+...  .....+..+.|++++..|+..-.|. |.+|-..+...
T Consensus       289 NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW  337 (928)
T PF04762_consen  289 NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW  337 (928)
T ss_pred             CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence            55554555333  3344589999999999999877665 99998887654

>KOG2695|consensus

Probab=98.28  E-value=2.9e-06  Score=55.51  Aligned_cols=100  Identities=14%  Similarity=0.259  Sum_probs=74.6

Q ss_pred             EEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce-----EEEEEEeCCCCccee
Q psy11518         28 ASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ-----LEKLFKKAHKGTAVN  102 (139)
Q Consensus        28 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~v~  102 (139)
                      ++.+.+..+-+-+++++-... |. ..+.|.+++|...++++..|..+|.|..+|++...     +...+  -|.. .|+
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~S-svt  302 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDS-SVT  302 (425)
T ss_pred             ecccccceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCc-chh
Confidence            445556778888888774322 22 45678899999889999999999999999997641     22222  2333 388


Q ss_pred             EEEEcc-CCcEEEEEcCCCeEEEEEcCCCce
Q psy11518        103 HISIHP-SGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus       103 ~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      ++..-. ++++|++.+.+|+|.+||+|--+.
T Consensus       303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~  333 (425)
T KOG2695|consen  303 SLQILQFSQQKLMASDMTGKIKLYDLRATKC  333 (425)
T ss_pred             hhhhhccccceEeeccCcCceeEeeehhhhc
Confidence            887666 788999999999999999986655

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.27  E-value=0.00025  Score=44.72  Aligned_cols=107  Identities=13%  Similarity=0.076  Sum_probs=73.6

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCC----------eEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGT----------ITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      .++.++++..++.|..+|+++++.+.........          +..-....++ .+..+..++.+..+|+.+++.....
T Consensus       121 ~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~  199 (238)
T PF13360_consen  121 DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSK  199 (238)
T ss_dssp             ETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEE
T ss_pred             ecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEe
Confidence            5778888888999999999999998887764322          1122222344 6666777776444499999977533


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                        . ... +... ...++..++.++.++.+..||+++++.+.+
T Consensus       200 --~-~~~-~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  200 --P-ISG-IYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             --C-SS--ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             --c-CCC-ccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEeE
Confidence              2 222 3321 345677777777999999999999998865

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.26  E-value=0.0003  Score=48.46  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=69.4

Q ss_pred             EEEEecCCcEEE-EeCC--CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec-CCC--cEEEEEeCCceEEE
Q psy11518         17 VRSVAATSKLAA-SSGA--DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS-DDG--SIAIFRVGSWQLEK   90 (139)
Q Consensus        17 v~~~~~~~~~l~-~~~~--~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~--~i~~~d~~~~~~~~   90 (139)
                      ...+++||+.++ +.+.  +..|.++|+.+++. ..+..+........|+|+|+.++-.+ ..+  .|.+.|+.+++...
T Consensus       237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r  315 (419)
T PRK04043        237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ  315 (419)
T ss_pred             eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe
Confidence            345667887665 3333  35677778777653 33443333334568999998776443 333  57788888777654


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCC---------CeEEEEEcCCCcee
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKD---------KTLRTWNLVKGRSA  133 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------~~i~i~d~~~~~~~  133 (139)
                      ... .  +.  ....|+|+|+.++.....         ..|.+.|+.++...
T Consensus       316 lt~-~--g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~  362 (419)
T PRK04043        316 VVF-H--GK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR  362 (419)
T ss_pred             Ccc-C--CC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence            442 1  11  124899999988766532         36888898887653

>KOG2314|consensus

Probab=98.26  E-value=3.4e-05  Score=53.57  Aligned_cols=112  Identities=9%  Similarity=0.126  Sum_probs=82.6

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC-----------CcEEEEEe
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD-----------GSIAIFRV   83 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~~~d~   83 (139)
                      .....++|.|.+|++-..-| |.+|-=++-..++.|. |. .|.-+.|||+.+||+|-+..           ..+.+||+
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI  289 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI  289 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence            35566777899999887766 7778766656666664 54 57889999999999987542           46899999


Q ss_pred             CCceEEEEEEeCCCCcce-eEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         84 GSWQLEKLFKKAHKGTAV-NHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      .+|.....+........+ .-..||.|+++++....+ .|.||+..+-
T Consensus       290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf  336 (698)
T KOG2314|consen  290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSF  336 (698)
T ss_pred             cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCce
Confidence            999988888553332222 346899999999988874 5888877653

>KOG1334|consensus

Probab=98.21  E-value=9.3e-07  Score=59.92  Aligned_cols=78  Identities=17%  Similarity=0.235  Sum_probs=67.0

Q ss_pred             EEeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518          8 FVTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      |+.+.....|..+.|   ..+++++|+..|.|-||+-.+++.+..+.+...-|+|+.-+|--..||+++-|..|+||-..
T Consensus       387 YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  387 YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             hcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCccceeeecCC
Confidence            565555567888877   57899999999999999999999888888777789999999998999999999999999864


Q ss_pred             C
Q psy11518         85 S   85 (139)
Q Consensus        85 ~   85 (139)
                      +
T Consensus       467 ~  467 (559)
T KOG1334|consen  467 T  467 (559)
T ss_pred             c
Confidence            3

>KOG1275|consensus

Probab=98.17  E-value=2.6e-05  Score=56.93  Aligned_cols=106  Identities=17%  Similarity=0.327  Sum_probs=81.8

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      ++..++.|+.-..+..+|+.+.+......-..+.|.-+..  +++.+.+|...|+|.+-|.++.+.+..+ ..|.+. +.
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~-~aHs~s-iS  221 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTF-DAHSGS-IS  221 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCceeeee-eccccc-ee
Confidence            5666777777777888898888776665544445555554  7789999999999999999999999998 677766 76


Q ss_pred             EEEEccCCcEEEEEcC---------CCeEEEEEcCCCceeE
Q psy11518        103 HISIHPSGKLALSVGK---------DKTLRTWNLVKGRSAY  134 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~  134 (139)
                      ++.  -.|+.|+++|.         |..|.+||+|.-+.+.
T Consensus       222 DfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~  260 (1118)
T KOG1275|consen  222 DFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS  260 (1118)
T ss_pred             eee--ccCCeEEEeecccccccccccchhhhhhhhhhhccC
Confidence            554  56888988873         7779999999876554

>KOG2066|consensus

Probab=98.17  E-value=1.3e-05  Score=57.58  Aligned_cols=99  Identities=22%  Similarity=0.242  Sum_probs=73.6

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      ..+.|+.+.+++++-|+.+|.|++++.... + .+...|...      ..+|.++++|+.||.+.+..+.+.+....+..
T Consensus        40 D~is~~av~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df  111 (846)
T KOG2066|consen   40 DAISCCAVHDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDF  111 (846)
T ss_pred             hHHHHHHhhcceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeEec
Confidence            445666678999999999999999986433 2 222234332      55899999999999999999888776665522


Q ss_pred             CCCCcceeEEEEccC-----CcEEEEEcCCCeEEEE
Q psy11518         95 AHKGTAVNHISIHPS-----GKLALSVGKDKTLRTW  125 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~-----~~~l~~~~~d~~i~i~  125 (139)
                         ..++-+++++|+     .+.+++||..| +.++
T Consensus       112 ---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~  143 (846)
T KOG2066|consen  112 ---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLS  143 (846)
T ss_pred             ---CCcceeEEeccchhhhhhhheeecCcce-EEEe
Confidence               223888999997     46788998887 6555

>smart00320 WD40 WD40 repeats

Probab=98.17  E-value=2e-05  Score=34.24  Aligned_cols=27  Identities=30%  Similarity=0.672  Sum_probs=25.1

Q ss_pred             ceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518        100 AVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      .+.+++|++++.++++++.|+.+++|+
T Consensus        14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            399999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.17  E-value=0.00049  Score=49.16  Aligned_cols=93  Identities=14%  Similarity=0.151  Sum_probs=67.6

Q ss_pred             CCeEEEEEccC-----CceeeEEEecCCCeEEEEECCCCCEEEEecC-CCcEEEEEeCCceE------------EEEEEe
Q psy11518         33 DETVVLYDMVK-----RKQSGALMQHEGTITCLKFTPEGSHLISCSD-DGSIAIFRVGSWQL------------EKLFKK   94 (139)
Q Consensus        33 ~~~v~i~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~------------~~~~~~   94 (139)
                      ++.|.+.|..+     .+.+..+. -......+.++|+|+++++++. +..+.+.|+.+.+.            ....  
T Consensus       295 gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaev--  371 (635)
T PRK02888        295 GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEP--  371 (635)
T ss_pred             CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEee--
Confidence            46788888877     33444444 3345588999999999875554 88999999977542            2222  


Q ss_pred             CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         95 AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                       ..+......+|.++|..+.+-.-|.+|..||+.+
T Consensus       372 -evGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        372 -ELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             -ccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence             1222267889999999888888999999999876

>KOG2314|consensus

Probab=98.16  E-value=1.5e-05  Score=55.22  Aligned_cols=76  Identities=24%  Similarity=0.453  Sum_probs=60.9

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcC-----------CCeEEEE
Q psy11518         57 ITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGK-----------DKTLRTW  125 (139)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~i~i~  125 (139)
                      =+-+.|||.|.||++--..| |.+|--.+...+..+  .|.+  |.-+.|||+.++|++=+.           ...+.||
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF--~Hp~--Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRF--YHPG--VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhc--cCCC--ceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence            36789999999999998877 889987776666665  3443  788999999999998652           2579999


Q ss_pred             EcCCCceeEEEe
Q psy11518        126 NLVKGRSAYITN  137 (139)
Q Consensus       126 d~~~~~~~~~~~  137 (139)
                      |+++|.....+.
T Consensus       288 DI~tG~lkrsF~  299 (698)
T KOG2314|consen  288 DIATGLLKRSFP  299 (698)
T ss_pred             Eccccchhccee
Confidence            999998877654

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.16  E-value=0.00064  Score=45.17  Aligned_cols=113  Identities=13%  Similarity=0.099  Sum_probs=71.8

Q ss_pred             cceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCc-eeeEE-EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC-ce
Q psy11518         12 SHTASVRSVAA-TSKLAASSGADETVVLYDMVKRK-QSGAL-MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS-WQ   87 (139)
Q Consensus        12 ~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~   87 (139)
                      ...++|.++.. ++.++++.  ++.|.+|++...+ ....- ......+.++..  .+++++.|+....+.++..+. ..
T Consensus        86 ~~~g~V~ai~~~~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~  161 (321)
T PF03178_consen   86 EVKGPVTAICSFNGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENN  161 (321)
T ss_dssp             EESS-EEEEEEETTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE
T ss_pred             eecCcceEhhhhCCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCC
Confidence            34677888887 66644444  3889999998877 33222 122235555554  456899998877888775543 33


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      ....+........+.++.+-++++.++.+..+|.+.++...
T Consensus       162 ~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  162 KLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             -EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             EEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            23333333333348888888777789999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4649|consensus

Probab=98.14  E-value=0.00029  Score=44.98  Aligned_cols=111  Identities=13%  Similarity=0.068  Sum_probs=83.1

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      ...+++.|+..+.+.--|+.+++...+-. -..++.+-+.- -|.+++.|+..|.+.+.+..++...+.+.....-. + 
T Consensus        22 skT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk-~-   97 (354)
T KOG4649|consen   22 SKTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK-V-   97 (354)
T ss_pred             CceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc-c-
Confidence            35678899999999999999998765532 12233332222 46679999999999999999998888874444322 2 


Q ss_pred             EEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518        103 HISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .....+++..+..++.|+..+..|.++...++..+
T Consensus        98 ~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen   98 RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             ceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence            24457789999999999999999999988887644

>KOG2079|consensus

Probab=98.10  E-value=4.9e-05  Score=56.44  Aligned_cols=111  Identities=20%  Similarity=0.260  Sum_probs=76.7

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCC-ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKR-KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      .+...+..+..++.|+..|.+...|.... .+...=..-.++|++++|+.+|+.++.|-.+|.|.+||...++....+..
T Consensus        91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            34444446667888998999998887553 22222223467899999999999999999999999999999887776632


Q ss_pred             C-CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         95 A-HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        95 ~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      . ++...+..+.+..++..++++...|.  +|.+.
T Consensus       171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             cCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            2 22222444455556667777777775  56543

>KOG1912|consensus

Probab=98.08  E-value=0.00011  Score=53.19  Aligned_cols=100  Identities=13%  Similarity=0.227  Sum_probs=78.1

Q ss_pred             EEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC---CC-CEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         26 LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP---EG-SHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        26 ~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                      +++++...|.|.+||+..+..+..+..|..++..+.|-+   +. ..|+.-.....+.+|+..+|+..+.+...+.  ..
T Consensus        81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~--iL  158 (1062)
T KOG1912|consen   81 LIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE--IL  158 (1062)
T ss_pred             eEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc--ce
Confidence            578888999999999999988888888888899888865   33 3566666677899999999999998844443  26


Q ss_pred             eEEEEcc-CCcEEEEEcCCCeEEEEEc
Q psy11518        102 NHISIHP-SGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus       102 ~~~~~~~-~~~~l~~~~~d~~i~i~d~  127 (139)
                      .++.+.| |.+.+..-+..|.+.+-+.
T Consensus       159 s~f~~DPfd~rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  159 SCFRVDPFDSRHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             eeeeeCCCCcceEEEEccCceEEEEec
Confidence            7788988 6676766666777666654

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=98.07  E-value=2.6e-05  Score=36.55  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             cceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         99 TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      .+|..++|+|...+++.++.+|.|.+|.+ +++.+
T Consensus        12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qri   45 (47)
T PF12894_consen   12 SRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQRI   45 (47)
T ss_pred             CcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcCc
Confidence            34899999999999999999999999999 66654

>KOG0882|consensus

Probab=98.05  E-value=6.5e-05  Score=51.01  Aligned_cols=108  Identities=13%  Similarity=0.138  Sum_probs=80.6

Q ss_pred             EeCCCCeEEEEEccCCc-e-eeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC------ceEEEEE-------E
Q psy11518         29 SSGADETVVLYDMVKRK-Q-SGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS------WQLEKLF-------K   93 (139)
Q Consensus        29 ~~~~~~~v~i~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~------~~~~~~~-------~   93 (139)
                      ..-.++.+.++|..... + ...-.-|.++|.++.++|.+..+.+....|.|..|....      ......+       .
T Consensus       117 s~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~  196 (558)
T KOG0882|consen  117 SLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYG  196 (558)
T ss_pred             ecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhc
Confidence            33467899999976543 2 333345899999999999999999999999999999763      1111111       1


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .........++.|+|++..+.+-+.|+.|+++++++++.++.+
T Consensus       197 f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  197 FPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            1112223788999999999999999999999999999887654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.05  E-value=7.2e-05  Score=48.75  Aligned_cols=115  Identities=22%  Similarity=0.360  Sum_probs=76.9

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc-----eeeEEEecC------------CCeEEEEECCC--CCEEEE
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRK-----QSGALMQHE------------GTITCLKFTPE--GSHLIS   71 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~--~~~l~~   71 (139)
                      ....|+++.|  .|.++++|...|.|.+|.-+...     ....|++|.            ..|..+.|..+  ...++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3456788888  68899999999999999865432     223355553            35778887653  345666


Q ss_pred             ecCCCcEEEEEeCCceE------------------------------------------EEEEEeCCCCcceeEEEEccC
Q psy11518         72 CSDDGSIAIFRVGSWQL------------------------------------------EKLFKKAHKGTAVNHISIHPS  109 (139)
Q Consensus        72 ~~~d~~i~~~d~~~~~~------------------------------------------~~~~~~~~~~~~v~~~~~~~~  109 (139)
                      .+.|.+|++|.+.....                                          .+.+...|.-. +.+++|+.|
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yh-iNSiS~NsD  183 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYH-INSISFNSD  183 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeE-eeeeeecCc
Confidence            77889999998754200                                          01111233333 788999988


Q ss_pred             CcEEEEEcCCCeEEEEEcCC
Q psy11518        110 GKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus       110 ~~~l~~~~~d~~i~i~d~~~  129 (139)
                      .+.++++. |-+|.+|++.-
T Consensus       184 ~et~lSaD-dLrINLWnl~i  202 (460)
T COG5170         184 KETLLSAD-DLRINLWNLEI  202 (460)
T ss_pred             hheeeecc-ceeeeeccccc
Confidence            88877664 66799998864

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.03  E-value=0.001  Score=42.48  Aligned_cols=122  Identities=17%  Similarity=0.159  Sum_probs=79.0

Q ss_pred             eeeEEEEec--CCcEEEEeCCC--------CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEEE
Q psy11518         14 TASVRSVAA--TSKLAASSGAD--------ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFR   82 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l~~~~~~--------~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d   82 (139)
                      ....+++.+  +|++.++....        +.|..++.. ++...... .-...+.++|+|+++.|. +-+..+.|..++
T Consensus        85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEE
T ss_pred             cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEe
Confidence            345555555  78877765533        456667765 44333333 344568999999998765 667788899999


Q ss_pred             eCCce--E--EEEE-EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         83 VGSWQ--L--EKLF-KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        83 ~~~~~--~--~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +....  .  ...+ ........+-.+++..+|++.++....+.|.++|.+ |+.+..+.+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~  222 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL  222 (246)
T ss_dssp             EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-
T ss_pred             ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC
Confidence            85321  1  1222 122222237889999999988888888999999998 888776654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.01  E-value=0.00045  Score=47.21  Aligned_cols=109  Identities=6%  Similarity=-0.035  Sum_probs=73.7

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      .+..++.++.++.+..+|+.+++.+......  ....+.  ..+..+..++.+|.+..+|..+++.++......... ..
T Consensus       255 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~-~~  329 (394)
T PRK11138        255 VGGVVYALAYNGNLVALDLRSGQIVWKREYG--SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRL-LT  329 (394)
T ss_pred             ECCEEEEEEcCCeEEEEECCCCCEEEeecCC--CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCc-cc
Confidence            3556667778899999999999877654321  111122  245677778889999999999998877552211111 22


Q ss_pred             EEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        103 HISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +...  .+..++.++.+|.++++|..+|+.+...++
T Consensus       330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~  363 (394)
T PRK11138        330 APVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV  363 (394)
T ss_pred             CCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence            2222  255678889999999999999998877653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.01  E-value=0.00041  Score=50.98  Aligned_cols=120  Identities=16%  Similarity=0.182  Sum_probs=79.7

Q ss_pred             eeEEEEEeecceeeEEEEecC-------CcEEEEeCCCCeEEEEEccCCc-eeeEEE----ecCCCeEEEEECCCCCEEE
Q psy11518          3 TLTQTFVTHSHTASVRSVAAT-------SKLAASSGADETVVLYDMVKRK-QSGALM----QHEGTITCLKFTPEGSHLI   70 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~~-------~~~l~~~~~~~~v~i~~~~~~~-~~~~~~----~~~~~v~~~~~~~~~~~l~   70 (139)
                      +++..+..+. ..++..+.++       ...-+.|-.+..+..||++-.. .+..-.    ......+|++-+.+| ++|
T Consensus       515 KVV~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~ia  592 (794)
T PF08553_consen  515 KVVEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIA  592 (794)
T ss_pred             cEEEEeecCC-CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEE
Confidence            5666777643 3447777762       3455677778889999987542 221111    133456777766555 689


Q ss_pred             EecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518         71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        71 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      .|+.+|.|++||-- +..-... .+.-+.||.+++.+.||+|+++.+. ..|.+++.
T Consensus       593 vgs~~G~IRLyd~~-g~~AKT~-lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  593 VGSNKGDIRLYDRL-GKRAKTA-LPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT  646 (794)
T ss_pred             EEeCCCcEEeeccc-chhhhhc-CCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence            99999999999943 3322222 3455677999999999999987765 45666665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.01  E-value=0.00039  Score=47.51  Aligned_cols=111  Identities=15%  Similarity=0.094  Sum_probs=75.3

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCC--CeE-----EEEECC--CCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEG--TIT-----CLKFTP--EGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~--~v~-----~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .+..+++++.++.+.-+|.++++.+........  ...     .+.-.|  .+..++.++.++.+..+|..+++..+...
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~  147 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTK  147 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCccccc
Confidence            567888888899999999999998877543220  000     001111  34566777889999999999999988774


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .....  ......  .+..++.+..++.+..+|.++|+.+...+
T Consensus       148 ~~~~~--~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        148 VAGEA--LSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             CCCce--ecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeec
Confidence            33211  111112  24456677889999999999999987764

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.99  E-value=0.00054  Score=38.08  Aligned_cols=90  Identities=9%  Similarity=0.108  Sum_probs=61.4

Q ss_pred             cEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEE
Q psy11518         25 KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHI  104 (139)
Q Consensus        25 ~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~  104 (139)
                      +.|++|+.|..|++|+  ....+.++... +.|+++.-... ..++.+..+|+|-+|+-.  ..++..+..+.   +.++
T Consensus        16 ~eLlvGs~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~---~~~~   86 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFK--GDEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQ---VTSM   86 (111)
T ss_pred             ceEEEecCCcEEEEEe--CCcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCC---eEEE
Confidence            5799999999999997  44667777654 46777776654 678999999999999853  33444432333   4444


Q ss_pred             EE-cc--CCc-EEEEEcCCCeEE
Q psy11518        105 SI-HP--SGK-LALSVGKDKTLR  123 (139)
Q Consensus       105 ~~-~~--~~~-~l~~~~~d~~i~  123 (139)
                      ++ ..  +|. -|++|-.+|.|-
T Consensus        87 ~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   87 AFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEcCCCCCceEEEEEecCCeEE
Confidence            43 33  332 677887888764

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.99  E-value=0.0015  Score=42.92  Aligned_cols=118  Identities=14%  Similarity=0.198  Sum_probs=80.1

Q ss_pred             EEec-CCcEEEEeCCCC-eEEEEEccCCceeeEEEecCCCe--EEEEECCCCCEEEEe-----cCCCcEEEEEeC-CceE
Q psy11518         19 SVAA-TSKLAASSGADE-TVVLYDMVKRKQSGALMQHEGTI--TCLKFTPEGSHLISC-----SDDGSIAIFRVG-SWQL   88 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~~-~v~i~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~-----~~d~~i~~~d~~-~~~~   88 (139)
                      +..+ ....++.+-.-| ...+||..+++....+....+.-  -.-.|+++|++|.+.     ...|.|-+||.. ..+.
T Consensus        11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~r   90 (305)
T PF07433_consen   11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRR   90 (305)
T ss_pred             eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEE
Confidence            4445 556666666554 57789999998887765433321  245799999999876     346789999998 5556


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEc------------------CCCeEEEEEcCCCceeEEEec
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVG------------------KDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------------~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +..+. .+--. ...+.+.||++.|+++.                  .+..+...|.++|+.+.+..+
T Consensus        91 i~E~~-s~GIG-PHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L  156 (305)
T PF07433_consen   91 IGEFP-SHGIG-PHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL  156 (305)
T ss_pred             EeEec-CCCcC-hhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec
Confidence            66662 22222 67788999998777763                  245566777788887766543

>KOG2114|consensus

Probab=97.98  E-value=0.00021  Score=52.08  Aligned_cols=109  Identities=13%  Similarity=0.188  Sum_probs=77.3

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCC-eEEEEECCCCCEEEEecCCCc-----EEEEEeCCc---
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGT-ITCLKFTPEGSHLISCSDDGS-----IAIFRVGSW---   86 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~---   86 (139)
                      .+.|++..+..++.|+.+|.|.+.+ ..-+.+..++.+... |..+-...+..+|++.+.|+.     +++|++..-   
T Consensus        27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            7888888999999999999998877 334445677777666 444433334467777666554     899998542   


Q ss_pred             ---eEE---EEE--EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEE
Q psy11518         87 ---QLE---KLF--KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW  125 (139)
Q Consensus        87 ---~~~---~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  125 (139)
                         .+.   ..+  ..+....|++.++.+.+-+.+++|-.+|.|..+
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~  152 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICY  152 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEE
Confidence               222   222  123345568899999999999999999999887

>KOG2041|consensus

Probab=97.97  E-value=2.2e-05  Score=56.23  Aligned_cols=117  Identities=15%  Similarity=0.209  Sum_probs=89.1

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEE--EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGAL--MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ..||...|+-+.|  +.+.+-+...+|.|.+|-+-.+.=....  ....+.|.+++|+.+|..++..-.||.|.+=.++.
T Consensus        67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdG  146 (1189)
T KOG2041|consen   67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDG  146 (1189)
T ss_pred             hccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecc
Confidence            4578999999998  6677899999999999998666322211  23456788999999999999999999999887765


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      .+.-.   ..-.+....++.|++|.+.++.+-..|.+++||...
T Consensus       147 NRIwg---KeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  147 NRIWG---KELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             ceecc---hhcchheccceeecccHHHHHhhhcCCcEEEecccc
Confidence            44321   122233367899999999988888889999998753

>KOG0309|consensus

Probab=97.94  E-value=8.8e-05  Score=53.41  Aligned_cols=108  Identities=17%  Similarity=0.248  Sum_probs=77.7

Q ss_pred             CCcEEEEeCCCCeEEEEEccCC---ceeeEEEecCCCeEEEEECCC-CCEEEEecCCCcEEEEEeCCceE-EEEEEeCCC
Q psy11518         23 TSKLAASSGADETVVLYDMVKR---KQSGALMQHEGTITCLKFTPE-GSHLISCSDDGSIAIFRVGSWQL-EKLFKKAHK   97 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~   97 (139)
                      ...+-++......-.+|++...   ..-..+.+|...++.+.|+|. ...+++++.|-.+..||++.... ...+..-+.
T Consensus        80 a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s  159 (1081)
T KOG0309|consen   80 AKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS  159 (1081)
T ss_pred             CCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccc
Confidence            3445555555666667887543   334567789999999999985 56789999999999999987653 333322222


Q ss_pred             CcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         98 GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        98 ~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      .  ...+.|+-....+++.+..+.|++||++.|..
T Consensus       160 ~--asqVkwnyk~p~vlasshg~~i~vwd~r~gs~  192 (1081)
T KOG0309|consen  160 A--ASQVKWNYKDPNVLASSHGNDIFVWDLRKGST  192 (1081)
T ss_pred             c--CceeeecccCcchhhhccCCceEEEeccCCCc
Confidence            2  57789998666677777778899999998754

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.93  E-value=0.0024  Score=45.98  Aligned_cols=103  Identities=15%  Similarity=0.268  Sum_probs=69.6

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEE-ecCCCeEEEEEC--CCCCEEEEecCCCcEEEEEeC---------CceEEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFT--PEGSHLISCSDDGSIAIFRVG---------SWQLEK   90 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~---------~~~~~~   90 (139)
                      -++..++-.....+.|||...+.....-. ...+.|..+.|.  |+++.+++.+....|.++--.         ....+.
T Consensus        40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~  119 (631)
T PF12234_consen   40 IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIR  119 (631)
T ss_pred             cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeE
Confidence            45555555566789999998876433322 346788999886  588888888888889888531         223333


Q ss_pred             EEE-eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518         91 LFK-KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        91 ~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      .+. ..+...+|.+..|.++|.+++.+|  +.+.|+|-
T Consensus       120 ~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  120 KIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             EEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            332 344556699999999998777664  45777753

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=97.88  E-value=0.0021  Score=42.58  Aligned_cols=117  Identities=12%  Similarity=0.222  Sum_probs=74.1

Q ss_pred             EEEecCCcEEEEeCCC---CeEEEEEccC--Ccee--eEEEecCCCeEEEEECCCCCEEEEecC-CCcEEEEEeCC-ceE
Q psy11518         18 RSVAATSKLAASSGAD---ETVVLYDMVK--RKQS--GALMQHEGTITCLKFTPEGSHLISCSD-DGSIAIFRVGS-WQL   88 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~---~~v~i~~~~~--~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~-~~~   88 (139)
                      +.+.++++.|.++..+   |.|-.|.++.  |+..  -.......+-+.+++++++++++++.. .|.|.++-+++ |.+
T Consensus        45 l~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l  124 (346)
T COG2706          45 LAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL  124 (346)
T ss_pred             EEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence            3444577777777644   6677777664  4322  112222334478999999999987765 57899998865 333


Q ss_pred             EEEEEe-CCCCc--------c-eeEEEEccCCcEEEEEcC-CCeEEEEEcCCCceeE
Q psy11518         89 EKLFKK-AHKGT--------A-VNHISIHPSGKLALSVGK-DKTLRTWNLVKGRSAY  134 (139)
Q Consensus        89 ~~~~~~-~~~~~--------~-v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~  134 (139)
                      ...... .|.+.        + +....+.|+++++++..- --+|.+|++..++...
T Consensus       125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~  181 (346)
T COG2706         125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTP  181 (346)
T ss_pred             ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccc
Confidence            222111 11111        1 667889999999988862 3469999999876654

>KOG1645|consensus

Probab=97.86  E-value=4.5e-05  Score=51.02  Aligned_cols=74  Identities=8%  Similarity=0.128  Sum_probs=60.3

Q ss_pred             ceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCC-CCEEEEecCCCcEEEEEeCCce
Q psy11518         13 HTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE-GSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        13 ~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      +...|.++++   +..++..++.+..|+|.|+++......+..+ ..+.+++|.-+ .+++..|...|.|.+||.+..+
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            3444555555   4557889999999999999999888888877 67899999874 5678899999999999998765

>KOG2444|consensus

Probab=97.86  E-value=0.00014  Score=45.25  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=68.9

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceee-EEEecCCCeEEEE-ECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcc
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSG-ALMQHEGTITCLK-FTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA  100 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~-~~~~~~~~v~~~~-~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  100 (139)
                      -+..+++|+.+|.|.+|.....-... .+..-...+.++. -..++.+..++..++.|+.|++...+..... ..|...+
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~  147 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFES  147 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeee-ccccCCC
Confidence            45678899999999999876221111 1111122333322 2234567889999999999999887776665 3344233


Q ss_pred             eeEEEEccCCcEEEEE--cCCCeEEEEEcCCC
Q psy11518        101 VNHISIHPSGKLALSV--GKDKTLRTWNLVKG  130 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~  130 (139)
                      .........++++..+  +.|..+..|++..-
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            5556666667777777  77888888887643

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.86  E-value=0.0021  Score=42.17  Aligned_cols=99  Identities=15%  Similarity=0.260  Sum_probs=73.5

Q ss_pred             EEecCCcEEEEeC-----CCCeEEEEEcc-CCceeeEEEecCCCeEEEEECCCCCEEEEecC------------------
Q psy11518         19 SVAATSKLAASSG-----ADETVVLYDMV-KRKQSGALMQHEGTITCLKFTPEGSHLISCSD------------------   74 (139)
Q Consensus        19 ~~~~~~~~l~~~~-----~~~~v~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------   74 (139)
                      ++++||++|++.-     ..|.|-|||.. +.+.+.++..|.-.-..+.+.|+++.|+.+..                  
T Consensus        57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM  136 (305)
T PF07433_consen   57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM  136 (305)
T ss_pred             EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence            4556888888763     45799999998 66888888888766788899999987776632                  


Q ss_pred             CCcEEEEEeCCceEEEEEEe--CCCCcceeEEEEccCCcEEEEEc
Q psy11518         75 DGSIAIFRVGSWQLEKLFKK--AHKGTAVNHISIHPSGKLALSVG  117 (139)
Q Consensus        75 d~~i~~~d~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~  117 (139)
                      +..+...|..+++++.....  ..+..++.+++++++|..++..-
T Consensus       137 ~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q  181 (305)
T PF07433_consen  137 QPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQ  181 (305)
T ss_pred             CCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEe
Confidence            22466677888888777544  44444599999999988666553

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.84  E-value=0.00019  Score=49.41  Aligned_cols=95  Identities=15%  Similarity=0.255  Sum_probs=68.7

Q ss_pred             EEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEc
Q psy11518         38 LYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG  117 (139)
Q Consensus        38 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  117 (139)
                      +|...+...-..+....-++...+|||.|.+|++....+ |.+|+-.....+..+  .|. . |..+.|+|++++|++-.
T Consensus        16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~--~~~-~-V~~~~fSP~~kYL~tw~   90 (561)
T COG5354          16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRF--RHP-D-VKYLDFSPNEKYLVTWS   90 (561)
T ss_pred             eecCccccccccccccCcchhheeecCcchheehhhccc-eEEccccchhheeee--ecC-C-ceecccCcccceeeeec
Confidence            344444433334444556788899999999999887665 999997776644444  222 2 88899999999999865


Q ss_pred             CC---------------CeEEEEEcCCCceeEEEe
Q psy11518        118 KD---------------KTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       118 ~d---------------~~i~i~d~~~~~~~~~~~  137 (139)
                      ..               ..+.+||..++..+..+.
T Consensus        91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~  125 (561)
T COG5354          91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN  125 (561)
T ss_pred             cCCccChhhccCCccccCceeEEeccCceeEeecc
Confidence            33               359999999999887754

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.84  E-value=0.00097  Score=45.76  Aligned_cols=88  Identities=14%  Similarity=0.253  Sum_probs=60.7

Q ss_pred             EEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccC-----------------Cc-
Q psy11518         50 LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS-----------------GK-  111 (139)
Q Consensus        50 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------------~~-  111 (139)
                      +....-.+.++..+|.+++.|+.+.=|.|.++|+.++..+..+ .+.++..+.-+.....                 .. 
T Consensus       303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmW-KGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMW-KGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhh-ccCccceEEEEEeecccccccccccccCCCCcceEE
Confidence            3344456789999999999999888899999999888776665 3333222211111111                 11 


Q ss_pred             EEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        112 LALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       112 ~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +++-+...|.|.||++++|..+..+.+
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence            234566789999999999999988765

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.82  E-value=0.0015  Score=45.31  Aligned_cols=111  Identities=16%  Similarity=0.214  Sum_probs=76.3

Q ss_pred             eeeEEEEec--CCcEE--EEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC---CcEEEEEeCCc
Q psy11518         14 TASVRSVAA--TSKLA--ASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD---GSIAIFRVGSW   86 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l--~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~~~d~~~~   86 (139)
                      .++|.++.|  .++.+  +.|-....+.++|+... ....+.  ...=..+.|+|.+++++.++.+   |.+.+||....
T Consensus       274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             cccceeeeecccCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEecCCccccceEEeccCCc
Confidence            566777776  44444  34457888999998665 333333  3344678899999999887664   67999998765


Q ss_pred             eEEE-EEEeCCCCcceeEEEEccCCcEEEEEc------CCCeEEEEEcCCCc
Q psy11518         87 QLEK-LFKKAHKGTAVNHISIHPSGKLALSVG------KDKTLRTWNLVKGR  131 (139)
Q Consensus        87 ~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~  131 (139)
                      .... .+ ....   .+-..|+|+++++.+..      .|..+.|||+...+
T Consensus       351 f~~~~~~-~~~n---~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~  398 (561)
T COG5354         351 FKVAGAF-NGLN---TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK  398 (561)
T ss_pred             eEEEEEe-ecCC---ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence            5443 33 2222   45578999999988775      47889999986543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=97.81  E-value=0.0027  Score=40.50  Aligned_cols=101  Identities=14%  Similarity=0.106  Sum_probs=63.4

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEe-----cCCCeEEEEECCCCCEEEEecCC--------CcEEEEEeCCceEEE
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQ-----HEGTITCLKFTPEGSHLISCSDD--------GSIAIFRVGSWQLEK   90 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d--------~~i~~~d~~~~~~~~   90 (139)
                      +..++.+...+ +.++|+.+++.......     .....+.+++.|+|++.++....        |.+..++.. ++...
T Consensus        51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~  128 (246)
T PF08450_consen   51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV  128 (246)
T ss_dssp             TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred             CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence            34444444444 45569888855443332     23457889999999988776544        346666655 45444


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEE-EEcCCCeEEEEEcCC
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLAL-SVGKDKTLRTWNLVK  129 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~  129 (139)
                      ....  -.. ...++|+|+++.|+ +-+..+.|..|++..
T Consensus       129 ~~~~--~~~-pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~  165 (246)
T PF08450_consen  129 VADG--LGF-PNGIAFSPDGKTLYVADSFNGRIWRFDLDA  165 (246)
T ss_dssp             EEEE--ESS-EEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred             EecC--ccc-ccceEECCcchheeecccccceeEEEeccc
Confidence            4322  222 78999999998665 667788899999864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1920|consensus

Probab=97.80  E-value=0.0007  Score=51.20  Aligned_cols=113  Identities=14%  Similarity=0.155  Sum_probs=72.1

Q ss_pred             EEecCCcEEEE-----eCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec---CCCcEEEEEeCCceEEE
Q psy11518         19 SVAATSKLAAS-----SGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS---DDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        19 ~~~~~~~~l~~-----~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~   90 (139)
                      ++..||+++++     ......+++||-+ +..-..-......-.+++|-|.|..+++-.   .|+.|.+|.- +|-...
T Consensus       202 sWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg  279 (1265)
T KOG1920|consen  202 SWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHG  279 (1265)
T ss_pred             EEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCcccc
Confidence            34449999988     3334799999976 433222222233346899999999887653   3456888774 333322


Q ss_pred             EEE--eCCCCcceeEEEEccCCcEEEE---EcCCCeEEEEEcCCCcee
Q psy11518         91 LFK--KAHKGTAVNHISIHPSGKLALS---VGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        91 ~~~--~~~~~~~v~~~~~~~~~~~l~~---~~~d~~i~i~d~~~~~~~  133 (139)
                      .+.  .+....++..++|+.++..|++   ......|.+|-+.+...-
T Consensus       280 ~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  280 EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEE
Confidence            221  1222223889999999999887   455666999988776543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.78  E-value=0.00013  Score=34.22  Aligned_cols=34  Identities=21%  Similarity=0.688  Sum_probs=29.5

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         54 EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ...|.+++|+|...++|.+..+|.|.++.+ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            356899999999999999999999999998 4443

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.76  E-value=0.00029  Score=46.02  Aligned_cols=124  Identities=16%  Similarity=0.229  Sum_probs=80.2

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCce---eeEEEec-----CCCeEEEEECCC-CCEEEEecCCCcEE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQ---SGALMQH-----EGTITCLKFTPE-GSHLISCSDDGSIA   79 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~---~~~~~~~-----~~~v~~~~~~~~-~~~l~~~~~d~~i~   79 (139)
                      ..|+..+.++++  +.+.+++ ..|-.|.+|+++-...   +...+.|     ..-|++..|+|. .+.+.-.+..|.|+
T Consensus       169 NaH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            567888899998  4445554 4577899999865322   2222222     235778889995 45566677789999


Q ss_pred             EEEeCCceEE------EEEE--------eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc-eeEEE
Q psy11518         80 IFRVGSWQLE------KLFK--------KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR-SAYIT  136 (139)
Q Consensus        80 ~~d~~~~~~~------~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~  136 (139)
                      +-|++...+.      ....        ...-...|..+.|+++|+++++-+. -++.|||.+..+ ++.++
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi  318 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI  318 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee
Confidence            9999853221      0000        0011123889999999999987665 479999998653 34443

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.70  E-value=0.0029  Score=44.61  Aligned_cols=106  Identities=11%  Similarity=0.137  Sum_probs=72.5

Q ss_pred             EEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEe------------------cCCCcEEEEEeCCce
Q psy11518         26 LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC------------------SDDGSIAIFRVGSWQ   87 (139)
Q Consensus        26 ~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------------------~~d~~i~~~d~~~~~   87 (139)
                      .+++++.+|.+...|.++++.+.......   ..++.+|  ..+..+                  ..+|.+.-.|..+++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~---~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~  377 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEVE---QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK  377 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEeec---cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCc
Confidence            57888899999999999999887654221   1223344  222221                  246789999999999


Q ss_pred             EEEEEEeCCCC------cce--eEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         88 LEKLFKKAHKG------TAV--NHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        88 ~~~~~~~~~~~------~~v--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .++........      .+.  ..+.  ..+..++.++.||.++.+|.++|+.+.+.++
T Consensus       378 ~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~  434 (488)
T cd00216         378 VVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFRAFDATTGKELWKFRT  434 (488)
T ss_pred             EeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence            88887443110      101  1122  2467888889999999999999999988765

The alignment model contains an 8-bladed beta-propeller.

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.69  E-value=0.0041  Score=44.73  Aligned_cols=106  Identities=11%  Similarity=0.099  Sum_probs=67.0

Q ss_pred             CCcEEE-EeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec----------------------------
Q psy11518         23 TSKLAA-SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS----------------------------   73 (139)
Q Consensus        23 ~~~~l~-~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------------------------   73 (139)
                      +|+.+. +.-..+.+.+.|.++.+...++.--. ....++++|+++++.+.+                            
T Consensus       203 DGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~i  281 (635)
T PRK02888        203 DGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARI  281 (635)
T ss_pred             CCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHH
Confidence            555443 23345667777777766665554322 334556777777765554                            


Q ss_pred             ------------CCCcEEEEEeCC-----ceEEEEEEeCCCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcCCCce
Q psy11518         74 ------------DDGSIAIFRVGS-----WQLEKLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLVKGRS  132 (139)
Q Consensus        74 ------------~d~~i~~~d~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~  132 (139)
                                  .++.|.+.|..+     ......+..+.   .+..++++|||+++++++ .+..+.|+|+.+.+.
T Consensus       282 ea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGK---sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~  355 (635)
T PRK02888        282 EEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPK---NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDD  355 (635)
T ss_pred             HHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCC---CccceEECCCCCEEEEeCCCCCcEEEEEChhhhh
Confidence                        124477777766     34444442222   278899999999887776 589999999988653

>KOG0882|consensus

Probab=97.66  E-value=0.00089  Score=45.78  Aligned_cols=124  Identities=16%  Similarity=0.176  Sum_probs=89.6

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccC------Ccee---------eEEEecCCCeEEEEECCCCCEEEEecC
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVK------RKQS---------GALMQHEGTITCLKFTPEGSHLISCSD   74 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~------~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~   74 (139)
                      -|..+|.++.+  .+..+++....|.|.-|..+.      .+..         ..+........++.|+|++..+++-+.
T Consensus       142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence            36677777776  677888888899999999763      1111         112234556789999999999999999


Q ss_pred             CCcEEEEEeCCceEEEEEEe-------------------------------CCCCcceeEEEEccCCcEEEEEcCCCeEE
Q psy11518         75 DGSIAIFRVGSWQLEKLFKK-------------------------------AHKGTAVNHISIHPSGKLALSVGKDKTLR  123 (139)
Q Consensus        75 d~~i~~~d~~~~~~~~~~~~-------------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  123 (139)
                      |..|++++..++++...+..                               .+...+-..+.|...+++|+.++.=| |.
T Consensus       222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ik  300 (558)
T KOG0882|consen  222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IK  300 (558)
T ss_pred             ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EE
Confidence            99999999988765433210                               01112245678999999999988765 88


Q ss_pred             EEEcCCCceeEEE
Q psy11518        124 TWNLVKGRSAYIT  136 (139)
Q Consensus       124 i~d~~~~~~~~~~  136 (139)
                      +.++.+++....+
T Consensus       301 vin~~tn~v~ri~  313 (558)
T KOG0882|consen  301 VINLDTNTVVRIL  313 (558)
T ss_pred             EEEeecCeEEEEe
Confidence            9999988776654

>KOG1008|consensus

Probab=97.58  E-value=1.4e-05  Score=56.30  Aligned_cols=113  Identities=19%  Similarity=0.249  Sum_probs=79.5

Q ss_pred             eEEEEec----CCcEEEEeCCCCeEEEEEccCCce--eeEEEecCCCeEEEEECC-CCCEEEEecC----CCcEEEEEeC
Q psy11518         16 SVRSVAA----TSKLAASSGADETVVLYDMVKRKQ--SGALMQHEGTITCLKFTP-EGSHLISCSD----DGSIAIFRVG   84 (139)
Q Consensus        16 ~v~~~~~----~~~~l~~~~~~~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~----d~~i~~~d~~   84 (139)
                      .+.|++.    +..++++|..+|.|.+-.+....-  .....++....++++|++ |.+.||.|-.    |..+.+||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            4445553    556889999999999887754321  233456777889999998 6677777743    5569999997


Q ss_pred             Cc--eEE--EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         85 SW--QLE--KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        85 ~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      +.  .+.  ..+.. .......+++|..+.+++++|...+.++++|+|.
T Consensus       138 s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq  185 (783)
T KOG1008|consen  138 SLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ  185 (783)
T ss_pred             cccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhh
Confidence            76  222  22211 1222266899998999999999999999999984

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.55  E-value=0.005  Score=43.47  Aligned_cols=113  Identities=10%  Similarity=0.054  Sum_probs=73.0

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCC------eE--EEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGT------IT--CLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~------v~--~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      .+..++.++.++.|.-.|..+++.+..+......      +.  .+... ++..++.++.++.|..+|.++++.++.+..
T Consensus        60 ~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          60 VDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             ECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence            4556777888899999999999888776533220      00  01111 225677788899999999999999988854


Q ss_pred             CCCC--c-ce-eEEEEccCCcEEEEEc---------CCCeEEEEEcCCCceeEEEec
Q psy11518         95 AHKG--T-AV-NHISIHPSGKLALSVG---------KDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        95 ~~~~--~-~v-~~~~~~~~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ....  . .+ ....+. + ..++.++         .++.+..+|..+|+.+....+
T Consensus       139 ~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~  193 (488)
T cd00216         139 NDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT  193 (488)
T ss_pred             CCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence            3321  0 01 111122 2 3444443         368899999999999887653

The alignment model contains an 8-bladed beta-propeller.

>KOG4649|consensus

Probab=97.51  E-value=0.0092  Score=38.46  Aligned_cols=83  Identities=11%  Similarity=0.005  Sum_probs=61.0

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeE
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNH  103 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~  103 (139)
                      |++++.|...|.+.+.+++++.....+..-+.-=..-...+++..+..++.|+.....|.++...+...+.+...  -.+
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~s  140 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVS  140 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--ecc
Confidence            556889999999999999999888777654322223356778999999999999999999988877776433332  233


Q ss_pred             EEEcc
Q psy11518        104 ISIHP  108 (139)
Q Consensus       104 ~~~~~  108 (139)
                      -+..|
T Consensus       141 P~i~~  145 (354)
T KOG4649|consen  141 PVIAP  145 (354)
T ss_pred             ceecC
Confidence            44555

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.46  E-value=0.016  Score=39.87  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=71.3

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCce-------------------------------------------eeEEEecCC
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQ-------------------------------------------SGALMQHEG   55 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~-------------------------------------------~~~~~~~~~   55 (139)
                      +++++..-|++|...|.|.+|.....+.                                           ...++...+
T Consensus         8 s~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g   87 (395)
T PF08596_consen    8 SFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQG   87 (395)
T ss_dssp             EEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-
T ss_pred             EecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCC
Confidence            3344667788888889988887642211                                           111223467


Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCC------CCcceeEEEEcc-----CC---cEEEEEcCCCe
Q psy11518         56 TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH------KGTAVNHISIHP-----SG---KLALSVGKDKT  121 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~v~~~~~~~-----~~---~~l~~~~~d~~  121 (139)
                      +|++++.+ +=-++|.|..+|.+.+.|++....+..-....      ....++++.|..     |+   -.+++|...|.
T Consensus        88 ~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~  166 (395)
T PF08596_consen   88 PVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGN  166 (395)
T ss_dssp             SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSE
T ss_pred             cEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCC
Confidence            89999987 44488999999999999999888877643332      222377788773     33   47889999999


Q ss_pred             EEEEEcC
Q psy11518        122 LRTWNLV  128 (139)
Q Consensus       122 i~i~d~~  128 (139)
                      +.+|.+.
T Consensus       167 v~~fkIl  173 (395)
T PF08596_consen  167 VLTFKIL  173 (395)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999874

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=97.42  E-value=0.015  Score=42.97  Aligned_cols=76  Identities=14%  Similarity=0.295  Sum_probs=51.7

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEEeCC----------ceE---EEEE------EeCCCCcceeEEEEccC---CcEE
Q psy11518         56 TITCLKFTPEGSHLISCSDDGSIAIFRVGS----------WQL---EKLF------KKAHKGTAVNHISIHPS---GKLA  113 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~----------~~~---~~~~------~~~~~~~~v~~~~~~~~---~~~l  113 (139)
                      .|..+..+|+|++++..+..| |.+..+..          ++.   ...+      ........|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            578899999999999888766 44444321          111   1111      11223335889999995   5789


Q ss_pred             EEEcCCCeEEEEEcCCCce
Q psy11518        114 LSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus       114 ~~~~~d~~i~i~d~~~~~~  132 (139)
                      ++-..|+.+++||+...+.
T Consensus       165 ~vLtsdn~lR~y~~~~~~~  183 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQH  183 (717)
T ss_pred             EEEecCCEEEEEecCCCCC
Confidence            9999999999999976543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.41  E-value=0.024  Score=40.57  Aligned_cols=60  Identities=10%  Similarity=0.115  Sum_probs=41.7

Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      |.|.-+|+.+++..+........  ..+. ..-.+..++.++.+|.++.+|.++|+.+....+
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~--~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~  500 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPL--WGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT  500 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCC--CCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence            45777888888888877433221  1111 112455777788899999999999999988764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG2079|consensus

Probab=97.39  E-value=0.00042  Score=51.84  Aligned_cols=72  Identities=13%  Similarity=0.236  Sum_probs=57.5

Q ss_pred             CCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         65 EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        65 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .+..++.|+..|.+...|.... ..+.....+...+|++++|+.+|+.++.|-.+|.|.+||+..++.+..+.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~  169 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT  169 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee
Confidence            4556888888999999887654 22233355666679999999999999999999999999999988877654

>KOG2114|consensus

Probab=97.39  E-value=0.026  Score=41.88  Aligned_cols=120  Identities=12%  Similarity=0.134  Sum_probs=77.1

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEcc--C--CceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMV--K--RKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      ++..++-+-+.+|+|-.+|.|..+.=+  .  +....-......+|+.+.+..++...+-...-..|.+|.+.+..+...
T Consensus       129 s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~  208 (933)
T KOG2114|consen  129 SSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLK  208 (933)
T ss_pred             eEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCccee
Confidence            344444478889999999999888522  1  111112223457899999988777632222334699999985552333


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      . ..+++.++.|-++++....+++++. ..+.+|+....++...+.
T Consensus       209 ~-ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  209 V-LDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             e-eccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeec
Confidence            2 5666777899999987665555554 358888887666655543

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.37  E-value=0.012  Score=41.98  Aligned_cols=115  Identities=9%  Similarity=0.054  Sum_probs=68.6

Q ss_pred             eeEEEEec------CCcEEEEeCCCCeEEEEEccC-----CceeeEEEec-CC----CeEEEEECCCCCEEEEecCCCcE
Q psy11518         15 ASVRSVAA------TSKLAASSGADETVVLYDMVK-----RKQSGALMQH-EG----TITCLKFTPEGSHLISCSDDGSI   78 (139)
Q Consensus        15 ~~v~~~~~------~~~~l~~~~~~~~v~i~~~~~-----~~~~~~~~~~-~~----~v~~~~~~~~~~~l~~~~~d~~i   78 (139)
                      ..|..++|      +-..+++.-....|.+|.+..     ++.+.....+ ..    --..+.|+|....|+.-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            44555555      444666777788999999752     2322222111 11    12467899998888766655544


Q ss_pred             EEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEE-cCCCeEEEEEcCCC
Q psy11518         79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSV-GKDKTLRTWNLVKG  130 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~  130 (139)
                      .+++++.....-.......+. |.|.+|.+||+.|+++ +..=.-+|||-.+.
T Consensus       137 V~~sV~~d~srVkaDi~~~G~-IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGL-IHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EeeeeeeCCceEEEeccCCce-EEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            555554433333332233444 9999999999977655 44555778876543

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=97.35  E-value=0.011  Score=38.22  Aligned_cols=39  Identities=23%  Similarity=0.473  Sum_probs=34.6

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE
Q psy11518         54 EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      ...|..|+.+|+|+.||+...+|.|.+|++.+-......
T Consensus       229 ~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  229 QDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             CCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence            567899999999999999999999999999887766665

>KOG1832|consensus

Probab=97.34  E-value=0.00033  Score=51.78  Aligned_cols=83  Identities=22%  Similarity=0.370  Sum_probs=66.9

Q ss_pred             ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcC--CCeE
Q psy11518         45 KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGK--DKTL  122 (139)
Q Consensus        45 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i  122 (139)
                      +....+..|....+|++|+.+.+.|+.|+..|.|+++++.+|...... ..|... ++.+.=+.+|...++.+.  ....
T Consensus      1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-ncH~Sa-vT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-NCHQSA-VTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-cccccc-cccccccCCcceeeeeccccCchH
Confidence            455667788899999999999999999999999999999999888777 455554 888888888887766553  3357


Q ss_pred             EEEEcCC
Q psy11518        123 RTWNLVK  129 (139)
Q Consensus       123 ~i~d~~~  129 (139)
                      .+|++.+
T Consensus      1170 aLW~~~s 1176 (1516)
T KOG1832|consen 1170 ALWDASS 1176 (1516)
T ss_pred             HHhcccc
Confidence            7888854

>KOG3621|consensus

Probab=97.32  E-value=0.0008  Score=48.18  Aligned_cols=69  Identities=25%  Similarity=0.389  Sum_probs=53.5

Q ss_pred             EEEEecCCcEEEEeCCCCeEEEEEccCCceee-----EE-EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         17 VRSVAATSKLAASSGADETVVLYDMVKRKQSG-----AL-MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~-----~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +.+++.+..++|+|+..|.|.++-+....+..     .+ +.|...|+++.|++++..+.+|...|+|.+-.+..
T Consensus        81 ~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   81 VRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             EEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            44455578889999999999999876643221     11 23678899999999999999999999998877655

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.30  E-value=0.0086  Score=41.53  Aligned_cols=110  Identities=19%  Similarity=0.284  Sum_probs=65.2

Q ss_pred             EEEecCCcEEE-EeCCCCe--EEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCc--EEEEEeCCceEEEE
Q psy11518         18 RSVAATSKLAA-SSGADET--VVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGS--IAIFRVGSWQLEKL   91 (139)
Q Consensus        18 ~~~~~~~~~l~-~~~~~~~--v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~~~~~~   91 (139)
                      ..+++||+.|+ +...|+.  |.++|+..+. +..+..-.+.-..-.|+|+|++++ +.+..|.  |.+.+.........
T Consensus       243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri  321 (425)
T COG0823         243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL  321 (425)
T ss_pred             ccCCCCCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence            34556777765 4455665  4555665554 333433333334567999999886 5555665  56666666555333


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcC-CCe--EEEEEcCCCc
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGK-DKT--LRTWNLVKGR  131 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~  131 (139)
                      . .....  -..-.|+|||++++..+. +|.  |.+.|+.++.
T Consensus       322 T-~~~~~--~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         322 T-FSGGG--NSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             e-ccCCC--CcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            3 22222  226779999998887664 344  6777776655

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.29  E-value=0.017  Score=38.62  Aligned_cols=118  Identities=12%  Similarity=0.128  Sum_probs=79.8

Q ss_pred             cceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec----------CCCcEEEE
Q psy11518         12 SHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS----------DDGSIAIF   81 (139)
Q Consensus        12 ~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~   81 (139)
                      .|...|.+..+..      . .+.+.++|.++++.+..+..--  ...+..+|+++.++++.          ....|.+|
T Consensus         2 ~~rvyV~D~~~~~------~-~~rv~viD~d~~k~lGmi~~g~--~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~   72 (342)
T PF06433_consen    2 AHRVYVQDPVFFH------M-TSRVYVIDADSGKLLGMIDTGF--LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIW   72 (342)
T ss_dssp             TTEEEEEE-GGGG------S-SEEEEEEETTTTEEEEEEEEES--SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CcEEEEECCcccc------c-cceEEEEECCCCcEEEEeeccc--CCceeECCCCCEEEEEEEEEeccccccceeEEEEE
Confidence            3556666665421      1 2479999999999888877432  34567899999877542          23469999


Q ss_pred             EeCCceEEEEEEeCCC-C----cceeEEEEccCCcEEEEEc--CCCeEEEEEcCCCceeEEEec
Q psy11518         82 RVGSWQLEKLFKKAHK-G----TAVNHISIHPSGKLALSVG--KDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        82 d~~~~~~~~~~~~~~~-~----~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      |..+..+...+..+.. .    .....++++.|++++++..  -.-.|.|.|+..++.+..+.+
T Consensus        73 D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~  136 (342)
T PF06433_consen   73 DTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT  136 (342)
T ss_dssp             ETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG
T ss_pred             ecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC
Confidence            9999988887765543 1    1134568889999887764  456799999999888776653

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.28  E-value=0.024  Score=40.56  Aligned_cols=114  Identities=8%  Similarity=0.059  Sum_probs=71.1

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecC-CCeE---EEEECC-----CCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHE-GTIT---CLKFTP-----EGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~-~~v~---~~~~~~-----~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .+..++.++.++.|.-.|..+++.+..+.... ..+.   +.....     .+..++.++.++.+.-+|..+++.++...
T Consensus        68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~  147 (527)
T TIGR03075        68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKK  147 (527)
T ss_pred             ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecc
Confidence            35677777778899999999999887765321 1111   110110     23456677889999999999999988874


Q ss_pred             eCCCCc--ceeE-EEEccCCcEEEEEc-----CCCeEEEEEcCCCceeEEEe
Q psy11518         94 KAHKGT--AVNH-ISIHPSGKLALSVG-----KDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        94 ~~~~~~--~v~~-~~~~~~~~~l~~~~-----~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ......  .+.+ .... ++..++..+     .+|.|..+|.++|+.+..+.
T Consensus       148 ~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       148 NGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             cccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            322110  0111 1111 444443322     27899999999999987653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1008|consensus

Probab=97.24  E-value=3.4e-05  Score=54.47  Aligned_cols=111  Identities=14%  Similarity=0.153  Sum_probs=75.6

Q ss_pred             ecceeeEEEEec---CCcEEEEeC----CCCeEEEEEccCC--cee--eEEEe-cCCCeEEEEECCCCCEEEEecCCCcE
Q psy11518         11 HSHTASVRSVAA---TSKLAASSG----ADETVVLYDMVKR--KQS--GALMQ-HEGTITCLKFTPEGSHLISCSDDGSI   78 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~----~~~~v~i~~~~~~--~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (139)
                      .++..+|++++|   |.+.||+|-    .|..+.|||+.++  .+.  ..+.+ ......+++|..+.+.+.+|.....+
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~  178 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV  178 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence            456678888888   667788774    4567999999776  222  12222 33445688888888889999999999


Q ss_pred             EEEEeCCceEE-EEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEE
Q psy11518         79 AIFRVGSWQLE-KLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        79 ~~~d~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d  126 (139)
                      +++|++..... ..+   .... +..+...| .+.++++-. |+.|.+||
T Consensus       179 ~ifdlRqs~~~~~sv---nTk~-vqG~tVdp~~~nY~cs~~-dg~iAiwD  223 (783)
T KOG1008|consen  179 HIFDLRQSLDSVSSV---NTKY-VQGITVDPFSPNYFCSNS-DGDIAIWD  223 (783)
T ss_pred             hhhhhhhhhhhhhhh---hhhh-cccceecCCCCCceeccc-cCceeecc
Confidence            99999843222 222   1111 56677777 666666555 99999999

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=97.21  E-value=0.061  Score=41.16  Aligned_cols=79  Identities=13%  Similarity=0.123  Sum_probs=57.9

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEE----EeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         54 EGTITCLKFTPEGSHLISCSDDGSIAIF----RVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~----d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ...|.++.|.++...++.+..+|.|.+.    +....... .. ..-..+ |.+++|+||+..++..+.++++.+.+ ++
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E-~V-G~vd~G-I~a~~WSPD~Ella~vT~~~~l~~mt-~~  150 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE-IV-GSVDSG-ILAASWSPDEELLALVTGEGNLLLMT-RD  150 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE-EE-EEEcCc-EEEEEECCCcCEEEEEeCCCEEEEEe-cc
Confidence            4678999999999999999999999988    44433322 22 122333 99999999999999999999888774 45


Q ss_pred             CceeEEE
Q psy11518        130 GRSAYIT  136 (139)
Q Consensus       130 ~~~~~~~  136 (139)
                      ..++...
T Consensus       151 fd~i~E~  157 (928)
T PF04762_consen  151 FDPISEV  157 (928)
T ss_pred             ceEEEEe
Confidence            5555443

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.18  E-value=0.03  Score=38.95  Aligned_cols=95  Identities=22%  Similarity=0.311  Sum_probs=59.6

Q ss_pred             CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCc--EEEEEeCCceEEEEEEeCCCCcceeEEEEccCC
Q psy11518         34 ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGS--IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG  110 (139)
Q Consensus        34 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  110 (139)
                      ..+.++++++++....+. ..+.-..-+|+|+|+.++ +...||.  |.+.|+....... + ....+. -..-.|+|||
T Consensus       218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-L-t~~~gi-~~~Ps~spdG  293 (425)
T COG0823         218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-L-TNGFGI-NTSPSWSPDG  293 (425)
T ss_pred             ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-c-ccCCcc-ccCccCCCCC
Confidence            568888988876544443 122234568999998876 5556665  6677887776444 3 122222 2367899999


Q ss_pred             cEEEEEcC-CCe--EEEEEcCCCce
Q psy11518        111 KLALSVGK-DKT--LRTWNLVKGRS  132 (139)
Q Consensus       111 ~~l~~~~~-d~~--i~i~d~~~~~~  132 (139)
                      ++++-.++ .|+  |.++|++.+..
T Consensus       294 ~~ivf~Sdr~G~p~I~~~~~~g~~~  318 (425)
T COG0823         294 SKIVFTSDRGGRPQIYLYDLEGSQV  318 (425)
T ss_pred             CEEEEEeCCCCCcceEEECCCCCce
Confidence            98886654 444  66666665544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.15  E-value=0.0025  Score=42.99  Aligned_cols=84  Identities=12%  Similarity=0.117  Sum_probs=54.2

Q ss_pred             CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCC---------------
Q psy11518         33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHK---------------   97 (139)
Q Consensus        33 ~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---------------   97 (139)
                      .+.+.+||+++++....... ...+....|+|+|+.++-.. ++.|.+.+..++........+..               
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv   99 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEV   99 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHT
T ss_pred             ceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccc
Confidence            45788999988754433332 45678889999999988764 56899998877755443321200               


Q ss_pred             CcceeEEEEccCCcEEEEEcC
Q psy11518         98 GTAVNHISIHPSGKLALSVGK  118 (139)
Q Consensus        98 ~~~v~~~~~~~~~~~l~~~~~  118 (139)
                      -..-..+.|+||+++|+....
T Consensus       100 ~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen  100 FDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             SSSSBSEEE-TTSSEEEEEEE
T ss_pred             cccccceEECCCCCEEEEEEE
Confidence            011356889999999887653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.10  E-value=0.038  Score=38.63  Aligned_cols=55  Identities=24%  Similarity=0.233  Sum_probs=25.6

Q ss_pred             CCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         66 GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        66 ~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      |..|...+.+ .|.+||..+++.+..+.   .. +|..+.|++++.+++..+.+ .+.|++
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~---v~-~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRID---VS-AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEES---S--E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEe---cC-CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            4444444333 56666666666666651   11 15666677666666666544 455544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.08  E-value=0.039  Score=36.70  Aligned_cols=99  Identities=14%  Similarity=0.120  Sum_probs=62.8

Q ss_pred             EEEcc-CCceeeEEEecCCCeEEEEECCCCCEEEEecC-CCcEEEEEeCC--c----eEEEEEEeCCCCcceeEEEEccC
Q psy11518         38 LYDMV-KRKQSGALMQHEGTITCLKFTPEGSHLISCSD-DGSIAIFRVGS--W----QLEKLFKKAHKGTAVNHISIHPS  109 (139)
Q Consensus        38 i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~--~----~~~~~~~~~~~~~~v~~~~~~~~  109 (139)
                      +|-+. .+.....+..+-..-+.++|||+++.|..... .+.|.-+++..  +    +..... ........-.++...+
T Consensus       145 lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~-~~~~~G~PDG~~vDad  223 (307)
T COG3386         145 LYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVD-FDEEPGLPDGMAVDAD  223 (307)
T ss_pred             EEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEE-ccCCCCCCCceEEeCC
Confidence            44443 44444444444445578999999987766544 57788887652  1    111222 2222233677888888


Q ss_pred             CcEEEEEcCCC-eEEEEEcCCCceeEEEec
Q psy11518        110 GKLALSVGKDK-TLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       110 ~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~  138 (139)
                      |.+-+++..+| .|..|+.. ++.+..+.+
T Consensus       224 G~lw~~a~~~g~~v~~~~pd-G~l~~~i~l  252 (307)
T COG3386         224 GNLWVAAVWGGGRVVRFNPD-GKLLGEIKL  252 (307)
T ss_pred             CCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence            98776555554 89999998 888877764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.08  E-value=0.016  Score=38.84  Aligned_cols=58  Identities=14%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc-EEEE-EcCCCeEEEEEcCCCceeEEEe
Q psy11518         77 SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-LALS-VGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~-~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .|.++|+.+++.+..+...+.   +.+++.+.+.+ +|++ ...++.+.+||..+|+.+..+.
T Consensus       270 eVWv~D~~t~krv~Ri~l~~~---~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  270 EVWVYDLKTHKRVARIPLEHP---IDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEEEE---ESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEEECCCCeEEEEEeCCCc---cceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            477889999998888855433   77899998776 5554 4568999999999999988753

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.93  E-value=0.031  Score=40.54  Aligned_cols=97  Identities=7%  Similarity=0.105  Sum_probs=53.5

Q ss_pred             EEecCCcEEEEeC------CCC--eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC-CcEEEE--------
Q psy11518         19 SVAATSKLAASSG------ADE--TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD-GSIAIF--------   81 (139)
Q Consensus        19 ~~~~~~~~l~~~~------~~~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~--------   81 (139)
                      .++++|+.++...      .|.  .|.+++. .+.. ..+.. ....+.-+|+|+|..+.+.... ..+.+.        
T Consensus       356 aiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql  432 (591)
T PRK13616        356 ALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQL  432 (591)
T ss_pred             eECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEeccCCCceE
Confidence            4556777765444      233  5555554 2222 22221 1236788999998877665432 222222        


Q ss_pred             ---EeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEE
Q psy11518         82 ---RVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRT  124 (139)
Q Consensus        82 ---d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  124 (139)
                         +++.+....     .....|..+.|+|||..++... +++|.+
T Consensus       433 ~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        433 ARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             EEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence               332222211     1122399999999999887655 467766

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.91  E-value=0.11  Score=38.98  Aligned_cols=115  Identities=12%  Similarity=0.132  Sum_probs=73.2

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCC--------eEEEEEC----------------CCCCEEEEecCCCcE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGT--------ITCLKFT----------------PEGSHLISCSDDGSI   78 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~--------v~~~~~~----------------~~~~~l~~~~~d~~i   78 (139)
                      .+..++.++.++.|.-.|..+++.+..+......        ...+++-                ..+..++.++.|+.+
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            4667777888899999999999988877632211        1112221                123477788889999


Q ss_pred             EEEEeCCceEEEEEEeCCCC-------c-c--eeEEEEcc--CCcEEEEEcC----------CCeEEEEEcCCCceeEEE
Q psy11518         79 AIFRVGSWQLEKLFKKAHKG-------T-A--VNHISIHP--SGKLALSVGK----------DKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~-------~-~--v~~~~~~~--~~~~l~~~~~----------d~~i~i~d~~~~~~~~~~  136 (139)
                      .-.|.++++....+......       . +  -..+.-.|  .+..+++|+.          +|.|+-+|.++|+.+..+
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            99999999998876322110       0 0  00111112  2334555532          688999999999998876


Q ss_pred             e
Q psy11518        137 N  137 (139)
Q Consensus       137 ~  137 (139)
                      .
T Consensus       353 ~  353 (764)
T TIGR03074       353 D  353 (764)
T ss_pred             e
Confidence            4

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=96.88  E-value=0.075  Score=36.70  Aligned_cols=111  Identities=16%  Similarity=0.154  Sum_probs=66.2

Q ss_pred             EEEecCCcEEEEe-----CCCCeEEEEEccCCceeeEE-EecCCCeEEEEECCCCCEEEEecCCC-----------cEEE
Q psy11518         18 RSVAATSKLAASS-----GADETVVLYDMVKRKQSGAL-MQHEGTITCLKFTPEGSHLISCSDDG-----------SIAI   80 (139)
Q Consensus        18 ~~~~~~~~~l~~~-----~~~~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~-----------~i~~   80 (139)
                      ..+++++++++.+     +....++++|+++++.+... ..-  ....+.|.++++.++....+.           .|..
T Consensus       129 ~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            4556689988744     22346999999999776532 222  123499999988775443222           3677


Q ss_pred             EEeCCceE--EEEEEeCCCCcceeEEEEccCCcEEEEEc---CC-CeEEEEEcCCC
Q psy11518         81 FRVGSWQL--EKLFKKAHKGTAVNHISIHPSGKLALSVG---KD-KTLRTWNLVKG  130 (139)
Q Consensus        81 ~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d-~~i~i~d~~~~  130 (139)
                      |.+.+...  ...+...........+..++++++++...   .+ ..+.+.|+..+
T Consensus       207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            77765542  23332222211145788899999877543   23 45888888775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.88  E-value=0.011  Score=27.02  Aligned_cols=30  Identities=10%  Similarity=0.061  Sum_probs=24.9

Q ss_pred             eeEEEEccCC---cEEEEEcCCCeEEEEEcCCC
Q psy11518        101 VNHISIHPSG---KLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus       101 v~~~~~~~~~---~~l~~~~~d~~i~i~d~~~~  130 (139)
                      +.++.|+|+.   .+|+-+-..+.+.++|+++.
T Consensus         3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             eEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            8899999844   47888878899999999953

It contains a characteristic DLL sequence motif.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.87  E-value=0.044  Score=35.32  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=53.4

Q ss_pred             EEecCCCeEEEEECCCC-CEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         50 LMQHEGTITCLKFTPEG-SHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        50 ~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      +.+-...++.++|+|+. .++++....+.|..++. +++.+..+.....+. ...+++..++.++++.-.++.+.++++.
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D-~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGD-YEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SS-EEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCC-ceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            33444569999999974 46678888888888886 578888886665555 8899999888888777678999999884


Q ss_pred             C
Q psy11518        129 K  129 (139)
Q Consensus       129 ~  129 (139)
                      .
T Consensus        95 ~   95 (248)
T PF06977_consen   95 D   95 (248)
T ss_dssp             -
T ss_pred             c
Confidence            3

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.079  Score=36.36  Aligned_cols=118  Identities=16%  Similarity=0.240  Sum_probs=80.2

Q ss_pred             EEEEecCCcEEEEeCC---CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEe-cCCCcEEEEEeCCceEEE-E
Q psy11518         17 VRSVAATSKLAASSGA---DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC-SDDGSIAIFRVGSWQLEK-L   91 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~---~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~-~   91 (139)
                      -..+.++++.+.++..   ++.+.+.|..+.+.+.....-..+ ..++++|++..+... ..++.|.++|........ .
T Consensus       120 ~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~  198 (381)
T COG3391         120 GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGS  198 (381)
T ss_pred             eEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccc
Confidence            3445557766666655   689999999888887775443344 789999999966555 478889999977655543 1


Q ss_pred             EE-eCCCCcceeEEEEccCCcEEEEEcCC---CeEEEEEcCCCceeEE
Q psy11518         92 FK-KAHKGTAVNHISIHPSGKLALSVGKD---KTLRTWNLVKGRSAYI  135 (139)
Q Consensus        92 ~~-~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~  135 (139)
                      -. ..........+.++|++..+.+....   +.+...|..++.....
T Consensus       199 ~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~  246 (381)
T COG3391         199 VGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTAT  246 (381)
T ss_pred             cccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEe
Confidence            00 01112226779999999966655433   6899999988766543

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.82  E-value=0.03  Score=31.26  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             eEEEEECC---C-CCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         57 ITCLKFTP---E-GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        57 v~~~~~~~---~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      |+++++..   + .+.|+.|+.|..|++|+-.  +.+..+.  ... .|..++-... ..++.+-.+|+|-+|+
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~-~v~~L~~~~~-~~F~Y~l~NGTVGvY~   69 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETD-KVTSLCSLGG-GRFAYALANGTVGVYD   69 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--ccc-ceEEEEEcCC-CEEEEEecCCEEEEEe
Confidence            45555543   3 2578999999999999843  4555552  222 2777776655 4566666666555544

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.81  E-value=0.063  Score=34.80  Aligned_cols=110  Identities=9%  Similarity=-0.015  Sum_probs=69.8

Q ss_pred             CCcEEEEeCCCC--eEEEEEccCCceeeEEEecC-CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCc
Q psy11518         23 TSKLAASSGADE--TVVLYDMVKRKQSGALMQHE-GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT   99 (139)
Q Consensus        23 ~~~~l~~~~~~~--~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~   99 (139)
                      ++.++-+.+.-|  .|+.+|+.+++......-.. -.-..++.. +.+...-.-.++...+||..+.+.+..+.....  
T Consensus        55 ~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E--  131 (264)
T PF05096_consen   55 DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE--  131 (264)
T ss_dssp             TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS--
T ss_pred             CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCc--
Confidence            566666666544  89999999998765544211 111223332 334444556788999999999999888865544  


Q ss_pred             ceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        100 AVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                       =+.++  .+++.|+.......++++|..+.+.+..+.+
T Consensus       132 -GWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V  167 (264)
T PF05096_consen  132 -GWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV  167 (264)
T ss_dssp             ---EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-
T ss_pred             -ceEEE--cCCCEEEEECCccceEEECCcccceEEEEEE
Confidence             35666  4677777777778999999998888777654

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.78  E-value=0.0072  Score=44.82  Aligned_cols=67  Identities=15%  Similarity=0.258  Sum_probs=50.6

Q ss_pred             eEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518         16 SVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        16 ~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      .+.|++- ...+||+|+.+|.|++||-...+....+.+-..+|..+..+.+|++++..+.. .|.+++.
T Consensus       579 ~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlLi~t  646 (794)
T PF08553_consen  579 NFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLLIDT  646 (794)
T ss_pred             CceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence            4555555 66689999999999999954334344566778999999999999998765544 5777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2395|consensus

Probab=96.76  E-value=0.042  Score=38.90  Aligned_cols=96  Identities=19%  Similarity=0.237  Sum_probs=62.4

Q ss_pred             EEeCCCCeEEEEEccCCc--eeeEEEecC----CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         28 ASSGADETVVLYDMVKRK--QSGALMQHE----GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        28 ~~~~~~~~v~i~~~~~~~--~~~~~~~~~----~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                      +.|-.+..|.-||++-..  .+...++|+    ....|.+-. ..-+++.|+.+|.|++||- .+..-... .+.-+.+|
T Consensus       398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTA-lPgLG~~I  474 (644)
T KOG2395|consen  398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTA-LPGLGDAI  474 (644)
T ss_pred             EEeecCCceEEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhc-ccccCCce
Confidence            456678889999986432  222223332    233444433 3447899999999999996 44433333 45666779


Q ss_pred             eEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518        102 NHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      ..+..+.+|++|+..+. ..+.+.++
T Consensus       475 ~hVdvtadGKwil~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  475 KHVDVTADGKWILATCK-TYLLLIDT  499 (644)
T ss_pred             eeEEeeccCcEEEEecc-cEEEEEEE
Confidence            99999999999887664 45555554

>KOG3617|consensus

Probab=96.74  E-value=0.0024  Score=47.23  Aligned_cols=66  Identities=14%  Similarity=0.195  Sum_probs=54.9

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      |+.|..-.|+.|-+-|.+.+|...+.+.......|..+|..+.||++|..+.++..-|.+.+|...
T Consensus        66 CWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   66 CWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            333355567788889999999987776666666799999999999999999999999999999875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.68  E-value=0.053  Score=37.96  Aligned_cols=55  Identities=16%  Similarity=0.299  Sum_probs=22.4

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      |.+|...+. +.|.+||.++++.+..+...  +|..+.|++++++++..+.+ .+.+++
T Consensus       117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  117 GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            444443332 24555555555555554421  24555555555555555433 344444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=96.62  E-value=0.091  Score=34.09  Aligned_cols=103  Identities=20%  Similarity=0.216  Sum_probs=62.3

Q ss_pred             CCcEEEEeCCCCeEEEEEccCC-ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE---------
Q psy11518         23 TSKLAASSGADETVVLYDMVKR-KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF---------   92 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~---------   92 (139)
                      .++.|+.|+.+| +.+++.... ......+  ...|..+...|+-+.++.-+ |+.+.++++.........         
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~   81 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSR   81 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccc
Confidence            678899999998 888988333 3333322  23489999988877766554 489999998765433311         


Q ss_pred             ----EeCCCCcceeEEE--EccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         93 ----KKAHKGTAVNHIS--IHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        93 ----~~~~~~~~v~~~~--~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                          ......+ +...+  -...+...++....++|.+|.....
T Consensus        82 ~~~~~~~~~~~-v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~  124 (275)
T PF00780_consen   82 SLPTKLPETKG-VSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP  124 (275)
T ss_pred             cccccccccCC-eeEEeeccccccceEEEEEECCEEEEEEEECC
Confidence                1111112 33333  1234444445555568999887653

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.62  E-value=0.13  Score=37.55  Aligned_cols=71  Identities=14%  Similarity=0.131  Sum_probs=49.3

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEc--cCCcEEEEEcCCCeEEEEEc
Q psy11518         56 TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIH--PSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~  127 (139)
                      ..+.+.-+.-++..+.-+....+.+||.+.+...........+. |.+++|.  |+++.+++.|..+.|.+|.-
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~-I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDP-IRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCc-eeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            34445445544544454445579999999888665553333444 9999987  58899999999999999853

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.61  E-value=0.078  Score=34.85  Aligned_cols=98  Identities=12%  Similarity=0.236  Sum_probs=65.8

Q ss_pred             EEecCCcEEEEeCC-----CCeEEEEEccCC-ceeeEEEecCCCeEEEEECCCCCEEEEecC------------------
Q psy11518         19 SVAATSKLAASSGA-----DETVVLYDMVKR-KQSGALMQHEGTITCLKFTPEGSHLISCSD------------------   74 (139)
Q Consensus        19 ~~~~~~~~l~~~~~-----~~~v~i~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------   74 (139)
                      ++++||.+|++.-.     -|.|-+||...+ +.+.++..|.-....+.|.+||+.++.+..                  
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            45558888876543     468999998754 556778888777788999999999887653                  


Q ss_pred             CCcEEEEEeCCceEEEEEEeC--CCCcceeEEEEccCCcEEEEE
Q psy11518         75 DGSIAIFRVGSWQLEKLFKKA--HKGTAVNHISIHPSGKLALSV  116 (139)
Q Consensus        75 d~~i~~~d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~  116 (139)
                      .-.+.+.|..++.++.+...+  .+.-++..++..+||...+-+
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEE
Confidence            113444555556555544333  233348889998888766544

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=96.56  E-value=0.053  Score=38.93  Aligned_cols=75  Identities=16%  Similarity=0.330  Sum_probs=46.0

Q ss_pred             CCCCEEEEecCCCcEEEEEeCC----ceEEEE-EEeCC-------------------CCcceeEEEEcc----CCcEEEE
Q psy11518         64 PEGSHLISCSDDGSIAIFRVGS----WQLEKL-FKKAH-------------------KGTAVNHISIHP----SGKLALS  115 (139)
Q Consensus        64 ~~~~~l~~~~~d~~i~~~d~~~----~~~~~~-~~~~~-------------------~~~~v~~~~~~~----~~~~l~~  115 (139)
                      ++...++.+..||.+.......    +..... .....                   .......++.++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3666788888899888777654    211111 11110                   112245566666    7789999


Q ss_pred             EcCCCeEEEEEcCCCceeEEEec
Q psy11518        116 VGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       116 ~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .+.|+.+++||+.+++.+....+
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~~  258 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATIDL  258 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEET
T ss_pred             EeCCCeEEEEECCCCeEEEEecc
Confidence            99999999999999999776643

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>KOG1920|consensus

Probab=96.54  E-value=0.17  Score=39.23  Aligned_cols=68  Identities=16%  Similarity=0.207  Sum_probs=52.9

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEE
Q psy11518         55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW  125 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  125 (139)
                      ..|.++.|..+.+.++.+...|.|.+-|..+....-.- .. ..+ |.+++|+||+++++..+.++++.+-
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg-~v-d~G-I~aaswS~Dee~l~liT~~~tll~m  136 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG-NV-DNG-ISAASWSPDEELLALITGRQTLLFM  136 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeee-ec-cCc-eEEEeecCCCcEEEEEeCCcEEEEE
Confidence            57999999999999999999999999887665443322 22 233 9999999999999998887776553

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.54  E-value=0.073  Score=34.97  Aligned_cols=81  Identities=9%  Similarity=0.161  Sum_probs=63.1

Q ss_pred             ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         52 QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        52 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      +-...++++.|+|+.+.|.+......-.++=..+|+.+..+....-.. ...+.+..++++.++--.++.+.++.+....
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~D-pE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSD-PETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCC-hhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            444568999999999988888777777777777899998886555444 6778888888888887778889888877664


Q ss_pred             ee
Q psy11518        132 SA  133 (139)
Q Consensus       132 ~~  133 (139)
                      .+
T Consensus       162 ~~  163 (316)
T COG3204         162 TV  163 (316)
T ss_pred             cE
Confidence            33

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.42  E-value=0.14  Score=33.99  Aligned_cols=104  Identities=13%  Similarity=0.144  Sum_probs=55.0

Q ss_pred             eeEEEEe--cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE-E
Q psy11518         15 ASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK-L   91 (139)
Q Consensus        15 ~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~-~   91 (139)
                      ..+..+.  .+|.+++++.....+.-||.-...=...-..-...|..+.|.|++.....+ ..|.|..=+........ .
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~  223 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE  223 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc
Confidence            4444544  388999999888888888753221111112235689999999998876655 77888877622221111 1


Q ss_pred             --EEeCCCCcceeEEEEccCCcEEEEEcCC
Q psy11518         92 --FKKAHKGTAVNHISIHPSGKLALSVGKD  119 (139)
Q Consensus        92 --~~~~~~~~~v~~~~~~~~~~~l~~~~~d  119 (139)
                        .........+..++|.++....++|+..
T Consensus       224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  224 PIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             -B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence              1111222237889999887777766543

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.40  E-value=0.14  Score=37.38  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=41.3

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEE---EEeCCceEEE----EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         54 EGTITCLKFTPEGSHLISCSDDGSIAI---FRVGSWQLEK----LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~~---~d~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      ...|..+.|+|||..++... ++.|.+   -....+...-    .+ .......+.++.|..++.++ ++..++...+|.
T Consensus       447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l-~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~  523 (591)
T PRK13616        447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREV-GPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWY  523 (591)
T ss_pred             CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEe-ecccCCccccceEecCCEEE-EEecCCCCceEE
Confidence            45799999999999887654 466766   4434443111    12 11222225789999998855 444433333443

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.38  E-value=0.19  Score=34.82  Aligned_cols=81  Identities=20%  Similarity=0.212  Sum_probs=52.4

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE------------------------------------------EEEE
Q psy11518         56 TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE------------------------------------------KLFK   93 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~------------------------------------------~~~~   93 (139)
                      .|+.++|.++..-|+.+...|.+.+|.....+..                                          ..+-
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4677788877777788888888777754221110                                          1110


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .. ..++|++++.+ |=-+++.|.++|.+.|.|+|....++...+
T Consensus        83 ~~-~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i  125 (395)
T PF08596_consen   83 DA-KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENI  125 (395)
T ss_dssp             ----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEG
T ss_pred             ec-cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccc
Confidence            11 23448888876 666999999999999999998888877543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.32  E-value=0.087  Score=33.32  Aligned_cols=71  Identities=13%  Similarity=0.123  Sum_probs=50.6

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEE-------E-------ecCCCeEEEEECCCCCEEEEecCCCcEEEE
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGAL-------M-------QHEGTITCLKFTPEGSHLISCSDDGSIAIF   81 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~   81 (139)
                      ++..+..+++++++-+.+|.+++||+.+.+.+..-       .       .....|..+..+.+|.-+++-+ +|....|
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y   92 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY   92 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence            44556668999999999999999999887654321       1       2446678888888887766554 5678888


Q ss_pred             EeCCce
Q psy11518         82 RVGSWQ   87 (139)
Q Consensus        82 d~~~~~   87 (139)
                      +..-+.
T Consensus        93 ~~~L~~   98 (219)
T PF07569_consen   93 SPDLGC   98 (219)
T ss_pred             ccccce
Confidence            765433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.23  E-value=0.17  Score=32.90  Aligned_cols=112  Identities=16%  Similarity=0.190  Sum_probs=75.8

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcc--
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA--  100 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--  100 (139)
                      ++++..-.-.++...+||..+-+.+.++.... .=..++  .++..|+..+....|.++|..+.+....+.....+.+  
T Consensus        99 ~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~-EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~  175 (264)
T PF05096_consen   99 GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPG-EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS  175 (264)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEEE-SS-S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred             CCEEEEEEecCCeEEEEccccceEEEEEecCC-cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence            44455555678899999999998888886543 225555  4677888888888999999988877776644433333  


Q ss_pred             -eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        101 -VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       101 -v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                       +..+.|- +|...+-.=....|...|..+|+.+..+.+
T Consensus       176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDl  213 (264)
T PF05096_consen  176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDL  213 (264)
T ss_dssp             -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-
T ss_pred             CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEh
Confidence             4556665 677777666777888999999999887765

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.21  E-value=0.23  Score=34.17  Aligned_cols=110  Identities=13%  Similarity=0.238  Sum_probs=77.7

Q ss_pred             EecCCc-EEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC---CCcEEEEEeCCceEEEEEEeC
Q psy11518         20 VAATSK-LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD---DGSIAIFRVGSWQLEKLFKKA   95 (139)
Q Consensus        20 ~~~~~~-~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~   95 (139)
                      +.+.+. ..+....++.|.+.|..+.+......--. ....++++|++..+..+..   ++.+.+.|..+....... ..
T Consensus        81 v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~-~v  158 (381)
T COG3391          81 VNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI-PV  158 (381)
T ss_pred             eCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE-ec
Confidence            334455 44455556889999977777666554333 4478899999877765544   688999999888887775 33


Q ss_pred             CCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcCCCcee
Q psy11518         96 HKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLVKGRSA  133 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~  133 (139)
                      .. . ...+++.|+|+.++... .++.|.++|.......
T Consensus       159 G~-~-P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         159 GN-T-PTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CC-C-cceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            22 2 38899999999666555 7899999997765544

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.18  E-value=0.25  Score=34.36  Aligned_cols=39  Identities=13%  Similarity=0.110  Sum_probs=31.0

Q ss_pred             cceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         99 TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +++..++.||++++++.-..+|.+.+.+..-.+....+.
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            348999999999999999999999888766555554443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.96  E-value=0.2  Score=34.33  Aligned_cols=98  Identities=16%  Similarity=0.218  Sum_probs=49.6

Q ss_pred             EEccCCceeeEEEecCCCeEEE-----EECCCCCEEE-EecCCC--cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCC
Q psy11518         39 YDMVKRKQSGALMQHEGTITCL-----KFTPEGSHLI-SCSDDG--SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG  110 (139)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~v~~~-----~~~~~~~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  110 (139)
                      -|..+|..+..+.........+     +|.++|+.|+ .+..+|  .+...|+.+++..+....+..  ......++|++
T Consensus        15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~--~~~g~~~s~~~   92 (386)
T PF14583_consen   15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD--NTFGGFLSPDD   92 (386)
T ss_dssp             E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B---TTT-EE-TTS
T ss_pred             eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC--CccceEEecCC
Confidence            4667777776665443322222     4567887654 555555  477778888887776632222  13356678888


Q ss_pred             cEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        111 KLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       111 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +.++-.-....|.-.|+++.+....+.+
T Consensus        93 ~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   93 RALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             SEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            8876665567888999999887655543

>KOG2444|consensus

Probab=95.96  E-value=0.028  Score=35.41  Aligned_cols=70  Identities=19%  Similarity=0.147  Sum_probs=47.4

Q ss_pred             eEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecC-CCeEEEEECCCCCEEEEe--cCCCcEEEEEeCC
Q psy11518         16 SVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHE-GTITCLKFTPEGSHLISC--SDDGSIAIFRVGS   85 (139)
Q Consensus        16 ~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~~~   85 (139)
                      .+.+.-+   ++.+..++..++.++.|+...++.+...-.|. .++.....+..++.++..  +.|..++.|++..
T Consensus       103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            4445555   55688899999999999998888776666665 444444445555556555  6666677777643

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.83  E-value=0.52  Score=35.10  Aligned_cols=103  Identities=11%  Similarity=0.099  Sum_probs=68.8

Q ss_pred             CCcEEEEeCCCCeEEEEEccCC--------------------ceeeEEEecCCCeEEEEEC--CCCCEEEEecCCCcEEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKR--------------------KQSGALMQHEGTITCLKFT--PEGSHLISCSDDGSIAI   80 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~--------------------~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~   80 (139)
                      +.+.|+.+..||.|.+|..++-                    ++...+. ....++.++++  ...+++|+++....|.+
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            7778999999999999976321                    0112222 34567888888  77888998888888888


Q ss_pred             EEeCCceEEEEE--EeCCCCcceeEEEEccCC---c---EEEEEcCCCeEEEEEc
Q psy11518         81 FRVGSWQLEKLF--KKAHKGTAVNHISIHPSG---K---LALSVGKDKTLRTWNL  127 (139)
Q Consensus        81 ~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~~---~---~l~~~~~d~~i~i~d~  127 (139)
                      |-..........  ...+. ..|.+++|-++.   .   ++++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~-hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHS-HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccc-cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            765432111111  11122 238889988744   2   7778888999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=95.80  E-value=0.36  Score=32.98  Aligned_cols=112  Identities=9%  Similarity=-0.032  Sum_probs=69.4

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecC--CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcc
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHE--GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA  100 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~  100 (139)
                      .+..+.++..+|.|.-.|..+++.+.....-.  ..+..-.+..+|+ +..++.++.+..+|.++++..+...... ...
T Consensus        67 ~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~~~  144 (370)
T COG1520          67 GDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-SPY  144 (370)
T ss_pred             eCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-CeE
Confidence            34455666788888888988888664332211  1122222222555 6777888889999998899988885444 111


Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +..-..-.+ ..+...+.++.+...|..+++.+....
T Consensus       145 ~~~~~v~~~-~~v~~~s~~g~~~al~~~tG~~~W~~~  180 (370)
T COG1520         145 YASPPVVGD-GTVYVGTDDGHLYALNADTGTLKWTYE  180 (370)
T ss_pred             EecCcEEcC-cEEEEecCCCeEEEEEccCCcEEEEEe
Confidence            122222223 344444478999999999998877654

>PHA02713 hypothetical protein; Provisional

Probab=95.77  E-value=0.15  Score=36.90  Aligned_cols=108  Identities=12%  Similarity=0.101  Sum_probs=58.5

Q ss_pred             cCCcEEEEeCCCC-----------------------eEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCC
Q psy11518         22 ATSKLAASSGADE-----------------------TVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDG   76 (139)
Q Consensus        22 ~~~~~l~~~~~~~-----------------------~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~   76 (139)
                      .++.+.+.|+.++                       .+..||+.+.+  .+..+.........+.+  +++..+.|+.++
T Consensus       397 ~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~  474 (557)
T PHA02713        397 LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH--KDDIYVVCDIKD  474 (557)
T ss_pred             ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE--CCEEEEEeCCCC
Confidence            3788888887652                       46678876652  12222111111112222  566667776542


Q ss_pred             ------cEEEEEeCC-ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCC--eEEEEEcCCCcee
Q psy11518         77 ------SIAIFRVGS-WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK--TLRTWNLVKGRSA  133 (139)
Q Consensus        77 ------~i~~~d~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~  133 (139)
                            .+..||..+ .+....-..+..........+  ++++.++||.++  .+..||..+.+..
T Consensus       475 ~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        475 EKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             CCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccccc
Confidence                  356788876 343322211222111222222  788899999888  7888998887654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.72  E-value=0.072  Score=24.37  Aligned_cols=31  Identities=32%  Similarity=0.598  Sum_probs=25.4

Q ss_pred             CCeEEEEECCCC---CEEEEecCCCcEEEEEeCC
Q psy11518         55 GTITCLKFTPEG---SHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        55 ~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~   85 (139)
                      +.+.++.|+|++   .+|+-.-..+.+.++|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            357899999854   4888888889999999985

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=95.40  E-value=0.38  Score=30.51  Aligned_cols=70  Identities=10%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             CCCCCEEEEecCCCcEEEEEeCCceEEEE-------EEe-----CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         63 TPEGSHLISCSDDGSIAIFRVGSWQLEKL-------FKK-----AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        63 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~-------~~~-----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ..++.++.+-..+|.+++||+.+.+....       +..     ......|..+.++.+|.-+++-+ +|..+.||..-+
T Consensus        19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLG   97 (219)
T ss_pred             EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccccc
Confidence            34678899999999999999988765321       110     02333488888888888766655 467888887655


Q ss_pred             cee
Q psy11518        131 RSA  133 (139)
Q Consensus       131 ~~~  133 (139)
                      ..+
T Consensus        98 ~W~  100 (219)
T PF07569_consen   98 CWI  100 (219)
T ss_pred             eeE
Confidence            443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.35  E-value=0.56  Score=32.49  Aligned_cols=71  Identities=15%  Similarity=0.183  Sum_probs=45.9

Q ss_pred             EEEEECCCCCEEEEe-cCCC----cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcC-----------CCe
Q psy11518         58 TCLKFTPEGSHLISC-SDDG----SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGK-----------DKT  121 (139)
Q Consensus        58 ~~~~~~~~~~~l~~~-~~d~----~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------d~~  121 (139)
                      ...+++|+++++|-+ +..|    .++++|+.+++.+...... ..  ...+.|.++++.++....           ...
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            467889999988744 3334    4999999999776543111 11  233999999887655542           233


Q ss_pred             EEEEEcCCCc
Q psy11518        122 LRTWNLVKGR  131 (139)
Q Consensus       122 i~i~d~~~~~  131 (139)
                      |..|.+.+..
T Consensus       204 v~~~~~gt~~  213 (414)
T PF02897_consen  204 VYRHKLGTPQ  213 (414)
T ss_dssp             EEEEETTS-G
T ss_pred             EEEEECCCCh
Confidence            7777777654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2395|consensus

Probab=95.31  E-value=0.072  Score=37.78  Aligned_cols=66  Identities=17%  Similarity=0.266  Sum_probs=49.7

Q ss_pred             EEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518         17 VRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        17 v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      ..|+.- ...++++|+.+|.|++||--..+....+++-..+|..+..+.+|++++..+ +..+.+.++
T Consensus       433 Fsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  433 FSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             cceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            445444 566899999999999999733344455788889999999999999876554 446777665

>KOG4441|consensus

Probab=95.24  E-value=0.81  Score=33.41  Aligned_cols=113  Identities=17%  Similarity=0.147  Sum_probs=63.4

Q ss_pred             EEEecCCcEEEEeCCCC------eEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCCc-----EEEEEeC
Q psy11518         18 RSVAATSKLAASSGADE------TVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDGS-----IAIFRVG   84 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~------~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~~~d~~   84 (139)
                      .....+|.+.++|+.++      ++..||+.+.+  .+..+..-........+  ++...+.|+.|+.     +..||..
T Consensus       422 gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~  499 (571)
T KOG4441|consen  422 GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPE  499 (571)
T ss_pred             EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE--CCEEEEECCccCCCccceEEEEcCC
Confidence            33445888889888554      56788887652  22222211222222223  6677788887763     6778877


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCC-----eEEEEEcCCCceeE
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK-----TLRTWNLVKGRSAY  134 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~  134 (139)
                      +.+....-........+....  -+++..++|+.|+     .|..||..+.+...
T Consensus       500 ~~~W~~v~~m~~~rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~  552 (571)
T KOG4441|consen  500 TNQWTMVAPMTSPRSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWTE  552 (571)
T ss_pred             CCceeEcccCccccccccEEE--ECCEEEEEecccCccccceeEEcCCCCCceee
Confidence            665544321122221122222  2678888888765     47788877766543

>KOG3630|consensus

Probab=95.22  E-value=0.065  Score=41.29  Aligned_cols=88  Identities=10%  Similarity=0.148  Sum_probs=54.2

Q ss_pred             EEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe-CC-CCcceeEEE
Q psy11518         28 ASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK-AH-KGTAVNHIS  105 (139)
Q Consensus        28 ~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~-~~~~v~~~~  105 (139)
                      ++...|+.|++..+........--......++++|+|.|+.++.|-..|++..|-.. .+....+.. +. ....|.+++
T Consensus       172 av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~  250 (1405)
T KOG3630|consen  172 AVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVT  250 (1405)
T ss_pred             hhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEE
Confidence            344455556555443222211111234567999999999999999999999988754 332222211 11 124589999


Q ss_pred             EccCCcEEEEE
Q psy11518        106 IHPSGKLALSV  116 (139)
Q Consensus       106 ~~~~~~~l~~~  116 (139)
                      |-....++++-
T Consensus       251 Wl~t~eflvvy  261 (1405)
T KOG3630|consen  251 WLSTQEFLVVY  261 (1405)
T ss_pred             EecceeEEEEe
Confidence            99888877653

>smart00564 PQQ beta-propeller repeat

Probab=95.19  E-value=0.089  Score=22.12  Aligned_cols=25  Identities=16%  Similarity=0.112  Sum_probs=21.6

Q ss_pred             EEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518        112 LALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       112 ~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .++.++.++.+..+|.++|+.+...
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W~~   32 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILWTY   32 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEEEc
Confidence            5777888999999999999988764

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.18  E-value=0.55  Score=31.11  Aligned_cols=92  Identities=15%  Similarity=0.267  Sum_probs=55.4

Q ss_pred             cEEEEeCCCC-eEEEEEccCCceeeEEEecCCC--eEEEEECCCCCEEEEecC-----CCcEEEEEeCCce-EEEEEEeC
Q psy11518         25 KLAASSGADE-TVVLYDMVKRKQSGALMQHEGT--ITCLKFTPEGSHLISCSD-----DGSIAIFRVGSWQ-LEKLFKKA   95 (139)
Q Consensus        25 ~~l~~~~~~~-~v~i~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~~~-~~~~~~~~   95 (139)
                      ..++.+-.-| .-.++|....+...++...++.  .-.-.|||+|.+|...-.     -|.|-+||.+.+- .+..+  .
T Consensus        81 ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~--~  158 (366)
T COG3490          81 RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEF--S  158 (366)
T ss_pred             ceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceeccc--c
Confidence            3344444333 4567787777665555432222  223478999999875422     3678999987432 23333  2


Q ss_pred             CCCcceeEEEEccCCcEEEEEcC
Q psy11518         96 HKGTAVNHISIHPSGKLALSVGK  118 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~~~~  118 (139)
                      ..+--...+.|.+||+.++.+..
T Consensus       159 t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         159 THGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             cCCcCcceeEEecCCcEEEEeCC
Confidence            22222677899999999887753

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.13  E-value=0.13  Score=34.89  Aligned_cols=56  Identities=20%  Similarity=0.302  Sum_probs=40.6

Q ss_pred             CCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         75 DGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        75 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      .+.+.++|+.+++.......   ...+....|+|+|+.++... ++.|.++++.+++..+
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~   77 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ   77 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE
T ss_pred             ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE
Confidence            45688999998776655422   23378899999999988886 4689999988875443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.01  E-value=0.79  Score=32.05  Aligned_cols=78  Identities=13%  Similarity=0.132  Sum_probs=53.7

Q ss_pred             eeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEEC----CCC----------------CEE-EEe
Q psy11518         14 TASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT----PEG----------------SHL-ISC   72 (139)
Q Consensus        14 ~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~----~~~----------------~~l-~~~   72 (139)
                      .....+++|++.+.++...-|.|.++|+.++..+...++.++.  .+.|.    +..                .+| +-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc--eEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            3455677789999999888899999999998887777765543  22221    111                122 345


Q ss_pred             cCCCcEEEEEeCCceEEEEEE
Q psy11518         73 SDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        73 ~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      -.-|.|.+|+++.+..+..+.
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEE
Confidence            667888889888887776663

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=95.01  E-value=0.65  Score=31.08  Aligned_cols=91  Identities=15%  Similarity=0.154  Sum_probs=53.2

Q ss_pred             EEEEEccCCceeeEEE----e-cCCCeEEEEECCCCCEEEEecC---------CCcEEEEEeC-CceEEEEEEeCCCCcc
Q psy11518         36 VVLYDMVKRKQSGALM----Q-HEGTITCLKFTPEGSHLISCSD---------DGSIAIFRVG-SWQLEKLFKKAHKGTA  100 (139)
Q Consensus        36 v~i~~~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~-~~~~~~~~~~~~~~~~  100 (139)
                      +.+++++++..+..+.    + .....+.+...|+|.+.++...         ...-.+|.+. .+...... ..+-.. 
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-~~~~~~-  164 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-DDDLTI-  164 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-cCcEEe-
Confidence            5556665554422221    1 1134467778889988775544         1123466555 44444444 222222 


Q ss_pred             eeEEEEccCCcEEEEEc-CCCeEEEEEcC
Q psy11518        101 VNHISIHPSGKLALSVG-KDKTLRTWNLV  128 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~-~d~~i~i~d~~  128 (139)
                      .+.++|+||++.++.+. ..+.|+-|++.
T Consensus       165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         165 PNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             cCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            57899999998776664 45888888775

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.01  E-value=0.65  Score=31.06  Aligned_cols=111  Identities=16%  Similarity=0.172  Sum_probs=66.1

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccC-CceeeEEEe--cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC------
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVK-RKQSGALMQ--HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS------   85 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~-~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~------   85 (139)
                      ..+.++...++++++|..-..+.++.... ...+..+..  ....++++.+-++++.++.++.+|.+.++....      
T Consensus       130 ~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~  209 (321)
T PF03178_consen  130 FYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSR  209 (321)
T ss_dssp             SSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTT
T ss_pred             EEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccc
Confidence            36777777677999998888888776544 232333322  334578888876667999999999999998753      


Q ss_pred             -ce-EEEEEEeCCCCcceeEE---EEccC--C------cEEEEEcCCCeEEEE
Q psy11518         86 -WQ-LEKLFKKAHKGTAVNHI---SIHPS--G------KLALSVGKDKTLRTW  125 (139)
Q Consensus        86 -~~-~~~~~~~~~~~~~v~~~---~~~~~--~------~~l~~~~~d~~i~i~  125 (139)
                       +. .......-|.+..|+++   ++.|.  +      ..++.++.+|.|...
T Consensus       210 ~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  210 DGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             TTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             cccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence             21 22222233444447776   55552  2      247788888888743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PHA02713 hypothetical protein; Provisional

Probab=94.89  E-value=1  Score=32.76  Aligned_cols=108  Identities=9%  Similarity=-0.009  Sum_probs=56.6

Q ss_pred             cCCcEEEEeCCCC-----eEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCC------------------
Q psy11518         22 ATSKLAASSGADE-----TVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDG------------------   76 (139)
Q Consensus        22 ~~~~~l~~~~~~~-----~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------------------   76 (139)
                      .++.+.+.|+.++     .+..||+.+.+  .+..+.........+.+  +++..+.|+.++                  
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCccccccccccccccccccc
Confidence            3788888888654     47789987642  11111111111122233  566677776542                  


Q ss_pred             -----cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC------CeEEEEEcCC-Ccee
Q psy11518         77 -----SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD------KTLRTWNLVK-GRSA  133 (139)
Q Consensus        77 -----~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~-~~~~  133 (139)
                           .+..||..+.+....-....... -.+++ .-++++.+.||.+      ..+..||.++ .+..
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m~~~r~-~~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~  494 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNFWTGTI-RPGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE  494 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCCCcccc-cCcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence                 36678877655432221111111 11122 2357777888754      2467899887 5544

>KOG4460|consensus

Probab=94.88  E-value=0.4  Score=34.39  Aligned_cols=79  Identities=16%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEEe---------CCceEE---E------EEEeCCCCcceeEEEEccCC---cEEE
Q psy11518         56 TITCLKFTPEGSHLISCSDDGSIAIFRV---------GSWQLE---K------LFKKAHKGTAVNHISIHPSG---KLAL  114 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~---------~~~~~~---~------~~~~~~~~~~v~~~~~~~~~---~~l~  114 (139)
                      .|..+..++.|..++-.+.+|.+.++=.         ..++..   +      .+......-.+...+|+|+.   ..++
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4677888999999988888886554321         122111   1      11112222236678999966   5788


Q ss_pred             EEcCCCeEEEEEcCCCceeE
Q psy11518        115 SVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus       115 ~~~~d~~i~i~d~~~~~~~~  134 (139)
                      .-..|..+++||+...+.++
T Consensus       185 iL~sdnviRiy~lS~~tely  204 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTELY  204 (741)
T ss_pred             EEecCcEEEEEecCCcchhh
Confidence            88889999999998766554

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=94.86  E-value=0.62  Score=30.16  Aligned_cols=116  Identities=11%  Similarity=0.103  Sum_probs=71.8

Q ss_pred             ecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEec-CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         11 HSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQH-EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      .+-...+..+.+   ++.++++....+.|..++. .++.+....-. .+..-.+++..++.++++.-.++.+.++++...
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~   96 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD   96 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence            344444667776   4668888889999988886 57777665532 245688999888888777777899999988332


Q ss_pred             e------EEEEEE--eC--CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         87 Q------LEKLFK--KA--HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        87 ~------~~~~~~--~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      .      ....+.  ..  ++.+ +..++|+|.++.++.+-+..-..+|.+.
T Consensus        97 ~~~~~~~~~~~~~l~~~~~~N~G-~EGla~D~~~~~L~v~kE~~P~~l~~~~  147 (248)
T PF06977_consen   97 TTSLDRADVQKISLGFPNKGNKG-FEGLAYDPKTNRLFVAKERKPKRLYEVN  147 (248)
T ss_dssp             -TT--EEEEEEEE---S---SS---EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             ccccchhhceEEecccccCCCcc-eEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence            1      112221  22  2333 8999999988877777776666666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.80  E-value=0.93  Score=31.84  Aligned_cols=114  Identities=11%  Similarity=-0.009  Sum_probs=51.8

Q ss_pred             eeEEEEEeecceeeEEEEec----CC-cEEEEeCCCCeEEEE-EccCC----ceeeEEEe-----------------cCC
Q psy11518          3 TLTQTFVTHSHTASVRSVAA----TS-KLAASSGADETVVLY-DMVKR----KQSGALMQ-----------------HEG   55 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~----~~-~~l~~~~~~~~v~i~-~~~~~----~~~~~~~~-----------------~~~   55 (139)
                      +.+|++...........+.|    +. .-++.+....+|..| ..+.+    +.+..+..                 -..
T Consensus       233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~  312 (461)
T PF05694_consen  233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPP  312 (461)
T ss_dssp             EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE--
T ss_pred             cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCC
Confidence            45666666555556777877    22 223333334444444 33433    12222211                 034


Q ss_pred             CeEEEEECCCCCEEE-EecCCCcEEEEEeCCceE---EEEEEeCC---------------CCcceeEEEEccCCcEEEEE
Q psy11518         56 TITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQL---EKLFKKAH---------------KGTAVNHISIHPSGKLALSV  116 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~---~~~~~~~~---------------~~~~v~~~~~~~~~~~l~~~  116 (139)
                      -|+.+..|.|.++|. ++-..|.++.||+.....   ........               .++ ..-+..|.||+.|...
T Consensus       313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg-PqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG-PQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-----EEE-TTSSEEEEE
T ss_pred             ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC-CCeEEEccCCeEEEEE
Confidence            578999999999886 555699999999976432   22221111               111 4567788889877655


Q ss_pred             c
Q psy11518        117 G  117 (139)
Q Consensus       117 ~  117 (139)
                      +
T Consensus       392 n  392 (461)
T PF05694_consen  392 N  392 (461)
T ss_dssp             -
T ss_pred             e
Confidence            3

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.78  E-value=0.91  Score=31.68  Aligned_cols=56  Identities=14%  Similarity=0.220  Sum_probs=41.2

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc
Q psy11518         55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK  111 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  111 (139)
                      +++..++.||+++++|.-..+|.+.+....-.+....+....... +..+.|..+..
T Consensus       217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~-p~~~~WCG~da  272 (410)
T PF04841_consen  217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSP-PKQMAWCGNDA  272 (410)
T ss_pred             CCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCC-CcEEEEECCCc
Confidence            579999999999999998899999888765555555554442333 66777776544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.77  E-value=0.67  Score=30.04  Aligned_cols=108  Identities=12%  Similarity=0.130  Sum_probs=62.1

Q ss_pred             EEEEecCCcEEEEeC---CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE-eCCceEEE-E
Q psy11518         17 VRSVAATSKLAASSG---ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR-VGSWQLEK-L   91 (139)
Q Consensus        17 v~~~~~~~~~l~~~~---~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d-~~~~~~~~-~   91 (139)
                      -..+++++..++...   ....+.++..  +....... ....+..-+|++++..++....+....++. ..++.... .
T Consensus        28 s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~  104 (253)
T PF10647_consen   28 SPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE  104 (253)
T ss_pred             ceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence            345556777665544   3345555543  32222221 223677889999988887777676667664 23333222 2


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEc---CCCeEEEEEc
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVG---KDKTLRTWNL  127 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~  127 (139)
                      .........|..+.++|||..++...   .++.|.+=-+
T Consensus       105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen  105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            21222221599999999999776554   3566766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=94.75  E-value=0.68  Score=30.05  Aligned_cols=115  Identities=10%  Similarity=0.110  Sum_probs=63.5

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecC------------CCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHE------------GTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      ..+..+.|-++.++.|..++ ..+.|+.++.....+....            .++..+... ++.+|++.  +....+.|
T Consensus       139 ~~~~~i~~~~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~  214 (275)
T PF00780_consen  139 DPPSSIAFLGNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN  214 (275)
T ss_pred             CCcEEEEEeCCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc
Confidence            55666777677888887555 6778888665543332111            123333332 34555543  33333334


Q ss_pred             eCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         83 VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      . .|+........-... +..+++  ...+++..+. +.|.||++.+++.++.+..
T Consensus       215 ~-~G~~~r~~~i~W~~~-p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  215 K-NGEPSRKSTIQWSSA-PQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             C-CCCcCcccEEEcCCc-hhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            3 333322111111222 555666  3567777666 4599999999999988765

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.70  E-value=0.16  Score=22.58  Aligned_cols=31  Identities=10%  Similarity=0.145  Sum_probs=23.0

Q ss_pred             cCCcEEEEEc-CCCeEEEEEcCCCceeEEEec
Q psy11518        108 PSGKLALSVG-KDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       108 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      |++++++++. .++.|.++|..+++.+..+.+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            5667665544 688999999999888777653

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.69  E-value=1.4  Score=33.41  Aligned_cols=105  Identities=9%  Similarity=0.070  Sum_probs=66.8

Q ss_pred             CCeEEEEEccCCceeeEEEec---------CC--------Ce-EEEEECCCCCEEEEec------------------CCC
Q psy11518         33 DETVVLYDMVKRKQSGALMQH---------EG--------TI-TCLKFTPEGSHLISCS------------------DDG   76 (139)
Q Consensus        33 ~~~v~i~~~~~~~~~~~~~~~---------~~--------~v-~~~~~~~~~~~l~~~~------------------~d~   76 (139)
                      +|.|+-+|.++++.+..+..-         .+        .+ ...+++++...+..+.                  ..+
T Consensus       335 ~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~  414 (764)
T TIGR03074       335 SGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSS  414 (764)
T ss_pred             CcEEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccc
Confidence            688999999999988776521         00        11 2234555444333221                  124


Q ss_pred             cEEEEEeCCceEEEEEEeCCCCc-------ceeEEEEcc-CCc---EEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         77 SIAIFRVGSWQLEKLFKKAHKGT-------AVNHISIHP-SGK---LALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~~~~~~~-------~v~~~~~~~-~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .|.-.|.++++..+.++..+++.       +..-+.+.. +|+   .++.++.+|.+.++|-++|+.+...+
T Consensus       415 slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       415 SLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             eEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            56677889999999886644321       111122322 553   78889999999999999999987654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4441|consensus

Probab=94.68  E-value=0.95  Score=33.06  Aligned_cols=109  Identities=15%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             CCcEEEEeCCC------CeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCCc-----EEEEEeCCceEE
Q psy11518         23 TSKLAASSGAD------ETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDGS-----IAIFRVGSWQLE   89 (139)
Q Consensus        23 ~~~~l~~~~~~------~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-----i~~~d~~~~~~~   89 (139)
                      ++...++|+.+      ..+..||+.+.+  .+..+...........+  +|...+.|+.||.     +..||..+.+..
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~  409 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWT  409 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCccc
Confidence            77888999988      356778876653  11112212222222222  6778889988875     677887665433


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCC------CeEEEEEcCCCceeEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKD------KTLRTWNLVKGRSAYI  135 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~  135 (139)
                      ..-............  .-+|++.++||.+      ..+..||..+++....
T Consensus       410 ~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~  459 (571)
T KOG4441|consen  410 PVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI  459 (571)
T ss_pred             ccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeec
Confidence            222111111101112  2368888888844      4578889888766543

>PF01011 PQQ: PQQ enzyme repeat family

Probab=94.66  E-value=0.16  Score=22.39  Aligned_cols=27  Identities=11%  Similarity=0.020  Sum_probs=22.7

Q ss_pred             EEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        112 LALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       112 ~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .++.++.+|.+.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            355668999999999999999988764

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.56  E-value=0.47  Score=34.21  Aligned_cols=70  Identities=11%  Similarity=0.093  Sum_probs=42.1

Q ss_pred             CCcEEEEeCCCCeEEEEEccC----CceeeEEE--e--------------------cCCCeEEEEECC----CCCEEEEe
Q psy11518         23 TSKLAASSGADETVVLYDMVK----RKQSGALM--Q--------------------HEGTITCLKFTP----EGSHLISC   72 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~----~~~~~~~~--~--------------------~~~~v~~~~~~~----~~~~l~~~   72 (139)
                      +...++.+..||.+.......    +.......  .                    .......++.+.    +..++++.
T Consensus       157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl  236 (547)
T PF11715_consen  157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL  236 (547)
T ss_dssp             SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred             CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence            566677777778777766553    21111110  0                    012345556665    67889999


Q ss_pred             cCCCcEEEEEeCCceEEEEE
Q psy11518         73 SDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        73 ~~d~~i~~~d~~~~~~~~~~   92 (139)
                      +.|+.+++||+.+++.+...
T Consensus       237 ~~D~~LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  237 SRDHTLRIWSLETGQCLATI  256 (547)
T ss_dssp             ETTSEEEEEETTTTCEEEEE
T ss_pred             eCCCeEEEEECCCCeEEEEe
Confidence            99999999999999986554

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.26  E-value=1.3  Score=31.18  Aligned_cols=99  Identities=15%  Similarity=0.215  Sum_probs=51.3

Q ss_pred             CCCeEEEEEccCCceeeEEEecC--CCeEEEEECC--CCCE-EEEecCCCcEEEE-EeCCceE--EEEEEeCCC------
Q psy11518         32 ADETVVLYDMVKRKQSGALMQHE--GTITCLKFTP--EGSH-LISCSDDGSIAIF-RVGSWQL--EKLFKKAHK------   97 (139)
Q Consensus        32 ~~~~v~i~~~~~~~~~~~~~~~~--~~v~~~~~~~--~~~~-l~~~~~d~~i~~~-d~~~~~~--~~~~~~~~~------   97 (139)
                      ...++.+||..+.+.++++.--.  .....+.|..  +..+ ++.+.-...|..| ....+..  ...+..+..      
T Consensus       220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~  299 (461)
T PF05694_consen  220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWI  299 (461)
T ss_dssp             S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS-
T ss_pred             ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccc
Confidence            56799999999999999887432  2345677754  4444 3333334444443 3233332  222211110      


Q ss_pred             -----------CcceeEEEEccCCcEEEEEc-CCCeEEEEEcCCC
Q psy11518         98 -----------GTAVNHISIHPSGKLALSVG-KDKTLRTWNLVKG  130 (139)
Q Consensus        98 -----------~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~  130 (139)
                                 ..-|+.+..|.|.++|.... .+|.++-||+...
T Consensus       300 lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP  344 (461)
T PF05694_consen  300 LPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP  344 (461)
T ss_dssp             --GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred             ccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence                       12278999999999887776 5899999999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA03098 kelch-like protein; Provisional

Probab=94.22  E-value=1.5  Score=31.64  Aligned_cols=108  Identities=8%  Similarity=0.040  Sum_probs=55.5

Q ss_pred             cCCcEEEEeCCC------CeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCC--------cEEEEEeCC
Q psy11518         22 ATSKLAASSGAD------ETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDG--------SIAIFRVGS   85 (139)
Q Consensus        22 ~~~~~l~~~~~~------~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--------~i~~~d~~~   85 (139)
                      .++.+.+.|+.+      ..+..||+.+.+  .+..+.........+..  ++...+.|+.+.        .+..||..+
T Consensus       388 ~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~  465 (534)
T PHA03098        388 VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVT  465 (534)
T ss_pred             ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCC
Confidence            367777777732      457888887642  11111111111122222  455666665432        277888876


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCcee
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGRSA  133 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~  133 (139)
                      .+....-...........+.  .+++.++.||.+     ..+.+||..+.+..
T Consensus       466 ~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        466 NKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             CceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            65433221111111011222  267777888754     57899998877554

>KOG3630|consensus

Probab=94.13  E-value=0.28  Score=38.19  Aligned_cols=97  Identities=11%  Similarity=-0.006  Sum_probs=60.8

Q ss_pred             EeCCCCeEEEEEccCC--------ceee---EEEecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeCCceEEEEEEeCC
Q psy11518         29 SSGADETVVLYDMVKR--------KQSG---ALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGSWQLEKLFKKAH   96 (139)
Q Consensus        29 ~~~~~~~v~i~~~~~~--------~~~~---~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~   96 (139)
                      ....+..|..||+++-        +++.   +.........++.|+|.-. ..+....|+.|++..+......... .+.
T Consensus       119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p~  197 (1405)
T KOG3630|consen  119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FPV  197 (1405)
T ss_pred             EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cCc
Confidence            3334558889998653        1111   1112233456788988533 4567778888888776543322111 122


Q ss_pred             CCcceeEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518         97 KGTAVNHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        97 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                       ....++++|+|.|+.++.|...|++.=|-.
T Consensus       198 -t~~~Tav~WSprGKQl~iG~nnGt~vQy~P  227 (1405)
T KOG3630|consen  198 -TNSQTAVLWSPRGKQLFIGRNNGTEVQYEP  227 (1405)
T ss_pred             -ccceeeEEeccccceeeEecCCCeEEEeec
Confidence             223799999999999999999998876643

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.09  E-value=0.89  Score=28.70  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=62.1

Q ss_pred             cEEEEeCCCCeEEEEEcc--CCceeeEEEecCCCeEEEEECCCCCEEEEecCCC------cEEEE---EeC--Cce----
Q psy11518         25 KLAASSGADETVVLYDMV--KRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG------SIAIF---RVG--SWQ----   87 (139)
Q Consensus        25 ~~l~~~~~~~~v~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~~---d~~--~~~----   87 (139)
                      +.|..+...+.|.+|++.  ..+.+.+|..- +.|..+.++..|++++|-=.+.      .+++|   +..  ...    
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            455444666889999987  33556666644 7889999999999998764322      34543   221  001    


Q ss_pred             -----------------EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         88 -----------------LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        88 -----------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                                       ....++.+-... +.+++..|..--|+.|+ ++.+.+|.+....
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElPl~~~-p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~  166 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELPLSEP-PLCIACCPVTGNLLVGC-GNKLVLFTLKYQT  166 (215)
T ss_pred             EEcccccccCCCCccccceEEEEecCCCC-CCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence                             122222233323 67788888444444454 3578888776543

>KOG1916|consensus

Probab=94.00  E-value=0.1  Score=39.50  Aligned_cols=108  Identities=13%  Similarity=0.237  Sum_probs=60.6

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEE-----------EECCCCCEEEEecCCCcEEEEEeCC-----c
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL-----------KFTPEGSHLISCSDDGSIAIFRVGS-----W   86 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~~~~d~~i~~~d~~~-----~   86 (139)
                      +.-++..+-.++++++........ ..+.+|...+..+           ..+|||+.++.++.||.++.|.+.-     .
T Consensus       194 ~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~  272 (1283)
T KOG1916|consen  194 NKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVH  272 (1283)
T ss_pred             ccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccH
Confidence            556777777888888776654321 2223344333322           3689999999999999999887632     2


Q ss_pred             eEEEEEEeCCCCcc-eeEEEEccCC---------cEEEEEc-CCCeEEEEEcCCCcee
Q psy11518         87 QLEKLFKKAHKGTA-VNHISIHPSG---------KLALSVG-KDKTLRTWNLVKGRSA  133 (139)
Q Consensus        87 ~~~~~~~~~~~~~~-v~~~~~~~~~---------~~l~~~~-~d~~i~i~d~~~~~~~  133 (139)
                      .++... .+|.+.+ +..+ ++.+.         .++++++ ..+-+.+|.-..-+.+
T Consensus       273 rclhew-kphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  273 RCLHEW-KPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             hhhhcc-CCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            223333 3344332 3333 33221         2334444 3455888876554443

>PHA02790 Kelch-like protein; Provisional

Probab=93.11  E-value=2.3  Score=30.37  Aligned_cols=104  Identities=12%  Similarity=-0.028  Sum_probs=54.9

Q ss_pred             cCCcEEEEeCCCC---eEEEEEccCCce--eeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCC
Q psy11518         22 ATSKLAASSGADE---TVVLYDMVKRKQ--SGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH   96 (139)
Q Consensus        22 ~~~~~l~~~~~~~---~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~   96 (139)
                      .++++.+.|+.++   .+..||+.+.+=  ...+.........+.+  +++..+.|+   ....||..+.+....-....
T Consensus       361 ~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~--~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~  435 (480)
T PHA02790        361 INNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF--GRRLFLVGR---NAEFYCESSNTWTLIDDPIY  435 (480)
T ss_pred             ECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE--CCEEEEECC---ceEEecCCCCcEeEcCCCCC
Confidence            3788888887553   466788765421  1111111111122222  556666663   46788887665443221122


Q ss_pred             CCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCce
Q psy11518         97 KGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGRS  132 (139)
Q Consensus        97 ~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~  132 (139)
                      ... -.+++ --++++.+.||.+     ..+..||..+++.
T Consensus       436 ~r~-~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        436 PRD-NPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             Ccc-ccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            111 11222 2367888888754     4688999887765

>KOG4499|consensus

Probab=93.06  E-value=1.6  Score=28.27  Aligned_cols=81  Identities=12%  Similarity=0.147  Sum_probs=55.4

Q ss_pred             EEEEECCCCCEE-EEecCCCcEEEEE--eCCceE-----EEEEEeC--CCCcceeEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518         58 TCLKFTPEGSHL-ISCSDDGSIAIFR--VGSWQL-----EKLFKKA--HKGTAVNHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        58 ~~~~~~~~~~~l-~~~~~d~~i~~~d--~~~~~~-----~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      +.++|+.+.+.+ .+-+.+-.|.-||  +.++..     +..+...  ......-.++...+|.+.++.-..++|..+|.
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            567888766655 4556677787787  555542     2233221  11112455777778998888888999999999


Q ss_pred             CCCceeEEEec
Q psy11518        128 VKGRSAYITNL  138 (139)
Q Consensus       128 ~~~~~~~~~~~  138 (139)
                      .+|+.+..+.+
T Consensus       241 ~tGK~L~eikl  251 (310)
T KOG4499|consen  241 TTGKILLEIKL  251 (310)
T ss_pred             CCCcEEEEEEc
Confidence            99999988765

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=92.82  E-value=0.42  Score=21.12  Aligned_cols=31  Identities=13%  Similarity=0.305  Sum_probs=22.7

Q ss_pred             CCCCEEEE-ecCCCcEEEEEeCCceEEEEEEe
Q psy11518         64 PEGSHLIS-CSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        64 ~~~~~l~~-~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      |+++.+.+ .-.++.|.++|..++.....+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            45665554 44578899999988888877744

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=92.79  E-value=0.33  Score=19.79  Aligned_cols=25  Identities=4%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEE
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTW  125 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~  125 (139)
                      +..++.+++|+.+++-....+|.+|
T Consensus         4 P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    4 PHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcEEEEeCCCCEEEEECCCCEEEEC
Confidence            5678888888888887777777664

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=92.32  E-value=1.4  Score=25.75  Aligned_cols=72  Identities=11%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             EEECCCCCEEEEecCCCcEEEEEeCCc--------eEEEEEEeCCCCcceeEEE---Ecc--CCcEEEEEcCCCeEEEEE
Q psy11518         60 LKFTPEGSHLISCSDDGSIAIFRVGSW--------QLEKLFKKAHKGTAVNHIS---IHP--SGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        60 ~~~~~~~~~l~~~~~d~~i~~~d~~~~--------~~~~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~~d~~i~i~d  126 (139)
                      -.|......|+.+..-|+|.+.+....        ..+..+.....   |++++   |.|  +...|+.|+. ..+..||
T Consensus         4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~---italaaG~l~~~~~~D~LliGt~-t~llaYD   79 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQE---ITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD   79 (136)
T ss_pred             EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCc---eEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence            356555567777778888888876533        23344422222   55554   433  2345666654 5788999


Q ss_pred             cCCCceeEE
Q psy11518        127 LVKGRSAYI  135 (139)
Q Consensus       127 ~~~~~~~~~  135 (139)
                      ..+..-++.
T Consensus        80 V~~N~d~Fy   88 (136)
T PF14781_consen   80 VENNSDLFY   88 (136)
T ss_pred             cccCchhhh
Confidence            987765543

>PHA03098 kelch-like protein; Provisional

Probab=92.20  E-value=3.3  Score=29.90  Aligned_cols=108  Identities=11%  Similarity=0.095  Sum_probs=54.8

Q ss_pred             cCCcEEEEeCCCC------eEEEEEccCCceee--EEEecCCCeEEEEECCCCCEEEEecCCC-----cEEEEEeCCceE
Q psy11518         22 ATSKLAASSGADE------TVVLYDMVKRKQSG--ALMQHEGTITCLKFTPEGSHLISCSDDG-----SIAIFRVGSWQL   88 (139)
Q Consensus        22 ~~~~~l~~~~~~~------~v~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~   88 (139)
                      .++..++.|+.++      .+..||+.+.+-..  .+.........+.+  +++.++.|+.++     .+..||..+.+.
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W  370 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKW  370 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence            3677777777543      46678876653211  11111112222233  566777777652     366788766544


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCC------CeEEEEEcCCCcee
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKD------KTLRTWNLVKGRSA  133 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~  133 (139)
                      ...-..+.... -.+++ .-++++++.||.+      ..+..||+.+.+..
T Consensus       371 ~~~~~lp~~r~-~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        371 REEPPLIFPRY-NPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             eeCCCcCcCCc-cceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            32211111111 11122 2367777777732      45888998876543

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.14  E-value=0.77  Score=32.96  Aligned_cols=61  Identities=20%  Similarity=0.334  Sum_probs=47.2

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      ...++++|+..|-|++||--..+....+++-...|-.+..+.+|.++++.+.. .+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            56789999999999999965555555667777889999999999987665543 67777763

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=92.00  E-value=3.1  Score=31.65  Aligned_cols=77  Identities=9%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             CCeEEEEECC-CCCEEEEecCCCcEEEEEeCCce----EEEEEEeCCCC---------cceeEEEEccCCcEEEEEcCCC
Q psy11518         55 GTITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQ----LEKLFKKAHKG---------TAVNHISIHPSGKLALSVGKDK  120 (139)
Q Consensus        55 ~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~  120 (139)
                      .+...++|+| +...+|..+..|...+|++....    ..........+         ..-..+.|.++...|++++. .
T Consensus       146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~  224 (765)
T PF10214_consen  146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-S  224 (765)
T ss_pred             CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-C
Confidence            3567899999 55689999999999999992111    11111011111         11347889888888887765 4


Q ss_pred             eEEEEEcCCCce
Q psy11518        121 TLRTWNLVKGRS  132 (139)
Q Consensus       121 ~i~i~d~~~~~~  132 (139)
                      .+.++|+++...
T Consensus       225 ~l~~~d~~~~~~  236 (765)
T PF10214_consen  225 KLMLIDFESNWQ  236 (765)
T ss_pred             ceEEEECCCCCc
Confidence            688899987755

These proteins are found in fungi.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=91.91  E-value=1.5  Score=25.52  Aligned_cols=108  Identities=16%  Similarity=0.116  Sum_probs=63.9

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCc--------eeeEEEecCCCeEEEE---ECC--CCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRK--------QSGALMQHEGTITCLK---FTP--EGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~--------~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ..+.|++++..+.|.|+++....        .+..+. -...|++++   |.|  +...|+.|+.. .+..||+.+..-+
T Consensus         9 ~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t-~llaYDV~~N~d~   86 (136)
T PF14781_consen    9 VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQT-SLLAYDVENNSDL   86 (136)
T ss_pred             CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccc-eEEEEEcccCchh
Confidence            34468888889999999876432        233333 344567764   332  34566777654 6999999877654


Q ss_pred             EEEEeCCCCcceeEEEEcc---CCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         90 KLFKKAHKGTAVNHISIHP---SGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ..-  .-..+ +.++.+..   ...-++..+....|.-||..-.+....
T Consensus        87 Fyk--e~~DG-vn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   87 FYK--EVPDG-VNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             hhh--hCccc-eeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            332  22233 56665532   233445555567788888765555443

>KOG4499|consensus

Probab=91.75  E-value=2.4  Score=27.45  Aligned_cols=82  Identities=11%  Similarity=0.052  Sum_probs=53.7

Q ss_pred             EEEEeCCCCeEEEEE--ccCCc-----eeeEEEe---cC-CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe
Q psy11518         26 LAASSGADETVVLYD--MVKRK-----QSGALMQ---HE-GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        26 ~l~~~~~~~~v~i~~--~~~~~-----~~~~~~~---~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      +.++-+.+-+|.-||  ..++.     .+..++.   .+ ...-.++...+|++.++.-..++|...|..+++.+..+..
T Consensus       172 fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl  251 (310)
T KOG4499|consen  172 FYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL  251 (310)
T ss_pred             EEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc
Confidence            445666777887787  55542     2222321   01 1112344566788888887788899999999999998866


Q ss_pred             CCCCcceeEEEEccC
Q psy11518         95 AHKGTAVNHISIHPS  109 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~  109 (139)
                      + . .++++.||...
T Consensus       252 P-t-~qitsccFgGk  264 (310)
T KOG4499|consen  252 P-T-PQITSCCFGGK  264 (310)
T ss_pred             C-C-CceEEEEecCC
Confidence            6 3 33999999753

>KOG2377|consensus

Probab=91.74  E-value=3.3  Score=29.57  Aligned_cols=89  Identities=9%  Similarity=0.002  Sum_probs=53.5

Q ss_pred             CCcEEEEeCCCCeEEEEEccC---CceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE--EeCCC
Q psy11518         23 TSKLAASSGADETVVLYDMVK---RKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF--KKAHK   97 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~   97 (139)
                      |.+..+.+...|.+.-|.++.   .-++..-...+++|.++.|++|.+.+|.--.++.|.+++....+.....  .....
T Consensus        32 DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k  111 (657)
T KOG2377|consen   32 DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTK  111 (657)
T ss_pred             cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccC
Confidence            333333333334444454432   2334444456779999999999999999999999999987443332222  11222


Q ss_pred             CcceeEEEEccCCc
Q psy11518         98 GTAVNHISIHPSGK  111 (139)
Q Consensus        98 ~~~v~~~~~~~~~~  111 (139)
                      ...|...+|..+..
T Consensus       112 ~~~IlGF~W~~s~e  125 (657)
T KOG2377|consen  112 NANILGFCWTSSTE  125 (657)
T ss_pred             cceeEEEEEecCee
Confidence            22377788876543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=91.71  E-value=2.8  Score=28.15  Aligned_cols=65  Identities=20%  Similarity=0.207  Sum_probs=44.5

Q ss_pred             EecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEcc------CCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP------SGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        71 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .+..-|.|-+||.. +..++.+.....-...+.|+..|      .+.+|+---.||+|..||..+++.+..+
T Consensus       217 ~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L  287 (336)
T TIGR03118       217 AGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL  287 (336)
T ss_pred             cCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence            33445678899875 56666663444433467777765      5666766667999999999988866544

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.29  E-value=1.7  Score=27.50  Aligned_cols=48  Identities=13%  Similarity=0.252  Sum_probs=32.8

Q ss_pred             CEEEEecCCCcEEEEEeCCce--EEEEEEeCCCCcceeEEEEccCCcEEEEEc
Q psy11518         67 SHLISCSDDGSIAIFRVGSWQ--LEKLFKKAHKGTAVNHISIHPSGKLALSVG  117 (139)
Q Consensus        67 ~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  117 (139)
                      ..|..+...+.|.+|++.+..  +...+  ..-+ +|..+.++..|.++++-=
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F--~Tv~-~V~~l~y~~~GDYlvTlE   78 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTF--STVG-RVLQLVYSEAGDYLVTLE   78 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEE--cchh-heeEEEeccccceEEEEE
Confidence            344444556679999998433  44444  3333 389999999999999864

>KOG1898|consensus

Probab=91.23  E-value=6.1  Score=31.13  Aligned_cols=93  Identities=11%  Similarity=0.131  Sum_probs=60.4

Q ss_pred             eeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEE---ecCCCeEEEEECCCC------CEEEEecCCCcEEEEEeC
Q psy11518         14 TASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALM---QHEGTITCLKFTPEG------SHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        14 ~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~------~~l~~~~~d~~i~~~d~~   84 (139)
                      ...+.+...+...++.+..++.+..+.......+..+.   .-...+.|+++.++.      ++++.++.|++++++.+.
T Consensus       539 ~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~  618 (1205)
T KOG1898|consen  539 RVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLD  618 (1205)
T ss_pred             ceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEec
Confidence            34555555577777777788888777765444444443   234567888887643      578999999999999988


Q ss_pred             CceEEEEEEeCCCCcceeEEEE
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISI  106 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~  106 (139)
                      ....+..+....-+.++.++++
T Consensus       619 p~d~l~~ls~q~l~~~~~s~~i  640 (1205)
T KOG1898|consen  619 PSDCLQPLSVQGLSSPPESLCI  640 (1205)
T ss_pred             CcceEEEccccccCCCccceEE
Confidence            6666655544433333444443

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=90.97  E-value=1.5  Score=23.60  Aligned_cols=43  Identities=12%  Similarity=0.148  Sum_probs=28.1

Q ss_pred             EeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEe
Q psy11518         29 SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC   72 (139)
Q Consensus        29 ~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~   72 (139)
                      .+..+|.+.-||+.+++....+.+- ...+.+++++++..++.+
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~   74 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVA   74 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEE
T ss_pred             cCCCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEE
Confidence            3456788999999888765444443 345899999999976554

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171

Probab=90.90  E-value=5.1  Score=31.01  Aligned_cols=88  Identities=13%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEE-ecCCC-----cEEEEEeCCce-EEEEEEeC
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLIS-CSDDG-----SIAIFRVGSWQ-LEKLFKKA   95 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~-----~i~~~d~~~~~-~~~~~~~~   95 (139)
                      +.++.......+.|.+-|.....+...-..+...+.+-+|||+|+.++- .+.++     .|.+-|+.+.. .+-++  .
T Consensus       318 ~tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl--~  395 (912)
T TIGR02171       318 KAKLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKL--P  395 (912)
T ss_pred             eeeEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEe--e
Confidence            4444444444458888887665554431346778888999999999986 44444     47777876533 22333  2


Q ss_pred             CCCcceeEEEEccCCcE
Q psy11518         96 HKGTAVNHISIHPSGKL  112 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~~  112 (139)
                      .+...|..-...++|..
T Consensus       396 ve~aaiprwrv~e~gdt  412 (912)
T TIGR02171       396 VENAAIPRWRVLENGDT  412 (912)
T ss_pred             cccccccceEecCCCCe
Confidence            22233555555666653

This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.

>KOG1896|consensus

Probab=90.85  E-value=7.2  Score=31.23  Aligned_cols=112  Identities=11%  Similarity=0.157  Sum_probs=62.6

Q ss_pred             cceeeEEEEec-CCcEEEEeCCCCeEEEEEccCC-ceeeE-EEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce-
Q psy11518         12 SHTASVRSVAA-TSKLAASSGADETVVLYDMVKR-KQSGA-LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ-   87 (139)
Q Consensus        12 ~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~-~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-   87 (139)
                      +..++|..++- +|.++.+  ....|.+|+++.. ..+.. |.  .-++.-.+..-=.++++.|+--..|.+...+... 
T Consensus      1095 E~KGtVsavceV~G~l~~~--~GqKI~v~~l~r~~~ligVaFi--D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~ 1170 (1366)
T KOG1896|consen 1095 EQKGTVSAVCEVRGHLLSS--QGQKIIVRKLDRDSELIGVAFI--DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPY 1170 (1366)
T ss_pred             hcccceEEEEEeccEEEEc--cCcEEEEEEeccCCcceeeEEe--ccceeEEehhhhhhheehhhhhhceEEEEEccCce
Confidence            45567777665 6766553  3478999998433 32211 21  1122222222234566666665666666554322 


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCc--EEEEEcCCCeEEEEEc
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGK--LALSVGKDKTLRTWNL  127 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~  127 (139)
                      ....+......-.+.++.|--+|.  .++++..++.|++|-.
T Consensus      1171 rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1171 RLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred             EEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEe
Confidence            222332333333477888887776  5678888999988844

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=90.80  E-value=0.78  Score=20.03  Aligned_cols=28  Identities=21%  Similarity=0.520  Sum_probs=17.6

Q ss_pred             CCCeEEEEECCCCCEEE-EecCC--CcEEEE
Q psy11518         54 EGTITCLKFTPEGSHLI-SCSDD--GSIAIF   81 (139)
Q Consensus        54 ~~~v~~~~~~~~~~~l~-~~~~d--~~i~~~   81 (139)
                      ...-....|+|+|+.++ ++..+  |.-.||
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            34557889999999886 44444  554444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.79  E-value=5.8  Score=29.99  Aligned_cols=113  Identities=15%  Similarity=0.281  Sum_probs=67.2

Q ss_pred             eeeEEEEecCCcEEEEeCCCCeEEEEEccCCce------eeEEE----------------ecCCCeEEEEECC--CCCEE
Q psy11518         14 TASVRSVAATSKLAASSGADETVVLYDMVKRKQ------SGALM----------------QHEGTITCLKFTP--EGSHL   69 (139)
Q Consensus        14 ~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~------~~~~~----------------~~~~~v~~~~~~~--~~~~l   69 (139)
                      ....+++.- .+++++|. .+.|.||++.....      ...+.                .....|+.+....  +...|
T Consensus        40 KNNLtalsq-~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVL  117 (717)
T PF08728_consen   40 KNNLTALSQ-RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVL  117 (717)
T ss_pred             ccceeEEec-CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEE
Confidence            344444442 55666655 68899999854322      11110                0112355554433  45678


Q ss_pred             EEecCCCcEEEEEeCC-------c----e-------EEEEEEeCCCCcceeEEEEc--cCCcEEEEEcCCCeEEEEEcCC
Q psy11518         70 ISCSDDGSIAIFRVGS-------W----Q-------LEKLFKKAHKGTAVNHISIH--PSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        70 ~~~~~d~~i~~~d~~~-------~----~-------~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      +.+..||.|.+|.+..       .    .       ....+ ....+.+.++++++  ...++|++++....|.||-...
T Consensus       118 l~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f-~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l  196 (717)
T PF08728_consen  118 LLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFF-HLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFAL  196 (717)
T ss_pred             EEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCe-EeecCCceeEEEEEecCcceEEEEecCCceEEEEEEec
Confidence            8999999999997521       1    0       00112 12233348999999  7888899988888888886543

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PRK10115 protease 2; Provisional

Probab=90.62  E-value=5.9  Score=29.85  Aligned_cols=106  Identities=6%  Similarity=0.032  Sum_probs=59.1

Q ss_pred             EEecCCcEEEEeC-----CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC-C-----CcEEEEEeCCc-
Q psy11518         19 SVAATSKLAASSG-----ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD-D-----GSIAIFRVGSW-   86 (139)
Q Consensus        19 ~~~~~~~~l~~~~-----~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~~~d~~~~-   86 (139)
                      .+++++++|+.+.     +...|.+.|+.+++.+...-... . ..++|.++++.++.... +     ..|..+++.++ 
T Consensus       133 ~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~-~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~  210 (686)
T PRK10115        133 AITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV-E-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPA  210 (686)
T ss_pred             EECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc-c-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCCh
Confidence            3445888777543     33468888988876432221111 1 45899998886654432 2     35777788776 


Q ss_pred             -eEEEEEEeCCCCcceeEEEEccCCcEEEEEc---CCCeEEEEEc
Q psy11518         87 -QLEKLFKKAHKGTAVNHISIHPSGKLALSVG---KDKTLRTWNL  127 (139)
Q Consensus        87 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~  127 (139)
                       +....+....... ......+.++++++..+   .++.+.+++.
T Consensus       211 ~~d~lv~~e~~~~~-~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        211 SQDELVYEEKDDTF-YVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             hHCeEEEeeCCCCE-EEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence             3333442222211 11333344777665443   3567888884

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=90.62  E-value=3.8  Score=27.68  Aligned_cols=69  Identities=10%  Similarity=0.072  Sum_probs=49.9

Q ss_pred             CCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcC--------------------CCeEEE
Q psy11518         65 EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGK--------------------DKTLRT  124 (139)
Q Consensus        65 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------------------d~~i~i  124 (139)
                      ++++.+.-+..|.+.-+|.++++.......++.   +..++|.  |.+++++-+                    ..-|.+
T Consensus       212 dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~---~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~v  286 (335)
T TIGR03032       212 QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGF---TRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAV  286 (335)
T ss_pred             CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCC---Cccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEE
Confidence            577778888888899999887776665534432   6788887  777766521                    133788


Q ss_pred             EEcCCCceeEEEec
Q psy11518        125 WNLVKGRSAYITNL  138 (139)
Q Consensus       125 ~d~~~~~~~~~~~~  138 (139)
                      .|+++|..+..+.+
T Consensus       287 idl~tG~vv~~l~f  300 (335)
T TIGR03032       287 IDLNSGDVVHWLRF  300 (335)
T ss_pred             EECCCCCEEEEEEe
Confidence            89999998887765

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=90.51  E-value=3.9  Score=29.65  Aligned_cols=61  Identities=21%  Similarity=0.279  Sum_probs=41.8

Q ss_pred             CCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         65 EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        65 ~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      ..-++|.++..|.|++||--.-.....  .+.-+..|-.+..+.+|+++++.+. ..+.+-|++
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKta--lP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTA--LPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhc--CcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            456899999999999999533222222  2344455888999999998877664 355566654

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.49  E-value=6.3  Score=29.92  Aligned_cols=72  Identities=22%  Similarity=0.317  Sum_probs=45.9

Q ss_pred             eEEEEe--cCCcEEEEeCCCCeEEEEEccC---------Ccee---eEE--------EecCCCeEEEEECCC---CCEEE
Q psy11518         16 SVRSVA--ATSKLAASSGADETVVLYDMVK---------RKQS---GAL--------MQHEGTITCLKFTPE---GSHLI   70 (139)
Q Consensus        16 ~v~~~~--~~~~~l~~~~~~~~v~i~~~~~---------~~~~---~~~--------~~~~~~v~~~~~~~~---~~~l~   70 (139)
                      .|..+.  ++|.+++..|..|...+.=+..         ++..   .++        ......|..+.|+|.   +..|+
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~  165 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLV  165 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEE
Confidence            344444  4899998888766444433321         1111   111        123457889999995   57888


Q ss_pred             EecCCCcEEEEEeCCce
Q psy11518         71 SCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        71 ~~~~d~~i~~~d~~~~~   87 (139)
                      .-..|+.+++||+....
T Consensus       166 vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  166 VLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEecCCEEEEEecCCCC
Confidence            88899999999996543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=90.37  E-value=2.4  Score=27.48  Aligned_cols=88  Identities=19%  Similarity=0.257  Sum_probs=48.0

Q ss_pred             EEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC-C--CcEEEEEeCC----ceEEE---EEEeCCCCcceeEEE
Q psy11518         36 VVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD-D--GSIAIFRVGS----WQLEK---LFKKAHKGTAVNHIS  105 (139)
Q Consensus        36 v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~~~d~~~----~~~~~---~~~~~~~~~~v~~~~  105 (139)
                      -.+||+.+++..-.--.....+..-++.++|+++.+|+. +  ..+++++...    .....   .+  ..... -....
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m--~~~RW-YpT~~  124 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDM--QSGRW-YPTAT  124 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccc--cCCCc-cccce
Confidence            447888877543221122333344467889999988865 3  2477777543    11111   11  11111 23445


Q ss_pred             EccCCcEEEEEcCCCe-EEEEE
Q psy11518        106 IHPSGKLALSVGKDKT-LRTWN  126 (139)
Q Consensus       106 ~~~~~~~l~~~~~d~~-i~i~d  126 (139)
                      --|||+.++.|+.... ..+|.
T Consensus       125 ~L~DG~vlIvGG~~~~t~E~~P  146 (243)
T PF07250_consen  125 TLPDGRVLIVGGSNNPTYEFWP  146 (243)
T ss_pred             ECCCCCEEEEeCcCCCcccccC
Confidence            5679999999887632 34444

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PHA02790 Kelch-like protein; Provisional

Probab=90.28  E-value=5.2  Score=28.65  Aligned_cols=107  Identities=5%  Similarity=-0.096  Sum_probs=55.0

Q ss_pred             CCcEEEEeCCCC-----eEEEEEccCCce--eeEEEecCCCeEEEEECCCCCEEEEecCCC--cEEEEEeCCceEEEEEE
Q psy11518         23 TSKLAASSGADE-----TVVLYDMVKRKQ--SGALMQHEGTITCLKFTPEGSHLISCSDDG--SIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        23 ~~~~l~~~~~~~-----~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~   93 (139)
                      ++.++++|+.++     .+..||+.+.+-  +..+.........+..  ++...+.|+.++  .+..||..++.....-.
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            566667777543     566788766531  1111111111222222  666777777543  47788876554332211


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCC---CeEEEEEcCCCcee
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKD---KTLRTWNLVKGRSA  133 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~  133 (139)
                      ...........  .-+++..+.||.+   ..+..||.++.+..
T Consensus       349 l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~  389 (480)
T PHA02790        349 LLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQ  389 (480)
T ss_pred             CCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence            11111101112  2367888888754   34778888776544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.05  E-value=3.4  Score=26.31  Aligned_cols=104  Identities=15%  Similarity=0.183  Sum_probs=58.0

Q ss_pred             CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcc---eeEEEEcc
Q psy11518         32 ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA---VNHISIHP  108 (139)
Q Consensus        32 ~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~---v~~~~~~~  108 (139)
                      .++.-..+|..+-+.+..+...... ..+  ..++..|..++....+..-|..+............+.|   +..+.|- 
T Consensus       109 ~egvaf~~d~~t~~~lg~~~y~GeG-WgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-  184 (262)
T COG3823         109 KEGVAFKYDADTLEELGRFSYEGEG-WGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-  184 (262)
T ss_pred             ccceeEEEChHHhhhhcccccCCcc-eee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-
Confidence            4555556666666655554432211 333  33556677777777777777665444443333333333   3344443 


Q ss_pred             CCcEEEEEcCCCeEEEEEcCCCceeEEEecC
Q psy11518        109 SGKLALSVGKDKTLRTWNLVKGRSAYITNLS  139 (139)
Q Consensus       109 ~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  139 (139)
                      +|..++-.=.+..|...+..+|+.+..+.+|
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS  215 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLS  215 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEcc
Confidence            5666665555666777777788777766653

>PRK10115 protease 2; Provisional

Probab=90.01  E-value=3.1  Score=31.24  Aligned_cols=71  Identities=8%  Similarity=-0.029  Sum_probs=45.2

Q ss_pred             CeEEEEECCCCCEEEEe-cCCC----cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC------CeEEE
Q psy11518         56 TITCLKFTPEGSHLISC-SDDG----SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD------KTLRT  124 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~-~~d~----~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i  124 (139)
                      .+..+.++|++++++.+ +.+|    .|.+.|+.++..+...   .... -..++|.+|++.++....+      ..|..
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~---i~~~-~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPEL---LDNV-EPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcc---ccCc-ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            35677899999988744 3333    4888888877533222   1111 1458999998866555332      36777


Q ss_pred             EEcCCC
Q psy11518        125 WNLVKG  130 (139)
Q Consensus       125 ~d~~~~  130 (139)
                      +++.++
T Consensus       204 h~lgt~  209 (686)
T PRK10115        204 HTIGTP  209 (686)
T ss_pred             EECCCC
Confidence            888877

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=89.71  E-value=1  Score=19.86  Aligned_cols=21  Identities=14%  Similarity=0.088  Sum_probs=16.1

Q ss_pred             CCcEEEEEcCCCeEEEEEcCC
Q psy11518        109 SGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus       109 ~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      .+..++.++.||.++.+|.++
T Consensus        20 ~~g~vyv~~~dg~l~ald~~t   40 (40)
T PF13570_consen   20 AGGRVYVGTGDGNLYALDAAT   40 (40)
T ss_dssp             CTSEEEEE-TTSEEEEEETT-
T ss_pred             ECCEEEEEcCCCEEEEEeCCC
Confidence            356788899999999999864

>KOG1897|consensus

Probab=89.43  E-value=8.8  Score=30.08  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             eeeEEEEe-cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC--CceEEE
Q psy11518         14 TASVRSVA-ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG--SWQLEK   90 (139)
Q Consensus        14 ~~~v~~~~-~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~   90 (139)
                      .+.+.++. |+|+++|.-  +.+|++|+..+.+.+..-..+...+..+...-.+..++.|+--+.+.+...+  .+....
T Consensus       829 ~Gav~aL~~fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~e  906 (1096)
T KOG1897|consen  829 KGAVYALVEFNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEE  906 (1096)
T ss_pred             ccceeehhhhCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEE
Confidence            34555555 488888744  5789999998887776666677788888888889999999887777665443  333444


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      ....-+... .+.+.+- ++..++-+..+|.+.+-..
T Consensus       907 vArD~~p~W-mtaveil-~~d~ylgae~~gNlf~v~~  941 (1096)
T KOG1897|consen  907 VARDYNPNW-MTAVEIL-DDDTYLGAENSGNLFTVRK  941 (1096)
T ss_pred             eehhhCccc-eeeEEEe-cCceEEeecccccEEEEEe
Confidence            332222222 4555544 3444444555566555433

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.41  E-value=5.2  Score=27.42  Aligned_cols=110  Identities=10%  Similarity=0.029  Sum_probs=65.6

Q ss_pred             cEEEEeCCCCeEEEEEccCCceeeEEEecCC-CeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCC-CCccee
Q psy11518         25 KLAASSGADETVVLYDMVKRKQSGALMQHEG-TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH-KGTAVN  102 (139)
Q Consensus        25 ~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~v~  102 (139)
                      ..++.++.++.+..+|..+++.+........ .+..-....++ .+..++.++.+...|..++...+...... ....+.
T Consensus       112 G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~  190 (370)
T COG1520         112 GKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIY  190 (370)
T ss_pred             CeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccc
Confidence            3477788888899999888988887775541 11111111133 33334478899999999999888864432 111111


Q ss_pred             EEEEccCCcEEEEEcC--CCeEEEEEcCCCceeEEE
Q psy11518        103 HISIHPSGKLALSVGK--DKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~  136 (139)
                      .--. .....++.+..  ++.+.-.|.++|+.+...
T Consensus       191 ~~~~-~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~  225 (370)
T COG1520         191 GSPA-IASGTVYVGSDGYDGILYALNAEDGTLKWSQ  225 (370)
T ss_pred             cCce-eecceEEEecCCCcceEEEEEccCCcEeeee
Confidence            1111 22334444444  667888888888877664

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.39  E-value=1.1  Score=19.61  Aligned_cols=27  Identities=11%  Similarity=-0.079  Sum_probs=22.5

Q ss_pred             EEEEeCCCCeEEEEEccCCceeeEEEe
Q psy11518         26 LAASSGADETVVLYDMVKRKQSGALMQ   52 (139)
Q Consensus        26 ~l~~~~~~~~v~i~~~~~~~~~~~~~~   52 (139)
                      .++.++.+|.|.-.|.++|+.+..++.
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~   28 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQT   28 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence            456669999999999999999887763

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=89.22  E-value=5.7  Score=27.63  Aligned_cols=90  Identities=8%  Similarity=0.018  Sum_probs=42.7

Q ss_pred             CCcEEE-EeCCCC--eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCc
Q psy11518         23 TSKLAA-SSGADE--TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT   99 (139)
Q Consensus        23 ~~~~l~-~~~~~~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~   99 (139)
                      +|+.|+ .+..++  .+.+.|+.+++..+.-.+-........++|+.+.++-......|.-.|+.+.+....+..+.. .
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~-~  124 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDD-W  124 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TT-E
T ss_pred             CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcc-c
Confidence            675554 444455  555667777765443332212222445678777775544455788889998876666633322 2


Q ss_pred             ceeEEEEc--cCCcEEE
Q psy11518        100 AVNHISIH--PSGKLAL  114 (139)
Q Consensus       100 ~v~~~~~~--~~~~~l~  114 (139)
                       +-...|.  .++..++
T Consensus       125 -~g~gt~v~n~d~t~~~  140 (386)
T PF14583_consen  125 -KGYGTWVANSDCTKLV  140 (386)
T ss_dssp             -EEEEEEEE-TTSSEEE
T ss_pred             -ccccceeeCCCccEEE
Confidence             3334443  3555544

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.04  E-value=6.7  Score=28.15  Aligned_cols=109  Identities=17%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCC---CeEEEEECCCCCEEEEecC-------------CCcEEEEEeCCc
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEG---TITCLKFTPEGSHLISCSD-------------DGSIAIFRVGSW   86 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~-------------d~~i~~~d~~~~   86 (139)
                      +|.+++...  ..+..+|. .|+.+.....-..   .-..+...|+|++|+.+..             ...|..+| .++
T Consensus       158 nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG  233 (477)
T PF05935_consen  158 NGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTG  233 (477)
T ss_dssp             TS-EEEEEB--TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS
T ss_pred             CCCEEEecC--CceEEEcC-CCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCC
Confidence            565555444  66777775 3554444332111   1245677889998887661             12366666 777


Q ss_pred             eEEEEEEeCCC--------------------------CcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         87 QLEKLFKKAHK--------------------------GTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        87 ~~~~~~~~~~~--------------------------~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +..+.+.....                          -+ +.++.+.+ ++.+++++-.-..|...|.++++....+
T Consensus       234 ~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H-~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil  309 (477)
T PF05935_consen  234 EVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLH-INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL  309 (477)
T ss_dssp             -EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS---EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred             CEEEEEehHHhCCcccccccccccccccccCCCCCCccc-cCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
Confidence            76665421110                          11 78889988 7777788877778999998888887664

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=88.87  E-value=2.4  Score=22.83  Aligned_cols=49  Identities=10%  Similarity=0.135  Sum_probs=30.5

Q ss_pred             EecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEE-cCCCeE
Q psy11518         71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSV-GKDKTL  122 (139)
Q Consensus        71 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i  122 (139)
                      .+..+|.+.-||..+++..-.+..-..   .+.++.++|+.+++.+ ....+|
T Consensus        32 e~~~~GRll~ydp~t~~~~vl~~~L~f---pNGVals~d~~~vlv~Et~~~Ri   81 (89)
T PF03088_consen   32 EGRPTGRLLRYDPSTKETTVLLDGLYF---PNGVALSPDESFVLVAETGRYRI   81 (89)
T ss_dssp             HT---EEEEEEETTTTEEEEEEEEESS---EEEEEE-TTSSEEEEEEGGGTEE
T ss_pred             cCCCCcCEEEEECCCCeEEEehhCCCc---cCeEEEcCCCCEEEEEeccCceE
Confidence            345567888999988876555533332   6889999999976655 333443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG2280|consensus

Probab=88.46  E-value=8  Score=29.36  Aligned_cols=50  Identities=12%  Similarity=0.415  Sum_probs=35.5

Q ss_pred             CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         34 ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        34 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ..|+||+. +|+.+....-....+..+.|+.+. .|+....+|.+.+|++..
T Consensus        64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g  113 (829)
T KOG2280|consen   64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG  113 (829)
T ss_pred             eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence            34777775 566665544444577899999765 456677899999999863

>KOG2109|consensus

Probab=88.36  E-value=0.85  Score=33.59  Aligned_cols=86  Identities=16%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCc-EEEEEeCCceEE-----EEEEeCC----CCcceeEE
Q psy11518         35 TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGS-IAIFRVGSWQLE-----KLFKKAH----KGTAVNHI  104 (139)
Q Consensus        35 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~~~~~-----~~~~~~~----~~~~v~~~  104 (139)
                      .+.+-|+.+...+..|+.|..++..++|.+.+..+++++-.|. |.++.+-.....     ..+ ..+    ....+..+
T Consensus       296 ~vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~-~~s~ra~t~aviqdi  374 (788)
T KOG2109|consen  296 LVIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSL-VVSPRANTAAVIQDI  374 (788)
T ss_pred             eEEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEecccccccccccccc-ccchhcchHHHHHHH
Confidence            3556677777778889999999999999999999998877663 555554221111     111 111    11125667


Q ss_pred             EEccCCcEEEEEcCCCe
Q psy11518        105 SIHPSGKLALSVGKDKT  121 (139)
Q Consensus       105 ~~~~~~~~l~~~~~d~~  121 (139)
                      +|+....++..++.+|.
T Consensus       375 cfs~~s~~r~~gsc~Ge  391 (788)
T KOG2109|consen  375 CFSEVSTIRTAGSCEGE  391 (788)
T ss_pred             hhhhhcceEeecccCCC
Confidence            88888888888876654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=87.96  E-value=7.5  Score=27.45  Aligned_cols=107  Identities=8%  Similarity=-0.007  Sum_probs=0.0

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCc----eeeEEEecCCCeEEEEECC----CCCEEEEecCCCcEEEEEe-----------
Q psy11518         23 TSKLAASSGADETVVLYDMVKRK----QSGALMQHEGTITCLKFTP----EGSHLISCSDDGSIAIFRV-----------   83 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~----~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i~~~d~-----------   83 (139)
                      +...+++|+..|.++||++....    .+..-..-..+|..+..-+    .....++.-.-..+.+|.+           
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~  115 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN  115 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc


Q ss_pred             -CCceEEEEEEeCCCCcceeEEEEccCC--cEEEEEcCCCeEEEEEcCC
Q psy11518         84 -GSWQLEKLFKKAHKGTAVNHISIHPSG--KLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        84 -~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~  129 (139)
                       -.-.........+.........|....  .++.+-+.||.+.+|+-+.
T Consensus       116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~  164 (418)
T PF14727_consen  116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES  164 (418)
T ss_pred             EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc

>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length

Probab=87.95  E-value=1.2  Score=18.18  Aligned_cols=25  Identities=12%  Similarity=0.259  Sum_probs=19.9

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEE
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYD   40 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~   40 (139)
                      .+.+++....+++++...+.+++|.
T Consensus         3 ~i~aia~g~~~vavaTS~~~lRifs   27 (27)
T PF12341_consen    3 EIEAIAAGDSWVAVATSAGYLRIFS   27 (27)
T ss_pred             eEEEEEccCCEEEEEeCCCeEEecC
Confidence            4567777778999999999999873

The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.

>KOG1897|consensus

Probab=87.17  E-value=13  Score=29.27  Aligned_cols=109  Identities=12%  Similarity=0.037  Sum_probs=65.0

Q ss_pred             ecCCcEEEEeCCCCeEEEEEccCCceeeEE-EecCCCeEEEEECCC--C----CEEEEecCCCcEEEE-EeCCceEEEEE
Q psy11518         21 AATSKLAASSGADETVVLYDMVKRKQSGAL-MQHEGTITCLKFTPE--G----SHLISCSDDGSIAIF-RVGSWQLEKLF   92 (139)
Q Consensus        21 ~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~--~----~~l~~~~~d~~i~~~-d~~~~~~~~~~   92 (139)
                      ..+...++.++.++.+-..++......... ......|.|+.++|-  +    +.++.|.++..+.+. -+.....+...
T Consensus       496 ~~n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~  575 (1096)
T KOG1897|consen  496 SANASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHE  575 (1096)
T ss_pred             eecceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeee
Confidence            335666777777777766666655422211 123567899999973  2    267888877665433 33444433333


Q ss_pred             EeCCCCc--ceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         93 KKAHKGT--AVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        93 ~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ......-  .|.-.++-.|..+|.++..||.+.-|.+..
T Consensus       576 ~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~  614 (1096)
T KOG1897|consen  576 QLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI  614 (1096)
T ss_pred             ccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence            2222221  244455666788999999999987775543

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=86.72  E-value=6.2  Score=25.19  Aligned_cols=106  Identities=11%  Similarity=0.028  Sum_probs=58.2

Q ss_pred             CCcEEEEeCC--CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCE-EEEecCCCcEEEEEeCCceEEEEEEeCCCCc
Q psy11518         23 TSKLAASSGA--DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH-LISCSDDGSIAIFRVGSWQLEKLFKKAHKGT   99 (139)
Q Consensus        23 ~~~~l~~~~~--~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~   99 (139)
                      ++.++.+.+.  ...|++||+.+++.+...+-....+..-....-+.+ .+-.-.+|....+|.++.+.+..+.....+ 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc-
Confidence            5666666553  457999999988776554322111111111111222 233445777888888887777766444443 


Q ss_pred             ceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518        100 AVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                        +.++  .|++-++.+.....++.-|.++-...
T Consensus       134 --WgLt--~d~~~LimsdGsatL~frdP~tfa~~  163 (262)
T COG3823         134 --WGLT--SDDKNLIMSDGSATLQFRDPKTFAEL  163 (262)
T ss_pred             --eeee--cCCcceEeeCCceEEEecCHHHhhhc
Confidence              3343  24555665555556666666554443

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=86.07  E-value=7.9  Score=25.75  Aligned_cols=96  Identities=15%  Similarity=0.158  Sum_probs=53.4

Q ss_pred             CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec------CCCcEEEEEeCCceEEEEEEe--CCCCcceeE
Q psy11518         32 ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS------DDGSIAIFRVGSWQLEKLFKK--AHKGTAVNH  103 (139)
Q Consensus        32 ~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~~~d~~~~~~~~~~~~--~~~~~~v~~  103 (139)
                      ....|++||..+.+=...-.+-.+.|+.+.|..+.+.++.|.      ....+..||..+......-..  ..-..++..
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a   93 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTA   93 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEE
Confidence            356799999766532221122346799999986667777664      344688899877654332210  112234776


Q ss_pred             EEEcc-CCc-EEEEEc---CCCeEEEEEc
Q psy11518        104 ISIHP-SGK-LALSVG---KDKTLRTWNL  127 (139)
Q Consensus       104 ~~~~~-~~~-~l~~~~---~d~~i~i~d~  127 (139)
                      +.+.. ++. +.+.|.   .+..|..||=
T Consensus        94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dG  122 (281)
T PF12768_consen   94 LTFISNDGSNFWVAGRSANGSTFLMKYDG  122 (281)
T ss_pred             EEeeccCCceEEEeceecCCCceEEEEcC
Confidence            66643 333 333333   2344666653

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=85.83  E-value=14  Score=28.37  Aligned_cols=104  Identities=10%  Similarity=0.139  Sum_probs=63.9

Q ss_pred             CCcEEEEeCCCCeEEEEEccCC----ceeeEEE-ecC----------CCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         23 TSKLAASSGADETVVLYDMVKR----KQSGALM-QHE----------GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~----~~~~~~~-~~~----------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      +...||+....|...||++...    .....+. .+.          +.-..+.|.++.+.|+.++.. .+.++|+.+..
T Consensus       157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~  235 (765)
T PF10214_consen  157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNW  235 (765)
T ss_pred             ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCC
Confidence            6779999999999999999221    1111111 111          122367888888888888765 58899998776


Q ss_pred             EEEEEEeCCCCcceeEEEEccC--CcEEEEEcCCCeEEEEEcCC
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ....+........|.++.-+|.  ...++..+  ..|...++..
T Consensus       236 ~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~  277 (765)
T PF10214_consen  236 QTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS  277 (765)
T ss_pred             ccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence            5442323444444888888776  23333322  4566666665

These proteins are found in fungi.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=85.76  E-value=11  Score=27.13  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=65.3

Q ss_pred             CCcEEEEeCCCCeEEEE-EccCC-ce----eeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCC
Q psy11518         23 TSKLAASSGADETVVLY-DMVKR-KQ----SGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH   96 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~-~~~~~-~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~   96 (139)
                      .|..+.++..||.|.-| |+..+ .+    +..++-...++..+.-..+.+.++.-..+|++..+.....+..-.- ...
T Consensus       279 Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~-~~~  357 (733)
T COG4590         279 GGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE-RAY  357 (733)
T ss_pred             CceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh-hhh
Confidence            45568888899988866 44332 22    1222222334444333334566788888888888775544332221 111


Q ss_pred             CCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         97 KGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        97 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      . . +..++++|++.++++-. .|.++++.+++..+..
T Consensus       358 ~-~-~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pei  392 (733)
T COG4590         358 Q-A-PQLVAMSPNQAYLLSED-QGKIRLAQLENRNPEI  392 (733)
T ss_pred             c-C-cceeeeCcccchheeec-CCceEEEEecCCCCCc
Confidence            2 2 66789999999887654 4679999988776543

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=85.60  E-value=11  Score=27.06  Aligned_cols=111  Identities=13%  Similarity=0.112  Sum_probs=53.6

Q ss_pred             CCcEEEEe---CCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCC-
Q psy11518         23 TSKLAASS---GADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG-   98 (139)
Q Consensus        23 ~~~~l~~~---~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-   98 (139)
                      ++-+++..   .......++|. .|..+..+.........+...++|.+++...  ..+..+|.. |+....+..+... 
T Consensus       114 ~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~  189 (477)
T PF05935_consen  114 DGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY  189 (477)
T ss_dssp             T-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred             CcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence            33345555   23455556663 4555554443222211156678888887555  678888875 5555555333321 


Q ss_pred             cceeEEEEccCCcEEEEEcC-------------CCeEEEEEcCCCceeEEEec
Q psy11518         99 TAVNHISIHPSGKLALSVGK-------------DKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~-------------d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .--..+..-|+|++|+.+..             .-.|..+| .+|+.+..+.+
T Consensus       190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~  241 (477)
T PF05935_consen  190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDF  241 (477)
T ss_dssp             -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEG
T ss_pred             ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEeh
Confidence            00234677899998887771             23477778 88888877654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.54  E-value=8.8  Score=25.82  Aligned_cols=71  Identities=11%  Similarity=0.214  Sum_probs=39.5

Q ss_pred             cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         53 HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        53 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      -.+.+..+.-++++++++++..-....-||-........- .. ...+|..|.|.|++.+.+.+ ..|.|+.=+
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~-r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~  213 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHN-RN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSD  213 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEc-cC-ccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence            3466788888999999998877666678875432222222 22 23349999999998866554 566666655

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=85.50  E-value=9.1  Score=25.91  Aligned_cols=72  Identities=17%  Similarity=0.229  Sum_probs=48.4

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEeC------Cc-eEEEEEEeC---CCCcceeEEEEccCCcE------------EE
Q psy11518         57 ITCLKFTPEGSHLISCSDDGSIAIFRVG------SW-QLEKLFKKA---HKGTAVNHISIHPSGKL------------AL  114 (139)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d~~i~~~d~~------~~-~~~~~~~~~---~~~~~v~~~~~~~~~~~------------l~  114 (139)
                      -+.++++|.+.+.++....+...+||..      .. .+.-.+...   .....++.+.|+....+            ++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            3688999999999999889999999986      12 222222110   11223777888754433            56


Q ss_pred             EEcCCCeEEEEEcC
Q psy11518        115 SVGKDKTLRTWNLV  128 (139)
Q Consensus       115 ~~~~d~~i~i~d~~  128 (139)
                      .+++||+|.-|+..
T Consensus       105 f~tEdGTisaW~p~  118 (336)
T TIGR03118       105 FVTEDGTLSGWAPA  118 (336)
T ss_pred             EEeCCceEEeecCc
Confidence            67889999999853

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=84.87  E-value=6.1  Score=26.27  Aligned_cols=54  Identities=9%  Similarity=0.148  Sum_probs=37.1

Q ss_pred             cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEc------CCCeEEEEEcCCCce
Q psy11518         77 SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG------KDKTLRTWNLVKGRS  132 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~d~~i~i~d~~~~~~  132 (139)
                      -|++||..+.+....- .. -.+.|..+.|..+.+.++.|.      ....+..||+.+...
T Consensus        17 ~lC~yd~~~~qW~~~g-~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w   76 (281)
T PF12768_consen   17 GLCLYDTDNSQWSSPG-NG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW   76 (281)
T ss_pred             EEEEEECCCCEeecCC-CC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence            4899998877665444 23 333499999986666776664      356788898876643

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.67  E-value=9.7  Score=25.57  Aligned_cols=117  Identities=8%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEec-CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQH-EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ....+.++.|  +.+.|.+......-.++=...|+.+.+..-. -+....+.|..++++.++--+++.+.++.+......
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            3444666766  5556655555555555555677777665421 122357778878888888888888888887654211


Q ss_pred             E-----EEE---eCC-CCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         90 K-----LFK---KAH-KGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        90 ~-----~~~---~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      .     .+.   ..+ +.+ ...++|.|..+.+..+=+..-+.||....+
T Consensus       164 ~~~~~~~i~L~~~~k~N~G-fEGlA~d~~~~~l~~aKEr~P~~I~~~~~~  212 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKG-FEGLAWDPVDHRLFVAKERNPIGIFEVTQS  212 (316)
T ss_pred             EeccceEEeccccCCCCcC-ceeeecCCCCceEEEEEccCCcEEEEEecC
Confidence            1     111   111 233 788999999998888888777888766533

>KOG3616|consensus

Probab=84.66  E-value=3.5  Score=31.43  Aligned_cols=67  Identities=18%  Similarity=0.394  Sum_probs=41.5

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEE
Q psy11518         54 EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW  125 (139)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~  125 (139)
                      ...+++++-+|.++.++.+..||.|.+|+.-.........   ...|...+.|...|  ++++..|+++.-|
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~---~~~p~~nlv~tnhg--l~~~tsdrr~la~   80 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE---EAKPKENLVFTNHG--LVTATSDRRALAW   80 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh---hcCCccceeeeccc--eEEEeccchhhee
Confidence            3456788888999999999999999999975443322221   11113345554333  4555555555555

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=84.12  E-value=11  Score=25.64  Aligned_cols=69  Identities=16%  Similarity=0.117  Sum_probs=41.9

Q ss_pred             CCeEEEEECC-------CCCEEEEecCCCcEEEEEeCCceEEE-EEE-eCCCCcceeEEEEccCCcEEEEEcCCCeEE
Q psy11518         55 GTITCLKFTP-------EGSHLISCSDDGSIAIFRVGSWQLEK-LFK-KAHKGTAVNHISIHPSGKLALSVGKDKTLR  123 (139)
Q Consensus        55 ~~v~~~~~~~-------~~~~l~~~~~d~~i~~~d~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  123 (139)
                      ..+..+.|-.       .+.++++.-..+.|....+....... ... ......++..+++.|||.++++...+|.|.
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            4456666642       34566666667778888876443322 211 223343589999999999988888888763

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=83.63  E-value=11  Score=25.31  Aligned_cols=69  Identities=13%  Similarity=0.163  Sum_probs=0.0

Q ss_pred             eEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeE----EEEccCCcEEEEEcCCCeEEEEE
Q psy11518         57 ITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNH----ISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~----~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      ++++...++|.+|++.-.-..|.+.|.++++.++.+.-+.... ..-    .+|-.+-+++-.+..++.|.+||
T Consensus       146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~d-f~~~~~~f~~QHdar~~~~~~~~~~IslFD  218 (299)
T PF14269_consen  146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSD-FTLPATNFSWQHDARFLNESNDDGTISLFD  218 (299)
T ss_pred             eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCc-ccccCCcEeeccCCEEeccCCCCCEEEEEc

>KOG2103|consensus

Probab=83.46  E-value=12  Score=28.76  Aligned_cols=75  Identities=15%  Similarity=0.255  Sum_probs=50.0

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcCCCceeE
Q psy11518         56 TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~  134 (139)
                      .+..+.+.+...+++.....|.+.-.++++|+..+......+.. ...+-+.      -+.+ +...++.||..+|....
T Consensus        37 k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~-~~~~~~~------~~iS~dg~~lr~wn~~~g~l~~  109 (910)
T KOG2103|consen   37 KVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTS-GLGVPLT------NTISVDGRYLRSWNTNNGILDW  109 (910)
T ss_pred             eEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCc-ccCccee------EEEccCCcEEEeecCCCceeee
Confidence            46777788888889999999999999999999887764433332 1122111      1233 33458899998886665


Q ss_pred             EEe
Q psy11518        135 ITN  137 (139)
Q Consensus       135 ~~~  137 (139)
                      .+.
T Consensus       110 ~i~  112 (910)
T KOG2103|consen  110 EIE  112 (910)
T ss_pred             ecc
Confidence            544

>KOG2247|consensus

Probab=83.44  E-value=0.064  Score=37.75  Aligned_cols=107  Identities=15%  Similarity=0.142  Sum_probs=68.1

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                      .+.-++.++.+..+..||- .++...... -......++|+.++..++ .+-..+.+.+||+.+.... .+....... -
T Consensus        45 e~~nlavaca~tiv~~YD~-agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~gg~~s-~  120 (615)
T KOG2247|consen   45 EGHNLAVACANTIVIYYDK-AGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESGGTSS-K  120 (615)
T ss_pred             CCCceehhhhhhHHHhhhh-hcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhccCcch-H
Confidence            5555888888888888884 333333322 223445677877776654 5566788999998653322 221122211 2


Q ss_pred             eEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518        102 NHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      .-+.|++.+..++.+...+.+.|++..+.+.+
T Consensus       121 sll~wsKg~~el~ig~~~gn~viynhgtsR~i  152 (615)
T KOG2247|consen  121 SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI  152 (615)
T ss_pred             HHHhhccCCccccccccccceEEEeccchhhh
Confidence            22778888888888888899999987765443

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=83.34  E-value=12  Score=25.71  Aligned_cols=62  Identities=13%  Similarity=0.239  Sum_probs=36.4

Q ss_pred             CCeEEEEECCCCCEEEEecCC-------------------CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEE
Q psy11518         55 GTITCLKFTPEGSHLISCSDD-------------------GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALS  115 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d-------------------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  115 (139)
                      .....+.|.|+|.+.++-+..                   +.+.-++...+.. ..+... ... ...++|+++|+++++
T Consensus       124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G-~rn-p~Gl~~d~~G~l~~t  200 (367)
T TIGR02604       124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHG-FQN-PYGHSVDSWGDVFFC  200 (367)
T ss_pred             ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecC-cCC-CccceECCCCCEEEE
Confidence            346789999999876544411                   2344444443332 333222 222 678999999998876


Q ss_pred             EcCC
Q psy11518        116 VGKD  119 (139)
Q Consensus       116 ~~~d  119 (139)
                      -..+
T Consensus       201 dn~~  204 (367)
T TIGR02604       201 DNDD  204 (367)
T ss_pred             ccCC
Confidence            5543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=82.78  E-value=12  Score=25.27  Aligned_cols=123  Identities=11%  Similarity=0.018  Sum_probs=0.0

Q ss_pred             eeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         14 TASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        14 ~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      +..+.++.+.++++..+..+.-+++.|+.+.........-.-.=..-.|.-.|+++..+..+.-+.+.|+.+........
T Consensus        86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lag  165 (370)
T COG5276          86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAG  165 (370)
T ss_pred             hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeee


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ...... -..-...-.|++-..+..|+-+.+-|+.+.....-+.
T Consensus       166 rya~~~-~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~  208 (370)
T COG5276         166 RYALPG-GDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIG  208 (370)
T ss_pred             eeccCC-CCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEE

>KOG2377|consensus

Probab=82.25  E-value=16  Score=26.33  Aligned_cols=115  Identities=17%  Similarity=0.246  Sum_probs=68.0

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCcee----eEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQS----GALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ..++|.++.|  |.+.+|+--.+.+|.+++....+..    .+.+.....|....|+.. +-+|.-...| +.+|-+...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            3457888887  8999999999999999998544332    222334455788888766 3344444344 666665433


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEc--CCCeEEEEEcCCC
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVG--KDKTLRTWNLVKG  130 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~  130 (139)
                      ...-.+...+..+ |.-..|.++.+.++.++  ..+.+.-+-++++
T Consensus       143 krslRlVks~~~n-vnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  143 KRSLRLVKSHNLN-VNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             hhhhhhhhhcccC-ccEEEEccccceEeeeccccccccccEEEeec
Confidence            2222221233444 77788888887655444  3344444444443

>KOG2727|consensus

Probab=81.88  E-value=2.4  Score=32.78  Aligned_cols=80  Identities=15%  Similarity=0.342  Sum_probs=51.8

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEE------Ec-cC-Cc----EEEEEcCCCeEEEE
Q psy11518         58 TCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS------IH-PS-GK----LALSVGKDKTLRTW  125 (139)
Q Consensus        58 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~------~~-~~-~~----~l~~~~~d~~i~i~  125 (139)
                      ..++.+|+|++.|..+.=|.|.+.|+.....+..+ .+.+..++.-+.      ++ +. .+    +.+-+...|.+.||
T Consensus       325 e~lslSP~gtlAAVTD~lgRVlLlDta~~ivvr~w-KGYRDAsc~fv~vkek~~~s~~~~sRvAlFLvIyAPRrgiLEVW  403 (1244)
T KOG2727|consen  325 EKLSLSPSGTLAAVTDSLGRVLLLDTAALIVVRLW-KGYRDASCVFVEVKEKKGKSEPVKSRVALFLVIYAPRRGILEVW  403 (1244)
T ss_pred             ceeeeCCCccEEEEecccCcEEEEehhhhhHHHHh-cccccceeEEEEcccccCCCccCcCceeEEEEEecccccHHHHH
Confidence            46788999999998888889999998776555444 222322121111      01 11 11    12345567889999


Q ss_pred             EcCCCceeEEEec
Q psy11518        126 NLVKGRSAYITNL  138 (139)
Q Consensus       126 d~~~~~~~~~~~~  138 (139)
                      .+++|-.+..+++
T Consensus       404 ~~q~gpRV~AfnV  416 (1244)
T KOG2727|consen  404 QMQTGPRVLAFNV  416 (1244)
T ss_pred             HhccCCeEEEEec
Confidence            9999988887765

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=81.75  E-value=11  Score=27.54  Aligned_cols=23  Identities=13%  Similarity=0.290  Sum_probs=17.2

Q ss_pred             eCCCCcceeEEEEccCCcEEEEE
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSV  116 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~  116 (139)
                      ....+..++.++|+||++.|++.
T Consensus       497 ~~P~gaE~tG~~fspDg~tlFvn  519 (524)
T PF05787_consen  497 VGPNGAEITGPCFSPDGRTLFVN  519 (524)
T ss_pred             cCCCCcccccceECCCCCEEEEE
Confidence            34455569999999999987654

>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein

Probab=80.27  E-value=9.5  Score=22.36  Aligned_cols=68  Identities=15%  Similarity=0.194  Sum_probs=50.0

Q ss_pred             EEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeE-----------EEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         68 HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNH-----------ISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        68 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~-----------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..+....||.+.+++..+++.+..+.....+- +..           .....+..+-++--+||.+.+-|..++..+...
T Consensus        43 l~f~d~~~G~v~V~~~~~G~~va~~~~g~~GF-vrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i~L~  121 (135)
T TIGR03054        43 LVFEDRPDGAVAVVETPDGRLVAILEPGQNGF-VRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSIELN  121 (135)
T ss_pred             EEEecCCCCeEEEEECCCCCEEEEecCCCCch-hhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEEEEe
Confidence            34566789999999999999998884443332 211           123457778889999999999999999887654

In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-07
2h9l_A	329	Wdr5delta23 Length = 329		2e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-07
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-07
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-07
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-07
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		3e-07
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-07
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		9e-07
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-06
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		1e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-06
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		2e-06
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-06
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-06
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		7e-06
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		1e-05
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		4e-05
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		5e-05
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		5e-05
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		5e-05
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		5e-05
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		7e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		2e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		2e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		3e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		3e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		3e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		3e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		6e-04
3vl1_A	420	Crystal Structure Of Yeast Rpn14 Length = 420		7e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 12/127 (9%)
Query: 4   LTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITC 59
           L QT   HS +    + +   +  AS+  D+TV L++     ++G L+Q    H  ++  
Sbjct: 172 LLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVRG 226
Query: 60  LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
           + F+P+G  + S SDD ++ ++      L+ L   +   ++VN ++  P G+   S   D
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDD 283
Query: 120 KTLRTWN 126
           KT++ WN
Sbjct: 284 KTVKLWN 290

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 220 DYSKGK 225

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 118 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 177
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 178 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 236
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 237 DYSKGK 242

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 101 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 160
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 161 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 219
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 220 DYSKGK 225

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 100 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 159
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 160 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 218
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 219 DYSKGK 224

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 226 DYSKGK 231

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 97  KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 156
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 157 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 215
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 216 DYSKGK 221

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 106 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 165
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 166 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 224
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 225 DYSKGK 230

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 223 DYSKGK 228

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 223 DYSKGK 228

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 102 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 161
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 162 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 220
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 221 DYSKGK 226

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 226 DYSKGK 231

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 107 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 166
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 167 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 225
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 226 DYSKGK 231

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 163
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 223 DYSKGK 228

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 123 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 182
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 183 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 242 DYSKGK 247

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+   K    L  H   ++ + F  +
Sbjct: 125 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRD 184
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 185 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 243
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 244 DYSKGK 249

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 3   TLTQTFVTHSHTASVRSVAATS--KLAASSGADETVVLYDMVKR-KQSGALMQHEGTITC 59
           T T+ FV   HT  V SVA +S  +   S   D+T+ L++ +   K +     H   ++C
Sbjct: 96  TTTRRFV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 153
Query: 60  LKFTPEGSH--LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
           ++F+P  S+  ++SC  D  + ++ + + +L K     H G  +N +++ P G L  S G
Sbjct: 154 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTG-YLNTVTVSPDGSLCASGG 211
Query: 118 KDKTLRTWNLVKGRSAY 134
           KD     W+L +G+  Y
Sbjct: 212 KDGQAMLWDLNEGKHLY 228

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 3   TLTQTFVTHSHTASVRSVAATS--KLAASSGADETVVLYDMVKR-KQSGALMQHEGTITC 59
           T T+ FV   HT  V SVA +S  +   S   D+T+ L++ +   K +     H   ++C
Sbjct: 119 TTTRRFV--GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSC 176
Query: 60  LKFTPEGSH--LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
           ++F+P  S+  ++SC  D  + ++ + + +L K     H G  +N +++ P G L  S G
Sbjct: 177 VRFSPNSSNPIIVSCGWDKLVKVWNLANCKL-KTNHIGHTG-YLNTVTVSPDGSLCASGG 234
Query: 118 KDKTLRTWNLVKGRSAY 134
           KD     W+L +G+  Y
Sbjct: 235 KDGQAMLWDLNEGKHLY 251

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 68/138 (49%), Gaps = 15/138 (10%)
Query: 3   TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVK--RKQSGALMQHEGTITCL 60
           T  + FV H       + +  ++   S+GA+  + L++++   +  S     H   ++C+
Sbjct: 109 TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCV 168
Query: 61  KFTP----------EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
           +++P             +  S   DG + ++   ++Q+   FK AH+ + VNH+SI P+G
Sbjct: 169 RYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFK-AHE-SNVNHLSISPNG 225
Query: 111 KLALSVGKDKTLRTWNLV 128
           K   + GKDK L  W+++
Sbjct: 226 KYIATGGKDKKLLIWDIL 243

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+        L  H   ++ + F  +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D TL+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTLKLW 222
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 223 DYSKGK 228

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 9   VTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQ--SGALMQHEGTITCLKFTP 64
           V +SHT  V+ V    + +L AS+  D+TV LY   +        L  HE T+  L F P
Sbjct: 145 VLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP 204
Query: 65  EGSHLISCSDDGSIAIFR 82
            G  L SCSDD ++ I+R
Sbjct: 205 SGQRLASCSDDRTVRIWR 222

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 22/152 (14%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +TF  H     +        L AS   D+TV ++ +  ++    L +H   + C+ + PE
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 287
Query: 66  --------------------GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS 105
                               G  L+S S D +I ++ V +     L         V  + 
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVL 345
Query: 106 IHPSGKLALSVGKDKTLRTWNLVKGRSAYITN 137
            H  GK  LS   DKTLR W+    R     N
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 4   LTQTFVTHSHTASVRSV----AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITC 59
           L Q+F  H H A V  +    + T     S G D+  +++DM   +   A   HE  +  
Sbjct: 188 LLQSF--HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNS 245
Query: 60  LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
           +++ P G    S SDD +  ++ + + +   ++ K       + +    SG+L  +   D
Sbjct: 246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND 305
Query: 120 KTLRTWNLVKG 130
            T+  W+++KG
Sbjct: 306 YTINVWDVLKG 316

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 1/126 (0%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +T   HS+     +    S L  S   DE+V ++D+        L  H   ++ + F  +
Sbjct: 104 KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRD 163
Query: 66  GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTW 125
           GS ++S S DG   I+   S Q  K          V+ +   P+GK  L+   D  L+ W
Sbjct: 164 GSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATLDNDLKLW 222
Query: 126 NLVKGR 131
           +  KG+
Sbjct: 223 DYSKGK 228

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 13  HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGAL-------MQHEGTITCLKFT 63
           HT  V SV       L AS+G D T+VLY+ V   ++G         + H G++  L ++
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 64  PEGSHLISCSDDGSIAIFRVGSWQLEK 90
           P+G+ + S S D +I I+ V + ++EK
Sbjct: 249 PDGTKIASASADKTIKIWNVATLKVEK 275

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 5   TQTFVTHSHTASVRSVAAT--SKLAASSGADETVVLYDMV---KRKQSGALMQHEGTITC 59
           T+ FV   HT  V SVA +  ++   S+  D T+ L++ +   K   S     H   ++C
Sbjct: 465 TRRFV--GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSC 522
Query: 60  LKFTPE--GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG 117
           ++F+P      ++S S D ++ ++ + + +L       H G  V+ +++ P G L  S G
Sbjct: 523 VRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGY-VSTVAVSPDGSLCASGG 580
Query: 118 KDKTLRTWNLVKGRSAY 134
           KD  +  W+L +G+  Y
Sbjct: 581 KDGVVLLWDLAEGKKLY 597

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13  HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
           HT  V S+  A  ++L  S   D +  L+D+ +         HE  I  + F P G+   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71  SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
           + SDD +  +F + + Q    +   +    +  +S   SG+L L+   D     W+ +K 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSA 133
             A
Sbjct: 303 DRA 305

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13  HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
           HT  V S+  A  ++L  S   D +  L+D+ +         HE  I  + F P G+   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71  SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
           + SDD +  +F + + Q    +   +    +  +S   SG+L L+   D     W+ +K 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSA 133
             A
Sbjct: 303 DRA 305

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13  HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
           HT  V S+  A  ++L  S   D +  L+D+ +         HE  I  + F P G+   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71  SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
           + SDD +  +F + + Q    +   +    +  +S   SG+L L+   D     W+ +K 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSA 133
             A
Sbjct: 303 DRA 305

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13  HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
           HT  V S+  A  ++L  S   D +  L+D+ +         HE  I  + F P G+   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 71  SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
           + SDD +  +F + + Q    +   +    +  +S   SG+L L+   D     W+ +K 
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 131 RSA 133
             A
Sbjct: 303 DRA 305

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 2/123 (1%)
Query: 13  HTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
           HT  V S+  A  ++L  S   D +  L+D+ +         HE  I  + F P G+   
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 71  SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
           + SDD +  +F + + Q    +   +    +  +S   SG+L L+   D     W+ +K 
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 131 RSA 133
             A
Sbjct: 314 DRA 316

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 15/137 (10%)
Query: 2   YTLTQTFVTHSHTASVRSVAA---TSKLAASSGADETVVLY------DMVKRKQSGALMQ 52
           +TL       +H  ++RSVA    TS LAA S  D TV ++      D        A+++
Sbjct: 46  FTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS-FDSTVSIWAKEESADRTFEMDLLAIIE 104
Query: 53  -HEGTITCLKFTPEGSHLISCSDDGSIAIFRV---GSWQLEKLFKKAHKGTAVNHISIHP 108
            HE  +  + ++ +G +L +CS D S+ I+     G  + E +         V H+  HP
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE-EYECISVLQEHSQDVKHVIWHP 163
Query: 109 SGKLALSVGKDKTLRTW 125
           S  L  S   D T+R W
Sbjct: 164 SEALLASSSYDDTVRIW 180

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
           Q FV H        +   + +  S   D+T+ ++  +K +    L+ H   ++ ++  P 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 65  -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
                +   +IS  +D  +  + +  +Q+E  F      + +N ++  P G L  S GKD
Sbjct: 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 217
Query: 120 KTLRTWNLVKGRSAY 134
             +  WNL   ++ Y
Sbjct: 218 GEIMLWNLAAKKAMY 232

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
           Q FV H        +   + +  S   D+T+ ++  +K +    L+ H   ++ ++  P 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 65  -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
                +   +IS  +D  +  + +  +Q+E  F      + +N ++  P G L  S GKD
Sbjct: 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 217
Query: 120 KTLRTWNLVKGRSAY 134
             +  WNL   ++ Y
Sbjct: 218 GEIMLWNLAAKKAMY 232

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
           Q FV H        +   + +  S   D+T+ ++  +K +    L+ H   ++ ++  P 
Sbjct: 95  QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 153
Query: 65  -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
                +   +IS  +D  +  + +  +Q+E  F      + +N ++  P G L  S GKD
Sbjct: 154 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 211
Query: 120 KTLRTWNLVKGRSAY 134
             +  WNL   ++ Y
Sbjct: 212 GEIMLWNLAAKKAMY 226

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
           Q FV H        +   + +  S   D+T+ ++  +K +    L+ H   ++ ++  P 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 65  -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
                +   +IS  +D  +  + +  +Q+E  F      + +N ++  P G L  S GKD
Sbjct: 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 217
Query: 120 KTLRTWNLVKGRSAY 134
             +  WNL   ++ Y
Sbjct: 218 GEIMLWNLAAKKAMY 232

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
           Q FV H        +   + +  S   D+T+ ++  +K +    L+ H   ++ ++  P 
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 65  -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
                +   +IS  +D  +  + +  +Q+E  F      + +N ++  P G L  S GKD
Sbjct: 160 EKADDDSVTIISAGNDKMVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 217
Query: 120 KTLRTWNLVKGRSAY 134
             +  WNL   ++ Y
Sbjct: 218 GEIMLWNLAAKKAMY 232

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 9/135 (6%)
Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP- 64
           Q FV H        +   +    S   D+T+ ++  +K +    L+ H   ++ ++  P 
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPN 159
Query: 65  -----EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
                +   +IS  +D  +  + +  +Q+E  F      + +N ++  P G L  S GKD
Sbjct: 160 EKADDDSVTIISAGNDKXVKAWNLNQFQIEADF--IGHNSNINTLTASPDGTLIASAGKD 217
Query: 120 KTLRTWNLVKGRSAY 134
             +  WNL   ++ Y
Sbjct: 218 GEIXLWNLAAKKAXY 232

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 7/128 (5%)
Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
           K TL    +   HT SV  +    ++  +  +D TV ++D+   +    L+ H   +  L
Sbjct: 160 KNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL 219
Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG--TAVNHISIHPSGKLALSVGK 118
           +F      +++CS D SIA++ + S   +   ++   G   AVN +      K  +S   
Sbjct: 220 RFN--NGMMVTCSKDRSIAVWDMAS-PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274
Query: 119 DKTLRTWN 126
           D+T++ WN
Sbjct: 275 DRTIKVWN 282

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 13  HTASVRSVAATS---KLAASSGADETVVLYDM-VKRKQSGALMQHEGTITCLKFTPEGSH 68
           HTA V S++  S    +  S   D TV L+D+ +  +       HEG I  +KF P+G  
Sbjct: 204 HTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQR 263
Query: 69  LISCSDDGSIAIF--RVGSWQLEKLFKKAHKG----TAVNHISIHPSGKLALSVGKDKTL 122
             + SDDG+  +F  R G  QL+   ++  +       V  ++   SG+L  +   +   
Sbjct: 264 FGTGSDDGTCRLFDMRTGH-QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDC 322
Query: 123 RTWN 126
             W+
Sbjct: 323 YVWD 326

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 9   VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
           V   H ASVR+V+    +  S   D T++++D+ + K    L  H   I    +  E   
Sbjct: 265 VLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKR 324
Query: 69  LISCSDDGSIAIFRVGSWQLE--KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
            IS S D +I I     W LE  +L       TA+  + +  S K  +S   D ++R W+
Sbjct: 325 CISASXDTTIRI-----WDLENGELXYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWD 378

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 9   VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
           V   H ASVR+V+    +  S   D T++++D+ + K    L  H   I    +  E   
Sbjct: 265 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR 324
Query: 69  LISCSDDGSIAIFRVGSWQLE--KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
            IS S D +I I     W LE  +L       TA+  + +  S K  +S   D ++R W+
Sbjct: 325 CISASMDTTIRI-----WDLENGELMYTLQGHTALVGL-LRLSDKFLVSAAADGSIRGWD 378

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 53   HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL-EKLFKKAHKGTAVNHISIHPSGK 111
            H+  +  ++FT +G  LIS S+D   ++ +V +WQ  + +F +AH+ T  +   +  S  
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSED---SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRL 1065
Query: 112  LALSVGKDKTLRTWNLVKGR 131
            L+ S   D T++ WN++ GR
Sbjct: 1066 LSWSF--DGTVKVWNVITGR 1083

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 53   HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL-EKLFKKAHKGTAVNHISIHPSGK 111
            H+  +  ++FT +G  LIS S+D   ++ +V +WQ  + +F +AH+ T  +   +  S  
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSED---SVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRL 1058
Query: 112  LALSVGKDKTLRTWNLVKGR 131
            L+ S   D T++ WN++ GR
Sbjct: 1059 LSWSF--DGTVKVWNVITGR 1076

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 5/123 (4%)
Query: 13  HTASVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
           H+A V  VA ++    A S+  D ++ L+++   +     + H   +  + F+P+   ++
Sbjct: 66  HSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 71  SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLV 128
           S   D ++ ++ V    +  L + AH    V+ +   PS    + +S G D  ++ W+L 
Sbjct: 126 SGGRDNALRVWNVKGECMHTLSRGAHT-DWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 129 KGR 131
            GR
Sbjct: 185 TGR 187

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 17  VRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD 74
           +RSV  +   K  A+   D  + ++D+  RK    L  HE  I  L + P G  L+S S 
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 185
Query: 75  DGSIAIF--RVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWN 126
           D ++ I+  R G   L    +       V  +++ P  GK   +   D+ +R W+
Sbjct: 186 DRTVRIWDLRTGQCSLTLSIED-----GVTTVAVSPGDGKYIAAGSLDRAVRVWD 235

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 31  GADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK 90
           G    + +Y + ++  +G L+ H G I+ L+F      L+S SDDG++ I+  G+   + 
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQN 283
Query: 91  LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
            F   H  + V+   +     ++ S+  D ++R W+L
Sbjct: 284 CF-YGHSQSIVSASWVGDDKVISCSM--DGSVRLWSL 317

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 60  LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD 119
           L  +P+     SC  DG+IA++ + +  L + F+    G +   I I   G    + G D
Sbjct: 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASC--IDISNDGTKLWTGGLD 204
Query: 120 KTLRTWNLVKGR 131
            T+R+W+L +GR
Sbjct: 205 NTVRSWDLREGR 216

>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14 Length = 420

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 53  HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
           H   IT LKF P G  LIS S D  + I+ V      +     H+ T V  I+I   G+ 
Sbjct: 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRAT-VTDIAIIDRGRN 195
Query: 113 ALSVGKDKTLRTWNLVKGRSAYITN 137
            LS   D T+R W    G + +  N
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFN 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.96
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.95
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.95
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.95
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.95
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.94
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.94
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.94
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.94
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.94
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.94
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.94
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.93
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.93
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.93
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.93
2pm7_B	297	Protein transport protein SEC13, protein transport	99.93
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.92
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.92
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.92
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.92
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.92
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.92
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.92
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.92
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.92
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.92
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.91
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.91
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.91
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.91
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.91
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.91
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.91
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.91
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.91
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.91
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.91
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.9
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.9
2pm7_B	297	Protein transport protein SEC13, protein transport	99.9
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.9
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.9
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.9
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.9
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.9
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.9
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.9
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.9
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.9
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.9
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.9
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.9
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.9
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.89
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.89
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.89
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.89
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.89
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.89
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.89
3jro_A	753	Fusion protein of protein transport protein SEC13	99.89
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.89
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.89
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.89
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.89
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.89
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.88
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.88
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.88
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.88
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.88
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.88
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.87
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.87
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.87
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.87
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.87
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.87
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.87
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.87
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.87
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.87
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.87
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.86
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.86
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.86
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.86
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.86
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.86
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.86
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.86
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.86
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.86
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.86
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.86
3jro_A	753	Fusion protein of protein transport protein SEC13	99.85
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.85
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.85
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.85
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.85
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.84
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.83
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.81
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.81
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.8
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.79
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.79
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.77
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.71
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.71
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.66
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.63
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.63
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.63
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.61
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.6
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.6
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.57
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.57
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.56
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.56
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.54
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.54
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.54
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.54
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.54
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.54
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.52
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.52
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.52
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.52
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.51
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.51
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.5
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.48
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.46
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.46
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.45
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.42
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.42
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.41
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.4
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.4
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.39
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.37
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.36
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.36
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.36
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.35
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.3
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.29
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.26
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.26
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.26
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.26
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.24
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.24
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.23
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.2
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.18
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.16
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.14
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.12
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.12
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.1
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.1
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.09
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.08
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.08
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.07
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.05
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.03
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.03
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.98
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	98.97
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.92
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.92
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.91
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.89
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	98.88
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.88
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	98.87
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.86
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.86
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.84
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.83
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.82
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.82
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.82
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.8
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.8
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.8
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.77
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.76
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.75
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.74
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.73
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	98.73
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.7
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	98.67
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.67
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	98.67
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.63
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	98.63
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.56
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.55
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.53
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.52
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.52
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.51
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.49
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.47
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.46
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.44
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.39
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.37
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	98.35
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.34
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.34
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	98.33
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.32
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.26
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.25
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.23
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.21
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.16
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.09
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.04
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.01
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.98
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.95
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.88
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.82
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.81
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.8
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.74
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.68
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	97.61
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.57
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.54
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.46
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.41
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	97.28
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.25
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.24
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.2
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.2
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.17
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.17
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.16
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.13
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.12
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.91
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.81
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.78
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	96.71
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	96.67
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.63
3v65_B	386	Low-density lipoprotein receptor-related protein;	96.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.5
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	96.33
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	96.3
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.26
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.22
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.15
4a2l_A	795	BT_4663, two-component system sensor histidine kin	96.07
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	96.03
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.77
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	95.61
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.6
3kya_A	496	Putative phosphatase; structural genomics, joint c	95.6
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.51
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.4
4a2l_A	795	BT_4663, two-component system sensor histidine kin	95.37
3v9f_A	781	Two-component system sensor histidine kinase/RESP	95.03
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.93
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.79
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	94.78
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.65
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	94.64
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	94.64
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.58
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	94.56
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.45
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	94.37
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.37
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	94.32
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.83
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.8
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.78
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.61
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	93.56
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	93.55
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	93.42
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	93.41
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	93.3
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	93.27
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	93.18
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.16
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	93.01
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.97
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	92.58
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.49
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.32
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	92.18
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	92.08
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	91.95
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.76
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	91.59
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	91.49
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	91.25
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	90.93
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.93
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	90.85
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	90.34
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.29
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.98
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	89.83
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	88.0
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	87.8
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	87.52
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	87.32
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	86.47
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.38
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	86.14
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	85.91
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	85.49
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	83.87
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	82.59
3al9_A	539	Plexin-A2; beta-propeller, membrane protein, signa	80.3

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.96  E-value=6.5e-27  Score=151.00  Aligned_cols=129  Identities=22%  Similarity=0.316  Sum_probs=114.5

Q ss_pred             CeeeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcE
Q psy11518          1 KYTLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSI   78 (139)
Q Consensus         1 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (139)
                      |+++.+++.  +|...|.++.|  +++++++++.|+.|++||+.+++.+..+..|...|.+++|+|+++++++++.|+.|
T Consensus         2 ~l~~~~~~~--~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            2 KLDIKKTFS--NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             CCCCEEEEE--EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             cceeEEeec--CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            456677776  56666666665  99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      ++||+.+++....+ ..|... |.+++|+|+++++++++.|+.|++||++++..+
T Consensus        80 ~vwd~~~~~~~~~~-~~h~~~-v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~  132 (304)
T 2ynn_A           80 RVFNYNTGEKVVDF-EAHPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL  132 (304)
T ss_dssp             EEEETTTCCEEEEE-ECCSSC-EEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred             EEEECCCCcEEEEE-eCCCCc-EEEEEEcCCCCEEEEECCCCeEEEEECCCCcch
Confidence            99999999988887 566665 999999999999999999999999999887443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.95  E-value=3.4e-26  Score=148.78  Aligned_cols=123  Identities=24%  Similarity=0.374  Sum_probs=110.3

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      .+...+.++.|  ++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++++...
T Consensus       162 ~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~  241 (321)
T 3ow8_A          162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA  241 (321)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred             CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence            44455666655  9999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..+ ..|... |.+++|+|++++|++++.|+.|++||+++++.+..+
T Consensus       242 ~~~-~~h~~~-v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~  286 (321)
T 3ow8_A          242 GTL-SGHASW-VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF  286 (321)
T ss_dssp             EEE-CCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEE-cCCCCc-eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEE
Confidence            777 455555 999999999999999999999999999999887664

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.95  E-value=3.7e-26  Score=149.98  Aligned_cols=131  Identities=17%  Similarity=0.280  Sum_probs=110.2

Q ss_pred             EEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCC-CEEEEecCCCcEEEEEe
Q psy11518          7 TFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEG-SHLISCSDDGSIAIFRV   83 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~   83 (139)
                      .+...+|...|.++.|  ++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ .++++++.|+.|++||+
T Consensus       120 ~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~  199 (344)
T 4gqb_B          120 KFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT  199 (344)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEET
T ss_pred             eccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccc
Confidence            3445578888888887  89999999999999999999999999999999999999999987 47899999999999999


Q ss_pred             CCceEEEEEEeCCCCcceeEEEEccC-CcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         84 GSWQLEKLFKKAHKGTAVNHISIHPS-GKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++++....+........+.+++|+|+ ++++++|+.|+.|++||+++++.+..+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~  254 (344)
T 4gqb_B          200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA  254 (344)
T ss_dssp             TSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE
T ss_pred             cccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc
Confidence            99988877754445555899999994 5688999999999999999998877653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.95  E-value=1.6e-26  Score=154.68  Aligned_cols=125  Identities=23%  Similarity=0.409  Sum_probs=113.9

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ..+|..+|.++.|  ++.++++|+.|+.|++||+.+++....+.+|...|.+++|+|+++++++|+.|+.|++||+.+++
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~  183 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE  183 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            4478888888887  78999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .+..+ ..|... |.+++|+|+++++++++.|+.|++||+++++.+..+
T Consensus       184 ~~~~~-~~h~~~-V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~  230 (410)
T 1vyh_C          184 CIRTM-HGHDHN-VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF  230 (410)
T ss_dssp             EEECC-CCCSSC-EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             eeEEE-cCCCCC-EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            87777 455555 999999999999999999999999999999877654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.95  E-value=1.8e-25  Score=144.38  Aligned_cols=128  Identities=26%  Similarity=0.373  Sum_probs=115.5

Q ss_pred             EEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518          7 TFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      .+...+|...|.++.|  ++++|++++.|+.|++|+..+++....+.+|...|.+++|+|+++++++++.|+.|++||++
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~   95 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS   95 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECC
Confidence            4455578888888887  89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +++....+ ..|... |.+++|+|+++++++++.|+.|++||+++++.+..+
T Consensus        96 ~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  145 (312)
T 4ery_A           96 SGKCLKTL-KGHSNY-VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTL  145 (312)
T ss_dssp             TCCEEEEE-ECCSSC-EEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             CCcEEEEE-cCCCCC-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEe
Confidence            99888877 455555 999999999999999999999999999998877654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.95  E-value=1.9e-25  Score=146.08  Aligned_cols=127  Identities=23%  Similarity=0.334  Sum_probs=111.8

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ..+|...|.++.+  +++++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+++++
T Consensus       180 ~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~  259 (340)
T 1got_B          180 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             EcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCc
Confidence            3467777777776  88999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ....+........+.+++|+|+++++++|+.|+.|++||+.+++.+..+
T Consensus       260 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~  308 (340)
T 1got_B          260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL  308 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEe
Confidence            7777643333334999999999999999999999999999998876654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.95  E-value=2.5e-25  Score=143.62  Aligned_cols=123  Identities=15%  Similarity=0.190  Sum_probs=105.9

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      .|..++.++.|  +++++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||++++...
T Consensus        53 ~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~  132 (304)
T 2ynn_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL  132 (304)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred             ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch
Confidence            45666666665  8999999999999999999999999999999999999999999999999999999999999887444


Q ss_pred             EEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         90 KLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ......|... |.+++|+| ++..+++++.|+.|++||+++++....
T Consensus       133 ~~~~~~h~~~-v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~  178 (304)
T 2ynn_A          133 EQTFEGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT  178 (304)
T ss_dssp             EEEECCCCSC-EEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE
T ss_pred             hhhhcccCCc-EEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence            3332555555 99999999 678999999999999999987765443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.94  E-value=3.2e-25  Score=145.02  Aligned_cols=125  Identities=21%  Similarity=0.334  Sum_probs=111.8

Q ss_pred             eecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         10 THSHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        10 ~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ..+|...+.++.| ++..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||++++..
T Consensus       139 ~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~  218 (340)
T 1got_B          139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC  218 (340)
T ss_dssp             EECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE
T ss_pred             ecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee
Confidence            4467888888887 555689999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ...+ ..|... |.+++|+|+++++++++.|+.|++||+++++.+..+
T Consensus       219 ~~~~-~~h~~~-v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~  264 (340)
T 1got_B          219 RQTF-TGHESD-INAICFFPNGNAFATGSDDATCRLFDLRADQELMTY  264 (340)
T ss_dssp             EEEE-CCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEE-cCCcCC-EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence            8777 455555 999999999999999999999999999998776554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.94  E-value=3.2e-25  Score=145.55  Aligned_cols=121  Identities=16%  Similarity=0.256  Sum_probs=105.3

Q ss_pred             eeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeE----EEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         14 TASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGA----LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        14 ~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ...|.++.| ....+++|+.||.|++||+.+++.+..    +.+|...|.+++|+|++++|++|+.|+.|++||+.+++.
T Consensus        82 ~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~  161 (344)
T 4gqb_B           82 EAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVV  161 (344)
T ss_dssp             SSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             CCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            456888888 456888999999999999998876544    347999999999999999999999999999999999999


Q ss_pred             EEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +..+ ..|... |.+++|+|++. ++++++.|+.|++||+++++....+
T Consensus       162 ~~~~-~~h~~~-V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          162 LSSY-RAHAAQ-VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI  208 (344)
T ss_dssp             EEEE-CCCSSC-EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC
T ss_pred             EEEE-cCcCCc-eEEEEecCCCCCceeeeccccccccccccccceeeee
Confidence            8887 566655 99999999885 7889999999999999999877654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.94  E-value=4.6e-25  Score=143.49  Aligned_cols=116  Identities=24%  Similarity=0.451  Sum_probs=105.1

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      .+|..+|.++.|  ++++|++|+.|+.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       203 ~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~  282 (321)
T 3ow8_A          203 EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC  282 (321)
T ss_dssp             CCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             cccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE
Confidence            356666666665  899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      +..+ ..|... |.+++|+|++++|++++.|+.|++||..
T Consensus       283 ~~~~-~~h~~~-v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          283 VHTF-FDHQDQ-VWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEE-CCCSSC-EEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEE-cCCCCc-EEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            8887 456555 9999999999999999999999999963

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.94  E-value=5.4e-25  Score=144.07  Aligned_cols=120  Identities=23%  Similarity=0.391  Sum_probs=106.0

Q ss_pred             EEeecceeeEEEEec--------CCcEEEEeCCCCeEEEEEccCC-------ceeeEEEecCCCeEEEEECCCCCEEEEe
Q psy11518          8 FVTHSHTASVRSVAA--------TSKLAASSGADETVVLYDMVKR-------KQSGALMQHEGTITCLKFTPEGSHLISC   72 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--------~~~~l~~~~~~~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~   72 (139)
                      ....+|...|.++.+        ++++|++|+.|+.|++||+.+.       .+...+.+|...|.+++|+|++.+++++
T Consensus        15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~   94 (343)
T 2xzm_R           15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS   94 (343)
T ss_dssp             EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE
T ss_pred             eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE
Confidence            345588889998865        7889999999999999998753       3456788999999999999999999999


Q ss_pred             cCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         73 SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        73 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      +.|+.|++||+++++....+ ..|... |.+++|+|+++++++++.|+.|++||+..
T Consensus        95 s~D~~v~lwd~~~~~~~~~~-~~h~~~-v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           95 SWDKTLRLWDLRTGTTYKRF-VGHQSE-VYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             ETTSEEEEEETTSSCEEEEE-ECCCSC-EEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             cCCCcEEEEECCCCcEEEEE-cCCCCc-EEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence            99999999999999888877 556655 99999999999999999999999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=2e-24  Score=142.08  Aligned_cols=130  Identities=23%  Similarity=0.389  Sum_probs=110.2

Q ss_pred             EEEEEeecceeeEEEEec----CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEE
Q psy11518          5 TQTFVTHSHTASVRSVAA----TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAI   80 (139)
Q Consensus         5 ~~~~~~~~~~~~v~~~~~----~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   80 (139)
                      ++.+.  +|...+.++.+    +++.+++|+.|+.|++||+.+++++..+..|...|.+++|+|++.++++++.|+.|++
T Consensus       189 ~~~~~--~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~l  266 (354)
T 2pbi_B          189 LQSFH--GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL  266 (354)
T ss_dssp             EEEEE--CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEEEc--CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEE
Confidence            34444  56666666554    4689999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ||++.......+........+.+++|+|+++++++++.|+.|++||+.+++.+..+
T Consensus       267 wd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l  322 (354)
T 2pbi_B          267 YDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSIL  322 (354)
T ss_dssp             EETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEE
T ss_pred             EECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEE
Confidence            99998887766633333334889999999999999999999999999998876554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.94  E-value=1.7e-24  Score=142.39  Aligned_cols=123  Identities=24%  Similarity=0.353  Sum_probs=109.4

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC--CCCEEEEecCCCcEEEEEeCCce
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP--EGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      +|...+.++.|  ++..+++++.|++|++||+++++.+..+.+|...|.+++|+|  +++++++++.|+.|++||+++++
T Consensus       152 ~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~  231 (354)
T 2pbi_B          152 MHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ  231 (354)
T ss_dssp             ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC
T ss_pred             ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            56777777776  788999999999999999999999999999999999999987  56899999999999999999999


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ....+ ..|... |.+++|+|++.++++++.|+.|++||+++++.+..+
T Consensus       232 ~~~~~-~~h~~~-v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~  278 (354)
T 2pbi_B          232 CVQAF-ETHESD-VNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY  278 (354)
T ss_dssp             EEEEE-CCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEe-cCCCCC-eEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence            88777 455555 999999999999999999999999999988765543

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.94  E-value=4e-24  Score=138.02  Aligned_cols=124  Identities=26%  Similarity=0.388  Sum_probs=111.7

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      .+|...+.++.|  ++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+++++.
T Consensus        62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  141 (312)
T 4ery_A           62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC  141 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE
T ss_pred             ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE
Confidence            467777777776  899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ...+ ..|... +.+++|+|+++++++++.|+.|++||+++++.+..+
T Consensus       142 ~~~~-~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~  187 (312)
T 4ery_A          142 LKTL-PAHSDP-VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL  187 (312)
T ss_dssp             EEEE-CCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEe-cCCCCc-EEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE
Confidence            8777 445444 999999999999999999999999999998876554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.94  E-value=2.1e-24  Score=140.17  Aligned_cols=120  Identities=21%  Similarity=0.341  Sum_probs=106.0

Q ss_pred             EeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccC-----CceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEE
Q psy11518          9 VTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVK-----RKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAI   80 (139)
Q Consensus         9 ~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   80 (139)
                      ...+|...|.++.+   ++++|++|+.|+.|++|++..     +.++..+.+|...|.+++|+|+++++++++.|+.|++
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~   91 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL   91 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence            34588999998887   347999999999999999864     3456788899999999999999999999999999999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ||+.+++....+ ..|... |.+++|+|++.++++++.|+.|++||++..
T Consensus        92 wd~~~~~~~~~~-~~h~~~-v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~  139 (319)
T 3frx_A           92 WDVATGETYQRF-VGHKSD-VMSVDIDKKASMIISGSRDKTIKVWTIKGQ  139 (319)
T ss_dssp             EETTTTEEEEEE-ECCSSC-EEEEEECTTSCEEEEEETTSCEEEEETTSC
T ss_pred             EECCCCCeeEEE-ccCCCc-EEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence            999999988887 566665 999999999999999999999999999753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.94  E-value=2e-24  Score=141.57  Aligned_cols=127  Identities=20%  Similarity=0.315  Sum_probs=101.8

Q ss_pred             eeeEEEEEeeccee-eEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeE---EEecCCCeEEEEECCCCCEEEEecCC
Q psy11518          2 YTLTQTFVTHSHTA-SVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGA---LMQHEGTITCLKFTPEGSHLISCSDD   75 (139)
Q Consensus         2 ~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d   75 (139)
                      ++.++++.  +|.. .+.+++|  ++++|++|+.|+.|++||+.++.....   ..+|...|.+++|+|++++|++++.|
T Consensus         5 ~~~~~~~~--~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D   82 (345)
T 3fm0_A            5 LVLLGRVP--AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD   82 (345)
T ss_dssp             EEEEEEEC--CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEeeeec--CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC
Confidence            34455555  5554 5555554  999999999999999999988764322   25799999999999999999999999


Q ss_pred             CcEEEEEeCCceE--EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         76 GSIAIFRVGSWQL--EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        76 ~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +.+++||...+..  ...+ ..|... |.+++|+|++++|++++.|+.|++||++++..
T Consensus        83 ~~v~iw~~~~~~~~~~~~~-~~h~~~-v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~  139 (345)
T 3fm0_A           83 ATTCIWKKNQDDFECVTTL-EGHENE-VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE  139 (345)
T ss_dssp             SCEEEEEECCC-EEEEEEE-CCCSSC-EEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred             CcEEEEEccCCCeEEEEEc-cCCCCC-ceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence            9999999987653  3344 345544 99999999999999999999999999987643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.94  E-value=5.8e-25  Score=147.11  Aligned_cols=124  Identities=27%  Similarity=0.419  Sum_probs=112.7

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      .+|...|.++.|  ++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||++++..
T Consensus       147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~  226 (410)
T 1vyh_C          147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC  226 (410)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            467778888877  889999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ...+ ..|... +.+++|+|++.++++++.|+.|++||+++++....+
T Consensus       227 ~~~~-~~h~~~-v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~  272 (410)
T 1vyh_C          227 VKTF-TGHREW-VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL  272 (410)
T ss_dssp             EEEE-ECCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             EEEE-eCCCcc-EEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEe
Confidence            8887 556655 999999999999999999999999999998776554

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.93  E-value=9.4e-24  Score=137.08  Aligned_cols=126  Identities=24%  Similarity=0.407  Sum_probs=106.0

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ..+|...|.++.+  ++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||++...
T Consensus        61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~  140 (319)
T 3frx_A           61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC  140 (319)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE
T ss_pred             EeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe
Confidence            4467777777776  89999999999999999999999999999999999999999999999999999999999975321


Q ss_pred             EE-----------------------------------------------EEEEeCCCCcceeEEEEccCCcEEEEEcCCC
Q psy11518         88 LE-----------------------------------------------KLFKKAHKGTAVNHISIHPSGKLALSVGKDK  120 (139)
Q Consensus        88 ~~-----------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~  120 (139)
                      ..                                               ..+ ..|.. +|.+++|+|++++|++++.|+
T Consensus       141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~h~~-~v~~~~~sp~g~~l~s~~~dg  218 (319)
T 3frx_A          141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF-IGHNS-NINTLTASPDGTLIASAGKDG  218 (319)
T ss_dssp             EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEE-CCCCS-CEEEEEECTTSSEEEEEETTC
T ss_pred             EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheee-cCCCC-cEEEEEEcCCCCEEEEEeCCC
Confidence            11                                               011 12333 489999999999999999999


Q ss_pred             eEEEEEcCCCceeEEEe
Q psy11518        121 TLRTWNLVKGRSAYITN  137 (139)
Q Consensus       121 ~i~i~d~~~~~~~~~~~  137 (139)
                      .|++||+++++.+..+.
T Consensus       219 ~i~iwd~~~~~~~~~~~  235 (319)
T 3frx_A          219 EIMLWNLAAKKAMYTLS  235 (319)
T ss_dssp             EEEEEETTTTEEEEEEE
T ss_pred             eEEEEECCCCcEEEEec
Confidence            99999999988776653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3e-24  Score=140.00  Aligned_cols=117  Identities=26%  Similarity=0.408  Sum_probs=95.2

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccC-------CceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVK-------RKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      +|...|.++.|  ++++|++|+.|+.|++||+..       .+.+..+.+|...|.+++|+|++++|++++.|+.|++||
T Consensus        56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd  135 (330)
T 2hes_X           56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE  135 (330)
T ss_dssp             CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            37788888876  899999999999999999853       345677889999999999999999999999999999999


Q ss_pred             eCCc----eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         83 VGSW----QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        83 ~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ++..    +....+ ..|... |.+++|+|++.+|++++.|+.|++||++++
T Consensus       136 ~~~~~~~~~~~~~~-~~h~~~-v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          136 TDESGEEYECISVL-QEHSQD-VKHVIWHPSEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             CCTTCCCCEEEEEE-CCCSSC-EEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred             ccCCCCCeEEEEEe-ccCCCc-eEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence            9432    344444 455554 999999999999999999999999999776

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.93  E-value=2.2e-24  Score=142.43  Aligned_cols=120  Identities=18%  Similarity=0.271  Sum_probs=102.3

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCC----eEEEEEccCCce----eeEEEecCCCeEEEEECCCCCEEEEecCCCcEE
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADE----TVVLYDMVKRKQ----SGALMQHEGTITCLKFTPEGSHLISCSDDGSIA   79 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~----~v~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (139)
                      ..+|...+.++.|  ++..+++++.++    .++.|+......    ...+.+|...|++++|+|++++||+|+.|+.|+
T Consensus       215 ~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~  294 (365)
T 4h5i_A          215 DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA  294 (365)
T ss_dssp             CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred             cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE
Confidence            3456677777766  999999998776    688899876643    345678999999999999999999999999999


Q ss_pred             EEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         80 IFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      +||+++++.+..+...|... |++++|+||+++|++++.|++|+|||+...
T Consensus       295 iwd~~~~~~~~~~~~gH~~~-V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          295 LVKLKDLSMSKIFKQAHSFA-ITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEETTTTEEEEEETTSSSSC-EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEECCCCcEEEEecCcccCC-EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            99999999888774556655 999999999999999999999999999643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=1.5e-24  Score=151.32  Aligned_cols=126  Identities=22%  Similarity=0.370  Sum_probs=111.5

Q ss_pred             ecceeeEEEEec--CCc-EEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         11 HSHTASVRSVAA--TSK-LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~-~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      .+|...|.++.|  ++. .|++|+.|+.|++||..+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+++
T Consensus       144 ~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~  223 (611)
T 1nr0_A          144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT  223 (611)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCc
Confidence            467778888887  555 69999999999999999988889999999999999999999999999999999999999998


Q ss_pred             EEEEEEe------CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         88 LEKLFKK------AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        88 ~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ....+..      .|... |.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus       224 ~~~~~~~~~~~~~~h~~~-V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~  278 (611)
T 1nr0_A          224 KTGVFEDDSLKNVAHSGS-VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  278 (611)
T ss_dssp             EEEECBCTTSSSCSSSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EeeeeccccccccccCCC-EEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeec
Confidence            8777632      45554 9999999999999999999999999999988776553

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=5.5e-24  Score=141.72  Aligned_cols=125  Identities=22%  Similarity=0.288  Sum_probs=110.7

Q ss_pred             ecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-------ceeeEEEecCCCeEEEEECCCC-CEEEEecCCCcEE
Q psy11518         11 HSHTASVRSVAA---TSKLAASSGADETVVLYDMVKR-------KQSGALMQHEGTITCLKFTPEG-SHLISCSDDGSIA   79 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~   79 (139)
                      .+|...|.++.|   ++++|++|+.|+.|++||+.++       +++..+.+|...|.+++|+|++ +++++++.|+.|+
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~  157 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVIL  157 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEE
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEE
Confidence            467788888876   7889999999999999999887       6678899999999999999997 6999999999999


Q ss_pred             EEEeCCceEEEEEE-eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         80 IFRVGSWQLEKLFK-KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        80 ~~d~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +||+++++....+. ..|.. .|.+++|+|+++++++++.|+.|++||+++++.+..+
T Consensus       158 iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~  214 (402)
T 2aq5_A          158 VWDVGTGAAVLTLGPDVHPD-TIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEK  214 (402)
T ss_dssp             EEETTTTEEEEEECTTTCCS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             EEECCCCCccEEEecCCCCC-ceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeee
Confidence            99999998887774 33444 4999999999999999999999999999999887765

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.93  E-value=1e-24  Score=143.70  Aligned_cols=119  Identities=18%  Similarity=0.192  Sum_probs=101.0

Q ss_pred             ecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCC-CEEEEecCCCcEEEEEeCCc
Q psy11518         11 HSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEG-SHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ..+...+.++.|   ++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ ++|++++.|+.|++||++++
T Consensus       223 ~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          223 CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             ccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence            345566777776   46789999999999999999999999999999999999999986 67899999999999999998


Q ss_pred             eEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +....+  .|... |.+++|+| ++.+|++++.|+.|++||+.+...
T Consensus       303 ~~~~~~--~H~~~-V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          303 EVFRDL--SHRDF-VTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEEEEC--CCSSC-EEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             cEeEEC--CCCCC-EEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            877654  55555 99999998 789999999999999999976543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.93  E-value=1.4e-23  Score=137.62  Aligned_cols=121  Identities=25%  Similarity=0.382  Sum_probs=104.2

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC--ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      .+|...|.++.|  ++++|++|+.|+.+++|+...+  +.+..+.+|...|.+++|+|++++|++++.|+.|++||++.+
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            468888888887  8999999999999999998776  456788899999999999999999999999999999999876


Q ss_pred             eE---EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         87 QL---EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        87 ~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      ..   ...+ ..|... |.+++|+|++++|++++.|+.|++||+++++..
T Consensus       138 ~~~~~~~~~-~~h~~~-v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~  185 (345)
T 3fm0_A          138 DEYECVSVL-NSHTQD-VKHVVWHPSQELLASASYDDTVKLYREEEDDWV  185 (345)
T ss_dssp             SCEEEEEEE-CCCCSC-EEEEEECSSSSCEEEEETTSCEEEEEEETTEEE
T ss_pred             CCeEEEEEe-cCcCCC-eEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE
Confidence            42   3333 345544 999999999999999999999999999887644

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.93  E-value=1.3e-23  Score=146.60  Aligned_cols=124  Identities=31%  Similarity=0.515  Sum_probs=106.9

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE-------ecCCCeEEEEECCCCCEEEEecCCCcEEE
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM-------QHEGTITCLKFTPEGSHLISCSDDGSIAI   80 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   80 (139)
                      ..+|...|.++.|  ++++|++|+.|+.|++||..+++.+..+.       +|...|.+++|+|++++|++++.|+.|++
T Consensus       186 l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~l  265 (611)
T 1nr0_A          186 FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI  265 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            3467788888876  89999999999999999999998888774       79999999999999999999999999999


Q ss_pred             EEeCCceEEEEEE------------------------------------------eCCCCcceeEEEEccCCcEEEEEcC
Q psy11518         81 FRVGSWQLEKLFK------------------------------------------KAHKGTAVNHISIHPSGKLALSVGK  118 (139)
Q Consensus        81 ~d~~~~~~~~~~~------------------------------------------~~~~~~~v~~~~~~~~~~~l~~~~~  118 (139)
                      ||+.+++....+.                                          ..|.. .|.+++|+|++++|++++.
T Consensus       266 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~  344 (611)
T 1nr0_A          266 WNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK-AITALSSSADGKTLFSADA  344 (611)
T ss_dssp             EETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEET
T ss_pred             EeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCC-CEEEEEEeCCCCEEEEEeC
Confidence            9998877654432                                          12333 4999999999999999999


Q ss_pred             CCeEEEEEcCCCceeE
Q psy11518        119 DKTLRTWNLVKGRSAY  134 (139)
Q Consensus       119 d~~i~i~d~~~~~~~~  134 (139)
                      |+.|++||+.+++...
T Consensus       345 D~~v~~Wd~~~~~~~~  360 (611)
T 1nr0_A          345 EGHINSWDISTGISNR  360 (611)
T ss_dssp             TSCEEEEETTTCCEEE
T ss_pred             CCcEEEEECCCCceee
Confidence            9999999999876543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.93  E-value=4.1e-24  Score=137.53  Aligned_cols=120  Identities=21%  Similarity=0.366  Sum_probs=101.7

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccC--CceeeEEEecCCCeEEEEECC--CCCEEEEecCCCcEEEEEe
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVK--RKQSGALMQHEGTITCLKFTP--EGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~   83 (139)
                      ..+|...|.++.|  ++++|++|+.|+.|++||+..  .+.+.++.+|...|.+++|+|  ++++|++++.|+.|++||+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            4578888888776  899999999999999999975  367788999999999999986  3899999999999999999


Q ss_pred             CCce--EEEEEEeCCCCcceeEEEEccC--CcEEEEEcCCCeEEEEEcCCCc
Q psy11518         84 GSWQ--LEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        84 ~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      .++.  ....+ ..|... |.+++|+|+  +.++++++.|+.|++||++++.
T Consensus        85 ~~~~~~~~~~~-~~h~~~-v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~  134 (297)
T 2pm7_B           85 ENGRWSQIAVH-AVHSAS-VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG  134 (297)
T ss_dssp             SSSCBCCCEEE-CCCSSC-EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred             CCCceEEEEEe-ecCCCc-eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence            8764  23333 334444 999999997  8899999999999999998763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.92  E-value=8e-24  Score=137.17  Aligned_cols=122  Identities=17%  Similarity=0.303  Sum_probs=105.0

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC----ceeeEEEecCCCeEEEEECC--CCCEEEEecCCCcEEEEE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKR----KQSGALMQHEGTITCLKFTP--EGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d   82 (139)
                      .+|...|.++.|  ++++|++|+.|+.|++||+.++    +....+.+|...|.+++|+|  +++++++++.|+.|++||
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            478888888887  8999999999999999999876    45677789999999999999  599999999999999999


Q ss_pred             eCCc---------eEEEEEEeCCCCcceeEEEEccC--CcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         83 VGSW---------QLEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        83 ~~~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ++.+         +....+ ..+... |.+++|+|+  ++++++++.|+.|++||+++++.+.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTL-NDSKGS-LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEE-CCCSSC-EEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTT
T ss_pred             cCCCcccccccCcceeeee-cccCCc-eeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhc
Confidence            9876         444444 344544 999999999  9999999999999999999877543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.92  E-value=1.4e-23  Score=144.82  Aligned_cols=119  Identities=28%  Similarity=0.447  Sum_probs=105.3

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ++.+|...|.+++|  +|++|++|+.|+.|++||. +++.+.++.+|...|++++|+|++++|++++.|+.|++||. ++
T Consensus        11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~   88 (577)
T 2ymu_A           11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NG   88 (577)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET-TS
T ss_pred             EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CC
Confidence            45688888888876  9999999999999999994 78889999999999999999999999999999999999996 56


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      +.+..+ ..|... |.+++|+|+++++++++.|+.+++|+.....
T Consensus        89 ~~~~~~-~~~~~~-v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~  131 (577)
T 2ymu_A           89 QLLQTL-TGHSSS-VRGVAFSPDGQTIASASDDKTVKLWNRNGQL  131 (577)
T ss_dssp             CEEEEE-CCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTCCE
T ss_pred             CEEEEE-ECCCCC-EEEEEECCCCCEEEEEcCCCceeecccccce
Confidence            666666 455554 9999999999999999999999999986543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.92  E-value=9.8e-24  Score=139.88  Aligned_cols=126  Identities=23%  Similarity=0.376  Sum_probs=108.5

Q ss_pred             ecceeeEEEEec---CCcEEEEeCCCCeEEEEEcc-CCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         11 HSHTASVRSVAA---TSKLAASSGADETVVLYDMV-KRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      .+|...+.++.+   ++.++++|+.|+.|++||+. ..+.+..+.+|...|.+++|+|+++++++++.|+.|++||++++
T Consensus       202 ~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~  281 (380)
T 3iz6_a          202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG  281 (380)
T ss_dssp             SSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT
T ss_pred             CCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC
Confidence            357777888776   78899999999999999997 45778889999999999999999999999999999999999999


Q ss_pred             eEEEEEEeCCC-----CcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         87 QLEKLFKKAHK-----GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        87 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .....+.....     ...+.+++|+|+++++++|+.||.|++||+.+++.+..+
T Consensus       282 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~  336 (380)
T 3iz6_a          282 HQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL  336 (380)
T ss_dssp             EEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred             cEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence            88877733211     123789999999999999999999999999988876554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1e-23  Score=137.02  Aligned_cols=123  Identities=10%  Similarity=0.118  Sum_probs=94.2

Q ss_pred             EEEEEeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCC---CeEEEEECCCCC-----------
Q psy11518          5 TQTFVTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEG---TITCLKFTPEGS-----------   67 (139)
Q Consensus         5 ~~~~~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~-----------   67 (139)
                      +..+..++....+.++++   ++.+|++++.|++|++||+++++.+.++.+|..   .+.+++|+|++.           
T Consensus       171 ~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~  250 (356)
T 2w18_A          171 KENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK  250 (356)
T ss_dssp             EEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-----
T ss_pred             eeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCc
Confidence            344555556667777777   679999999999999999999999999986532   344445544333           


Q ss_pred             ----------------------------------------------EEEEecCCCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         68 ----------------------------------------------HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        68 ----------------------------------------------~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                                                                    .+++++.|++|++||+.+++....+ ..|....+
T Consensus       251 w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL-~gH~~~vv  329 (356)
T 2w18_A          251 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALL-PPVSDQHW  329 (356)
T ss_dssp             -------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEE-CCC--CCC
T ss_pred             ceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEe-cCCCCCeE
Confidence                                                          3466778999999999999988887 45555435


Q ss_pred             eEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518        102 NHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      ..++|+|||++|++|+.|++|+|||+.
T Consensus       330 s~vafSPDG~~LaSGS~D~TIklWd~~  356 (356)
T 2w18_A          330 SFVKWSGTDSHLLAGQKDGNIFVYHYS  356 (356)
T ss_dssp             CEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCcEEEecCC
Confidence            568999999999999999999999963

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.92  E-value=5.7e-24  Score=141.02  Aligned_cols=121  Identities=19%  Similarity=0.309  Sum_probs=103.1

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecC-------CCeEEEEECCCCCEEEEecCCCcEEEE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHE-------GTITCLKFTPEGSHLISCSDDGSIAIF   81 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~d~~i~~~   81 (139)
                      .+|...|.++.|  ++++|++|+.|+.|++||+.+++.+..+..+.       ..|++++|+|+++++++|+.||.|++|
T Consensus       246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vw  325 (380)
T 3iz6_a          246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVW  325 (380)
T ss_dssp             CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEE
T ss_pred             CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEE
Confidence            467777777776  89999999999999999999998887776543       248899999999999999999999999


Q ss_pred             EeCCceEEEEEE---eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         82 RVGSWQLEKLFK---KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        82 d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      |+..++....+.   ..|.. .|.+++|+|++++|++|+.|+.|++|++...+.
T Consensus       326 d~~~~~~~~~~~~~~~~h~~-~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~  378 (380)
T 3iz6_a          326 DTLLAEMVLNLGTLQNSHEG-RISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK  378 (380)
T ss_dssp             ETTTCCEEEEECCSCSSCCC-CCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred             ECCCCceEEEEecccCCCCC-ceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence            999888776653   23444 499999999999999999999999999987654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.92  E-value=4.6e-24  Score=138.38  Aligned_cols=120  Identities=20%  Similarity=0.282  Sum_probs=98.8

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc--eeeEEEecCCCeEEEEECC--CCCEEEEecCCCcEEEEEe
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTP--EGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~   83 (139)
                      ..+|...|.++.|  ++++|++|+.|+.|++||+.+++  .+..+.+|...|.+++|+|  ++++|++++.|+.|++||+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~   88 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE   88 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence            3478888888887  89999999999999999998874  4677899999999999986  4899999999999999999


Q ss_pred             CCce--EEEEEEeCCCCcceeEEEEccC--CcEEEEEcCCCeEEEEEcCCCc
Q psy11518         84 GSWQ--LEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        84 ~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      +++.  ....+ ..|... |.+++|+|+  +.++++++.|+.|++||++++.
T Consensus        89 ~~~~~~~~~~~-~~h~~~-V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~  138 (316)
T 3bg1_A           89 ENGTWEKSHEH-AGHDSS-VNSVCWAPHDYGLILACGSSDGAISLLTYTGEG  138 (316)
T ss_dssp             SSSCCCEEEEE-CCCSSC-CCEEEECCTTTCSCEEEECSSSCEEEEEECSSS
T ss_pred             CCCcceEEEEc-cCCCCc-eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCC
Confidence            8864  33333 345544 999999997  7899999999999999998763

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.92  E-value=2.7e-23  Score=135.88  Aligned_cols=125  Identities=18%  Similarity=0.262  Sum_probs=109.0

Q ss_pred             eecceeeEEEEec--C---CcEEEEeCCCCeEEEEEccC-Ccee-eEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         10 THSHTASVRSVAA--T---SKLAASSGADETVVLYDMVK-RKQS-GALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~---~~~l~~~~~~~~v~i~~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      ..+|...|.++.|  +   +++|++|+.|+.|++||+.+ +..+ ..+.+|...|.+++|+|+++++++++.|+.|++||
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd  114 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWD  114 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEE
Confidence            3468888888887  4   58999999999999999987 5444 77889999999999999999999999999999999


Q ss_pred             eCCceEEEEEEeCCCCcceeEEEE--ccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         83 VGSWQLEKLFKKAHKGTAVNHISI--HPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +.+++.....  .|... |.+++|  +|+++++++++.|+.|++||+++++.+..+.
T Consensus       115 ~~~~~~~~~~--~~~~~-v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  168 (368)
T 3mmy_A          115 LSSNQAIQIA--QHDAP-VKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ  168 (368)
T ss_dssp             TTTTEEEEEE--ECSSC-EEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE
T ss_pred             cCCCCceeec--cccCc-eEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe
Confidence            9999877654  34544 999999  8999999999999999999999998776654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.92  E-value=4.3e-23  Score=137.31  Aligned_cols=118  Identities=25%  Similarity=0.394  Sum_probs=105.5

Q ss_pred             eEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         16 SVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .|.++.|  ++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+++++....+.
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            3666665  89999999999999999999999999999999999999999999999999999999999999998877763


Q ss_pred             eCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         94 KAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                        +... +.+++|+| +++++++++.|+.|++||+++++.+..+
T Consensus       205 --~~~~-v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~  245 (393)
T 1erj_A          205 --IEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL  245 (393)
T ss_dssp             --CSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             --cCCC-cEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee
Confidence              3333 89999999 8999999999999999999998776544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.8e-23  Score=134.80  Aligned_cols=119  Identities=20%  Similarity=0.280  Sum_probs=97.7

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC----ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKR----KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      ..+|...|.++.|  ++++|++|+.|+.|++||+...    +.+..+.+|...|.+++|+|++++|++++.|+.|++||.
T Consensus       103 ~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~  182 (330)
T 2hes_X          103 IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKD  182 (330)
T ss_dssp             EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEE
T ss_pred             EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            3467888888876  8999999999999999999432    456778899999999999999999999999999999999


Q ss_pred             CCc--eEEEEEEeCCCCcceeEEEEccC--CcEEEEEcCCCeEEEEEcCCC
Q psy11518         84 GSW--QLEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        84 ~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ..+  +....+ ..|... |.+++|+|+  +..+++++.|+.|++||++++
T Consensus       183 ~~~~~~~~~~~-~~h~~~-v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          183 YDDDWECVAVL-NGHEGT-VWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             ETTEEEEEEEE-CCCSSC-EEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             CCCCeeEEEEc-cCCCCc-EEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence            776  344444 455554 999999998  678999999999999998654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.92  E-value=6.5e-23  Score=136.47  Aligned_cols=123  Identities=22%  Similarity=0.409  Sum_probs=104.7

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCC------------------CeEEEEECCCCCEEEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEG------------------TITCLKFTPEGSHLIS   71 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~l~~   71 (139)
                      +|...|.++.|  ++++|++|+ ++.+++|++.+++.+..+..|..                  .|.+++|+|+++++++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            57777777776  899999987 68999999999988877765432                  3899999999999999


Q ss_pred             ecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         72 CSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        72 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++.|+.|++||+.+++....+ ..|... |.+++|+|+++++++++.|+.|++||+++++....+.
T Consensus       141 ~~~d~~i~iwd~~~~~~~~~~-~~h~~~-v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          141 GAEDRLIRIWDIENRKIVMIL-QGHEQD-IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             EETTSCEEEEETTTTEEEEEE-CCCSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EcCCCeEEEEECCCCcEEEEE-ccCCCC-EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            999999999999999888777 556555 9999999999999999999999999999988766543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.92  E-value=3.9e-24  Score=140.90  Aligned_cols=130  Identities=18%  Similarity=0.292  Sum_probs=111.1

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeC
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVG   84 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~   84 (139)
                      +...+|...|.++.|  ++++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++. ++++++.|+.|++||++
T Consensus       133 ~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~  212 (357)
T 4g56_B          133 FAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR  212 (357)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred             eccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence            344567888888877  899999999999999999999999999999999999999999864 78999999999999999


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCC-cEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSG-KLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +++....+........+.+++|+|++ .++++|+.|+.|++||+++++.+..+.
T Consensus       213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~  266 (357)
T 4g56_B          213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA  266 (357)
T ss_dssp             SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC
T ss_pred             CCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe
Confidence            88876665444444458999999974 688899999999999999988776553

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.92  E-value=1.2e-22  Score=133.00  Aligned_cols=120  Identities=21%  Similarity=0.292  Sum_probs=100.7

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ...+|...|.++.+  ++.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+...
T Consensus        71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~  150 (343)
T 2xzm_R           71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE  150 (343)
T ss_dssp             EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred             hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence            34577788888876  8899999999999999999999999999999999999999999999999999999999999844


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCC----------cEEEEEcCCCeEEEEEcC
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSG----------KLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~d~~i~i~d~~  128 (139)
                      ..........+...+.+++|+|++          .++++++.|+.|++||..
T Consensus       151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  202 (343)
T 2xzm_R          151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN  202 (343)
T ss_dssp             EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT
T ss_pred             ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC
Confidence            332222111233349999999987          789999999999999953

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.6e-23  Score=134.86  Aligned_cols=125  Identities=18%  Similarity=0.246  Sum_probs=113.5

Q ss_pred             eEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEE
Q psy11518          4 LTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIF   81 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~   81 (139)
                      ..+.+...+|...|.++.|  ++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++|
T Consensus        22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLW  101 (369)
T ss_dssp             SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEE
T ss_pred             ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence            4566777789999999887  89999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCc
Q psy11518         82 RVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGR  131 (139)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~  131 (139)
                      |+.+++....+.  +.. ++.+++|+|+++++++++.+     +.|.+||+++++
T Consensus       102 d~~~~~~~~~~~--~~~-~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B          102 DVSNGQCVATWK--SPV-PVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             ETTTCCEEEEEE--CSS-CEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             ECCCCcEEEEee--cCC-CeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence            999999888874  333 39999999999999999998     999999998764

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.92  E-value=6.6e-23  Score=134.10  Aligned_cols=120  Identities=21%  Similarity=0.342  Sum_probs=105.7

Q ss_pred             ceeeEEEEec--C----CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCC
Q psy11518         13 HTASVRSVAA--T----SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        13 ~~~~v~~~~~--~----~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +...+.++.|  +    +.++++|+.|+.|++||+.+++.+..+.+|...|.+++|+| +++++++++.|+.|++||+++
T Consensus        68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  147 (366)
T 3k26_A           68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT  147 (366)
T ss_dssp             TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred             CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence            5566777776  5    67999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             ceEEEEEE--eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         86 WQLEKLFK--KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        86 ~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      ++....+.  ..+.. .|.+++|+|+++++++++.|+.|++||+++++.+
T Consensus       148 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~  196 (366)
T 3k26_A          148 DTLVAIFGGVEGHRD-EVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM  196 (366)
T ss_dssp             TEEEEEECSTTSCSS-CEEEEEECTTSSEEEEEETTSCEEEEESCSHHHH
T ss_pred             CeEEEEecccccccC-ceeEEEECCCCCEEEEecCCCCEEEEECCCCccc
Confidence            98877763  23444 4999999999999999999999999999976543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.91  E-value=7.4e-23  Score=145.95  Aligned_cols=127  Identities=21%  Similarity=0.318  Sum_probs=112.3

Q ss_pred             CeeeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcE
Q psy11518          1 KYTLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSI   78 (139)
Q Consensus         1 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i   78 (139)
                      +++..+.+.  +|...|.+++|  +++++++++.+|.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|
T Consensus         2 ~l~~~~~~~--~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i   79 (814)
T 3mkq_A            2 KLDIKKTFS--NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (814)
T ss_dssp             CCCCEEEEE--EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             Ccccceeee--cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence            355667776  45556666655  99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         79 AIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ++||+.+++....+ ..|... |.+++|+|+++++++++.|+.|++||++++.
T Consensus        80 ~vw~~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~  130 (814)
T 3mkq_A           80 RVFNYNTGEKVVDF-EAHPDY-IRSIAVHPTKPYVLSGSDDLTVKLWNWENNW  130 (814)
T ss_dssp             EEEETTTCCEEEEE-ECCSSC-EEEEEECSSSSEEEEEETTSEEEEEEGGGTS
T ss_pred             EEEECCCCcEEEEE-ecCCCC-EEEEEEeCCCCEEEEEcCCCEEEEEECCCCc
Confidence            99999999988887 455555 9999999999999999999999999998873

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=4.9e-23  Score=135.25  Aligned_cols=122  Identities=21%  Similarity=0.369  Sum_probs=103.9

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEcc--CCceeeEEEecCCCeEEEEECCC--CCEEEEecCCCcEEEEEeC
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMV--KRKQSGALMQHEGTITCLKFTPE--GSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~~   84 (139)
                      .+|...|.++.|  ++++|++|+.|+.|++||+.  +.+.+..+.+|...|.+++|+++  ++++++++.|+.|++||+.
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~   87 (379)
T 3jrp_A            8 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE   87 (379)
T ss_dssp             EECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE
T ss_pred             cCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC
Confidence            467888888876  89999999999999999998  55677788899999999999976  8999999999999999999


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccC--CcEEEEEcCCCeEEEEEcCCCce
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +++.........+...|.+++|+|+  +.++++++.|+.|++||++++..
T Consensus        88 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~  137 (379)
T 3jrp_A           88 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT  137 (379)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC
T ss_pred             CCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc
Confidence            9874333323333344999999999  99999999999999999998743

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.91  E-value=5.6e-23  Score=141.87  Aligned_cols=112  Identities=29%  Similarity=0.504  Sum_probs=99.5

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      .+|...+.++.|  ++++|++++.|+.|++||. +++.+..+.+|...|++++|+|++++|++++.|+.|++||. +++.
T Consensus       464 ~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~  541 (577)
T 2ymu_A          464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQL  541 (577)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCE
T ss_pred             cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCE
Confidence            356667776665  9999999999999999994 78888999999999999999999999999999999999995 5677


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      +..+ ..|... |.+++|+||+++|++++.|+.|++||
T Consensus       542 ~~~~-~~h~~~-v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          542 LQTL-TGHSSS-VWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEEE-ECCSSC-EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEE-cCCCCC-EEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            7776 566655 99999999999999999999999997

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.91  E-value=3e-23  Score=138.40  Aligned_cols=117  Identities=26%  Similarity=0.309  Sum_probs=105.7

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCC
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG   98 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~   98 (139)
                      .+.+++++|++|+.|+.|++||+.+++....+.+|...|.+++|+|+++++++++.|+.|++||+.+++....+ ..|..
T Consensus       104 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~-~~h~~  182 (420)
T 3vl1_A          104 TAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTL-IGHRA  182 (420)
T ss_dssp             EECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEE-ECCSS
T ss_pred             EEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEE-cCCCC
Confidence            33458999999999999999999999888888899999999999999999999999999999999998887777 45555


Q ss_pred             cceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         99 TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      . |.+++|+|+++++++++.|+.|++||+++++.+..+.
T Consensus       183 ~-v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~  220 (420)
T 3vl1_A          183 T-VTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFN  220 (420)
T ss_dssp             C-EEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             c-EEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEee
Confidence            5 9999999999999999999999999999998887664

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.91  E-value=1.4e-22  Score=143.05  Aligned_cols=120  Identities=19%  Similarity=0.379  Sum_probs=105.9

Q ss_pred             EeecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCC-----ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEE
Q psy11518          9 VTHSHTASVRSVAA---TSKLAASSGADETVVLYDMVKR-----KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAI   80 (139)
Q Consensus         9 ~~~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   80 (139)
                      ...+|...|.++++   ++++|++|+.|+.|++|++.+.     .....+.+|...|.+++|+|+++++++|+.|+.|++
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v  456 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL  456 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence            34589999999987   4579999999999999998753     345678899999999999999999999999999999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ||+.++.....+ ..|... |.+++|+|+++++++++.|+.|++||+...
T Consensus       457 wd~~~~~~~~~~-~~h~~~-v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~  504 (694)
T 3dm0_A          457 WDLAAGVSTRRF-VGHTKD-VLSVAFSLDNRQIVSASRDRTIKLWNTLGE  504 (694)
T ss_dssp             EETTTTEEEEEE-ECCSSC-EEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred             EECCCCcceeEE-eCCCCC-EEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence            999999888877 566665 999999999999999999999999998654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.91  E-value=3.4e-23  Score=138.11  Aligned_cols=126  Identities=16%  Similarity=0.283  Sum_probs=109.1

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      .+|...|.++.|  ++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+++++.
T Consensus       136 ~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~  215 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTT  215 (420)
T ss_dssp             TSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEE
T ss_pred             ccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCce
Confidence            467888888887  889999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEEeC--CC--------------------CcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         89 EKLFKKA--HK--------------------GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        89 ~~~~~~~--~~--------------------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ...+...  +.                    ..++.+++|+|+++++++++.||.|++||+++++.+..+
T Consensus       216 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~  285 (420)
T 3vl1_A          216 IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL  285 (420)
T ss_dssp             EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc
Confidence            8877421  11                    122455667899999999999999999999998876654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.91  E-value=4.3e-22  Score=128.96  Aligned_cols=128  Identities=22%  Similarity=0.383  Sum_probs=110.6

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      +...+|...+.++.|  +++++++++.|+.|++||+.+++  ....+..|...+.+++|+|+++++++++.|+.|++||+
T Consensus        91 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~  170 (337)
T 1gxr_A           91 LDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDL  170 (337)
T ss_dssp             EECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeC
Confidence            333367777877776  88999999999999999998886  56677889999999999999999999999999999999


Q ss_pred             CCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++++....+ ..+... +.+++|+|+++++++++.|+.|++||+++++.+..+.
T Consensus       171 ~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~  222 (337)
T 1gxr_A          171 HNQTLVRQF-QGHTDG-ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD  222 (337)
T ss_dssp             TTTEEEEEE-CCCSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCCceeeee-ecccCc-eEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec
Confidence            999888877 445554 9999999999999999999999999999998876654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.91  E-value=1.8e-22  Score=131.02  Aligned_cols=124  Identities=18%  Similarity=0.299  Sum_probs=98.8

Q ss_pred             EeecceeeEEEEec----CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518          9 VTHSHTASVRSVAA----TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus         9 ~~~~~~~~v~~~~~----~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      ...+|...+.++.+    ...++++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||++
T Consensus       166 ~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~  245 (340)
T 4aow_A          166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN  245 (340)
T ss_dssp             CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence            34456666666665    45678999999999999999999999999999999999999999999999999999999987


Q ss_pred             CceEEEEEEe-----------------------------------------------CCCCcceeEEEEccCCcEEEEEc
Q psy11518         85 SWQLEKLFKK-----------------------------------------------AHKGTAVNHISIHPSGKLALSVG  117 (139)
Q Consensus        85 ~~~~~~~~~~-----------------------------------------------~~~~~~v~~~~~~~~~~~l~~~~  117 (139)
                      +.+.+..+..                                               ..+...|.+++|+|++++|++|+
T Consensus       246 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          246 EGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY  325 (340)
T ss_dssp             TTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred             cCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence            7554332210                                               01122388899999999999999


Q ss_pred             CCCeEEEEEcCCCce
Q psy11518        118 KDKTLRTWNLVKGRS  132 (139)
Q Consensus       118 ~d~~i~i~d~~~~~~  132 (139)
                      .||.|++||+++|++
T Consensus       326 ~Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          326 TDNLVRVWQVTIGTR  340 (340)
T ss_dssp             TTSCEEEEEEEC---
T ss_pred             CCCEEEEEeCCCcCC
Confidence            999999999998863

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.91  E-value=2.4e-22  Score=133.05  Aligned_cols=125  Identities=22%  Similarity=0.279  Sum_probs=109.6

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEe---c---CCCeEEEEECCCCCEEEEecCC---CcEE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQ---H---EGTITCLKFTPEGSHLISCSDD---GSIA   79 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---~~i~   79 (139)
                      ..|...+.++.+  ++ .+++++.|+.|++||+.+++.+..+..   |   ...|.+++|+|+++++++++.|   +.|+
T Consensus       183 ~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~  261 (397)
T 1sq9_A          183 MTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT  261 (397)
T ss_dssp             SSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred             cCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence            346666777766  77 999999999999999999999999998   8   9999999999999999999999   9999


Q ss_pred             EEEeCCceEEEEEEeC------------CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         80 IFRVGSWQLEKLFKKA------------HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        80 ~~d~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +||+++++....+...            +... |.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus       262 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          262 LYETEFGERIGSLSVPTHSSQASLGEFAHSSW-VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             EEETTTCCEEEEECBC--------CCBSBSSC-EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCcccceeccCcccccccccccccCCc-EEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            9999999888877321            4444 9999999999999999999999999999998887765

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.4e-22  Score=136.00  Aligned_cols=124  Identities=15%  Similarity=0.266  Sum_probs=107.4

Q ss_pred             ceeeEEEEe----cCCcEEEEeCCCCeEEEEEccCCceeeEEEe--cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         13 HTASVRSVA----ATSKLAASSGADETVVLYDMVKRKQSGALMQ--HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        13 ~~~~v~~~~----~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      +...+.++.    +++.++++++.|+.|++||+.+++.+..+..  |...|.+++|+|+++++++++.||.|++||++++
T Consensus       167 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~  246 (437)
T 3gre_A          167 KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN  246 (437)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT
T ss_pred             cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc
Confidence            445556655    2689999999999999999999999999988  8899999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCcceeEEEEc----cCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         87 QLEKLFKKAHKGTAVNHISIH----PSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +....+...+... |.+++|+    |++.++++++.|+.|++||+++++.+..+.
T Consensus       247 ~~~~~~~~~~~~~-v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  300 (437)
T 3gre_A          247 VLIRSWSFGDHAP-ITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFI  300 (437)
T ss_dssp             EEEEEEBCTTCEE-EEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred             cEEEEEecCCCCc-eEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence            9888875455554 9999665    468899999999999999999998776654

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.91  E-value=2.2e-22  Score=132.45  Aligned_cols=106  Identities=15%  Similarity=0.272  Sum_probs=91.7

Q ss_pred             cEEEE--eCCCCeEEEEEccCCc---------------e-eeEEEecCCCeEEEEECCCCCEEEEecCCCc-EEEEEeCC
Q psy11518         25 KLAAS--SGADETVVLYDMVKRK---------------Q-SGALMQHEGTITCLKFTPEGSHLISCSDDGS-IAIFRVGS   85 (139)
Q Consensus        25 ~~l~~--~~~~~~v~i~~~~~~~---------------~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~~~d~~~   85 (139)
                      ..++.  |+.+|.|++||+.+++               + +..+.+|...|.+++|+|++++|++++.|+. |++||+++
T Consensus       148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~  227 (355)
T 3vu4_A          148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTED  227 (355)
T ss_dssp             TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTT
T ss_pred             cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCC
Confidence            44554  6899999999998765               2 6788899999999999999999999999998 99999999


Q ss_pred             ceEEEEEEeC-CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         86 WQLEKLFKKA-HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        86 ~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ++.+..+... |... |.+++|+|++++|++++.|+.|++||++++.
T Consensus       228 ~~~~~~~~~g~h~~~-v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~  273 (355)
T 3vu4_A          228 GVLVREFRRGLDRAD-VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ  273 (355)
T ss_dssp             CCEEEEEECTTCCSC-EEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred             CcEEEEEEcCCCCCc-EEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence            9999888534 5544 9999999999999999999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.91  E-value=2.3e-22  Score=131.98  Aligned_cols=120  Identities=13%  Similarity=0.224  Sum_probs=105.2

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      |..+|.++.|  +++++++++.|+.|++||+.+++  .+..+.+|...|.+++|+|+++++++++.|+.|++||+.+++.
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   86 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence            5566666665  89999999999999999999887  8888999999999999999999999999999999999998886


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      ........+...+.+++|+|+++++++++.|+.|++||++.++.
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~  130 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND  130 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT
T ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCc
Confidence            66554343444599999999999999999999999999988763

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.90  E-value=3e-22  Score=132.62  Aligned_cols=118  Identities=21%  Similarity=0.286  Sum_probs=104.1

Q ss_pred             eeeEEEEec--CCcEEEEeCCC---CeEEEEEccCCceeeEEEe-------------cCCCeEEEEECCCCCEEEEecCC
Q psy11518         14 TASVRSVAA--TSKLAASSGAD---ETVVLYDMVKRKQSGALMQ-------------HEGTITCLKFTPEGSHLISCSDD   75 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l~~~~~~---~~v~i~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~l~~~~~d   75 (139)
                      ...+.++.|  ++.+|++++.|   +.|++||+.+++.+..+..             |...|.+++|+|+++++++++.|
T Consensus       233 ~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  312 (397)
T 1sq9_A          233 SNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD  312 (397)
T ss_dssp             CCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETT
T ss_pred             CCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCC
Confidence            667777776  89999999999   9999999999999999988             99999999999999999999999


Q ss_pred             CcEEEEEeCCceEEEEEEe-----CC--------------CCcceeEEEEccCC----------cEEEEEcCCCeEEEEE
Q psy11518         76 GSIAIFRVGSWQLEKLFKK-----AH--------------KGTAVNHISIHPSG----------KLALSVGKDKTLRTWN  126 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~-----~~--------------~~~~v~~~~~~~~~----------~~l~~~~~d~~i~i~d  126 (139)
                      +.|++||+++++....+..     .+              +..+|.+++|+|++          ++|++++.|+.|++||
T Consensus       313 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          313 GKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             SEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            9999999999998888841     33              03449999999998          7999999999999999


Q ss_pred             cCCCc
Q psy11518        127 LVKGR  131 (139)
Q Consensus       127 ~~~~~  131 (139)
                      +++++
T Consensus       393 ~~~g~  397 (397)
T 1sq9_A          393 EAGGK  397 (397)
T ss_dssp             EEC--
T ss_pred             cCCCC
Confidence            98874

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.90  E-value=9.8e-23  Score=137.11  Aligned_cols=119  Identities=13%  Similarity=0.160  Sum_probs=97.1

Q ss_pred             cceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCcee--eEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCC
Q psy11518         12 SHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQS--GALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        12 ~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +|...|+|++|   ++.+|++|+.||.|++||+.+++..  ..+.+|.+.|++++|+| ++++|++++.|+.|++||+++
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~  196 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG  196 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence            45667788877   5679999999999999999877544  34568999999999998 689999999999999999987


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ...............+.+++|+|+++++++|+.||.|++||++..
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~  241 (435)
T 4e54_B          197 NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK  241 (435)
T ss_dssp             CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC
T ss_pred             CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc
Confidence            655444422222333788999999999999999999999999753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.90  E-value=2.1e-22  Score=129.57  Aligned_cols=120  Identities=20%  Similarity=0.336  Sum_probs=100.7

Q ss_pred             eecceeeEEEEec----CCcEEEEeCCCCeEEEEEccCCc--eeeEEEecCCCeEEEEECCC--CCEEEEecCCCcEEEE
Q psy11518         10 THSHTASVRSVAA----TSKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPE--GSHLISCSDDGSIAIF   81 (139)
Q Consensus        10 ~~~~~~~v~~~~~----~~~~l~~~~~~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~   81 (139)
                      ..+|...|.++.|    ++++|++|+.|++|++||+.+++  .+..+..|...|.+++|+|+  +.++++++.|+.|++|
T Consensus        49 l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~w  128 (297)
T 2pm7_B           49 LTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVV  128 (297)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEE
T ss_pred             EccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEE
Confidence            3478888998887    27899999999999999998874  56677889999999999997  8899999999999999


Q ss_pred             EeCCceE--EEEEEeCCCCcceeEEEEccC-------------CcEEEEEcCCCeEEEEEcCCCc
Q psy11518         82 RVGSWQL--EKLFKKAHKGTAVNHISIHPS-------------GKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        82 d~~~~~~--~~~~~~~~~~~~v~~~~~~~~-------------~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      |+++...  ...+ ..|... |.+++|+|+             +++|++++.|+.|++||+++++
T Consensus       129 d~~~~~~~~~~~~-~~h~~~-v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          129 EFKENGTTSPIII-DAHAIG-VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             EBCSSSCBCCEEE-ECCSSC-EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred             EecCCCceeeeee-ecccCc-cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence            9987532  2222 455555 999999997             5799999999999999998765

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.90  E-value=3.1e-22  Score=133.26  Aligned_cols=122  Identities=19%  Similarity=0.284  Sum_probs=108.4

Q ss_pred             ecceeeEEEEec--CC-cEEEEeCCCCeEEEEEccCCceeeEE--EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         11 HSHTASVRSVAA--TS-KLAASSGADETVVLYDMVKRKQSGAL--MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~-~~l~~~~~~~~v~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      .+|...|.++.|  ++ .++++++.|+.|++||+.+++.+..+  ..|...|.+++|+|+++++++++.|+.|++||+++
T Consensus       128 ~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~  207 (402)
T 2aq5_A          128 EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK  207 (402)
T ss_dssp             ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT
T ss_pred             cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC
Confidence            367777888877  65 69999999999999999999999998  78999999999999999999999999999999999


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEE---cCCCeEEEEEcCCCce
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSV---GKDKTLRTWNLVKGRS  132 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~---~~d~~i~i~d~~~~~~  132 (139)
                      ++....+...+....+.+++|+|++++++++   +.|+.|++||+++++.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~  257 (402)
T 2aq5_A          208 GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE  257 (402)
T ss_dssp             TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred             CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC
Confidence            9988877455665558999999999999999   7999999999998654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.90  E-value=3.1e-22  Score=135.12  Aligned_cols=132  Identities=14%  Similarity=0.177  Sum_probs=112.5

Q ss_pred             eEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceee----EEEecCCCeEEEEECCC---CCEEEEecC
Q psy11518          4 LTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSG----ALMQHEGTITCLKFTPE---GSHLISCSD   74 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~----~~~~~~~~v~~~~~~~~---~~~l~~~~~   74 (139)
                      ..+.+..+.+...+.++.|  ++++|++|+.++.+.+|++.+++...    .+.+|...|.+++|+|+   ++++++++.
T Consensus       139 ~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~  218 (450)
T 2vdu_B          139 VLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR  218 (450)
T ss_dssp             CEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET
T ss_pred             eeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC
Confidence            3445554456677777776  89999999999999999998876544    77889999999999999   999999999


Q ss_pred             CCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         75 DGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        75 d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      |+.|++||++++.....+...|... |.+++|+ ++++|++++.|+.|++||+++++.+..+.
T Consensus       219 d~~i~vwd~~~~~~~~~~~~~h~~~-v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          219 DEHIKISHYPQCFIVDKWLFGHKHF-VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             TSCEEEEEESCTTCEEEECCCCSSC-EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEE
T ss_pred             CCcEEEEECCCCceeeeeecCCCCc-eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeec
Confidence            9999999999988777753456555 9999999 99999999999999999999999887764

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.90  E-value=6e-23  Score=134.31  Aligned_cols=120  Identities=10%  Similarity=0.094  Sum_probs=100.1

Q ss_pred             cceeeEEEEec----CCcEEEEeCCCCeEEEEEccCCceeeEEE-ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         12 SHTASVRSVAA----TSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        12 ~~~~~v~~~~~----~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      +|...|.++.+    +++++++++.|+.|++||+.+++...... .|...+.+++|+|++.++++|+.|+.|++||++++
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence            34456777765    67899999999999999999998876664 34557999999999999999999999999999998


Q ss_pred             eEE-EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         87 QLE-KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        87 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      +.. ..+...|... |.+++|+|++.+|++++++ .|++||+++++.+
T Consensus       203 ~~~~~~~~~~h~~~-v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~  248 (343)
T 3lrv_A          203 DQASSRFPVDEEAK-IKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGT  248 (343)
T ss_dssp             TSCCEECCCCTTSC-EEEEEECTTSSEEEEEESS-BEEEEETTSSTTC
T ss_pred             CCCccEEeccCCCC-EEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcc
Confidence            876 5563325554 9999999999999999955 9999999988764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.90  E-value=5.9e-22  Score=128.36  Aligned_cols=125  Identities=23%  Similarity=0.343  Sum_probs=101.0

Q ss_pred             eecceeeEEEEec--C--CcEEEEeCCCCeEEEEEccCCce---------------------------------------
Q psy11518         10 THSHTASVRSVAA--T--SKLAASSGADETVVLYDMVKRKQ---------------------------------------   46 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~--~~~l~~~~~~~~v~i~~~~~~~~---------------------------------------   46 (139)
                      ..+|...+.++.|  +  +.++++++.|+.|++||+.+++.                                       
T Consensus       106 ~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l  185 (351)
T 3f3f_A          106 LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKL  185 (351)
T ss_dssp             ECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEE
T ss_pred             ecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEE
Confidence            3467777888877  5  88999999999999999865431                                       


Q ss_pred             ---------------------eeEEEecCCCeEEEEECCCC----CEEEEecCCCcEEEEEeCCc---------------
Q psy11518         47 ---------------------SGALMQHEGTITCLKFTPEG----SHLISCSDDGSIAIFRVGSW---------------   86 (139)
Q Consensus        47 ---------------------~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d~~i~~~d~~~~---------------   86 (139)
                                           +..+.+|...|.+++|+|++    +++++++.||.|++||++.+               
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  265 (351)
T 3f3f_A          186 AVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNM  265 (351)
T ss_dssp             EEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------
T ss_pred             EEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceec
Confidence                                 23344688999999999998    79999999999999999764               


Q ss_pred             -------------------------------eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         87 -------------------------------QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        87 -------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                                                     +....+ ..|... |.+++|+|++++|++++.||.|++||+.+++....
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~-v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~  343 (351)
T 3f3f_A          266 FDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHNGE-VWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKC  343 (351)
T ss_dssp             -------------------------CCSEEEEEEEEE-CTTSSC-EEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEE
T ss_pred             cCCCcccccccccccccccceeeeecccccccEEEEE-eccccc-EEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhh
Confidence                                           233333 344444 99999999999999999999999999999876654


Q ss_pred             E
Q psy11518        136 T  136 (139)
Q Consensus       136 ~  136 (139)
                      +
T Consensus       344 ~  344 (351)
T 3f3f_A          344 M  344 (351)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.90  E-value=6.5e-22  Score=139.70  Aligned_cols=127  Identities=19%  Similarity=0.293  Sum_probs=107.0

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ...+|...|.++.+  ++++|++|+.|+.|++||+.+++....+.+|...|.+++|+|+++++++++.|+.|++||....
T Consensus       425 ~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~  504 (694)
T 3dm0_A          425 RLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE  504 (694)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred             eecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence            34467777777776  8999999999999999999999999999999999999999999999999999999999998655


Q ss_pred             eEEEEEE--eCCCCcceeEEEEccCC--cEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         87 QLEKLFK--KAHKGTAVNHISIHPSG--KLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        87 ~~~~~~~--~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .......  ..|.. .|.+++|+|++  ..+++++.|+.|++||+++++....+
T Consensus       505 ~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~  557 (694)
T 3dm0_A          505 CKYTISEGGEGHRD-WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL  557 (694)
T ss_dssp             EEEEECSSTTSCSS-CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             cceeeccCCCCCCC-cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE
Confidence            4433321  12333 39999999987  58999999999999999988776554

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7.1e-22  Score=131.34  Aligned_cols=129  Identities=13%  Similarity=0.281  Sum_probs=103.8

Q ss_pred             EEEEeecceeeEEEEec--CCc-EEEEeCCCCeEEEEEc----cCCc------eeeEEEe----------cCCCeEEEEE
Q psy11518          6 QTFVTHSHTASVRSVAA--TSK-LAASSGADETVVLYDM----VKRK------QSGALMQ----------HEGTITCLKF   62 (139)
Q Consensus         6 ~~~~~~~~~~~v~~~~~--~~~-~l~~~~~~~~v~i~~~----~~~~------~~~~~~~----------~~~~v~~~~~   62 (139)
                      +.+..+.|...|.++.|  +++ +|++|+.|+.|++|++    .+++      ....+..          |...|.+++|
T Consensus        37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  116 (425)
T 1r5m_A           37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAW  116 (425)
T ss_dssp             EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEE
T ss_pred             hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEE
Confidence            44555566677777776  788 9999999999999999    8887      4555544          6779999999


Q ss_pred             CCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         63 TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        63 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +|++++|++++.|+.|++|| .++.....+ ..|... |.+++|+|+++++++++.|+.|++||+++++.+..+.
T Consensus       117 s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          117 SHDGNSIVTGVENGELRLWN-KTGALLNVL-NFHRAP-IVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             CTTSSEEEEEETTSCEEEEE-TTSCEEEEE-CCCCSC-EEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             cCCCCEEEEEeCCCeEEEEe-CCCCeeeec-cCCCcc-EEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            99999999999999999999 566666666 445544 9999999999999999999999999999998877654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.90  E-value=1.1e-21  Score=129.72  Aligned_cols=119  Identities=13%  Similarity=0.183  Sum_probs=103.0

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeCC----
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGS----   85 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~----   85 (139)
                      +...+.++.+  +++++++++.|+.|++||+ +++++..+..|...|.+++|+|+++ ++++++.|+.|++||+++    
T Consensus       162 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~  240 (383)
T 3ei3_B          162 WDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK  240 (383)
T ss_dssp             SSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST
T ss_pred             CCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc
Confidence            3455666665  8999999999999999998 6778889999999999999999998 899999999999999987    


Q ss_pred             ceEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      +.....+  .+... +.+++|+| +++++++++.|+.|++||+++++.+..
T Consensus       241 ~~~~~~~--~~~~~-v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  288 (383)
T 3ei3_B          241 NSYIAEM--PHEKP-VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQ  288 (383)
T ss_dssp             TCEEEEE--ECSSC-EEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSE
T ss_pred             cceEEEe--cCCCc-eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccc
Confidence            5566655  34444 99999999 999999999999999999998776544

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.90  E-value=9.2e-22  Score=132.89  Aligned_cols=122  Identities=24%  Similarity=0.399  Sum_probs=107.6

Q ss_pred             Eeecceee-EEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518          9 VTHSHTAS-VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus         9 ~~~~~~~~-v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ...+|... +.++.++++++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++ .+++++.||.|++||+++++
T Consensus       116 ~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~  194 (464)
T 3v7d_B          116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC  194 (464)
T ss_dssp             EEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE
T ss_pred             EEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc
Confidence            34467665 56788899999999999999999999999999999999999999999987 89999999999999999999


Q ss_pred             EEEEEEeCCCCcceeEEEEc--cCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         88 LEKLFKKAHKGTAVNHISIH--PSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      ....+ ..|... |.+++|+  ++++++++++.|+.|++||+++++..
T Consensus       195 ~~~~~-~~h~~~-v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~  240 (464)
T 3v7d_B          195 CTHVF-EGHNST-VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV  240 (464)
T ss_dssp             EEEEE-CCCSSC-EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred             EEEEE-CCCCCc-cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence            88877 455555 9999998  57899999999999999999987654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.90  E-value=1.3e-21  Score=126.67  Aligned_cols=130  Identities=18%  Similarity=0.281  Sum_probs=104.0

Q ss_pred             EEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCce---eeEEE--ecCCCeEEEEECCCCCEEEEecCCCcEE
Q psy11518          7 TFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQ---SGALM--QHEGTITCLKFTPEGSHLISCSDDGSIA   79 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~---~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (139)
                      .+...+|...+.++.+  +++++++++ |+.|++||+.+++.   ...+.  .|...|.+++|+|+++++++++.|+.|+
T Consensus        44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  122 (337)
T 1gxr_A           44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence            3344467777877776  899999999 99999999987653   33444  6889999999999999999999999999


Q ss_pred             EEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         80 IFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +||+.+++.........+...+.+++|+|+++++++++.|+.|++||+++++.+..+.
T Consensus       123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~  180 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ  180 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeee
Confidence            9999987743332223333349999999999999999999999999999988776553

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.90  E-value=1e-21  Score=145.49  Aligned_cols=127  Identities=22%  Similarity=0.356  Sum_probs=113.7

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +...+|...|.++.|  +++++++|+.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            345578888888776  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEEEeCCCCcceeEEEEcc--CCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHP--SGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ++....+ ..|... |.+++|+|  ++.++++++.|+.|++||+++++.+..+
T Consensus       689 ~~~~~~~-~~~~~~-v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~  739 (1249)
T 3sfz_A          689 GKLVHTY-DEHSEQ-VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM  739 (1249)
T ss_dssp             CCEEEEE-ECCSSC-EEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEE
T ss_pred             CceEEEE-cCCCCc-EEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhhee
Confidence            9988887 455555 99999999  5568999999999999999999877654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1e-22  Score=140.00  Aligned_cols=126  Identities=11%  Similarity=0.042  Sum_probs=103.0

Q ss_pred             eecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCC-ceeeEEEecCCCeEEE--EECCCC-CEEEEecCCCcEEEEEeC
Q psy11518         10 THSHTASVRSVAA-TSKLAASSGADETVVLYDMVKR-KQSGALMQHEGTITCL--KFTPEG-SHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        10 ~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~d~~i~~~d~~   84 (139)
                      ..+|...|.++.| .+..|++|+.||+|++||+.++ .+...+.+|...|.++  .|+|++ .+|++++.|+.|++||++
T Consensus       262 l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~  341 (524)
T 2j04_B          262 LSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPK  341 (524)
T ss_dssp             ECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGG
T ss_pred             EEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECC
Confidence            3467788999998 5568999999999999999876 4456688999999999  568887 899999999999999998


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      +++....+........+.+++|+|+++.+++++.|+.|++||++++..+..
T Consensus       342 ~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~  392 (524)
T 2j04_B          342 DIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHP  392 (524)
T ss_dssp             GHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEE
T ss_pred             CCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccccccee
Confidence            876554442112222378899999999999999999999999999876443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-21  Score=126.09  Aligned_cols=119  Identities=22%  Similarity=0.349  Sum_probs=102.7

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      +...+.++.+  ++. +++++.|+.|++||+.+++.+..+..|...|.+++|+|++ .+++++.|+.|++||+.+++...
T Consensus       183 ~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~  260 (313)
T 3odt_A          183 HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ  260 (313)
T ss_dssp             CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEE
T ss_pred             CcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeE
Confidence            5666777776  666 9999999999999999999999999999999999999998 68899999999999999999888


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .+ ..+... +.+++|+|+++ +++++.|+.|++||+++++.+...
T Consensus       261 ~~-~~~~~~-i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~  303 (313)
T 3odt_A          261 VI-TLPAIS-IWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED  303 (313)
T ss_dssp             EE-ECSSSC-EEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred             EE-eccCce-EEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence            87 444444 99999999998 667899999999999988766543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.90  E-value=1.1e-21  Score=129.72  Aligned_cols=125  Identities=14%  Similarity=0.150  Sum_probs=102.4

Q ss_pred             ecceeeEEEEec--CC-cEEEEeCCCCeEEEEEccCCceeeEEE--ecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeC
Q psy11518         11 HSHTASVRSVAA--TS-KLAASSGADETVVLYDMVKRKQSGALM--QHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~-~~l~~~~~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~   84 (139)
                      .+|...|.++.|  ++ +++++|+.|+.|++||+.+++....+.  +|...|.+++|+| +++++++++.|+.|++||++
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence            467788888887  66 899999999999999999888777765  6999999999999 78999999999999999998


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ................+.+++|+|+++++++++.|+.|++||++ ++.+..+
T Consensus       150 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~  200 (383)
T 3ei3_B          150 GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKE  200 (383)
T ss_dssp             SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEE
T ss_pred             CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEe
Confidence            64433333222223449999999999999999999999999994 5555443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.89  E-value=6.9e-23  Score=135.03  Aligned_cols=122  Identities=15%  Similarity=0.132  Sum_probs=99.7

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc---eeeEEEe-cCCCeEEEEECCCCCEEEEecCCCcEEEE
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRK---QSGALMQ-HEGTITCLKFTPEGSHLISCSDDGSIAIF   81 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~   81 (139)
                      ....+|...+.++.|  ++++|++++.|+.|++||+.+++   ....+.. |...|.+++|+|+++++++++.|+.|++|
T Consensus        94 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iw  173 (377)
T 3dwl_C           94 LVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVL  173 (377)
T ss_dssp             EECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEE
T ss_pred             eEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Confidence            344567788888887  88999999999999999998886   3677777 99999999999999999999999999999


Q ss_pred             EeCC------------------ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         82 RVGS------------------WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        82 d~~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      |+..                  ++....+  .|... |.+++|+|+++++++++.|+.|++||+++++.
T Consensus       174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          174 SAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGW-VHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             EECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSS-EEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             EEEecccCCCccccccccccchhhhhhcc--cCCce-EEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            9852                  3333333  44444 99999999999999999999999999998876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.89  E-value=1.2e-21  Score=128.04  Aligned_cols=131  Identities=22%  Similarity=0.308  Sum_probs=108.3

Q ss_pred             eeEEEEEeecceeeEEEEecC------CcEEEEeCCCCeEEEEEccCCceeeEEEe-----cCCCeEEEEECCC----CC
Q psy11518          3 TLTQTFVTHSHTASVRSVAAT------SKLAASSGADETVVLYDMVKRKQSGALMQ-----HEGTITCLKFTPE----GS   67 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~~------~~~l~~~~~~~~v~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~----~~   67 (139)
                      +..+.+. .+|...|.++.|.      ...+++++.++.|++||+.+++.+..+..     |...|.+++|+|+    ++
T Consensus         8 ~~~~~~~-~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   86 (366)
T 3k26_A            8 KCVNSLK-EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP   86 (366)
T ss_dssp             EEEEEEE-CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE
T ss_pred             EEEEEee-cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC
Confidence            3333433 3788999998884      45677777778999999998877776664     4577999999998    67


Q ss_pred             EEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         68 HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        68 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ++++++.||.|++||+.+++....+ ..|... |.+++|+| +++++++++.|+.|++||+++++.+..+
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  154 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQCIKHY-VGHGNA-INELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIF  154 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCCEEEEE-ESCCSC-EEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEEEecCCCEEEEEEchhceEeeee-cCCCCc-EEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEe
Confidence            9999999999999999999988887 455555 99999999 9999999999999999999998887665

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.89  E-value=2.9e-21  Score=128.70  Aligned_cols=125  Identities=21%  Similarity=0.295  Sum_probs=109.0

Q ss_pred             ecceeeEEEEecCCcEEEEeCCCCeEEEEEcc-CCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         11 HSHTASVRSVAATSKLAASSGADETVVLYDMV-KRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        11 ~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      .+|...+.++.|+++.+++++.|+.|++||+. ....+..+.+|...|.+++|+|+++++++++.|+.|++||++++...
T Consensus       173 ~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~  252 (401)
T 4aez_A          173 AGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK  252 (401)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEE
T ss_pred             cCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCcc
Confidence            37888999999999999999999999999998 46677888999999999999999999999999999999999998888


Q ss_pred             EEEEeCCCCcceeEEEEccCCc-EEEEEc--CCCeEEEEEcCCCceeEEEe
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGK-LALSVG--KDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~--~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ..+ ..+... |.+++|+|++. ++++++  .|+.|++||+++++.+..+.
T Consensus       253 ~~~-~~~~~~-v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~  301 (401)
T 4aez_A          253 FTK-TNHNAA-VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD  301 (401)
T ss_dssp             EEE-CCCSSC-CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE
T ss_pred             EEe-cCCcce-EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe
Confidence            777 445544 99999999765 556654  79999999999998877654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.89  E-value=4.1e-21  Score=124.70  Aligned_cols=122  Identities=19%  Similarity=0.352  Sum_probs=104.6

Q ss_pred             eecceeeEEEEec--C-CcEEEEeCCCCeEEEEEccCCc-----eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEE
Q psy11518         10 THSHTASVRSVAA--T-SKLAASSGADETVVLYDMVKRK-----QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIF   81 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~-~~~l~~~~~~~~v~i~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~   81 (139)
                      +.+|...|.+++|  + +++|++|+.|++|++||+.+.+     +...+.+|...|.+++|+|+++++++++.|+.|++|
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~  113 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLW  113 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEE
Confidence            4589999999987  3 6799999999999999987653     456778899999999999999999999999999999


Q ss_pred             EeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         82 RVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      +.......... ..+... +....++++++++++++.|+.+++||+......
T Consensus       114 ~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~  163 (340)
T 4aow_A          114 DLTTGTTTRRF-VGHTKD-VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY  163 (340)
T ss_dssp             ETTTTEEEEEE-ECCSSC-EEEEEECTTSSCEEEEETTSCEEEECTTSCEEE
T ss_pred             eecccceeeee-cCCCCc-eeEEEEeecCccceeecCCCeEEEEEeCCCceE
Confidence            99988877766 334443 788999999999999999999999999765443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.89  E-value=4.8e-23  Score=135.80  Aligned_cols=116  Identities=12%  Similarity=0.233  Sum_probs=92.1

Q ss_pred             eeeEEEEe--cCCcEEEEeCCCCeEEEEEccCC--ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce--
Q psy11518         14 TASVRSVA--ATSKLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ--   87 (139)
Q Consensus        14 ~~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~--   87 (139)
                      ..+|.++.  +++++|++|+.|+.|++||+.++  +.+..+.+|...|.+++|+|++++|++++.|+.|++||+.++.  
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~   90 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW   90 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence            34455555  48999999999999999999988  7788889999999999999999999999999999999998876  


Q ss_pred             -EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         88 -LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        88 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                       ....+ ..|... |.+++|+|+++++++++.|+.|++||+++++
T Consensus        91 ~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  133 (377)
T 3dwl_C           91 KQTLVL-LRLNRA-ATFVRWSPNEDKFAVGSGARVISVCYFEQEN  133 (377)
T ss_dssp             CCEEEC-CCCSSC-EEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred             eeeeEe-cccCCc-eEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence             33333 344444 9999999999999999999999999999876

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.89  E-value=2.8e-21  Score=130.56  Aligned_cols=123  Identities=24%  Similarity=0.343  Sum_probs=111.2

Q ss_pred             eecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         10 THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        10 ~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ..+|...+.++.++++++++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||+++++..
T Consensus       266 ~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          266 LRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             ECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence            44678889999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..+ ..|... |.+++|+  +.++++++.||.|++||+++++.....
T Consensus       346 ~~~-~~h~~~-v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~  388 (464)
T 3v7d_B          346 YTL-QGHTAL-VGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY  388 (464)
T ss_dssp             EEE-CCCSSC-EEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EEE-eCCCCc-EEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee
Confidence            887 455555 9999997  589999999999999999998766554

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.1e-21  Score=127.47  Aligned_cols=123  Identities=20%  Similarity=0.319  Sum_probs=103.9

Q ss_pred             EeecceeeEEEEec--C--CcEEEEeCCCCeEEEEEccCCc--eeeEEEecCCCeEEEEECCC--CCEEEEecCCCcEEE
Q psy11518          9 VTHSHTASVRSVAA--T--SKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPE--GSHLISCSDDGSIAI   80 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~--~~~l~~~~~~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~   80 (139)
                      ...+|...|.++.|  +  +.+|++++.|+.|++||+.+++  .+..+..|...|.+++|+|+  +.++++++.|+.|++
T Consensus        50 ~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v  129 (379)
T 3jrp_A           50 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  129 (379)
T ss_dssp             EECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             EecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence            34468888888887  3  8999999999999999999987  67778889999999999998  999999999999999


Q ss_pred             EEeCCceEEEEEE-eCCCCcceeEEEEcc-------------CCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         81 FRVGSWQLEKLFK-KAHKGTAVNHISIHP-------------SGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        81 ~d~~~~~~~~~~~-~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      ||++......... ..+... |.+++|+|             ++.++++++.|+.|++||+++++.
T Consensus       130 ~d~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  194 (379)
T 3jrp_A          130 VEFKENGTTSPIIIDAHAIG-VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ  194 (379)
T ss_dssp             EECCTTSCCCEEEEECCTTC-EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred             EecCCCCceeeEEecCCCCc-eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence            9998874322222 344444 99999999             699999999999999999987754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.89  E-value=3.5e-21  Score=126.35  Aligned_cols=129  Identities=17%  Similarity=0.100  Sum_probs=106.8

Q ss_pred             EEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCce---eeEE-EecCCCeEEEEECCCCCEEEEecCCCcEEE
Q psy11518          7 TFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQ---SGAL-MQHEGTITCLKFTPEGSHLISCSDDGSIAI   80 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~---~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   80 (139)
                      .+...+|...+.++.|  +++++++++.|+.|++||+..+..   ...+ ..|...|.+++|+|+++++++++.|+.|++
T Consensus        89 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~  168 (372)
T 1k8k_C           89 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRI  168 (372)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEE
Confidence            4444567777887776  899999999999999999988763   2233 467889999999999999999999999999


Q ss_pred             EEeC------------------CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         81 FRVG------------------SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        81 ~d~~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ||++                  .+.....+ ..+... +.+++|+|+++++++++.|+.|++||+++++.+..+.
T Consensus       169 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  241 (372)
T 1k8k_C          169 FSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGW-VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA  241 (372)
T ss_dssp             EECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSC-EEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred             EEcccccccccccccccccccchhhheEec-CCCCCe-EEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc
Confidence            9953                  56666666 344444 9999999999999999999999999999998876654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=7.9e-22  Score=140.54  Aligned_cols=122  Identities=21%  Similarity=0.366  Sum_probs=103.4

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEcc--CCceeeEEEecCCCeEEEEECCC--CCEEEEecCCCcEEEEEe
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMV--KRKQSGALMQHEGTITCLKFTPE--GSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~~d~   83 (139)
                      ..+|...|.++.|  +++++++|+.||.|++||+.  +++.+..+.+|...|.+++|+|+  ++++++++.||.|++||+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~   84 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   84 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence            3578899999987  89999999999999999998  45677888899999999999987  999999999999999999


Q ss_pred             CCceEEEEEEeCCCCcceeEEEEccC--CcEEEEEcCCCeEEEEEcCCCc
Q psy11518         84 GSWQLEKLFKKAHKGTAVNHISIHPS--GKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      .++..........+..+|.+++|+|+  ++.+++++.||.|++||++++.
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence            98874333323333344999999999  9999999999999999998874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.89  E-value=1.1e-21  Score=142.10  Aligned_cols=122  Identities=16%  Similarity=0.144  Sum_probs=101.5

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc--------------------------------------------
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRK--------------------------------------------   45 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~--------------------------------------------   45 (139)
                      +|...|.+++|  ++++||+|+.|++|++|++.+++                                            
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            56667777776  99999999999999999997662                                            


Q ss_pred             -eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe-----CCCCcceeEEEEc-----cCC---c
Q psy11518         46 -QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK-----AHKGTAVNHISIH-----PSG---K  111 (139)
Q Consensus        46 -~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~v~~~~~~-----~~~---~  111 (139)
                       ++..+.+|.+.|++++|+|+| +||+|+.|+.|++||+++...+.....     .|.. .|++++|+     |||   +
T Consensus       566 ~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~-~V~sv~Fs~~~~~~Dg~~~~  643 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA-CVTCIEFVIMEYGDDGYSSI  643 (902)
T ss_dssp             EEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC-CEEEEEEEEEECTTSSSEEE
T ss_pred             ceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhcccccc-ceEEEEEEEEecCCCCCcce
Confidence             356778899999999999999 999999999999999988776543221     3333 49999999     885   8


Q ss_pred             EEEEEcCCCeEEEEEc---CCCceeEE
Q psy11518        112 LALSVGKDKTLRTWNL---VKGRSAYI  135 (139)
Q Consensus       112 ~l~~~~~d~~i~i~d~---~~~~~~~~  135 (139)
                      +|++|+.|+.|++||+   .+|+....
T Consensus       644 ~l~sgs~D~tv~~wd~~p~~~g~~~~~  670 (902)
T 2oaj_A          644 LMVCGTDMGEVITYKILPASGGKFDVQ  670 (902)
T ss_dssp             EEEEEETTSEEEEEEEEECGGGCEEEE
T ss_pred             EEEEEecCCcEEEEEEecCCCCcEEEE
Confidence            9999999999999999   67665543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.89  E-value=6e-22  Score=137.25  Aligned_cols=118  Identities=22%  Similarity=0.351  Sum_probs=103.9

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEe-cCCCeEEEEECC----------CCCEEEEecCC
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQ-HEGTITCLKFTP----------EGSHLISCSDD   75 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~----------~~~~l~~~~~d   75 (139)
                      ...+|...+.++.+  ++++|++++.|+.|++||+.+++.+..+.+ |...|++++|+|          ++++|++++.|
T Consensus       483 ~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~d  562 (615)
T 1pgu_A          483 LKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLD  562 (615)
T ss_dssp             CSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETT
T ss_pred             ccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCC
Confidence            34456777877776  999999999999999999999999888887 999999999999          99999999999


Q ss_pred             CcEEEEEeCCc-eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         76 GSIAIFRVGSW-QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        76 ~~i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      +.|++||+.++ +....+ ..|... |.+++|+|+++ |++++.|+.|++||+..
T Consensus       563 g~i~iw~~~~~~~~~~~~-~~h~~~-v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          563 TNIFIYSVKRPMKIIKAL-NAHKDG-VNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             SCEEEEESSCTTCCEEET-TSSTTC-EEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             CcEEEEECCCCceechhh-hcCccc-eEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            99999999987 566555 455554 99999999999 99999999999999975

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.89  E-value=4.7e-21  Score=141.93  Aligned_cols=126  Identities=23%  Similarity=0.339  Sum_probs=112.3

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECC--CCCEEEEecCCCcEEEEEeCC
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP--EGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ..+|...|.++.|  +++++++++.|+.|++||+.+++.+..+.+|...|.+++|+|  ++.++++++.|+.|++||+.+
T Consensus       653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~  732 (1249)
T 3sfz_A          653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ  732 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS
T ss_pred             eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC
Confidence            3467778888777  899999999999999999999999999999999999999999  566899999999999999999


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +.....+ ..|... |.+++|+|+++++++++.||.|++||+++++....+.
T Consensus       733 ~~~~~~~-~~h~~~-v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~  782 (1249)
T 3sfz_A          733 KECRNTM-FGHTNS-VNHCRFSPDDELLASCSADGTLRLWDVRSANERKSIN  782 (1249)
T ss_dssp             SSEEEEE-CCCSSC-EEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred             cchhhee-cCCCCC-EEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceec
Confidence            9988877 455555 9999999999999999999999999999987766543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.89  E-value=8e-21  Score=126.55  Aligned_cols=120  Identities=18%  Similarity=0.271  Sum_probs=105.6

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC-ceEE
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS-WQLE   89 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-~~~~   89 (139)
                      |...|.++.|  ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|  +++++++++.|+.|++||++. ....
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  210 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQI  210 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCccee
Confidence            6677888777  8999999999999999999999999999999999999999  567999999999999999984 4445


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..+ ..|... |.+++|+|+++++++++.|+.|++||+++++.+..+
T Consensus       211 ~~~-~~~~~~-v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~  255 (401)
T 4aez_A          211 GTL-QGHSSE-VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK  255 (401)
T ss_dssp             EEE-ECCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEE
T ss_pred             eEE-cCCCCC-eeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEe
Confidence            555 556655 999999999999999999999999999998877654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.89  E-value=5e-22  Score=133.29  Aligned_cols=132  Identities=12%  Similarity=0.114  Sum_probs=109.1

Q ss_pred             eEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE-ecCCCeEEEEECC----CCCEEEEecCCC
Q psy11518          4 LTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTP----EGSHLISCSDDG   76 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~----~~~~l~~~~~d~   76 (139)
                      .+..+....|...|.++.+  ++++|++|+.|+.|++||+.+++++..+. .|...|.+++|+|    ++.++++++.|+
T Consensus       204 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg  283 (437)
T 3gre_A          204 RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKT  283 (437)
T ss_dssp             EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTE
T ss_pred             eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCC
Confidence            4455554447778888877  89999999999999999999999888886 7788999996665    577999999999


Q ss_pred             cEEEEEeCCceEEEEEEeCC------------------------CCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         77 SIAIFRVGSWQLEKLFKKAH------------------------KGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~~~~------------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      .|++||+++++....+....                        +...|.+++|+ ++++|++++.|+.|++||+++++.
T Consensus       284 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          284 FLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             EEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             cEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence            99999999998887774211                        23348899999 789999999999999999999887


Q ss_pred             eEEE
Q psy11518        133 AYIT  136 (139)
Q Consensus       133 ~~~~  136 (139)
                      ...+
T Consensus       363 ~~~~  366 (437)
T 3gre_A          363 SKAV  366 (437)
T ss_dssp             CEEE
T ss_pred             ceEE
Confidence            6654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.88  E-value=5.7e-21  Score=136.29  Aligned_cols=123  Identities=17%  Similarity=0.260  Sum_probs=107.7

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc-eE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW-QL   88 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~   88 (139)
                      +|..+|.++.|  ++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|++||+.++ ..
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~  132 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL  132 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEE
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceE
Confidence            56667777766  8999999999999999999999999999999999999999999999999999999999999887 44


Q ss_pred             EEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ...+ ..|... +.+++|+| ++..+++++.|+.|++||+++++....+
T Consensus       133 ~~~~-~~~~~~-v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~  179 (814)
T 3mkq_A          133 EQTF-EGHEHF-VMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL  179 (814)
T ss_dssp             EEEE-ECCSSC-EEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE
T ss_pred             EEEE-cCCCCc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE
Confidence            4444 455555 99999999 8899999999999999999887765544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.88  E-value=2.1e-21  Score=130.96  Aligned_cols=117  Identities=19%  Similarity=0.208  Sum_probs=95.8

Q ss_pred             eeeEEEEec--CCcEEE----EeCCCCeEEEEEccCC--------ce---eeEEEecCCCeEEEEECCC-CCEEEEecCC
Q psy11518         14 TASVRSVAA--TSKLAA----SSGADETVVLYDMVKR--------KQ---SGALMQHEGTITCLKFTPE-GSHLISCSDD   75 (139)
Q Consensus        14 ~~~v~~~~~--~~~~l~----~~~~~~~v~i~~~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d   75 (139)
                      ...+.+++|  ++++|+    +|+.|+.|++||+.+.        ++   +..+.+|...|.+++|+|+ +.++++++.|
T Consensus        92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~D  171 (434)
T 2oit_A           92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLAD  171 (434)
T ss_dssp             SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETT
T ss_pred             CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECC
Confidence            345777776  889998    7889999999998764        22   3445568999999999997 8899999999


Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      |.|++||++++...... ..|.. .+.+++|+|+|++|++|+.||.|++||++ ++..
T Consensus       172 g~v~iwD~~~~~~~~~~-~~~~~-~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~  226 (434)
T 2oit_A          172 GSIAVLQVTETVKVCAT-LPSTV-AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEK  226 (434)
T ss_dssp             SCEEEEEESSSEEEEEE-ECGGG-CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEE
T ss_pred             CeEEEEEcCCCcceeec-cCCCC-ceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cccc
Confidence            99999999988655443 34444 49999999999999999999999999998 4443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.2e-22  Score=138.37  Aligned_cols=118  Identities=12%  Similarity=0.115  Sum_probs=101.5

Q ss_pred             eecceeeEEEE--ec--CC-cEEEEeCCCCeEEEEEccCCceeeEEEecCC--CeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518         10 THSHTASVRSV--AA--TS-KLAASSGADETVVLYDMVKRKQSGALMQHEG--TITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus        10 ~~~~~~~v~~~--~~--~~-~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      ..+|...|.++  .+  ++ .+|++|+.|++|++||+.+++.+..+.+|..  .|.+++|+|+++.+++++.|+.|++||
T Consensus       304 ~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd  383 (524)
T 2j04_B          304 DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVP  383 (524)
T ss_dssp             EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEE
T ss_pred             eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEE
Confidence            34688888888  44  56 7999999999999999999888888877753  478999999999999999999999999


Q ss_pred             eCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         83 VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ++++.....+ ..|... |.+++|+|++++|++|+.|+.|++||+..
T Consensus       384 ~~~~~~~~~l-~gH~~~-V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~  428 (524)
T 2j04_B          384 SRAAFAVHPL-VSRETT-ITAIGVSRLHPMVLAGSADGSLIITNAAR  428 (524)
T ss_dssp             TTCTTCCEEE-EECSSC-EEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred             Ccccccceee-ecCCCc-eEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence            9988776666 356655 99999999999999999999999999754

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.88  E-value=2.9e-21  Score=127.08  Aligned_cols=122  Identities=19%  Similarity=0.263  Sum_probs=99.5

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCe-EEEEEccCCceeeEEE-e-cCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADET-VVLYDMVKRKQSGALM-Q-HEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~-v~i~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      ..+|...|.++.|  ++++|++|+.|++ |++||+.+++.+..+. + |...|.+++|+|++++|++++.|+.|++||++
T Consensus       191 ~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          191 IKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             EEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            4467788888776  8999999999998 9999999999999998 5 99999999999999999999999999999997


Q ss_pred             CceEEE--E------------------EE-eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         85 SWQLEK--L------------------FK-KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        85 ~~~~~~--~------------------~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ......  .                  +. ......+...++|+++++.+++++.||.+++|++..++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~  338 (355)
T 3vu4_A          271 NDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD  338 (355)
T ss_dssp             CCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred             CCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence            643111  0                  00 01111124679999999999999999999999986543

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.88  E-value=2.7e-22  Score=133.60  Aligned_cols=110  Identities=16%  Similarity=0.112  Sum_probs=92.1

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCcee-----eEEEecCCCeEEEEECC--------CCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQS-----GALMQHEGTITCLKFTP--------EGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~-----~~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ++.++++++.|++|++||..++...     ..+.+|.+.|.+++|+|        ++++|++++.|++|++||+.++...
T Consensus       100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~  179 (393)
T 4gq1_A          100 YSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI  179 (393)
T ss_dssp             EEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence            5668999999999999999887543     23568999999999987        7889999999999999999888776


Q ss_pred             EEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCceeE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ..+ ..+... +.+++|+|++. ++++++.|+.|++||+++++...
T Consensus       180 ~~~-~~~~~~-v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          180 LAG-YPLSSP-GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAE  223 (393)
T ss_dssp             EEE-EECSSC-EEEEEEETTEEEEEEEEETTSEEEEEETTCCC---
T ss_pred             eee-cCCCCC-cEEEEECCCCCceEEecCCCCEEEEEECCCCcccc
Confidence            666 445554 89999999875 79999999999999999887643

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.88  E-value=4.1e-21  Score=128.85  Aligned_cols=116  Identities=20%  Similarity=0.395  Sum_probs=95.3

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc-----------eeeEEEecC------------CCeEEEEECCCC-
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRK-----------QSGALMQHE------------GTITCLKFTPEG-   66 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~-----------~~~~~~~~~------------~~v~~~~~~~~~-   66 (139)
                      +...|.++.|  ++++|++|+.||.|++||+.+++           ....+.+|.            ..|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            4567777776  89999999999999999998776           477888998            889999999998 


Q ss_pred             -CEEEEecCCCcEEEEEeCCceEE---------------------------------------EEEEeCCCCcceeEEEE
Q psy11518         67 -SHLISCSDDGSIAIFRVGSWQLE---------------------------------------KLFKKAHKGTAVNHISI  106 (139)
Q Consensus        67 -~~l~~~~~d~~i~~~d~~~~~~~---------------------------------------~~~~~~~~~~~v~~~~~  106 (139)
                       ..+++++.|+.|++||+.++...                                       ..+...|... |.+++|
T Consensus       107 ~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~  185 (447)
T 3dw8_B          107 AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH-INSISI  185 (447)
T ss_dssp             SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC-CCEEEE
T ss_pred             cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc-eEEEEE
Confidence             78999999999999999764432                                       1221334444 999999


Q ss_pred             ccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518        107 HPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus       107 ~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      +|++++++++ .|+.|++||+++.
T Consensus       186 ~~~~~~l~s~-~d~~i~iwd~~~~  208 (447)
T 3dw8_B          186 NSDYETYLSA-DDLRINLWHLEIT  208 (447)
T ss_dssp             CTTSSEEEEE-CSSEEEEEETTEE
T ss_pred             cCCCCEEEEe-CCCeEEEEECCCC
Confidence            9999999998 7999999999843

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.88  E-value=3.6e-21  Score=125.58  Aligned_cols=119  Identities=12%  Similarity=0.193  Sum_probs=96.6

Q ss_pred             cceeeEEEEec-----CCcEEEEeCCCCeEEEEEccCCceeeEEE-----ecCCCeEEEEECCCCC-EEEEecCCCcEEE
Q psy11518         12 SHTASVRSVAA-----TSKLAASSGADETVVLYDMVKRKQSGALM-----QHEGTITCLKFTPEGS-HLISCSDDGSIAI   80 (139)
Q Consensus        12 ~~~~~v~~~~~-----~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~   80 (139)
                      .+...+.++.+     ++..+++++.|+.|++||+.+++....+.     +|...|.+++|+|+++ ++++++.||.|++
T Consensus       207 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~i  286 (357)
T 3i2n_A          207 NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHL  286 (357)
T ss_dssp             ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEE
T ss_pred             CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEE
Confidence            45566666665     57899999999999999998877665554     8999999999999988 8999999999999


Q ss_pred             EEeCCc-------------------eEEEEEEeCCCCcceeEEEEccCCcEEE-EEcCCCeEEEEEcCCCce
Q psy11518         81 FRVGSW-------------------QLEKLFKKAHKGTAVNHISIHPSGKLAL-SVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        81 ~d~~~~-------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~  132 (139)
                      ||++.+                   ..+..+ ..|... |.+++|+|++++++ +++.|+.|++||+.+.+.
T Consensus       287 wd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          287 WKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLSTQP-ISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             EEEECCSCC--CCTTSCCCCCCCEEEEEEEE-ECCSSC-EEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred             eecCCCcccccccCCCCccccccccceeecc-ccCCCC-eeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence            999754                   233444 345444 99999999999988 899999999999987654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.87  E-value=2.2e-20  Score=129.42  Aligned_cols=125  Identities=21%  Similarity=0.336  Sum_probs=110.9

Q ss_pred             ecceeeEEEEec--CCc-EEEEeCCCCeEEEEEccCCceeeEEEecCC---CeEEEEECCC-CCEEEEecCCCcEEEEEe
Q psy11518         11 HSHTASVRSVAA--TSK-LAASSGADETVVLYDMVKRKQSGALMQHEG---TITCLKFTPE-GSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~-~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~d~~i~~~d~   83 (139)
                      .+|...+.++.|  +++ .+++++.|+.|++||..+++.+..+..|..   .|.+++|+|+ ++++++++.|+.|++||+
T Consensus       157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  236 (615)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence            456777888877  665 899999999999999999999999999998   9999999999 999999999999999999


Q ss_pred             CCceEEEEEEe---CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         84 GSWQLEKLFKK---AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        84 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++++....+..   .|... |.+++|+ +++++++++.|+.|++||+++++.+..+.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~-v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          237 KSGEFLKYIEDDQEPVQGG-IFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             TTCCEEEECCBTTBCCCSC-EEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CCCCEeEEecccccccCCc-eEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            99998887733   45544 9999999 99999999999999999999998877654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.87  E-value=5.6e-21  Score=127.01  Aligned_cols=117  Identities=20%  Similarity=0.246  Sum_probs=105.1

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      +|...+.++.+  +++++++++.|+.|++||+.+++.+..+..|...|.+++|+|++ ++++++.|+.|++||+++++..
T Consensus       245 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~  323 (425)
T 1r5m_A          245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLL  323 (425)
T ss_dssp             CCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEE
T ss_pred             cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEe
Confidence            56666776665  88999999999999999999999999999999999999999999 9999999999999999999888


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ..+ ..+... +.+++|+|+++++++++.|+.|++||+++++
T Consensus       324 ~~~-~~~~~~-i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          324 ALS-IVDGVP-IFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             EEE-ECTTCC-EEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             Eec-ccCCcc-EEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            877 444444 9999999999999999999999999998877

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.87  E-value=7.3e-21  Score=137.83  Aligned_cols=119  Identities=13%  Similarity=0.142  Sum_probs=103.5

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ...+|...|.+++|  ++++||+|+.|+.|++|+....+....+ .|...|.+++|+| +++|++++.|+.|++||+.++
T Consensus        12 ~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~   89 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQ   89 (902)
T ss_dssp             EEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTC
T ss_pred             cccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCC
Confidence            34578888888887  8999999999999999998877665544 4778999999999 889999999999999999999


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +....+.  +... |.+++|+|+++++++|+.||.|++||+++++.
T Consensus        90 ~~~~~~~--~~~~-V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~  132 (902)
T 2oaj_A           90 KVLTTVF--VPGK-ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQL  132 (902)
T ss_dssp             SEEEEEE--CSSC-EEEEECCTTCSEEEEEETTSCEEEEETTTTEE
T ss_pred             cEEEEEc--CCCC-EEEEEECCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            8887773  4443 99999999999999999999999999998765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=1.3e-20  Score=126.69  Aligned_cols=116  Identities=17%  Similarity=0.371  Sum_probs=104.4

Q ss_pred             cceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         12 SHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        12 ~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      ++...|.++.++++++++|+.|+.|++||..+++....+.+|...|.+++|  +++++++|+.||.|++||+.+++....
T Consensus       131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~  208 (435)
T 1p22_A          131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNT  208 (435)
T ss_dssp             SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEE
T ss_pred             CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            466789999999999999999999999999999999999999999999998  778999999999999999999998888


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      + ..|... |.+++|+  +..+++++.|+.|++||+++++.+
T Consensus       209 ~-~~h~~~-v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~  246 (435)
T 1p22_A          209 L-IHHCEA-VLHLRFN--NGMMVTCSKDRSIAVWDMASPTDI  246 (435)
T ss_dssp             E-CCCCSC-EEEEECC--TTEEEEEETTSCEEEEECSSSSCC
T ss_pred             E-cCCCCc-EEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCc
Confidence            7 455554 9999997  459999999999999999987654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.87  E-value=2.5e-21  Score=125.57  Aligned_cols=121  Identities=23%  Similarity=0.286  Sum_probs=99.2

Q ss_pred             EeecceeeEEEEec----CCcEEEEeCCCCeEEEEEccCC--ceeeEEEecCCCeEEEEECCC--CCEEEEecCCCcEEE
Q psy11518          9 VTHSHTASVRSVAA----TSKLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFTPE--GSHLISCSDDGSIAI   80 (139)
Q Consensus         9 ~~~~~~~~v~~~~~----~~~~l~~~~~~~~v~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~   80 (139)
                      ...+|...|.++.|    ++++|++|+.|+.|++||++++  +....+.+|...|.+++|+|+  +.++++++.|+.|++
T Consensus        52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l  131 (316)
T 3bg1_A           52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL  131 (316)
T ss_dssp             EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred             EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence            44578889998887    3789999999999999999887  356677889999999999997  789999999999999


Q ss_pred             EEeCCceEE--EEEEeCCCCcceeEEEEccC-----------------CcEEEEEcCCCeEEEEEcCCC
Q psy11518         81 FRVGSWQLE--KLFKKAHKGTAVNHISIHPS-----------------GKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        81 ~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ||++.....  ......|... +.+++|+|+                 +++|++++.|+.|++||++.+
T Consensus       132 wd~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~  199 (316)
T 3bg1_A          132 LTYTGEGQWEVKKINNAHTIG-CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED  199 (316)
T ss_dssp             EEECSSSCEEECCBTTSSSSC-BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred             EecCCCCCcceeeeeccccCC-cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence            999875322  1121334444 899999997                 478999999999999999755

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.87  E-value=2.2e-20  Score=125.11  Aligned_cols=119  Identities=22%  Similarity=0.368  Sum_probs=98.9

Q ss_pred             cceeeEEEEec---CCcEEEE--eCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec--CCCcEEEEEeC
Q psy11518         12 SHTASVRSVAA---TSKLAAS--SGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS--DDGSIAIFRVG   84 (139)
Q Consensus        12 ~~~~~v~~~~~---~~~~l~~--~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~   84 (139)
                      .|...|.++.|   +...+++  |+.|+.|++||+.+++....+..| ..+.++.|+|+++.+++++  .|+.|++||+.
T Consensus       274 ~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~  352 (420)
T 4gga_A          274 QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQLVIWKYP  352 (420)
T ss_dssp             CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCCEEEEETT
T ss_pred             ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCEEEEEECC
Confidence            45666777765   5566655  468999999999999988888765 5688999999998887654  78999999999


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      +++.+..+ ..|... |.+++|+|++++|++|+.|+.|++||+.+..+.
T Consensus       353 ~~~~v~~l-~gH~~~-V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          353 TMAKVAEL-KGHTSR-VLSLTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             TCCEEEEE-CCCSSC-EEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             CCcEEEEE-cCCCCC-EEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence            99999888 566665 999999999999999999999999999765443

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.87  E-value=3e-21  Score=128.51  Aligned_cols=124  Identities=18%  Similarity=0.232  Sum_probs=96.4

Q ss_pred             eecceeeEEEEec----------CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCC-CEEEEecCCCcE
Q psy11518         10 THSHTASVRSVAA----------TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEG-SHLISCSDDGSI   78 (139)
Q Consensus        10 ~~~~~~~v~~~~~----------~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i   78 (139)
                      ..+|...|.++.|          ++++|++|+.|++|++||+.++.++..+..|...+.+++|+|++ +++++++.|+.|
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v  211 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI  211 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence            3478888988887          57899999999999999999998888888999999999999976 579999999999


Q ss_pred             EEEEeCCceEEEEEE------------------------eCCCCcceeEEEEc-cCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         79 AIFRVGSWQLEKLFK------------------------KAHKGTAVNHISIH-PSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        79 ~~~d~~~~~~~~~~~------------------------~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      ++||+++++......                        ..+. ..+.++.|. |+++.+++++.|+.+++||+..++..
T Consensus       212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~-~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~  290 (393)
T 4gq1_A          212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA-SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY  290 (393)
T ss_dssp             EEEETTCCC----------CSCCCSEEEESGGGC------CCS-SSCSEEEEETTTTCEEEEECTTSEEEEEEC------
T ss_pred             EEEECCCCcccccccccCCcccceEEecccccceeeeeccccc-ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC
Confidence            999998775433221                        1122 237888886 79999999999999999999877654


Q ss_pred             E
Q psy11518        134 Y  134 (139)
Q Consensus       134 ~  134 (139)
                      .
T Consensus       291 ~  291 (393)
T 4gq1_A          291 N  291 (393)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.87  E-value=3.1e-20  Score=119.20  Aligned_cols=125  Identities=23%  Similarity=0.286  Sum_probs=103.3

Q ss_pred             eeEEEEEeecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEE
Q psy11518          3 TLTQTFVTHSHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIF   81 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~   81 (139)
                      ++.+.+  .+|...|.++.+ +++++++++.||.|++||+.+++....+..|...|.+++|+|+++++++++.|+.+++|
T Consensus         9 ~~~~~l--~~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~   86 (313)
T 3odt_A            9 QLSATL--KGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGV   86 (313)
T ss_dssp             EEEEEE--CCCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             HHHHHh--hCCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEE
Confidence            444444  478888888887 89999999999999999999999899999999999999999999999999999999999


Q ss_pred             EeCCc---eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         82 RVGSW---QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        82 d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ++...   +....+ ..|... +.+++|  +++++++++.|+.|++||  .++.+..
T Consensus        87 ~~~~~~~~~~~~~~-~~~~~~-i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~  137 (313)
T 3odt_A           87 PLFATSGEDPLYTL-IGHQGN-VCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYN  137 (313)
T ss_dssp             ETTCCTTSCC-CEE-CCCSSC-EEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEE
T ss_pred             EeeecCCCCcccch-hhcccC-EEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEe
Confidence            98654   334444 344444 999999  578999999999999999  4444443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.87  E-value=8.2e-22  Score=132.64  Aligned_cols=119  Identities=19%  Similarity=0.262  Sum_probs=97.4

Q ss_pred             eeEEEEe--cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeCCceEEEE
Q psy11518         15 ASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        15 ~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      ..+.++.  +++.+|++|+.|+.|++||+. ++.+..+.+|...|.+++|+|++. ++++++.|+.|++||+++......
T Consensus       210 ~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~  288 (435)
T 4e54_B          210 IWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS  288 (435)
T ss_dssp             CCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred             ccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence            3444454  489999999999999999985 456777889999999999999876 678999999999999987654332


Q ss_pred             E--EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         92 F--KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        92 ~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      +  ...|... |.+++|+|++++|++++.|+.|++||+++++....
T Consensus       289 ~~~~~~h~~~-v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~  333 (435)
T 4e54_B          289 FLYSLPHRHP-VNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG  333 (435)
T ss_dssp             CSBCCBCSSC-EEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEE
T ss_pred             EEEeeecccc-ccceeECCCCCeeEEEcCCCEEEEEECCCCccceE
Confidence            2  1234444 99999999999999999999999999998876544

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.87  E-value=2.4e-20  Score=121.95  Aligned_cols=126  Identities=21%  Similarity=0.337  Sum_probs=102.1

Q ss_pred             eecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEE--CCCCCEEEEecCCCcEEEEEeCC
Q psy11518         10 THSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKF--TPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ..+|...|.++.|  ++++|++++.|+.|++||+.+++.+. +..|...|.+++|  +|+++++++++.|+.|++||+++
T Consensus        82 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~  160 (368)
T 3mmy_A           82 QQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS  160 (368)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC
T ss_pred             eccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC
Confidence            3467777887776  89999999999999999999887665 5679999999999  89999999999999999999876


Q ss_pred             ceEEEEEE------------------------------------------------------------------------
Q psy11518         86 WQLEKLFK------------------------------------------------------------------------   93 (139)
Q Consensus        86 ~~~~~~~~------------------------------------------------------------------------   93 (139)
                      ++....+.                                                                        
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i  240 (368)
T 3mmy_A          161 SNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV  240 (368)
T ss_dssp             SSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEE
T ss_pred             CcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcE
Confidence            53221110                                                                        


Q ss_pred             -----------------eCCCCc-----------ceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         94 -----------------KAHKGT-----------AVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        94 -----------------~~~~~~-----------~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                                       ..+...           +|.+++|+|++++|++++.||.|++||+++++.+..+
T Consensus       241 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~  311 (368)
T 3mmy_A          241 AIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTS  311 (368)
T ss_dssp             EEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             EEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEe
Confidence                             001100           4889999999999999999999999999998887654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.87  E-value=2.2e-20  Score=123.67  Aligned_cols=122  Identities=20%  Similarity=0.276  Sum_probs=95.1

Q ss_pred             cceeeEEEEec--CCc-EEEEeCCCCeEEEEEccCCc-eeeEE---------------EecCCCeEEEEECCCCCEEEEe
Q psy11518         12 SHTASVRSVAA--TSK-LAASSGADETVVLYDMVKRK-QSGAL---------------MQHEGTITCLKFTPEGSHLISC   72 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~-~l~~~~~~~~v~i~~~~~~~-~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~   72 (139)
                      +|...+.++.+  +++ ++++++.|+.|++||+.++. .+..+               ..|...|.+++|+|++++++++
T Consensus       184 ~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  263 (408)
T 4a11_B          184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV  263 (408)
T ss_dssp             CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe
Confidence            56777777776  666 69999999999999997764 33333               5688899999999999999999


Q ss_pred             cCCCcEEEEEeCCce-----------------------------------------------EEEEEEeCCCCcceeEEE
Q psy11518         73 SDDGSIAIFRVGSWQ-----------------------------------------------LEKLFKKAHKGTAVNHIS  105 (139)
Q Consensus        73 ~~d~~i~~~d~~~~~-----------------------------------------------~~~~~~~~~~~~~v~~~~  105 (139)
                      +.|+.|++||+.+++                                               ....+ ..|.. .|.+++
T Consensus       264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~-~v~~~~  341 (408)
T 4a11_B          264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITML-KGHYK-TVDCCV  341 (408)
T ss_dssp             ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEE-CCCSS-CEEEEE
T ss_pred             cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeee-ccCCC-eEEEEE
Confidence            999999999987543                                               22233 23444 499999


Q ss_pred             EccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518        106 IHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus       106 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      |+|++++|++++.||.|++||+++++++..
T Consensus       342 ~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~  371 (408)
T 4a11_B          342 FQSNFQELYSGSRDCNILAWVPSLYEPVPD  371 (408)
T ss_dssp             EETTTTEEEEEETTSCEEEEEECC------
T ss_pred             EcCCCCEEEEECCCCeEEEEeCCCCCccCC
Confidence            999999999999999999999999887654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.87  E-value=2.2e-20  Score=122.13  Aligned_cols=118  Identities=17%  Similarity=0.157  Sum_probs=104.3

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCC-------------
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG-------------   76 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------   76 (139)
                      .|...+.++.|  ++.+|++++.|+.|++||+.+++.+..+. +...+.+++|+|+++++++++.++             
T Consensus       216 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  294 (369)
T 3zwl_B          216 LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGK  294 (369)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------
T ss_pred             cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCc
Confidence            46666777766  89999999999999999999999888887 678899999999999999999888             


Q ss_pred             -cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         77 -SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        77 -~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                       .+++||..+++....+ ..|... |.+++|+|++++|++++.||.|++|+++++..
T Consensus       295 ~~i~~~d~~~~~~~~~~-~~~~~~-v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  349 (369)
T 3zwl_B          295 FEARFYHKIFEEEIGRV-QGHFGP-LNTVAISPQGTSYASGGEDGFIRLHHFEKSYF  349 (369)
T ss_dssp             CEEEEEETTTCCEEEEE-ECCSSC-EEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred             ceeEEEecCCCcchhhe-ecccCc-EEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence             8999999999988887 555555 99999999999999999999999999987644

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.87  E-value=3.7e-20  Score=124.50  Aligned_cols=123  Identities=24%  Similarity=0.376  Sum_probs=106.0

Q ss_pred             eecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         10 THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        10 ~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ..+|...|.++.++++++++|+.||.|++||+.+++.+..+.+|...|.+++|++  ..+++++.|+.|++||+.++...
T Consensus       169 ~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~  246 (435)
T 1p22_A          169 LTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI  246 (435)
T ss_dssp             ECCCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC
T ss_pred             EcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc
Confidence            4478889999999999999999999999999999999999999999999999974  59999999999999999877644


Q ss_pred             E--EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         90 K--LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        90 ~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .  .....|... |.+++|  +++++++++.|+.|++||+++++.+..+.
T Consensus       247 ~~~~~~~~~~~~-v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~  293 (435)
T 1p22_A          247 TLRRVLVGHRAA-VNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN  293 (435)
T ss_dssp             EEEEEECCCSSC-EEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eeeeEecCCCCc-EEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc
Confidence            2  222445444 999988  68899999999999999999998877654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.86  E-value=1.3e-20  Score=122.86  Aligned_cols=124  Identities=15%  Similarity=0.197  Sum_probs=99.7

Q ss_pred             eecceeeEEEEec--CCc-EEEEeCC---CCeEEEEEccCCceeeEE-EecCCCeEEEEECCC---CCEEEEecCCCcEE
Q psy11518         10 THSHTASVRSVAA--TSK-LAASSGA---DETVVLYDMVKRKQSGAL-MQHEGTITCLKFTPE---GSHLISCSDDGSIA   79 (139)
Q Consensus        10 ~~~~~~~v~~~~~--~~~-~l~~~~~---~~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~   79 (139)
                      ..+|...|.++.|  ++. ++++++.   |+.|++||+.+++..... .+|...|.+++|+|+   ++++++++.|+.|+
T Consensus        14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~   93 (357)
T 3i2n_A           14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH   93 (357)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred             ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence            3468888888887  564 5566765   999999999988765443 378999999999998   69999999999999


Q ss_pred             EEEeCCce-EEEEEEeCCCCcceeEEE------EccCCcEEEEEcCCCeEEEEEcCCCc-eeEE
Q psy11518         80 IFRVGSWQ-LEKLFKKAHKGTAVNHIS------IHPSGKLALSVGKDKTLRTWNLVKGR-SAYI  135 (139)
Q Consensus        80 ~~d~~~~~-~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~  135 (139)
                      +||+.+++ ....+ ..|... |.+++      |+|+++++++++.|+.|++||+++++ .+..
T Consensus        94 iwd~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~  155 (357)
T 3i2n_A           94 IWNLEAPEMPVYSV-KGHKEI-INAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVAN  155 (357)
T ss_dssp             EECTTSCSSCSEEE-CCCSSC-EEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred             EEeCCCCCccEEEE-Eecccc-eEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCccee
Confidence            99999887 55565 455555 99995      57899999999999999999999886 4443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.86  E-value=7.1e-21  Score=127.71  Aligned_cols=123  Identities=18%  Similarity=0.346  Sum_probs=99.8

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC-ceeeE-------EEecCCCeEEEEECCCC-CEEEEecCCCcEE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKR-KQSGA-------LMQHEGTITCLKFTPEG-SHLISCSDDGSIA   79 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~-~~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~   79 (139)
                      .+|...|.++.|  ++++|++| .|+.|++||+.+. +.+..       +.+|...|.+++|+|++ +++++++.|+.|+
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            467777888776  89999999 7999999999843 33332       45789999999999998 9999999999999


Q ss_pred             EEEeCCceE----EEEEEeCCCC-----------cceeEEEEccCCcEEEEEcCCCeEEEEEcCC-CceeEEE
Q psy11518         80 IFRVGSWQL----EKLFKKAHKG-----------TAVNHISIHPSGKLALSVGKDKTLRTWNLVK-GRSAYIT  136 (139)
Q Consensus        80 ~~d~~~~~~----~~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~  136 (139)
                      +||++++..    ...+ ..+..           ..|.+++|+|++++|++++. +.|++||+++ ++.+..+
T Consensus       253 iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~  323 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETY  323 (447)
T ss_dssp             EEETTTCSSSCTTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCE
T ss_pred             EEECcCCccccceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccccee
Confidence            999998775    4555 33333           14999999999999999999 9999999997 6665444

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.7e-21  Score=127.07  Aligned_cols=118  Identities=14%  Similarity=0.202  Sum_probs=103.0

Q ss_pred             eeeEEEEec--CC-cEEEEeCCCC---eEEEEEccCC-ceeeEEE-ecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeC
Q psy11518         14 TASVRSVAA--TS-KLAASSGADE---TVVLYDMVKR-KQSGALM-QHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        14 ~~~v~~~~~--~~-~~l~~~~~~~---~v~i~~~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~   84 (139)
                      ...+.++.|  ++ .++++++.++   .|++||+.++ .++..+. +|...|.+++|+| +++++++++.|+.|++||++
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~  293 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE  293 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSS
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCC
Confidence            566777776  54 6899999998   9999999986 6677787 8999999999999 89999999999999999999


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCC-cEEEEEcCCCeEEEEEcCCCcee
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSG-KLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      +++....+ ..|... |.+++|+|++ .++++++.|+.|++||+.+.+..
T Consensus       294 ~~~~~~~~-~~~~~~-v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~  341 (416)
T 2pm9_A          294 SAEQLSQF-PARGNW-CFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT  341 (416)
T ss_dssp             SCCEEEEE-ECSSSC-CCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred             CCccceee-cCCCCc-eEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence            99888887 455554 9999999999 89999999999999999887643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.86  E-value=1.1e-19  Score=122.42  Aligned_cols=120  Identities=20%  Similarity=0.361  Sum_probs=98.8

Q ss_pred             ecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        11 ~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      .+|...+.++.++++.+++|+.|+.|++||+.+++.+..+.+|...|.+++|  +++++++++.|+.|++||+++++...
T Consensus       196 ~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~  273 (445)
T 2ovr_B          196 YGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLH  273 (445)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEE
T ss_pred             CCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeE
Confidence            4677788888888888888888899999998888888888888888888888  67788888889999999988888777


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .+ ..|... +.+++|  ++.++++++.|+.|++||+++++.+..+
T Consensus       274 ~~-~~~~~~-v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~  315 (445)
T 2ovr_B          274 TL-QGHTNR-VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL  315 (445)
T ss_dssp             EE-CCCSSC-EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             Ee-cCCCCc-eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEE
Confidence            76 344444 888888  7888889999999999999888877654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.86  E-value=9.3e-21  Score=130.07  Aligned_cols=114  Identities=16%  Similarity=0.234  Sum_probs=93.2

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCC-----CeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEG-----TITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      +...|.++.|  +|..|++++.||.|++||.+.  .+..+. |..     .+.+++|+|+|++|++|+.||.|++||+.+
T Consensus        84 ~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~  160 (588)
T 2j04_A           84 PVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK  160 (588)
T ss_dssp             CSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence            3566777776  999999999999999999544  555566 655     499999999999999999999999999988


Q ss_pred             ce-------EEEEEE---eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         86 WQ-------LEKLFK---KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        86 ~~-------~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +.       ....+.   ..|. ..|.+++|+|+|  +++++.|+.+++||+.+++.
T Consensus       161 ~~l~~~~~i~l~ti~~~~~gh~-~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~  214 (588)
T 2j04_A          161 NSENTPEFYFESSIRLSDAGSK-DWVTHIVWYEDV--LVAALSNNSVFSMTVSASSH  214 (588)
T ss_dssp             CTTTCCCCEEEEEEECSCTTCC-CCEEEEEEETTE--EEEEETTCCEEEECCCSSSS
T ss_pred             Cccccccceeeeeeeccccccc-ccEEEEEEcCCc--EEEEeCCCeEEEEECCCCcc
Confidence            74       244442   2333 349999999999  88889999999999988773

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.86  E-value=5.2e-20  Score=123.78  Aligned_cols=123  Identities=19%  Similarity=0.257  Sum_probs=99.0

Q ss_pred             ecceeeEEEEec--CCc-EEEEeCCCCeEEEEEccCCce-------eeEEEecCCCeEEEEECC-CCCEEEEecCCCcEE
Q psy11518         11 HSHTASVRSVAA--TSK-LAASSGADETVVLYDMVKRKQ-------SGALMQHEGTITCLKFTP-EGSHLISCSDDGSIA   79 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~-~l~~~~~~~~v~i~~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~   79 (139)
                      .+|...+.++.|  ++. +|++|+.||.|++|++.++..       ...+..|...|.+++|+| ++.++++++.|+.|+
T Consensus       178 ~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~  257 (430)
T 2xyi_A          178 RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLM  257 (430)
T ss_dssp             ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEE
Confidence            356666666666  666 999999999999999987422       456678999999999999 788999999999999


Q ss_pred             EEEeCCc---eEEEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCC-ceeEE
Q psy11518         80 IFRVGSW---QLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKG-RSAYI  135 (139)
Q Consensus        80 ~~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~  135 (139)
                      +||+++.   .....+ ..|... |.+++|+|+++ ++++++.|+.|++||+++. +++..
T Consensus       258 i~d~~~~~~~~~~~~~-~~~~~~-v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~  316 (430)
T 2xyi_A          258 IWDTRNNNTSKPSHTV-DAHTAE-VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS  316 (430)
T ss_dssp             EEETTCSCSSSCSEEE-ECCSSC-EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEE
T ss_pred             EEECCCCCCCcceeEe-ecCCCC-eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEE
Confidence            9999876   344444 355554 99999999887 6889999999999999983 44443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.86  E-value=5.4e-20  Score=123.87  Aligned_cols=120  Identities=21%  Similarity=0.344  Sum_probs=104.1

Q ss_pred             ecceee-EEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         11 HSHTAS-VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        11 ~~~~~~-v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      .+|... +.++.++++++++|+.|+.|++||+.+++.+..+.+|...|.+++|+  ++.+++++.||.|++||+.+++..
T Consensus       115 ~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~  192 (445)
T 2ovr_B          115 KGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECI  192 (445)
T ss_dssp             ECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEE
T ss_pred             cccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEE
Confidence            356654 56788899999999999999999999999999999999999999996  569999999999999999999888


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..+ ..|... |.+++|+  ++.+++++.|+.|++||+++++.+..+
T Consensus       193 ~~~-~~h~~~-v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~  235 (445)
T 2ovr_B          193 HTL-YGHTST-VRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVL  235 (445)
T ss_dssp             EEE-CCCSSC-EEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEE
T ss_pred             EEE-CCCCCc-EEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            877 455554 9999985  677999999999999999998877654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.4e-20  Score=124.21  Aligned_cols=119  Identities=13%  Similarity=0.083  Sum_probs=101.7

Q ss_pred             ecceeeEEEEec--C---CcEEEEeCCCCeEEEEEccCCceeeE-EEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518         11 HSHTASVRSVAA--T---SKLAASSGADETVVLYDMVKRKQSGA-LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        11 ~~~~~~v~~~~~--~---~~~l~~~~~~~~v~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      .+|...+.++.|  +   +++|++++.|+.|++||+.+++.+.. +.+|...|.+++|+ ++++|++++.|+.|++||+.
T Consensus       192 ~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          192 LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK  270 (450)
T ss_dssp             EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETT
T ss_pred             ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECC
Confidence            356677777776  7   88999999999999999999988877 55899999999999 99999999999999999999


Q ss_pred             CceEEEEEEeC-----------------------CCCcceeEEEEccCCcEEEEEc-CCCeEEEEEc--CCC
Q psy11518         85 SWQLEKLFKKA-----------------------HKGTAVNHISIHPSGKLALSVG-KDKTLRTWNL--VKG  130 (139)
Q Consensus        85 ~~~~~~~~~~~-----------------------~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~--~~~  130 (139)
                      +++.+..+...                       .....+.+++|+|+++++++++ .|+.|++|++  .++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          271 TGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             TCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred             CCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence            99888777422                       1123488999999999999998 8999999999  555

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.86  E-value=1.3e-19  Score=116.60  Aligned_cols=119  Identities=19%  Similarity=0.309  Sum_probs=90.4

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCcee----eE------------------------------------
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQS----GA------------------------------------   49 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~----~~------------------------------------   49 (139)
                      +|...+.++.+  +++++++++.|+.|++||+.+++..    ..                                    
T Consensus       148 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd  227 (318)
T 4ggc_A          148 GHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWN  227 (318)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEE
T ss_pred             CccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEe
Confidence            45555555554  7888888888888888887653211    00                                    


Q ss_pred             --------EEecCCCeEEEEECCCCCEEEEe--cCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC
Q psy11518         50 --------LMQHEGTITCLKFTPEGSHLISC--SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD  119 (139)
Q Consensus        50 --------~~~~~~~v~~~~~~~~~~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  119 (139)
                              ...+...+..+.|+|++..++++  +.|+.|++||+++++.+..+ ..|... |.+++|+|++++|++++.|
T Consensus       228 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH~~~-V~~l~~spdg~~l~S~s~D  305 (318)
T 4ggc_A          228 VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHTSR-VLSLTMSPDGATVASAAAD  305 (318)
T ss_dssp             TTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCSSC-EEEEEECTTSSCEEEEETT
T ss_pred             cccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCCCCC-EEEEEEcCCCCEEEEEecC
Confidence                    11234567788888888777654  47899999999999998888 566655 9999999999999999999


Q ss_pred             CeEEEEEcCCCce
Q psy11518        120 KTLRTWNLVKGRS  132 (139)
Q Consensus       120 ~~i~i~d~~~~~~  132 (139)
                      +.|++||+.+..|
T Consensus       306 ~~v~iWd~~~~dP  318 (318)
T 4ggc_A          306 ETLRLWRCFELDP  318 (318)
T ss_dssp             TEEEEECCSCCCC
T ss_pred             CeEEEEECCCCCC
Confidence            9999999987643

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.86  E-value=7.3e-21  Score=123.69  Aligned_cols=115  Identities=10%  Similarity=0.129  Sum_probs=99.3

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc---eeeEEEecCCCeEEEEECCCCC-EEEEecCCCcEEEEEe-
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRK---QSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRV-   83 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~-   83 (139)
                      .+|...|.++.|  ++++|++++.|+.|++|++.+++   ....+..|...|.+++|+|+++ ++++++.|+.|++||+ 
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            367788888877  88999999999999999998876   3455668999999999999999 9999999999999999 


Q ss_pred             CCceEEEEEEeC--CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         84 GSWQLEKLFKKA--HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        84 ~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      .+++. ..+ ..  |... |.+++|+| +.++++++.|+.|++||+++
T Consensus        88 ~~~~~-~~~-~~~~~~~~-v~~l~~~~-~~~l~s~~~d~~i~iwd~~~  131 (342)
T 1yfq_A           88 GSPSF-QAL-TNNEANLG-ICRICKYG-DDKLIAASWDGLIEVIDPRN  131 (342)
T ss_dssp             SSSSE-EEC-BSCCCCSC-EEEEEEET-TTEEEEEETTSEEEEECHHH
T ss_pred             cCCce-Eec-cccCCCCc-eEEEEeCC-CCEEEEEcCCCeEEEEcccc
Confidence            87766 333 33  4444 99999999 99999999999999999986

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=5.4e-20  Score=120.33  Aligned_cols=106  Identities=15%  Similarity=0.084  Sum_probs=88.9

Q ss_pred             EEEeCCCCeEEEEEcc---------CCceeeEEE-ecCCCeEEEEECC--CCCEEEEecCCCcEEEEEeCCceEEEEEEe
Q psy11518         27 AASSGADETVVLYDMV---------KRKQSGALM-QHEGTITCLKFTP--EGSHLISCSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        27 l~~~~~~~~v~i~~~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      +++++.|+.|++|+..         +++.+..+. .|...|.+++|+|  +++++++++.|+.|++||+++++...... 
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-  166 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS-  166 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEEC-
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-
Confidence            8999999999999765         444444444 5668899999999  99999999999999999999998866553 


Q ss_pred             CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         95 AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      .+....+.+++|+|++.++++|+.|+.|++||+++++.+
T Consensus       167 ~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          167 AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence            333434999999999999999999999999999998876

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.86  E-value=1.1e-19  Score=121.80  Aligned_cols=126  Identities=21%  Similarity=0.254  Sum_probs=108.5

Q ss_pred             eeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEE
Q psy11518          3 TLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAI   80 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   80 (139)
                      +..+.+..++|...|.+++|  ++++|++|+.|+.|++||+.+++.+..+.+|...+.++++  ++..+++|+.|+.+.+
T Consensus       136 ~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~  213 (420)
T 4gga_A          136 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHH  213 (420)
T ss_dssp             CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred             CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeE
Confidence            45566777788888888887  8999999999999999999999999999999999999887  5679999999999999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ||.............|... +..+.|+|+++++++++.|+.+++|+..+++
T Consensus       214 ~d~~~~~~~~~~~~~h~~~-~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~  263 (420)
T 4gga_A          214 HDVRVAEHHVATLSGHSQE-VCGLRWAPDGRHLASGGNDNLVNVWPSAPGE  263 (420)
T ss_dssp             EETTSSSCEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEESSCCS
T ss_pred             eeecccceeeEEecccccc-eeeeeecCCCCeeeeeeccccceEEeecccc
Confidence            9988755433332555555 9999999999999999999999999998765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.9e-20  Score=132.57  Aligned_cols=122  Identities=20%  Similarity=0.321  Sum_probs=103.2

Q ss_pred             EeecceeeEEEEec--C--CcEEEEeCCCCeEEEEEccCCc--eeeEEEecCCCeEEEEECCC--CCEEEEecCCCcEEE
Q psy11518          9 VTHSHTASVRSVAA--T--SKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPE--GSHLISCSDDGSIAI   80 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~--~~~l~~~~~~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~~   80 (139)
                      ...+|...|.++.|  +  ++++++|+.||.|++||+.+++  .+..+.+|...|.+++|+|+  ++.+++++.||.|++
T Consensus        48 ~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v  127 (753)
T 3jro_A           48 TLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV  127 (753)
T ss_dssp             EECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred             eccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence            34478888888887  4  8999999999999999999886  67778889999999999998  999999999999999


Q ss_pred             EEeCCceEEEEEE-eCCCCcceeEEEEcc-------------CCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         81 FRVGSWQLEKLFK-KAHKGTAVNHISIHP-------------SGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        81 ~d~~~~~~~~~~~-~~~~~~~v~~~~~~~-------------~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ||++++....... ..+... |.+++|+|             ++.++++++.||.|++||++++.
T Consensus       128 wdl~~~~~~~~~~~~~~~~~-v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~  191 (753)
T 3jro_A          128 VEFKENGTTSPIIIDAHAIG-VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (753)
T ss_dssp             EECCSSSCCCCEEEECCSSC-EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred             EEeecCCCcceeEeecCCCc-eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence            9998773322221 344444 99999999             58999999999999999998874

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.5e-20  Score=125.07  Aligned_cols=126  Identities=18%  Similarity=0.281  Sum_probs=106.0

Q ss_pred             ecceeeEEEEec--C-CcEEEEeCCCCeEEEEEccCCceeeEEEec------CCCeEEEEECCCC-CEEEEecCCC---c
Q psy11518         11 HSHTASVRSVAA--T-SKLAASSGADETVVLYDMVKRKQSGALMQH------EGTITCLKFTPEG-SHLISCSDDG---S   77 (139)
Q Consensus        11 ~~~~~~v~~~~~--~-~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~d~---~   77 (139)
                      .+|...+.++.|  + +.++++++.|+.|++||+.+++.+..+..+      ...+.+++|+|++ .++++++.|+   .
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            356677777777  5 789999999999999999999988888776      7889999999986 6899999998   9


Q ss_pred             EEEEEeCCc-eEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         78 IAIFRVGSW-QLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        78 i~~~d~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      |++||++++ .....+...|... |.+++|+| +++++++++.|+.|++||+++++.+..+.
T Consensus       242 i~~~d~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~  302 (416)
T 2pm9_A          242 ILIWDLRNANTPLQTLNQGHQKG-ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP  302 (416)
T ss_dssp             CCEEETTSTTSCSBCCCSCCSSC-EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred             EEEEeCCCCCCCcEEeecCccCc-eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence            999999886 4444441145544 99999999 99999999999999999999998877654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.85  E-value=7.3e-20  Score=123.03  Aligned_cols=117  Identities=27%  Similarity=0.467  Sum_probs=99.5

Q ss_pred             ecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCC---ceeeEEEecCCCeEEEEECCCCC-EEEEecCCCcEEEEEe
Q psy11518         11 HSHTASVRSVAA---TSKLAASSGADETVVLYDMVKR---KQSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRV   83 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~   83 (139)
                      .+|...+.++.|   ++.++++++.|+.|++||+.++   +.+..+..|...|.+++|+|++. ++++++.||.|++||+
T Consensus       228 ~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~  307 (430)
T 2xyi_A          228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL  307 (430)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred             cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeC
Confidence            367777887776   6789999999999999999877   57778889999999999999887 6889999999999999


Q ss_pred             CC-ceEEEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCC
Q psy11518         84 GS-WQLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        84 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~  129 (139)
                      ++ ...+..+ ..|... |.+++|+|+++ ++++++.|+.|++||++.
T Consensus       308 ~~~~~~~~~~-~~h~~~-v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~  353 (430)
T 2xyi_A          308 RNLKLKLHSF-ESHKDE-IFQVQWSPHNETILASSGTDRRLHVWDLSK  353 (430)
T ss_dssp             TCTTSCSEEE-ECCSSC-EEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred             CCCCCCeEEe-ecCCCC-EEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence            87 4445555 445554 99999999985 689999999999999987

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.85  E-value=2.3e-19  Score=115.51  Aligned_cols=127  Identities=20%  Similarity=0.253  Sum_probs=108.4

Q ss_pred             eeEEEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEE
Q psy11518          3 TLTQTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAI   80 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   80 (139)
                      +.++.+..++|...|.++.|  +++++++|+.|+.|++||+++++.+..+.+|...+.++.+  ++..+++++.++.+.+
T Consensus        56 ~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~  133 (318)
T 4ggc_A           56 DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHH  133 (318)
T ss_dssp             CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEE
T ss_pred             CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEe
Confidence            45677777788888888887  8999999999999999999999999999999988877655  5679999999999999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      |+.............|... +..+.++++++++++++.|+.|++||+++++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~  184 (318)
T 4ggc_A          134 HDVRVAEHHVATLSGHSQE-VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG  184 (318)
T ss_dssp             EETTSSSCEEEEEECCSSC-EEEEEECTTSSEEEEEETTSCEEEEESSCBTT
T ss_pred             eecCCCceeEEEEcCccCc-eEEEEEcCCCCEEEEEecCcceeEEECCCCcc
Confidence            9988765444333555555 99999999999999999999999999987653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.85  E-value=1.3e-19  Score=117.77  Aligned_cols=123  Identities=17%  Similarity=0.188  Sum_probs=102.3

Q ss_pred             ceeeEEEEecCCcEEEEeCCCCeEEEEEccC-Cce--eeEEEecCCCeEEEEECC-CCCEEEEecCCCcEEEEEeCCc--
Q psy11518         13 HTASVRSVAATSKLAASSGADETVVLYDMVK-RKQ--SGALMQHEGTITCLKFTP-EGSHLISCSDDGSIAIFRVGSW--   86 (139)
Q Consensus        13 ~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~-~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~--   86 (139)
                      +...+.++.+....+++++.++.|++||+.+ +..  ......|...+.+++|+| +++++++++.||.+++|+++..  
T Consensus       149 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  228 (342)
T 1yfq_A          149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             eCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc
Confidence            6678888888666699999999999999988 543  334446788999999999 9999999999999999999876  


Q ss_pred             ----eEEEEEEeCCCC--------cceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         87 ----QLEKLFKKAHKG--------TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        87 ----~~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                          .....+ ..+..        .+|.+++|+|++++|++++.||.|++||+++++.+..+
T Consensus       229 ~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  289 (342)
T 1yfq_A          229 DYNSSKRFAF-RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF  289 (342)
T ss_dssp             STTCTTCEEE-ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC
T ss_pred             ccccccceee-ecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh
Confidence                555555 33322        24999999999999999999999999999999887654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.84  E-value=4.6e-19  Score=117.33  Aligned_cols=123  Identities=18%  Similarity=0.316  Sum_probs=104.0

Q ss_pred             ecceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEE-------------ecCCCeEEEEECC-CCCEEEEec
Q psy11518         11 HSHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALM-------------QHEGTITCLKFTP-EGSHLISCS   73 (139)
Q Consensus        11 ~~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-------------~~~~~v~~~~~~~-~~~~l~~~~   73 (139)
                      .+|...|.++.|   ++++|++|+.||.|++||+.+++....+.             +|...|.+++|+| +++++++++
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            357778887776   78999999999999999999886665543             4899999999999 788999999


Q ss_pred             CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccC---CcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         74 DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS---GKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        74 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .|+.|++||+.+++....+.  +... +.+++|+|.   +.++++++.|+.|++||+++++.+..+
T Consensus       120 ~d~~i~iwd~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  182 (408)
T 4a11_B          120 FDKTLKVWDTNTLQTADVFN--FEET-VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL  182 (408)
T ss_dssp             TTSEEEEEETTTTEEEEEEE--CSSC-EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE
T ss_pred             CCCeEEEeeCCCCccceecc--CCCc-eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee
Confidence            99999999999998888774  3333 889999984   449999999999999999988776654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.83  E-value=9.7e-19  Score=115.53  Aligned_cols=122  Identities=12%  Similarity=0.127  Sum_probs=94.5

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeE--EEecCCCeEEEEECCCCCEEEEecCCC----cEEEEEeC
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGA--LMQHEGTITCLKFTPEGSHLISCSDDG----SIAIFRVG   84 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~~~d~~   84 (139)
                      |...|.++.|  +++++++++.+ .+.+|+..+++.+..  ...|...|.+++|+|+++++++++.++    .+..|++.
T Consensus       175 ~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~  253 (365)
T 4h5i_A          175 TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIK  253 (365)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEE
T ss_pred             CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccc
Confidence            4455666665  99999999855 466677677765543  346888899999999999999998877    58889987


Q ss_pred             CceEEE--EEE-eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         85 SWQLEK--LFK-KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        85 ~~~~~~--~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ......  ... ..+... |.+++|+|++++|++|+.|+.|+|||+++++++..+
T Consensus       254 ~~~~~~~~~~~~~~~~~~-V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~  307 (365)
T 4h5i_A          254 SGNTSVLRSKQVTNRFKG-ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF  307 (365)
T ss_dssp             TTEEEEEEEEEEESSCSC-EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             cceecceeeeeecCCCCC-eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence            765422  111 334444 999999999999999999999999999999887654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.81  E-value=5e-18  Score=110.56  Aligned_cols=124  Identities=19%  Similarity=0.126  Sum_probs=95.7

Q ss_pred             cceeeEEEEecCCcEEEEeC--CCCeEEEEEc-cCCceeeEEEecCCCeEEEEECC---CCCEEEEecCCCcEEEEEeCC
Q psy11518         12 SHTASVRSVAATSKLAASSG--ADETVVLYDM-VKRKQSGALMQHEGTITCLKFTP---EGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        12 ~~~~~v~~~~~~~~~l~~~~--~~~~v~i~~~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ++...+..+ .+++++.+++  .|+.|++|++ .+++.+..+.+|...+..++|+|   ++..|++++.|++|++||+.+
T Consensus       134 g~~~~v~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T  212 (356)
T 2w18_A          134 GNIKAVLGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT  212 (356)
T ss_dssp             EEEEEEEEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT
T ss_pred             CCeEEEEec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC
Confidence            445555554 3566666644  6999999999 45888888889999999999999   779999999999999999999


Q ss_pred             ceEEEEEEeCCC-CcceeEEEEccCCcEE------------EEEcCCCeEEEEEcCCCceeEEE
Q psy11518         86 WQLEKLFKKAHK-GTAVNHISIHPSGKLA------------LSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        86 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l------------~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ++.+..+...+. ...+.+++|+|+++++            ++|+.|++|++||..+++.+..+
T Consensus       213 Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~  276 (356)
T 2w18_A          213 GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM  276 (356)
T ss_dssp             CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE
T ss_pred             CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE
Confidence            999998842221 2237788999999987            55778999999999999876543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.81  E-value=1e-18  Score=120.09  Aligned_cols=110  Identities=8%  Similarity=0.138  Sum_probs=89.8

Q ss_pred             EEEEe--cCCcEEEEeCCCCeEEEEEccCCce-------eeEE----EecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518         17 VRSVA--ATSKLAASSGADETVVLYDMVKRKQ-------SGAL----MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        17 v~~~~--~~~~~l~~~~~~~~v~i~~~~~~~~-------~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      +.+++  |+|++|++|+.||+|++||+.++..       +.++    .+|...|.+++|+|++  +++++.|+.+++||+
T Consensus       132 v~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~  209 (588)
T 2j04_A          132 YHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTV  209 (588)
T ss_dssp             EEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECC
T ss_pred             EEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEEC
Confidence            55555  5999999999999999999988753       5666    4677899999999999  788888999999999


Q ss_pred             CCceE---EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         84 GSWQL---EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        84 ~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      .++..   ...+...|... |.+++|+  ++.+++++ ++.|++||+.+++.
T Consensus       210 ~~~~~~~~~~tL~~~h~~~-V~svaFs--g~~LASa~-~~tIkLWd~~~~~~  257 (588)
T 2j04_A          210 SASSHQPVSRMIQNASRRK-ITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI  257 (588)
T ss_dssp             CSSSSCCCEEEEECCCSSC-CCCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred             CCCccccceeeecccccCc-EEEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence            88773   23443345444 9999999  68888887 69999999998776

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.80  E-value=6.8e-17  Score=106.89  Aligned_cols=117  Identities=12%  Similarity=0.167  Sum_probs=96.1

Q ss_pred             EEEEec--CCcEE-EEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEEEeCCceEEEEE
Q psy11518         17 VRSVAA--TSKLA-ASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        17 v~~~~~--~~~~l-~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      +.++.+  +++.+ ++++.++.|++||+.+++.+..+..+. .+.+++|+|++++++ ++..++.|.+||+.+++....+
T Consensus        34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~  112 (391)
T 1l0q_A           34 PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV  112 (391)
T ss_dssp             EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE
Confidence            455554  88766 677799999999999999888887655 899999999999875 5566799999999999888777


Q ss_pred             EeCCCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         93 KKAHKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      . . ... +.+++|+|+++.+ ++++.++.|++||+++++.+..+.
T Consensus       113 ~-~-~~~-~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  155 (391)
T 1l0q_A          113 K-T-GKS-PLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (391)
T ss_dssp             E-C-SSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             e-C-CCC-cceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence            3 2 233 8999999999977 688889999999999988776654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.79  E-value=2.2e-17  Score=110.53  Aligned_cols=122  Identities=11%  Similarity=0.051  Sum_probs=103.7

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEEEeCCceE
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~   88 (139)
                      +|...+.++.+  ++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|+++.++ +++.++.|.+||+++++.
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence            45667777776  888999999999999999999999999988999999999999998874 556899999999999888


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEc--------CCCeEEEEEcCCCceeEEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVG--------KDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~d~~i~i~d~~~~~~~~~~  136 (139)
                      ...+.  .... +.+++|+|+++++++++        .|+.|++||+++++.+..+
T Consensus       247 ~~~~~--~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~  299 (433)
T 3bws_A          247 IRKTD--KIGL-PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI  299 (433)
T ss_dssp             EEECC--CCSE-EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE
T ss_pred             EEEec--CCCC-ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec
Confidence            77662  2333 89999999999998887        5889999999998776554

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.79  E-value=8.4e-18  Score=112.54  Aligned_cols=117  Identities=10%  Similarity=0.075  Sum_probs=97.2

Q ss_pred             EEEecCCcEEEEeCCCCeEEEEEccCCceee-----EEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE
Q psy11518         18 RSVAATSKLAASSGADETVVLYDMVKRKQSG-----ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      .++.+++.++++++.++.|++||+.+++...     .+.+|...+.+++|+|+++++++++.|+.|++||+++++....+
T Consensus       128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~  207 (433)
T 3bws_A          128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATV  207 (433)
T ss_dssp             CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEE
Confidence            3444577788888899999999999988776     33468889999999999999999999999999999998888777


Q ss_pred             EeCCCCcceeEEEEccCCcEEE-EEcCCCeEEEEEcCCCceeEEE
Q psy11518         93 KKAHKGTAVNHISIHPSGKLAL-SVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      . .+... +.+++|+|+++.++ +++.|+.|++||+++++.+..+
T Consensus       208 ~-~~~~~-~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~  250 (433)
T 3bws_A          208 D-LTGKW-SKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKT  250 (433)
T ss_dssp             E-CSSSS-EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             c-CCCCC-eeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEe
Confidence            3 44444 89999999999775 5558999999999998876654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.77  E-value=4.6e-16  Score=102.91  Aligned_cols=117  Identities=11%  Similarity=0.147  Sum_probs=95.7

Q ss_pred             EEEEecCCcEE-EEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec---CCCcEEEEEeCCceEEEEE
Q psy11518         17 VRSVAATSKLA-ASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS---DDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        17 v~~~~~~~~~l-~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~   92 (139)
                      ..++.++++.+ ++++.++.|++||+.+++....+. +...+.+++|+|+++++++++   .++.|.+||+.+++....+
T Consensus       162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~  240 (391)
T 1l0q_A          162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI  240 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE
Confidence            33444578776 678889999999999988777765 456789999999999988887   6899999999999887777


Q ss_pred             EeCCCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         93 KKAHKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .. +. . +.+++|+|+++++ ++++.|+.|++||+.+++.+..+.
T Consensus       241 ~~-~~-~-~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          241 PV-GP-D-PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             EC-CS-S-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ec-CC-C-ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence            33 22 3 7899999999877 677889999999999998877654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=3.8e-17  Score=110.27  Aligned_cols=119  Identities=15%  Similarity=0.136  Sum_probs=94.6

Q ss_pred             ecceeeEEEEec--C-CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         11 HSHTASVRSVAA--T-SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        11 ~~~~~~v~~~~~--~-~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      .+|...|.++.|  + +.++++++.|+.|++||++++.......+|...|.+++|+|++++|++|+.||.|++||.+ +.
T Consensus       146 ~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~  224 (434)
T 2oit_A          146 KDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ  224 (434)
T ss_dssp             CSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC
T ss_pred             CCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc
Confidence            357778888887  4 7899999999999999999987776777888999999999999999999999999999998 55


Q ss_pred             EEEEEEeCCC-----CcceeEEEEccCCcEEEEEc-CCC------eEEEEEcCCC
Q psy11518         88 LEKLFKKAHK-----GTAVNHISIHPSGKLALSVG-KDK------TLRTWNLVKG  130 (139)
Q Consensus        88 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~d~------~i~i~d~~~~  130 (139)
                      ....+.....     ...+.+++|++++.++++.+ .+|      .+++|++++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          225 EKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             ccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            4444422111     12489999999988775432 332      3899999865

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.71  E-value=4.4e-15  Score=99.65  Aligned_cols=116  Identities=15%  Similarity=0.166  Sum_probs=89.6

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCC---eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCc--EEEEEeC
Q psy11518         13 HTASVRSVAA--TSKLAASSGADE---TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGS--IAIFRVG   84 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~---~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~--i~~~d~~   84 (139)
                      |...+.++.|  +++.|+.++.++   .|++||+.+++.. .+..|...+.+++|+|+++.|+ +++.++.  |.+||+.
T Consensus       177 ~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~  255 (415)
T 2hqs_A          177 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA  255 (415)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT
T ss_pred             CCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC
Confidence            4445555554  999999988775   9999999988765 5667888899999999999887 6666655  9999998


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcC-CC--eEEEEEcCCCce
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGK-DK--TLRTWNLVKGRS  132 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~  132 (139)
                      +++... + ..+.. .+.+++|+|+|++|++++. ++  .|.+||+.+++.
T Consensus       256 ~~~~~~-l-~~~~~-~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~  303 (415)
T 2hqs_A          256 SGQIRQ-V-TDGRS-NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP  303 (415)
T ss_dssp             TCCEEE-C-CCCSS-CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC
T ss_pred             CCCEEe-C-cCCCC-cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE
Confidence            877633 3 23343 3899999999998888775 44  688889987764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.71  E-value=1.4e-15  Score=105.23  Aligned_cols=117  Identities=8%  Similarity=0.041  Sum_probs=99.7

Q ss_pred             EEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe--CCceEEEEEEe
Q psy11518         17 VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV--GSWQLEKLFKK   94 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~--~~~~~~~~~~~   94 (139)
                      +..+.+++.+++++..+++|.+||..+++.+.++..+.. +..++|+|+++++++++.|+.|.+||+  .+++.+..+. 
T Consensus       142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-  219 (543)
T 1nir_A          142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-  219 (543)
T ss_dssp             CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-
T ss_pred             ccccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-
Confidence            334556788999999999999999999999999884433 889999999999999999999999999  7888877773 


Q ss_pred             CCCCcceeEEEEcc----CCcEEEEEcC-CCeEEEEEcCCCceeEEEe
Q psy11518         95 AHKGTAVNHISIHP----SGKLALSVGK-DKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        95 ~~~~~~v~~~~~~~----~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~  137 (139)
                       .... +.+++|+|    +|+++++++. ++.|.+||..+++.+..+.
T Consensus       220 -~g~~-p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~  265 (543)
T 1nir_A          220 -IGIE-ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS  265 (543)
T ss_dssp             -CCSE-EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE
T ss_pred             -cCCC-cceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeec
Confidence             2333 89999999    9999998884 8999999999999887765

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.66  E-value=5.7e-15  Score=99.10  Aligned_cols=106  Identities=12%  Similarity=0.137  Sum_probs=83.6

Q ss_pred             CcEEEEeCCC------CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCC---cEEEEEeCCceEEEEEEe
Q psy11518         24 SKLAASSGAD------ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG---SIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        24 ~~~l~~~~~~------~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~~~~   94 (139)
                      +..++.++.+      +.|++||+. +.....+..|...+.+++|+|++++++.++.++   .|.+||+.+++.....  
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~--  219 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--  219 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE--
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee--
Confidence            5556555543      799999986 455677888999999999999999999988775   8999999988876433  


Q ss_pred             CCCCcceeEEEEccCCcEEE-EEcCCC--eEEEEEcCCCcee
Q psy11518         95 AHKGTAVNHISIHPSGKLAL-SVGKDK--TLRTWNLVKGRSA  133 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~-~~~~d~--~i~i~d~~~~~~~  133 (139)
                      .+... +.+++|+|+|+.|+ +++.++  .|.+||+++++..
T Consensus       220 ~~~~~-~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~  260 (415)
T 2hqs_A          220 SFPRH-NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR  260 (415)
T ss_dssp             CCSSC-EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE
T ss_pred             cCCCc-ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE
Confidence            34444 89999999999887 666554  4999999987653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.63  E-value=1.7e-13  Score=89.24  Aligned_cols=120  Identities=15%  Similarity=0.111  Sum_probs=95.9

Q ss_pred             EEEecCCcEEEEeC--CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeC
Q psy11518         18 RSVAATSKLAASSG--ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA   95 (139)
Q Consensus        18 ~~~~~~~~~l~~~~--~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~   95 (139)
                      ..++++++.+++++  .++.|.+||..+++.+..+..+...+..++|+|+++++++++.++.|.+||..+++....+...
T Consensus       146 ~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~  225 (353)
T 3vgz_A          146 LVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLL  225 (353)
T ss_dssp             EEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             EEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcC
Confidence            34455888766665  5789999999999888888756666789999999999999999999999999999988777442


Q ss_pred             CC--CcceeEEEEccCCcEEEEEc-CCCeEEEEEcCCCceeEEEe
Q psy11518         96 HK--GTAVNHISIHPSGKLALSVG-KDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        96 ~~--~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ..  ...+..++|+|+++++++++ .++.|.+||+.+++.+..+.
T Consensus       226 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          226 DDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             CSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            21  22377899999999776665 45999999999998877654

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.63  E-value=1.5e-13  Score=88.81  Aligned_cols=78  Identities=9%  Similarity=0.032  Sum_probs=65.9

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         56 TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      .+..++|+|++++++++  ++.|.+||+.+++....+...  . .+.+++|+|+++++++++.++.|.+||+.+++.+..
T Consensus       242 ~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~--~-~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~  316 (337)
T 1pby_B          242 FYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP--H-SYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQ  316 (337)
T ss_dssp             CEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS--S-CCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEE
T ss_pred             ceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC--C-ceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEE
Confidence            45578999999998888  689999999999887777433  2 278899999999999999999999999999998877


Q ss_pred             Eec
Q psy11518        136 TNL  138 (139)
Q Consensus       136 ~~~  138 (139)
                      +.+
T Consensus       317 ~~~  319 (337)
T 1pby_B          317 VDL  319 (337)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            653

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.63  E-value=2.1e-13  Score=88.83  Aligned_cols=118  Identities=7%  Similarity=0.030  Sum_probs=94.0

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEe----cCCCeEEEEECCCCCEEEEec-CCCcEEEEEeCCceEEE
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITCLKFTPEGSHLISCS-DDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~~~   90 (139)
                      ....+.++++.+++++.++.|.+||..+++.+..+..    +...+..++|+|++++++.++ .++.|.+||..+++...
T Consensus       188 ~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  267 (353)
T 3vgz_A          188 TGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA  267 (353)
T ss_dssp             CCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             ceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            3445666999999999999999999999988877764    455678899999999776555 45899999999998888


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEE-cCCCeEEEEEcCCCceeEEEe
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSV-GKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .+....    ...++|+|++++++++ ..++.|.+||+.+++.+..+.
T Consensus       268 ~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~  311 (353)
T 3vgz_A          268 KVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD  311 (353)
T ss_dssp             EEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            774322    3569999999965554 479999999999998877654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.61  E-value=3.1e-13  Score=93.58  Aligned_cols=130  Identities=11%  Similarity=0.097  Sum_probs=100.9

Q ss_pred             eeEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEc--cCCceeeEEEecCCCeEEEEECC----CCCEEEEecC-C
Q psy11518          3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDM--VKRKQSGALMQHEGTITCLKFTP----EGSHLISCSD-D   75 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~--~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-d   75 (139)
                      +.+.++.. ++......++++++++++++.++.|.+||+  .+++.+.++.. ...+..++|+|    +++++++++. +
T Consensus       170 ~~~~~i~~-g~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~  247 (543)
T 1nir_A          170 KIVKVIDT-GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWP  247 (543)
T ss_dssp             CEEEEEEC-STTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred             eEEEEEec-CcccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccC
Confidence            34455543 333444556679999999999999999999  88888888874 45678999999    9999988874 8


Q ss_pred             CcEEEEEeCCceEEEEEEeC---------CCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCCceeE
Q psy11518         76 GSIAIFRVGSWQLEKLFKKA---------HKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      +.|.+||..+++.+..+...         |....+..+.++|++. ++++...++.|.+||+.+.+.+.
T Consensus       248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~  316 (543)
T 1nir_A          248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT  316 (543)
T ss_dssp             SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred             CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence            99999999999988877432         2233488999999765 56677889999999998865443

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.60  E-value=1.2e-13  Score=89.59  Aligned_cols=112  Identities=11%  Similarity=0.156  Sum_probs=81.8

Q ss_pred             EEEEecCCcEEEEeCCC-CeEEEEEcc--CCc--eeeEEEecCCCeEEEEECCCCCEEEEec-CCCcEEEEEeCCc---e
Q psy11518         17 VRSVAATSKLAASSGAD-ETVVLYDMV--KRK--QSGALMQHEGTITCLKFTPEGSHLISCS-DDGSIAIFRVGSW---Q   87 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~~-~~v~i~~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~---~   87 (139)
                      ..+++++++++++++.+ +.|.+|++.  +++  .+..+..+. .+..++|+|+++++++++ .++.|.+||+..+   .
T Consensus        42 ~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~  120 (343)
T 1ri6_A           42 PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVG  120 (343)
T ss_dssp             CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEE
T ss_pred             eEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccc
Confidence            34555689888877766 999999997  444  334454444 778999999999876555 5888999999433   3


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcCC-Cce
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLVK-GRS  132 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~-~~~  132 (139)
                      ....+  .... .+.+++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus       121 ~~~~~--~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A          121 VVDVV--EGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             EEEEE--CCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             ccccc--cCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            33333  2222 388899999999887776 899999999987 554

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.60  E-value=7.1e-13  Score=85.82  Aligned_cols=113  Identities=9%  Similarity=0.124  Sum_probs=85.2

Q ss_pred             EEEEecCCcEEEEe-CCCCeEEEEEccCCce-eeEEEecCCCeEEEEECCCCCEEEEecCCC---cEEEEEeCCceEEEE
Q psy11518         17 VRSVAATSKLAASS-GADETVVLYDMVKRKQ-SGALMQHEGTITCLKFTPEGSHLISCSDDG---SIAIFRVGSWQLEKL   91 (139)
Q Consensus        17 v~~~~~~~~~l~~~-~~~~~v~i~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~~~d~~~~~~~~~   91 (139)
                      ..+++++++.++++ ..++.|.+||+.+++. ...+..+.....+++|+|++++++++..++   .|.+||+.+++....
T Consensus        44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~  123 (331)
T 3u4y_A           44 DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST  123 (331)
T ss_dssp             EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEE
T ss_pred             eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEE
Confidence            45555688865554 4588999999999887 667776666655599999999998665553   899999999988777


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEE-cCCCe-EEEEEcCCCce
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSV-GKDKT-LRTWNLVKGRS  132 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~-i~i~d~~~~~~  132 (139)
                      +..  ... +.+++|+|++++++++ ..++. +.+|++.....
T Consensus       124 ~~~--~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~  163 (331)
T 3u4y_A          124 IPI--PYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDADGV  163 (331)
T ss_dssp             EEC--CTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCC
T ss_pred             EEC--CCC-ccceEECCCCCEEEEEecCCCceEEEEEECCCCc
Confidence            632  222 6899999999865554 55678 99999876443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.57  E-value=1.6e-13  Score=88.78  Aligned_cols=113  Identities=9%  Similarity=0.052  Sum_probs=89.6

Q ss_pred             cEEEEeCCCCeEEEEEccCCceeeEEEecCC--CeEEEEECCCCCEE-EEecCCCcEEEEEeCCceEEEEEEeCCC---C
Q psy11518         25 KLAASSGADETVVLYDMVKRKQSGALMQHEG--TITCLKFTPEGSHL-ISCSDDGSIAIFRVGSWQLEKLFKKAHK---G   98 (139)
Q Consensus        25 ~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~   98 (139)
                      +++++++.++.|.+||+.+++.+..+.....  .+..++|+|+++.+ +++..++.|.+||+.+++....+.....   .
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            5788999999999999999988877764332  46889999999765 5666788999999999988877744331   1


Q ss_pred             cceeEEEEccCCcEEEEEc------------CCCeEEEEEcCCCceeEEEe
Q psy11518         99 TAVNHISIHPSGKLALSVG------------KDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ..+..++|+|++++++++.            .++.|.+||+.+++.+..+.
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~  132 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEe
Confidence            1367899999999888885            57999999999988776554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.57  E-value=6.2e-14  Score=99.57  Aligned_cols=112  Identities=14%  Similarity=0.218  Sum_probs=87.9

Q ss_pred             EEEecCCcEEEEeCC-CC-----eEEEEEccCCceeeEEEecCC------------------------CeEEEEECCCCC
Q psy11518         18 RSVAATSKLAASSGA-DE-----TVVLYDMVKRKQSGALMQHEG------------------------TITCLKFTPEGS   67 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~-~~-----~v~i~~~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~   67 (139)
                      ..+++||+.|++++. ++     .|.+||+.+++....+..+..                        .+..++|+|+|+
T Consensus        42 ~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~  121 (741)
T 2ecf_A           42 PKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQ  121 (741)
T ss_dssp             EEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSS
T ss_pred             ceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCC
Confidence            344559999999887 87     999999999887666654432                        278899999999


Q ss_pred             EEEEecCCCcEEEEEeCCc---eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         68 HLISCSDDGSIAIFRVGSW---QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        68 ~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ++++++. +.|.+||+.++   .... + ..+.. .+..++|+|||++|+.++. +.|.+||+.+++...
T Consensus       122 ~l~~~~~-~~i~~~d~~~~~~~~~~~-l-~~~~~-~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          122 RLLFPLG-GELYLYDLKQEGKAAVRQ-L-THGEG-FATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQ  186 (741)
T ss_dssp             EEEEEET-TEEEEEESSSCSTTSCCB-C-CCSSS-CEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EEEEEeC-CcEEEEECCCCCcceEEE-c-ccCCc-ccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEE
Confidence            9998876 89999999887   4432 2 23333 3899999999999998874 589999999876654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.56  E-value=3.3e-13  Score=87.42  Aligned_cols=112  Identities=7%  Similarity=0.059  Sum_probs=86.6

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec-CCCcEEEEEeCCceE-EEEEEeCCCCcc
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS-DDGSIAIFRVGSWQL-EKLFKKAHKGTA  100 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~~~~-~~~~~~~~~~~~  100 (139)
                      .+..++++..++.|.+||+.+++.+..+..+...+ .++|+|+++++++++ .++.|.+||..+++. ...+. .+. .+
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~-~~   85 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ-EGQ-SS   85 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE-ECS-SC
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc-cCC-CC
Confidence            34557888899999999999999888877666666 999999999666554 488999999998886 55442 222 32


Q ss_pred             eeEEEEccCCcEEEEEcCCC---eEEEEEcCCCceeEEEe
Q psy11518        101 VNHISIHPSGKLALSVGKDK---TLRTWNLVKGRSAYITN  137 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~  137 (139)
                      ..+++|+|++++++++..++   .|.+||+.+++.+..+.
T Consensus        86 ~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~  125 (331)
T 3u4y_A           86 MADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP  125 (331)
T ss_dssp             CCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE
T ss_pred             ccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE
Confidence            34499999999998655553   89999999998876654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.56  E-value=8.7e-13  Score=85.45  Aligned_cols=110  Identities=15%  Similarity=0.213  Sum_probs=78.9

Q ss_pred             EEEecCCcEEEEe-CCCCeEEEEEcc---CCceeeEEEecCCCeEEEEECCCCCEEEEec-CCCcEEEEEeCC-ceEEE-
Q psy11518         18 RSVAATSKLAASS-GADETVVLYDMV---KRKQSGALMQHEGTITCLKFTPEGSHLISCS-DDGSIAIFRVGS-WQLEK-   90 (139)
Q Consensus        18 ~~~~~~~~~l~~~-~~~~~v~i~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~~-~~~~~-   90 (139)
                      .+++++++.++++ ..++.|.+||+.   ..+....+..+ ..+.+++|+|+++++++++ .++.|.+||+.+ ++... 
T Consensus        89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~  167 (343)
T 1ri6_A           89 ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ  167 (343)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred             EEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence            3455588877555 458899999994   33444444433 4578999999999887776 889999999987 65432 


Q ss_pred             ---EEEeCCCCcceeEEEEccCCcEEEEE-cCCCeEEEEEcCC
Q psy11518         91 ---LFKKAHKGTAVNHISIHPSGKLALSV-GKDKTLRTWNLVK  129 (139)
Q Consensus        91 ---~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~  129 (139)
                         .. ....+..+..++|+|++++++++ ..++.+.+||+..
T Consensus       168 ~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          168 DPAEV-TTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             EEEEE-ECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             ccccc-ccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence               22 22233348889999999976554 5789999999953

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.54  E-value=4.5e-13  Score=84.88  Aligned_cols=115  Identities=17%  Similarity=0.181  Sum_probs=85.2

Q ss_pred             EEecCCcEEE-EeCCCCeEEEEEccC-CceeeEEEecCCCeEEEEECCCCCEEEEec-CCCcEEEEEeC-CceEEEEEEe
Q psy11518         19 SVAATSKLAA-SSGADETVVLYDMVK-RKQSGALMQHEGTITCLKFTPEGSHLISCS-DDGSIAIFRVG-SWQLEKLFKK   94 (139)
Q Consensus        19 ~~~~~~~~l~-~~~~~~~v~i~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~-~~~~~~~~~~   94 (139)
                      +++++++.++ ++..++.+.+|++.. ......+..+...+.++.|+|+++.++.++ .++.+.+|++. .+.....+ .
T Consensus       135 ~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~  213 (297)
T 2ojh_A          135 GWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-T  213 (297)
T ss_dssp             EECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC-C
T ss_pred             EECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE-e
Confidence            4455888776 777889999999643 233455566778899999999999887655 58899999986 34444444 2


Q ss_pred             CCCCcceeEEEEccCCcEEEEEcCC-----------CeEEEEEcCCCceeEE
Q psy11518         95 AHKGTAVNHISIHPSGKLALSVGKD-----------KTLRTWNLVKGRSAYI  135 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~  135 (139)
                      .+. ..+..++|+|++++|++++.+           +.|.+||+.+++....
T Consensus       214 ~~~-~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          214 DSA-YGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             CCS-EEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred             cCC-cccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence            333 348899999999999888765           5699999998876443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.54  E-value=1.5e-13  Score=89.35  Aligned_cols=111  Identities=11%  Similarity=0.105  Sum_probs=88.7

Q ss_pred             ecCCcEEEEeCCCCeEEEEEccCCceeeEEEecC-CCeEEEEECCCCCEE-EEecCCCcEEEEEeCCceEEEEEEeCCC-
Q psy11518         21 AATSKLAASSGADETVVLYDMVKRKQSGALMQHE-GTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSWQLEKLFKKAHK-   97 (139)
Q Consensus        21 ~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~-   97 (139)
                      ..++.++++++.++.|.+||+.+++.+..+..+. ..+..++|+|+++.+ ++...++.|.+||+.+++....+...+. 
T Consensus         8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~   87 (349)
T 1jmx_B            8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP   87 (349)
T ss_dssp             CTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST
T ss_pred             cCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc
Confidence            3477889999999999999999998888777543 146789999999865 4666789999999999988777743332 


Q ss_pred             ---CcceeEEEEccCCcEEEEEcCC------------CeEEEEEcCCCc
Q psy11518         98 ---GTAVNHISIHPSGKLALSVGKD------------KTLRTWNLVKGR  131 (139)
Q Consensus        98 ---~~~v~~~~~~~~~~~l~~~~~d------------~~i~i~d~~~~~  131 (139)
                         ...+..++|+|+++++++++.+            +.|.+||+.+++
T Consensus        88 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B           88 GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence               2236789999999999988865            899999998743

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.54  E-value=8.9e-14  Score=96.59  Aligned_cols=112  Identities=11%  Similarity=0.075  Sum_probs=89.6

Q ss_pred             eEEEEecCCcEEEEeCCC----CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCC--cEEEEEeCCceEE
Q psy11518         16 SVRSVAATSKLAASSGAD----ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG--SIAIFRVGSWQLE   89 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~   89 (139)
                      .-..+++||+.++.++.+    +.|.+||+.+++.. .+..|...+..++|+|+|+.++++..++  .|.+||+.+++..
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            334556799999987766    78999999887654 6677888899999999999999888888  8999999988877


Q ss_pred             EEEEeCCCCcceeEEE--------EccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         90 KLFKKAHKGTAVNHIS--------IHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                       .+ ..+... +..++        |+|||.++++++.|+.+++|++  ++.+
T Consensus       232 -~~-~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~  278 (582)
T 3o4h_A          232 -DL-ELPSKD-FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERV  278 (582)
T ss_dssp             -EC-CCSCSH-HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEE
T ss_pred             -Ec-cCCCcC-hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCee
Confidence             43 333333 55556        9999988899999999999999  5443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.54  E-value=1.1e-14  Score=103.13  Aligned_cols=113  Identities=8%  Similarity=0.075  Sum_probs=87.3

Q ss_pred             ecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCC---CeEEEEECCCCCEEEEecCC---------CcEEEEEeCCceE
Q psy11518         21 AATSKLAASSGADETVVLYDMVKRKQSGALMQHEG---TITCLKFTPEGSHLISCSDD---------GSIAIFRVGSWQL   88 (139)
Q Consensus        21 ~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~~~d~~~~~~   88 (139)
                      +++|+++++ +.|+.|++||+.+++....+..|..   .+..++|+|+|+++++++.+         +.+.+||+.+++.
T Consensus        25 spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~  103 (723)
T 1xfd_A           25 ISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP  103 (723)
T ss_dssp             SSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC
T ss_pred             cCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce
Confidence            348887765 7899999999999988777776654   38999999999999988764         6788999998876


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ............+..++|+|||++|+.++. +.|++||+.+++....
T Consensus       104 ~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~  149 (723)
T 1xfd_A          104 QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRV  149 (723)
T ss_dssp             EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEE
T ss_pred             EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEE
Confidence            322211122223788999999999998886 7999999998876543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.54  E-value=4.4e-13  Score=98.69  Aligned_cols=114  Identities=9%  Similarity=0.125  Sum_probs=92.4

Q ss_pred             eEEEEec-CCcEEEEeCCCCeEE-EEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         16 SVRSVAA-TSKLAASSGADETVV-LYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        16 ~v~~~~~-~~~~l~~~~~~~~v~-i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .+..+.| +++.++.++.+..+. +|++.+++... +..|...+..++|+|+++++++++.++.|.+||+.+++..... 
T Consensus       339 ~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~~~-l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~-  416 (1045)
T 1k32_A          339 RYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE-  416 (1045)
T ss_dssp             EEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-
T ss_pred             eEEeeeEcCCCeEEEEECCCceEEEEECCCCCceE-ecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEec-
Confidence            5556666 677888888788888 99987775443 3377788999999999999999999999999999998877665 


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCC----------eEEEEEcCCCce
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDK----------TLRTWNLVKGRS  132 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~----------~i~i~d~~~~~~  132 (139)
                      ..+... +.+++|+|||++|++++.++          .|++||+.+++.
T Consensus       417 ~~~~~~-v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~  464 (1045)
T 1k32_A          417 RSREAM-ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI  464 (1045)
T ss_dssp             ECSSSC-CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred             cCCCCC-ccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence            344444 88999999999998887644          899999998763

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.54  E-value=1.8e-12  Score=84.26  Aligned_cols=78  Identities=14%  Similarity=0.075  Sum_probs=65.0

Q ss_pred             CeEEEEECC-CCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         56 TITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        56 ~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      .+..++|+| ++++++++  ++.|.+||+.+++....+...+  . +.+++|+|++++|++++.++.|.+||+++++.+.
T Consensus       256 ~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~--~-~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          256 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH--T-YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             CEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS--C-CCEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             cceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC--C-ccceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence            345677889 99998888  7899999999998887774332  2 7789999999988888889999999999999887


Q ss_pred             EEec
Q psy11518        135 ITNL  138 (139)
Q Consensus       135 ~~~~  138 (139)
                      .+.+
T Consensus       331 ~~~~  334 (349)
T 1jmx_B          331 NIKL  334 (349)
T ss_dssp             EEEC
T ss_pred             eeec
Confidence            7654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.52  E-value=2.5e-13  Score=96.09  Aligned_cols=113  Identities=12%  Similarity=0.168  Sum_probs=85.4

Q ss_pred             EEEecCCcEEEEeCCCCeEEEEEccC-----CceeeEEEecCCC--------------eEEEEECCCCCEEEEec-----
Q psy11518         18 RSVAATSKLAASSGADETVVLYDMVK-----RKQSGALMQHEGT--------------ITCLKFTPEGSHLISCS-----   73 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~v~i~~~~~-----~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~-----   73 (139)
                      .+++++|+.|+.+ .++.|.+||+.+     ++.......+...              +.++.|+|++++|+.++     
T Consensus       126 ~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~  204 (706)
T 2z3z_A          126 LDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSM  204 (706)
T ss_dssp             CEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTT
T ss_pred             CcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCC
Confidence            4566699999885 679999999988     7655433333332              47899999999999886     


Q ss_pred             ----------------------------CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCC-----
Q psy11518         74 ----------------------------DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK-----  120 (139)
Q Consensus        74 ----------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----  120 (139)
                                                  .+..|.+||+.+++.............+.+++|+|||++|++++.++     
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  284 (706)
T 2z3z_A          205 VKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC  284 (706)
T ss_dssp             SCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred             CceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence                                        34679999999887655442222333489999999999999887665     


Q ss_pred             eEEEEEcCCCc
Q psy11518        121 TLRTWNLVKGR  131 (139)
Q Consensus       121 ~i~i~d~~~~~  131 (139)
                      .|.+||+.+++
T Consensus       285 ~v~~~d~~~g~  295 (706)
T 2z3z_A          285 KVNAYDAETGR  295 (706)
T ss_dssp             EEEEEETTTCC
T ss_pred             EEEEEECCCCc
Confidence            89999999983

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.52  E-value=1.2e-11  Score=80.68  Aligned_cols=113  Identities=13%  Similarity=0.183  Sum_probs=78.5

Q ss_pred             EEEEecCCcEEEEeC-CCCeEEEEEccC-Cc--eeeEEEec---------CCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518         17 VRSVAATSKLAASSG-ADETVVLYDMVK-RK--QSGALMQH---------EGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        17 v~~~~~~~~~l~~~~-~~~~v~i~~~~~-~~--~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      -.++++++++|++++ .++.|.+|++.. +.  .+..+...         ...+.+++|+|+++.+++...++.|.+|++
T Consensus        90 ~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~  169 (347)
T 3hfq_A           90 YVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV  169 (347)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence            345566899887776 789999999963 22  22333221         124788999999996677777889999999


Q ss_pred             C-CceEEEEEE-eCCCCcceeEEEEccCCcEEEE-EcCCCeEEEEEcCC
Q psy11518         84 G-SWQLEKLFK-KAHKGTAVNHISIHPSGKLALS-VGKDKTLRTWNLVK  129 (139)
Q Consensus        84 ~-~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~  129 (139)
                      . ++....... ....+..+..++|+|+|+++++ ...++.+.+|++..
T Consensus       170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            8 554432221 2223323788999999996655 56789999999874

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.52  E-value=3.3e-12  Score=83.80  Aligned_cols=114  Identities=17%  Similarity=0.224  Sum_probs=80.0

Q ss_pred             EEEecCCcEEEEeC-CCCeEEEEEccCCce--eeEEE---ecCCCeEEEEECCCCCEEEEecC--CCcEEEEEeC--Cce
Q psy11518         18 RSVAATSKLAASSG-ADETVVLYDMVKRKQ--SGALM---QHEGTITCLKFTPEGSHLISCSD--DGSIAIFRVG--SWQ   87 (139)
Q Consensus        18 ~~~~~~~~~l~~~~-~~~~v~i~~~~~~~~--~~~~~---~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~--~~~   87 (139)
                      ..++++++++++++ .++.|.+|++.+++.  +..+.   .+......++|+|++++++++..  ++.|.+|++.  ++.
T Consensus       216 ~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~  295 (361)
T 3scy_A          216 LIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT  295 (361)
T ss_dssp             EEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred             EEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence            44555888776665 689999999987744  22232   23345679999999998866555  4889999996  344


Q ss_pred             E--EEEEEeCCCCcceeEEEEccCCcEEEEEc-CCCeEEEE--EcCCCceeE
Q psy11518         88 L--EKLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRTW--NLVKGRSAY  134 (139)
Q Consensus        88 ~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~--d~~~~~~~~  134 (139)
                      .  ...+  .. +..+.+++|+|++++|++++ .++.|.+|  |..+++...
T Consensus       296 ~~~~~~~--~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          296 LTKVGYQ--LT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             EEEEEEE--EC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEeeEe--cC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            3  3333  22 33478999999999888877 67899996  555666543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.52  E-value=3.7e-12  Score=83.13  Aligned_cols=114  Identities=10%  Similarity=0.195  Sum_probs=81.3

Q ss_pred             EEEecCCcEEEEeCC---CCeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEec-CCCcEEEEEeC-Cce--E
Q psy11518         18 RSVAATSKLAASSGA---DETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCS-DDGSIAIFRVG-SWQ--L   88 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~---~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~-~~~--~   88 (139)
                      .+++++++ +++++.   ++.|.+|++.+++  .+..+..+...+..++|+|+++++++++ .++.+.+|++. ++.  .
T Consensus        45 ~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~  123 (347)
T 3hfq_A           45 LALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTL  123 (347)
T ss_dssp             EEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEE
T ss_pred             EEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeee
Confidence            45566888 554443   6899999997765  3444455777788999999999888776 67899999996 333  2


Q ss_pred             EEEEEeCCC-------CcceeEEEEccCCcEEEEEcCCCeEEEEEcC-CCce
Q psy11518         89 EKLFKKAHK-------GTAVNHISIHPSGKLALSVGKDKTLRTWNLV-KGRS  132 (139)
Q Consensus        89 ~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~  132 (139)
                      +..+.....       ...+.+++|+|+++++++...++.|.+|++. +++.
T Consensus       124 ~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~  175 (347)
T 3hfq_A          124 TDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQL  175 (347)
T ss_dssp             EEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCE
T ss_pred             cceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcE
Confidence            333311111       1237789999999977777778999999998 5543

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.51  E-value=4e-13  Score=95.49  Aligned_cols=100  Identities=15%  Similarity=0.107  Sum_probs=77.2

Q ss_pred             EEEecCCcEEEEeCCCCeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeC
Q psy11518         18 RSVAATSKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA   95 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~   95 (139)
                      .++++||++|++++. +.|.+||+.++.  ....+..|...+..++|+|+|++++.++ ++.|.+||+.+++..... ..
T Consensus       114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~-~~  190 (741)
T 2ecf_A          114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLT-AD  190 (741)
T ss_dssp             CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECC-CC
T ss_pred             eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEec-cC
Confidence            455569999998886 999999998873  4455667778899999999999998887 458999999988766544 22


Q ss_pred             CCCc---------------ceeEEEEccCCcEEEEEcCCC
Q psy11518         96 HKGT---------------AVNHISIHPSGKLALSVGKDK  120 (139)
Q Consensus        96 ~~~~---------------~v~~~~~~~~~~~l~~~~~d~  120 (139)
                      +...               .+..++|+|||++|++++.|+
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             CccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            2211               136799999999999987665

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.51  E-value=6.5e-13  Score=97.84  Aligned_cols=116  Identities=9%  Similarity=0.001  Sum_probs=92.6

Q ss_pred             cceeeEEEE--ecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCC----------cEE
Q psy11518         12 SHTASVRSV--AATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG----------SIA   79 (139)
Q Consensus        12 ~~~~~v~~~--~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----------~i~   79 (139)
                      ++...+..+  +++++.|++++.++.|++||+.+++.......|...+..++|+|++++++.++.++          .|.
T Consensus       376 ~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~  455 (1045)
T 1k32_A          376 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  455 (1045)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEE
Confidence            343444444  45999999999999999999999988877778888899999999999998776644          899


Q ss_pred             EEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         80 IFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      +||+.+++ ...+ ..+... +..++|+|+|+.|+.++.++...+|+....
T Consensus       456 l~d~~~g~-~~~l-~~~~~~-~~~~~~spdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          456 VYDMEGRK-IFAA-TTENSH-DYAPAFDADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             EEETTTTE-EEEC-SCSSSB-EEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             EEECCCCc-EEEe-eCCCcc-cCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence            99999887 3333 334333 788999999999999998888888876543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.50  E-value=1.6e-12  Score=82.27  Aligned_cols=111  Identities=10%  Similarity=0.064  Sum_probs=79.8

Q ss_pred             ceeeEEEEe--cCCcEEEEeCCCCeEEEEEccC-CceeeEEEec-CCCeEEEEECCCCCEEEEec--CCCcEEEEEe--C
Q psy11518         13 HTASVRSVA--ATSKLAASSGADETVVLYDMVK-RKQSGALMQH-EGTITCLKFTPEGSHLISCS--DDGSIAIFRV--G   84 (139)
Q Consensus        13 ~~~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~--~   84 (139)
                      +...+.++.  ++++++++++ ++.|.+||+.+ ++.......+ ...+.+++|+|++++++.++  .++...+|.+  .
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~  118 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPST  118 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETT
T ss_pred             CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECC
Confidence            344455555  4899998886 78999999998 7766655555 36778999999999999888  3345555554  4


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEE-EEcCCCeEEEEEcC
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLAL-SVGKDKTLRTWNLV  128 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~  128 (139)
                      ++.. ..+  ..... +..++|+|+++.++ +++.++.+.+|++.
T Consensus       119 ~~~~-~~~--~~~~~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~  159 (297)
T 2ojh_A          119 GGTP-RLM--TKNLP-SYWHGWSPDGKSFTYCGIRDQVFDIYSMD  159 (297)
T ss_dssp             CCCC-EEC--CSSSS-EEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             CCce-EEe--ecCCC-ccceEECCCCCEEEEEECCCCceEEEEEE
Confidence            4442 222  22223 88899999999877 67788989999853

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.48  E-value=1.2e-13  Score=98.00  Aligned_cols=111  Identities=13%  Similarity=0.124  Sum_probs=85.1

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCC---CeEEEEECCCCCEEEEecC---------CCcEEEEEeCCc
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEG---TITCLKFTPEGSHLISCSD---------DGSIAIFRVGSW   86 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------d~~i~~~d~~~~   86 (139)
                      .+.+++++++++ .|+.|++||+.+++....+..+..   .+.+++|||+|++++.++.         ++.|.+||+.++
T Consensus        22 ~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g  100 (719)
T 1z68_A           22 NWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNG  100 (719)
T ss_dssp             EESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT
T ss_pred             EECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCC
Confidence            455588655554 689999999999987776665543   3789999999999988765         689999999988


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      +.......  .. .+..++|+|||+.|+.+. ++.|++||+.+++...
T Consensus       101 ~~~~~~~l--~~-~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~  144 (719)
T 1z68_A          101 EFVRGNEL--PR-PIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ  144 (719)
T ss_dssp             EECCSSCC--CS-SBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred             ccccceec--Cc-ccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE
Confidence            76211111  12 378899999999999886 7899999998876543

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.46  E-value=2.7e-13  Score=96.01  Aligned_cols=100  Identities=14%  Similarity=0.054  Sum_probs=74.2

Q ss_pred             EEEEecCCcEEEEeCCC---------CeEEEEEccCCceeeEEE---ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC
Q psy11518         17 VRSVAATSKLAASSGAD---------ETVVLYDMVKRKQSGALM---QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~~---------~~v~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~   84 (139)
                      -..+++||++|++++.+         +.+.+||+.+++. ..+.   .|...+..++|+|+|+.++.++. +.|.+||+.
T Consensus        65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~  142 (723)
T 1xfd_A           65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHV  142 (723)
T ss_dssp             EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSS
T ss_pred             eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECC
Confidence            34556699999988754         7899999988875 2332   34445788999999999998875 789999998


Q ss_pred             CceEEEEEEeCCCCc-----------------ceeEEEEccCCcEEEEEcCC
Q psy11518         85 SWQLEKLFKKAHKGT-----------------AVNHISIHPSGKLALSVGKD  119 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~-----------------~v~~~~~~~~~~~l~~~~~d  119 (139)
                      +++...... .+...                 .+.+++|+|||+.|++++.|
T Consensus       143 ~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          143 GKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             SSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred             CCceEEEec-CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence            887665552 22211                 13789999999999988754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.46  E-value=2e-12  Score=89.88  Aligned_cols=111  Identities=18%  Similarity=0.140  Sum_probs=83.9

Q ss_pred             eEEEEecCCc--EEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC----CcEEEEEeCCceEE
Q psy11518         16 SVRSVAATSK--LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD----GSIAIFRVGSWQLE   89 (139)
Q Consensus        16 ~v~~~~~~~~--~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~   89 (139)
                      .+.+++++++  .++++..++ +.+||+.+++.......+ .  ..++|+|+|++++.++.+    +.|.+||+.+++..
T Consensus       113 ~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~  188 (582)
T 3o4h_A          113 RILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR  188 (582)
T ss_dssp             EEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE
T ss_pred             eeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce
Confidence            3567778664  444555544 559999888765544433 3  788999999999977766    67999999888765


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCC--eEEEEEcCCCcee
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDK--TLRTWNLVKGRSA  133 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~  133 (139)
                      . + ..+... +..++|+|||++|+++..++  .|++||+.+++..
T Consensus       189 ~-l-~~~~~~-~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~  231 (582)
T 3o4h_A          189 V-F-DSGEGS-FSSASISPGMKVTAGLETAREARLVTVDPRDGSVE  231 (582)
T ss_dssp             E-E-CCSSCE-EEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred             E-e-ecCCCc-cccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence            3 3 344444 89999999999999888888  8999999988776

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.45  E-value=5.6e-12  Score=83.84  Aligned_cols=105  Identities=13%  Similarity=0.151  Sum_probs=87.0

Q ss_pred             EEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCC
Q psy11518         17 VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH   96 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~   96 (139)
                      +..+.|++..|+++ .++.|++||+.+.........|...+..+.+.+.  .++++..||.|.+||+.++.....     
T Consensus        90 V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~-----  161 (388)
T 1xip_A           90 VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL-----  161 (388)
T ss_dssp             EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE-----
T ss_pred             eeEEEECCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccc-----
Confidence            77888888999998 8899999999887766677788888888887754  388889999999999998776432     


Q ss_pred             CCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         97 KGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        97 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      . ..|++++|+|+|  ++.|..||.+++|+...++.
T Consensus       162 ~-~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~  194 (388)
T 1xip_A          162 A-QNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEM  194 (388)
T ss_dssp             E-ESEEEEEECSSE--EEEEETTSCEEEEEEETTEE
T ss_pred             c-CCceEEEEcCCc--eEEEEcCCcEEEEcCCCccc
Confidence            1 239999999999  67888999999998877664

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.42  E-value=1.1e-10  Score=76.60  Aligned_cols=114  Identities=12%  Similarity=0.221  Sum_probs=78.4

Q ss_pred             EEEecCCcEEE-EeCCCCeEEEEEccCCce------e------eE-EEecCCCeEEEEECCCCCEEEEec-CCCcEEEEE
Q psy11518         18 RSVAATSKLAA-SSGADETVVLYDMVKRKQ------S------GA-LMQHEGTITCLKFTPEGSHLISCS-DDGSIAIFR   82 (139)
Q Consensus        18 ~~~~~~~~~l~-~~~~~~~v~i~~~~~~~~------~------~~-~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d   82 (139)
                      .++++++++++ +...++.|.+|++.....      +      .. ...+......++|+|+++++++++ .++.|.+||
T Consensus       160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~  239 (361)
T 3scy_A          160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFR  239 (361)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEE
Confidence            45566888654 555689999999875432      1      11 123445678999999999887665 689999999


Q ss_pred             eCCceEEEE--EEe-CCCCcceeEEEEccCCcEEEEEcC--CCeEEEEEcC--CCc
Q psy11518         83 VGSWQLEKL--FKK-AHKGTAVNHISIHPSGKLALSVGK--DKTLRTWNLV--KGR  131 (139)
Q Consensus        83 ~~~~~~~~~--~~~-~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~--~~~  131 (139)
                      +.++.....  +.. ......+..++|+|+|++|+++..  ++.|.+|++.  +++
T Consensus       240 ~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~  295 (361)
T 3scy_A          240 YADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGT  295 (361)
T ss_dssp             EETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCC
T ss_pred             ecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCc
Confidence            987765332  211 111122679999999998866654  5899999995  455

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.42  E-value=7.1e-11  Score=75.17  Aligned_cols=114  Identities=15%  Similarity=0.192  Sum_probs=84.4

Q ss_pred             eEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEec--CCCeEEEEECCCCCEEEEecCCC-cEEEEEeCCceEEE
Q psy11518         16 SVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQH--EGTITCLKFTPEGSHLISCSDDG-SIAIFRVGSWQLEK   90 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~-~i~~~d~~~~~~~~   90 (139)
                      ....+.+  +++++++...++.|.+||. .++.+..+..+  ...+..++++++++++++...++ .|.+||. +++.+.
T Consensus       165 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~  242 (286)
T 1q7f_A          165 FPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLIS  242 (286)
T ss_dssp             SEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEE
T ss_pred             CcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEE
Confidence            3445554  7888888788899999997 45555555433  35678999999999888888775 9999995 456666


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      .+........+.+++++|+++++++ +.++.|++|++....+
T Consensus       243 ~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~~p  283 (286)
T 1q7f_A          243 ALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP  283 (286)
T ss_dssp             EEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             EEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccccc
Confidence            6644333333778999999987777 5689999999876554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.41  E-value=3e-11  Score=77.07  Aligned_cols=110  Identities=12%  Similarity=0.045  Sum_probs=90.8

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecC-CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHE-GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                      .+++|++++.++.|.+||.++++.+..+..+. ..+.++.++|+|+++++  .++.|..||. +++.++.+...... .+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~~~-~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPAGC-EM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCTTC-EE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCCCc-cc
Confidence            46789999999999999999999999998765 46789999999999883  4677999998 79999988543223 38


Q ss_pred             eEEEEccCCcEEEEEcC-CCeEEEEEcCCCceeEEEe
Q psy11518        102 NHISIHPSGKLALSVGK-DKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~  137 (139)
                      .++.+.++|+++++.+. ++.+..+|. +++.+..+.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~  115 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTE  115 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEe
Confidence            88999999999999887 788888886 777776654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.40  E-value=6.2e-12  Score=89.01  Aligned_cols=117  Identities=15%  Similarity=0.159  Sum_probs=86.0

Q ss_pred             EEEEecCCcEEEEeC---------------------------------CCCeEEEEEccCCceeeEEE--ecCCCeEEEE
Q psy11518         17 VRSVAATSKLAASSG---------------------------------ADETVVLYDMVKRKQSGALM--QHEGTITCLK   61 (139)
Q Consensus        17 v~~~~~~~~~l~~~~---------------------------------~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~   61 (139)
                      ...+++||++|++++                                 .+..|.+||+.+++......  .|...+..++
T Consensus       185 ~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  264 (706)
T 2z3z_A          185 GTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLS  264 (706)
T ss_dssp             SEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEE
T ss_pred             eEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEE
Confidence            345566999999886                                 45789999998887544332  4566789999


Q ss_pred             ECCCCCEEEEecCCC-----cEEEEEeCCc-eEEEEEEeCCCC--cceeEEEEcc--CCcEEEEEcCCCeEEEEEcC-CC
Q psy11518         62 FTPEGSHLISCSDDG-----SIAIFRVGSW-QLEKLFKKAHKG--TAVNHISIHP--SGKLALSVGKDKTLRTWNLV-KG  130 (139)
Q Consensus        62 ~~~~~~~l~~~~~d~-----~i~~~d~~~~-~~~~~~~~~~~~--~~v~~~~~~~--~~~~l~~~~~d~~i~i~d~~-~~  130 (139)
                      |+|+++.+++++.++     .|.+||+.++ ............  ..+..++|+|  +|+++++++.|+.+++|++. ++
T Consensus       265 ~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~  344 (706)
T 2z3z_A          265 WSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG  344 (706)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTS
T ss_pred             EECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCC
Confidence            999999998877665     8999999988 443333222221  1246789999  99999999999999999876 44


Q ss_pred             cee
Q psy11518        131 RSA  133 (139)
Q Consensus       131 ~~~  133 (139)
                      +.+
T Consensus       345 ~~~  347 (706)
T 2z3z_A          345 RLI  347 (706)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.40  E-value=9.1e-13  Score=93.47  Aligned_cols=99  Identities=14%  Similarity=0.144  Sum_probs=72.9

Q ss_pred             EEEEecCCcEEEEeCC---------CCeEEEEEccCCcee--eEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         17 VRSVAATSKLAASSGA---------DETVVLYDMVKRKQS--GALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~---------~~~v~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ...+++||++|+.++.         ++.|.+||+.+++.+  ..+   ...+..++|+|+|+.++.+. ++.|++||+.+
T Consensus        64 ~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~  139 (719)
T 1z68_A           64 NYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG  139 (719)
T ss_dssp             EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred             eEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCC
Confidence            4455669999998876         789999999988762  222   24578899999999999875 77999999988


Q ss_pred             ceEEEEEEeCCCCc----------------ceeEEEEccCCcEEEEEcCC
Q psy11518         86 WQLEKLFKKAHKGT----------------AVNHISIHPSGKLALSVGKD  119 (139)
Q Consensus        86 ~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~~d  119 (139)
                      ++........+...                ...+++|+|||++|++++.|
T Consensus       140 g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          140 DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred             CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence            77654331222111                12479999999999988754

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.39  E-value=8.4e-11  Score=77.50  Aligned_cols=101  Identities=14%  Similarity=0.176  Sum_probs=72.6

Q ss_pred             CCCeEEEEEcc-CCceeeEEE----ecCCCeEEEEECCCCCEEEEec-CCCcEEEEEeC-CceEEE--EEEeCCCCccee
Q psy11518         32 ADETVVLYDMV-KRKQSGALM----QHEGTITCLKFTPEGSHLISCS-DDGSIAIFRVG-SWQLEK--LFKKAHKGTAVN  102 (139)
Q Consensus        32 ~~~~v~i~~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~-~d~~i~~~d~~-~~~~~~--~~~~~~~~~~v~  102 (139)
                      .++.+.+|++. .++....+.    .+...+.+++|+|+|+++++++ .++.|.+||+. +++...  .+.....+..+.
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            68999999997 455444333    2456789999999999887665 46789999998 676533  222111123388


Q ss_pred             EEEEccCCcEEEEEcC-CCeEEEEEcC--CCce
Q psy11518        103 HISIHPSGKLALSVGK-DKTLRTWNLV--KGRS  132 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~-d~~i~i~d~~--~~~~  132 (139)
                      .++|+|+|++++++++ ++.|.+|++.  +++.
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~  229 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMP  229 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence            9999999998887764 7899999875  4554

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.37  E-value=2.9e-12  Score=91.44  Aligned_cols=110  Identities=12%  Similarity=0.087  Sum_probs=85.0

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCC-----eEEEEECCCCCEEEEecCC---------CcEEEEEeC
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGT-----ITCLKFTPEGSHLISCSDD---------GSIAIFRVG   84 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d---------~~i~~~d~~   84 (139)
                      .+.+++++++++  |+.|++||+.+++....+..|...     ...++|||+|++++.++.+         +.+.+||+.
T Consensus        23 ~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~  100 (740)
T 4a5s_A           23 RWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN  100 (740)
T ss_dssp             EECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             EECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC
Confidence            334488888886  899999999999887777776532     2347899999999888765         567799999


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      +++....  ..+.. .+...+|+|||+.|+.+. ++.|++||+.+++...
T Consensus       101 ~~~~~~l--~~~~~-~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~  146 (740)
T 4a5s_A          101 KRQLITE--ERIPN-NTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR  146 (740)
T ss_dssp             TTEECCS--SCCCT-TEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE
T ss_pred             CCcEEEc--ccCCC-cceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE
Confidence            9876542  22333 389999999999998884 6899999998876543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.36  E-value=1.3e-10  Score=80.96  Aligned_cols=113  Identities=11%  Similarity=0.031  Sum_probs=92.4

Q ss_pred             cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC--CceEEEEEEeCCCCc
Q psy11518         22 ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG--SWQLEKLFKKAHKGT   99 (139)
Q Consensus        22 ~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~   99 (139)
                      +.+.++++...++.|.++|..+++.+.++... ..+..+.|+|+++++++++.++.|.+||+.  +++....+...  ..
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G--~~  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG--SE  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC--SE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC--CC
Confidence            34567788888999999999999998888743 356799999999999999999999999995  77777766332  22


Q ss_pred             ceeEEEEc----cCCcEEEEEcC-CCeEEEEEcCCCceeEEEec
Q psy11518        100 AVNHISIH----PSGKLALSVGK-DKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       100 ~v~~~~~~----~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~  138 (139)
                       ...++|+    |+|+++++++. ++.+.++|..+.+.+..+.+
T Consensus       242 -P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~  284 (567)
T 1qks_A          242 -ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST  284 (567)
T ss_dssp             -EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             -CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec
Confidence             6889999    69998887775 69999999999998877653

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.36  E-value=3.4e-11  Score=84.69  Aligned_cols=113  Identities=12%  Similarity=0.151  Sum_probs=81.6

Q ss_pred             EEEecCCcEEEEeCCC----------CeEEEEEccC------CceeeEEE-ecCCCeEEEEECCCCCEEEEecCC-----
Q psy11518         18 RSVAATSKLAASSGAD----------ETVVLYDMVK------RKQSGALM-QHEGTITCLKFTPEGSHLISCSDD-----   75 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~----------~~v~i~~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-----   75 (139)
                      .++++||+.|+.++.+          ..|.+||+.+      ++ ...+. .+...+..++|+|+|++|+..+.+     
T Consensus       135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~  213 (662)
T 3azo_A          135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMP  213 (662)
T ss_dssp             EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCT
T ss_pred             cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCC
Confidence            3444599999988876          5899999987      44 33444 455677888999999999877654     


Q ss_pred             ---CcEEEEEeC-Cc---eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCC--eEEEEEcCCCcee
Q psy11518         76 ---GSIAIFRVG-SW---QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK--TLRTWNLVKGRSA  133 (139)
Q Consensus        76 ---~~i~~~d~~-~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~i~d~~~~~~~  133 (139)
                         ..|.+||+. ++   ...... ..+... +..++|+|||+++++++.++  .|.+||+.+++..
T Consensus       214 ~~~~~i~~~d~~~~g~~~~~~~l~-~~~~~~-~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~  278 (662)
T 3azo_A          214 WEGTELKTARVTEDGRFADTRTLL-GGPEEA-IAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT  278 (662)
T ss_dssp             TTCEEEEEEEECTTSCEEEEEEEE-EETTBC-EEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE
T ss_pred             CCCcEEEEEEECCCCcccccEEeC-CCCCce-EcceEECCCCeEEEEECCCCCeEEEEEECCCCcee
Confidence               369999998 56   333333 333333 88999999999888888888  6777777666543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.36  E-value=1.3e-11  Score=81.46  Aligned_cols=111  Identities=11%  Similarity=0.128  Sum_probs=86.4

Q ss_pred             CCcEEEEeC------CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec----------CCCcEEEEEeCCc
Q psy11518         23 TSKLAASSG------ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS----------DDGSIAIFRVGSW   86 (139)
Q Consensus        23 ~~~~l~~~~------~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~   86 (139)
                      +++++++..      .|+.|.+||..+++.+..+..+..+  .++|+|+++++++++          .++.|.+||..+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            555555543      3679999999999988888766544  899999999998775          3567999999998


Q ss_pred             eEEEEEEeCC----CCcceeEEEEccCCcEEEEEcC--CCeEEEEEcCCCceeEE
Q psy11518         87 QLEKLFKKAH----KGTAVNHISIHPSGKLALSVGK--DKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        87 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~  135 (139)
                      +....+....    .+..+..++++|+|++++++..  ++.|.+||+.+++.+..
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~  146 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVED  146 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEE
Confidence            8887775431    1123678999999999998864  68999999999987765

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.35  E-value=4.8e-11  Score=78.66  Aligned_cols=116  Identities=13%  Similarity=0.121  Sum_probs=81.0

Q ss_pred             EEEEecCCcEEEEeCCCCeEEEEEcc-CCceeeEEEec-CCCeEEEEECCCCCE--EEEec-------------CCCcEE
Q psy11518         17 VRSVAATSKLAASSGADETVVLYDMV-KRKQSGALMQH-EGTITCLKFTPEGSH--LISCS-------------DDGSIA   79 (139)
Q Consensus        17 v~~~~~~~~~l~~~~~~~~v~i~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------------~d~~i~   79 (139)
                      -.+++++++++++++.+ .|.+|++. +++........ .+...+++|+|++++  +++++             .++.+.
T Consensus        44 ~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~  122 (365)
T 1jof_A           44 WMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN  122 (365)
T ss_dssp             EEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred             EEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEE
Confidence            34555699999888887 99999997 77654332211 123456899999994  45554             688999


Q ss_pred             EEEeC-CceEEEEEEe--CCCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcC-CCcee
Q psy11518         80 IFRVG-SWQLEKLFKK--AHKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLV-KGRSA  133 (139)
Q Consensus        80 ~~d~~-~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~-~~~~~  133 (139)
                      +|++. .++....+..  ......+.+++|+|+|++++++. .++.|.+||+. +++..
T Consensus       123 v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~  181 (365)
T 1jof_A          123 VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE  181 (365)
T ss_dssp             EEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred             EEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence            99997 4655443321  11223388999999999887765 46899999998 67653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.30  E-value=2.4e-09  Score=69.44  Aligned_cols=116  Identities=8%  Similarity=0.093  Sum_probs=84.2

Q ss_pred             EEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC----CcEEEEEeCCceEEE
Q psy11518         17 VRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD----GSIAIFRVGSWQLEK   90 (139)
Q Consensus        17 v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~   90 (139)
                      ..++.+  ++++++++..++.|.+||..+++.......+...+.+++++|+++++++...+    +.|.+||..++....
T Consensus        47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~  126 (333)
T 2dg1_A           47 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD  126 (333)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred             ccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEE
Confidence            344444  78888888889999999998887655444566789999999999988877666    679999988776553


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcC------CCeEEEEEcCCCce
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGK------DKTLRTWNLVKGRS  132 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~  132 (139)
                      .+........+.+++++|+++++++...      .+.|..+|..+++.
T Consensus       127 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~  174 (333)
T 2dg1_A          127 IIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV  174 (333)
T ss_dssp             EECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE
T ss_pred             EEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE
Confidence            4321222334889999999988777654      35677777665543

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.29  E-value=2.3e-10  Score=76.05  Aligned_cols=115  Identities=12%  Similarity=0.043  Sum_probs=92.3

Q ss_pred             cCCcEEEEeCC-----CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec----------CCCcEEEEEeCCc
Q psy11518         22 ATSKLAASSGA-----DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS----------DDGSIAIFRVGSW   86 (139)
Q Consensus        22 ~~~~~l~~~~~-----~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~   86 (139)
                      |+++.+++...     ++.|.+.|..+.+.+.++..-..+ . +.++|++++++.++          .++.|.+||..+.
T Consensus        42 pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~  119 (386)
T 3sjl_D           42 PDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL  119 (386)
T ss_dssp             CCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC
Confidence            47888777765     679999999999999888865555 4 99999999887665          3578999999999


Q ss_pred             eEEEEEEeCC-----CCcceeEEEEccCCcEEEEEcC--CCeEEEEEcCCCceeEEEec
Q psy11518         87 QLEKLFKKAH-----KGTAVNHISIHPSGKLALSVGK--DKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        87 ~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +....+....     .+.....++++|||++++++..  ++.|.++|+.+++.+..+.+
T Consensus       120 ~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v  178 (386)
T 3sjl_D          120 LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV  178 (386)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC
Confidence            9888875542     1223677999999999888763  68999999999999887754

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.26  E-value=1.7e-09  Score=70.41  Aligned_cols=117  Identities=14%  Similarity=0.136  Sum_probs=87.5

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCc-eeeEEE---------ecCCCeEEEEECC-CCCEEEEec-CCCcEEEEEeCCc
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRK-QSGALM---------QHEGTITCLKFTP-EGSHLISCS-DDGSIAIFRVGSW   86 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~-~~~~~~---------~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~~~d~~~~   86 (139)
                      ++.++++++++...++.|.+|+..... .+..+.         .+-.....++++| ++.++++.+ .++.|.+|| .++
T Consensus        97 a~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g  175 (329)
T 3fvz_A           97 SIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSG  175 (329)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTS
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCC
Confidence            344488888998999999999975442 445442         3344678999999 788888886 689999999 566


Q ss_pred             eEEEEEEeCCCC--------cceeEEEEccC-CcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         87 QLEKLFKKAHKG--------TAVNHISIHPS-GKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        87 ~~~~~~~~~~~~--------~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .....+......        ..+..++++|+ +.++++...++.|++||..+++.+..+
T Consensus       176 ~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          176 KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence            666665322211        12789999998 788888888999999999988877655

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.26  E-value=2.2e-09  Score=68.28  Aligned_cols=117  Identities=11%  Similarity=0.123  Sum_probs=85.3

Q ss_pred             EEEEe--cCCcEEEEeCCCCeEEEEEccCCceeeEEE--ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE
Q psy11518         17 VRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALM--QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        17 v~~~~--~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      ...+.  ++++++++...++.|.+||. .++.+..+.  .+...+..++++++++++++...++.|.+||.. +.....+
T Consensus       123 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~  200 (286)
T 1q7f_A          123 PRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQI  200 (286)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEE
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEE
Confidence            44444  47888888888899999996 455555554  334568999999999988888889999999974 4555555


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcCCC-eEEEEEcCCCceeEEE
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGKDK-TLRTWNLVKGRSAYIT  136 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~  136 (139)
                      ........+..++++++++++++...++ .|.+||. +++.+..+
T Consensus       201 ~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~  244 (286)
T 1q7f_A          201 GGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISAL  244 (286)
T ss_dssp             SCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEE
T ss_pred             ccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEE
Confidence            2222113388999999999888888776 9999995 45554443

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.26  E-value=1.9e-10  Score=75.92  Aligned_cols=115  Identities=12%  Similarity=0.083  Sum_probs=84.4

Q ss_pred             EEecCCcEEEEeCC-CC--eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeC
Q psy11518         19 SVAATSKLAASSGA-DE--TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA   95 (139)
Q Consensus        19 ~~~~~~~~l~~~~~-~~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~   95 (139)
                      .+++||+.|+.++. ++  .|.+||+.+++.......+...+....|+|+++.|+.++.++.|.+||+.+++....+...
T Consensus        42 ~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~  121 (388)
T 3pe7_A           42 CFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP  121 (388)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             cCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech
Confidence            35669998887776 66  5888899888776665556555556789999999999998899999999998877665322


Q ss_pred             CCCcceeEE--EEccCCcEEEEE----------------------cCCCeEEEEEcCCCceeEE
Q psy11518         96 HKGTAVNHI--SIHPSGKLALSV----------------------GKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        96 ~~~~~v~~~--~~~~~~~~l~~~----------------------~~d~~i~i~d~~~~~~~~~  135 (139)
                       ... +...  .++|++++++..                      ..+..|.+||+.+++....
T Consensus       122 -~~~-~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l  183 (388)
T 3pe7_A          122 -AEW-VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI  183 (388)
T ss_dssp             -TTE-EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE
T ss_pred             -hhc-ccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe
Confidence             222 3333  348999988742                      2447899999998876543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.26  E-value=3e-09  Score=74.18  Aligned_cols=134  Identities=10%  Similarity=0.102  Sum_probs=95.4

Q ss_pred             eeEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEcc--CCceeeEEEecCCCeEEEEEC----CCCCEEEEecC-C
Q psy11518          3 TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMV--KRKQSGALMQHEGTITCLKFT----PEGSHLISCSD-D   75 (139)
Q Consensus         3 ~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~~-d   75 (139)
                      +.+.++.. +.......++++++++++++.++.|.+||+.  +.+.+.++.... ....++|+    |+|+++++++. +
T Consensus       188 ~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~  265 (567)
T 1qks_A          188 EIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWP  265 (567)
T ss_dssp             CEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEET
T ss_pred             eEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccC
Confidence            34444543 2222345667799999999999999999995  777777776533 45789999    69998876655 6


Q ss_pred             CcEEEEEeCCceEEEEEEeCC---------CC--------------------------------------------ccee
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAH---------KG--------------------------------------------TAVN  102 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~---------~~--------------------------------------------~~v~  102 (139)
                      +.+.++|..+.+.+..+....         ..                                            ....
T Consensus       266 ~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~  345 (567)
T 1qks_A          266 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH  345 (567)
T ss_dssp             TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred             CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccccc
Confidence            889999988877766553211         00                                            0123


Q ss_pred             EEEEccCCcEEEEEc-CCCeEEEEEcCCCceeEEEec
Q psy11518        103 HISIHPSGKLALSVG-KDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ++.|+|++++++++. .++.|.++|+.+++.+..+.+
T Consensus       346 d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v  382 (567)
T 1qks_A          346 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  382 (567)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence            567999999876654 678999999999988776543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.24  E-value=8.6e-11  Score=83.96  Aligned_cols=98  Identities=12%  Similarity=0.116  Sum_probs=73.0

Q ss_pred             EEEecCCcEEEEeCCC---------CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         18 RSVAATSKLAASSGAD---------ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~---------~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ..+++||+.|+.++.+         +.+.+||+.+++.. .+..|...+...+|||+|+.+|.+ .++.|.+||+.++..
T Consensus        67 ~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~  144 (740)
T 4a5s_A           67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS  144 (740)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC
T ss_pred             eEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCce
Confidence            4667899999988875         56779999988754 355667789999999999999887 467899999988775


Q ss_pred             EEEEEeCCCCc----------------ceeEEEEccCCcEEEEEc
Q psy11518         89 EKLFKKAHKGT----------------AVNHISIHPSGKLALSVG  117 (139)
Q Consensus        89 ~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~  117 (139)
                      .......+...                ....+.|+|||+.|+.++
T Consensus       145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~  189 (740)
T 4a5s_A          145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (740)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEE
Confidence            54331122111                123589999999998875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.24  E-value=9.8e-10  Score=71.51  Aligned_cols=111  Identities=10%  Similarity=0.203  Sum_probs=84.3

Q ss_pred             EEecC-CcEEEEeCCCCeEEEEEccCCceeeEEE--ecCCCeEEEEECC------CCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         19 SVAAT-SKLAASSGADETVVLYDMVKRKQSGALM--QHEGTITCLKFTP------EGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        19 ~~~~~-~~~l~~~~~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~------~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ++.++ +.++++...++.|++|+..+++.+..+.  .+...+..++++|      +++..++...+..+.+||..+++.+
T Consensus       202 a~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~  281 (329)
T 3fvz_A          202 ALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEII  281 (329)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEE
T ss_pred             EEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEE
Confidence            34446 7788888899999999998888887774  3556788999999      3333333344558999999999988


Q ss_pred             EEEEe--CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         90 KLFKK--AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        90 ~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ..+..  .+.. .+..++++|+|.++++...++.|++|++...
T Consensus       282 ~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          282 DVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             EEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             EEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            87732  2223 3889999999988888889999999998643

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.23  E-value=2.3e-10  Score=81.28  Aligned_cols=113  Identities=12%  Similarity=0.063  Sum_probs=78.2

Q ss_pred             EEecCCcEEE-----EeCCCCeEEEEEccCCcee-eEEEecCCCeEEEEECCCCCEEEEecCCCc-------------EE
Q psy11518         19 SVAATSKLAA-----SSGADETVVLYDMVKRKQS-GALMQHEGTITCLKFTPEGSHLISCSDDGS-------------IA   79 (139)
Q Consensus        19 ~~~~~~~~l~-----~~~~~~~v~i~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-------------i~   79 (139)
                      .+++||++|+     .|+.+..|++||+.+++.+ .... .......++|+|+++.|+.++.+..             |.
T Consensus       127 ~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~-~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~  205 (695)
T 2bkl_A          127 AVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVI-EGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIR  205 (695)
T ss_dssp             EECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCB-SCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEE
T ss_pred             EECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCccc-CcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEE
Confidence            4445999988     5556689999999998765 2111 1111267899999999998887665             99


Q ss_pred             EEEeCCceE--EEEEEeCCCCcceeEEEEccCCcEEEEEcCCC----eEEEEEcCCCce
Q psy11518         80 IFRVGSWQL--EKLFKKAHKGTAVNHISIHPSGKLALSVGKDK----TLRTWNLVKGRS  132 (139)
Q Consensus        80 ~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~  132 (139)
                      +|++.++..  ...+........+..+.|+|||++|+..+.++    .|.++|..+++.
T Consensus       206 ~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~  264 (695)
T 2bkl_A          206 YHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF  264 (695)
T ss_dssp             EEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC
T ss_pred             EEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce
Confidence            999987652  22332222222378899999999988877655    677777655543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.20  E-value=4.5e-09  Score=67.04  Aligned_cols=112  Identities=14%  Similarity=0.094  Sum_probs=88.8

Q ss_pred             ecCCcEEEEeCC-CCeEEEEEccCCceeeEEEe------cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         21 AATSKLAASSGA-DETVVLYDMVKRKQSGALMQ------HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        21 ~~~~~~l~~~~~-~~~v~i~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .++|+.+++.+. ++.+..+|. +++.+..+..      +......+++.++++++++...++.|..||.. ++.++.+.
T Consensus        85 ~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~  162 (276)
T 3no2_A           85 LPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVK  162 (276)
T ss_dssp             CTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEE
T ss_pred             CCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEE
Confidence            348999998876 788888885 6777766652      11234456788999999999999999999988 99999885


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ..  .. +.++...++++.++++..+++|..+|..+++.+..+.
T Consensus       163 ~~--~~-~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          163 LS--GT-PFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             CS--SC-CCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             CC--CC-ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            43  22 5677888999999999888899999999999987763

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.18  E-value=1.3e-09  Score=77.51  Aligned_cols=110  Identities=11%  Similarity=0.113  Sum_probs=78.2

Q ss_pred             EEecCCcEEEEeCCCC-----eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCc----------------
Q psy11518         19 SVAATSKLAASSGADE-----TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGS----------------   77 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~-----~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~----------------   77 (139)
                      .+++||++|+.+..++     .|++||+.+++.+.....+ ..+..++|+|+++.|+.++.++.                
T Consensus       131 ~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~  209 (710)
T 2xdw_A          131 AFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQK  209 (710)
T ss_dssp             EECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCE
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCE
Confidence            4455999888664332     8999999998876533222 23567899999999988877655                


Q ss_pred             EEEEEeCCceE--EEEEEeCCCCcceeEEEEccCCcEEEEEcC-----CCeEEEEEcCC
Q psy11518         78 IAIFRVGSWQL--EKLFKKAHKGTAVNHISIHPSGKLALSVGK-----DKTLRTWNLVK  129 (139)
Q Consensus        78 i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~  129 (139)
                      |.+|++.++..  ...+........+..+.|+|||++|+..+.     +..|.+||+.+
T Consensus       210 v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~  268 (710)
T 2xdw_A          210 LYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ  268 (710)
T ss_dssp             EEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred             EEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence            99999987652  222222222222678999999998887754     67899999976

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.16  E-value=3.1e-09  Score=69.14  Aligned_cols=101  Identities=13%  Similarity=0.212  Sum_probs=74.5

Q ss_pred             CCcEEEEeC---------CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC---C--cEEEEEeCCceE
Q psy11518         23 TSKLAASSG---------ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD---G--SIAIFRVGSWQL   88 (139)
Q Consensus        23 ~~~~l~~~~---------~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~--~i~~~d~~~~~~   88 (139)
                      +|+.++...         .++.|.+||+.+++... +    ..+..++|+|+|++++..+.+   +  .|.+||+.+++.
T Consensus        23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~   97 (347)
T 2gop_A           23 KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSS   97 (347)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEE
T ss_pred             CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCce
Confidence            777776542         25689999998876433 3    457889999999998876543   2  378888888776


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcC---------------------------CCeEEEEEcCCCce
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGK---------------------------DKTLRTWNLVKGRS  132 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------------------d~~i~i~d~~~~~~  132 (139)
                      .......   . +..++|+|+++.|+.++.                           ...|.+||+.+++.
T Consensus        98 ~~l~~~~---~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~  164 (347)
T 2gop_A           98 KKILEAK---N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV  164 (347)
T ss_dssp             EEEEEES---E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEE
T ss_pred             EEEEcCC---C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE
Confidence            6555222   2 788999999998887763                           25799999998876

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.14  E-value=1.8e-09  Score=75.97  Aligned_cols=110  Identities=14%  Similarity=0.151  Sum_probs=78.2

Q ss_pred             EEecCCcEEEEeCCC--------CeEEEEEcc-CC---ceeeEEEecCCCeEEEEECCCCCEEEEecCCC--cEEEEEeC
Q psy11518         19 SVAATSKLAASSGAD--------ETVVLYDMV-KR---KQSGALMQHEGTITCLKFTPEGSHLISCSDDG--SIAIFRVG   84 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~--------~~v~i~~~~-~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~   84 (139)
                      .+++||+.|+.++.+        ..|.+||+. ++   +.......+...+..+.|+|+|+++++++.++  .|..||..
T Consensus       194 ~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~  273 (662)
T 3azo_A          194 RLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPA  273 (662)
T ss_dssp             EECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTT
T ss_pred             eECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECC
Confidence            456699999877644        489999998 56   44444445577899999999999888888888  45556655


Q ss_pred             CceEEEEEEeCCCCcc--------eeEEEEccCCcEEEEEcCCCeEEEE--EcCCCc
Q psy11518         85 SWQLEKLFKKAHKGTA--------VNHISIHPSGKLALSVGKDKTLRTW--NLVKGR  131 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~d~~i~i~--d~~~~~  131 (139)
                      +++.....  .+....        +..++|+|+++++++++. +.+++|  |+.+++
T Consensus       274 ~~~~~~l~--~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          274 TGAATQLC--RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             TCCEEESS--CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred             CCceeecc--cccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence            66654433  122111        456889999999999998 998999  655554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.12  E-value=1.7e-08  Score=65.70  Aligned_cols=106  Identities=11%  Similarity=0.053  Sum_probs=80.9

Q ss_pred             CCcEEEEeC-CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC----------CcEEEEEeCCceEEEE
Q psy11518         23 TSKLAASSG-ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD----------GSIAIFRVGSWQLEKL   91 (139)
Q Consensus        23 ~~~~l~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------~~i~~~d~~~~~~~~~   91 (139)
                      ++.++++.. .++.|.++|+.+++.+..+... .....+.++|++++++++..+          +.|.++|..+++....
T Consensus       140 ~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~  218 (328)
T 3dsm_A          140 GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ  218 (328)
T ss_dssp             TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE
T ss_pred             CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEE
Confidence            444444443 4889999999999888777643 344788999999988777665          7899999999888777


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      +.... +..+..++++|+++.++++..  .|.+||+.+++.
T Consensus       219 ~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          219 FKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             EECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred             EecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence            64332 223789999999998888765  899999988765

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.12  E-value=1.1e-08  Score=67.83  Aligned_cols=111  Identities=11%  Similarity=-0.061  Sum_probs=84.9

Q ss_pred             cCCcEEEEeCC--CC---eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec----------CCCcEEEEEeCCc
Q psy11518         22 ATSKLAASSGA--DE---TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS----------DDGSIAIFRVGSW   86 (139)
Q Consensus        22 ~~~~~l~~~~~--~~---~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~   86 (139)
                      ++++.+++...  ..   .|.++|..+++.+.++.....+  .+.++|+++.++.+.          .++.|.+||..+.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            37777777664  22   8899999999988777654333  999999999988775          3677999999988


Q ss_pred             eEEEEEEeCCC-----CcceeEEEEccCCcEEEEEcC--CCeEEEEEcCCCceeEE
Q psy11518         87 QLEKLFKKAHK-----GTAVNHISIHPSGKLALSVGK--DKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        87 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~  135 (139)
                      +....+.....     +.....+.|+|||+++++++.  ++.|.++| .+++.+..
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~  162 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ  162 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE
Confidence            88777643310     112568999999999998874  57899999 99988766

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.10  E-value=3.8e-09  Score=71.18  Aligned_cols=114  Identities=11%  Similarity=0.001  Sum_probs=89.9

Q ss_pred             CCcEEEEeCCC-----CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec----------CCCcEEEEEeCCce
Q psy11518         23 TSKLAASSGAD-----ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS----------DDGSIAIFRVGSWQ   87 (139)
Q Consensus        23 ~~~~l~~~~~~-----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~   87 (139)
                      +++.+++....     +.|.++|..+.+.+.++..-..+  .+.++|++++++.+.          .++.|.++|..+++
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            66666655442     69999999999999988865555  899999999887765          46789999999999


Q ss_pred             EEEEEEeCCC-----CcceeEEEEccCCcEEEEEcC--CCeEEEEEcCCCceeEEEec
Q psy11518         88 LEKLFKKAHK-----GTAVNHISIHPSGKLALSVGK--DKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        88 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ....+.....     +.....+.++|||++++++..  ++.|.++|+.+++.+..+.+
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            8888754311     122567899999999998864  68899999999998877654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.10  E-value=2.2e-08  Score=65.23  Aligned_cols=118  Identities=7%  Similarity=0.019  Sum_probs=85.6

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCC
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH   96 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~   96 (139)
                      ..+.+ ++.++++...++.|.++|..+++.+.++.. ......++++++++.+++...++.|.+||..+++....+....
T Consensus        47 ~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~  125 (328)
T 3dsm_A           47 QSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPD  125 (328)
T ss_dssp             EEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTT
T ss_pred             eEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCC
Confidence            34444 555666666789999999999999888853 4567899998888555555478999999999998887774433


Q ss_pred             CC---cceeEEEEccCCcEEEEEc-CCCeEEEEEcCCCceeEEEe
Q psy11518         97 KG---TAVNHISIHPSGKLALSVG-KDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        97 ~~---~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ..   ..+..+++ .+++.+++.. .++.|.++|+++++.+..+.
T Consensus       126 ~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~  169 (328)
T 3dsm_A          126 MDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELT  169 (328)
T ss_dssp             CCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEE
Confidence            10   02566777 4555555544 48899999999998877654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.09  E-value=1e-08  Score=67.60  Aligned_cols=112  Identities=4%  Similarity=-0.035  Sum_probs=82.5

Q ss_pred             EEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEE--ECCCCCEEEEe----------------------c
Q psy11518         18 RSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK--FTPEGSHLISC----------------------S   73 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~   73 (139)
                      ..++++++.|+.+..++.|.+||+.+++.......+...+....  ++|+++.++..                      .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (388)
T 3pe7_A           86 GFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK  165 (388)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred             eEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence            35677999999999899999999999987766665555444343  48999988742                      2


Q ss_pred             CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEcc-CCcEEEEEcCC------CeEEEEEcCCCce
Q psy11518         74 DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSVGKD------KTLRTWNLVKGRS  132 (139)
Q Consensus        74 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------~~i~i~d~~~~~~  132 (139)
                      .+..|.+||+.+++......  +... +..++|+| +++.|+....+      ..|.++|+..++.
T Consensus       166 ~~~~l~~~d~~~g~~~~l~~--~~~~-~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~  228 (388)
T 3pe7_A          166 PCCRLMRVDLKTGESTVILQ--ENQW-LGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM  228 (388)
T ss_dssp             CCEEEEEEETTTCCEEEEEE--ESSC-EEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred             CcceEEEEECCCCceEEeec--CCcc-ccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence            34679999999887665552  2223 78999999 99988776643      3788888866543

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.08  E-value=6.3e-09  Score=69.32  Aligned_cols=97  Identities=11%  Similarity=0.080  Sum_probs=74.5

Q ss_pred             cceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE--E
Q psy11518         12 SHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL--E   89 (139)
Q Consensus        12 ~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~   89 (139)
                      .+...+.++.+....+++++.||.|.+||+.++....    +...|+|++|+|+|  ++.|..||.+++|+....+.  .
T Consensus       124 ~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k  197 (388)
T 1xip_A          124 SFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQ  197 (388)
T ss_dssp             ECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEE
T ss_pred             eeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCcccccc
Confidence            3445567777744458888999999999998776543    34589999999999  67889999999999988775  4


Q ss_pred             EEEEe--------CCCCcceeEEEEccCCcEEEE
Q psy11518         90 KLFKK--------AHKGTAVNHISIHPSGKLALS  115 (139)
Q Consensus        90 ~~~~~--------~~~~~~v~~~~~~~~~~~l~~  115 (139)
                      ..+..        .+. ..|.+++|.+++.++++
T Consensus       198 ~~I~~Pp~~~~~~~~~-~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          198 FEFSLPSELEELPVEE-YSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEECCCHHHHTSCTTT-SEEEEEEESSSSEEEEE
T ss_pred             ceecCCcccccccCCC-eeEEEEEEecCCeEEEE
Confidence            44421        133 44999999999998876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.08  E-value=4.7e-09  Score=69.31  Aligned_cols=89  Identities=9%  Similarity=0.197  Sum_probs=70.9

Q ss_pred             EEEecCCcEEEEeCC-----------CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         18 RSVAATSKLAASSGA-----------DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~-----------~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ..+.++++.++++..           +..|.+||+.+++.+.++..+.  +..++|+|++++|++++. +.|.+||..++
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC
Confidence            355667777666532           3589999999999999998876  799999999999998887 99999999999


Q ss_pred             --eEEEEEEeCCCCcceeEEEEccCCc
Q psy11518         87 --QLEKLFKKAHKGTAVNHISIHPSGK  111 (139)
Q Consensus        87 --~~~~~~~~~~~~~~v~~~~~~~~~~  111 (139)
                        +.+..+ .. .+.....++++|+|.
T Consensus       336 ~l~~~~~i-~~-~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EPKLLRTI-EG-AAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEEE-TT-SCSSEEEEEECCCSC
T ss_pred             cceeeEEe-cc-CCCCcEEEEecCCCC
Confidence              877775 22 233378899999985

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.07  E-value=1.1e-08  Score=66.49  Aligned_cols=95  Identities=16%  Similarity=0.172  Sum_probs=67.5

Q ss_pred             EEEecCCcEEEEeCCC-----CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC-----------------
Q psy11518         18 RSVAATSKLAASSGAD-----ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD-----------------   75 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~-----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----------------   75 (139)
                      ..++++|+.|+..+.+     ..|.+|++.+++.......+ . +..+.|+|+++.|+.++.+                 
T Consensus        64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC-
T ss_pred             eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceee
Confidence            3555689988876643     24778888877655544433 3 8999999999988876532                 


Q ss_pred             ----------CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC
Q psy11518         76 ----------GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD  119 (139)
Q Consensus        76 ----------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  119 (139)
                                ..|.+||+.+++....+..  .  .+..++|+|+| +++++..+
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~--~~~~~~~spdg-~~~~~~~~  190 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK--P--RFSSGIWHRDK-IVVNVPHR  190 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEE--E--TTCEEEEETTE-EEEEEECC
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecC--C--CcccccCCCCe-EEEEEecc
Confidence                      4688999988877444423  2  37889999999 77777543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.05  E-value=6.6e-09  Score=65.36  Aligned_cols=113  Identities=6%  Similarity=0.041  Sum_probs=82.9

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCC
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG   98 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~   98 (139)
                      ++.++++++++...++.|.+|+............+...+..+++++++..+++...++.|..||........ ....+..
T Consensus       156 ~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~  234 (270)
T 1rwi_B          156 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLN  234 (270)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCCCSCS
T ss_pred             EEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-eccCCCC
Confidence            334478877777778899999987665433322333567899999999888888788899999987654332 2122222


Q ss_pred             cceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         99 TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                       .+.+++++++|+++++...++.|+++++...+..
T Consensus       235 -~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~~  268 (270)
T 1rwi_B          235 -TPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHHH  268 (270)
T ss_dssp             -CEEEEEECTTCCEEEEEGGGTEEEEECCCGGGSC
T ss_pred             -CceeEEECCCCCEEEEECCCCEEEEEcCCCcccc
Confidence             3889999999998888889999999999876543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.03  E-value=5.5e-08  Score=62.13  Aligned_cols=97  Identities=11%  Similarity=0.043  Sum_probs=73.7

Q ss_pred             EEEecCCc-EEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeC-
Q psy11518         18 RSVAATSK-LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA-   95 (139)
Q Consensus        18 ~~~~~~~~-~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-   95 (139)
                      ..+.++++ +++++..++.|..|+..++  ...+..+...+.+++++|+++++++...++.|.+||..+++........ 
T Consensus        33 ~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~  110 (296)
T 3e5z_A           33 PVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFE  110 (296)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEET
T ss_pred             CeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC
Confidence            34445777 7888888999999999877  5666667778899999999998888877889999999777765443211 


Q ss_pred             -CCCcceeEEEEccCCcEEEEE
Q psy11518         96 -HKGTAVNHISIHPSGKLALSV  116 (139)
Q Consensus        96 -~~~~~v~~~~~~~~~~~l~~~  116 (139)
                       .....+..++++|+|+++++.
T Consensus       111 ~~~~~~~~~i~~d~~G~l~vtd  132 (296)
T 3e5z_A          111 GKKLNSPNDVCLAPDGSLWFSD  132 (296)
T ss_dssp             TEECCCCCCEEECTTSCEEEEE
T ss_pred             CCCCCCCCCEEECCCCCEEEEC
Confidence             111226789999999988873

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.03  E-value=3.5e-09  Score=68.65  Aligned_cols=112  Identities=14%  Similarity=0.122  Sum_probs=84.0

Q ss_pred             EEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe
Q psy11518         17 VRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        17 v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      +.++.+  ++..++....++.++.|   .++....+..+...+.+++|+|++++++++..++.|.+||..+++..... .
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-~   83 (333)
T 2dg1_A            8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF-V   83 (333)
T ss_dssp             CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE-E
T ss_pred             cceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe-e
Confidence            344555  45556666777888888   44556666667777899999999998888888999999999887765544 2


Q ss_pred             CCCCcceeEEEEccCCcEEEEEcCC----CeEEEEEcCCCcee
Q psy11518         95 AHKGTAVNHISIHPSGKLALSVGKD----KTLRTWNLVKGRSA  133 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~  133 (139)
                      .... .+.+++++|+++++++...+    +.|.+||..+++..
T Consensus        84 ~~~~-~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~  125 (333)
T 2dg1_A           84 SHKA-NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  125 (333)
T ss_dssp             CSSS-SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             CCCC-CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence            2333 38999999999988877766    68999999877654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.98  E-value=1.1e-08  Score=73.31  Aligned_cols=110  Identities=15%  Similarity=0.177  Sum_probs=74.8

Q ss_pred             EEecCCcEEEEeCCC-----CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCc--------------EE
Q psy11518         19 SVAATSKLAASSGAD-----ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGS--------------IA   79 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~-----~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--------------i~   79 (139)
                      .+++||++|+.+..+     ..|++||+.+++.+.. ..+...+..++|+|+ +.|+.+..++.              |.
T Consensus       169 ~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~  246 (741)
T 1yr2_A          169 AASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVW  246 (741)
T ss_dssp             EECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEE
T ss_pred             EECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEE
Confidence            445599988876533     4699999999887543 112222357899999 98887766543              88


Q ss_pred             EEEeCCceE--EEEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCC
Q psy11518         80 IFRVGSWQL--EKLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKG  130 (139)
Q Consensus        80 ~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~  130 (139)
                      +|++.++..  ...+........+..+.|+|||++|+..+.+     ..|.+||+.++
T Consensus       247 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          247 LHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             EEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            899876542  2223222221127889999999988877654     38999999876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=98.97  E-value=1.5e-07  Score=60.18  Aligned_cols=112  Identities=15%  Similarity=0.113  Sum_probs=76.4

Q ss_pred             EEecCCcEEEEe----C-------------CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEE
Q psy11518         19 SVAATSKLAASS----G-------------ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIF   81 (139)
Q Consensus        19 ~~~~~~~~l~~~----~-------------~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~   81 (139)
                      .+.++|+++++.    +             ..+.|..++.. ++ ...+..+......++|+|+++.+++...++.|.+|
T Consensus       121 ~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~  198 (296)
T 3e5z_A          121 CLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRY  198 (296)
T ss_dssp             EECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEE
Confidence            344588888863    2             13456555554 33 44445566677899999999988777888999999


Q ss_pred             EeC-CceE---EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         82 RVG-SWQL---EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        82 d~~-~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++. ++..   ...+ ..... .+.+++++++|++.++.  ++.|.+||.. ++.+..+.
T Consensus       199 ~~~~~g~~~~~~~~~-~~~~~-~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~  253 (296)
T 3e5z_A          199 CLNARGETEYQGVHF-TVEPG-KTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL  253 (296)
T ss_dssp             EECSSSCEEEEEEEE-CCSSS-CCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE
T ss_pred             EECCCCcCcCCCeEe-eCCCC-CCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE
Confidence            996 4544   2333 22233 36789999999876666  7889999986 66655543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.92  E-value=6.5e-07  Score=56.80  Aligned_cols=122  Identities=11%  Similarity=0.154  Sum_probs=85.9

Q ss_pred             EEEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE--ecCCCeEEEEECCCCCEEEEecCCCcEEEE
Q psy11518          6 QTFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM--QHEGTITCLKFTPEGSHLISCSDDGSIAIF   81 (139)
Q Consensus         6 ~~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~   81 (139)
                      ..+........+.++..  ++.++++...++.|..||.. ++. ..+.  .....+..+++++++..+++...++.|..|
T Consensus         6 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~   83 (299)
T 2z2n_A            6 QELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRI   83 (299)
T ss_dssp             EEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred             EEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEE
Confidence            33444444455666665  78887777778899999987 543 2322  244678999999999988888778889999


Q ss_pred             EeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         82 RVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      |.. +.. ..+........+..+++++++.++++...++.|..||. +++.
T Consensus        84 ~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  131 (299)
T 2z2n_A           84 TKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI  131 (299)
T ss_dssp             CTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             CCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence            976 333 22322222334889999999998888878889999998 5543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.92  E-value=2.2e-09  Score=70.81  Aligned_cols=115  Identities=6%  Similarity=0.017  Sum_probs=76.2

Q ss_pred             EEecCCcEEEEeCC---CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeC
Q psy11518         19 SVAATSKLAASSGA---DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA   95 (139)
Q Consensus        19 ~~~~~~~~l~~~~~---~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~   95 (139)
                      .++++|+.|+....   +..|.+||+.+++.......+......+.|+|+++.|+..+.++.|.+||+.+++........
T Consensus        42 ~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~  121 (396)
T 3c5m_A           42 CFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD  121 (396)
T ss_dssp             CBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred             cCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc
Confidence            34568988776543   347888898887654333322222233789999999998888889999999888766555222


Q ss_pred             CCCcceeE-------------------EEEccCCcEEEEE-----cCCCeEEEEEcCCCceeEE
Q psy11518         96 HKGTAVNH-------------------ISIHPSGKLALSV-----GKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        96 ~~~~~v~~-------------------~~~~~~~~~l~~~-----~~d~~i~i~d~~~~~~~~~  135 (139)
                       ... ...                   ..|+|+++.++..     ..+..|.+||+.+++....
T Consensus       122 -~~~-~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~  183 (396)
T 3c5m_A          122 -EEW-KGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI  183 (396)
T ss_dssp             -TTE-EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE
T ss_pred             -ccc-CCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee
Confidence             211 111                   3567777766554     3567899999998876543

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.91  E-value=5.5e-08  Score=64.11  Aligned_cols=110  Identities=13%  Similarity=0.027  Sum_probs=71.4

Q ss_pred             EEec-CCcEEEEeCCC------CeEEEEEccCCceeeEEEec-CCCeEEEEECCCCCEEEEecCC-----CcEEEEEeCC
Q psy11518         19 SVAA-TSKLAASSGAD------ETVVLYDMVKRKQSGALMQH-EGTITCLKFTPEGSHLISCSDD-----GSIAIFRVGS   85 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~------~~v~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~   85 (139)
                      .+++ ++..++..+.+      ..|.+|++..++........ ...+..+.|+|++++++..+.+     +.|.+||+.+
T Consensus       194 ~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~  273 (396)
T 3c5m_A          194 IYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPET  273 (396)
T ss_dssp             EEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTT
T ss_pred             eECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCC
Confidence            4455 57666554432      46888888665432222211 2347788999999987765433     3499999988


Q ss_pred             ceEEEEEEeCCCCcceeEEEEcc-CCcEEEEEc----------------CCCeEEEEEcCCCcee
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHP-SGKLALSVG----------------KDKTLRTWNLVKGRSA  133 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~d~~i~i~d~~~~~~~  133 (139)
                      ++.......  ..  .. +.|+| ++++++.++                .+..|.+||+.+++..
T Consensus       274 g~~~~l~~~--~~--~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~  333 (396)
T 3c5m_A          274 LENEEVMVM--PP--CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ  333 (396)
T ss_dssp             CCEEEEEEC--CS--EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC
T ss_pred             CCeEEeeeC--CC--CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE
Confidence            776544321  12  33 88999 999888754                3478999999887643

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.89  E-value=1.8e-10  Score=76.28  Aligned_cols=110  Identities=12%  Similarity=0.016  Sum_probs=60.6

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      ++..+++++.|+.|..||..+++.+..+..  ..+.+..+.+++..+++++.|+.|..||..+++.+..+.... ...+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~-~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI-PELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH-HHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC-ccccc
Confidence            688999999999999999999999988876  444555555677788888899999999998887665542111 00010


Q ss_pred             -EEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518        103 -HISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       103 -~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                       ...+. .+..+++++.|+.++.||.++|+.+..+
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~  118 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL  118 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC--------
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe
Confidence             00111 2334555666677777777777665443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=98.88  E-value=1e-06  Score=55.84  Aligned_cols=114  Identities=10%  Similarity=0.084  Sum_probs=81.4

Q ss_pred             eeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE--ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         15 ASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM--QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      ..+..+.+  ++.++++...++.|..|+.. ++ ...+.  .....+..+.++++++++++...++.|..||. ++....
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~  133 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE  133 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE
Confidence            34455554  77888887778899999976 33 22232  23456889999999998888877888999998 555443


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      .. .......+..+++++++.++++...++.|..||. +++..
T Consensus       134 ~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~  174 (299)
T 2z2n_A          134 YE-LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDIT  174 (299)
T ss_dssp             EE-CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred             ec-CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEE
Confidence            32 2222334889999999988888777889999998 66544

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.88  E-value=1.7e-07  Score=66.78  Aligned_cols=113  Identities=12%  Similarity=0.090  Sum_probs=85.5

Q ss_pred             CC---cEEEEeCCCCeEEEEEccCCceeeEEEecCC----------C-e------------------------EEEEECC
Q psy11518         23 TS---KLAASSGADETVVLYDMVKRKQSGALMQHEG----------T-I------------------------TCLKFTP   64 (139)
Q Consensus        23 ~~---~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~----------~-v------------------------~~~~~~~   64 (139)
                      +|   ..++.++.+|.+.++|..+++.+..+.....          . +                        ..++++|
T Consensus       323 dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp  402 (677)
T 1kb0_A          323 AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNP  402 (677)
T ss_dssp             TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEET
T ss_pred             CCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcC
Confidence            66   6789999999999999999998876652210          0 0                        1467888


Q ss_pred             CCCEEEEecC-------------------------------------------CCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         65 EGSHLISCSD-------------------------------------------DGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        65 ~~~~l~~~~~-------------------------------------------d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                      ++.++++...                                           .+.|..||+.+++..+.+.....   +
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~---~  479 (677)
T 1kb0_A          403 QTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP---W  479 (677)
T ss_dssp             TTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSS---C
T ss_pred             CCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCC---C
Confidence            8777765432                                           26799999999999988854322   3


Q ss_pred             eEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        102 NHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ....+...+..++.++.|+.+++||+++++.+..+.+
T Consensus       480 ~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~  516 (677)
T 1kb0_A          480 NGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (677)
T ss_dssp             CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence            4445566788888899999999999999999988764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=98.87  E-value=8.7e-08  Score=60.20  Aligned_cols=113  Identities=11%  Similarity=0.048  Sum_probs=79.6

Q ss_pred             EEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe
Q psy11518         17 VRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        17 v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      ...+.+  ++.++++...++.|.+|+..+.............+..++++++++++++...++.|..||.......... .
T Consensus       110 p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~  188 (270)
T 1rwi_B          110 PEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP-F  188 (270)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC-C
T ss_pred             CcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec-c
Confidence            344444  7777777777889999976554333222222335678999999998888777889999998776544322 2


Q ss_pred             CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         95 AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ... ..+.+++++++|.++++...++.|.+||.....
T Consensus       189 ~~~-~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          189 TDI-TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             SSC-CSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred             cCC-CCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence            222 338899999999888887788899999987644

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.86  E-value=9e-07  Score=55.92  Aligned_cols=127  Identities=7%  Similarity=-0.075  Sum_probs=87.2

Q ss_pred             eEEEEEeecceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCC-eEEEEECCCCCEEEEecCCCcEEEE
Q psy11518          4 LTQTFVTHSHTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGT-ITCLKFTPEGSHLISCSDDGSIAIF   81 (139)
Q Consensus         4 ~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~d~~i~~~   81 (139)
                      .++++.. ........+.+ ++.+..+.+.++.|+++|+++++.+..+ -.... -..+++.. .+.....-.++.+.++
T Consensus        45 Vv~~~ph-d~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~  121 (268)
T 3nok_A           45 IIREYPH-ATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDG-ERLYQLTWTEGLLFTW  121 (268)
T ss_dssp             EEEEEEC-CTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECS-SCEEEEESSSCEEEEE
T ss_pred             EEEEEcC-CCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeC-CEEEEEEccCCEEEEE
Confidence            4444432 22233345566 5666677788889999999999888776 32221 13355543 3444555678899999


Q ss_pred             EeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         82 RVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      |..+.+.+..+.....   -..++  ++++.|+.+..++.|.++|..+.+.+..+.+
T Consensus       122 D~~Tl~~~~ti~~~~e---GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          122 SGMPPQRERTTRYSGE---GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             ETTTTEEEEEEECSSC---CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ECCcCcEEEEEeCCCc---eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            9999999999865433   24445  4677777777799999999999998887764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.86  E-value=6.5e-07  Score=57.34  Aligned_cols=107  Identities=11%  Similarity=0.170  Sum_probs=75.2

Q ss_pred             cCCcEE-EEeCCCCeEEEEEcc-CCce-----eeEEEecC-CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         22 ATSKLA-ASSGADETVVLYDMV-KRKQ-----SGALMQHE-GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        22 ~~~~~l-~~~~~~~~v~i~~~~-~~~~-----~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      ++++.+ ++...++.|.+|++. +++.     ...+..+. ..+..++++++++++++...++.|..||..+++....+.
T Consensus       185 ~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~  264 (314)
T 1pjx_A          185 GRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR  264 (314)
T ss_dssp             SCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE
T ss_pred             CCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe
Confidence            666554 455678899999986 4432     12222232 457889999999988887778899999988666555553


Q ss_pred             eCCCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcCCC
Q psy11518         94 KAHKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~  130 (139)
                      .. .. .+.+++++|+++.| ++...++.|..|++...
T Consensus       265 ~~-~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          265 CP-FE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             CS-SS-CEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CC-CC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            22 23 38999999999944 55556789999998753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.84  E-value=2.2e-06  Score=54.40  Aligned_cols=132  Identities=11%  Similarity=-0.027  Sum_probs=85.7

Q ss_pred             eeeEEEEEeecce-eeEEEEecCCcEEEEeCC--CCeEEEEEccCCceeeEEEecC-CCeEEEEECCCCCEEEEecCCCc
Q psy11518          2 YTLTQTFVTHSHT-ASVRSVAATSKLAASSGA--DETVVLYDMVKRKQSGALMQHE-GTITCLKFTPEGSHLISCSDDGS   77 (139)
Q Consensus         2 ~~~~~~~~~~~~~-~~v~~~~~~~~~l~~~~~--~~~v~i~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~   77 (139)
                      ++.+.++...+.. ..=..+.+++.+.++.+.  ++.|+++|+.+++.+..+.-.. .....+++. .++..++.-.++.
T Consensus         9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~   87 (266)
T 2iwa_A            9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNI   87 (266)
T ss_dssp             EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCE
Confidence            4556666543321 122333445555554443  6899999999999888765322 122345554 2344455566889


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +.++|..+.+.+..+... ... -..  +++|++.++++..++.|.++|..+.+.+..+.+
T Consensus        88 v~viD~~t~~v~~~i~~g-~~~-g~g--lt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V  144 (266)
T 2iwa_A           88 GFIYDRRTLSNIKNFTHQ-MKD-GWG--LATDGKILYGSDGTSILYEIDPHTFKLIKKHNV  144 (266)
T ss_dssp             EEEEETTTTEEEEEEECC-SSS-CCE--EEECSSSEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EEEEECCCCcEEEEEECC-CCC-eEE--EEECCCEEEEECCCCeEEEEECCCCcEEEEEEE
Confidence            999999999998888544 111 233  455788777777889999999999988877653

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.83  E-value=1.3e-06  Score=55.39  Aligned_cols=112  Identities=12%  Similarity=0.104  Sum_probs=83.3

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEec-CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcc-
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQH-EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA-  100 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-  100 (139)
                      .+.+.++.-.++.+.++|..+.+.+.++..- ..   .+.++++++.++.+..++.|.++|..+.+....+.....+.+ 
T Consensus        75 g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~  151 (266)
T 2iwa_A           75 NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV  151 (266)
T ss_dssp             TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc
Confidence            3445556667899999999999998888643 22   233555777777777788999999999888887754433222 


Q ss_pred             --eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        101 --VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       101 --v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                        +..+.|. +++.++....++.|.+.|..+++.+..+.+
T Consensus       152 ~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~  190 (266)
T 2iwa_A          152 IRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILL  190 (266)
T ss_dssp             CCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEEC
T ss_pred             ccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEEC
Confidence              5678888 776666666788999999999999888765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.82  E-value=2.9e-07  Score=61.34  Aligned_cols=121  Identities=10%  Similarity=0.065  Sum_probs=82.6

Q ss_pred             eeeEEEEEeecceeeEEEEecCCcEEEEeC----------CCCeEEEEEccCCceeeEEEecC-------CCeEEEEECC
Q psy11518          2 YTLTQTFVTHSHTASVRSVAATSKLAASSG----------ADETVVLYDMVKRKQSGALMQHE-------GTITCLKFTP   64 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~----------~~~~v~i~~~~~~~~~~~~~~~~-------~~v~~~~~~~   64 (139)
                      ++.+.++...... . ..++++++.++++.          .++.|.+||..+.+.+.++.-..       .....+.++|
T Consensus        69 ~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp  146 (386)
T 3sjl_D           69 GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP  146 (386)
T ss_dssp             TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT
T ss_pred             CeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC
Confidence            3455666653333 3 77888999887775          36789999999999888775321       1345789999


Q ss_pred             CCCEEEEecC--CCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         65 EGSHLISCSD--DGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        65 ~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      +|+++..+..  ++.|.++|+.+++....+.....     ...+....+.+++.+.||.+.+.++.+
T Consensus       147 DGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~~~~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          147 DGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDTFFMHCRDGSLAKVAFGT  208 (386)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred             CCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCceeEEECCCCCEEEEECCC
Confidence            9999887763  68899999999999888844321     112222334455556666766666655

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.82  E-value=3.3e-06  Score=52.78  Aligned_cols=130  Identities=8%  Similarity=0.012  Sum_probs=87.5

Q ss_pred             eeeEEEEEeecceeeEEEEec-CCcEEEEeCCC--CeEEEEEccCCceeeEEEecCCCe-EEEEECCCCCEEEEecCCCc
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA-TSKLAASSGAD--ETVVLYDMVKRKQSGALMQHEGTI-TCLKFTPEGSHLISCSDDGS   77 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~~--~~v~i~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~   77 (139)
                      ++.++++.. ......-.+.+ ++.+..+.+..  ..|+.+|+++++.+....-..... ..++.. +++.....-.++.
T Consensus         9 ~~v~~~~ph-d~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~   86 (243)
T 3mbr_X            9 YRVVKRYPH-DTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE   86 (243)
T ss_dssp             EEEEEEEEC-CTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred             eEEEEEcCC-CCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence            566777743 23344456666 44444555554  499999999999888776432221 233433 2344455567889


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +.++|..+.+.+..+.....   -..++  +++..|+.+..++.|.++|..+.+.+..+.+
T Consensus        87 v~v~D~~tl~~~~ti~~~~~---Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           87 GFVYDLATLTPRARFRYPGE---GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             EEEEETTTTEEEEEEECSSC---CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             EEEEECCcCcEEEEEeCCCC---ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            99999999999999865433   24555  4567666666789999999999998887764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.82  E-value=7.6e-08  Score=63.80  Aligned_cols=102  Identities=11%  Similarity=-0.116  Sum_probs=79.0

Q ss_pred             EEEEeCCCC----eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec----------CCCcEEEEEeCCceEEEE
Q psy11518         26 LAASSGADE----TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS----------DDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        26 ~l~~~~~~~----~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~   91 (139)
                      .+++...++    .|.++|..+++.+.++..-..+  .+.++|+++.+..+.          .++.|.+||..+++....
T Consensus        34 ~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~  111 (368)
T 1mda_H           34 SHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD  111 (368)
T ss_dssp             EEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE
T ss_pred             EEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEE
Confidence            344444444    8889999999999998865555  799999999888775          367899999999999988


Q ss_pred             EEeCCC-----CcceeEEEEccCCcEEEEEcC--CCeEEE--EEcCC
Q psy11518         92 FKKAHK-----GTAVNHISIHPSGKLALSVGK--DKTLRT--WNLVK  129 (139)
Q Consensus        92 ~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--d~~i~i--~d~~~  129 (139)
                      +..+..     +.....++++|||++++++..  +..+.+  +|+.+
T Consensus       112 I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t  158 (368)
T 1mda_H          112 IELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD  158 (368)
T ss_dssp             EEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred             EECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence            854411     122567999999999988864  467888  88866

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.80  E-value=3.1e-06  Score=53.66  Aligned_cols=123  Identities=8%  Similarity=0.079  Sum_probs=85.4

Q ss_pred             EEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceee-EEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518          7 TFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSG-ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      .+..........++..  ++.++++...++.|..||.. ++... .+......+..++++++++.+++...++.|..+|.
T Consensus        12 ~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~   90 (300)
T 2qc5_A           12 EFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK   90 (300)
T ss_dssp             EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             EEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence            3443333344555554  78888887788999999987 54332 12223356889999999998888777888999998


Q ss_pred             CCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      . ++.. .+........+.++++.++++++++...++.|..||.. ++..
T Consensus        91 ~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~  137 (300)
T 2qc5_A           91 K-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY  137 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred             C-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence            7 5543 33233223348899999999988887778899999987 5443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.80  E-value=2.4e-06  Score=53.95  Aligned_cols=130  Identities=8%  Similarity=0.061  Sum_probs=86.2

Q ss_pred             eeeEEEEEeecceeeEEEEec-CCcEEEEeCCCC--eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEE-EEecCCCc
Q psy11518          2 YTLTQTFVTHSHTASVRSVAA-TSKLAASSGADE--TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL-ISCSDDGS   77 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~~~--~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~   77 (139)
                      ++.++++... .....-.+.+ ++.++.+.+.+|  .|+.+|+++++.+....... ........+.+..+ ...-.++.
T Consensus        31 ~~vv~~~phd-~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~  108 (262)
T 3nol_A           31 YQIVHSYPHD-TKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGL  108 (262)
T ss_dssp             EEEEEEEECC-TTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSE
T ss_pred             eEEEEEecCC-CCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCE
Confidence            4556666432 2233344555 565556666554  89999999999888876433 22232222334444 44556889


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +.++|..+.+.+..+.....+   ..++  ++++.|+.+..++.|.++|..+.+.+..+.+
T Consensus       109 v~v~D~~t~~~~~ti~~~~eG---~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          109 GFVWNIRNLRQVRSFNYDGEG---WGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             EEEEETTTCCEEEEEECSSCC---CCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             EEEEECccCcEEEEEECCCCc---eEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence            999999999999998654332   3344  5677777776788999999999988877654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.80  E-value=5.8e-07  Score=64.15  Aligned_cols=115  Identities=10%  Similarity=0.046  Sum_probs=83.3

Q ss_pred             ecCCc---EEEEeCCCCeEEEEEccCCceeeEEEecCC-C--------------------------------------eE
Q psy11518         21 AATSK---LAASSGADETVVLYDMVKRKQSGALMQHEG-T--------------------------------------IT   58 (139)
Q Consensus        21 ~~~~~---~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~-~--------------------------------------v~   58 (139)
                      ..+|+   .++.++.+|.+.++|..+++.+........ .                                      -.
T Consensus       313 ~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~  392 (689)
T 1yiq_A          313 PIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQ  392 (689)
T ss_dssp             EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSS
T ss_pred             ccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCC
Confidence            34555   788999999999999999988744321110 0                                      01


Q ss_pred             EEEECCCCCEEEEecC---------------------------------------------CCcEEEEEeCCceEEEEEE
Q psy11518         59 CLKFTPEGSHLISCSD---------------------------------------------DGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        59 ~~~~~~~~~~l~~~~~---------------------------------------------d~~i~~~d~~~~~~~~~~~   93 (139)
                      .++++|+..++++...                                             +|.|..||+.+++..+.+.
T Consensus       393 ~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~  472 (689)
T 1yiq_A          393 PMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP  472 (689)
T ss_dssp             CCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE
T ss_pred             cceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc
Confidence            2678887776665421                                             3779999999999998885


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ....   .....+...+.+++.++.|+.++.||.++|+.+..+.+
T Consensus       473 ~~~~---~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          473 YVTI---FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             ESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCCC---ccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence            4322   23334556788899999999999999999999988764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.80  E-value=2.4e-06  Score=54.78  Aligned_cols=123  Identities=14%  Similarity=0.135  Sum_probs=77.5

Q ss_pred             eEEEEec--CCcEEEEeCC---------CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEE-EEecCCCcEEEEEe
Q psy11518         16 SVRSVAA--TSKLAASSGA---------DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL-ISCSDDGSIAIFRV   83 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~---------~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~   83 (139)
                      .+.++.+  +|+++++...         ...-.+|.+........+.........++|+|+++.+ ++.+.++.|..||+
T Consensus        99 ~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~  178 (297)
T 3g4e_A           99 RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDY  178 (297)
T ss_dssp             EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred             CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEec
Confidence            3445544  7876665422         1223455444322233333334456899999999866 45566788999997


Q ss_pred             --CCceEE--EEEEe-CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         84 --GSWQLE--KLFKK-AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        84 --~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                        .++...  ..+.. ......+..++++++|++.++....+.|..||..+++.+..+.+
T Consensus       179 d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          179 DLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL  238 (297)
T ss_dssp             CTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC
T ss_pred             cCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC
Confidence              445432  22211 11122378899999998888777788999999998988776653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.77  E-value=1.2e-06  Score=55.21  Aligned_cols=115  Identities=11%  Similarity=0.147  Sum_probs=83.9

Q ss_pred             Eec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCC
Q psy11518         20 VAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG   98 (139)
Q Consensus        20 ~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~   98 (139)
                      +.+ .+.+.+....++.+.+||.++.+.+.++......   ..+++++..|+.+..++.|.++|..+.+....+.....+
T Consensus        92 it~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG---~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g  168 (262)
T 3nol_A           92 ISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEG---WGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHG  168 (262)
T ss_dssp             EEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCC---CCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETT
T ss_pred             EEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCc---eEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCC
Confidence            344 3444455557899999999999999988753322   233456777777777888999999998888877553332


Q ss_pred             cc---eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         99 TA---VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        99 ~~---v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .+   ++.+.|. +|+..+..-.++.|.+.|.++++.+..+.+
T Consensus       169 ~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          169 EELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             EECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred             ccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEEC
Confidence            22   4557776 777666666788999999999999988875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.76  E-value=2.4e-06  Score=56.75  Aligned_cols=102  Identities=10%  Similarity=0.086  Sum_probs=72.7

Q ss_pred             CCCCeEEEEEccCCc--eeeEEEe----------cCCCeEEEEECCCCCEEEEecC----------CCcEEEEEeCCceE
Q psy11518         31 GADETVVLYDMVKRK--QSGALMQ----------HEGTITCLKFTPEGSHLISCSD----------DGSIAIFRVGSWQL   88 (139)
Q Consensus        31 ~~~~~v~i~~~~~~~--~~~~~~~----------~~~~v~~~~~~~~~~~l~~~~~----------d~~i~~~d~~~~~~   88 (139)
                      +..+.+.+.|+.+..  .+..+.-          .......+.++|+++.+.....          ++.|.++|..+++.
T Consensus       231 ~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v  310 (373)
T 2mad_H          231 VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT  310 (373)
T ss_pred             cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence            356778888876542  1222211          0122344788998887766532          35799999999999


Q ss_pred             EEEEEeCCCCcceeEEEEccCCc-EEEEEc-CCCeEEEEEcCCCceeEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGK-LALSVG-KDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~i~i~d~~~~~~~~~  135 (139)
                      +..+....   ...+++|+|||+ .++++. .++.|.++|+.+++.+..
T Consensus       311 v~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          311 SSQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            88884433   278999999999 777777 589999999999998876

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.75  E-value=2.4e-09  Score=70.93  Aligned_cols=107  Identities=11%  Similarity=0.056  Sum_probs=62.3

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      .+..+++++.++.+..||..+++.+..+..+.    ...++|++..+++++.++.|..||.++++.++.+....    ..
T Consensus        91 ~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~----~~  162 (369)
T 2hz6_A           91 SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD----YA  162 (369)
T ss_dssp             ----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE----EC
T ss_pred             cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc----cc
Confidence            45567788889999999999999888776543    23456678888899999999999999988766653221    12


Q ss_pred             EEEEccCC---cEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518        103 HISIHPSG---KLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       103 ~~~~~~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ..++.++.   ..+++++.|+.+..||.++++.+....
T Consensus       163 ~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          163 ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            22333332   457778889999999999999887664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.74  E-value=6.4e-06  Score=51.48  Aligned_cols=112  Identities=15%  Similarity=0.163  Sum_probs=83.2

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcc--
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA--  100 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~--  100 (139)
                      .+.+......++.+.+||.++.+.+.++...... ..++  +++..|..+..++.|.++|..+.+....+.....+.+  
T Consensus        74 ~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~  150 (243)
T 3mbr_X           74 RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLD  150 (243)
T ss_dssp             TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred             CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccc
Confidence            4555556668899999999999999988754333 3444  4667777777788999999999988887754433222  


Q ss_pred             -eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        101 -VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       101 -v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                       +..+.|. +|+..+..-.+..|.+.|.++++.+..+.+
T Consensus       151 ~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl  188 (243)
T 3mbr_X          151 NLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDL  188 (243)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEEC
T ss_pred             cceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEEC
Confidence             4566665 677666665688999999999999988875

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.73  E-value=1.4e-06  Score=58.57  Aligned_cols=114  Identities=12%  Similarity=0.108  Sum_probs=78.2

Q ss_pred             EEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCC--cEEEEEeCCceEEEEE
Q psy11518         17 VRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG--SIAIFRVGSWQLEKLF   92 (139)
Q Consensus        17 v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~   92 (139)
                      ...+.+  +++++++...++.|+.||+.++.......... ... ++|+++++.++.++.++  .|..++...+.....+
T Consensus       133 P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~  210 (409)
T 3hrp_A          133 MWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRI  210 (409)
T ss_dssp             EEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEE
T ss_pred             ceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEe
Confidence            334444  78888888888999999998776655444332 233 99999999888887765  7888887655433322


Q ss_pred             E-e-CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         93 K-K-AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        93 ~-~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      . . ......+.+++++|++..|+.+..++.|+.||..++..
T Consensus       211 g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~  252 (409)
T 3hrp_A          211 GQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEV  252 (409)
T ss_dssp             EECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCE
T ss_pred             eeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCE
Confidence            1 1 21233378899999544455577788999999987754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=98.73  E-value=7.4e-06  Score=51.89  Aligned_cols=114  Identities=9%  Similarity=0.052  Sum_probs=80.8

Q ss_pred             eeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE--ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         15 ASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM--QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      ..+..+..  ++.++++...++.|..+|.. ++.. .+.  .....+..++++++++++++...++.|..+|.. ++...
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~  138 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE  138 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE
Confidence            34455554  67777777778899999987 5432 222  234568899999999988888778889999987 55543


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      .. .......+..+++.+++++.++...++.|..||. +++..
T Consensus       139 ~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~  179 (300)
T 2qc5_A          139 YD-LPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE  179 (300)
T ss_dssp             EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE
T ss_pred             cc-CCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE
Confidence            22 2323334889999999997777777888999998 55443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.70  E-value=1.7e-06  Score=54.71  Aligned_cols=115  Identities=8%  Similarity=0.085  Sum_probs=85.4

Q ss_pred             Eec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCC
Q psy11518         20 VAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG   98 (139)
Q Consensus        20 ~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~   98 (139)
                      +.+ .+.+.+....++.+.+||.++.+.+.++...... ..++  +++..|+.+..++.|.++|..+.+....+.....+
T Consensus       101 it~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eG-wGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g  177 (268)
T 3nok_A          101 LASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEG-WGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRG  177 (268)
T ss_dssp             EEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSCC-CCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETT
T ss_pred             EEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCce-eEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCC
Confidence            444 3445555667899999999999999988753322 3333  57788887778899999999999888877554433


Q ss_pred             cc---eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         99 TA---VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        99 ~~---v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .+   +..+.|. +|+..+..-.+..|.+.|.++++.+..+.+
T Consensus       178 ~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl  219 (268)
T 3nok_A          178 QPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDA  219 (268)
T ss_dssp             EECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEEC
T ss_pred             cccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEEC
Confidence            22   4667776 777666665788999999999999988875

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=98.67  E-value=2.1e-06  Score=61.29  Aligned_cols=118  Identities=14%  Similarity=0.048  Sum_probs=78.0

Q ss_pred             EEecCCcEEEEeCC-----CCeEEEEEccC------Cc-eeeEEEecCCCeEEEEECCCCCEEEEecC----CCcEEEEE
Q psy11518         19 SVAATSKLAASSGA-----DETVVLYDMVK------RK-QSGALMQHEGTITCLKFTPEGSHLISCSD----DGSIAIFR   82 (139)
Q Consensus        19 ~~~~~~~~l~~~~~-----~~~v~i~~~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d   82 (139)
                      .++++|++|+..+.     +..|.+||+.+      +. ....+..+...+.. .|+|++..++..+.    .+.|.+||
T Consensus       239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d  317 (710)
T 2xdw_A          239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID  317 (710)
T ss_dssp             EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence            44558998876653     57899999986      43 45666666665554 58888887765443    23699999


Q ss_pred             eCCceE--EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCe--EEEEEcCCCceeEEEe
Q psy11518         83 VGSWQL--EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKT--LRTWNLVKGRSAYITN  137 (139)
Q Consensus        83 ~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~--i~i~d~~~~~~~~~~~  137 (139)
                      +.++..  ...+........+..++|++++.++++...++.  |.+||+.+++.+..+.
T Consensus       318 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~  376 (710)
T 2xdw_A          318 FTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP  376 (710)
T ss_dssp             TTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC
T ss_pred             CCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC
Confidence            877641  123312222224888999988888888888874  6677877777655443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.67  E-value=3.9e-07  Score=64.94  Aligned_cols=109  Identities=13%  Similarity=0.163  Sum_probs=72.5

Q ss_pred             EEecCCcEEE-----EeCCCCeEEEEEccCCceeeE-EEecCCCeEEEEECCCCCEEEEecCCC-------------cEE
Q psy11518         19 SVAATSKLAA-----SSGADETVVLYDMVKRKQSGA-LMQHEGTITCLKFTPEGSHLISCSDDG-------------SIA   79 (139)
Q Consensus        19 ~~~~~~~~l~-----~~~~~~~v~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~-------------~i~   79 (139)
                      ++++||++++     .|+....|+++|+.+++.+.. +...  ....++|+ |++.|+.+..+.             .|.
T Consensus       135 ~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~  211 (693)
T 3iuj_A          135 SFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVY  211 (693)
T ss_dssp             EECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEE
T ss_pred             EECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEE
Confidence            4556999888     344446899999999986543 2211  12567899 999888776663             389


Q ss_pred             EEEeCCceE--EEEEEeCC-CCcceeEEEEccCCcEEEEEc----CCCeEEEEEcCCC
Q psy11518         80 IFRVGSWQL--EKLFKKAH-KGTAVNHISIHPSGKLALSVG----KDKTLRTWNLVKG  130 (139)
Q Consensus        80 ~~d~~~~~~--~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~----~d~~i~i~d~~~~  130 (139)
                      +|++.+...  ...+.... .......+.|+|||++|+...    .+..|.++|+.++
T Consensus       212 ~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~  269 (693)
T 3iuj_A          212 FHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQE  269 (693)
T ss_dssp             EEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTST
T ss_pred             EEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCC
Confidence            999876542  23332222 112267899999999876543    2358999999776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=98.67  E-value=5.7e-07  Score=64.04  Aligned_cols=110  Identities=10%  Similarity=-0.012  Sum_probs=73.0

Q ss_pred             EEEecCCcEEEEeCCCCe-------------EEEEEccCCce----eeEEEecCCCeEEEEECCCCCEEEEecCCC----
Q psy11518         18 RSVAATSKLAASSGADET-------------VVLYDMVKRKQ----SGALMQHEGTITCLKFTPEGSHLISCSDDG----   76 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~-------------v~i~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~----   76 (139)
                      .++++||+.|+.++.+..             |.+|++.++..    +.....+...+..+.|+|+|++++..+.++    
T Consensus       173 ~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~  252 (695)
T 2bkl_A          173 PKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSEN  252 (695)
T ss_dssp             CEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEE
T ss_pred             eEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCce
Confidence            455569998888877665             99999988752    222233556788999999999988776655    


Q ss_pred             cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEc---CCCeEEEEEcCCCc
Q psy11518         77 SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG---KDKTLRTWNLVKGR  131 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~  131 (139)
                      .|.+++..++......  .+... +....+ +++.+++...   .++.|.+||+.+++
T Consensus       253 ~l~~~~~~~~~~~~l~--~~~~~-~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          253 DVYWKRPGEKDFRLLV--KGVGA-KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEEECTTCSSCEEEE--ECSSC-CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEEEEcCCCCceEEee--cCCCc-eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            5677765555443333  22323 455556 5666444444   35889999998765

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.63  E-value=4.8e-06  Score=54.46  Aligned_cols=114  Identities=12%  Similarity=0.072  Sum_probs=75.4

Q ss_pred             EecCCcEEEEeC--CCCeEEEEEccCCceeeEE-------EecCCCeEEEEECCCCCEEEEecC-----CCcEEEEEeCC
Q psy11518         20 VAATSKLAASSG--ADETVVLYDMVKRKQSGAL-------MQHEGTITCLKFTPEGSHLISCSD-----DGSIAIFRVGS   85 (139)
Q Consensus        20 ~~~~~~~l~~~~--~~~~v~i~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~~~d~~~   85 (139)
                      +.++++++++..  .++.+++|.+.+++. ..+       ..+-..+..++++++++++++-..     +..|..||+.+
T Consensus        24 ~~~~g~~~v~~~~~~~~~~~l~~~~~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~t  102 (343)
T 2qe8_A           24 LTPDGRLFLSLHQFYQPEMQVAELTQDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLN  102 (343)
T ss_dssp             ECTTSCEEEEECGGGCCSCSEEEEETTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTT
T ss_pred             ECCCCCEEEEeCCCCCCceEEEEECCCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCC
Confidence            344788888753  233255555544432 222       124467899999999887766544     57899999999


Q ss_pred             ceEEEEEEeCCC----CcceeEEEEccCC-cEEEEEc---CCCeEEEEEcCCCceeE
Q psy11518         86 WQLEKLFKKAHK----GTAVNHISIHPSG-KLALSVG---KDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        86 ~~~~~~~~~~~~----~~~v~~~~~~~~~-~~l~~~~---~d~~i~i~d~~~~~~~~  134 (139)
                      ++....+.....    ...+..+++++++ ..+++..   .++.|.+||+.+++...
T Consensus       103 g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r  159 (343)
T 2qe8_A          103 NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAAR  159 (343)
T ss_dssp             TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEE
T ss_pred             CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEE
Confidence            887776643211    1226889999864 4555555   67899999998877544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=98.63  E-value=5.1e-06  Score=53.14  Aligned_cols=118  Identities=6%  Similarity=0.045  Sum_probs=76.7

Q ss_pred             EEEEec--CCcEEEEeCCC---------------CeEEEEEccCCceeeEEEecCCCeEEEEEC----CCCCEE-EEecC
Q psy11518         17 VRSVAA--TSKLAASSGAD---------------ETVVLYDMVKRKQSGALMQHEGTITCLKFT----PEGSHL-ISCSD   74 (139)
Q Consensus        17 v~~~~~--~~~~l~~~~~~---------------~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l-~~~~~   74 (139)
                      +.++.+  ++.++++...+               +.|..++.. ++... +..+......++++    |+++.+ ++...
T Consensus       119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~  196 (314)
T 1pjx_A          119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECC
Confidence            344444  77777776654               567777765 44332 22333456889999    998655 45566


Q ss_pred             CCcEEEEEeC-CceEEE--EEE-eCCCC-cceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         75 DGSIAIFRVG-SWQLEK--LFK-KAHKG-TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        75 d~~i~~~d~~-~~~~~~--~~~-~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ++.|.+||.. ++....  .+. ..... ..+..++++++|+++++...++.|.+||.++++.+..+
T Consensus       197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~  263 (314)
T 1pjx_A          197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI  263 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE
T ss_pred             CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE
Confidence            7889999986 444211  111 11111 23788999999998888778889999999877655443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.56  E-value=3.1e-05  Score=52.04  Aligned_cols=109  Identities=8%  Similarity=-0.023  Sum_probs=78.3

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecC---------------CCeEEEEECCCCCEEEEec-CCCcEEE
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHE---------------GTITCLKFTPEGSHLISCS-DDGSIAI   80 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~---------------~~v~~~~~~~~~~~l~~~~-~d~~i~~   80 (139)
                      .++.+ ++.++++-..++.|..|+....  +..+.++.               .....++++|+++++++-. .++.|+.
T Consensus       272 ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~  349 (409)
T 3hrp_A          272 LIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRK  349 (409)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEE
T ss_pred             EEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEE
Confidence            44555 4667777778899999987543  33333332               3468999999999888877 8889999


Q ss_pred             EEeCCceEEEEEEeCCC------------CcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         81 FRVGSWQLEKLFKKAHK------------GTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      |+..++...........            -..+..+++++++.++++-..+++|+.++++
T Consensus       350 ~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          350 LDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred             EECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence            99877776554432100            1237899999999888888888999888763

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.55  E-value=1.3e-05  Score=51.45  Aligned_cols=108  Identities=10%  Similarity=0.082  Sum_probs=69.9

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEec----CCCeEEEEECCCCCEEEE----ecC-------------CCc
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQH----EGTITCLKFTPEGSHLIS----CSD-------------DGS   77 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~----~~~-------------d~~   77 (139)
                      .+.++|+++++...++.|..|+.. ++........    ...+..+.++|+|+++++    |..             .+.
T Consensus        92 ~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~  170 (305)
T 3dr2_A           92 AVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHS  170 (305)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEE
T ss_pred             eECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCe
Confidence            333478877777677889999975 5432221111    123567999999998886    332             245


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC------CeEEEEEcCCCc
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD------KTLRTWNLVKGR  131 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~  131 (139)
                      |..+|..+++.....   .... ...++|+|+++.|+.+...      +.|..|++..+.
T Consensus       171 v~~~d~~~g~~~~~~---~~~~-p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~  226 (305)
T 3dr2_A          171 VYRLPPDGSPLQRMA---DLDH-PNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA  226 (305)
T ss_dssp             EEEECSSSCCCEEEE---EESS-EEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE
T ss_pred             EEEEcCCCCcEEEEe---cCCC-CcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC
Confidence            666776555543332   1222 6789999999977776554      789999987543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.54  E-value=2.3e-05  Score=51.63  Aligned_cols=110  Identities=15%  Similarity=0.137  Sum_probs=78.0

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecC---------CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHE---------GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .+..+++++.++.|..+|.++++.+.......         ..+.. ....++..+..++.++.|..+|..+++..+...
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSG-GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEE-EEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccccc-CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            56778888889999999999999887766421         22222 122245577778888999999999999988774


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .....  ......  .+..+++++.++.|..+|.++++.+....
T Consensus       131 ~~~~~--~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~  170 (376)
T 3q7m_A          131 VAGEA--LSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVN  170 (376)
T ss_dssp             CSSCC--CSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCce--EcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEe
Confidence            43221  111122  24577788889999999999999887664

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.53  E-value=5.9e-06  Score=55.83  Aligned_cols=91  Identities=9%  Similarity=0.034  Sum_probs=68.3

Q ss_pred             eeeEEEEEeecceeeEEEEecCCcEEEEeC----------CCCeEEEEEccCCceeeEEEec-------CCCeEEEEECC
Q psy11518          2 YTLTQTFVTHSHTASVRSVAATSKLAASSG----------ADETVVLYDMVKRKQSGALMQH-------EGTITCLKFTP   64 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~----------~~~~v~i~~~~~~~~~~~~~~~-------~~~v~~~~~~~   64 (139)
                      ++.+.++......  -..++++++.++++.          .++.|.++|..+.+.+.++.--       ......+.++|
T Consensus       109 ~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~sp  186 (426)
T 3c75_H          109 GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTP  186 (426)
T ss_dssp             TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECT
T ss_pred             CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcC
Confidence            3455666654443  467778999888776          3678999999999988877532       12345789999


Q ss_pred             CCCEEEEecC--CCcEEEEEeCCceEEEEEEe
Q psy11518         65 EGSHLISCSD--DGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        65 ~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~   94 (139)
                      ++++++.+..  ++.|.+.|+.+++....+..
T Consensus       187 DGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v  218 (426)
T 3c75_H          187 DNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV  218 (426)
T ss_dssp             TSSEEEEEECSSSCEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEecCCCCeEEEEECCCCeEEEEEEc
Confidence            9999988764  57899999999998888754

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.52  E-value=2.8e-05  Score=49.91  Aligned_cols=112  Identities=8%  Similarity=-0.008  Sum_probs=76.4

Q ss_pred             EEecCCc-EEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEe--C
Q psy11518         19 SVAATSK-LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKK--A   95 (139)
Q Consensus        19 ~~~~~~~-~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~   95 (139)
                      .+.++++ ++++...++.|..|+. +++ ...+..+...+..+.++++++++++...++.|..|+.. +........  .
T Consensus        51 ~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~  127 (305)
T 3dr2_A           51 AWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAG  127 (305)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETT
T ss_pred             eEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCC
Confidence            3445676 6778888899999997 444 44555566778999999999987777667789999976 554332211  1


Q ss_pred             CCCcceeEEEEccCCcEEEE----EcC-------------CCeEEEEEcCCCcee
Q psy11518         96 HKGTAVNHISIHPSGKLALS----VGK-------------DKTLRTWNLVKGRSA  133 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~----~~~-------------d~~i~i~d~~~~~~~  133 (139)
                      .....+.+++++++|++.++    |..             .+.|..||..+++..
T Consensus       128 ~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~  182 (305)
T 3dr2_A          128 KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQ  182 (305)
T ss_dssp             EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCE
T ss_pred             CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEE
Confidence            11122678999999998886    332             256778887666543

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.52  E-value=9.8e-06  Score=56.68  Aligned_cols=91  Identities=15%  Similarity=0.175  Sum_probs=63.8

Q ss_pred             eEEEEEccC--Cce-eeEEEecCCCeEEEEECCCCCEEEEe-cCCCcEEEEEeCCce------------EEEEEEeCCCC
Q psy11518         35 TVVLYDMVK--RKQ-SGALMQHEGTITCLKFTPEGSHLISC-SDDGSIAIFRVGSWQ------------LEKLFKKAHKG   98 (139)
Q Consensus        35 ~v~i~~~~~--~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~------------~~~~~~~~~~~   98 (139)
                      .|.+.|..+  ++. +..+..-. ...++.++|||++++.+ ..+..|.++|+.+.+            .....   ..+
T Consensus       255 ~V~VID~~~~~~~~~~~~Ipvg~-~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v---~vG  330 (595)
T 1fwx_A          255 GVKVVDGRKEASSLFTRYIPIAN-NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP---ELG  330 (595)
T ss_dssp             TEEEEECSGGGCCSSEEEEEEES-SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC---BCC
T ss_pred             cEEEEeCcccCCceeEEEEecCC-CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc---CCC
Confidence            377777766  444 44444322 34789999999987655 458899999998653            22322   223


Q ss_pred             cceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         99 TAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ..+..++|+|+|...++...|++|.+||+.+
T Consensus       331 ~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          331 LGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             SCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             CCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            3389999999995556667899999999977

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.51  E-value=4e-06  Score=56.81  Aligned_cols=115  Identities=11%  Similarity=0.129  Sum_probs=80.8

Q ss_pred             CCcEE-EEeCCCCeEEEEEccCC----ceeeEEE------e-cCCCeEEEEECCCCCEEEEecCC------CcEEEEEeC
Q psy11518         23 TSKLA-ASSGADETVVLYDMVKR----KQSGALM------Q-HEGTITCLKFTPEGSHLISCSDD------GSIAIFRVG   84 (139)
Q Consensus        23 ~~~~l-~~~~~~~~v~i~~~~~~----~~~~~~~------~-~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~   84 (139)
                      +++++ +.+..++.|.++|+.+.    +...++.      . ....-..+..+|++ .++++..+      +.+.++|..
T Consensus        94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~  172 (462)
T 2ece_A           94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY  172 (462)
T ss_dssp             CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred             cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence            45554 55667889999998754    3444442      0 11134567788999 66666555      689999999


Q ss_pred             CceEEEEEEeCCCC-cceeEEEEccCCcEEEEEc-------------------CCCeEEEEEcCCCceeEEEec
Q psy11518         85 SWQLEKLFKKAHKG-TAVNHISIHPSGKLALSVG-------------------KDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        85 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-------------------~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +.+.+..+...... .-...+.|+|+++.+++..                   .+.+|.+||+.+++.+..+.+
T Consensus       173 T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v  246 (462)
T 2ece_A          173 SFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL  246 (462)
T ss_dssp             TCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred             CCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence            99999888433221 2134588899999888884                   368999999999888777654

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.49  E-value=5.8e-06  Score=56.06  Aligned_cols=110  Identities=9%  Similarity=0.111  Sum_probs=79.1

Q ss_pred             EecCCcEEEEeCCC------CeEEEEEccCCceeeEEEecCC---CeEEEEECCCCCEEEEec-----------------
Q psy11518         20 VAATSKLAASSGAD------ETVVLYDMVKRKQSGALMQHEG---TITCLKFTPEGSHLISCS-----------------   73 (139)
Q Consensus        20 ~~~~~~~l~~~~~~------~~v~i~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~-----------------   73 (139)
                      +.++| +++++..+      +.|.++|.++.+.+.+......   .-..+.|+|+++.+++..                 
T Consensus       145 ~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~  223 (462)
T 2ece_A          145 CGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLK  223 (462)
T ss_dssp             ECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHH
T ss_pred             ECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhh
Confidence            34577 66666555      7899999999998887763211   123577899999988885                 


Q ss_pred             --CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEE--ccCCcEEEEEc------CCCeEEEEEcCCC
Q psy11518         74 --DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISI--HPSGKLALSVG------KDKTLRTWNLVKG  130 (139)
Q Consensus        74 --~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~------~d~~i~i~d~~~~  130 (139)
                        ....|.+||+.+++....+.....+.....+.|  +|++++++++.      .++.|.+|....+
T Consensus       224 ~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g  290 (462)
T 2ece_A          224 DRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG  290 (462)
T ss_dssp             HHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred             hccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence              367899999999988888855433333566666  99999887776      4568877766544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.47  E-value=6.8e-06  Score=57.54  Aligned_cols=113  Identities=12%  Similarity=0.081  Sum_probs=79.2

Q ss_pred             CCc---EEEEeCCCCeEEEEEccCCceeeEEEecC-------------CCe--------------------------EEE
Q psy11518         23 TSK---LAASSGADETVVLYDMVKRKQSGALMQHE-------------GTI--------------------------TCL   60 (139)
Q Consensus        23 ~~~---~l~~~~~~~~v~i~~~~~~~~~~~~~~~~-------------~~v--------------------------~~~   60 (139)
                      +|+   .++.++.+|.+.++|..+++.+.......             .++                          ..+
T Consensus       312 ~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~  391 (571)
T 2ad6_A          312 NGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVD  391 (571)
T ss_dssp             TTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBC
T ss_pred             CCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCc
Confidence            563   57788999999999999998887664221             011                          134


Q ss_pred             EECCCCCEEEEec-------------------------------------CCCcEEEEEeCCceEEEEEEeCCCCcceeE
Q psy11518         61 KFTPEGSHLISCS-------------------------------------DDGSIAIFRVGSWQLEKLFKKAHKGTAVNH  103 (139)
Q Consensus        61 ~~~~~~~~l~~~~-------------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~  103 (139)
                      +++|+...+....                                     .++.|..||..+++..+.+.....   +..
T Consensus       392 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~---~~~  468 (571)
T 2ad6_A          392 SYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWG  468 (571)
T ss_dssp             EEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCS
T ss_pred             eECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC---ccc
Confidence            6777666655432                                     357899999999999888754332   222


Q ss_pred             EEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        104 ISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       104 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ......+..++.++.|+.++.||.++++.+..+.+
T Consensus       469 ~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~  503 (571)
T 2ad6_A          469 GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence            22223456777799999999999999999988764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.46  E-value=1.4e-05  Score=56.91  Aligned_cols=116  Identities=10%  Similarity=0.084  Sum_probs=80.7

Q ss_pred             EecCCc---EEEEeCCCCeEEEEEccCCceeeEEEecCC------------Ce------------------------EEE
Q psy11518         20 VAATSK---LAASSGADETVVLYDMVKRKQSGALMQHEG------------TI------------------------TCL   60 (139)
Q Consensus        20 ~~~~~~---~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~------------~v------------------------~~~   60 (139)
                      +..+++   .++.++.+|.+.++|..+++.+........            ++                        ..+
T Consensus       307 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~  386 (668)
T 1kv9_A          307 LNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSM  386 (668)
T ss_dssp             EEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCC
T ss_pred             eccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcc
Confidence            334665   688999999999999999988754432110            00                        015


Q ss_pred             EECCCCCEEEEe------------------------------------cCCCcEEEEEeCCceEEEEEEeCCCCcceeEE
Q psy11518         61 KFTPEGSHLISC------------------------------------SDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHI  104 (139)
Q Consensus        61 ~~~~~~~~l~~~------------------------------------~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~  104 (139)
                      +++|+...+...                                    ..+|.|..||..+++..+.......   ....
T Consensus       387 a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~---~~~~  463 (668)
T 1kv9_A          387 SFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH---WNGG  463 (668)
T ss_dssp             EEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS---CCCC
T ss_pred             eECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC---CcCc
Confidence            666665554421                                    1247899999999999888754322   2333


Q ss_pred             EEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        105 SIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       105 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .+...+.++++++.|+.++.||.++++.+..+.+
T Consensus       464 ~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~  497 (668)
T 1kv9_A          464 TLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (668)
T ss_dssp             EEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             eeEeCCCEEEEECCcccchhhhhhcChhheEecC
Confidence            3445678888899999999999999999987753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.44  E-value=1.1e-05  Score=57.50  Aligned_cols=115  Identities=13%  Similarity=0.160  Sum_probs=82.4

Q ss_pred             CcEEEEeCC------CCeEEEEEccCCceeeEEEecCCC--------------------------------eEEEEECCC
Q psy11518         24 SKLAASSGA------DETVVLYDMVKRKQSGALMQHEGT--------------------------------ITCLKFTPE   65 (139)
Q Consensus        24 ~~~l~~~~~------~~~v~i~~~~~~~~~~~~~~~~~~--------------------------------v~~~~~~~~   65 (139)
                      +..+++++.      ++.|..+|..+++.+..+......                                ...++++|+
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            445555543      689999999999998877642211                                124678888


Q ss_pred             CCEEEEecCCC-------------------cEEEEEeCCceEEEEEEeCCCC-------cceeEEEEccCC---cEEEEE
Q psy11518         66 GSHLISCSDDG-------------------SIAIFRVGSWQLEKLFKKAHKG-------TAVNHISIHPSG---KLALSV  116 (139)
Q Consensus        66 ~~~l~~~~~d~-------------------~i~~~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~---~~l~~~  116 (139)
                      +..++.+..++                   .|..+|..+++.++.+...++.       ..+.-+....+|   ..++.+
T Consensus       254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~  333 (677)
T 1kb0_A          254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA  333 (677)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence            88888776653                   4999999999999998654331       112223334477   678899


Q ss_pred             cCCCeEEEEEcCCCceeEEEec
Q psy11518        117 GKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       117 ~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +.+|.++++|.++|+.+..+.+
T Consensus       334 ~~~G~l~~lD~~tG~~l~~~~~  355 (677)
T 1kb0_A          334 PKNGFFFVLDRTNGKFISAKNF  355 (677)
T ss_dssp             CTTSEEEEEETTTCCEEEEEES
T ss_pred             CCCCEEEEEECCCCCEeccccc
Confidence            9999999999999999877653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.39  E-value=1.7e-05  Score=55.62  Aligned_cols=111  Identities=12%  Similarity=0.112  Sum_probs=76.6

Q ss_pred             cEEEEeCCCCeEEEEEccCCceeeEEEecCC------------C-e--------------------------------EE
Q psy11518         25 KLAASSGADETVVLYDMVKRKQSGALMQHEG------------T-I--------------------------------TC   59 (139)
Q Consensus        25 ~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~------------~-v--------------------------------~~   59 (139)
                      ..++.++.+|.+.++|..+++.+..+.....            . +                                ..
T Consensus       337 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  416 (582)
T 1flg_A          337 KATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNP  416 (582)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSC
T ss_pred             EEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCC
Confidence            3788899999999999999988876653310            0 0                                12


Q ss_pred             EEECCCCCEEEEec---------------------------------CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEE
Q psy11518         60 LKFTPEGSHLISCS---------------------------------DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISI  106 (139)
Q Consensus        60 ~~~~~~~~~l~~~~---------------------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~  106 (139)
                      ++++|+...+....                                 .+|.|..||+.+++..+.......   ...-..
T Consensus       417 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~  493 (582)
T 1flg_A          417 MAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLP---LWAGVL  493 (582)
T ss_dssp             CEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSC---CCSCCE
T ss_pred             ceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCC---Ccccce
Confidence            45666544443321                                 357899999999999888754322   211111


Q ss_pred             ccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        107 HPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       107 ~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ...+.+++.++.|+.++.||.++|+.+.++.+
T Consensus       494 ~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~  525 (582)
T 1flg_A          494 ATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence            22466777899999999999999999988764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.37  E-value=5.6e-05  Score=49.81  Aligned_cols=109  Identities=6%  Similarity=0.011  Sum_probs=78.3

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      .+..++.++.++.+..+|..+++.+.....  .....+..  ++..+..++.++.+..+|..+++..+......... +.
T Consensus       238 ~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~  312 (376)
T 3q7m_A          238 VNGVVFALAYNGNLTALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRL-LT  312 (376)
T ss_dssp             ETTEEEEECTTSCEEEEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSC-CC
T ss_pred             ECCEEEEEecCcEEEEEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCc-cc
Confidence            456777788899999999999988776542  23344443  45677777788999999999999888763121111 22


Q ss_pred             EEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        103 HISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ....  .+..++.++.+|.+.++|.++++.+....+
T Consensus       313 ~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~  346 (376)
T 3q7m_A          313 SPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKV  346 (376)
T ss_dssp             CCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence            2222  256788888999999999999998877654

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=98.35  E-value=6.4e-05  Score=54.03  Aligned_cols=112  Identities=14%  Similarity=0.135  Sum_probs=71.5

Q ss_pred             EEecCCcEEEEeCCC-----CeEEEEEccCC--ceeeEEEecCCCeEEEEECCCCCEEEEecC----CCcEEEEEeCCc-
Q psy11518         19 SVAATSKLAASSGAD-----ETVVLYDMVKR--KQSGALMQHEGTITCLKFTPEGSHLISCSD----DGSIAIFRVGSW-   86 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~-----~~v~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~-   86 (139)
                      .++++|++|+..+.+     ..|.+||+.++  +....+..+...+.... +|+++.|+..+.    ++.|.+||+.++ 
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~  352 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGST  352 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSS
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCc
Confidence            344589888766643     48999999877  31455555554544443 488887776554    345999998874 


Q ss_pred             -eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC-CCceeE
Q psy11518         87 -QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV-KGRSAY  134 (139)
Q Consensus        87 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~  134 (139)
                       .....+  .+....+..++|. ++.++++...|+..++|.+. +++.+.
T Consensus       353 ~~~~~l~--~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  399 (741)
T 1yr2_A          353 PRFDTVV--PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG  399 (741)
T ss_dssp             CEEEEEE--CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred             cccEEEe--cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence             333333  3333337778887 66778888888887777554 344443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.34  E-value=4.1e-05  Score=54.80  Aligned_cols=105  Identities=13%  Similarity=0.126  Sum_probs=75.6

Q ss_pred             CCeEEEEEccCCceeeEEEecC-------------------------------CCeEEEEECCCCCEEEEecCCCc----
Q psy11518         33 DETVVLYDMVKRKQSGALMQHE-------------------------------GTITCLKFTPEGSHLISCSDDGS----   77 (139)
Q Consensus        33 ~~~v~i~~~~~~~~~~~~~~~~-------------------------------~~v~~~~~~~~~~~l~~~~~d~~----   77 (139)
                      ++.|..||..+++.+..+....                               ..-..++++|+...++.+..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            6899999999999988775210                               01124678888888888877753    


Q ss_pred             ---------------EEEEEeCCceEEEEEEeCCCC-------cceeEEEEccCCc---EEEEEcCCCeEEEEEcCCCce
Q psy11518         78 ---------------IAIFRVGSWQLEKLFKKAHKG-------TAVNHISIHPSGK---LALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        78 ---------------i~~~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~  132 (139)
                                     |..+|..+++.++.+...++.       .++.-.....+|+   .++.++.+|.++++|.++|+.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           999999999999988543221       1122222233565   788899999999999999999


Q ss_pred             eEEEe
Q psy11518        133 AYITN  137 (139)
Q Consensus       133 ~~~~~  137 (139)
                      +....
T Consensus       342 l~~~~  346 (689)
T 1yiq_A          342 LSAKG  346 (689)
T ss_dssp             EEEEE
T ss_pred             ecccc
Confidence            86544

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.34  E-value=9.2e-06  Score=53.93  Aligned_cols=75  Identities=7%  Similarity=0.029  Sum_probs=58.7

Q ss_pred             EEECCCCCEEEEecC---------CCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc-EEEEEc-CCCeEEEEEcC
Q psy11518         60 LKFTPEGSHLISCSD---------DGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-LALSVG-KDKTLRTWNLV  128 (139)
Q Consensus        60 ~~~~~~~~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~-~d~~i~i~d~~  128 (139)
                      +.++|+++.+..+..         ++.+.++|..+.+.+..+....   ....++|+||++ .+++.. .++.|.++|+.
T Consensus       269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            679999888775432         2356699999999888775443   288999999998 456666 59999999999


Q ss_pred             CCceeEEEe
Q psy11518        129 KGRSAYITN  137 (139)
Q Consensus       129 ~~~~~~~~~  137 (139)
                      +++.+..+.
T Consensus       346 t~kvv~~I~  354 (368)
T 1mda_H          346 SDQDQSSVE  354 (368)
T ss_dssp             SCEEEEECC
T ss_pred             CCcEEEEEE
Confidence            999988765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=98.33  E-value=0.00014  Score=46.47  Aligned_cols=94  Identities=10%  Similarity=0.133  Sum_probs=66.4

Q ss_pred             EEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeC--
Q psy11518         19 SVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA--   95 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--   95 (139)
                      .+.+ ++.++++...++.|..||..+++. ..+ .....+.+++++++++++++.  +..|..||..+++........  
T Consensus        19 ~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~   94 (297)
T 3g4e_A           19 VWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRV-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDND   94 (297)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTTCCE-EEE-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTT
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCcE-EEE-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCC
Confidence            3344 566778888899999999987754 223 345678999999999966554  457999999887765443221  


Q ss_pred             CCCcceeEEEEccCCcEEEEE
Q psy11518         96 HKGTAVNHISIHPSGKLALSV  116 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~~  116 (139)
                      .....+.+++++|+|+++++.
T Consensus        95 ~~~~~~~di~~d~dG~l~~~~  115 (297)
T 3g4e_A           95 KKNNRFNDGKVDPAGRYFAGT  115 (297)
T ss_dssp             CSSEEEEEEEECTTSCEEEEE
T ss_pred             CCCCCCCCEEECCCCCEEEec
Confidence            122347889999999976654

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.32  E-value=0.00017  Score=46.84  Aligned_cols=118  Identities=8%  Similarity=0.060  Sum_probs=72.6

Q ss_pred             eEEEEec--CCcEEEEeCC------CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEEEeC--
Q psy11518         16 SVRSVAA--TSKLAASSGA------DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVG--   84 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~------~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~--   84 (139)
                      .+.++.+  +|+++++...      .+.|..++  +++. ..+..+......++|+|+++.++ +...++.|.+||..  
T Consensus       135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~  211 (326)
T 2ghs_A          135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDAR  211 (326)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred             CCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccc
Confidence            4455554  7776665432      24455555  4433 23333334567899999998764 44567889999986  


Q ss_pred             Cc-eE--EEEEE-eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         85 SW-QL--EKLFK-KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        85 ~~-~~--~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++ ..  ...+. .......+..+++.++|.+.++...++.|..||. +++.+..+.
T Consensus       212 ~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~  267 (326)
T 2ghs_A          212 TGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE  267 (326)
T ss_dssp             TCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE
T ss_pred             cCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE
Confidence            44 21  11121 1112223778999999987777766788999998 566655443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.26  E-value=0.00023  Score=46.17  Aligned_cols=96  Identities=6%  Similarity=0.036  Sum_probs=63.7

Q ss_pred             EEecCCcEE-EEeCCCCeEEEEEcc--CC-cee--eEEE---ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         19 SVAATSKLA-ASSGADETVVLYDMV--KR-KQS--GALM---QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        19 ~~~~~~~~l-~~~~~~~~v~i~~~~--~~-~~~--~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      +++++++.+ ++...++.|.+|++.  ++ ...  ..+.   ........+.++++++++++...++.|..||. +++..
T Consensus       185 ~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~  263 (326)
T 2ghs_A          185 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHI  263 (326)
T ss_dssp             EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEE
T ss_pred             EEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEE
Confidence            444577765 455667899999985  55 321  1222   23345678999999988877766778999998 56666


Q ss_pred             EEEEeCCCCcceeEEEEc-cCCcEEEEEc
Q psy11518         90 KLFKKAHKGTAVNHISIH-PSGKLALSVG  117 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  117 (139)
                      ..+... .. .+.+++|+ ++++.|++++
T Consensus       264 ~~i~~~-~~-~~~~~af~g~d~~~L~vt~  290 (326)
T 2ghs_A          264 ARYEVP-GK-QTTCPAFIGPDASRLLVTS  290 (326)
T ss_dssp             EEEECS-CS-BEEEEEEESTTSCEEEEEE
T ss_pred             EEEECC-CC-CcEEEEEecCCCCEEEEEe
Confidence            665332 22 38999998 8877665443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.25  E-value=9.7e-05  Score=48.29  Aligned_cols=111  Identities=10%  Similarity=0.073  Sum_probs=73.2

Q ss_pred             eeEEEEec--CCcEEEEeCC-----CCeEEEEEccCCceeeEEEec------CCCeEEEEECCCC-CEEEEec---CCCc
Q psy11518         15 ASVRSVAA--TSKLAASSGA-----DETVVLYDMVKRKQSGALMQH------EGTITCLKFTPEG-SHLISCS---DDGS   77 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~~~~-----~~~v~i~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~---~d~~   77 (139)
                      ..+..+.+  +++++++-..     ++.|.+||+.+++.+..+...      ...+..+++++++ ..+++..   .++.
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA  146 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence            45666666  5666665443     578999999988876666532      2345789999754 4445555   6788


Q ss_pred             EEEEEeCCceEEEEEEeCCC----------------------------CcceeEEEEccCCcEEEEEcCCC-eEEEEE
Q psy11518         78 IAIFRVGSWQLEKLFKKAHK----------------------------GTAVNHISIHPSGKLALSVGKDK-TLRTWN  126 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~----------------------------~~~v~~~~~~~~~~~l~~~~~d~-~i~i~d  126 (139)
                      |.+||..+++....+. .+.                            ...+..++|+|+++.|+.+..++ .+..++
T Consensus       147 i~v~d~~~g~~~r~~~-~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~  223 (343)
T 2qe8_A          147 LIRVDLQTGLAARVLQ-GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK  223 (343)
T ss_dssp             EEEEETTTCCEEEECT-TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred             EEEEECCCCCEEEEec-CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence            9999998777655431 100                            01257899999999888776554 555554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.23  E-value=5.2e-05  Score=53.46  Aligned_cols=62  Identities=13%  Similarity=0.054  Sum_probs=45.2

Q ss_pred             CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         74 DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        74 ~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ..|.|..||+.+++..+.......   ...-.....+..++.++.|+.++.||.++|+.+.++.+
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~~~---~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l  512 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMERFA---VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CcCeEEEEECCCCCEEeEecCCCC---ccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence            347899999999998888744321   11111222566777799999999999999999988764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.21  E-value=0.00011  Score=52.45  Aligned_cols=105  Identities=15%  Similarity=0.181  Sum_probs=75.0

Q ss_pred             CCeEEEEEccCCceeeEEEecC---C----------------------------CeEEEEECCCCCEEEEecCCC-----
Q psy11518         33 DETVVLYDMVKRKQSGALMQHE---G----------------------------TITCLKFTPEGSHLISCSDDG-----   76 (139)
Q Consensus        33 ~~~v~i~~~~~~~~~~~~~~~~---~----------------------------~v~~~~~~~~~~~l~~~~~d~-----   76 (139)
                      ++.|..+|..+++.+..+....   .                            ....++++|+...++.+..++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            5899999999999988875310   0                            011357788777887777665     


Q ss_pred             --------------cEEEEEeCCceEEEEEEeCCCC-------cceeEEEEccCCc---EEEEEcCCCeEEEEEcCCCce
Q psy11518         77 --------------SIAIFRVGSWQLEKLFKKAHKG-------TAVNHISIHPSGK---LALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        77 --------------~i~~~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~l~~~~~d~~i~i~d~~~~~~  132 (139)
                                    .|..+|..+++.++.+...++.       .++....+..+++   .++.++.+|.++++|.++|+.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          3999999999999998654321       1222223334665   688899999999999999999


Q ss_pred             eEEEe
Q psy11518        133 AYITN  137 (139)
Q Consensus       133 ~~~~~  137 (139)
                      +....
T Consensus       337 l~~~~  341 (668)
T 1kv9_A          337 ISAEK  341 (668)
T ss_dssp             EEEEE
T ss_pred             ecccc
Confidence            85543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.16  E-value=3.2e-05  Score=55.78  Aligned_cols=111  Identities=13%  Similarity=0.056  Sum_probs=71.0

Q ss_pred             eEEEEe-cCCcEEEEeC-----CCCeEEEEEccCC-ceee-EEEecCCCeEEEEECCCCCEEEEecCC-----CcEEEEE
Q psy11518         16 SVRSVA-ATSKLAASSG-----ADETVVLYDMVKR-KQSG-ALMQHEGTITCLKFTPEGSHLISCSDD-----GSIAIFR   82 (139)
Q Consensus        16 ~v~~~~-~~~~~l~~~~-----~~~~v~i~~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d   82 (139)
                      .-..++ +||++|+-+.     ....|.++|+.++ +.+. .+...   ...++|+|+++.|+....+     ..|..++
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~---~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGT---NGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEE---CSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCc---eeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            345778 8898877432     2236999999988 6332 12211   2467899999888766554     2577788


Q ss_pred             eCCce--EEEEEEeCCCCcceeEEEEccCCcEEEEEc---CCCeEEEEEcCCC
Q psy11518         83 VGSWQ--LEKLFKKAHKGTAVNHISIHPSGKLALSVG---KDKTLRTWNLVKG  130 (139)
Q Consensus        83 ~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~  130 (139)
                      +.++.  ....+....... ...+.|+|||++|+...   ....|.++|+.++
T Consensus       254 lgt~~~~~~lv~~~~~~~~-~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLF-SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTC-EEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred             CCCCchhcEEEEecCCCce-EEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence            76653  223332222222 56789999999887655   3456888899875

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.09  E-value=0.00015  Score=50.86  Aligned_cols=105  Identities=13%  Similarity=0.104  Sum_probs=75.3

Q ss_pred             cCCcEEEEeC------------------CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCC-------
Q psy11518         22 ATSKLAASSG------------------ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG-------   76 (139)
Q Consensus        22 ~~~~~l~~~~------------------~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-------   76 (139)
                      ++++++++++                  .++.+.+.|.++.+...++.--. ....++.+|+++++++.+.+.       
T Consensus       145 p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~  223 (595)
T 1fwx_A          145 PRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLP  223 (595)
T ss_dssp             SBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHH
T ss_pred             CCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchh
Confidence            5788888773                  34689999999998888876433 346778999999988776443       


Q ss_pred             -------------------------------cEEEEEeCC--ceE-EEEEEeCCCCcceeEEEEccCCcEEEEEc-CCCe
Q psy11518         77 -------------------------------SIAIFRVGS--WQL-EKLFKKAHKGTAVNHISIHPSGKLALSVG-KDKT  121 (139)
Q Consensus        77 -------------------------------~i~~~d~~~--~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~  121 (139)
                                                     .|.+.|..+  +.. ...+....   .+.++.++|||+++++++ .+.+
T Consensus       224 ~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~---~PhGv~~sPDGk~v~V~~~~s~~  300 (595)
T 1fwx_A          224 EMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPT  300 (595)
T ss_dssp             HHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSB
T ss_pred             hccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCC---CceEEEEcCCCCEEEEeCCCCCe
Confidence                                           366666665  333 34442222   267799999999877766 6889


Q ss_pred             EEEEEcCCC
Q psy11518        122 LRTWNLVKG  130 (139)
Q Consensus       122 i~i~d~~~~  130 (139)
                      |.++|+.+.
T Consensus       301 VsVid~~~~  309 (595)
T 1fwx_A          301 VTVLDVTRF  309 (595)
T ss_dssp             EEEEEGGGH
T ss_pred             EEEEECccc
Confidence            999999864

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.04  E-value=0.00022  Score=45.87  Aligned_cols=104  Identities=11%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeE
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNH  103 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~  103 (139)
                      +..+..++.++.|..+|.. ++...........+.++...+++. +..++.++.|..+|.. ++....+...  ...+.+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~--~~~~~~  181 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN--DAITSA  181 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS--SCCCSC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC--CCceee
Confidence            5567778888899999987 777766665555556667776776 4456677889999988 7777666332  222666


Q ss_pred             EEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518        104 ISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       104 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +...+++.+.+ ++  +.+..+| .+++.+...
T Consensus       182 ~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~  210 (330)
T 3hxj_A          182 ASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNF  210 (330)
T ss_dssp             CEECTTCCEEE-ES--SSEEEEC-TTSCEEEEE
T ss_pred             eEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEE
Confidence            77777776444 44  7788889 777666554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.01  E-value=0.00033  Score=44.98  Aligned_cols=104  Identities=10%  Similarity=0.050  Sum_probs=71.7

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeE
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNH  103 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~  103 (139)
                      +..+..++.++.|..+|.. ++.+..+......+.++...+++..++..   +.|..+| .+++........ . ..+.+
T Consensus       147 ~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~-~-~~~~~  219 (330)
T 3hxj_A          147 DGTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAG-Y-WTVTR  219 (330)
T ss_dssp             TSCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCS-S-CCCSC
T ss_pred             CCEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccC-C-cceec
Confidence            4446667888999999988 77777766555566777777787766554   7799999 777777666322 2 33777


Q ss_pred             EEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518        104 ISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       104 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +...+++. +..++.++.+..+|. +++.+..+
T Consensus       220 ~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~  250 (330)
T 3hxj_A          220 PAISEDGT-IYVTSLDGHLYAINP-DGTEKWRF  250 (330)
T ss_dssp             CEECTTSC-EEEEETTTEEEEECT-TSCEEEEE
T ss_pred             eEECCCCe-EEEEcCCCeEEEECC-CCCEeEEe
Confidence            88887775 455566777888874 55555443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.98  E-value=0.00054  Score=48.73  Aligned_cols=115  Identities=7%  Similarity=0.010  Sum_probs=74.1

Q ss_pred             EEec-CCcEEEEeCCCC-----------eEEEEEccCCce--eeEEEe-cCCCeEEEEECCCCCEEEEecC-CCcEEEEE
Q psy11518         19 SVAA-TSKLAASSGADE-----------TVVLYDMVKRKQ--SGALMQ-HEGTITCLKFTPEGSHLISCSD-DGSIAIFR   82 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~~-----------~v~i~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d   82 (139)
                      ++.+ ++++++.|+.+.           .+.+||+.+++-  +..+.. +.....+.++.++++.++.|+. +..+.+||
T Consensus       192 av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd  271 (656)
T 1k3i_A          192 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  271 (656)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEec
Confidence            4445 788888876432           688999887642  223322 2223345677889999998884 45799999


Q ss_pred             eCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEc-CC-----CeEEEEEcCCCceeE
Q psy11518         83 VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVG-KD-----KTLRTWNLVKGRSAY  134 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----~~i~i~d~~~~~~~~  134 (139)
                      ..+.+....-....... -.+++..+++++++.|+ .+     ..+.+||..+.+...
T Consensus       272 ~~t~~W~~~~~~~~~R~-~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~  328 (656)
T 1k3i_A          272 SSSDSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS  328 (656)
T ss_dssp             GGGTEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             CcCCceeECCCCCcccc-ccceEEecCCeEEEEeCcccCCcccccceEeCCCCCccee
Confidence            88765443321111111 23456667999999998 34     569999998876543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.95  E-value=0.00079  Score=47.56  Aligned_cols=106  Identities=10%  Similarity=0.047  Sum_probs=73.9

Q ss_pred             CCCeEEEEEccCCceeeEEEecCCC-------------------------------------e-EEEEECCCCCEEEEec
Q psy11518         32 ADETVVLYDMVKRKQSGALMQHEGT-------------------------------------I-TCLKFTPEGSHLISCS   73 (139)
Q Consensus        32 ~~~~v~i~~~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~   73 (139)
                      .++.|..+|.++++.+..+......                                     + ...++.++...+..+.
T Consensus       180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~  259 (599)
T 1w6s_A          180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT  259 (599)
T ss_dssp             CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence            3789999999999998877642211                                     0 1245566666666665


Q ss_pred             CC----------------CcEEEEEeCCceEEEEEEeCCCCc-------ceeEEEEc-cCC---cEEEEEcCCCeEEEEE
Q psy11518         74 DD----------------GSIAIFRVGSWQLEKLFKKAHKGT-------AVNHISIH-PSG---KLALSVGKDKTLRTWN  126 (139)
Q Consensus        74 ~d----------------~~i~~~d~~~~~~~~~~~~~~~~~-------~v~~~~~~-~~~---~~l~~~~~d~~i~i~d  126 (139)
                      .+                +.|..+|..+++.++.+...++..       ...-+... .+|   +.++.++.+|.+.++|
T Consensus       260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD  339 (599)
T 1w6s_A          260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLD  339 (599)
T ss_dssp             CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEE
T ss_pred             CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEE
Confidence            54                379999999999999986554321       11112222 467   5677788999999999


Q ss_pred             cCCCceeEEEe
Q psy11518        127 LVKGRSAYITN  137 (139)
Q Consensus       127 ~~~~~~~~~~~  137 (139)
                      .++|+.+....
T Consensus       340 ~~tG~~lw~~~  350 (599)
T 1w6s_A          340 RTDGALVSANK  350 (599)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CCCCCEeeccc
Confidence            99999987765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.88  E-value=0.00033  Score=50.10  Aligned_cols=110  Identities=12%  Similarity=0.063  Sum_probs=71.6

Q ss_pred             EecCCc-EEEEeCC---CCeEEEEEccCCce--eeEEEecCCCeEEEEECCCCCEEEEecC-CC--cEEEEEeCCceEEE
Q psy11518         20 VAATSK-LAASSGA---DETVVLYDMVKRKQ--SGALMQHEGTITCLKFTPEGSHLISCSD-DG--SIAIFRVGSWQLEK   90 (139)
Q Consensus        20 ~~~~~~-~l~~~~~---~~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~   90 (139)
                      +.+++. +++....   .+.|..+++.++..  ...+..|...+.  .|+++++.|+.... ++  .|.+||+..+. ..
T Consensus       287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~  363 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VR  363 (693)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EE
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eE
Confidence            344444 4445444   36899999887654  345666665554  88888888775554 44  58888887543 34


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCC----CeEEEEEcCCCcee
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKD----KTLRTWNLVKGRSA  133 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~  133 (139)
                      .+....... +..+.+++++..++....+    +.+..||+.+++..
T Consensus       364 ~l~~p~~~~-~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          364 EVALPGLGS-VSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EECCSSSSE-EEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EeecCCCce-EEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            443344444 7778888888866655443    78999999887643

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.82  E-value=0.0024  Score=44.82  Aligned_cols=115  Identities=11%  Similarity=0.049  Sum_probs=76.1

Q ss_pred             CcEEEEeCC------CCeEEEEEccCCceeeEEEecCCC-------------------------------------e-EE
Q psy11518         24 SKLAASSGA------DETVVLYDMVKRKQSGALMQHEGT-------------------------------------I-TC   59 (139)
Q Consensus        24 ~~~l~~~~~------~~~v~i~~~~~~~~~~~~~~~~~~-------------------------------------v-~~   59 (139)
                      +..+++++.      ++.|..+|..+++.+..+......                                     + ..
T Consensus       160 ~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~  239 (571)
T 2ad6_A          160 KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW  239 (571)
T ss_dssp             TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSC
T ss_pred             CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeee
Confidence            345555554      789999999999998877632110                                     0 12


Q ss_pred             EEECCCCCEEEEecCC----------------CcEEEEEeCCceEEEEEEeCCCC-------cceeEEEEccCCc---EE
Q psy11518         60 LKFTPEGSHLISCSDD----------------GSIAIFRVGSWQLEKLFKKAHKG-------TAVNHISIHPSGK---LA  113 (139)
Q Consensus        60 ~~~~~~~~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~---~l  113 (139)
                      +++.++...+..+..+                +.|..+|..+++.++.+...++.       ....-+...++|+   .+
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v  319 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLL  319 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEE
Confidence            4566655566555432                25999999999999988654221       1122223334674   57


Q ss_pred             EEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        114 LSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       114 ~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +.++.+|.++++|.++++.+....+
T Consensus       320 ~~~~~~G~l~~lD~~tG~~~w~~~~  344 (571)
T 2ad6_A          320 SHIDRNGILYTLNRENGNLIVAEKV  344 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEES
T ss_pred             EEeCCCcEEEEEECCCCCEEeeecc
Confidence            7888899999999999999877653

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.81  E-value=0.0021  Score=45.23  Aligned_cols=63  Identities=6%  Similarity=0.066  Sum_probs=45.4

Q ss_pred             CcEEEEEeCCceEEEEEEeCCCC-------cceeEEEEc-cCCc---EEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKG-------TAVNHISIH-PSGK---LALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~-------~~v~~~~~~-~~~~---~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +.|..+|..+++.++.+...++.       ....-+... .+|+   .++.++.+|.++++|.++|+.+....+
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence            57999999999999998654321       111112222 4663   788899999999999999999877654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.80  E-value=0.003  Score=42.78  Aligned_cols=72  Identities=18%  Similarity=0.252  Sum_probs=51.9

Q ss_pred             CeEEEEECC-CCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcC
Q psy11518         56 TITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLV  128 (139)
Q Consensus        56 ~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~  128 (139)
                      ....++++| ++.++++-..++.|..++...+............. ...++|+|+++ ++++-...+.|..++..
T Consensus       227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~-P~gia~~pdG~~lyv~d~~~~~I~~~~~d  300 (430)
T 3tc9_A          227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW-EFHIQFHPSGNYAYIVVVNQHYILRSDYD  300 (430)
T ss_dssp             SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSC-CEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCc-ceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence            346788999 77777777778899999988766533332222222 78899999999 45555677889998765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.74  E-value=0.0025  Score=39.97  Aligned_cols=114  Identities=10%  Similarity=-0.024  Sum_probs=70.1

Q ss_pred             EEecCCcEE-EEeCC--CCeEEEEEccCCceeeEEE-ecCCCeEEEEECCCCCEE-EEecCCCcEEEEEeCCceEEEEEE
Q psy11518         19 SVAATSKLA-ASSGA--DETVVLYDMVKRKQSGALM-QHEGTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        19 ~~~~~~~~l-~~~~~--~~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      ++.+++..+ ++...  .+.|..+++... ....+. ..-.....+++++++..| ++-...+.|..+|.......... 
T Consensus       128 ~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-  205 (267)
T 1npe_A          128 VTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL-  205 (267)
T ss_dssp             EEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE-
T ss_pred             EEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe-
Confidence            344444444 44333  468888887543 223332 223456889999976655 55556788999998754433333 


Q ss_pred             eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         94 KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      . .... +..++.. ++..+++....+.|..+|..+++.+..+.
T Consensus       206 ~-~~~~-P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          206 E-GLQY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             E-CCCS-EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             c-CCCC-ceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            2 2222 5667764 45555555567899999999998877664

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.68  E-value=0.0036  Score=40.17  Aligned_cols=109  Identities=13%  Similarity=0.092  Sum_probs=70.2

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCC--cEEEEEeCCceEEEEEEeCC
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG--SIAIFRVGSWQLEKLFKKAH   96 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~   96 (139)
                      .+.+++.++++-..++.|..||.... ....+. .......++++++++++++.....  .|..+|..+++.........
T Consensus        38 a~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~  115 (306)
T 2p4o_A           38 ASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD  115 (306)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             EECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCC
Confidence            34447887777778899999997653 332222 334678999999999766554322  46677777777654443222


Q ss_pred             CCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         97 KGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        97 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ... ...++..+++..+++...++.|..+|..++
T Consensus       116 ~~~-~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A          116 AIF-LNGITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             CSC-EEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             ccc-cCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            222 455665666665666656889999998764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=97.61  E-value=0.00044  Score=45.42  Aligned_cols=114  Identities=10%  Similarity=0.012  Sum_probs=74.8

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEec-CCCeEEEEEC--C-CCCEEEEe-cCCCcEEEEEeCCceEEEEEEeCCCC
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQH-EGTITCLKFT--P-EGSHLISC-SDDGSIAIFRVGSWQLEKLFKKAHKG   98 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~-~~~v~~~~~~--~-~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~   98 (139)
                      +..++.++.||.|.-.|.++|+.+..++.. ..++....-.  + ++..++.. ..||.|..++..++.....+..+...
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            457889999999999999999999888754 1222221100  1 22333343 68999999999888666554322110


Q ss_pred             cceeEEEEc-----------cCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         99 TAVNHISIH-----------PSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        99 ~~v~~~~~~-----------~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      . ..-+...           ..+..+++++.++++...|+++|+.+..+..
T Consensus        90 ~-~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 S-TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             T-TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             e-ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence            0 0001111           1456788999999999999999999988753

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.57  E-value=0.0063  Score=40.21  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=75.5

Q ss_pred             EEEEeCCCCeEEEEEcc-------CCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeC-----CceEEEEEE
Q psy11518         26 LAASSGADETVVLYDMV-------KRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG-----SWQLEKLFK   93 (139)
Q Consensus        26 ~l~~~~~~~~v~i~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~-----~~~~~~~~~   93 (139)
                      ++++...+|.+..|++.       +.+.+.++.. .+.+..|...+....|..+-.+.-|..++.+     +++.+..+.
T Consensus       145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS
T ss_pred             EEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec
Confidence            67888888999999983       2345566654 4567888999888889888887656666644     344554442


Q ss_pred             eCCCCcceeEEEE--ccCCc-EEEEEc-CCCeEEEEEcC-CCceeEEEe
Q psy11518         94 KAHKGTAVNHISI--HPSGK-LALSVG-KDKTLRTWNLV-KGRSAYITN  137 (139)
Q Consensus        94 ~~~~~~~v~~~~~--~~~~~-~l~~~~-~d~~i~i~d~~-~~~~~~~~~  137 (139)
                      ..+-...+..|++  .++++ +|++++ .+....+||.+ +.+.+..+.
T Consensus       224 ~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          224 GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            2333323788887  45555 555555 67899999997 667776664

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.54  E-value=0.0061  Score=41.28  Aligned_cols=109  Identities=16%  Similarity=0.196  Sum_probs=66.0

Q ss_pred             EEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC-CC----cEEEEEeCCceEE--E
Q psy11518         19 SVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD-DG----SIAIFRVGSWQLE--K   90 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~----~i~~~d~~~~~~~--~   90 (139)
                      ++.+ ++..|+++...+.|+.+|+..+.... +.........++|+++++.|..+.. ++    .+..++ ..+...  .
T Consensus       143 avdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~~g~~~~~~  220 (430)
T 3tc9_A          143 SFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-RESGFKVIT  220 (430)
T ss_dssp             EEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-GGGTSCSEE
T ss_pred             EECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-CCCceeeee
Confidence            4444 24455555444889999987665433 3334455789999999995555443 22    233333 223221  2


Q ss_pred             EEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         91 LFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      .+..  ... +..++++| ++.++++-..+++|..++...+..
T Consensus       221 ~l~~--~~~-p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~  260 (430)
T 3tc9_A          221 ELTK--GQN-CNGAETHPINGELYFNSWNAGQVFRYDFTTQET  260 (430)
T ss_dssp             EEEE--CSS-CCCEEECTTTCCEEEEETTTTEEEEEETTTTEE
T ss_pred             eecc--CCC-ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcE
Confidence            2211  122 57789999 777777777788999999987654

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.46  E-value=0.008  Score=38.73  Aligned_cols=102  Identities=7%  Similarity=-0.006  Sum_probs=63.3

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEe-----cCCCeEEEEECC-CCCEEEEecC-----------------CCcEEE
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQ-----HEGTITCLKFTP-EGSHLISCSD-----------------DGSIAI   80 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~-~~~~l~~~~~-----------------d~~i~~   80 (139)
                      +..|+++...+.|..+|..++.. ..+..     .......+++.+ +++.+++-..                 ++.|..
T Consensus        91 ~g~l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~  169 (322)
T 2fp8_A           91 NNQLYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIK  169 (322)
T ss_dssp             TTEEEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEE
T ss_pred             CCcEEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEE
Confidence            34444444345588888765432 22211     113467899999 8987776432                 366888


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEE-cCCCeEEEEEcCC
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSV-GKDKTLRTWNLVK  129 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~  129 (139)
                      +|..+++.......  ... ...++++|+++.++.+ ...+.|..|++..
T Consensus       170 ~d~~~~~~~~~~~~--~~~-p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          170 YDPSTKETTLLLKE--LHV-PGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EETTTTEEEEEEEE--ESC-CCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             EeCCCCEEEEeccC--Ccc-CcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            88776664433211  112 5779999999865544 6678999999875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.41  E-value=0.0083  Score=37.85  Aligned_cols=78  Identities=10%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             ecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         52 QHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        52 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      +-...+..++|+|++. ++++...++.|...|.. ++....+....... ...+++.+++.++++.-.++.+.++++...
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D-~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~  101 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKD-LETIEYIGDNQFVISDERDYAIYVISLTPN  101 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSS-EEEEEECSTTEEEEEETTTTEEEEEEECTT
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCC-hHHeEEeCCCEEEEEECCCCcEEEEEcCCC
Confidence            4445789999999765 45567778889999988 78777775544444 788999999987777667788999988765


Q ss_pred             c
Q psy11518        131 R  131 (139)
Q Consensus       131 ~  131 (139)
                      .
T Consensus       102 ~  102 (255)
T 3qqz_A          102 S  102 (255)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=97.28  E-value=0.012  Score=36.80  Aligned_cols=104  Identities=11%  Similarity=0.044  Sum_probs=65.5

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCE-EEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH-LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      +.++++-..++.|..+++..................+++++++.. +++....+.|.+++.......... ..... ...
T Consensus        48 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~-~~~~~-~P~  125 (267)
T 1npe_A           48 KVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLF-DTGLV-NPR  125 (267)
T ss_dssp             TEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCS-SEE
T ss_pred             CEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEE-ECCCC-Ccc
Confidence            445556667889999998765443333222246789999986554 455566778999998654322222 22222 378


Q ss_pred             EEEEccCCcEEEEEc-C--CCeEEEEEcCC
Q psy11518        103 HISIHPSGKLALSVG-K--DKTLRTWNLVK  129 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~-~--d~~i~i~d~~~  129 (139)
                      .++++|++..++.+. .  .+.|..+++..
T Consensus       126 ~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg  155 (267)
T 1npe_A          126 GIVTDPVRGNLYWTDWNRDNPKIETSHMDG  155 (267)
T ss_dssp             EEEEETTTTEEEEEECCSSSCEEEEEETTS
T ss_pred             EEEEeeCCCEEEEEECCCCCcEEEEEecCC
Confidence            999999655544443 3  46888888754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.25  E-value=0.015  Score=37.27  Aligned_cols=76  Identities=13%  Similarity=0.150  Sum_probs=53.5

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC--CeEEEEEcCCCce
Q psy11518         55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD--KTLRTWNLVKGRS  132 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--~~i~i~d~~~~~~  132 (139)
                      .....++|+++++.+++...++.|..||.... ....+...  . .+..+++.++++++++....  ..|..+|..+++.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~--~-~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVE--G-KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECS--S-EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCC--C-CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            45678999999997777778889999987653 33333222  2 38899999999976665432  3577778777765


Q ss_pred             eE
Q psy11518        133 AY  134 (139)
Q Consensus       133 ~~  134 (139)
                      ..
T Consensus       108 ~~  109 (306)
T 2p4o_A          108 ET  109 (306)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.24  E-value=0.016  Score=37.32  Aligned_cols=99  Identities=11%  Similarity=0.111  Sum_probs=61.4

Q ss_pred             CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEe-cCCCcEEEEEeCCce--EEEEEEeCCCCcceeEEEEccC
Q psy11518         33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC-SDDGSIAIFRVGSWQ--LEKLFKKAHKGTAVNHISIHPS  109 (139)
Q Consensus        33 ~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~--~~~~~~~~~~~~~v~~~~~~~~  109 (139)
                      ++.|..+|..+++....... -.....++++|+++.+..+ ...+.|..|++....  ....+..  ... +..+++.++
T Consensus       164 ~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~  239 (322)
T 2fp8_A          164 TGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNAD  239 (322)
T ss_dssp             CEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEEEEECTT
T ss_pred             CceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCCeEECCC
Confidence            36788888766654332222 1234678999999865544 566889999987421  1122211  122 678999999


Q ss_pred             CcEEEEEcC----------CCeEEEEEcCCCceeEEE
Q psy11518        110 GKLALSVGK----------DKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       110 ~~~l~~~~~----------d~~i~i~d~~~~~~~~~~  136 (139)
                      |++.++...          .+.|..+|.. ++.+..+
T Consensus       240 G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~  275 (322)
T 2fp8_A          240 GHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVI  275 (322)
T ss_dssp             SCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEE
T ss_pred             CCEEEEecCcccccccCCCccEEEEECCC-CCEEEEE
Confidence            986666544          4668888863 6655544

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.20  E-value=0.023  Score=38.59  Aligned_cols=106  Identities=11%  Similarity=0.151  Sum_probs=71.0

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEec----CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce-----------
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQH----EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ-----------   87 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-----------   87 (139)
                      ++..++.+- ++.||.-++.....-+.++-.    -..+..+..+|+|++||..+.. .|.+..+..+.           
T Consensus        31 n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~-~V~Vv~LP~~~~~~~~~~~~~~  108 (452)
T 3pbp_A           31 NGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDN-EIFVMEVPWGYSNVEDVSIQDA  108 (452)
T ss_dssp             TTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSS-EEEEEECCTTCSCCCCHHHHHT
T ss_pred             CCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCC-eEEEEEecCccccCcccccccc
Confidence            555555444 377888787654433344322    2257789999999999988654 68888876321           


Q ss_pred             -EEEEEEeCC----CCcceeEEEEcc---CCcEEEEEcCCCeEEEEEcCCC
Q psy11518         88 -LEKLFKKAH----KGTAVNHISIHP---SGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        88 -~~~~~~~~~----~~~~v~~~~~~~---~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                       ....+....    ...+|..+.|||   ++..|++-..|+.|++||+...
T Consensus       109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence             122332221    134599999999   4568999999999999999864

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.20  E-value=0.019  Score=37.60  Aligned_cols=98  Identities=9%  Similarity=0.154  Sum_probs=68.4

Q ss_pred             CCeEEEEEcc---CCceeeEEE--e-----------cCCCeEEEEECCCCCEEEEecCC-CcEEEEEeCCceEEEEE-Ee
Q psy11518         33 DETVVLYDMV---KRKQSGALM--Q-----------HEGTITCLKFTPEGSHLISCSDD-GSIAIFRVGSWQLEKLF-KK   94 (139)
Q Consensus        33 ~~~v~i~~~~---~~~~~~~~~--~-----------~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~~~~~~~~-~~   94 (139)
                      +..|..||+.   +++.+....  .           -......++..++|+..++++.. +.|...+.......... ..
T Consensus        99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~  178 (334)
T 2p9w_A           99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWES  178 (334)
T ss_dssp             CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECC
T ss_pred             CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecC
Confidence            6789999998   777765544  1           11247889999999999988887 77777776543222111 11


Q ss_pred             --CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         95 --AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        95 --~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                        .....-.+.|+++|++..|++....+.|.-+|+++.
T Consensus       179 ~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          179 GNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             CCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred             CCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence              111112679999999998888877999999998743

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.17  E-value=0.017  Score=36.42  Aligned_cols=115  Identities=9%  Similarity=0.069  Sum_probs=76.1

Q ss_pred             cceeeEEEEec--C-CcEEEEeCCCCeEEEEEccCCceeeEEEe-cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         12 SHTASVRSVAA--T-SKLAASSGADETVVLYDMVKRKQSGALMQ-HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        12 ~~~~~v~~~~~--~-~~~l~~~~~~~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      +....+..+++  + +.++++...++.|...|+. ++.+..+.- -......+++.+++.++++.-.++.+.++++....
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNS  102 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCC
Confidence            43345666665  4 4456667788999999987 777776642 22456889999888877776677889999886544


Q ss_pred             E---EEEEEeC-----CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         88 L---EKLFKKA-----HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        88 ~---~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      .   .......     .+.. ...++|+|.++.|+++.+.....+|.+.
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g-~EGLA~d~~~~~L~va~E~~p~~i~~~~  150 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCG-FEGLAYSRQDHTFWFFKEKNPIEVYKVN  150 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSC-CEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred             eeeeeeeeccccccccccCC-cceEEEeCCCCEEEEEECcCCceEEEEc
Confidence            2   2222211     1222 6899999999877777765555555553

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.17  E-value=0.025  Score=38.35  Aligned_cols=73  Identities=12%  Similarity=0.104  Sum_probs=50.0

Q ss_pred             CeEEEEECC-CCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcC
Q psy11518         56 TITCLKFTP-EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLV  128 (139)
Q Consensus        56 ~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~  128 (139)
                      ....++++| ++.++++-..++.|..+|..++.....+...........++|+|+++ ++++-...+.|+.+++.
T Consensus       229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d  303 (433)
T 4hw6_A          229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN  303 (433)
T ss_dssp             SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred             CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence            346788999 67776676678889999988676633321222222245799999998 45555667889998865

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.16  E-value=0.026  Score=38.38  Aligned_cols=107  Identities=10%  Similarity=0.138  Sum_probs=70.9

Q ss_pred             EEEecCCcEEEEeCCCCeEEEEEccCCc------------eeeEEEe------cCCCeEEEEECC---CCCEEEEecCCC
Q psy11518         18 RSVAATSKLAASSGADETVVLYDMVKRK------------QSGALMQ------HEGTITCLKFTP---EGSHLISCSDDG   76 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~v~i~~~~~~~------------~~~~~~~------~~~~v~~~~~~~---~~~~l~~~~~d~   76 (139)
                      ..++++|.+||..+. ..|.|-.+..+.            ....+.-      ...+|..+.|+|   .+..|++-..|+
T Consensus        71 lvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~  149 (452)
T 3pbp_A           71 VISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDD  149 (452)
T ss_dssp             EEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTS
T ss_pred             EEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCC
Confidence            455668999988864 578888876321            1122332      246799999999   467899999999


Q ss_pred             cEEEEEeCCce--EEEEE-------EeCCCCcceeEEEEccCCcEEEEEc--CCCeEEEEE
Q psy11518         77 SIAIFRVGSWQ--LEKLF-------KKAHKGTAVNHISIHPSGKLALSVG--KDKTLRTWN  126 (139)
Q Consensus        77 ~i~~~d~~~~~--~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d  126 (139)
                      .|++||+....  +. .+       ........+.+++|.+++-.|....  ..|.|+-..
T Consensus       150 ~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc  209 (452)
T 3pbp_A          150 TITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY  209 (452)
T ss_dssp             CEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred             EEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence            99999997522  11 22       1111113488999999887666644  777766543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.13  E-value=0.015  Score=38.45  Aligned_cols=100  Identities=14%  Similarity=0.276  Sum_probs=64.1

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCC----CC---EEEEec-C--CCcEEEEEeC--CceEEEE
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE----GS---HLISCS-D--DGSIAIFRVG--SWQLEKL   91 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~-~--d~~i~~~d~~--~~~~~~~   91 (139)
                      ..+++.....+-+.+||+ +++.+..+..  +.++.+...|+    ++   ++++.. .  ++.|.+|++.  ++. +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            345665566778999999 8888887753  56677776663    22   233333 3  5789999873  333 333


Q ss_pred             EEe---C--CCCcceeEEEE--ccC-Cc-EEEEEcCCCeEEEEEc
Q psy11518         92 FKK---A--HKGTAVNHISI--HPS-GK-LALSVGKDKTLRTWNL  127 (139)
Q Consensus        92 ~~~---~--~~~~~v~~~~~--~~~-~~-~l~~~~~d~~i~i~d~  127 (139)
                      +..   +  .....+..+|+  +|. ++ ++++...+|.+..|++
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l  160 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYEL  160 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEE
Confidence            311   1  11133777888  774 43 6778888899999988

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.12  E-value=0.024  Score=37.25  Aligned_cols=111  Identities=12%  Similarity=0.029  Sum_probs=67.4

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEE-EEecCC-CcEEEEEeCCceEEEEEEe
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL-ISCSDD-GSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d-~~i~~~d~~~~~~~~~~~~   94 (139)
                      .++.+ .+.+..+-...+.|.+.+++.......+...-.....++++|.+..+ .+-... +.|..++.......... .
T Consensus       121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~  199 (349)
T 3v64_C          121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-D  199 (349)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC-C
T ss_pred             EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE-E
Confidence            34445 45555666677888888876543333333333456899999855544 444444 67888887643322222 1


Q ss_pred             CCCCcceeEEEEccCCcE-EEEEcCCCeEEEEEcCCC
Q psy11518         95 AHKGTAVNHISIHPSGKL-ALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~  130 (139)
                      . .......++++|++.. +++-...+.|..+|+...
T Consensus       200 ~-~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~  235 (349)
T 3v64_C          200 T-HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS  235 (349)
T ss_dssp             S-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             C-CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            1 2223789999986554 455556788999998654

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.91  E-value=0.038  Score=40.10  Aligned_cols=109  Identities=8%  Similarity=-0.005  Sum_probs=62.3

Q ss_pred             EecCCcEEEEeCCC-----CeEEEEEccCCce--eeEEEe-cCCCeEEEEECCCCCEEEEecC---CCcEEEEEeCCc--
Q psy11518         20 VAATSKLAASSGAD-----ETVVLYDMVKRKQ--SGALMQ-HEGTITCLKFTPEGSHLISCSD---DGSIAIFRVGSW--   86 (139)
Q Consensus        20 ~~~~~~~l~~~~~~-----~~v~i~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~---d~~i~~~d~~~~--   86 (139)
                      +++|++.|+....+     ..|..+++.++..  ...+.. .......+.|+|++++|+....   ...|.++|+.++  
T Consensus       228 WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~  307 (751)
T 2xe4_A          228 WGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA  307 (751)
T ss_dssp             ECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT
T ss_pred             EecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC
Confidence            44488776655543     3677788876642  223332 2234567899999998875442   345888888765  


Q ss_pred             eE-EEEEEeCCCCcceeEEEEccCCcEEEEEcCC----CeEEEEEcCC
Q psy11518         87 QL-EKLFKKAHKGTAVNHISIHPSGKLALSVGKD----KTLRTWNLVK  129 (139)
Q Consensus        87 ~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~i~d~~~  129 (139)
                      .. ...+ ..........+.|+.++.+++....+    ..|..+|+.+
T Consensus       308 ~~~~~~l-~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          308 HNTLEIV-RPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             CCCEEES-SCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CceeEEe-ecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            22 0222 22223335566665555555555443    3677777764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.81  E-value=0.053  Score=36.13  Aligned_cols=110  Identities=13%  Similarity=0.069  Sum_probs=66.2

Q ss_pred             EEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCC-CcEEEEEeCCceEEEEEEeC
Q psy11518         19 SVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDD-GSIAIFRVGSWQLEKLFKKA   95 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d-~~i~~~d~~~~~~~~~~~~~   95 (139)
                      ++.+ .+.+.++-...+.|.+.++........+...-.....++++|.+..|. +-... +.|..++.......... ..
T Consensus       165 avd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~  243 (386)
T 3v65_B          165 AVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA-DT  243 (386)
T ss_dssp             EEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CS
T ss_pred             EEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEE-EC
Confidence            4444 455556666677788877754433333333334568899998665554 44344 67888887644333322 22


Q ss_pred             CCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCC
Q psy11518         96 HKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~  130 (139)
                      .... ...++++|++. ++++-...+.|..+|+...
T Consensus       244 ~~~~-PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~  278 (386)
T 3v65_B          244 HLFW-PNGLTIDYAGRRMYWVDAKHHVIERANLDGS  278 (386)
T ss_dssp             SCSC-EEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred             CCCC-eeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence            2222 78999997555 4455566788999998644

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.78  E-value=0.051  Score=35.64  Aligned_cols=111  Identities=6%  Similarity=0.002  Sum_probs=73.1

Q ss_pred             EEEec---CCcEEEEeCCCCeEEEEEccCCceeeE-EEe----cC--CCeEEEEE---CCCCCEEEEec-----------
Q psy11518         18 RSVAA---TSKLAASSGADETVVLYDMVKRKQSGA-LMQ----HE--GTITCLKF---TPEGSHLISCS-----------   73 (139)
Q Consensus        18 ~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~-~~~----~~--~~v~~~~~---~~~~~~l~~~~-----------   73 (139)
                      -+..|   ++.++++.-..+.|..|++..+..... +..    ..  ..+..+.|   .|+++++++..           
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            34555   355666666899999999875543322 211    01  13578999   68877777543           


Q ss_pred             --CCCcEEEEEeC---CceEEEEEEeCC-----------CCcceeEEEEccCCcEEEEEcCC-CeEEEEEcC
Q psy11518         74 --DDGSIAIFRVG---SWQLEKLFKKAH-----------KGTAVNHISIHPSGKLALSVGKD-KTLRTWNLV  128 (139)
Q Consensus        74 --~d~~i~~~d~~---~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d~~  128 (139)
                        .+..+..+|+.   +++.........           .......++..++|+..++++.. +.|..++..
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd  167 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD  167 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC
Confidence              25679999998   777666553221           11237899999999999988777 666666554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=96.71  E-value=0.014  Score=41.59  Aligned_cols=96  Identities=13%  Similarity=0.045  Sum_probs=58.2

Q ss_pred             CCcEEEEeCCCC-----------eEEEEEccCCceeeEE--EecCCC-eEEEEECCCCCEEEEecCC-----------Cc
Q psy11518         23 TSKLAASSGADE-----------TVVLYDMVKRKQSGAL--MQHEGT-ITCLKFTPEGSHLISCSDD-----------GS   77 (139)
Q Consensus        23 ~~~~l~~~~~~~-----------~v~i~~~~~~~~~~~~--~~~~~~-v~~~~~~~~~~~l~~~~~d-----------~~   77 (139)
                      ++++++.|+.++           .+.+||+.+..-....  ...... -.+....|+++.++.|+.+           ..
T Consensus       410 ~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~  489 (656)
T 1k3i_A          410 KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFT  489 (656)
T ss_dssp             TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCC
T ss_pred             CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccc
Confidence            788888888542           6778887765432221  111222 2344567899999988754           45


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcC
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGK  118 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  118 (139)
                      +.+||..+.+....-.............+.|+++.++.|+.
T Consensus       490 v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          490 PEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            89999887664432211111111234556789999999985

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=96.67  E-value=0.06  Score=34.94  Aligned_cols=110  Identities=9%  Similarity=-0.005  Sum_probs=66.6

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec--CCCcEEEEEeCCceEEEEEEe
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS--DDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      .++.+ .+.+..+-...+.|.+++++.................++++|.+..|....  ..+.|...+.......... .
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~  162 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-N  162 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-C
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-E
Confidence            34444 455556666778888888765433222323334568899998655554443  3567888877543322222 2


Q ss_pred             CCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCC
Q psy11518         95 AHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~  129 (139)
                      ..-. ....+++++++. ++++-+..+.|..+|+..
T Consensus       163 ~~l~-~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG  197 (318)
T 3sov_A          163 SEIY-WPNGLTLDYEEQKLYWADAKLNFIHKSNLDG  197 (318)
T ss_dssp             SSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCCC-CccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence            2222 278999998655 445556678899999864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.66  E-value=0.06  Score=34.77  Aligned_cols=111  Identities=11%  Similarity=-0.018  Sum_probs=68.0

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCC-CcEEEEEeCCceEEEEEEe
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDD-GSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d-~~i~~~d~~~~~~~~~~~~   94 (139)
                      .++.+ .+.+.++-...+.|.+.++..................++++|.+..+. +.... +.|...+.... ....+..
T Consensus        82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~  160 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVT  160 (316)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEEC
T ss_pred             EEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEE
Confidence            34444 455556667788899999765433333333335668999998655544 43333 67888887543 3333312


Q ss_pred             CCCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcCCC
Q psy11518         95 AHKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~  130 (139)
                      ..-. ....+++++++..| ++-...+.|..+|+...
T Consensus       161 ~~~~-~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~  196 (316)
T 1ijq_A          161 ENIQ-WPNGITLDLLSGRLYWVDSKLHSISSIDVNGG  196 (316)
T ss_dssp             SSCS-CEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCC-CceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence            2222 37899999876555 45556788999998643

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.63  E-value=0.01  Score=42.75  Aligned_cols=106  Identities=11%  Similarity=0.035  Sum_probs=61.8

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec-CC-CcEEEEEeCCceEEEEEEeCCCCcc
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS-DD-GSIAIFRVGSWQLEKLFKKAHKGTA  100 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~~~~~~~  100 (139)
                      .+.++++-...+.|.++++........+.........++++|.+..|+... .. +.|..+++..... ..+... ....
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~~l~~~-~l~~  541 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTE-NIQW  541 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-CEESCS-SCSS
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-eEEEeC-CCCC
Confidence            345555556678898888765433322222223456788888655444333 33 6787777653322 222111 1222


Q ss_pred             eeEEEEccCCc-EEEEEcCCCeEEEEEcCCC
Q psy11518        101 VNHISIHPSGK-LALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus       101 v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~  130 (139)
                      ...|+|+|++. ++++-...+.|..+++...
T Consensus       542 PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~  572 (699)
T 1n7d_A          542 PNGITLDLLSGRLYWVDSKLHSISSIDVNGG  572 (699)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred             ccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence            67899998655 5555567788999998643

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=96.58  E-value=0.081  Score=35.25  Aligned_cols=115  Identities=10%  Similarity=-0.012  Sum_probs=69.0

Q ss_pred             EEec-CCcEEEEeCCC-CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEE-EEecCCCcEEEEEeCCceEEEEEEeC
Q psy11518         19 SVAA-TSKLAASSGAD-ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSWQLEKLFKKA   95 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~-~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~   95 (139)
                      .+.+ .+.++.+-... +.|..+++............-.....++++|++..| .+-...+.|..+|.........+ ..
T Consensus       208 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~  286 (386)
T 3v65_B          208 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVI-SQ  286 (386)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEE-CS
T ss_pred             EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEE-EC
Confidence            3444 34444444444 678777765433222222223346899999865555 45556778999997654333333 22


Q ss_pred             CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         96 HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .... +..+++ ..+..+++....+.|..+|..+++.+..+
T Consensus       287 ~~~~-P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i  325 (386)
T 3v65_B          287 GLPH-PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEII  325 (386)
T ss_dssp             SCSS-EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             CCCC-ceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEE
Confidence            2233 678888 45667777777889999997777655544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.50  E-value=0.15  Score=37.44  Aligned_cols=113  Identities=12%  Similarity=0.034  Sum_probs=70.0

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec-CC-CcEEEEEeCCceEEEEEEe
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS-DD-GSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-~~i~~~d~~~~~~~~~~~~   94 (139)
                      +++.| .++++++-...+.|.+.++........+...-.....|+++|....|.... .. +.|...++........+ .
T Consensus       476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv-~  554 (791)
T 3m0c_C          476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-T  554 (791)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-C
T ss_pred             eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE-e
Confidence            44555 345666667788899999865443333333445578999998755554433 33 67888887654443333 2


Q ss_pred             CCCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcCCCce
Q psy11518         95 AHKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~  132 (139)
                      ..... +..|++++.+..| ++-...+.|..+++.....
T Consensus       555 ~~l~~-P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~  592 (791)
T 3m0c_C          555 ENIQW-PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR  592 (791)
T ss_dssp             SSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCCC-ceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence            22223 7899999765554 4445667899998865433

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=96.33  E-value=0.1  Score=33.68  Aligned_cols=116  Identities=9%  Similarity=-0.009  Sum_probs=68.7

Q ss_pred             EEec-CCcEEEEeCCC-CeEEEEEccCCceeeEE-EecCCCeEEEEECCCCCEEE-EecCCCcEEEEEeCCceEEEEEEe
Q psy11518         19 SVAA-TSKLAASSGAD-ETVVLYDMVKRKQSGAL-MQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~-~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      .+.+ .+.++.+.... +.|...++... ....+ ...-.....+++++++..|. +-...+.|..+|............
T Consensus       126 avdp~~g~ly~~d~~~~~~I~~~~~dG~-~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~  204 (316)
T 1ijq_A          126 VVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED  204 (316)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred             EeCCCCCEEEEEccCCCCeEEEEcCCCC-CeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec
Confidence            3444 34444444333 67877776433 33332 22234568999998766554 555667899999875333222221


Q ss_pred             CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         95 AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ......+..+++. .+..+++....+.|..+|..+++.+..+
T Consensus       205 ~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          205 EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  245 (316)
T ss_dssp             TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEE
Confidence            1111226778885 4667777777889999998877655443

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=96.30  E-value=0.12  Score=33.97  Aligned_cols=106  Identities=8%  Similarity=-0.026  Sum_probs=65.2

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCC-CCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE-GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                      ++.++.+-...+.|..+++..................+++++. +++..+-...+.|.+.+.......... ..... .+
T Consensus        84 ~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~~~l~-~P  161 (349)
T 3v64_C           84 RELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLE-KP  161 (349)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CTTCS-CE
T ss_pred             ccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-eCCCC-Cc
Confidence            3445556567788888887665433333322234568888874 445556666778999998654333222 22223 37


Q ss_pred             eEEEEccCCc-EEEEEcCC-CeEEEEEcCCC
Q psy11518        102 NHISIHPSGK-LALSVGKD-KTLRTWNLVKG  130 (139)
Q Consensus       102 ~~~~~~~~~~-~l~~~~~d-~~i~i~d~~~~  130 (139)
                      ..++++|.+. ++++-... +.|..+++...
T Consensus       162 ~~iavdp~~g~ly~td~~~~~~I~r~~~dG~  192 (349)
T 3v64_C          162 RAIALHPMEGTIYWTDWGNTPRIEASSMDGS  192 (349)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             ceEEEecCcCeEEEeccCCCCEEEEEeCCCC
Confidence            8999998555 45555555 78888887643

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.26  E-value=0.16  Score=35.22  Aligned_cols=71  Identities=18%  Similarity=0.198  Sum_probs=47.7

Q ss_pred             eEEEEECC-CCCEEEEecCCCcEEEEEeC-------CceE-----------E-EEEEeCCCCcceeEEEEccCCcE-EEE
Q psy11518         57 ITCLKFTP-EGSHLISCSDDGSIAIFRVG-------SWQL-----------E-KLFKKAHKGTAVNHISIHPSGKL-ALS  115 (139)
Q Consensus        57 v~~~~~~~-~~~~l~~~~~d~~i~~~d~~-------~~~~-----------~-~~~~~~~~~~~v~~~~~~~~~~~-l~~  115 (139)
                      ...++.+| ++.++++-..++.|..+|+.       ++..           . ..+...... ....++|+|+++. +++
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~-~p~~ia~~p~G~~lYva  327 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPS-WEFQIFIHPTGKYAYFG  327 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSS-CCEEEEECTTSSEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCC-CceEEEEcCCCCEEEEE
Confidence            35778899 55666677778889999987       4443           1 222222222 2688999999995 555


Q ss_pred             EcCCCeEEEEEcC
Q psy11518        116 VGKDKTLRTWNLV  128 (139)
Q Consensus       116 ~~~d~~i~i~d~~  128 (139)
                      -....+|+.++..
T Consensus       328 D~~~h~I~kid~d  340 (496)
T 3kya_A          328 VINNHYFMRSDYD  340 (496)
T ss_dssp             ETTTTEEEEEEEE
T ss_pred             eCCCCEEEEEecC
Confidence            5677889986653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.22  E-value=0.15  Score=34.57  Aligned_cols=111  Identities=13%  Similarity=0.097  Sum_probs=69.3

Q ss_pred             EEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEe--cCCCeEEEEECCCCCEE-EEecCCCcEEEEEeCC--ceE---E
Q psy11518         19 SVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQ--HEGTITCLKFTPEGSHL-ISCSDDGSIAIFRVGS--WQL---E   89 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~--~~~---~   89 (139)
                      ++.+ ++.+.++-..++.|..++..++.....+..  ....-..++|+|+++.| ++-...+.|..++...  +..   .
T Consensus       234 avd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~  313 (433)
T 4hw6_A          234 AVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPY  313 (433)
T ss_dssp             EECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCE
T ss_pred             EEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEE
Confidence            3455 566666777788999999887765223221  11223469999999855 4555677899988652  221   1


Q ss_pred             EEEEe-CC-----------CCcceeEEEE---------ccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         90 KLFKK-AH-----------KGTAVNHISI---------HPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        90 ~~~~~-~~-----------~~~~v~~~~~---------~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ..... ..           .-..+..+++         .+++.++++-...++|+.++. ++
T Consensus       314 ~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G  374 (433)
T 4hw6_A          314 IVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG  374 (433)
T ss_dssp             EEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred             EEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence            11111 00           0112677999         778888888788889999985 44

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.15  E-value=0.025  Score=40.81  Aligned_cols=101  Identities=8%  Similarity=-0.019  Sum_probs=57.4

Q ss_pred             CeEEEEEccCCceeeEE-EecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc
Q psy11518         34 ETVVLYDMVKRKQSGAL-MQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK  111 (139)
Q Consensus        34 ~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  111 (139)
                      +.|..+++... ....+ ...-.....|+++|++. ++++-...+.|..+++........+...........+++..+ .
T Consensus       519 ~~I~~~~~dG~-~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~  596 (699)
T 1n7d_A          519 AKIKKGGLNGV-DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-K  596 (699)
T ss_dssp             CCEEBCCSSSC-CCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-E
T ss_pred             CeEEEEeCCCC-CeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-E
Confidence            55666555332 22222 11123346899998654 445556677899999865433333211111112455666543 5


Q ss_pred             EEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518        112 LALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       112 ~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ++++....+.|..+|..+++.+..+
T Consensus       597 lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          597 VFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EEEECSTTTCEEEEETTTEEEEECC
T ss_pred             EEEEeCCCCeEEEEEccCCCceEEe
Confidence            5666667789999998888766554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=96.07  E-value=0.26  Score=35.90  Aligned_cols=114  Identities=7%  Similarity=0.033  Sum_probs=71.2

Q ss_pred             eeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE----ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         15 ASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM----QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ..|.++..  ++..|..|+.++-|..+|..+++...-..    .....|.++...+++++++... +| |..||..+++.
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~  483 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSF  483 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEE
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeE
Confidence            35666665  56635566666668999987765332211    1245688999888888766554 44 88899877655


Q ss_pred             EEEEEe----CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         89 EKLFKK----AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        89 ~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      ......    ......|.++...+++.+.+... . -+..||..+++.
T Consensus       484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~  529 (795)
T 4a2l_A          484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI  529 (795)
T ss_dssp             EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE
T ss_pred             EEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE
Confidence            433211    11123488898888887555443 4 477888766543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=96.03  E-value=0.18  Score=33.76  Aligned_cols=112  Identities=12%  Similarity=0.028  Sum_probs=70.8

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec-C-CCcEEEEEeCCceEEEEEEe
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS-D-DGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-d~~i~~~d~~~~~~~~~~~~   94 (139)
                      .++.+ .+.+..+-...+.|.+.+++.......+...-.....++++|.+..|.... . .+.|...++......... .
T Consensus       164 lavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~-~  242 (400)
T 3p5b_L          164 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-T  242 (400)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEE-C
T ss_pred             EEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEE-E
Confidence            34555 566666667788899888865544444443344578999998655554333 3 467888887654333332 2


Q ss_pred             CCCCcceeEEEEccCCcEEEE-EcCCCeEEEEEcCCCc
Q psy11518         95 AHKGTAVNHISIHPSGKLALS-VGKDKTLRTWNLVKGR  131 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~  131 (139)
                      ..-.. +..+++++++..|+. -...+.|..+|+....
T Consensus       243 ~~l~~-P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~  279 (400)
T 3p5b_L          243 ENIQW-PNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  279 (400)
T ss_dssp             SSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred             CCCCc-eEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence            22223 789999986665554 4567889999986543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.77  E-value=0.19  Score=31.86  Aligned_cols=109  Identities=12%  Similarity=0.131  Sum_probs=61.7

Q ss_pred             cCCcEEEEeCCC-----CeEEEEEccCCceee--EEEecCCCeEEEEECCCCCEEEEecCC-----CcEEEEEeCCceEE
Q psy11518         22 ATSKLAASSGAD-----ETVVLYDMVKRKQSG--ALMQHEGTITCLKFTPEGSHLISCSDD-----GSIAIFRVGSWQLE   89 (139)
Q Consensus        22 ~~~~~l~~~~~~-----~~v~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~   89 (139)
                      .++.+++.|+.+     ..+.+||+.+.+=..  .+.........+.+  +++.++.|+.+     ..+.+||+.+.+..
T Consensus       158 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  235 (301)
T 2vpj_A          158 ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT  235 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEE
Confidence            377788887754     458888987653211  11111112233333  56677777654     45889999877654


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCceeE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGRSAY  134 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~  134 (139)
                      ..-..+........+.  -++++++.|+.+     ..+.+||+++.+...
T Consensus       236 ~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  283 (301)
T 2vpj_A          236 TVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWEV  283 (301)
T ss_dssp             EECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEEE
T ss_pred             ECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEEE
Confidence            4321121111112222  367788888765     468899998876543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=95.61  E-value=0.29  Score=32.81  Aligned_cols=117  Identities=8%  Similarity=-0.015  Sum_probs=67.9

Q ss_pred             EEec-CCcEEEEeCC-CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEe-cCCCcEEEEEeCCceEEEEEEeC
Q psy11518         19 SVAA-TSKLAASSGA-DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC-SDDGSIAIFRVGSWQLEKLFKKA   95 (139)
Q Consensus        19 ~~~~-~~~~l~~~~~-~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~   95 (139)
                      .+.+ .+.++.+-.. .+.|...++............-.....+++++++..|..+ ...+.|..+|+............
T Consensus       208 avdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~  287 (400)
T 3p5b_L          208 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE  287 (400)
T ss_dssp             EEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECS
T ss_pred             EEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCC
Confidence            3444 3333343322 3677777765433322223333456899999876666544 55678999998654433333221


Q ss_pred             CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         96 HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ........++.. .+.++++....+.|..+|..+++.+..+
T Consensus       288 ~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i  327 (400)
T 3p5b_L          288 KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  327 (400)
T ss_dssp             STTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEE
T ss_pred             CCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEE
Confidence            111225677773 4566677777888999998777665544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.60  E-value=0.16  Score=35.94  Aligned_cols=73  Identities=12%  Similarity=0.200  Sum_probs=52.1

Q ss_pred             CeEEEEECCCCCEEEEecC-CCcEEEEEeCCce------E-----EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEE
Q psy11518         56 TITCLKFTPEGSHLISCSD-DGSIAIFRVGSWQ------L-----EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLR  123 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~------~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  123 (139)
                      ....+..+|+|++++.++. +.++.++|.....      .     ...- ....+-.....+|.++|.-..+-.-|.+|.
T Consensus       324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a-e~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG-EPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE-CCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe-eccCCCcccEEEECCCCceEeeeeecceEE
Confidence            3467889999999876655 8889999987421      1     0011 112233378899999997777778899999


Q ss_pred             EEEcCC
Q psy11518        124 TWNLVK  129 (139)
Q Consensus       124 i~d~~~  129 (139)
                      -|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999875

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=95.60  E-value=0.34  Score=33.64  Aligned_cols=108  Identities=19%  Similarity=0.280  Sum_probs=63.9

Q ss_pred             EEEec-C-CcEEEEeCCCCeEEEEEccCCceeeEEEec---CCCeEEEEE-------CCCCCEEEEecCCC-c------E
Q psy11518         18 RSVAA-T-SKLAASSGADETVVLYDMVKRKQSGALMQH---EGTITCLKF-------TPEGSHLISCSDDG-S------I   78 (139)
Q Consensus        18 ~~~~~-~-~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~---~~~v~~~~~-------~~~~~~l~~~~~d~-~------i   78 (139)
                      +++.+ + ++++++....+.|++.|++.+........-   ......++|       ++++..|+.+...+ .      +
T Consensus       144 la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V  223 (496)
T 3kya_A          144 LAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSV  223 (496)
T ss_dssp             EEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEE
T ss_pred             EEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceE
Confidence            44454 2 344555455577888888776554433321   124789999       99998666555443 2      5


Q ss_pred             EEEEeCC-ceEE-----EEEEeCCCCcceeEEEEcc-CCcEEEEEcCCCeEEEEEcC
Q psy11518         79 AIFRVGS-WQLE-----KLFKKAHKGTAVNHISIHP-SGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        79 ~~~d~~~-~~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~  128 (139)
                      .+++... +...     ..+..  ... ...++.+| ++.++++-..++.|..+|+.
T Consensus       224 ~~i~r~~~G~~~~~~~~~~v~~--~~~-p~giavdp~~g~LYvtd~~~g~V~r~d~~  277 (496)
T 3kya_A          224 YIIKRNADGTFDDRSDIQLIAA--YKQ-CNGATIHPINGELYFNSYEKGQVFRLDLV  277 (496)
T ss_dssp             EEEECCTTSCCSTTSCEEEEEE--ESC-CCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred             EEEecCCCCceeecccceeecc--CCC-ceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence            5665333 1221     12211  112 56788999 45556666788899999997

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.51  E-value=0.61  Score=35.92  Aligned_cols=98  Identities=12%  Similarity=0.076  Sum_probs=59.3

Q ss_pred             EEEEEccCCceeeEEEe-cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccC-----
Q psy11518         36 VVLYDMVKRKQSGALMQ-HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS-----  109 (139)
Q Consensus        36 v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~-----  109 (139)
                      |++.+......+..... ....|...+.+.  .+++.+. .+.+.++.+..++..... ...-...|.|+++.|.     
T Consensus       494 Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~-~~~l~~evscl~i~~~~~~~~  569 (1158)
T 3ei3_A          494 VRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQIS-HTEMEHEVACLDITPLGDSNG  569 (1158)
T ss_dssp             EEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEE-EEECSSCEEEEECCCCSSSTT
T ss_pred             EEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeec-ccCCCCceEEEEeecCCCCcc
Confidence            44555443334433332 123455555543  4555554 567888888766543322 2222334999999863     


Q ss_pred             -CcEEEEEcC-CCeEEEEEcCCCceeEEEe
Q psy11518        110 -GKLALSVGK-DKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       110 -~~~l~~~~~-d~~i~i~d~~~~~~~~~~~  137 (139)
                       ++++++|.. |+.++|+++.+.+.+....
T Consensus       570 ~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~  599 (1158)
T 3ei3_A          570 LSPLCAIGLWTDISARILKLPSFELLHKEM  599 (1158)
T ss_dssp             CCSEEEEEETTTTEEEEEETTTCCEEEEEE
T ss_pred             cccEEEEEECCCCEEEEEECCCCCeEEEEE
Confidence             368899986 9999999998876665443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.40  E-value=0.67  Score=35.70  Aligned_cols=112  Identities=17%  Similarity=0.150  Sum_probs=67.6

Q ss_pred             ceeeEEEEec-CCcEEEEeCCCCeEEEEEccCCceee-EEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE--eCCceE
Q psy11518         13 HTASVRSVAA-TSKLAASSGADETVVLYDMVKRKQSG-ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR--VGSWQL   88 (139)
Q Consensus        13 ~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~   88 (139)
                      ..+++.+++. +|.++++.  +..|++|++...+.+. ....+. .+..+.....+++++.|+.-..+.++.  ...++.
T Consensus       884 v~g~v~al~~~~g~Lla~i--g~~l~vy~l~~~~~L~~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L  960 (1158)
T 3ei3_A          884 VKGAVYSMVEFNGKLLASI--NSTVRLYEWTTEKELRTECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF  960 (1158)
T ss_dssp             ESSCEEEEEEETTEEEEEE--TTEEEEEEECTTSCEEEEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEE
T ss_pred             cCCcCEEEeeeCCEEEEEc--CCEEEEEECCCCceEEEEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeE
Confidence            3567888875 77655544  3789999997665443 111121 222222223567888888776676654  444444


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      .... .......++++.+-.+ ..++.+..+|.+.++....
T Consensus       961 ~~~a-~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          961 EEIA-RDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEE-ECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECT
T ss_pred             EEEE-eecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCC
Confidence            4444 3333333788887644 4677788899999887654

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=95.37  E-value=0.53  Score=34.34  Aligned_cols=113  Identities=16%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             eEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE--------ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         16 SVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM--------QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      .|.++..  ++. |-.|+.++-|..|+..+++...-..        .....|.++...++++.+..|..++-|..+|..+
T Consensus       358 ~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          358 VVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNS  436 (795)
T ss_dssp             SEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTT
T ss_pred             eeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCC
Confidence            4667765  444 4446666668889887664332211        1135688888888888344555555699999887


Q ss_pred             ceEEEEEEeC---CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         86 WQLEKLFKKA---HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        86 ~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      ++..... ..   .....|.++...+++.+.+.. .+ -+..||..+++.
T Consensus       437 ~~~~~~~-~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~  483 (795)
T 4a2l_A          437 GQVENFN-QRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSF  483 (795)
T ss_dssp             CCEEEEC-TTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEE
T ss_pred             CcEEEee-cCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeE
Confidence            7644332 11   112348889888888755544 34 488888876543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=95.03  E-value=0.68  Score=33.70  Aligned_cols=112  Identities=16%  Similarity=0.159  Sum_probs=67.9

Q ss_pred             eeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEec-----CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         15 ASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQH-----EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ..|.++..  ++. +..|+. +-|..+|..+++........     ...|.++...+++++.+.....| |..+|..+.+
T Consensus       450 ~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~  526 (781)
T 3v9f_A          450 LDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQL  526 (781)
T ss_dssp             CCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCE
T ss_pred             CeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCe
Confidence            45666665  344 444444 45888898776543322211     35688999998888776554455 7778876654


Q ss_pred             EEEEEEeCC--CCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         88 LEKLFKKAH--KGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        88 ~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ... +....  ....|.++...++|.+.+.. .+|.+..||..+++
T Consensus       527 ~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~  570 (781)
T 3v9f_A          527 VRK-FNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFD  570 (781)
T ss_dssp             EEE-ECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCC
T ss_pred             EEE-ccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCc
Confidence            433 31111  12338888888888755544 46655788877654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.93  E-value=0.73  Score=33.54  Aligned_cols=114  Identities=12%  Similarity=0.057  Sum_probs=66.8

Q ss_pred             eeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEE---EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         15 ASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGAL---MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ..|.++..  ++. |-.|+.++-|..|+..++....-.   ......|.++...+++.+.+ |..++-|..+|..+++..
T Consensus       363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred             cceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence            34667665  344 445554455888887654322111   12335688888888887666 444445888887766543


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      ...........|.++...+++.+.+ |+. +-|..||..+++.
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~  481 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKV  481 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSC
T ss_pred             EeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeE
Confidence            3221011223488888888777444 444 4588888877554

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.79  E-value=0.43  Score=30.25  Aligned_cols=108  Identities=13%  Similarity=0.113  Sum_probs=60.4

Q ss_pred             cCCcEEEEeCCC-------CeEEEEEccCCce--eeEEEecCCCeEEEEECCCCCEEEEecCC-----CcEEEEEeCCce
Q psy11518         22 ATSKLAASSGAD-------ETVVLYDMVKRKQ--SGALMQHEGTITCLKFTPEGSHLISCSDD-----GSIAIFRVGSWQ   87 (139)
Q Consensus        22 ~~~~~l~~~~~~-------~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~   87 (139)
                      .++.+++.|+.+       ..+.+||+.+.+=  +..+.........+.+  +++.++.|+.+     ..+.+||..+.+
T Consensus       154 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  231 (302)
T 2xn4_A          154 VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA  231 (302)
T ss_dssp             ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred             ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence            377777777642       3578888876532  1111111122233333  56677777654     368899988776


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCcee
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGRSA  133 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~  133 (139)
                      ....-....... -..++ ..++++++.|+.+     ..+.+||+.+.+..
T Consensus       232 W~~~~~~~~~r~-~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          232 WRQVADMNMCRR-NAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             EEEECCCSSCCB-SCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             EeeCCCCCCccc-cCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            544321121111 11122 2367888888765     34899999887654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=94.78  E-value=0.48  Score=30.72  Aligned_cols=101  Identities=9%  Similarity=-0.079  Sum_probs=61.9

Q ss_pred             CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc
Q psy11518         33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK  111 (139)
Q Consensus        33 ~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  111 (139)
                      .+.|...++............-.....+++++++..|. +-...+.|..+|.......... ...... +..+++. .+.
T Consensus       144 ~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~-~~~~~~-P~glav~-~~~  220 (318)
T 3sov_A          144 VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV-KGSLPH-PFALTLF-EDI  220 (318)
T ss_dssp             SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CSCCSC-EEEEEEE-TTE
T ss_pred             CCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe-cCCCCC-ceEEEEe-CCE
Confidence            56777777653322222222223458999998655554 5556778999998643332222 222233 6778875 446


Q ss_pred             EEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518        112 LALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       112 ~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .+++-...+.|..+|..+++....+
T Consensus       221 lywtd~~~~~V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          221 LYWTDWSTHSILACNKYTGEGLREI  245 (318)
T ss_dssp             EEEEETTTTEEEEEETTTCCSCEEE
T ss_pred             EEEEecCCCeEEEEECCCCCceEEE
Confidence            6667777889999999887765443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.65  E-value=0.48  Score=30.11  Aligned_cols=109  Identities=8%  Similarity=0.111  Sum_probs=60.8

Q ss_pred             cCCcEEEEeCC---------CCeEEEEEccCCce--eeEEEecCCCeEEEEECCCCCEEEEecCC-----CcEEEEEeCC
Q psy11518         22 ATSKLAASSGA---------DETVVLYDMVKRKQ--SGALMQHEGTITCLKFTPEGSHLISCSDD-----GSIAIFRVGS   85 (139)
Q Consensus        22 ~~~~~l~~~~~---------~~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~   85 (139)
                      .++.+++.|+.         -..+.+||+.+.+=  +..+.........+.+  +++.++.|+.+     ..+.+||+.+
T Consensus       148 ~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~  225 (306)
T 3ii7_A          148 ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKL  225 (306)
T ss_dssp             ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTT
T ss_pred             ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCC
Confidence            47777777763         34588899877631  1111111122223333  56667777653     3588899887


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCceeE
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGRSAY  134 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~  134 (139)
                      .+....-..+........+.+  ++++++.|+.+     ..+.+||+.+.+...
T Consensus       226 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~  277 (306)
T 3ii7_A          226 NEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWVA  277 (306)
T ss_dssp             TEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEEE
T ss_pred             CcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEEe
Confidence            654433211211111222222  67888888853     568999998876543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=94.64  E-value=0.49  Score=30.24  Aligned_cols=109  Identities=10%  Similarity=0.117  Sum_probs=60.2

Q ss_pred             cCCcEEEEeCC------CCeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCC-----cEEEEEeCCceE
Q psy11518         22 ATSKLAASSGA------DETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDG-----SIAIFRVGSWQL   88 (139)
Q Consensus        22 ~~~~~l~~~~~------~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~~d~~~~~~   88 (139)
                      .++++++.|+.      -..+.+||+.+.+  .+..+........++.+  +++.++.|+.++     .+..||..+.+.
T Consensus       147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKW  224 (315)
T ss_dssp             ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred             ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence            47777788875      2468888887652  11111111122233333  566777776554     478889887755


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCC--------------CeEEEEEcCCCceeE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKD--------------KTLRTWNLVKGRSAY  134 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------~~i~i~d~~~~~~~~  134 (139)
                      ...-..+........+.  -++++++.|+.+              ..+.+||+++.+...
T Consensus       225 ~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          225 APFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEE
T ss_pred             EECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhh
Confidence            44322122211112222  267778877753              247889998876543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=94.64  E-value=0.48  Score=30.05  Aligned_cols=109  Identities=11%  Similarity=0.100  Sum_probs=59.4

Q ss_pred             cCCcEEEEeCCCC-----eEEEEEccCCcee--eEEEecCCCeEEEEECCCCCEEEEecCC-------CcEEEEEeCCce
Q psy11518         22 ATSKLAASSGADE-----TVVLYDMVKRKQS--GALMQHEGTITCLKFTPEGSHLISCSDD-------GSIAIFRVGSWQ   87 (139)
Q Consensus        22 ~~~~~l~~~~~~~-----~v~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~~d~~~~~   87 (139)
                      .++.+++.|+.++     .+.+||+.+.+=.  ..+........++.+  +++.++.|+.+       ..+..||+.+..
T Consensus       107 ~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~  184 (302)
T 2xn4_A          107 LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE  184 (302)
T ss_dssp             ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE
T ss_pred             ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc
Confidence            4777777777543     5778887665321  111111122223333  55666666542       348889988776


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCceeE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGRSAY  134 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~  134 (139)
                      ....-..+........+.  -++++++.|+.+     ..+.+||+.+.+...
T Consensus       185 W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  234 (302)
T 2xn4_A          185 WTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ  234 (302)
T ss_dssp             EEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred             EEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence            544321122111112222  267788888754     468999998876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.58  E-value=0.5  Score=30.01  Aligned_cols=108  Identities=8%  Similarity=0.055  Sum_probs=60.9

Q ss_pred             cCCcEEEEeCCC----CeEEEEEccCCceee--EEEecCCCeEEEEECCCCCEEEEecCC------CcEEEEEeCCceEE
Q psy11518         22 ATSKLAASSGAD----ETVVLYDMVKRKQSG--ALMQHEGTITCLKFTPEGSHLISCSDD------GSIAIFRVGSWQLE   89 (139)
Q Consensus        22 ~~~~~l~~~~~~----~~v~i~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~~d~~~~~~~   89 (139)
                      .++.+++.|+.+    ..+.+||+.+.+-..  .+.........+.+  +++.++.|+.+      ..+.+||..+....
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~  131 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH  131 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence            477788888754    678889987763221  11111122233333  56677777654      45889998877654


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcC---------CCeEEEEEcCCCcee
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGK---------DKTLRTWNLVKGRSA  133 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~  133 (139)
                      ..-..+.... -.+++ .-++++++.|+.         -..+.+||+.+.+..
T Consensus       132 ~~~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~  182 (306)
T 3ii7_A          132 TKPSMLTQRC-SHGMV-EANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT  182 (306)
T ss_dssp             EECCCSSCCB-SCEEE-EETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE
T ss_pred             eCCCCcCCcc-eeEEE-EECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE
Confidence            4321121111 11122 236777777763         345889999887544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=94.56  E-value=0.85  Score=32.57  Aligned_cols=111  Identities=9%  Similarity=-0.033  Sum_probs=65.7

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC--CCcEEEEEeCCceEEEEEEe
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD--DGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~~~d~~~~~~~~~~~~   94 (139)
                      .++.+ .+++..+-...+.|.+.++............-.....++++|.+..|.-...  .+.|...++......... .
T Consensus        89 lAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-~  167 (619)
T 3s94_A           89 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-N  167 (619)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-C
T ss_pred             EEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-e
Confidence            44555 4556666677889999998654332223233344578899886554443332  356666665533322222 2


Q ss_pred             CCCCcceeEEEEccCCc-EEEEEcCCCeEEEEEcCCC
Q psy11518         95 AHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~  130 (139)
                      .. ...+..+++++++. ++++-...+.|..+|+...
T Consensus       168 ~~-~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~  203 (619)
T 3s94_A          168 SE-IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT  203 (619)
T ss_dssp             SS-CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred             CC-CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence            22 22378999998655 4455556778998888654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.45  E-value=0.55  Score=29.95  Aligned_cols=108  Identities=7%  Similarity=0.060  Sum_probs=59.5

Q ss_pred             cCCcEEEEeCCC-----CeEEEEEccCCce--eeEEEecCCCeEEEEECCCCCEEEEecCC-----CcEEEEEeCCceEE
Q psy11518         22 ATSKLAASSGAD-----ETVVLYDMVKRKQ--SGALMQHEGTITCLKFTPEGSHLISCSDD-----GSIAIFRVGSWQLE   89 (139)
Q Consensus        22 ~~~~~l~~~~~~-----~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~   89 (139)
                      .++.+++.|+.+     ..+.+||+.+.+=  +..+.........+.+  ++..++.|+.+     ..+..||+.+....
T Consensus       120 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  197 (308)
T 1zgk_A          120 IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWR  197 (308)
T ss_dssp             ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEe
Confidence            377777777643     3577888876531  1111111222233333  56666777654     35888998876554


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCcee
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGRSA  133 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~  133 (139)
                      ..-..+........+.+  ++++++.|+.+     ..+.+||+.+.+..
T Consensus       198 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          198 MITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             eCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            33211111111122222  67788888754     56899999887544

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=94.37  E-value=0.13  Score=38.61  Aligned_cols=38  Identities=11%  Similarity=0.149  Sum_probs=33.5

Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +.+++..++..++++-+.|+++++|++.+++.+....+
T Consensus       238 ~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL  275 (950)
T 4gq2_M          238 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  275 (950)
T ss_dssp             EEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             EEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence            66777788888999999999999999999999887654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.37  E-value=0.68  Score=35.53  Aligned_cols=38  Identities=11%  Similarity=0.149  Sum_probs=32.7

Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +.+++..++..++++-+.|+++++||+.+++.+....+
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL  277 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL  277 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence            45566677889999999999999999999999888664

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=94.32  E-value=1.1  Score=33.02  Aligned_cols=117  Identities=8%  Similarity=-0.015  Sum_probs=67.1

Q ss_pred             EEecC-CcEEEEeCCC-CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEEEeCCceEEEEEEeC
Q psy11518         19 SVAAT-SKLAASSGAD-ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQLEKLFKKA   95 (139)
Q Consensus        19 ~~~~~-~~~l~~~~~~-~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~   95 (139)
                      ++.+. +.++.+-... +.|...++........+...-.....|++++....|. +-.....|...++............
T Consensus       520 aVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~  599 (791)
T 3m0c_C          520 VVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDE  599 (791)
T ss_dssp             EEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECT
T ss_pred             EEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCC
Confidence            33443 4444443333 6777777754433333333334678999997655554 4455667999998654444333221


Q ss_pred             CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         96 HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        96 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..-.....|++. .+.++++-...+.|...|..+++.+..+
T Consensus       600 ~~l~~P~glav~-~~~lYwtD~~~~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          600 KRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred             CccCCCCEEEEe-CCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence            111125567764 3456666667788998888777665443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.83  E-value=0.74  Score=29.11  Aligned_cols=109  Identities=14%  Similarity=0.102  Sum_probs=61.1

Q ss_pred             cCCcEEEEeCCC-----CeEEEEEccCCcee--eEEEecCCCeEEEEECCCCCEEEEecCC-----CcEEEEEeCCceEE
Q psy11518         22 ATSKLAASSGAD-----ETVVLYDMVKRKQS--GALMQHEGTITCLKFTPEGSHLISCSDD-----GSIAIFRVGSWQLE   89 (139)
Q Consensus        22 ~~~~~l~~~~~~-----~~v~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~   89 (139)
                      .++.+++.|+.+     ..+.+||+.+.+=.  ..+........++.+  +++.++.|+.+     ..+..||+.+....
T Consensus       111 ~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  188 (301)
T 2vpj_A          111 LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWT  188 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEE
T ss_pred             ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEE
Confidence            377777777643     36888888765322  111111122223333  56677777654     35889998877654


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCceeE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGRSAY  134 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~  134 (139)
                      ..-..+........+.  -++++++.|+.+     ..+.+||+.+.+...
T Consensus       189 ~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  236 (301)
T 2vpj_A          189 NVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTT  236 (301)
T ss_dssp             EECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             eCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEE
Confidence            4321121111112222  267778888753     468999998876543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.80  E-value=0.41  Score=31.53  Aligned_cols=69  Identities=10%  Similarity=0.003  Sum_probs=45.9

Q ss_pred             CEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEc--c-CCcEEEEE-cCCCeEEEEEcCCCceeEEE
Q psy11518         67 SHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIH--P-SGKLALSV-GKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        67 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~~-~~d~~i~i~d~~~~~~~~~~  136 (139)
                      ..++.++.||.|.-+|..+|+..+.+....... +....-.  + ++..++.. +.||.|..+|..+|.....+
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p-~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~   83 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQP-LIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL   83 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCC-SEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCC-cEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence            367788999999999999999999985441112 2221100  1 23334343 68999999999988665544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.78  E-value=0.79  Score=29.29  Aligned_cols=108  Identities=12%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             CCcEEEEeCCC--------CeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecC-C-----CcEEEEEeCCc
Q psy11518         23 TSKLAASSGAD--------ETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSD-D-----GSIAIFRVGSW   86 (139)
Q Consensus        23 ~~~~l~~~~~~--------~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----~~i~~~d~~~~   86 (139)
                      ++.+++.|+.+        ..+.+||+.+.+  .+..+.........+.+  +++.++.|+. +     ..+..||..+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~  175 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPKKF  175 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence            77777777732        358888887653  11111111222223332  5566677765 2     35889998876


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCC-----eEEEEEcCCCceeE
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDK-----TLRTWNLVKGRSAY  134 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~  134 (139)
                      +....-..+.... -.+++ .-++++++.|+.++     .+.+||+.+.+...
T Consensus       176 ~W~~~~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          176 EWKELAPMQTARS-LFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             EEEECCCCSSCCB-SCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             eEEECCCCCCchh-ceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            5443321111111 11222 22678888887543     58899998875543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.61  E-value=1.5  Score=31.81  Aligned_cols=108  Identities=13%  Similarity=0.130  Sum_probs=61.5

Q ss_pred             CCcEEEEeCCC------CeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCC--cEEEEEeCCceEEEEE
Q psy11518         23 TSKLAASSGAD------ETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDG--SIAIFRVGSWQLEKLF   92 (139)
Q Consensus        23 ~~~~l~~~~~~------~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~   92 (139)
                      ++.+++.|+.+      ..+.+||+.+.+  .+..+....... +++...++..++.|+.++  .+.+||..+......-
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            77777777743      357788887642  121111111222 223323777888887654  6899999887654332


Q ss_pred             E---eCCCCcceeEEEEccC-CcEEEEEcC--C-----CeEEEEEcCCCc
Q psy11518         93 K---KAHKGTAVNHISIHPS-GKLALSVGK--D-----KTLRTWNLVKGR  131 (139)
Q Consensus        93 ~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----~~i~i~d~~~~~  131 (139)
                      .   .+........+.+..+ +++++.||.  +     ..+.+||+.+.+
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            1   0111111233555555 677777775  2     458999998877

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=93.56  E-value=1  Score=29.87  Aligned_cols=94  Identities=10%  Similarity=0.081  Sum_probs=56.9

Q ss_pred             CCeEEEEEccCCce----eeEEEec-CCCeEEEEECCCCCEEEEecC---C------------CcEEEEEeCCceEEEEE
Q psy11518         33 DETVVLYDMVKRKQ----SGALMQH-EGTITCLKFTPEGSHLISCSD---D------------GSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        33 ~~~v~i~~~~~~~~----~~~~~~~-~~~v~~~~~~~~~~~l~~~~~---d------------~~i~~~d~~~~~~~~~~   92 (139)
                      +..|.+|++.....    +..+.+. -...+.+.+.++|+..++...   |            ..-.+|.+..++.....
T Consensus       138 ~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~  217 (355)
T 3sre_A          138 SSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVA  217 (355)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEE
T ss_pred             CCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEee
Confidence            56788888765422    2223222 235688999999988777641   1            22344444444332222


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEE-cCCCeEEEEEcCC
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSV-GKDKTLRTWNLVK  129 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~  129 (139)
                        ..-.. .+.++|+||++.++.+ +..+.|..|++..
T Consensus       218 --~~l~~-pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          218 --EGFDF-ANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             --EEESS-EEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             --cCCcc-cCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence              11122 6889999999876655 5678999999864

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=93.55  E-value=0.74  Score=32.79  Aligned_cols=59  Identities=19%  Similarity=0.214  Sum_probs=42.6

Q ss_pred             eEEEEECCCCCEEEEecCC------------CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEE
Q psy11518         57 ITCLKFTPEGSHLISCSDD------------GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSV  116 (139)
Q Consensus        57 v~~~~~~~~~~~l~~~~~d------------~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  116 (139)
                      .-.|.|+|.|++++.-..+            ..+.+.+..+++....+. ...+..++.++|+||++.|++.
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~-~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMV-GPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEE-CCTTCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEe-CCCCccCcCeeECCCCCEEEEE
Confidence            3568999999977765433            235566666777776663 4455669999999999988765

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=93.41  E-value=0.92  Score=28.90  Aligned_cols=109  Identities=13%  Similarity=0.105  Sum_probs=61.3

Q ss_pred             cCCcEEEEeCCC-----CeEEEEEccCCce--eeEEEecCCCeEEEEECCCCCEEEEecCC-----CcEEEEEeCCceEE
Q psy11518         22 ATSKLAASSGAD-----ETVVLYDMVKRKQ--SGALMQHEGTITCLKFTPEGSHLISCSDD-----GSIAIFRVGSWQLE   89 (139)
Q Consensus        22 ~~~~~l~~~~~~-----~~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~~~d~~~~~~~   89 (139)
                      .++.+++.|+.+     ..+.+||+.+.+=  +..+.........+.+  +++.++.|+.+     ..+.+||+.+.+..
T Consensus       167 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  244 (308)
T 1zgk_A          167 LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWT  244 (308)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEE
Confidence            377777877754     4588888876521  1111111222233333  56677777654     45889998877654


Q ss_pred             EEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCceeE
Q psy11518         90 KLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGRSAY  134 (139)
Q Consensus        90 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~  134 (139)
                      ..-..+.... -.+++. -++++++.|+.+     ..+.+||+++.+...
T Consensus       245 ~~~~~p~~r~-~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~  292 (308)
T 1zgk_A          245 FVAPMKHRRS-ALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE  292 (308)
T ss_dssp             ECCCCSSCCB-SCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             ECCCCCCCcc-ceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEee
Confidence            3321121111 112222 267788888743     458899998876544

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=93.30  E-value=1.6  Score=31.29  Aligned_cols=111  Identities=9%  Similarity=0.062  Sum_probs=67.3

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec--CCCcEEEEEeCCceEEEEEEe
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS--DDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      .++.| .+++..+-...+.|.+.++........+...-.....++++|....|.-..  ..+.|...++.........  
T Consensus        85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~--  162 (628)
T 4a0p_A           85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV--  162 (628)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--
T ss_pred             EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE--
Confidence            34455 455666666778899888765433222223334568999998544444333  2566777777654433333  


Q ss_pred             CCCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcCCCc
Q psy11518         95 AHKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~  131 (139)
                      ..-. .+..+++++++..| ++-...+.|..+|+....
T Consensus       163 ~~~~-~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~  199 (628)
T 4a0p_A          163 PNVG-RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLN  199 (628)
T ss_dssp             CSCS-SEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCC-CcceEEEccccCEEEEEECCCCEEEEEcCCCCc
Confidence            2222 37899999965544 455567889999986543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=93.27  E-value=1.3  Score=30.30  Aligned_cols=101  Identities=13%  Similarity=0.175  Sum_probs=55.3

Q ss_pred             EEEecCCcEEEEeCCCCeEEEEEccCCceee--EEEe------cCCCeEEEEECCC---CCEE-EEecC-----------
Q psy11518         18 RSVAATSKLAASSGADETVVLYDMVKRKQSG--ALMQ------HEGTITCLKFTPE---GSHL-ISCSD-----------   74 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~--~~~~------~~~~v~~~~~~~~---~~~l-~~~~~-----------   74 (139)
                      +++.++|.++++-...+.|.+++..+++...  .+..      .......++|+|+   ...| ++-+.           
T Consensus        32 ~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~~~~  111 (454)
T 1cru_A           32 LLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDKELP  111 (454)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--CCSC
T ss_pred             EEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCccccc
Confidence            3444588888877665678888765554321  1211      2345678999995   4444 33322           


Q ss_pred             -CCcEEEEEeCCc--eE---EEEEE--eCCCCcceeEEEEccCCcEEEEEcC
Q psy11518         75 -DGSIAIFRVGSW--QL---EKLFK--KAHKGTAVNHISIHPSGKLALSVGK  118 (139)
Q Consensus        75 -d~~i~~~d~~~~--~~---~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~  118 (139)
                       ...|.-++....  ..   ...+.  .....+....++|.|+|.++++.++
T Consensus       112 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          112 NQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence             124555554321  11   11111  1111222688999999998777654

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=93.18  E-value=1.2  Score=29.40  Aligned_cols=96  Identities=16%  Similarity=0.140  Sum_probs=53.3

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCc-eeeEEE---ecCCCeEEEEECCC---CCEE-EEecC---C----CcEEEEEe
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRK-QSGALM---QHEGTITCLKFTPE---GSHL-ISCSD---D----GSIAIFRV   83 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~-~~~~~~---~~~~~v~~~~~~~~---~~~l-~~~~~---d----~~i~~~d~   83 (139)
                      .+.+++.++++ ..++.|.+++ .+++ .+..+.   ........++++|+   +..| ++-..   +    ..|..|+.
T Consensus        35 a~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~  112 (354)
T 3a9g_A           35 APLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRL  112 (354)
T ss_dssp             EEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEE
T ss_pred             EEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEE
Confidence            34447875555 4458999887 3454 121111   12345789999997   4444 33332   2    46777776


Q ss_pred             CCc--e---E--E-EEEEeCCCCcceeEEEEccCCcEEEEEc
Q psy11518         84 GSW--Q---L--E-KLFKKAHKGTAVNHISIHPSGKLALSVG  117 (139)
Q Consensus        84 ~~~--~---~--~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~  117 (139)
                      ...  .   .  + ..+. .........++|.|+|.++++.+
T Consensus       113 ~~~~~~~~~~~~l~~~~~-~~~~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          113 DGSTFKLKEVKTLIDGIP-GAYIHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             CSSSCCEEEEEEEEEEEE-CCSSCCCCCEEECTTSCEEEECC
T ss_pred             CCCCcCcCccEEEEEcCC-CCCCcCCceEEECCCCcEEEEEC
Confidence            543  1   1  1 1122 11111256799999998777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.16  E-value=1.8  Score=31.41  Aligned_cols=111  Identities=15%  Similarity=0.204  Sum_probs=61.3

Q ss_pred             CCcEEEEeCCCC--eEEEEEccCCcee--eE---EEecCCCeEEEEECCC-CCEEEEecC--C-----CcEEEEEeCCce
Q psy11518         23 TSKLAASSGADE--TVVLYDMVKRKQS--GA---LMQHEGTITCLKFTPE-GSHLISCSD--D-----GSIAIFRVGSWQ   87 (139)
Q Consensus        23 ~~~~l~~~~~~~--~v~i~~~~~~~~~--~~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----~~i~~~d~~~~~   87 (139)
                      ++.+++.|+.++  .+.+||+.+.+=.  ..   .........++.+..+ ++.++.|+.  +     ..+..||+.+..
T Consensus       500 ~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          500 DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            788888887654  6889998765311  10   1111112233455544 566677765  2     348899998776


Q ss_pred             ------EEEEEEeCCCCcceeEEEEccCCcEEEEEcC--------CCeEEEEEcCCCcee
Q psy11518         88 ------LEKLFKKAHKGTAVNHISIHPSGKLALSVGK--------DKTLRTWNLVKGRSA  133 (139)
Q Consensus        88 ------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--------d~~i~i~d~~~~~~~  133 (139)
                            .............-..++...++++++.||.        ...+.+||+.+.+..
T Consensus       580 w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          580 ATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             SSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             cccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence                  2222211111110122333334788888874        345999999887654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=93.01  E-value=1.8  Score=31.05  Aligned_cols=106  Identities=8%  Similarity=-0.002  Sum_probs=63.4

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCC-EEEEecCCCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS-HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                      ++.++.+-..++.|..+++........+.........+++++.+. +..+-...+.|.+.++......... ...-. .+
T Consensus        48 ~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-~~~l~-~P  125 (628)
T 4a0p_A           48 DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-WKDLD-SP  125 (628)
T ss_dssp             TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-CSSCC-CE
T ss_pred             CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-eCCCC-Cc
Confidence            455556666778888888765443333332223457888887544 4456566778999998654332222 22223 37


Q ss_pred             eEEEEccC-CcEEEEE-cCCCeEEEEEcCCC
Q psy11518        102 NHISIHPS-GKLALSV-GKDKTLRTWNLVKG  130 (139)
Q Consensus       102 ~~~~~~~~-~~~l~~~-~~d~~i~i~d~~~~  130 (139)
                      ..++++|. |.++++- +..+.|...++...
T Consensus       126 ~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~  156 (628)
T 4a0p_A          126 RALALDPAEGFMYWTEWGGKPKIDRAAMDGS  156 (628)
T ss_dssp             EEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             ccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence            89999985 4444444 23567777777544

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.97  E-value=0.57  Score=29.13  Aligned_cols=68  Identities=13%  Similarity=0.058  Sum_probs=43.4

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEEeCCce------EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518         55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ------LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      ..+..++|+|++.+.+.  .+|.+.-.+..+..      ....+....-.. -..+.|.|+|.+.++  .||.|.-++-
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            36779999999987766  67766655543311      122221211222 477899999998888  5588876665

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=92.58  E-value=1.8  Score=29.99  Aligned_cols=132  Identities=14%  Similarity=0.165  Sum_probs=79.7

Q ss_pred             EEEeecceeeEEEEec-CCcEEEEeCCCCeEEEEEccC-CceeeEEEecC----CCeEEEEECCCCCEEEEec-------
Q psy11518          7 TFVTHSHTASVRSVAA-TSKLAASSGADETVVLYDMVK-RKQSGALMQHE----GTITCLKFTPEGSHLISCS-------   73 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~-~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-------   73 (139)
                      .++.+.....|.-+.| +.+.|+..+. ..|.-|++.. ..+.+.+..|.    ..|..-..+++.++++..+       
T Consensus        98 klks~~~~e~VvfWkWis~~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~  176 (494)
T 1bpo_A           98 KMKAHTMTDDVTFWKWISLNTVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNR  176 (494)
T ss_dssp             EEEEEECSSCCCEEEEEETTEEEEECS-SEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTE
T ss_pred             hhcceecCCCceEEEecCCCeEEEEcC-CeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCc
Confidence            3444445567888888 6666666553 6788899864 45667776553    3455555677777765222       


Q ss_pred             CCCcEEEEEeCCce------------------------------------EEEEEEeCCC--C-----------------
Q psy11518         74 DDGSIAIFRVGSWQ------------------------------------LEKLFKKAHK--G-----------------   98 (139)
Q Consensus        74 ~d~~i~~~d~~~~~------------------------------------~~~~~~~~~~--~-----------------   98 (139)
                      -.|.+.+|..+...                                    .+..++..+.  +                 
T Consensus       177 v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~  256 (494)
T 1bpo_A          177 VVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEA  256 (494)
T ss_dssp             EEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTS
T ss_pred             ccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCccc
Confidence            12445555543211                                    1111111111  0                 


Q ss_pred             --cceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEecC
Q psy11518         99 --TAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNLS  139 (139)
Q Consensus        99 --~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~  139 (139)
                        .=..++..++....+...+.-|.+++||++++..++.-.++
T Consensus       257 ~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs  299 (494)
T 1bpo_A          257 QNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRIS  299 (494)
T ss_dssp             TTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred             ccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeeccc
Confidence              00345666666677788888899999999999999876654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.49  E-value=1.1  Score=27.96  Aligned_cols=98  Identities=9%  Similarity=0.061  Sum_probs=55.3

Q ss_pred             EEEecCCcEEEEeCCCCeEEEEEccCCcee-----eEEE---ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE-
Q psy11518         18 RSVAATSKLAASSGADETVVLYDMVKRKQS-----GALM---QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL-   88 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~-----~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~-   88 (139)
                      ..+.+++.+.++  .++.+.-.+..+....     .+.-   +... ..++.|.|++.+.++  .||.|.-++-.+... 
T Consensus        46 laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~  120 (236)
T 1tl2_A           46 LFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQSDTD  120 (236)
T ss_dssp             EEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCCSTTC
T ss_pred             EEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCcCCCC
Confidence            344447776666  6677666665442110     1111   1111 367889999998877  568887666432110 


Q ss_pred             -----EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEE
Q psy11518         89 -----EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLR  123 (139)
Q Consensus        89 -----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~  123 (139)
                           -..+....-. .+..+.+.|+|.+.++.  |+.+.
T Consensus       121 ~Wl~~a~~vg~~gw~-~~~~lff~p~G~Lyav~--dg~ly  157 (236)
T 1tl2_A          121 NWIARATEVGSGGWS-GFKFLFFHPNGYLYAVH--GQQFY  157 (236)
T ss_dssp             CHHHHSEEEECSSGG-GEEEEEECTTSCEEEEE--TTEEE
T ss_pred             ceeccccEeccCCCC-ceEEEEECCCceEEEEe--CCcEE
Confidence                 1122111112 37889999999988777  66643

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.32  E-value=1.6  Score=28.92  Aligned_cols=78  Identities=18%  Similarity=0.356  Sum_probs=48.2

Q ss_pred             CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEe-cCCCcEEEEEeCC-ceEE--EEEEeCCCCcceeEEEEcc-
Q psy11518         34 ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC-SDDGSIAIFRVGS-WQLE--KLFKKAHKGTAVNHISIHP-  108 (139)
Q Consensus        34 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~~~d~~~-~~~~--~~~~~~~~~~~v~~~~~~~-  108 (139)
                      +.|.-++.  ++ +..+...-...+.++|+|+++.+..+ +..+.|..|++.. +...  ..+  .. ...+-.+++.+ 
T Consensus       203 g~vyr~d~--~~-~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~-~g~PDGi~vD~e  276 (355)
T 3sre_A          203 SFVTYYSP--ND-VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SF-DTLVDNISVDPV  276 (355)
T ss_dssp             EEEEEECT--TC-CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--EC-SSEEEEEEECTT
T ss_pred             cEEEEEEC--Ce-EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eC-CCCCceEEEeCC
Confidence            44555554  33 22222223456899999999877654 5578899999863 3332  233  12 23378899999 


Q ss_pred             CCcEEEEEc
Q psy11518        109 SGKLALSVG  117 (139)
Q Consensus       109 ~~~~l~~~~  117 (139)
                      +|.+.+++.
T Consensus       277 ~G~lwva~~  285 (355)
T 3sre_A          277 TGDLWVGCH  285 (355)
T ss_dssp             TCCEEEEEE
T ss_pred             CCcEEEEec
Confidence            598777664

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=92.18  E-value=1.9  Score=29.49  Aligned_cols=55  Identities=15%  Similarity=0.247  Sum_probs=35.2

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCC------CCcceeEEEEccC
Q psy11518         55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH------KGTAVNHISIHPS  109 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~  109 (139)
                      .....++|.|+++++++-...+.|..++..++..........      ....+..++|+|+
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pd   87 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCC
Confidence            355799999999987776554568888765554433221211      1122779999994

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=92.08  E-value=1.5  Score=28.01  Aligned_cols=107  Identities=17%  Similarity=0.216  Sum_probs=56.7

Q ss_pred             CCcEEEEeCCC-------CeEEEEEccCCcee--eEEEecCCCeEEEEECCCCCEEEEecC------CCcEEEEEeCCce
Q psy11518         23 TSKLAASSGAD-------ETVVLYDMVKRKQS--GALMQHEGTITCLKFTPEGSHLISCSD------DGSIAIFRVGSWQ   87 (139)
Q Consensus        23 ~~~~l~~~~~~-------~~v~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~~~~~   87 (139)
                      ++.+++.|+.+       ..+.+||+.+.+=.  ..+.........+.  .+++.++.|+.      -..+..||..+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  186 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD  186 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence            67777777753       35778887665311  11111111112222  35666666654      2358899988776


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCC-----CeEEEEEcCCCcee
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKD-----KTLRTWNLVKGRSA  133 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~  133 (139)
                      ....-..+.... -.+++. -++++++.|+.+     ..+.+||+.+.+..
T Consensus       187 W~~~~~~p~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          187 WKDLAPMKTPRS-MFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             EEEECCCSSCCB-SCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             EEECCCCCCCcc-cceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            544321121111 112222 367777877643     35778998877644

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.76  E-value=1.9  Score=28.41  Aligned_cols=74  Identities=14%  Similarity=0.114  Sum_probs=44.2

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEEeCCce-EEEEEEe-CCCCcceeEEEEccC----CcEEEEEcC---C----Ce
Q psy11518         55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ-LEKLFKK-AHKGTAVNHISIHPS----GKLALSVGK---D----KT  121 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~-~~~~~~v~~~~~~~~----~~~l~~~~~---d----~~  121 (139)
                      .....++|.|+++++++ ..++.|.++| ..+. ....+.. ......+..++++|+    +.++++-..   +    ..
T Consensus        29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTEEEEE-ETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCeEEEE-eCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            44689999999985555 4558898887 3454 1111110 111123789999997    444444332   3    56


Q ss_pred             EEEEEcCCC
Q psy11518        122 LRTWNLVKG  130 (139)
Q Consensus       122 i~i~d~~~~  130 (139)
                      |..|+....
T Consensus       107 v~r~~~~~~  115 (354)
T 3a9g_A          107 VIRGRLDGS  115 (354)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEECCC
Confidence            777777654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=91.59  E-value=2  Score=28.42  Aligned_cols=99  Identities=15%  Similarity=0.111  Sum_probs=56.3

Q ss_pred             EEEecCCcEEEEeCCCCeEEEEEccCCceee--EE----EecCCCeEEEEECCC----CCEEEEe--cCCCcEEEEEeCC
Q psy11518         18 RSVAATSKLAASSGADETVVLYDMVKRKQSG--AL----MQHEGTITCLKFTPE----GSHLISC--SDDGSIAIFRVGS   85 (139)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~--~~----~~~~~~v~~~~~~~~----~~~l~~~--~~d~~i~~~d~~~   85 (139)
                      +.+.+++.++++-...|.|++++...++...  .+    .........++++|+    +...++-  ..+..|.-|....
T Consensus        37 ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~  116 (347)
T 3das_A           37 LAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDE  116 (347)
T ss_dssp             EEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCT
T ss_pred             EEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCC
Confidence            3444588888877768999998866554321  11    123456789999995    3333322  2344555555543


Q ss_pred             c----------eEEE-EEEeCCCCcceeEEEEccCCcEEEEEc
Q psy11518         86 W----------QLEK-LFKKAHKGTAVNHISIHPSGKLALSVG  117 (139)
Q Consensus        86 ~----------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~  117 (139)
                      .          +.+. .+.. ...+....+.|.|+|.++++.+
T Consensus       117 ~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          117 KKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             TSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECB
T ss_pred             CCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEEC
Confidence            1          1111 2211 1112256799999998777755

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=91.49  E-value=0.62  Score=33.96  Aligned_cols=36  Identities=8%  Similarity=0.178  Sum_probs=29.4

Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      |.++.+  +..++++-+.|.++++||+++++.+....+
T Consensus       224 Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          224 ISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             EEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            444444  578999999999999999999998887654

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=91.25  E-value=3  Score=29.77  Aligned_cols=60  Identities=17%  Similarity=0.205  Sum_probs=40.9

Q ss_pred             CeEEEEECCCCCEEEEecC------------CCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEE
Q psy11518         56 TITCLKFTPEGSHLISCSD------------DGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSV  116 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~------------d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  116 (139)
                      ....|.|+++|.+.+..+.            ...+..++..+++....+ .......++.++|+||++.|+++
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl-~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFM-VGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEE-ECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEE-eCCCCccccCCEECCCCCEEEEE
Confidence            4567899999998874332            124566666667766655 32233448999999999988765

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=90.93  E-value=2.2  Score=27.69  Aligned_cols=99  Identities=7%  Similarity=0.040  Sum_probs=44.6

Q ss_pred             CeEEEEEccCCce--eeEEEe-cCCCeEEEEECCCCCEEEEecC------CCcEEEEEe--CCceEEEEEEeCCCCccee
Q psy11518         34 ETVVLYDMVKRKQ--SGALMQ-HEGTITCLKFTPEGSHLISCSD------DGSIAIFRV--GSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        34 ~~v~i~~~~~~~~--~~~~~~-~~~~v~~~~~~~~~~~l~~~~~------d~~i~~~d~--~~~~~~~~~~~~~~~~~v~  102 (139)
                      ..+.+||+.+.+=  +..+.. .......+.+  +++.++.|+.      ...+..||+  .+......-..........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG  245 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence            4788999877532  221111 1111222222  5566666653      235677876  4333322211111111112


Q ss_pred             EEEEccCCcEEEEEcCC----------------------CeEEEEEcCCCceeE
Q psy11518        103 HISIHPSGKLALSVGKD----------------------KTLRTWNLVKGRSAY  134 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~d----------------------~~i~i~d~~~~~~~~  134 (139)
                      +.+...++++++.|+.+                      ..+.+||+.+.+...
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~  299 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDK  299 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEE
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceee
Confidence            22233467777887732                      257889998765443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.93  E-value=2.3  Score=27.90  Aligned_cols=96  Identities=13%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCce--eeEEE---ecCCCeEEEEECCC---CCEEEEe-cCC-----CcEEEEEeC
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQ--SGALM---QHEGTITCLKFTPE---GSHLISC-SDD-----GSIAIFRVG   84 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~--~~~~~---~~~~~v~~~~~~~~---~~~l~~~-~~d-----~~i~~~d~~   84 (139)
                      .+.+++.++++- .++.|.+++  +++.  +..+.   ........++++|+   +..+..+ ...     ..|..++..
T Consensus        37 a~~pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~  113 (352)
T 2ism_A           37 AFLPDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHL  113 (352)
T ss_dssp             EECTTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEEC
T ss_pred             EEcCCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeC
Confidence            334478765554 558999888  4432  11111   12346789999998   4444433 322     567788876


Q ss_pred             CceE---EEEEE-eC---CCCcceeEEEEccCCcEEEEEc
Q psy11518         85 SWQL---EKLFK-KA---HKGTAVNHISIHPSGKLALSVG  117 (139)
Q Consensus        85 ~~~~---~~~~~-~~---~~~~~v~~~~~~~~~~~l~~~~  117 (139)
                      ....   ...+. .+   ........++|.|+|.++++.+
T Consensus       114 ~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          114 GERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             SSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             CCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            4321   11111 11   1112256899999998777654

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=90.85  E-value=0.6  Score=34.01  Aligned_cols=38  Identities=3%  Similarity=-0.034  Sum_probs=31.8

Q ss_pred             eeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEe
Q psy11518         15 ASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ   52 (139)
Q Consensus        15 ~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~   52 (139)
                      ..|.++.++..++++-+.|+++|+|++++++++.+..-
T Consensus       222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            34666677888999999999999999999988877653

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=90.34  E-value=2.6  Score=30.13  Aligned_cols=91  Identities=13%  Similarity=0.223  Sum_probs=66.7

Q ss_pred             EEEeCCCCeEEEEEccCCceeeEEEec-------------------------CCC--eEEEEECC---CCCEEEEecC-C
Q psy11518         27 AASSGADETVVLYDMVKRKQSGALMQH-------------------------EGT--ITCLKFTP---EGSHLISCSD-D   75 (139)
Q Consensus        27 l~~~~~~~~v~i~~~~~~~~~~~~~~~-------------------------~~~--v~~~~~~~---~~~~l~~~~~-d   75 (139)
                      +.+|+..|.|+++-+.+++.+..+.-.                         .+.  -..+++..   +|+++..-.. +
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            778999999999999998877665210                         000  12344432   6788877765 5


Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCcceeEEEEc--cCCcEEEEEcC
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIH--PSGKLALSVGK  118 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~  118 (139)
                      ..|-..+++..+....+..+.... +.+++|-  |+..+++++++
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~-~Hg~~~~~~p~T~yv~~~~e  196 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQA-IHGLRLQKVPHTKYVFANAE  196 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSC-EEEEEECCSSBCCEEEEEEC
T ss_pred             cceEEEECCcEeeceeEeCCCCcC-cccccccccCCccEEEecce
Confidence            668888999999888887776666 8888887  78888888875

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.29  E-value=2.2  Score=28.05  Aligned_cols=71  Identities=18%  Similarity=0.285  Sum_probs=41.4

Q ss_pred             CeEEEEECCCCC-EEEEecCCCcEEEEEeCCceEEEEEE------eCCCCcceeEEEEccC----CcEEEEEcC------
Q psy11518         56 TITCLKFTPEGS-HLISCSDDGSIAIFRVGSWQLEKLFK------KAHKGTAVNHISIHPS----GKLALSVGK------  118 (139)
Q Consensus        56 ~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~------~~~~~~~v~~~~~~~~----~~~l~~~~~------  118 (139)
                      ....++|.|+++ ++++ ...|.|.+++.. +.....+.      ...... +..++++|+    +.+.++-..      
T Consensus        19 ~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g-~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGG-LLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             SEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCS-EEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CcEEEEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCC-ceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            458999999999 5544 457889988843 33221110      111223 688999995    444444322      


Q ss_pred             -CCeEEEEEcCC
Q psy11518        119 -DKTLRTWNLVK  129 (139)
Q Consensus       119 -d~~i~i~d~~~  129 (139)
                       ...|.-|++..
T Consensus        96 ~~~~v~r~~~~~  107 (353)
T 2g8s_A           96 AGTAVGYGRLSD  107 (353)
T ss_dssp             EEEEEEEEEECT
T ss_pred             ceeEEEEEEECC
Confidence             23566666643

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.98  E-value=6.5  Score=31.60  Aligned_cols=126  Identities=13%  Similarity=0.163  Sum_probs=70.9

Q ss_pred             cceeeEEEEec-CCcEEEEeCCCCeEEEEEccC-CceeeEEEec----CCCeEEEEECCCCCEEEEec-------CCCcE
Q psy11518         12 SHTASVRSVAA-TSKLAASSGADETVVLYDMVK-RKQSGALMQH----EGTITCLKFTPEGSHLISCS-------DDGSI   78 (139)
Q Consensus        12 ~~~~~v~~~~~-~~~~l~~~~~~~~v~i~~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d~~i   78 (139)
                      ....+|.-+.| +.+.|+..+ +..|.-|++.. ..|...|..|    ...|..-.-+++.++++..+       -.|.+
T Consensus       103 ~~~e~VvfWkWis~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~m  181 (1630)
T 1xi4_A          103 TMTDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAM  181 (1630)
T ss_pred             ccCCCceEEEecCCCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccccee
Confidence            34567888888 666666555 35688899863 3454444444    23444445566666654221       23556


Q ss_pred             EEEEeCCc------------------------------------eEEEEEEeCCC--Cc-------------------ce
Q psy11518         79 AIFRVGSW------------------------------------QLEKLFKKAHK--GT-------------------AV  101 (139)
Q Consensus        79 ~~~d~~~~------------------------------------~~~~~~~~~~~--~~-------------------~v  101 (139)
                      .+|.....                                    ..+..+...+.  +.                   -+
T Consensus       182 QLyS~er~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp  261 (1630)
T 1xi4_A          182 QLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP  261 (1630)
T ss_pred             eeeecccccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcc
Confidence            66654221                                    11111111111  00                   02


Q ss_pred             eEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        102 NHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .++..++....+...+.-|.+++||+.++..++.-.+
T Consensus       262 v~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri  298 (1630)
T 1xi4_A          262 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI  298 (1630)
T ss_pred             eEEEeccccCEEEEEecCceEEEEecccchhhhhccc
Confidence            3455556566677777889999999999988765443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=89.83  E-value=2.9  Score=27.40  Aligned_cols=73  Identities=18%  Similarity=0.267  Sum_probs=45.4

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeC---CCCcceeEEEEccC---CcEE-EEEcCC-----CeE
Q psy11518         55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA---HKGTAVNHISIHPS---GKLA-LSVGKD-----KTL  122 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~v~~~~~~~~---~~~l-~~~~~d-----~~i  122 (139)
                      .....++|.|+++++++ ...+.|.+++  .+.........   ........++++|+   +..| ++-...     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            34579999999986655 4568899888  44432222111   11223889999998   4444 443332     678


Q ss_pred             EEEEcCCC
Q psy11518        123 RTWNLVKG  130 (139)
Q Consensus       123 ~i~d~~~~  130 (139)
                      ..|+...+
T Consensus       108 ~r~~~~~~  115 (352)
T 2ism_A          108 VRLRHLGE  115 (352)
T ss_dssp             EEEEECSS
T ss_pred             EEEEeCCC
Confidence            88887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=88.00  E-value=3.9  Score=26.43  Aligned_cols=104  Identities=13%  Similarity=0.151  Sum_probs=55.3

Q ss_pred             eEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEE-EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE
Q psy11518         16 SVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGAL-MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        16 ~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      .+..+.+  ++.+++.+...+..+-.|- .++.-..+ ......+..+.+.++++.++.+ .+|.+...+...++.-..+
T Consensus       164 ~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~-~~G~~~~s~~D~G~tW~~~  241 (327)
T 2xbg_A          164 VMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNRTTSRRLHNMGFTPDGRLWMIV-NGGKIAFSDPDNSENWGEL  241 (327)
T ss_dssp             CEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEECCSSSCEEEEEECTTSCEEEEE-TTTEEEEEETTEEEEECCC
T ss_pred             ceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCCCCCCccceeEECCCCCEEEEe-CCceEEEecCCCCCeeEec
Confidence            4455554  6667766655444444432 12222222 1344567888999988766554 4676666532223322222


Q ss_pred             EeC--CCCcceeEEEEccCCcEEEEEcCCCeE
Q psy11518         93 KKA--HKGTAVNHISIHPSGKLALSVGKDKTL  122 (139)
Q Consensus        93 ~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i  122 (139)
                      ..+  .....+..+.+.+++..++++. ++.+
T Consensus       242 ~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          242 LSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL  272 (327)
T ss_dssp             BCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred             cCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence            112  1112378889988777666654 5555

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=87.80  E-value=1.4  Score=33.18  Aligned_cols=37  Identities=19%  Similarity=0.167  Sum_probs=31.5

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE
Q psy11518         56 TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~   92 (139)
                      .+.++...++..++++-+.|+++++|++.++++....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4567777778889999999999999999999887765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=87.52  E-value=5.5  Score=27.67  Aligned_cols=67  Identities=12%  Similarity=0.034  Sum_probs=48.6

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      .++..-..++.-+.-|.+++||++++.++..-+-....|...+......-++...++|.|.-..++.
T Consensus       265 qvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          265 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             EecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            3444555677778889999999999999988776677777666666556666666777766655544

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=87.32  E-value=6.4  Score=28.19  Aligned_cols=110  Identities=9%  Similarity=0.005  Sum_probs=64.5

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEE-ecCCCeEEEEECCC-CCEEEEecC-CCcEEEEEeCCceEEEEEE
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTPE-GSHLISCSD-DGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~-d~~i~~~d~~~~~~~~~~~   93 (139)
                      +++.| .+++..+-...+.|.+.++.... ...+. ..-.....+++.|. |.++.+-.. .+.|...++..... ..+.
T Consensus       397 lAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~  474 (619)
T 3s94_A          397 IAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLV  474 (619)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEE
T ss_pred             eEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEE
Confidence            34455 45566666677888888876543 33332 23345689999986 444444322 35666666543322 2231


Q ss_pred             eCCCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcCCC
Q psy11518         94 KAHKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~  130 (139)
                      ...-.. +..+++++++..| ++-+..+.|..+++...
T Consensus       475 ~~~l~~-P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~  511 (619)
T 3s94_A          475 NTSLGW-PNGLALDYDEGKIYWGDAKTDKIEVMNTDGT  511 (619)
T ss_dssp             CSSCSC-EEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred             eCCCCC-CeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence            222233 7889999865554 44456678888888544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=86.47  E-value=4.6  Score=25.72  Aligned_cols=110  Identities=12%  Similarity=0.065  Sum_probs=57.0

Q ss_pred             ecCCcEEEEeCC----CC-------eEEEEEccCCce--eeEEEecCCCeEEEEECCCCCEEEEecCC-------CcEEE
Q psy11518         21 AATSKLAASSGA----DE-------TVVLYDMVKRKQ--SGALMQHEGTITCLKFTPEGSHLISCSDD-------GSIAI   80 (139)
Q Consensus        21 ~~~~~~l~~~~~----~~-------~v~i~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------~~i~~   80 (139)
                      ..++.+++.|+.    ++       .+..||+.+.+=  +..+.........+.+  ++..++.|+.+       ..+.+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~  131 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC  131 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence            347788888873    11       267788766531  1111111112223333  55666666653       23778


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcC------CCeEEEEEcCCCceeE
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGK------DKTLRTWNLVKGRSAY  134 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~~  134 (139)
                      ||..+.+....-..+.... -.+++ ..++++++.|+.      -..+.+||+.+.+...
T Consensus       132 yd~~~~~W~~~~~~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~  189 (318)
T 2woz_A          132 YDPVAAKWSEVKNLPIKVY-GHNVI-SHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD  189 (318)
T ss_dssp             EETTTTEEEEECCCSSCEE-SCEEE-EETTEEEEECCEESSSCBCCCEEEEETTTTEEEE
T ss_pred             EeCCCCCEeECCCCCCccc-ccEEE-EECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE
Confidence            8887766543321111111 11122 246777777764      2458999998876443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.38  E-value=5  Score=26.00  Aligned_cols=95  Identities=13%  Similarity=0.123  Sum_probs=49.0

Q ss_pred             cCCcEEEEeCC-CCeEEEEEccC--C--ceeeEEE-ecCCCeEEEEECCCCCEEEEecC-C---------CcEEEEEeCC
Q psy11518         22 ATSKLAASSGA-DETVVLYDMVK--R--KQSGALM-QHEGTITCLKFTPEGSHLISCSD-D---------GSIAIFRVGS   85 (139)
Q Consensus        22 ~~~~~l~~~~~-~~~v~i~~~~~--~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------~~i~~~d~~~   85 (139)
                      .++.+++.|+. ...+..||+.+  .  +.+..+. ........+.+  +++.++.|+. +         ..+..||..+
T Consensus        18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~   95 (357)
T 2uvk_A           18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT   95 (357)
T ss_dssp             ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred             ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence            36777777764 34688889864  2  1111111 11122233333  5666666665 2         3588899887


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD  119 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  119 (139)
                      .+....-... ........+...++++++.|+.+
T Consensus        96 ~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           96 NSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             TEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred             CcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence            7654432111 11111222222578888888754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=86.14  E-value=7  Score=31.45  Aligned_cols=104  Identities=13%  Similarity=0.211  Sum_probs=65.3

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce-EEEEEEeC--CCCc
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ-LEKLFKKA--HKGT   99 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~--~~~~   99 (139)
                      ..+.++.-. ..++.|+|+++...+..+.- ...|.-..|-.... ++-.+ +..|.-|++.... +...+...  -.+.
T Consensus        76 ~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~  151 (1630)
T 1xi4_A           76 ASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGC  151 (1630)
T ss_pred             CcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcchhcccC
Confidence            444455443 68899999998887776653 34678888875443 33222 2369999996432 32222111  1133


Q ss_pred             ceeEEEEccCCcEEEEEc-------CCCeEEEEEcCCC
Q psy11518        100 AVNHISIHPSGKLALSVG-------KDKTLRTWNLVKG  130 (139)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~  130 (139)
                      .|..-..+++.+|++..|       -.|.+.+|+.+.+
T Consensus       152 QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~  189 (1630)
T 1xi4_A          152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  189 (1630)
T ss_pred             eeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence            477788889999887654       2477888877654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=85.91  E-value=5.6  Score=26.11  Aligned_cols=99  Identities=9%  Similarity=0.165  Sum_probs=51.8

Q ss_pred             EEEecCCc-EEEEeCCCCeEEEEEccCCce---eeEE----EecCCCeEEEEECCC---CCEE-EEecC-------CCcE
Q psy11518         18 RSVAATSK-LAASSGADETVVLYDMVKRKQ---SGAL----MQHEGTITCLKFTPE---GSHL-ISCSD-------DGSI   78 (139)
Q Consensus        18 ~~~~~~~~-~l~~~~~~~~v~i~~~~~~~~---~~~~----~~~~~~v~~~~~~~~---~~~l-~~~~~-------d~~i   78 (139)
                      +.+.++++ ++++ ...+.|++++.. +..   +..+    .........++++|+   ...+ ++-..       ...|
T Consensus        23 i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~~v  100 (353)
T 2g8s_A           23 LAFLPDNHGMLIT-LRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGTAV  100 (353)
T ss_dssp             EEECSTTCCEEEE-ETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEEEE
T ss_pred             EEEcCCCCEEEEE-eCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCceeEE
Confidence            33445888 5554 456899998853 322   1111    112345688999995   4444 33222       2246


Q ss_pred             EEEEeCCc--e--EEE-EEE-eC---CCCcceeEEEEccCCcEEEEEcC
Q psy11518         79 AIFRVGSW--Q--LEK-LFK-KA---HKGTAVNHISIHPSGKLALSVGK  118 (139)
Q Consensus        79 ~~~d~~~~--~--~~~-~~~-~~---~~~~~v~~~~~~~~~~~l~~~~~  118 (139)
                      ..++....  .  ... .+. ..   ........++|.|+|.++++.++
T Consensus       101 ~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd  149 (353)
T 2g8s_A          101 GYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE  149 (353)
T ss_dssp             EEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred             EEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence            66666432  1  111 111 11   11111467999999987776544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=85.49  E-value=6  Score=26.16  Aligned_cols=76  Identities=14%  Similarity=0.102  Sum_probs=47.4

Q ss_pred             CCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeC----CCCcceeEEEEccC----CcEEEEE--cCCCeEE
Q psy11518         54 EGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA----HKGTAVNHISIHPS----GKLALSV--GKDKTLR  123 (139)
Q Consensus        54 ~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~~~v~~~~~~~~----~~~l~~~--~~d~~i~  123 (139)
                      -.....++|.|+++++++--..|.|..++...+.........    ........++++|+    +.+.++-  ..++.|.
T Consensus        31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~  110 (347)
T 3das_A           31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV  110 (347)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred             CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence            345689999999998877766899998886555543222111    11223789999995    4444432  2445566


Q ss_pred             EEEcCC
Q psy11518        124 TWNLVK  129 (139)
Q Consensus       124 i~d~~~  129 (139)
                      -|.+..
T Consensus       111 R~~~~~  116 (347)
T 3das_A          111 RMLYDE  116 (347)
T ss_dssp             EEEBCT
T ss_pred             EEEeCC
Confidence            666554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=83.87  E-value=8.5  Score=26.53  Aligned_cols=101  Identities=13%  Similarity=0.125  Sum_probs=53.4

Q ss_pred             EEecCCc-EEEEeCCCCeEEEEEccCCc---eeeEEE-----e----cCCCeEEEEECCC----CCEEEEecC--C----
Q psy11518         19 SVAATSK-LAASSGADETVVLYDMVKRK---QSGALM-----Q----HEGTITCLKFTPE----GSHLISCSD--D----   75 (139)
Q Consensus        19 ~~~~~~~-~l~~~~~~~~v~i~~~~~~~---~~~~~~-----~----~~~~v~~~~~~~~----~~~l~~~~~--d----   75 (139)
                      .+.+++. .++++...|.|++++.....   .+..+.     +    .......++|+|+    +.+.++-+.  +    
T Consensus        20 a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~~~~   99 (463)
T 2wg3_C           20 LHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQERWAI   99 (463)
T ss_dssp             ECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCSSCS
T ss_pred             EECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCCccc
Confidence            3334774 34455667999999754321   222211     1    1356788999996    333333221  1    


Q ss_pred             ------CcEEEEEeCC----------ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC
Q psy11518         76 ------GSIAIFRVGS----------WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD  119 (139)
Q Consensus        76 ------~~i~~~d~~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  119 (139)
                            ..|.-|.+..          .+.+..+........-..|.|.|||.++++.++.
T Consensus       100 ~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~  159 (463)
T 2wg3_C          100 GPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG  159 (463)
T ss_dssp             SSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred             CCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence                  1343455432          1233333222222236789999999988877654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=82.59  E-value=1.5  Score=33.71  Aligned_cols=36  Identities=14%  Similarity=0.122  Sum_probs=29.2

Q ss_pred             EEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE
Q psy11518         58 TCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK   93 (139)
Q Consensus        58 ~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~   93 (139)
                      .+++..++..++++-+.|+++++|++.+++++....
T Consensus       241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             SCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             EEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            444555677899999999999999999998877653

>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*

Probab=80.30  E-value=13  Score=26.27  Aligned_cols=69  Identities=9%  Similarity=0.078  Sum_probs=43.3

Q ss_pred             CeEEEEECC--CCCEEEEecCCCcEEEEEeCCc----eEEEEEEeCCCCccee-EEEEccCCcEEEEEcCCCeEEE
Q psy11518         56 TITCLKFTP--EGSHLISCSDDGSIAIFRVGSW----QLEKLFKKAHKGTAVN-HISIHPSGKLALSVGKDKTLRT  124 (139)
Q Consensus        56 ~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i  124 (139)
                      ..++++...  +...+..|..+|.|.-..+...    .....+.....+.+|. .+.+++++..|++++.++.++|
T Consensus       401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv  476 (539)
T 3al9_A          401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMVSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV  476 (539)
T ss_dssp             CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEEECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred             ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEEEeecCCCccccceEEccCCCeEEEEecccccee
Confidence            456665544  3345678888998765444322    2333443333344574 8999999999999988765554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-11
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-11
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-10
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	8e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	6e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.001

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.8 bits (177), Expect = 1e-16
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 13  HTASVRSVA--ATSKLAASSGADETVVL--YDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
           H + + ++         A+   D T  L      +   + +       IT + F+  G  
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284

Query: 69  LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
           L++  DD +  ++         +    H    V+ + +   G    +   D  L+ WN
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVL-AGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.1 bits (175), Expect = 2e-16
 Identities = 24/107 (22%), Positives = 44/107 (41%)

Query: 25  KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVG 84
           +L  S   D +  L+D+ +         HE  I  + F P G+   + SDD +  +F + 
Sbjct: 197 RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLR 256

Query: 85  SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
           + Q    +   +    +  +S   SG+L L+   D     W+ +K  
Sbjct: 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.1 bits (136), Expect = 3e-11
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 11  HSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH 68
            +    + SV+   + +L  +   D    ++D +K  ++G L  H+  ++CL  T +G  
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMA 326

Query: 69  LISCSDDGSIAIF 81
           + + S D  + I+
Sbjct: 327 VATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.4 bits (98), Expect = 4e-06
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 5/111 (4%)

Query: 17  VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG 76
            R   A + L+  +   + V    M  R+    L  H   I  + +  +   L+S S DG
Sbjct: 21  ARKACADATLSQITNNIDPVGRIQMRTRRT---LRGHLAKIYAMHWGTDSRLLVSASQDG 77

Query: 77  SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
            + I+   +           + + V   +  PSG      G D     +NL
Sbjct: 78  KLIIWDSYTTNKVHAIP--LRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.1 bits (175), Expect = 2e-16
 Identities = 20/121 (16%), Positives = 53/121 (43%), Gaps = 2/121 (1%)

Query: 5   TQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTP 64
           + + ++ +  +  +          S   D+T+ ++D+        L+ H+  +  + F  
Sbjct: 198 SYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS 257

Query: 65  EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRT 124
            G  ++SC+DD ++ ++   + +  K    AH+   V  +  H +    ++   D+T++ 
Sbjct: 258 GGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEH-FVTSLDFHKTAPYVVTGSVDQTVKV 315

Query: 125 W 125
           W
Sbjct: 316 W 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 6e-11
 Identities = 16/79 (20%), Positives = 33/79 (41%)

Query: 3   TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKF 62
               T V H +        +  K   S   D+T+ ++D   ++    L  HE  +T L F
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

Query: 63  TPEGSHLISCSDDGSIAIF 81
                ++++ S D ++ ++
Sbjct: 298 HKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (123), Expect = 2e-09
 Identities = 35/146 (23%), Positives = 54/146 (36%), Gaps = 22/146 (15%)

Query: 6   QTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPE 65
           +TF  H     +        L AS   D+TV ++ +  ++    L +H   + C+ + PE
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 66  --------------------GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS 105
                               G  L+S S D +I ++ V +          H    V  + 
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDN-WVRGVL 254

Query: 106 IHPSGKLALSVGKDKTLRTWNLVKGR 131
            H  GK  LS   DKTLR W+    R
Sbjct: 255 FHSGGKFILSCADDKTLRVWDYKNKR 280

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 8e-07
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 53  HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP 108
           H   +T + F P  S ++S S+D +I ++   +   E+   K H   +V  IS   
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTL-KGHTD-SVQDISFDH 69

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.7 bits (96), Expect = 8e-06
 Identities = 26/124 (20%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 6   QTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
           + +    H + V  V       +  S+  D T+ ++D         L  H  ++  + F 
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD 68

Query: 64  PEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLR 123
             G  L SCS D +I ++    ++  +           + +SI P+G   +S  +DKT++
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNV--SSVSIMPNGDHIVSASRDKTIK 126

Query: 124 TWNL 127
            W +
Sbjct: 127 MWEV 130

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.3 bits (95), Expect = 1e-05
 Identities = 19/127 (14%), Positives = 47/127 (37%), Gaps = 18/127 (14%)

Query: 23  TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR 82
                 S+  D+T+ ++++           H   +  ++   +G+ + SCS+D ++ ++ 
Sbjct: 112 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 171

Query: 83  VGSWQLEKLFKKAHKG------------------TAVNHISIHPSGKLALSVGKDKTLRT 124
           V + + +   ++                      T          G   LS  +DKT++ 
Sbjct: 172 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 231

Query: 125 WNLVKGR 131
           W++  G 
Sbjct: 232 WDVSTGM 238

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.3 bits (82), Expect = 6e-04
 Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 94  KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
             H+   V  +  HP   + +S  +D T++ W+   G 
Sbjct: 14  SGHRS-PVTRVIFHPVFSVMVSASEDATIKVWDYETGD 50

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.9 bits (151), Expect = 3e-13
 Identities = 22/134 (16%), Positives = 42/134 (31%), Gaps = 20/134 (14%)

Query: 13  HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALM------------QHEGTIT 58
           H  SV SV      +   S   D +V L+++                       H+  + 
Sbjct: 253 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 59  CLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT-----AVNHISIHPSGKLA 113
            +  T    +++S S D  +  +   S     +  + H+ +       N  S+ P   + 
Sbjct: 313 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVF 371

Query: 114 LSVGKDKTLRTWNL 127
            +   D   R W  
Sbjct: 372 ATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (133), Expect = 9e-11
 Identities = 20/121 (16%), Positives = 41/121 (33%), Gaps = 17/121 (14%)

Query: 28  ASSGADETVVLYDMVKRKQSGALMQ-------HEGTITCLKFTPEGSHLISCSDDGSIAI 80
           A+   D  V ++D         L         H+ ++  + FT +G  ++S S D S+ +
Sbjct: 221 AAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKL 280

Query: 81  FRV----------GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
           + +                           V  ++   + +  LS  KD+ +  W+   G
Sbjct: 281 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340

Query: 131 R 131
            
Sbjct: 341 N 341

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 2e-05
 Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 21/120 (17%)

Query: 27  AASSGADETVVLYDMVKRKQSGA----LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR 82
           A     ++  +LY+    ++        + H   + C+KF+ +G +L +  +  +  ++R
Sbjct: 31  ALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYR 89

Query: 83  VGSWQLEKLFKKAHKGT----------------AVNHISIHPSGKLALSVGKDKTLRTWN 126
           V    L                            +  +   P GK   +  +D+ +R W+
Sbjct: 90  VSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWD 149

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 4e-13
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 51  MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
             HE  +  LKF   G   +S   D  +  +R        +F+      +V    I    
Sbjct: 262 HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS--IFQSKESS-SVLSCDISVDD 318

Query: 111 KLALSVGKDKTLRTWNLV 128
           K  ++   DK    + ++
Sbjct: 319 KYIVTGSGDKKATVYEVI 336

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 4e-09
 Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 11  HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
           H         A   K   S+G D  +  +       S    +   ++     + +  +++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKYIV 322

Query: 71  SCSDDGSIAIFRV 83
           + S D    ++ V
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 5e-07
 Identities = 12/111 (10%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 20  VAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIA 79
           V A  ++       + ++   + +  +    + H   +  +  +    H+ +    G + 
Sbjct: 17  VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVK 75

Query: 80  IFRVGSWQ----LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN 126
           ++ +        + +L         +    + P G   +  G+  TL  W+
Sbjct: 76  VWDISHPGNKSPVSQLDCLNRDN-YIRSCKLLPDGCTLIVGGEASTLSIWD 125

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 5e-06
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 10  THSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ-----HEGTITCLKF 62
           T +H   V +V     ++   + G    V ++D+        + Q      +  I   K 
Sbjct: 47  TLNHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105

Query: 63  TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP 108
            P+G  LI   +  +++I+ + +       +      A   ++I P
Sbjct: 106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP 151

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (76), Expect = 0.003
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 51  MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
                 I  L + P G  L    +  ++ +  V        ++     + V  +     G
Sbjct: 221 HDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK---YQLHLHESCVLSLKFAYCG 277

Query: 111 KLALSVGKDKTLRTWNLVKGR 131
           K  +S GKD  L  W    G 
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGA 298

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.5 bits (142), Expect = 5e-12
 Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 57  ITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK-KAHKGTAVNHISIHPSGKLALS 115
           I+C  +  + + +  C ++  + I+     +  ++ + K H G  V  +   P     ++
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDSNRIVT 68

Query: 116 VGKDKTLRTWN 126
            G D+    W 
Sbjct: 69  CGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 52.6 bits (124), Expect = 1e-09
 Identities = 18/123 (14%), Positives = 40/123 (32%), Gaps = 5/123 (4%)

Query: 10  THS-HTASVRSVA--ATSKLAASSGADETVVLYDMV--KRKQSGALMQHEGTITCLKFTP 64
            HS     +   A        A    +  V +Y+    K  Q   L +H G +T + + P
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 65  EGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRT 124
           + + +++C  D +  ++ +     +          A   +   P+ K        + +  
Sbjct: 62  DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI 121

Query: 125 WNL 127
              
Sbjct: 122 CYF 124

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 2e-04
 Identities = 15/91 (16%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 7   TFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEG 66
           +F          S    +        D+            +G    H+ +++ +     G
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAA-AGAGLDSLHKNSVSQISVLSGG 337

Query: 67  ----SHLISCSDDGSIAIFRVGSWQLEKLFK 93
               S   +   DG ++I+ V S  LE   K
Sbjct: 338 KAKCSQFCTTGMDGGMSIWDVRS--LESALK 366

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.6 bits (80), Expect = 0.001
 Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 7/103 (6%)

Query: 29  SSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL 88
           ++G D   VL+         +                 +     + D   +    GS   
Sbjct: 259 AAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--EGSAAA 316

Query: 89  EKLFKKAHKGTAVNHISIHPSGKLAL----SVGKDKTLRTWNL 127
                  HK + V+ IS+   GK       + G D  +  W++
Sbjct: 317 GAGLDSLHKNS-VSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 3e-11
 Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 2/121 (1%)

Query: 13  HTASVRS-VAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLIS 71
           H  SV + +        +   D+ + +YD + +K    L  H+G +  LK+   G  L+S
Sbjct: 11  HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVS 69

Query: 72  CSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
            S D ++ ++ +       +F+  +       I  + + K  ++  +D TL  W L K  
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 132 S 132
           S
Sbjct: 130 S 130

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 9e-06
 Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 2/77 (2%)

Query: 51  MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
             H   ++ +       +++    +    I+ + S +L            +  ++     
Sbjct: 278 SYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD-QIWSVNFKGKT 336

Query: 111 KLALSVGKDKTLRTWNL 127
            +A +V KD       L
Sbjct: 337 LVA-AVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 4e-04
 Identities = 10/71 (14%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 11  HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGA-LMQHEGTITCLKFTPEGSHL 69
           H++ +++ +   +  +  S G++    +Y++   K   A +++    I  + F  +   +
Sbjct: 281 HTNLSAITTFYVSDNILVS-GSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 338

Query: 70  ISCSDDGSIAI 80
            +   DG   +
Sbjct: 339 AAVEKDGQSFL 349

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.5 bits (129), Expect = 3e-10
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 39  YDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG 98
              V    S   + H G++  L ++P+G+ + S S D +I I+ V + ++EK        
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI-PVGTR 281

Query: 99  TAVNHISIHPSGKLALSVGKDKTLRTWNL 127
                + I  + +  +S+  +  +   N 
Sbjct: 282 IEDQQLGIIWTKQALVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 3e-07
 Identities = 8/49 (16%), Positives = 16/49 (32%)

Query: 30 SGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSI 78
               +V    +     +    +H    T  K +P G +  S    G++
Sbjct: 34 YCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNV 82

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.9 bits (104), Expect = 7e-07
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 55  GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLAL 114
           GT   L  TP G  +  C+   S+    VGS    +++   H           PSG    
Sbjct: 18  GTAVVLGNTPAGDKIQYCNGT-SVYTVPVGSLTDTEIYT-EHSH-QTTVAKTSPSGYYCA 74

Query: 115 SVGKDKTLRTWN 126
           S      +R W+
Sbjct: 75  SGDVHGNVRIWD 86

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.0 bits (94), Expect = 1e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 24  SKLAASSGADETVVLYDMVKRKQSGALMQHEG-TITCLKFTPEGSHLISCSDDGSIAIF 81
               AS+ AD+T+ ++++   K    +          L        L+S S +G I   
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.1 bits (120), Expect = 4e-09
 Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 53  HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
           H   IT L  + +G  L S   +G I  + + +    ++F   H    +  I     G L
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHAT-MITGIKTTSKGDL 69

Query: 113 ALSVGKDKTLRTWNL 127
             +V  D  L+    
Sbjct: 70  F-TVSWDDHLKVVPA 83

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 5e-07
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 51  MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK-LFKKAHKGTAVNHISIHPS 109
             H   + C+ ++P+   L + S D S+ ++ +        + K AH  ++VN +     
Sbjct: 221 TFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE 280

Query: 110 GKLALSVGKDKTLRTWNL 127
             +  S G+D  ++ WN+
Sbjct: 281 TTIV-SAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.7 bits (85), Expect = 2e-04
 Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 3  TLTQTFVTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ-HEGTITC 59
          ++ Q    + H  ++ +++  A  K   S+ A+  +  +D+     +      H   IT 
Sbjct: 3  SIDQVR--YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 60

Query: 60 LKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAH 96
          +K T +   L + S D  + +   G   ++     A+
Sbjct: 61 IKTTSK-GDLFTVSWDDHLKVVPAGGSGVDSSKAVAN 96

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 8e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)

Query: 96  HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS 132
           H   A+  +S    GK   S   +  + +W++  G S
Sbjct: 11  HNK-AITALSSSADGKTLFSADAEGHINSWDISTGIS 46

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (117), Expect = 1e-08
 Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 3/92 (3%)

Query: 38  LYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHK 97
            +     + +         +  ++F+P    L +   DG I+ + + + +  K F K ++
Sbjct: 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE 294

Query: 98  GTAVNHISIHPSGKLALSVGKDKTLRTWNLVK 129
            + V    I  S  +      D T +T   + 
Sbjct: 295 DSVV---KIACSDNILCLATSDDTFKTNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 2e-08
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 53  HEGTITCLKFTPEGSHLISCSDDGSIAIFRV--GSWQLEKLFKKAHKGTAVNHISIHPSG 110
            +  I+ +K  P  S L+  S DGS+ +++    +  ++ L    +K   +   +   + 
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-PLLCCNFIDNT 68

Query: 111 KLALSVG 117
            L + VG
Sbjct: 69  DLQIYVG 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 1e-06
 Identities = 8/72 (11%), Positives = 24/72 (33%), Gaps = 5/72 (6%)

Query: 9  VTHSHTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALMQ---HEGTITCLKFT 63
          +  +    +  +    +  L   +  D ++ +Y    + ++  L+Q   ++  + C  F 
Sbjct: 6  IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 64 PEGSHLISCSDD 75
                I     
Sbjct: 66 DNTDLQIYVGTV 77

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 0.002
 Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 94  KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
           +A K   ++ I I PS  L L    D +L  +      
Sbjct: 8   QAPKDY-ISDIKIIPSKSLLLITSWDGSLTVYKFDIQA 44

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 3e-08
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 51  MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
                     +   E   + + S D +I I+ V           AHK   VN++      
Sbjct: 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPS 270

Query: 111 KLALSVGKDKTLRTWNLV 128
            L  S G D  ++ WN+V
Sbjct: 271 TLV-SSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (81), Expect = 6e-04
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 11/61 (18%)

Query: 53  HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL 112
           H   IT L   P    LIS S DG I       W    +  + H    +  +    + + 
Sbjct: 12  HNKGITALTVNP----LISGSYDGRIME-----WSSSSMH-QDHSN-LIVSLDNSKAQEY 60

Query: 113 A 113
           +
Sbjct: 61  S 61

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 4e-08
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 8/127 (6%)

Query: 9   VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQ-SGALMQHEGTITCLKFTPEGS 67
               H +    +     +  S  AD TV ++D+   +        ++            +
Sbjct: 212 TLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKN 271

Query: 68  HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT---AVNHISIHPSGKLALSVGKDKT--- 121
            +I+ SDDG++ ++ + + +  +       G     V  I    +  +     ++ T   
Sbjct: 272 FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331

Query: 122 -LRTWNL 127
            L   + 
Sbjct: 332 KLLVLDF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 4e-07
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 3/121 (2%)

Query: 11  HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
             HT  V S+        S   D ++ ++D+        L  H+   + ++     + L+
Sbjct: 174 QGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILV 231

Query: 71  SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
           S + D ++ I+ + + Q  +  +  +K        +  +    ++   D T++ W+L  G
Sbjct: 232 SGNADSTVKIWDIKTGQCLQTLQGPNKHQ-SAVTCLQFNKNFVITSSDDGTVKLWDLKTG 290

Query: 131 R 131
            
Sbjct: 291 E 291

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-06
 Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 6/120 (5%)

Query: 8   FVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGS 67
            V   H A+VR V    +   S   D  V ++D         L  H  T        +G 
Sbjct: 131 HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH--TNRVYSLQFDGI 188

Query: 68  HLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL 127
           H++S S D SI ++ V +            G       +     + +S   D T++ W++
Sbjct: 189 HVVSGSLDTSIRVWDVETGNC----IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDI 244

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 5e-05
 Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 2   YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDM-----VKRKQSGALMQHEGT 56
             L      + H ++V  +        +S  D TV L+D+     ++   +       G 
Sbjct: 248 QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307

Query: 57  ITCLKFTPEGSHLISCSDDGSIAIF 81
           +  ++ +         S +G+    
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETK 332

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 8e-05
 Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 1/71 (1%)

Query: 3  TLTQTFVTHSHTASVRSVAATS-KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLK 61
           L    V   H   V +          S   D T+ ++  V  K    L+ H G +   +
Sbjct: 5  ELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64

Query: 62 FTPEGSHLISC 72
                   S 
Sbjct: 65 MRDNIIISGST 75

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 50  LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPS 109
           L  H+  +        G+ ++S SDD ++ ++   + +  +     H G  V    +  +
Sbjct: 12  LKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL-VGHTG-GVWSSQMRDN 68

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 7e-04
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 82  RVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR 131
           R G  +  K+ K  H    +    +   G   +S   D TL+ W+ V G+
Sbjct: 2   RRGELKSPKVLK-GHDDHVIT--CLQFCGNRIVSGSDDNTLKVWSAVTGK 48

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.9 bits (112), Expect = 6e-08
 Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
            Y +     +     SV      +     +     ++ YD+  RK    + + +  +T L
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK----VTEVKNNLTDL 320

Query: 61  KFTPEGSHLISCSDDGSIAIFRVGSWQLEK 90
           + + +   ++   DDG I  F +   + E+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.4 bits (108), Expect = 2e-07
 Identities = 10/120 (8%), Positives = 31/120 (25%), Gaps = 6/120 (5%)

Query: 11  HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI 70
                   +  A            + +  D    +    L       +        ++  
Sbjct: 233 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQ 292

Query: 71  SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG 130
              + G +  + V + ++ ++         +  + +    K  +    D  + T+ L K 
Sbjct: 293 GAPEKGVLLKYDVKTRKVTEVKN------NLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 2e-07
 Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 13/138 (9%)

Query: 1   KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ------HE 54
           K  +       +H A + SV+A +    S   D  + ++D           +      H+
Sbjct: 1   KVFIATANAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHK 60

Query: 55  GTITCLKF-------TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIH 107
             +  +           E   + + S  G +  +R+      K           + +  H
Sbjct: 61  SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120

Query: 108 PSGKLALSVGKDKTLRTW 125
               L      D+ L   
Sbjct: 121 SFWALKWGASNDRLLSHR 138

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 6e-06
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 13/90 (14%)

Query: 53  HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTA----VNHISI-- 106
           H+  I  +      S  +SCS DG + ++       E    K++        ++H+ +  
Sbjct: 13  HDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 107 -----HPSGKLALSVGKDKTLRTWNLVKGR 131
                     L  +      L  + + +  
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRITRED 100

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 2e-06
 Identities = 9/78 (11%), Positives = 26/78 (33%), Gaps = 1/78 (1%)

Query: 51  MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSG 110
            +            +     +   D +I ++ V + +  + +    +      + +  +G
Sbjct: 248 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG 307

Query: 111 -KLALSVGKDKTLRTWNL 127
               +S+  D TL  + L
Sbjct: 308 NGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 4e-05
 Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 4/80 (5%)

Query: 55  GTITCLKFTPEGSHLISCS-DDGSIAIFRVGSWQLEKLFK-KAHKGTAVNHISIHP--SG 110
              T L + P  + +         +     G  ++  + +   H  + V  +   P    
Sbjct: 18  NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGS 77

Query: 111 KLALSVGKDKTLRTWNLVKG 130
           +   S  +   +  W     
Sbjct: 78  QYLCSGDESGKVIVWGWTFD 97

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 2e-04
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 24  SKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEG-SHLISCSDDGSIAI 80
           S+  A+ GAD T+ ++D+   K  Q   L + +     +     G   +IS S DG++  
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 81  FRV 83
           + +
Sbjct: 323 YEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.5 bits (77), Expect = 0.002
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 16/126 (12%)

Query: 1   KYTLTQTF-----VTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALM---Q 52
             +L +          + T  +     T+ +A   G    V   D    K    +     
Sbjct: 2   SISLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGH 61

Query: 53  HEGTITCLKFTPE--GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT------AVNHI 104
               +T +KF+P     +L S  + G + ++     +     +   K         ++ I
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 105 SIHPSG 110
           S    G
Sbjct: 122 SWDFEG 127

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-05
 Identities = 19/129 (14%), Positives = 42/129 (32%), Gaps = 7/129 (5%)

Query: 3   TLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKF 62
           T       + H   +  +    +L  S  +D T+ L+D+     +   +           
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDI--ECGACLRVLEGHEELVRCI 224

Query: 63  TPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHK-GTAVNH----ISIHPSGKLALSVG 117
             +   ++S + DG I ++ + +    +         T V H      +       +S  
Sbjct: 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSS 284

Query: 118 KDKTLRTWN 126
            D T+  W+
Sbjct: 285 HDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-05
 Identities = 11/62 (17%), Positives = 26/62 (41%)

Query: 1  KYTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCL 60
          +++L +       +  V  +    +   S   D T+ ++D    +    L  H G++ CL
Sbjct: 2  RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL 61

Query: 61 KF 62
          ++
Sbjct: 62 QY 63

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 6e-04
 Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 52 QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG 98
          +    + CL++  +   ++S   D +I I+   + + +++    H G
Sbjct: 13 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTG 56

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 37.4 bits (85), Expect = 3e-04
 Identities = 14/123 (11%), Positives = 32/123 (26%), Gaps = 5/123 (4%)

Query: 10  THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALM-QHEGTITCLKFTPEGSH 68
             S   ++       +  A++      +  D+   K                  +P+  +
Sbjct: 206 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPN 265

Query: 69  LISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV 128
            I    +  +A + +   +L K     H       ++    G      G    L  +N  
Sbjct: 266 QIYGVLN-RLAKYDLKQRKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

Query: 129 KGR 131
              
Sbjct: 322 TLE 324

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 5   TQTFVTHSHTASVRSVAATSKLA-ASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT 63
           T T      T    +   + K      G    +  YD+ +RK   A    + T  C+ F 
Sbjct: 242 THTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAA-NLDHTYYCVAFD 300

Query: 64  PEGSHLISCSDDGSIAIFRVGSWQLEKLFK 93
            +G  L        +A+F   + +  K  K
Sbjct: 301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 5e-04
 Identities = 10/84 (11%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 10  THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL 69
                    S A       + GA   +  +D +++  S   +    +   +  + +GS +
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAFGAYNVLESFD-LEKNASIKRVPLPHSYYSVNVSTDGSTV 294

Query: 70  ISCSDDGSIAIFRVGSWQLEKLFK 93
                 G +A +   + + +    
Sbjct: 295 WLGGALGDLAAYDAETLEKKGQVD 318

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 35.6 bits (80), Expect = 0.001
 Identities = 7/62 (11%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 70  ISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-LALSVGKDKTLRTWNLV 128
           I+  +   I ++ +       L +       V  + + P  + L + V  +  +  + + 
Sbjct: 8   IASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67

Query: 129 KG 130
             
Sbjct: 68  PD 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.93
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.9
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.9
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.9
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.9
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.89
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.89
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.88
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.87
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.87
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.86
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.85
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.84
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.84
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.82
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.82
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.82
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.77
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.77
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.77
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.76
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.74
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.72
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.66
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.64
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.63
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.61
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.59
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.58
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.54
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.52
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.49
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.47
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.38
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.37
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.25
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.18
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.16
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.15
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.14
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.94
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.82
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.76
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.69
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.51
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.31
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.24
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.22
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.13
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.08
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.05
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.02
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	97.94
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.87
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.78
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.74
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	97.7
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.66
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.58
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.43
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.42
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	97.36
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.29
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.24
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.22
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.89
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.86
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.8
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.75
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.57
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.42
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.33
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.22
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	95.45
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.01
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	94.96
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.01
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.14
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	92.68
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	90.86
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	90.12
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	89.96
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	89.67
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	89.66
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	89.65
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.76

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.9e-25  Score=145.96  Aligned_cols=121  Identities=24%  Similarity=0.298  Sum_probs=101.8

Q ss_pred             eEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEE------EecCCCeEEEEECCCCCEEEEecCCCc---EEEEEeCC
Q psy11518         16 SVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGAL------MQHEGTITCLKFTPEGSHLISCSDDGS---IAIFRVGS   85 (139)
Q Consensus        16 ~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~d~~---i~~~d~~~   85 (139)
                      .++++.+ ...++++|+.|+.|++||+.+++++..+      .+|...|.+++|+|++++|++|+.|+.   |++||+++
T Consensus       186 ~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~  265 (393)
T d1sq9a_         186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF  265 (393)
T ss_dssp             CCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             cEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccccc
Confidence            3555665 3348999999999999999998876554      468899999999999999999998874   89999999


Q ss_pred             ceEEEEEEe------------CCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         86 WQLEKLFKK------------AHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        86 ~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++.+..+..            .|... |++++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus       266 g~~~~~l~~~~~~~~~~~~~~gH~~~-V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~  328 (393)
T d1sq9a_         266 GERIGSLSVPTHSSQASLGEFAHSSW-VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  328 (393)
T ss_dssp             CCEEEEECBC--------CCBSBSSC-EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ceeeeeeccccccccceeeeecccCc-eeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEEC
Confidence            887776631            35554 9999999999999999999999999999999887764

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=1.5e-24  Score=138.89  Aligned_cols=126  Identities=21%  Similarity=0.362  Sum_probs=110.0

Q ss_pred             ecceeeEEEEec--CCc-EEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         11 HSHTASVRSVAA--TSK-LAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~-~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      .+|...|.++.|  +++ .+++|+.|+.|++||+++++....+..|...|.++.|+|+++++++++.|+.+++||..++.
T Consensus       143 ~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~  222 (311)
T d1nr0a1         143 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGT  222 (311)
T ss_dssp             CCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             cccccccccccccccceeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccc
Confidence            356677777776  666 58889999999999999999999999999999999999999999999999999999999988


Q ss_pred             EEEEEEeC------CCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         88 LEKLFKKA------HKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        88 ~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ....+...      |.. .|.+++|+|++++|++|+.||.|++||+++++.+..+.
T Consensus       223 ~~~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~  277 (311)
T d1nr0a1         223 KTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIP  277 (311)
T ss_dssp             EEEECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEE
Confidence            77766432      333 49999999999999999999999999999999887664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=1.9e-24  Score=141.12  Aligned_cols=118  Identities=14%  Similarity=0.233  Sum_probs=101.3

Q ss_pred             eeEEEEec--CCcEEEEeCCCCeEEEEEccCCc--eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         15 ASVRSVAA--TSKLAASSGADETVVLYDMVKRK--QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        15 ~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      .+|.|++|  ++++|++|+.|+.|++||..+++  .+..+.+|...|.+++|+|++++|++++.|+.|++||+.++....
T Consensus         8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~   87 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   87 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccc
Confidence            45666665  99999999999999999998775  567788999999999999999999999999999999999887666


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      .+........|.+++|+|+++.+++++.|+.+++|++.....
T Consensus        88 ~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~  129 (371)
T d1k8kc_          88 TLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND  129 (371)
T ss_dssp             EEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTT
T ss_pred             ccccccccccccccccccccccceeecccCcceeeeeecccc
Confidence            554444444599999999999999999999999999876654

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-23  Score=134.92  Aligned_cols=125  Identities=20%  Similarity=0.299  Sum_probs=105.1

Q ss_pred             Eeecceee-EEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518          9 VTHSHTAS-VRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus         9 ~~~~~~~~-v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      ...||... +.|++|++++|++|+.|++|++||+.+++.+.++.+|.+.|.+++|+|+ .+|++++.|+.|++|+.....
T Consensus         7 tL~GH~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~   85 (355)
T d1nexb2           7 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGC   85 (355)
T ss_dssp             EEECCSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTE
T ss_pred             EECCcCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEecccccccccccccc
Confidence            34578766 4788999999999999999999999999999999999999999999985 589999999999999999988


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  134 (139)
                      ..................+.++++.+++++.|+.|++||+++...+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~  132 (355)
T d1nexb2          86 CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP  132 (355)
T ss_dssp             EEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----
T ss_pred             cccccccccccccccccccccccceeeeecCCCcEEEEEccCCceec
Confidence            87776555554446667788999999999999999999998876543

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.6e-23  Score=133.82  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=100.8

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE--ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM--QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      .+|...|.++++  ++++|++|+.|+.|++|++.....+..+.  .+...+.+++|+|+++++++|+.||.|++||+.++
T Consensus       223 ~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~  302 (340)
T d1tbga_         223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA  302 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC
T ss_pred             eCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC
Confidence            357777777776  89999999999999999999888776654  45677999999999999999999999999999999


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      +.+..+ ..|... |.+++|+|++++|++|+.||.|++||
T Consensus       303 ~~~~~~-~~H~~~-V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         303 DRAGVL-AGHDNR-VSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEE-CCCSSC-EEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cEEEEE-cCCCCC-EEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            998888 556655 99999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.2e-22  Score=129.69  Aligned_cols=116  Identities=22%  Similarity=0.328  Sum_probs=106.1

Q ss_pred             cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         22 ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        22 ~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                      +.+.++++++.|+.|++||+.+++++..+.+|...|.+++|+|+++++++++.|+.|++||++.......+.......++
T Consensus       194 ~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i  273 (340)
T d1tbga_         194 PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI  273 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred             cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCce
Confidence            38889999999999999999999999999999999999999999999999999999999999998888777555555569


Q ss_pred             eEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518        102 NHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .+++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus       274 ~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  309 (340)
T d1tbga_         274 TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA  309 (340)
T ss_dssp             EEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEc
Confidence            999999999999999999999999999998887653

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.90  E-value=3.5e-22  Score=127.82  Aligned_cols=127  Identities=24%  Similarity=0.374  Sum_probs=109.1

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCC--CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCE-EEEecCCCcEEEEEe
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGA--DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH-LISCSDDGSIAIFRV   83 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~--~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~   83 (139)
                      ...+|..+|.++.|  +++++++++.  +..+++|+.++++....+.+|...|.+++|+|++++ +++|+.|+.|++||+
T Consensus        97 ~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~  176 (311)
T d1nr0a1          97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG  176 (311)
T ss_dssp             EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET
T ss_pred             ccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeecccccccccccccc
Confidence            34567778888887  7888888875  456999999999999999999999999999998875 788999999999999


Q ss_pred             CCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         84 GSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ++++....+ ..|... |.+++|+|+++++++++.|+.+++||+++++.+..+.
T Consensus       177 ~~~~~~~~~-~~~~~~-i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         177 PPFKFKSTF-GEHTKF-VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             TTBEEEEEE-CCCSSC-EEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECB
T ss_pred             ccccccccc-cccccc-ccccccCcccccccccccccccccccccccccccccc
Confidence            999887777 455544 9999999999999999999999999999988776543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.9e-22  Score=129.08  Aligned_cols=129  Identities=17%  Similarity=0.282  Sum_probs=100.9

Q ss_pred             EEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCce---eeE--EEecCCCeEEEEECCCCCEEEEecCCCcEE
Q psy11518          7 TFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQ---SGA--LMQHEGTITCLKFTPEGSHLISCSDDGSIA   79 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~---~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~   79 (139)
                      .+..-+|...|.+++|  ++++|++|+ |+.|++||+.+...   +..  ..+|.+.|.+++|+|++++|++++.|+.|+
T Consensus        44 ~~~~~~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~  122 (337)
T d1gxra_          44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS  122 (337)
T ss_dssp             EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred             EEEECCCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccc
Confidence            3344467888888877  899999997 89999999976532   222  336888999999999999999999999999


Q ss_pred             EEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         80 IFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +||+.............+...+..++|+|++.++++++.|+.+.+||+++++.....
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~  179 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999876543332222333334899999999999999999999999999988776543

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.5e-23  Score=130.08  Aligned_cols=102  Identities=20%  Similarity=0.402  Sum_probs=94.4

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCccee
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVN  102 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~  102 (139)
                      .+..+++++.|+.|++||..+++++..+.+|...|.+++|+|++++|++++.||.|++||+++++.+..+ ..|... |.
T Consensus       216 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~-V~  293 (317)
T d1vyhc1         216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL-NAHEHF-VT  293 (317)
T ss_dssp             -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEE-ECCSSC-EE
T ss_pred             CCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEE-cCCCCC-EE
Confidence            3567999999999999999999999999999999999999999999999999999999999999988887 556655 99


Q ss_pred             EEEEccCCcEEEEEcCCCeEEEEE
Q psy11518        103 HISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus       103 ~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      +++|+|++++|++|+.||.|++||
T Consensus       294 ~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         294 SLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=6.3e-22  Score=129.08  Aligned_cols=122  Identities=18%  Similarity=0.217  Sum_probs=100.3

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCcee--eEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEe
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQS--GALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRV   83 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~   83 (139)
                      ....+|..+|.++.|  ++++|++++.|+.|++||+.++...  ..+.+|...|.+++|+|+++.+++++.|+.+++|++
T Consensus        45 ~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~  124 (371)
T d1k8kc_          45 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF  124 (371)
T ss_dssp             EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred             EEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeee
Confidence            344578888888876  8999999999999999999877543  445678889999999999999999999999999998


Q ss_pred             CCceEE---EEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         84 GSWQLE---KLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        84 ~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ......   ......+... |.+++|+|++++|++++.|+.+++||+...
T Consensus       125 ~~~~~~~~~~~~~~~~~~~-v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         125 EQENDWWVCKHIKKPIRST-VLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             ETTTTEEEEEEECTTCCSC-EEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             ecccccccccccccccccc-cccccccccccceeccccCcEEEEEeeccC
Confidence            665432   2222334444 999999999999999999999999998754

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=6.2e-22  Score=124.77  Aligned_cols=127  Identities=23%  Similarity=0.404  Sum_probs=113.6

Q ss_pred             EeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518          9 VTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus         9 ~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ...+|...|.++.|  ++++|++|+.|+.|++||+.+++.+.++.+|...|.+++|+|++.+++++..++.+..|+....
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF   91 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccccc
Confidence            34589999999887  8999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .....+ ..+... +.++.|+|+++.+++++.|+.+.+||+++++.+..+.
T Consensus        92 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  140 (317)
T d1vyhc1          92 ECIRTM-HGHDHN-VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT  140 (317)
T ss_dssp             CEEECC-CCCSSC-EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cccccc-cccccc-ceeeeccCCCceEEeeccCcceeEeecccceeeeEEc
Confidence            776665 444444 8999999999999999999999999999998876653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.3e-21  Score=124.07  Aligned_cols=129  Identities=22%  Similarity=0.387  Sum_probs=111.1

Q ss_pred             EEEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCC--ceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518          7 TFVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKR--KQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus         7 ~~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      .....+|...|.+++|  ++++|++|+.|+.|++||+...  +....+..|...+.++.|+|++.++++++.++.+.+|+
T Consensus        90 ~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~  169 (337)
T d1gxra_          90 QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD  169 (337)
T ss_dssp             EEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444567778888887  8999999999999999998754  45567788999999999999999999999999999999


Q ss_pred             eCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         83 VGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +.+++..... ..+... +.+++|++++..+++++.|+.+++||+++++.+..+.
T Consensus       170 ~~~~~~~~~~-~~~~~~-v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~  222 (337)
T d1gxra_         170 LHNQTLVRQF-QGHTDG-ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD  222 (337)
T ss_dssp             TTTTEEEEEE-CCCSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             cccccccccc-cccccc-cccccccccccccccccccccccccccccceeecccc
Confidence            9998887766 455554 9999999999999999999999999999998876654

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3.6e-22  Score=130.05  Aligned_cols=115  Identities=18%  Similarity=0.262  Sum_probs=96.4

Q ss_pred             cceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCc------------eeeEEEecCCCeEEEEECCCCCEEEEecCCCc
Q psy11518         12 SHTASVRSVAA--TSKLAASSGADETVVLYDMVKRK------------QSGALMQHEGTITCLKFTPEGSHLISCSDDGS   77 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~   77 (139)
                      +|...|.++.+  ++++|++++.|+.|++||+.++.            .......|...|.+++|+|++++|++|+.||.
T Consensus       252 ~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~  331 (388)
T d1erja_         252 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG  331 (388)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE
Confidence            46677887776  89999999999999999987543            23445578899999999999999999999999


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEE------EccCCcEEEEEcCCCeEEEEEcC
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHIS------IHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      |++||+++++.+..+ ..|... |.+++      |+|++++|++|+.||.|++||++
T Consensus       332 i~vwd~~~~~~~~~l-~~H~~~-V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         332 VLFWDKKSGNPLLML-QGHRNS-VISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEEETTTCCEEEEE-ECCSSC-EEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEEECCCCcEEEEE-eCCCCC-EEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999998888 566655 88886      46789999999999999999985

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=2.6e-21  Score=125.95  Aligned_cols=123  Identities=22%  Similarity=0.392  Sum_probs=106.2

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEE------------------ecCCCeEEEEECCCCCEEE
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALM------------------QHEGTITCLKFTPEGSHLI   70 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~------------------~~~~~v~~~~~~~~~~~l~   70 (139)
                      .+|...|+|++|  +|++|++|+ |+.|++||+.+++.+..+.                  .|...|.+++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            368888888887  899999987 8999999999887766553                  3566799999999999999


Q ss_pred             EecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518         71 SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus        71 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      +|+.||.|++||...++..... ..|... |.+++|++++..+++++.++.+++||+++.......
T Consensus       138 s~~~dg~v~i~~~~~~~~~~~~-~~h~~~-v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKIVMIL-QGHEQD-IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             EEETTSCEEEEETTTTEEEEEE-CCCSSC-EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eccccccccccccccccccccc-cccccc-ccccccccccccccccccceeeeeeecccccccccc
Confidence            9999999999999999888777 455555 999999999999999999999999999987766543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.88  E-value=1e-21  Score=124.14  Aligned_cols=120  Identities=21%  Similarity=0.370  Sum_probs=95.3

Q ss_pred             EEeecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCcee---eEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEE
Q psy11518          8 FVTHSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQS---GALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFR   82 (139)
Q Consensus         8 ~~~~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d   82 (139)
                      .....|...+.++.+  +++++++++.++.|++||+.++...   ..+.+|...|.+++|+|+++++++|+.|+.|++||
T Consensus       173 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         173 VKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEE
Confidence            344467777888776  8899999999999999999887554   34567899999999999999999999999999999


Q ss_pred             eCCceEEEEE-EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcC
Q psy11518         83 VGSWQLEKLF-KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLV  128 (139)
Q Consensus        83 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  128 (139)
                      ++++...... ...+....+..+.| +++++|++++.|+.|++||+.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         253 MNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            9876543322 23344444666655 567899999999999999984

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.87  E-value=7.8e-21  Score=120.08  Aligned_cols=121  Identities=17%  Similarity=0.251  Sum_probs=99.3

Q ss_pred             ceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceee-EEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         13 HTASVRSVAATSKLAASSGADETVVLYDMVKRKQSG-ALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        13 ~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      +...+.++.++++++++|+.|+.|++||+.+++... ....|...|.+++|+|+++++++++.|+.|++||+.++.....
T Consensus       137 ~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         137 YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            445556666799999999999999999998876543 3457889999999999999999999999999999987765543


Q ss_pred             EE-eCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         92 FK-KAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        92 ~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      .. ...+..+|.+++|+|+++++++|+.|+.|++||+++++..
T Consensus       217 ~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~  259 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH  259 (299)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred             cccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence            31 1222344999999999999999999999999999887543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.8e-20  Score=119.21  Aligned_cols=124  Identities=18%  Similarity=0.268  Sum_probs=102.7

Q ss_pred             eecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEE
Q psy11518         10 THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLE   89 (139)
Q Consensus        10 ~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~   89 (139)
                      ..+|...+..+.+++..+++++.|+.|++||+..++.+..+..|...+.++++++  +++++++.|+.|++||....+..
T Consensus       173 ~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~  250 (342)
T d2ovrb2         173 LQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIKTGQCL  250 (342)
T ss_dssp             ECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETTTCCEE
T ss_pred             EcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCEEEEEeccccccc
Confidence            3466777888888999999999999999999999999999999999999888754  69999999999999999998887


Q ss_pred             EEEEeCCC-CcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         90 KLFKKAHK-GTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        90 ~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ..+..... ...+.+++  ++++++++++.||.|++||+++++.+..+.
T Consensus       251 ~~~~~~~~~~~~~~~~~--~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         251 QTLQGPNKHQSAVTCLQ--FNKNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             EEECSTTSCSSCEEEEE--ECSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccceeeeceeecc--cCCCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence            77732222 22244444  456799999999999999999999887653

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=1.1e-20  Score=121.23  Aligned_cols=126  Identities=20%  Similarity=0.307  Sum_probs=100.5

Q ss_pred             ecceeeEEEEec--CCc-EEEEeCCCCeEEEEEccCCceeeEEE---ecCCCeEEEEECCC-CCEEEEecCCCcEEEEEe
Q psy11518         11 HSHTASVRSVAA--TSK-LAASSGADETVVLYDMVKRKQSGALM---QHEGTITCLKFTPE-GSHLISCSDDGSIAIFRV   83 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~-~l~~~~~~~~v~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~   83 (139)
                      .+|...+.++.|  +++ ++++++.|+.+++||..+.+......   .|...|.+++|+|+ +.++++++.|+.|++||+
T Consensus       156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~  235 (325)
T d1pgua1         156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  235 (325)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             eecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeee
Confidence            457778888776  444 57889999999999998876655543   56778999999996 688999999999999999


Q ss_pred             CCceEEEEEEeCCCCcceeEEEEc---cCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         84 GSWQLEKLFKKAHKGTAVNHISIH---PSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        84 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      ++++....+. .|... +..+.|+   |++++|++++.|+.|+|||+++++.+..+.+
T Consensus       236 ~~~~~~~~l~-~~~~~-v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~  291 (325)
T d1pgua1         236 KSGEFLKYIE-DDQEP-VQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL  291 (325)
T ss_dssp             TTCCEEEECC-BTTBC-CCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccc-ccccc-cccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe
Confidence            9999888873 33332 4434443   6889999999999999999999998877653

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=3.3e-21  Score=121.27  Aligned_cols=113  Identities=20%  Similarity=0.276  Sum_probs=92.0

Q ss_pred             ceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceee-EEEecCCCeEEEEECCC----------CCEEEEecCCCcEE
Q psy11518         13 HTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSG-ALMQHEGTITCLKFTPE----------GSHLISCSDDGSIA   79 (139)
Q Consensus        13 ~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~   79 (139)
                      +...+.+++|  ++.+|++|+.|+.|++||+.+++... .+..|...|.+++|+|.          +.++++|+.|+.|+
T Consensus       161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~  240 (287)
T d1pgua2         161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  240 (287)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             cCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence            4556666665  89999999999999999998887654 35689999999999874          46899999999999


Q ss_pred             EEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEc
Q psy11518         80 IFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  127 (139)
                      +||++++.........|... |.+++|+|++ .+++++.|+.|++||+
T Consensus       241 iw~~~~~~~~~~~~~~h~~~-V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         241 IYSVKRPMKIIKALNAHKDG-VNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEESSCTTCCEEETTSSTTC-EEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EEECCCCCeEEEEeCCCCCC-eEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            99997744333332456655 9999999986 5888999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.7e-20  Score=114.64  Aligned_cols=117  Identities=15%  Similarity=0.333  Sum_probs=99.4

Q ss_pred             ecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEE
Q psy11518         11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        11 ~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~   90 (139)
                      .++...|.|++|++++|++|+.|++|++||+.+++++.++.+|...|.+++|  ++++|++++.|+.+++|++..+....
T Consensus        12 ~~~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~   89 (293)
T d1p22a2          12 SETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN   89 (293)
T ss_dssp             CSSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             CCCCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccc
Confidence            3577889999999999999999999999999999999999999999999987  56799999999999999999988776


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCcee
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSA  133 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~  133 (139)
                      ... ...   .....+.+....++++..++.+.+||+.+....
T Consensus        90 ~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (293)
T d1p22a2          90 TLI-HHC---EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDI  128 (293)
T ss_dssp             EEC-CCC---SCEEEEECCTTEEEEEETTSCEEEEECSSSSCC
T ss_pred             ccc-ccc---cccccccccccceeecccccceeEeeccccccc
Confidence            662 222   233455667778999999999999999876543

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=1.3e-20  Score=120.93  Aligned_cols=116  Identities=13%  Similarity=0.214  Sum_probs=92.4

Q ss_pred             cceeeEEEEec---CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEEC---CCCCEEEEecCCCcEEEEEeCC
Q psy11518         12 SHTASVRSVAA---TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFT---PEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        12 ~~~~~v~~~~~---~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      ++...+.+++|   .+.++++++.|+.|++||+++++.+..+.+|...+..+.|+   |++++|++++.|+.|++||+++
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~  282 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT  282 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTT
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCC
Confidence            45667777776   46899999999999999999999999998888777665555   6889999999999999999999


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccC-CcEEEEEcCCCeEEEEEc
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPS-GKLALSVGKDKTLRTWNL  127 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~i~d~  127 (139)
                      ++.+..+........+..+++.+. +.++++++.||.|++||+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         283 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             CCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            999888744433333444444432 347889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.4e-19  Score=113.93  Aligned_cols=118  Identities=19%  Similarity=0.328  Sum_probs=98.1

Q ss_pred             eecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEe---cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc
Q psy11518         10 THSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQ---HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW   86 (139)
Q Consensus        10 ~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~   86 (139)
                      ..+|...+.++.++++++++++.|+.|++||....+....+..   |...+.++.++  ++++++++.||.|++||++++
T Consensus       213 ~~~~~~~v~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg  290 (342)
T d2ovrb2         213 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG  290 (342)
T ss_dssp             ECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred             ecccccceeEEecCCCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCC
Confidence            3467788889999889999999999999999998888777764   55667777775  569999999999999999999


Q ss_pred             eEEEEEEeCC---CCcceeEEEEccCCcEEEEEcCCCe----EEEEEcCC
Q psy11518         87 QLEKLFKKAH---KGTAVNHISIHPSGKLALSVGKDKT----LRTWNLVK  129 (139)
Q Consensus        87 ~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~----i~i~d~~~  129 (139)
                      +.+..+....   +...|.+++|+|++.++++|+.||.    |++||+..
T Consensus       291 ~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         291 EFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             CEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            9888774322   2334999999999999999998884    99999864

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=5.4e-20  Score=116.75  Aligned_cols=120  Identities=7%  Similarity=0.039  Sum_probs=96.4

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCCeEEEEEccCCceee---EEEecCCCeEEEEECCC-CCEEEEecCCCcEEEEEeC
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADETVVLYDMVKRKQSG---ALMQHEGTITCLKFTPE-GSHLISCSDDGSIAIFRVG   84 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~~d~~   84 (139)
                      ++|...|.+++|  ++++|++|+.|++|++||+.++....   ...+|...|.+++|+|+ +.++++|+.|+.|++|+..
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~   87 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecc
Confidence            467788888887  89999999999999999998765433   33469999999999986 5578999999999999998


Q ss_pred             CceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCc
Q psy11518         85 SWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        85 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  131 (139)
                      ...........+... .....+.++...+++++.++.+++||++++.
T Consensus        88 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~  133 (342)
T d1yfqa_          88 GSPSFQALTNNEANL-GICRICKYGDDKLIAASWDGLIEVIDPRNYG  133 (342)
T ss_dssp             SSSSEEECBSCCCCS-CEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccceeeccccc
Confidence            877766663333332 5556677788999999999999999986543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1e-19  Score=119.33  Aligned_cols=86  Identities=23%  Similarity=0.324  Sum_probs=74.5

Q ss_pred             ecceeeEEEEec--CCcEEEEeCCCC---eEEEEEccCCceeeEEE-------------ecCCCeEEEEECCCCCEEEEe
Q psy11518         11 HSHTASVRSVAA--TSKLAASSGADE---TVVLYDMVKRKQSGALM-------------QHEGTITCLKFTPEGSHLISC   72 (139)
Q Consensus        11 ~~~~~~v~~~~~--~~~~l~~~~~~~---~v~i~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~l~~~   72 (139)
                      .+|..+|.+++|  ++++|++|+.|+   .|++||+++++.+..+.             +|...|++++|+|++++|+++
T Consensus       228 ~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             -CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             ccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE
Confidence            357778888776  899999999886   59999999988777664             799999999999999999999


Q ss_pred             cCCCcEEEEEeCCceEEEEEEeCCC
Q psy11518         73 SDDGSIAIFRVGSWQLEKLFKKAHK   97 (139)
Q Consensus        73 ~~d~~i~~~d~~~~~~~~~~~~~~~   97 (139)
                      +.|+.|++||+++++.+..+ ..|.
T Consensus       308 s~D~~v~vWd~~~g~~~~~l-~gH~  331 (393)
T d1sq9a_         308 GWDGKLRFWDVKTKERITTL-NMHC  331 (393)
T ss_dssp             ETTSEEEEEETTTTEEEEEE-ECCG
T ss_pred             CCCCEEEEEECCCCCEEEEE-CCcC
Confidence            99999999999999999888 4443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=1.2e-18  Score=109.35  Aligned_cols=118  Identities=13%  Similarity=0.179  Sum_probs=93.0

Q ss_pred             eeeEEEEecCCcEEEEeCCC-CeEEEEEccCCceeeEEE-ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         14 TASVRSVAATSKLAASSGAD-ETVVLYDMVKRKQSGALM-QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        14 ~~~v~~~~~~~~~l~~~~~~-~~v~i~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      ...+.++.+++..+++++.+ +.+++|++...+....+. .|...+++++|+|++.+|++++.||.|++||+.++.....
T Consensus       120 ~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         120 NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             cceeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccc
Confidence            34566777777777777665 579999987665554443 4678899999999999999999999999999998887655


Q ss_pred             EEeCCCCcceeEEEEccC----------CcEEEEEcCCCeEEEEEcCCCce
Q psy11518         92 FKKAHKGTAVNHISIHPS----------GKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~----------~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      ....|... |.+++|+|+          +.++++|+.|+.|++||++++..
T Consensus       200 ~~~~h~~~-v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~  249 (287)
T d1pgua2         200 RWAFRTSK-INAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK  249 (287)
T ss_dssp             CSCCCSSC-EEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred             cccccccc-cceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe
Confidence            43445544 999999874          46899999999999999987543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=6.1e-17  Score=103.15  Aligned_cols=120  Identities=24%  Similarity=0.359  Sum_probs=105.3

Q ss_pred             cceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEE
Q psy11518         12 SHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKL   91 (139)
Q Consensus        12 ~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~   91 (139)
                      .|...+....++++.++++..|+.+++||+.+++.+....++...+.++.++|++.++++++.|+.|++||.+++.....
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  238 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYT  238 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeeccccccccc
Confidence            45556677777899999999999999999999999999988999999999999999999999999999999999998888


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      + ..|... |.+++++  ++++++++.||.|++||+++++....
T Consensus       239 ~-~~h~~~-v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~  278 (355)
T d1nexb2         239 L-QGHTAL-VGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS  278 (355)
T ss_dssp             E-CCCSSC-CCEEEEC--SSEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             c-cccccc-ccccccc--cceeeeeecccccccccccccceecc
Confidence            7 455554 8999886  57899999999999999998876544

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.4e-17  Score=103.65  Aligned_cols=110  Identities=20%  Similarity=0.354  Sum_probs=91.0

Q ss_pred             ecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC-----
Q psy11518         11 HSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS-----   85 (139)
Q Consensus        11 ~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~-----   85 (139)
                      .++...+..+.+++..+++++.|+.|++||+.+.+.+..+..|...+..+  ++++.++++++.||.|++||+..     
T Consensus       175 ~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~~--~~~~~~l~sg~~dg~i~iwd~~~~~~~~  252 (293)
T d1p22a2         175 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI--RFDNKRIVSGAYDGKIKVWDLVAALDPR  252 (293)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEE--ECCSSEEEEEETTSCEEEEEHHHHTSTT
T ss_pred             cccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeeec--cccceEEEEEcCCCEEEEEECCCCcccc
Confidence            35667788888888999999999999999999999999998888887754  45778999999999999999743     


Q ss_pred             ----ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         86 ----WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        86 ----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                          ......+ ..|... |.+++|+  +.+|++++.||.|++||
T Consensus       253 ~~~~~~~~~~~-~~H~~~-V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         253 APAGTLCLRTL-VEHSGR-VFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCTTTTEEEEE-CCCSSC-CCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             ccCCceeeEEe-cCCCCC-EEEEEEc--CCEEEEEecCCEEEEeC
Confidence                2344555 455555 9999985  67899999999999998

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.77  E-value=1.4e-17  Score=106.89  Aligned_cols=116  Identities=14%  Similarity=0.135  Sum_probs=95.7

Q ss_pred             eEEEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCC--cEEEEEeCCceEEEEE
Q psy11518         16 SVRSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG--SIAIFRVGSWQLEKLF   92 (139)
Q Consensus        16 ~v~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~~~d~~~~~~~~~~   92 (139)
                      ...+++| ||+++++++ ++.|.+||...+..+..  .|...|.+++|+|+++.|++++.+.  .|.+||..+++.....
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~   82 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE   82 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee
Confidence            3467898 999999887 47999999988776553  6899999999999999988765543  6899999988766443


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                        .+... +.+++|+|+++++++++.++.+.+|++.+++......
T Consensus        83 --~~~~~-v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  124 (360)
T d1k32a3          83 --ENLGN-VFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  124 (360)
T ss_dssp             --CCCCS-EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             --CCCce-EEeeeecccccccceeccccccccccccccceeeeee
Confidence              44444 9999999999999999999999999999988766543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.76  E-value=1.5e-17  Score=110.02  Aligned_cols=113  Identities=8%  Similarity=0.002  Sum_probs=90.0

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCC---Ccc
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHK---GTA  100 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~~~  100 (139)
                      +.+++++..||+|++||+.+++.+.++..|. .+..++|+|||+++++++.|+.+++||+.+++..........   ...
T Consensus        32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~  110 (426)
T d1hzua2          32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV  110 (426)
T ss_dssp             GEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEE
T ss_pred             eEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcce
Confidence            3366889999999999999999999998775 589999999999999999999999999988875443322211   122


Q ss_pred             eeEEEEccCCcEEEEE-cCCCeEEEEEcCCCceeEEEe
Q psy11518        101 VNHISIHPSGKLALSV-GKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      +.+++|+|||++++++ ..++.+.+||..+++.+....
T Consensus       111 ~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~  148 (426)
T d1hzua2         111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVS  148 (426)
T ss_dssp             EECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEE
T ss_pred             EEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEee
Confidence            5567788899987555 578999999999988776543

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.74  E-value=5.3e-17  Score=104.11  Aligned_cols=120  Identities=11%  Similarity=0.169  Sum_probs=97.0

Q ss_pred             cceeeEEEEec--CCcEEEEeCCC--CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCce
Q psy11518         12 SHTASVRSVAA--TSKLAASSGAD--ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQ   87 (139)
Q Consensus        12 ~~~~~v~~~~~--~~~~l~~~~~~--~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~   87 (139)
                      +|...+.++.|  ||+.|++++.+  ..|.+||.++++.. .+..|...+.+++|+|+++++++++.++.+.+|+..++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            46667777776  99988876644  37999999877644 566789999999999999999999999999999999988


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEc----------CCCeEEEEEcCCCceeE
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVG----------KDKTLRTWNLVKGRSAY  134 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~i~d~~~~~~~~  134 (139)
                      ....+ ..+... +.+++|+|+|++|+.+.          .++.+++||+.+++...
T Consensus       119 ~~~~~-~~~~~~-~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3         119 PTVIE-RSREAM-ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             EEEEE-ECSSSC-CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             eeeee-eccccc-ccchhhccceeeeeeeccccccceeeccccceeeeccccCceee
Confidence            87776 444444 88999999999998643          45679999999876544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=4.8e-16  Score=103.22  Aligned_cols=112  Identities=10%  Similarity=-0.019  Sum_probs=89.9

Q ss_pred             cEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE--EEEEEeC-CCCcce
Q psy11518         25 KLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL--EKLFKKA-HKGTAV  101 (139)
Q Consensus        25 ~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~-~~~~~v  101 (139)
                      -++++.+.++.|.+||..+++.+..+..+. .+..++|+|+|+++++++.|+.+.+||+.+++.  ...+... .+...+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            446899999999999999999999998774 689999999999999999999999999987653  3333221 111224


Q ss_pred             eEEEEccCCcEE-EEEcCCCeEEEEEcCCCceeEEEe
Q psy11518        102 NHISIHPSGKLA-LSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       102 ~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .+..|+|||+++ +++..++.+.+||..+++.+..+.
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~  148 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS  148 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCccccceeeec
Confidence            556678899976 677889999999999999887654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=2.3e-16  Score=99.78  Aligned_cols=89  Identities=13%  Similarity=0.035  Sum_probs=70.4

Q ss_pred             eeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEE--EeCCCCcceeEEEEccCC-cEEEEEcCCCeE
Q psy11518         46 QSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLF--KKAHKGTAVNHISIHPSG-KLALSVGKDKTL  122 (139)
Q Consensus        46 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i  122 (139)
                      .+...++|+..|++++|+|++++|++++.||.|++||+........+  ...|... |.+++|+|++ .++++|+.|+.|
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~-V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP-LLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSC-EEEEEEEESSSEEEEEEETTSCE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCC-EEEEEEeCCCCCEEEEcccccce
Confidence            34455689999999999999999999999999999999765422221  1245544 9999999864 588999999999


Q ss_pred             EEEEcCCCceeEE
Q psy11518        123 RTWNLVKGRSAYI  135 (139)
Q Consensus       123 ~i~d~~~~~~~~~  135 (139)
                      ++|++..+.....
T Consensus        82 ~~w~~~~~~~~~~   94 (342)
T d1yfqa_          82 LKVDLIGSPSFQA   94 (342)
T ss_dssp             EEECSSSSSSEEE
T ss_pred             eeeeccccccccc
Confidence            9999987765543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.64  E-value=2.3e-15  Score=95.78  Aligned_cols=114  Identities=11%  Similarity=0.098  Sum_probs=92.0

Q ss_pred             EecCCcEEEEeCCCCeEEEEEccCCceeeEEEe-cCCCeEEEEECCCCCEE-EEecCCCcEEEEEeCCceEEEEEEeCCC
Q psy11518         20 VAATSKLAASSGADETVVLYDMVKRKQSGALMQ-HEGTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSWQLEKLFKKAHK   97 (139)
Q Consensus        20 ~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~   97 (139)
                      ++.+++++++++.+++|.+||+++++.+.+++. +...+..++|+|+|+++ +++..++.|.+||+.+++....+.....
T Consensus         4 ~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~   83 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSV   83 (346)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCS
T ss_pred             CCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccccc
Confidence            345899999999999999999999999988874 45567899999999987 5667789999999999998877743332


Q ss_pred             C----cceeEEEEccCCcEEEEEc------------CCCeEEEEEcCCCcee
Q psy11518         98 G----TAVNHISIHPSGKLALSVG------------KDKTLRTWNLVKGRSA  133 (139)
Q Consensus        98 ~----~~v~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~  133 (139)
                      .    ..+..++|+|||+++++++            .+..+.+||..+++..
T Consensus        84 ~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  135 (346)
T d1jmxb_          84 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  135 (346)
T ss_dssp             TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             ccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceee
Confidence            2    1256799999999887764            4778999998876654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.63  E-value=1.7e-14  Score=91.43  Aligned_cols=113  Identities=9%  Similarity=0.043  Sum_probs=91.7

Q ss_pred             cEEEEeCCCCeEEEEEccCCceeeEEEec--CCCeEEEEECCCCCEE-EEecCCCcEEEEEeCCceEEEEEEeCCCC---
Q psy11518         25 KLAASSGADETVVLYDMVKRKQSGALMQH--EGTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSWQLEKLFKKAHKG---   98 (139)
Q Consensus        25 ~~l~~~~~~~~v~i~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~---   98 (139)
                      +++++++.|+.|.+||+++++.+..+..+  ...+..++|+|+|+++ ++++.++.|.+||+.+++.+..+......   
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            58999999999999999999999888754  3456799999999987 56778999999999999988877433221   


Q ss_pred             cceeEEEEccCCcEEEEEc------------CCCeEEEEEcCCCceeEEEe
Q psy11518         99 TAVNHISIHPSGKLALSVG------------KDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~------------~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ..+..++|+|++++++++.            .+..+.+||..+++.+..+.
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  132 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE  132 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc
Confidence            2256799999999988775            46789999999988776654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.61  E-value=4.2e-14  Score=93.80  Aligned_cols=133  Identities=11%  Similarity=0.048  Sum_probs=96.4

Q ss_pred             eeeEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCcee--eEEE---ecCCCeEEEEECCCCCEE-EEecCC
Q psy11518          2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQS--GALM---QHEGTITCLKFTPEGSHL-ISCSDD   75 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~--~~~~---~~~~~v~~~~~~~~~~~l-~~~~~d   75 (139)
                      ++.+..+... +...-..+++||+++++++.|+.+.+||+.+++..  ..++   .|.+.+.+..|+|||+++ +++..+
T Consensus        52 ~~v~~~~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~  130 (432)
T d1qksa2          52 YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWP  130 (432)
T ss_dssp             CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEET
T ss_pred             CcEEEEEeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCC
Confidence            3566677653 33344456669999999999999999999887643  2332   455555666778899986 678889


Q ss_pred             CcEEEEEeCCceEEEEEEeC---------CCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcCCCceeEE
Q psy11518         76 GSIAIFRVGSWQLEKLFKKA---------HKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      +.+++||..+++....+...         ........+.++|++..+ ++...++.+.+||..+.+....
T Consensus       131 ~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~  200 (432)
T d1qksa2         131 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT  200 (432)
T ss_dssp             TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE
T ss_pred             CeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceE
Confidence            99999999999888766321         122235678899998765 5667889999999988775543

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.59  E-value=2.9e-13  Score=84.59  Aligned_cols=107  Identities=10%  Similarity=0.193  Sum_probs=87.2

Q ss_pred             EEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEE-EEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEE
Q psy11518         27 AASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHIS  105 (139)
Q Consensus        27 l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~  105 (139)
                      .++++.+++|.+||+++++.+.++... ..+..++|+|+|+++ +++..++.|.+||+.+++.+..+.. +. . +..++
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~-~~-~-~~~~~   80 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-GS-S-PQGVA   80 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-SS-S-EEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec-cc-c-ccccc
Confidence            456788999999999999998888754 456899999999987 5677889999999999998888733 22 2 78899


Q ss_pred             EccCCcEEE-EEcCCCeEEEEEcCCCceeEEEe
Q psy11518        106 IHPSGKLAL-SVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus       106 ~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      |++++..++ ++..++.+.+|+..+++....+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK  113 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccccccccccccceeeecccccceeeeecc
Confidence            999998655 55678899999999988776654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.58  E-value=1e-12  Score=81.97  Aligned_cols=116  Identities=10%  Similarity=0.153  Sum_probs=87.0

Q ss_pred             EEecCCcEEEEeC-CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec---CCCcEEEEEeCCceEEEEEEe
Q psy11518         19 SVAATSKLAASSG-ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS---DDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        19 ~~~~~~~~l~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      .+.+++..++++. .++.+.+|+....+.......+ ..+..+.++++++.++.+.   .++.|.+||..+++....+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~  242 (301)
T d1l0qa2         164 AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV  242 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC
T ss_pred             Eeeccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC
Confidence            3445666665555 4567778887766666655544 4567889999999876553   346799999999998877733


Q ss_pred             CCCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         95 AHKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                        ... +.+++|+|||+++ ++++.|+.|.+||+++++.+..+.+
T Consensus       243 --~~~-~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v  284 (301)
T d1l0qa2         243 --GPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV  284 (301)
T ss_dssp             --CSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred             --CCC-EEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence              223 7899999999976 5777899999999999999887753

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=3.3e-13  Score=85.50  Aligned_cols=110  Identities=10%  Similarity=0.145  Sum_probs=78.9

Q ss_pred             EEEEeCCCCeEEEEEccCCceeeEE--EecCCCeEEEEECCCCCEEE-EecCCCcEEEEEeCCceEEEE-EEeCCCCcce
Q psy11518         26 LAASSGADETVVLYDMVKRKQSGAL--MQHEGTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQLEKL-FKKAHKGTAV  101 (139)
Q Consensus        26 ~l~~~~~~~~v~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~v  101 (139)
                      .++++..+++|++|++.....+..+  ..|.+.+..++|+|+|++|+ ++..|+.|.+|++........ .........+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            3577789999999999765443333  35778899999999999985 455589999999976532211 1112222237


Q ss_pred             eEEEEccCCcEEEEEc-CCCeEEEEEcCCCceeEE
Q psy11518        102 NHISIHPSGKLALSVG-KDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~  135 (139)
                      ..++|+|||+++++++ .++.+.+|+.........
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~  120 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV  120 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceec
Confidence            8899999999988887 477899998877655433

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=1.9e-12  Score=81.78  Aligned_cols=130  Identities=16%  Similarity=0.251  Sum_probs=97.4

Q ss_pred             eeEEEEEeeccee--eEEEEecCCcEE-EEeCCCCeEEEEEccCCceeeEEEecCC-----CeEEEEECCCCCEEEEec-
Q psy11518          3 TLTQTFVTHSHTA--SVRSVAATSKLA-ASSGADETVVLYDMVKRKQSGALMQHEG-----TITCLKFTPEGSHLISCS-   73 (139)
Q Consensus         3 ~~~~~~~~~~~~~--~v~~~~~~~~~l-~~~~~~~~v~i~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~-   73 (139)
                      +.++.+....+..  .-.++++||+++ ++++.++.|.+||+.+++.+..+..+..     .+..++|+|++++++.+. 
T Consensus        22 ~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~  101 (337)
T d1pbyb_          22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYES  101 (337)
T ss_dssp             EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEE
T ss_pred             eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeec
Confidence            4455555433322  344566698887 5678899999999999999888775533     345789999999987775 


Q ss_pred             -----------CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         74 -----------DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        74 -----------~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                                 .+..+.+||..++.....+..  ... +..++|+|+++++++++.+  +.+||..+++....+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~-~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~  171 (337)
T d1pbyb_         102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEA--PRQ-ITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKP  171 (337)
T ss_dssp             EEEECSSCEEECCCEEEEEETTTTEEEEEEEC--CSS-CCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEEC
T ss_pred             CCcceeeeccccccceeeccccCCeEEEeccc--cCC-ceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEee
Confidence                       356788999999988887732  223 7889999999999998765  6789999988776654

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.49  E-value=5.9e-13  Score=84.48  Aligned_cols=109  Identities=13%  Similarity=0.020  Sum_probs=87.3

Q ss_pred             EEEEeCCCCeEEEEEccCCceeeE-EEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEE
Q psy11518         26 LAASSGADETVVLYDMVKRKQSGA-LMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHI  104 (139)
Q Consensus        26 ~l~~~~~~~~v~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~  104 (139)
                      .+.++..+..+.+|+..++..... ...+...+..+.+++++.+++.... +.+.+||..+++.+..+...+   .+.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~---~~~~v  297 (346)
T d1jmxb_         222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDH---TYYCV  297 (346)
T ss_dssp             --CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSS---CCCEE
T ss_pred             eEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCC---CEEEE
Confidence            344455566788899888765543 4567788889999998888776654 579999999999888874333   38899


Q ss_pred             EEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518        105 SIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus       105 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      +|+|||+++++++.|+.|++||+++++.+..+.+
T Consensus       298 a~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         298 AFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence            9999999999999999999999999999988765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.47  E-value=8.3e-13  Score=87.06  Aligned_cols=129  Identities=9%  Similarity=0.012  Sum_probs=86.2

Q ss_pred             eeeEEEEEeecceeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEE--E---ecCCCeEEEEECCCCCEEE-EecCC
Q psy11518          2 YTLTQTFVTHSHTASVRSVAATSKLAASSGADETVVLYDMVKRKQSGAL--M---QHEGTITCLKFTPEGSHLI-SCSDD   75 (139)
Q Consensus         2 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~--~---~~~~~v~~~~~~~~~~~l~-~~~~d   75 (139)
                      ++.+.++... .......+++||+++++++.|+.|++||+.+++.....  .   +|...+.+++|+|+|++++ ++..+
T Consensus        52 ~~~~~~l~~g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~  130 (426)
T d1hzua2          52 KKIVKVIDTG-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWP  130 (426)
T ss_dssp             CSEEEEEECC-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred             CcEEEEEeCC-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCC
Confidence            4566777653 22333456669999999999999999999988755433  2   4555566777888999875 45578


Q ss_pred             CcEEEEEeCCceEEEEEEeCC---------CCcceeEEEEccCCcEEEEE-cCCCeEEEEEcCCCc
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAH---------KGTAVNHISIHPSGKLALSV-GKDKTLRTWNLVKGR  131 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~  131 (139)
                      +.+.+||...+..........         .......+..++++..++.. ...+.+.+++..+..
T Consensus       131 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~  196 (426)
T d1hzua2         131 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  196 (426)
T ss_dssp             SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS
T ss_pred             CeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc
Confidence            999999999988777653211         11124556667766655443 345666666665544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=5.4e-11  Score=75.08  Aligned_cols=116  Identities=10%  Similarity=0.140  Sum_probs=84.3

Q ss_pred             EEEecCCcEEE-EeCCCCeEEEEEccCCceeeEEE---ecCCCeEEEEECCCCCEEEEecC-CCcEEEEEeCCceEEEEE
Q psy11518         18 RSVAATSKLAA-SSGADETVVLYDMVKRKQSGALM---QHEGTITCLKFTPEGSHLISCSD-DGSIAIFRVGSWQLEKLF   92 (139)
Q Consensus        18 ~~~~~~~~~l~-~~~~~~~v~i~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~~~~~~   92 (139)
                      .++++||++|+ ++..++.|.+|++........+.   .+...+..++|+|+|+++++++. ++.+.+|+..........
T Consensus        42 la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~  121 (333)
T d1ri6a_          42 MVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV  121 (333)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecc
Confidence            34566999885 55568999999997764433322   34455678999999999988765 668999998877766555


Q ss_pred             EeCCCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcCCCcee
Q psy11518         93 KKAHKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLVKGRSA  133 (139)
Q Consensus        93 ~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~  133 (139)
                      ........+.++.++|++++++.++ .+..+.+|+.......
T Consensus       122 ~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_         122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             EEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             cccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            4444444488899999999877766 5667999998765443

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.37  E-value=1.4e-11  Score=78.57  Aligned_cols=119  Identities=13%  Similarity=0.052  Sum_probs=90.2

Q ss_pred             EEEEecCCcEEEEeC-----CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEe----------cCCCcEEEE
Q psy11518         17 VRSVAATSKLAASSG-----ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISC----------SDDGSIAIF   81 (139)
Q Consensus        17 v~~~~~~~~~l~~~~-----~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----------~~d~~i~~~   81 (139)
                      +.+.+++++.+++..     .+..|.+||..+++.+.++..+...  .++|+|++++++..          ..++.|.+|
T Consensus         6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~   83 (355)
T d2bbkh_           6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVF   83 (355)
T ss_dssp             CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEE
Confidence            344567888887653     4567999999999999988876544  78999999988754          347889999


Q ss_pred             EeCCceEEEEEEeCCC-----CcceeEEEEccCCcEEEEEc--CCCeEEEEEcCCCceeEEEe
Q psy11518         82 RVGSWQLEKLFKKAHK-----GTAVNHISIHPSGKLALSVG--KDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        82 d~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~  137 (139)
                      |..+++....+.....     ......++|+|++++++.++  .+..+.+|+..+++.+..+.
T Consensus        84 D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_          84 DPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             CTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe
Confidence            9999998877643221     11245689999999887764  56789999999998876654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.25  E-value=1.9e-11  Score=77.97  Aligned_cols=112  Identities=13%  Similarity=0.087  Sum_probs=81.7

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCcee--eEEEec----------CCCeEEEEECCCCCEEEEecCC----------CcEEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQS--GALMQH----------EGTITCLKFTPEGSHLISCSDD----------GSIAI   80 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~--~~~~~~----------~~~v~~~~~~~~~~~l~~~~~d----------~~i~~   80 (139)
                      ++..++.++.++.+.+|+...++..  .....+          ......+++++++..++....+          ..|.+
T Consensus       205 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v  284 (355)
T d2bbkh_         205 KAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVV  284 (355)
T ss_dssp             TTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEE
T ss_pred             CCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEE
Confidence            6667788888999999998776432  112211          1122457888888877655433          36999


Q ss_pred             EEeCCceEEEEEEeCCCCcceeEEEEccCCc--EEEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         81 FRVGSWQLEKLFKKAHKGTAVNHISIHPSGK--LALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        81 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      ||..+++....+...   ..+.+++|+|||+  ++++++.|+.|++||+++++.+..+.
T Consensus       285 ~d~~t~~~~~~~~~~---~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         285 LDAKTGERLAKFEMG---HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             EETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EeCCCCcEEEEecCC---CCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            999999988777432   2378999999997  45677789999999999999988764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.18  E-value=6.7e-09  Score=66.48  Aligned_cols=111  Identities=10%  Similarity=0.006  Sum_probs=75.8

Q ss_pred             CcEEEEeCCCCeEEEEEccCCceeeE--EEec----------CCCeEEEEECCCCCEE----------EEecCCCcEEEE
Q psy11518         24 SKLAASSGADETVVLYDMVKRKQSGA--LMQH----------EGTITCLKFTPEGSHL----------ISCSDDGSIAIF   81 (139)
Q Consensus        24 ~~~l~~~~~~~~v~i~~~~~~~~~~~--~~~~----------~~~v~~~~~~~~~~~l----------~~~~~d~~i~~~   81 (139)
                      +..++..+.++.+.+|+.........  ...+          ......+++++++..+          +....++.+.+|
T Consensus       224 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~  303 (373)
T d2madh_         224 SGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSV  303 (373)
T ss_pred             CceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEE
Confidence            33455666788899998776543211  1111          1122344555555443          445566789999


Q ss_pred             EeCCceEEEEEEeCCCCcceeEEEEccCCcE--EEEEcCCCeEEEEEcCCCceeEEEe
Q psy11518         82 RVGSWQLEKLFKKAHKGTAVNHISIHPSGKL--ALSVGKDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        82 d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~  137 (139)
                      |..+++....+.  +... +..++|+|||+.  +++++.|+.|++||+.+++.+..+.
T Consensus       304 d~~t~~~~~~~~--~~~~-~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~  358 (373)
T d2madh_         304 TGLVGQTSSQIS--LGHD-VDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             ECCCCcEEEEec--CCCC-eeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEC
Confidence            999998888773  2223 889999999984  4678899999999999999988764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.16  E-value=2.3e-09  Score=68.72  Aligned_cols=121  Identities=8%  Similarity=-0.097  Sum_probs=83.9

Q ss_pred             ceeeEEEE--ecCCcEEEEeC-----CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec----------CC
Q psy11518         13 HTASVRSV--AATSKLAASSG-----ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS----------DD   75 (139)
Q Consensus        13 ~~~~v~~~--~~~~~~l~~~~-----~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d   75 (139)
                      +..++...  +++++.+++..     ..+.|.+||..+++.+.++..+...  .++|+|+|+++++++          .+
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccc
Confidence            33444444  45899887652     3467999999999999988766543  789999999998764          45


Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCc-----ceeEEEEccCCcEEEEE--cCCCeEEEEEcCCCceeEE
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGT-----AVNHISIHPSGKLALSV--GKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~--~~d~~i~i~d~~~~~~~~~  135 (139)
                      +.|.+||..+++....+.......     ....+.|+++++.++..  ..++.+.+|+....+....
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~  163 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL  163 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE
Confidence            779999999998877663322211     13457788888865544  3456778888776655443

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.15  E-value=2.6e-10  Score=75.70  Aligned_cols=107  Identities=13%  Similarity=0.115  Sum_probs=82.0

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEe-----cCCCeEEEEECCCCCEEEEec---------CCCcEEEEEeCCceE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQ-----HEGTITCLKFTPEGSHLISCS---------DDGSIAIFRVGSWQL   88 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~---------~d~~i~~~d~~~~~~   88 (139)
                      +++++..  .++.+.+||+.+++....+..     |...|.+++||||+++|+.++         .++.+.+||+.+++.
T Consensus        27 d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~  104 (470)
T d2bgra1          27 DHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL  104 (470)
T ss_dssp             SSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc
Confidence            6766664  467899999999987655543     456789999999999998764         356788999998875


Q ss_pred             EEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         89 EKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        89 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      .. + ..+... +..+.|+|||+.++... ++.+.+|+..+++....
T Consensus       105 ~~-l-~~~~~~-~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~  147 (470)
T d2bgra1         105 IT-E-ERIPNN-TQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRI  147 (470)
T ss_dssp             CC-S-SCCCTT-EEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             cc-c-ccCCcc-ccccccccCcceeeEee-cccceEEECCCCceeee
Confidence            43 3 233333 88999999999999864 67899999998876543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=5e-10  Score=72.14  Aligned_cols=102  Identities=11%  Similarity=-0.039  Sum_probs=79.5

Q ss_pred             CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec----------CCCcEEEEEeCCceEEEEEEeCCC-----C
Q psy11518         34 ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS----------DDGSIAIFRVGSWQLEKLFKKAHK-----G   98 (139)
Q Consensus        34 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~~~-----~   98 (139)
                      ..|.++|..+++.+.....+...  .++|+|+++.++..+          .|+.|.+||..+++....+..+..     +
T Consensus        46 ~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g  123 (368)
T d1mdah_          46 TENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred             ceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceeccc
Confidence            45777799999998888877654  588999999887643          467799999999998887743321     1


Q ss_pred             cceeEEEEccCCcEEEEEc-CCCeEEEEEcCCCceeEEEe
Q psy11518         99 TAVNHISIHPSGKLALSVG-KDKTLRTWNLVKGRSAYITN  137 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~  137 (139)
                      .....++|+|||++++++. .++.+.+||+.+++.+..+.
T Consensus       124 ~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~  163 (368)
T d1mdah_         124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTK  163 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEE
T ss_pred             CCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEee
Confidence            1245689999999888775 57999999999998877654

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.94  E-value=2.3e-09  Score=71.06  Aligned_cols=100  Identities=12%  Similarity=0.092  Sum_probs=73.6

Q ss_pred             EEEecCCcEEEEeC---------CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         18 RSVAATSKLAASSG---------ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        18 ~~~~~~~~~l~~~~---------~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ..++||+++|+.++         .++.+.+||+.+++ +..+..+...+....|||+|+.+|.. .++.+.+|+..++..
T Consensus        67 ~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~  144 (470)
T d2bgra1          67 YSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPS  144 (470)
T ss_dssp             EEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCC
T ss_pred             eEECCCCCEEEEEECCcceeeeccCceEEEEECCCCc-ccccccCCccccccccccCcceeeEe-ecccceEEECCCCce
Confidence            34566999998774         35678999998876 44566788889999999999999885 567899999988776


Q ss_pred             EEEEEeCCC----------------CcceeEEEEccCCcEEEEEcCC
Q psy11518         89 EKLFKKAHK----------------GTAVNHISIHPSGKLALSVGKD  119 (139)
Q Consensus        89 ~~~~~~~~~----------------~~~v~~~~~~~~~~~l~~~~~d  119 (139)
                      .........                ......+.|+|||+.|+....|
T Consensus       145 ~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred             eeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence            544311111                0114568899999999987644

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=4.4e-07  Score=56.27  Aligned_cols=117  Identities=15%  Similarity=0.177  Sum_probs=83.4

Q ss_pred             ceeeEEEEe--cCCcEEEEeCCCCeEEEEEccCCceeeEEE--ecCCCeEEEEECCCCCEEEEecC-CCcEEEEEeCCce
Q psy11518         13 HTASVRSVA--ATSKLAASSGADETVVLYDMVKRKQSGALM--QHEGTITCLKFTPEGSHLISCSD-DGSIAIFRVGSWQ   87 (139)
Q Consensus        13 ~~~~v~~~~--~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~~   87 (139)
                      +......+.  .+++.+++....+.|.+||. +++.+..+.  +.......++++++++.+++-.. ++.|.+|+ .+++
T Consensus       155 ~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~  232 (279)
T d1q7fa_         155 HLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQ  232 (279)
T ss_dssp             TCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSC
T ss_pred             cccccceeeeccceeEEeeeccccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCC
Confidence            333334444  37778888888899999996 556665553  23445688999999997776544 44688888 4577


Q ss_pred             EEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         88 LEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        88 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                      .+..+...........+++.|+|.++++ ..++.|++|...+..+
T Consensus       233 ~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~n~~v~~fr~~~~~~  276 (279)
T d1q7fa_         233 LISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQLAP  276 (279)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCCCC
T ss_pred             EEEEEeCCCCCCCEeEEEEeCCCcEEEE-eCCCeEEEEEeeeecC
Confidence            7777655544444889999999986655 5688999999987655

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.82  E-value=6.2e-08  Score=62.16  Aligned_cols=110  Identities=12%  Similarity=0.030  Sum_probs=74.8

Q ss_pred             eEEEEecCCcEEEEeC----------CCCeEEEEEccCCceeeEEEecCC-------CeEEEEECCCCCEEEEec-CCCc
Q psy11518         16 SVRSVAATSKLAASSG----------ADETVVLYDMVKRKQSGALMQHEG-------TITCLKFTPEGSHLISCS-DDGS   77 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~----------~~~~v~i~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l~~~~-~d~~   77 (139)
                      +...++++++.+++++          .++.|.+||..+++++..+..+..       ....++|+|+|++++.+. .++.
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~  147 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSA  147 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSC
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCe
Confidence            4566778999887653          467899999999998888765432       123689999999988765 5789


Q ss_pred             EEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518         78 IAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus        78 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      +.+||+.+++....+....... +.    ......++..+.||.+..+++...
T Consensus       148 v~~~d~~~~~~~~~~~~~~~~~-~~----~~~~~~~v~~~~Dg~~~~~~~~~~  195 (368)
T d1mdah_         148 AAGLSVPGASDDQLTKSASCFH-IH----PGAAATHYLGSCPASLAASDLAAA  195 (368)
T ss_dssp             EEEEEETTTEEEEEEECSSCCC-CE----EEETTEEECCCCTTSCEEEECCSS
T ss_pred             EEEEECCCCcEeEEeeccCcce-Ec----cCCCceEEEEcCCCCEEEEEecCC
Confidence            9999999999888774433221 11    112234444555666666665443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.76  E-value=3.1e-06  Score=52.91  Aligned_cols=111  Identities=14%  Similarity=0.126  Sum_probs=83.8

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC--ceEEEEEEeCC
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS--WQLEKLFKKAH   96 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~   96 (139)
                      .+.+||+++++...+++|..++....  ...+......+.+++|+++++++++...++.+..++...  +..........
T Consensus        34 Av~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (302)
T d2p4oa1          34 ASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD  111 (302)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             EECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCC
Confidence            45569999999999999988886543  334455667889999999999999888888888887643  33333332222


Q ss_pred             CCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCce
Q psy11518         97 KGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRS  132 (139)
Q Consensus        97 ~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  132 (139)
                       ...+..+++.++++++++.+.++.+..+|...+..
T Consensus       112 -~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~  146 (302)
T d2p4oa1         112 -AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSG  146 (302)
T ss_dssp             -CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             -ccccceeEEccCCCEEeeccccccceeeeccCCcc
Confidence             33378999999999999988899999888877643

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.69  E-value=3.8e-07  Score=60.12  Aligned_cols=110  Identities=11%  Similarity=0.075  Sum_probs=78.5

Q ss_pred             EEEeCCCCeEEEEEccCCceeeEEEe------------------------------cCCCeEEEEECCCCCEEEEe-cCC
Q psy11518         27 AASSGADETVVLYDMVKRKQSGALMQ------------------------------HEGTITCLKFTPEGSHLISC-SDD   75 (139)
Q Consensus        27 l~~~~~~~~v~i~~~~~~~~~~~~~~------------------------------~~~~v~~~~~~~~~~~l~~~-~~d   75 (139)
                      +++++.+|.|++|++.+++.+.++.-                              |.........+|||++++.. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67888999999999998887766521                              22233444456899988655 567


Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc--EEEEEcCCC-----------------eEEEEEcCCCceeEEE
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK--LALSVGKDK-----------------TLRTWNLVKGRSAYIT  136 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~-----------------~i~i~d~~~~~~~~~~  136 (139)
                      ..|.++|+.+++....+..+.... +..++|+|+++  +++..+++.                 .+..+|..+.+...++
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~g-phgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQA-IHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCC-EEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCC-ccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            889999999999888875555444 89999999998  444444332                 2355788887776655


Q ss_pred             e
Q psy11518        137 N  137 (139)
Q Consensus       137 ~  137 (139)
                      .
T Consensus       173 ~  173 (441)
T d1qnia2         173 I  173 (441)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.51  E-value=2.6e-05  Score=49.99  Aligned_cols=113  Identities=16%  Similarity=0.128  Sum_probs=70.6

Q ss_pred             EEecCCcEEE-EeCCCCeEEEEEccCCceeeEEE-------------------ecCCCeEEEEECCCCCEEEEecC----
Q psy11518         19 SVAATSKLAA-SSGADETVVLYDMVKRKQSGALM-------------------QHEGTITCLKFTPEGSHLISCSD----   74 (139)
Q Consensus        19 ~~~~~~~~l~-~~~~~~~v~i~~~~~~~~~~~~~-------------------~~~~~v~~~~~~~~~~~l~~~~~----   74 (139)
                      .+.+++++++ +...++.|.+|+....+......                   .+......+.++|+|++++++..    
T Consensus       199 ~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~  278 (365)
T d1jofa_         199 AMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             EECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCC
Confidence            3445787764 55568899999987654332211                   01123457889999999887643    


Q ss_pred             --CCcEEEEEeCCce-EE---EEEEeCCCCcceeEEEEcc-CCcEEEEEc-CCCeEEEEEcCCCc
Q psy11518         75 --DGSIAIFRVGSWQ-LE---KLFKKAHKGTAVNHISIHP-SGKLALSVG-KDKTLRTWNLVKGR  131 (139)
Q Consensus        75 --d~~i~~~d~~~~~-~~---~~~~~~~~~~~v~~~~~~~-~~~~l~~~~-~d~~i~i~d~~~~~  131 (139)
                        ...|..|++.... ..   ........+....+++++| +|++|+++. .++.|.+|+++...
T Consensus       279 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         279 ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             ccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence              2237777775532 21   1111222333367899998 789877665 67999999876543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.31  E-value=7.2e-05  Score=46.03  Aligned_cols=112  Identities=10%  Similarity=0.095  Sum_probs=78.4

Q ss_pred             cCCcEEEEeCCCCeEEEEEccCCceeeEEE--ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCc
Q psy11518         22 ATSKLAASSGADETVVLYDMVKRKQSGALM--QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGT   99 (139)
Q Consensus        22 ~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~   99 (139)
                      .++.++++....+.+.+++. +++.+..+.  .+......+++.++++.+++....+.|.+||.. ++....+.......
T Consensus       123 ~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~  200 (279)
T d1q7fa_         123 NKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITN  200 (279)
T ss_dssp             TTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSC
T ss_pred             cCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecC-Cceeeeeccccccc
Confidence            36777777777777777774 445555543  344567888999999988888889999999965 56666653333333


Q ss_pred             ceeEEEEccCCcEEEEEcC-CCeEEEEEcCCCceeEEE
Q psy11518        100 AVNHISIHPSGKLALSVGK-DKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       100 ~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~  136 (139)
                      .+..+++.++|+++++-.. ++.|.+|+. +++.+..+
T Consensus       201 ~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~  237 (279)
T d1q7fa_         201 YPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISAL  237 (279)
T ss_dssp             SEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEE
T ss_pred             CCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEE
Confidence            3789999999997777554 457999984 56655443

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.24  E-value=3.1e-05  Score=47.20  Aligned_cols=109  Identities=6%  Similarity=0.054  Sum_probs=74.9

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCC
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG   98 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~   98 (139)
                      ++.++++++++...++.|..++.+...........-.....++++++++++++....+.|..++...... ..+ ....-
T Consensus       146 ~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~-~~~~~  223 (260)
T d1rwia_         146 AVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVL-PFTGL  223 (260)
T ss_dssp             EECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EEC-CCCSC
T ss_pred             eecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEE-ccCCC
Confidence            4445778888888888899998765543322223334568899999999888888888888887654432 222 11222


Q ss_pred             cceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         99 TAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      ..+..|++++++.++++-..+++|+.++...
T Consensus       224 ~~P~~i~~d~~g~l~vad~~~~rI~~i~~~~  254 (260)
T d1rwia_         224 NTPLAVAVDSDRTVYVADRGNDRVVKLTSLE  254 (260)
T ss_dssp             CCEEEEEECTTCCEEEEEGGGTEEEEECCCG
T ss_pred             CCeEEEEEeCCCCEEEEECCCCEEEEEeCCC
Confidence            2378999999999888877788888776543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.22  E-value=0.0001  Score=46.27  Aligned_cols=102  Identities=13%  Similarity=0.225  Sum_probs=71.2

Q ss_pred             EEEEeCCCCeEEEEEccCCceeeE---E---Ee-cCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCC
Q psy11518         26 LAASSGADETVVLYDMVKRKQSGA---L---MQ-HEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKG   98 (139)
Q Consensus        26 ~l~~~~~~~~v~i~~~~~~~~~~~---~---~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~   98 (139)
                      +.++-+..+.|..|++.....+..   +   .. .....-.+++.++|+++++....+.|..||.+.+.....+..+.. 
T Consensus       190 lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~-  268 (314)
T d1pjxa_         190 LIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFE-  268 (314)
T ss_dssp             EEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSS-
T ss_pred             EEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCC-
Confidence            455567788888888764433221   1   11 122345789999999888887788999999887776665533322 


Q ss_pred             cceeEEEEccCCc-EEEEEcCCCeEEEEEcCC
Q psy11518         99 TAVNHISIHPSGK-LALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        99 ~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~  129 (139)
                       .+++++|.|+++ ++++.+.++.|.-+++..
T Consensus       269 -~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         269 -KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             -CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             -CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence             378999999987 556677889998888653

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.13  E-value=0.00014  Score=44.11  Aligned_cols=110  Identities=10%  Similarity=0.114  Sum_probs=69.5

Q ss_pred             EecC--CcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEec-CCC-----cEEEEEeCCceEEEE
Q psy11518         20 VAAT--SKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCS-DDG-----SIAIFRVGSWQLEKL   91 (139)
Q Consensus        20 ~~~~--~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~-----~i~~~d~~~~~~~~~   91 (139)
                      ++|+  |+.++-.+ ++.|.+.|+.+++.. .+..+.+.....+|||||+.||-.. .++     .|.+++...+.....
T Consensus         6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           6 LNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             EEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             cCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            4565  88777554 456888898877654 5666667788899999999987432 222     377777777766544


Q ss_pred             EEeC----CCCcceeEEEEccCCcEEEEEcC------CCeEEEEEcCCCc
Q psy11518         92 FKKA----HKGTAVNHISIHPSGKLALSVGK------DKTLRTWNLVKGR  131 (139)
Q Consensus        92 ~~~~----~~~~~v~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~  131 (139)
                      ....    ..........|+|+++.++....      ...+...+...+.
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  133 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN  133 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence            2111    11112567889999998886532      2234455554443

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=9.8e-06  Score=53.76  Aligned_cols=111  Identities=9%  Similarity=0.083  Sum_probs=75.2

Q ss_pred             CCcEEEEeCCCCeEEEEEccCCceeeEEEec---CCCeEEEEECCCCCEEEEe---------cCCCcEEEEEeCCceEEE
Q psy11518         23 TSKLAASSGADETVVLYDMVKRKQSGALMQH---EGTITCLKFTPEGSHLISC---------SDDGSIAIFRVGSWQLEK   90 (139)
Q Consensus        23 ~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~---------~~d~~i~~~d~~~~~~~~   90 (139)
                      ++.++. -..+|.|.+||+.+++....+...   ...+....|||++++++..         +..+.+.++|+.++....
T Consensus        27 ~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~  105 (465)
T d1xfda1          27 DTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS  105 (465)
T ss_dssp             SSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE
T ss_pred             CCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee
Confidence            444443 456788999999888664444332   2356677899999987754         335678899998887654


Q ss_pred             EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEE
Q psy11518         91 LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYI  135 (139)
Q Consensus        91 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~  135 (139)
                      ..........+....|+|||+.++-.. ++.|.+.+...+..++.
T Consensus       106 l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~l  149 (465)
T d1xfda1         106 LDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRV  149 (465)
T ss_dssp             CCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEE
T ss_pred             ccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEE
Confidence            432222233366788999999988765 56788888877765544

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.05  E-value=0.00012  Score=48.21  Aligned_cols=96  Identities=10%  Similarity=0.018  Sum_probs=69.0

Q ss_pred             ecCCcEEE-EeCCCCeEEEEEccCCceeeEEEe-cCCCeEEEEECCCCCE--EEEecCCC-----------------cEE
Q psy11518         21 AATSKLAA-SSGADETVVLYDMVKRKQSGALMQ-HEGTITCLKFTPEGSH--LISCSDDG-----------------SIA   79 (139)
Q Consensus        21 ~~~~~~l~-~~~~~~~v~i~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~--l~~~~~d~-----------------~i~   79 (139)
                      .+||++++ +...+..|.++|+.+.+....+.- +...+..++|+|+++.  ++..+.+.                 .+.
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~  159 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFT  159 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEE
Confidence            35898875 446788999999999988777653 4567889999998884  33333221                 134


Q ss_pred             EEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC
Q psy11518         80 IFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD  119 (139)
Q Consensus        80 ~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  119 (139)
                      .+|..+.+....+....  . +..+.|+|+|+++++.+.+
T Consensus       160 ~iD~~t~~v~~qI~v~~--~-p~~v~~spdGk~a~vt~~n  196 (441)
T d1qnia2         160 AIDAETMDVAWQVIVDG--N-LDNTDADYTGKYATSTCYN  196 (441)
T ss_dssp             EEETTTCSEEEEEEESS--C-CCCEEECSSSSEEEEEESC
T ss_pred             eecCccceeeEEEecCC--C-ccceEECCCCCEEEEEecC
Confidence            57888777777664433  2 7889999999998877654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.03  E-value=0.00013  Score=46.61  Aligned_cols=77  Identities=14%  Similarity=0.216  Sum_probs=53.8

Q ss_pred             CeEEEEECCCCCEEEEecC-CCcEEEEEeCCc-eEE--EEEEeCCCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcCCC
Q psy11518         56 TITCLKFTPEGSHLISCSD-DGSIAIFRVGSW-QLE--KLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLVKG  130 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~-d~~i~~~d~~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~  130 (139)
                      .+.++.|+|+++++++++. ...|.+|+.... ...  ........+..+..++|+|+++++++.. .++.|.+|++..+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            3678999999998876643 557888876543 222  2222223334489999999999876555 5889999999776


Q ss_pred             ce
Q psy11518        131 RS  132 (139)
Q Consensus       131 ~~  132 (139)
                      +.
T Consensus       226 ~~  227 (365)
T d1jofa_         226 TH  227 (365)
T ss_dssp             TC
T ss_pred             Cc
Confidence            54

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.02  E-value=0.00016  Score=43.94  Aligned_cols=107  Identities=7%  Similarity=0.041  Sum_probs=69.5

Q ss_pred             cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcce
Q psy11518         22 ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAV  101 (139)
Q Consensus        22 ~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v  101 (139)
                      .+++++++-..+..+..++...................++++++++.+++...++.|..+|....... .+....... +
T Consensus       107 ~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~~~~~~-p  184 (260)
T d1rwia_         107 TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPFTDITA-P  184 (260)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCCSSCCS-E
T ss_pred             ccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceee-eeeccccCC-C
Confidence            35666665555555666654333221111111234478899999998888888888999997654433 332233333 7


Q ss_pred             eEEEEccCCcEEEEEcCCCeEEEEEcCCC
Q psy11518        102 NHISIHPSGKLALSVGKDKTLRTWNLVKG  130 (139)
Q Consensus       102 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~  130 (139)
                      ..+++.++++++++....+.|..++....
T Consensus       185 ~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         185 WGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             EEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             ccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence            88999999998888888888888876543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=97.94  E-value=0.00012  Score=45.53  Aligned_cols=70  Identities=17%  Similarity=0.271  Sum_probs=53.8

Q ss_pred             CeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCC
Q psy11518         56 TITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVK  129 (139)
Q Consensus        56 ~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  129 (139)
                      .+..++++|+|+++++...++.|..++... ......  ..... +.+++|+++|+++++...++.+..++...
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~~~~~--~~~~~-~~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHA--TVEGK-VSGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEE--ECSSE-EEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CEEEEE--cCCCC-cceEEEcCCCCeEEEecCCceEEEEEecc
Confidence            578899999999999999999998888553 333322  22333 89999999999988888888888777654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.2e-05  Score=51.23  Aligned_cols=100  Identities=13%  Similarity=0.074  Sum_probs=65.8

Q ss_pred             EEEEecCCcEEEEe---------CCCCeEEEEEccCCceeeEE--EecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCC
Q psy11518         17 VRSVAATSKLAASS---------GADETVVLYDMVKRKQSGAL--MQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGS   85 (139)
Q Consensus        17 v~~~~~~~~~l~~~---------~~~~~v~i~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~   85 (139)
                      -..+++|+++++.+         +..+.+.++|+.++......  ......+....|||+|+.+|-.. ++.|.+.+...
T Consensus        65 ~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~  143 (465)
T d1xfda1          65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVG  143 (465)
T ss_dssp             EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSS
T ss_pred             eeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCC
Confidence            34577799887765         34578899999887643321  12234455678999999987654 56788888776


Q ss_pred             ceEEEEEEeCCCCc----------------ceeEEEEccCCcEEEEEc
Q psy11518         86 WQLEKLFKKAHKGT----------------AVNHISIHPSGKLALSVG  117 (139)
Q Consensus        86 ~~~~~~~~~~~~~~----------------~v~~~~~~~~~~~l~~~~  117 (139)
                      +.............                .-..+.|+|||+.|+...
T Consensus       144 ~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         144 KQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             SCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence            66555542222111                024678999999998764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.79  E-value=0.00069  Score=45.79  Aligned_cols=60  Identities=10%  Similarity=0.111  Sum_probs=45.2

Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      |.|.-+|+.+++..+.......   ..+-...-.+.+++.++.||.++.+|.++|+.+.++++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l  497 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA  497 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cceEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence            4678899999999988755433   22112233466788899999999999999999988765

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.78  E-value=0.0012  Score=44.79  Aligned_cols=59  Identities=8%  Similarity=0.086  Sum_probs=43.9

Q ss_pred             cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         77 SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        77 ~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .+.-||..+++.++........   ..-...-.+.++++|+.|+.++.+|.++|+.+..+.+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~---~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~  516 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPW---NGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT  516 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSC---CCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cEEEeCCCCCceEeeecCCCCC---CCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEEC
Confidence            5777888999988887544321   1111223577888899999999999999999988764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=0.0011  Score=39.79  Aligned_cols=79  Identities=11%  Similarity=0.132  Sum_probs=52.8

Q ss_pred             eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecC-CC--cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc
Q psy11518         35 TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSD-DG--SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK  111 (139)
Q Consensus        35 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  111 (139)
                      .|.+.|.... ....+..+...+..-+|||||+.||-... .+  .+.+.+...+......  ..... .....|+|+|+
T Consensus        20 ~l~i~d~dG~-~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~spdg~   95 (269)
T d2hqsa1          20 ELRVSDYDGY-NQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA--SFPRH-NGAPAFSPDGS   95 (269)
T ss_dssp             EEEEEETTSC-SCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE--CCSSC-EEEEEECTTSS
T ss_pred             EEEEEcCCCC-CcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEe--eeecc-cccceecCCCC
Confidence            5778886544 44444445667888999999999985433 22  3666666666554443  33333 77899999999


Q ss_pred             EEEEEc
Q psy11518        112 LALSVG  117 (139)
Q Consensus       112 ~l~~~~  117 (139)
                      .++...
T Consensus        96 ~i~~~~  101 (269)
T d2hqsa1          96 KLAFAL  101 (269)
T ss_dssp             EEEEEE
T ss_pred             eeeEee
Confidence            887654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=0.0013  Score=39.51  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=61.1

Q ss_pred             EEEEeCCCCe--EEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC-CcE--EEEEeCCceEEEEEEeCCCCcc
Q psy11518         26 LAASSGADET--VVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD-GSI--AIFRVGSWQLEKLFKKAHKGTA  100 (139)
Q Consensus        26 ~l~~~~~~~~--v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i--~~~d~~~~~~~~~~~~~~~~~~  100 (139)
                      .+++...++.  |...+...+.. ..+...........|+|+++.++..+.+ +..  .+.+...+.. ...  ..... 
T Consensus       141 ~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~--~~~~~-  215 (269)
T d2hqsa1         141 LAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL--SSTFL-  215 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EEC--CCSSS-
T ss_pred             ceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEEeecCCceeeeEeecccccc-eEe--ecCcc-
Confidence            4444444553  44445444432 2233345556778899999988765443 344  4445444433 222  22222 


Q ss_pred             eeEEEEccCCcEEEEEc---CCCeEEEEEcCCCceeE
Q psy11518        101 VNHISIHPSGKLALSVG---KDKTLRTWNLVKGRSAY  134 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~---~d~~i~i~d~~~~~~~~  134 (139)
                      .....|+|||+.|+..+   ....|.++++..+....
T Consensus       216 ~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~  252 (269)
T d2hqsa1         216 DETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR  252 (269)
T ss_dssp             CEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE
T ss_pred             ccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE
Confidence            56789999999887544   34568999998776544

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.66  E-value=0.001  Score=45.13  Aligned_cols=60  Identities=13%  Similarity=0.108  Sum_probs=43.0

Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      |.|.-+|+.+++..+........   .+-...-.+.++++++.|+.++.+|.++|+.+.++++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~---~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l  503 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAA---WGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM  503 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCC---CSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ccEEEeccCCCceeeEcCCCCCC---CcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence            45777888888888877544321   1111122466777899999999999999999988765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.58  E-value=0.0026  Score=39.69  Aligned_cols=82  Identities=6%  Similarity=0.027  Sum_probs=58.1

Q ss_pred             CCeEEEEECCCCCEE-EEecCCCcEEEEEeCCc-e---EE-E--EEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEE
Q psy11518         55 GTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSW-Q---LE-K--LFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWN  126 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~-~---~~-~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d  126 (139)
                      ...+.++|+|+++.| ++-...+.|..|++... .   .. .  ......... ...+++.++|++.++....+.|.+||
T Consensus       177 ~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~-PdGl~vD~~G~l~Va~~~~g~V~~~~  255 (319)
T d2dg1a1         177 SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEG-PDSCCIDSDDNLYVAMYGQGRVLVFN  255 (319)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSE-EEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             ceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccc-eeeeeEcCCCCEEEEEcCCCEEEEEC
Confidence            345789999999866 55566888999998642 1   11 1  111122223 67899999999888888899999999


Q ss_pred             cCCCceeEEEec
Q psy11518        127 LVKGRSAYITNL  138 (139)
Q Consensus       127 ~~~~~~~~~~~~  138 (139)
                      . +++.+..+.+
T Consensus       256 p-~G~~l~~i~~  266 (319)
T d2dg1a1         256 K-RGYPIGQILI  266 (319)
T ss_dssp             T-TSCEEEEEEC
T ss_pred             C-CCcEEEEEeC
Confidence            5 6888777653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.43  E-value=0.0047  Score=39.04  Aligned_cols=112  Identities=9%  Similarity=0.025  Sum_probs=72.7

Q ss_pred             ecCCcEEEEeCCCC-----------eEEEEEccCCcee--eEEE-ecCCCeEEEEECCCCCEEEEecCC-CcEEEEEeCC
Q psy11518         21 AATSKLAASSGADE-----------TVVLYDMVKRKQS--GALM-QHEGTITCLKFTPEGSHLISCSDD-GSIAIFRVGS   85 (139)
Q Consensus        21 ~~~~~~l~~~~~~~-----------~v~i~~~~~~~~~--~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-~~i~~~d~~~   85 (139)
                      ..+++.++.|+.+.           .+.+||+.+++-.  .... .+.......++.+++++++.|+.+ ..+.+||..+
T Consensus        28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~  107 (387)
T d1k3ia3          28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSS  107 (387)
T ss_dssp             TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred             eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCcc
Confidence            34888888877421           3678999887432  2222 232333456788999999988765 5799999988


Q ss_pred             ceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCC------CeEEEEEcCCCcee
Q psy11518         86 WQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKD------KTLRTWNLVKGRSA  133 (139)
Q Consensus        86 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~  133 (139)
                      ......-....... -...+..+|++.++.++.+      ..+.+||..+.+..
T Consensus       108 ~~w~~~~~~~~~r~-~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~  160 (387)
T d1k3ia3         108 DSWIPGPDMQVARG-YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT  160 (387)
T ss_dssp             TEEEECCCCSSCCS-SCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred             Cccccccccccccc-ccceeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence            76543221111111 3456777899999888742      45899999887643

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.42  E-value=0.0026  Score=43.16  Aligned_cols=60  Identities=13%  Similarity=0.129  Sum_probs=44.8

Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      |.|.-+|+.+++..+.......   +..-...-.+.++++|+.||.++.+|.++|+.+.++.+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p---~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~  525 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP---LWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT  525 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC---CCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             CeEEEEcCCCCcEEeecCCCCC---CccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence            5677888888988888754432   22212234567888899999999999999999988765

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=97.36  E-value=0.0015  Score=40.73  Aligned_cols=65  Identities=8%  Similarity=0.116  Sum_probs=50.4

Q ss_pred             EecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCE-EEEecCCCcEEEEEeC
Q psy11518         20 VAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSH-LISCSDDGSIAIFRVG   84 (139)
Q Consensus        20 ~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~   84 (139)
                      +..+|++.++....+.|.+||++.++.+..+.......++++|.|+++. +++.+.++.|.-+++.
T Consensus       233 vD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            3347888887777899999999888777777766667899999998874 4676777878777754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.29  E-value=0.0067  Score=37.76  Aligned_cols=95  Identities=9%  Similarity=0.185  Sum_probs=65.1

Q ss_pred             cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCC----CcEEEEEeCCceEEEEEEeCCC
Q psy11518         22 ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDD----GSIAIFRVGSWQLEKLFKKAHK   97 (139)
Q Consensus        22 ~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~   97 (139)
                      .+|++.++-..++.|..|++++......+.........++++++|+++++...+    +.+...+...............
T Consensus        49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  128 (319)
T d2dg1a1          49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST  128 (319)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS
T ss_pred             CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCc
Confidence            378888888888999999988776666555566678899999999988765432    2344445454444444422233


Q ss_pred             CcceeEEEEccCCcEEEEE
Q psy11518         98 GTAVNHISIHPSGKLALSV  116 (139)
Q Consensus        98 ~~~v~~~~~~~~~~~l~~~  116 (139)
                      ...+..+++.++|++.++.
T Consensus       129 ~~~~nd~~~d~~G~l~vtd  147 (319)
T d2dg1a1         129 AYCIDDMVFDSKGGFYFTD  147 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEE
T ss_pred             ccCCcceeEEeccceeecc
Confidence            3347889999999877664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.24  E-value=0.007  Score=41.17  Aligned_cols=60  Identities=13%  Similarity=0.077  Sum_probs=43.0

Q ss_pred             CcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         76 GSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        76 ~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      |.|.-||..+++..+.......   ..+-..+-.+.+++.|+.||.++.+|.++|+.+.++.+
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~---~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~  512 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFA---VWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI  512 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             ceEEEEeCCCCceecccCCCCC---CccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence            4677888888888776643322   11111223567788899999999999999999988764

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.22  E-value=0.0016  Score=39.15  Aligned_cols=69  Identities=17%  Similarity=0.194  Sum_probs=47.5

Q ss_pred             ECCC--CCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEEcC----C--CeEEEEEcCCCcee
Q psy11518         62 FTPE--GSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSVGK----D--KTLRTWNLVKGRSA  133 (139)
Q Consensus        62 ~~~~--~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d--~~i~i~d~~~~~~~  133 (139)
                      .+|+  |+.++-. .++.|.+.|+..++.....  .+.+. ....+|+|||+.|+....    +  ..|.++++.+++..
T Consensus         6 ~sPdi~G~~v~f~-~~~dl~~~d~~~g~~~~Lt--~~~~~-~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           6 LNPDIHGDRIIFV-CCDDLWEHDLKSGSTRKIV--SNLGV-INNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             EEEEEETTEEEEE-ETTEEEEEETTTCCEEEEE--CSSSE-EEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             cCCCCCCCEEEEE-eCCcEEEEECCCCCEEEEe--cCCCc-ccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            4677  8877644 3456888899988876543  33344 788999999998885532    2  24777888777655


Q ss_pred             E
Q psy11518        134 Y  134 (139)
Q Consensus       134 ~  134 (139)
                      .
T Consensus        82 ~   82 (281)
T d1k32a2          82 R   82 (281)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.89  E-value=0.0095  Score=40.14  Aligned_cols=80  Identities=10%  Similarity=0.131  Sum_probs=54.7

Q ss_pred             CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCc-
Q psy11518         33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGK-  111 (139)
Q Consensus        33 ~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-  111 (139)
                      .|.+.-+|+.+++.+....... ....-.+.-.+.+++.|+.||.++.+|..+++.++.+....... -.-+.+..+|+ 
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~-~~P~ty~~dGkq  514 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIV-AAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTEE
T ss_pred             ccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCcc-ccCEEEEECCEE
Confidence            3678889999999887765322 22221223356677889999999999999999999986654322 22355666786 


Q ss_pred             EEE
Q psy11518        112 LAL  114 (139)
Q Consensus       112 ~l~  114 (139)
                      +|+
T Consensus       515 yv~  517 (560)
T d1kv9a2         515 YVA  517 (560)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.86  E-value=0.0052  Score=41.63  Aligned_cols=78  Identities=15%  Similarity=0.086  Sum_probs=55.8

Q ss_pred             CCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcE
Q psy11518         33 DETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL  112 (139)
Q Consensus        33 ~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  112 (139)
                      .|.|.-+|+.+++.+....... ++..-..+..+.+++.|+.||.++.+|..+++.++.+....... -.-+.+..+|+.
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~-~~P~ty~~~G~q  542 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIV-SPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCcc-ccCEEEEECCEE
Confidence            4678889999999888776443 22221223356677889999999999999999999996654433 223667778864

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.80  E-value=0.0082  Score=40.57  Aligned_cols=77  Identities=10%  Similarity=0.092  Sum_probs=53.5

Q ss_pred             CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcE
Q psy11518         34 ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL  112 (139)
Q Consensus        34 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  112 (139)
                      |.+.-||+.+++.+...+... +...-..+-.+.++++|+.|+.++.+|..+++.++.+....... -.-+.|..+|++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~-~~P~ty~~~GkQ  533 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV-AAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTEE
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcc-ccCEEEEECCEE
Confidence            578899999999988876432 11111122356788889999999999999999999986554322 122555667873

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.75  E-value=0.023  Score=34.89  Aligned_cols=114  Identities=9%  Similarity=0.108  Sum_probs=72.5

Q ss_pred             CCcEEEEeC----CCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEE-EEecCCCcEEEEEeCCc------eEEEE
Q psy11518         23 TSKLAASSG----ADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHL-ISCSDDGSIAIFRVGSW------QLEKL   91 (139)
Q Consensus        23 ~~~~l~~~~----~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~~~d~~~~------~~~~~   91 (139)
                      +|.+.++..    ..+.-.+|.+..++........ ...+.++|+++++.+ ++-+..+.|..+++...      +....
T Consensus       113 ~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~  191 (295)
T d2ghsa1         113 SGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVF  191 (295)
T ss_dssp             TSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE-SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEE
T ss_pred             CCCEEEEeccccccccceeEeeecCCcEEEEeecc-CCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEE
Confidence            666655542    1234456666666554444433 345789999998865 45566788988887431      11122


Q ss_pred             EEeCCCCcceeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEEec
Q psy11518         92 FKKAHKGTAVNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYITNL  138 (139)
Q Consensus        92 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  138 (139)
                      .........+..+++..+|++.++.-..+.|..||. +++.+..+.+
T Consensus       192 ~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l  237 (295)
T d2ghsa1         192 IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV  237 (295)
T ss_dssp             EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred             eccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC
Confidence            212223333788999999998777767789999995 6777777654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.57  E-value=0.032  Score=34.24  Aligned_cols=107  Identities=21%  Similarity=0.193  Sum_probs=69.2

Q ss_pred             EEEEec--CCcEEEEeCCCCeEEEEEccCCceeeEEEe----cCCCeEEEEECCCCCEEEEecC----CCcEEEEEeCCc
Q psy11518         17 VRSVAA--TSKLAASSGADETVVLYDMVKRKQSGALMQ----HEGTITCLKFTPEGSHLISCSD----DGSIAIFRVGSW   86 (139)
Q Consensus        17 v~~~~~--~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~   86 (139)
                      +.++.+  ++.++++. .+ -+..+|..+++.......    ....++.+.+.|+|++.++...    .+.-.+|.+..+
T Consensus        61 ~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g  138 (295)
T d2ghsa1          61 GSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG  138 (295)
T ss_dssp             EEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT
T ss_pred             cEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCC
Confidence            344554  66666654 44 488899988865433221    1124678889999998776543    234567777777


Q ss_pred             eEEEEEEeCCCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcC
Q psy11518         87 QLEKLFKKAHKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLV  128 (139)
Q Consensus        87 ~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~  128 (139)
                      +....... .. . ...++|+++++.+ ++-+..+.|..|++.
T Consensus       139 ~~~~~~~~-~~-~-~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         139 KVTKLFAD-IS-I-PNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             EEEEEEEE-ES-S-EEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             cEEEEeec-cC-C-cceeeecCCCceEEEeecccceeeEeeec
Confidence            66555422 12 2 5789999999855 555678889988874

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.42  E-value=0.0077  Score=40.96  Aligned_cols=77  Identities=12%  Similarity=0.053  Sum_probs=52.7

Q ss_pred             CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcE
Q psy11518         34 ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKL  112 (139)
Q Consensus        34 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  112 (139)
                      |.|.-||+.+++.+...... .....-.++-.+.+++.|+.||.++.+|..+++.++.+....... -.-+.+..+|+.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~-a~P~tY~~dGkQ  529 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAI-GYPMTYTHKGTQ  529 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTEE
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcc-cCCeEEEECCEE
Confidence            67889999999887765422 222221223356777789999999999999999999986554322 223556667874

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.33  E-value=0.0095  Score=40.28  Aligned_cols=78  Identities=13%  Similarity=0.043  Sum_probs=53.1

Q ss_pred             CeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEE
Q psy11518         34 ETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLA  113 (139)
Q Consensus        34 ~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  113 (139)
                      |.|.-+|+.+++.+.+...-. ...+-...-.+.++++++.|+.++.+|.++++.++.+....... -.-+.|..+|+..
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~-a~P~ty~~dGkqY  521 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI-GSPMTYSFKGKQY  521 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTEEE
T ss_pred             ccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCce-ecceEEEECCEEE
Confidence            578889999998887765321 11111112245677789999999999999999999986654433 2336666688743

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.22  E-value=0.074  Score=34.71  Aligned_cols=91  Identities=15%  Similarity=0.186  Sum_probs=57.7

Q ss_pred             eEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCC---------------cEEEEEe----------------
Q psy11518         35 TVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDG---------------SIAIFRV----------------   83 (139)
Q Consensus        35 ~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---------------~i~~~d~----------------   83 (139)
                      .+.+.|.++.+......-- .....+.++++|+++++.+.+.               .+.+++.                
T Consensus       174 ~~t~ID~~tm~V~~QV~V~-g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ein  252 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN  252 (459)
T ss_dssp             EEEEEETTTTEEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred             EEEEEecCCceEEEEeeeC-CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeC
Confidence            3667888888777666533 3456789999999988765331               1333332                


Q ss_pred             -------CCc---eEEEEEEeCCCCcceeEEEEccCCcEEEEEc-CCCeEEEEEcCC
Q psy11518         84 -------GSW---QLEKLFKKAHKGTAVNHISIHPSGKLALSVG-KDKTLRTWNLVK  129 (139)
Q Consensus        84 -------~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~i~d~~~  129 (139)
                             +..   .....+..+.   ....+..+|||+++++++ .+..+.++|++.
T Consensus       253 gV~VVD~~~~~~~~v~~yIPVpK---sPHGV~vSPDGKyi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         253 GVKVVDGRKEASSLFTRYIPIAN---NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             TEEEEECSGG--CSSEEEEEEES---SCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred             CceeecccccCCcceeEEEecCC---CCCceEECCCCCEEEEeCCcCCcEEEEEehh
Confidence                   211   1112221111   156789999999887776 589999999863

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.45  E-value=0.14  Score=32.91  Aligned_cols=96  Identities=11%  Similarity=0.097  Sum_probs=57.7

Q ss_pred             EEEecCCcEEEEe-----CCCCeEEEEEccCCceeeE-EEecCCCeEEEEECCCCCEEEEecCC----------------
Q psy11518         18 RSVAATSKLAASS-----GADETVVLYDMVKRKQSGA-LMQHEGTITCLKFTPEGSHLISCSDD----------------   75 (139)
Q Consensus        18 ~~~~~~~~~l~~~-----~~~~~v~i~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d----------------   75 (139)
                      .++++++++++.+     +....++++|+.+++.+.. +..  .....+.|.++++.|+-...+                
T Consensus       130 ~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~  207 (430)
T d1qfma1         130 YAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLH  207 (430)
T ss_dssp             EEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCC
T ss_pred             eEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccccCCc
Confidence            3566788887733     2345899999999987642 222  122567899999887643221                


Q ss_pred             CcEEEEEeCCceE--EEEEEeCCCCcceeEEEEccCCcEEEE
Q psy11518         76 GSIAIFRVGSWQL--EKLFKKAHKGTAVNHISIHPSGKLALS  115 (139)
Q Consensus        76 ~~i~~~d~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~  115 (139)
                      ..+..+.+.+...  ...+.......-+..+..+.++++++.
T Consensus       208 ~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         208 QKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             ceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence            2466777665432  223322222222566778889998764

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.01  E-value=0.2  Score=31.14  Aligned_cols=106  Identities=14%  Similarity=0.209  Sum_probs=71.0

Q ss_pred             cCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCc-eEEEEEEeCC--CC
Q psy11518         22 ATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSW-QLEKLFKKAH--KG   98 (139)
Q Consensus        22 ~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~--~~   98 (139)
                      |..+.++.-+ ...+.+||+++.+.++.+.-. ..|.-..|-.+. .|+-... ..|.-|++... .+...+....  ..
T Consensus        72 P~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~~-~L~lVT~-taVYHW~~~g~s~P~k~fdR~~~L~~  147 (327)
T d1utca2          72 PASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVTD-NAVYHWSMEGESQPVKMFDRHSSLAG  147 (327)
T ss_dssp             SSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSSS-EEEEECS-SEEEEEESSSSCCCEEEEECCGGGTT
T ss_pred             CCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCCC-EEEEEcC-CceEEEcccCCCCchhhhhhcccccC
Confidence            4566666555 568999999999988887644 467788887554 4443332 36999998543 3444442221  12


Q ss_pred             cceeEEEEccCCcEEEEEc-------CCCeEEEEEcCCCc
Q psy11518         99 TAVNHISIHPSGKLALSVG-------KDKTLRTWNLVKGR  131 (139)
Q Consensus        99 ~~v~~~~~~~~~~~l~~~~-------~d~~i~i~d~~~~~  131 (139)
                      ..|..-..+++.+|++..|       -.|.+.+|..+.+.
T Consensus       148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~  187 (327)
T d1utca2         148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV  187 (327)
T ss_dssp             CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE
T ss_pred             ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc
Confidence            4477888899999887654       24778888887653

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=94.96  E-value=0.25  Score=32.19  Aligned_cols=111  Identities=13%  Similarity=0.176  Sum_probs=75.9

Q ss_pred             EEEeCCCCeEEEEEccCCceeeEEEec-----------------------------------------CCCeEEEEECC-
Q psy11518         27 AASSGADETVVLYDMVKRKQSGALMQH-----------------------------------------EGTITCLKFTP-   64 (139)
Q Consensus        27 l~~~~~~~~v~i~~~~~~~~~~~~~~~-----------------------------------------~~~v~~~~~~~-   64 (139)
                      +.+|+..|.|+++-+.+++.+..+.-.                                         ..--..+++.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            678899999999999888766554200                                         00012455543 


Q ss_pred             --CCCEEEEec-CCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEc--cCCcEEEEEcCCC------------------e
Q psy11518         65 --EGSHLISCS-DDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIH--PSGKLALSVGKDK------------------T  121 (139)
Q Consensus        65 --~~~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~------------------~  121 (139)
                        ||+++.... .+..|.+.|++..+.......+.... +..++..  |+..+++.++++.                  .
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~-~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKG-IHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCS-EEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCC-CceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence              788887665 57889999999999888775554444 6666664  4566777776532                  3


Q ss_pred             EEEEEcCCCceeEEEec
Q psy11518        122 LRTWNLVKGRSAYITNL  138 (139)
Q Consensus       122 i~i~d~~~~~~~~~~~~  138 (139)
                      +.++|..+.+...++.+
T Consensus       175 ~t~ID~~tm~V~~QV~V  191 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLV  191 (459)
T ss_dssp             EEEEETTTTEEEEEEEE
T ss_pred             EEEEecCCceEEEEeee
Confidence            67789988887776654

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.01  E-value=0.25  Score=31.75  Aligned_cols=57  Identities=16%  Similarity=0.159  Sum_probs=38.0

Q ss_pred             eEEEEECCCCCEEEEe-cCCC----cEEEEEeCCceEEEEEEeCCCCcceeEEEEccCCcEEEEE
Q psy11518         57 ITCLKFTPEGSHLISC-SDDG----SIAIFRVGSWQLEKLFKKAHKGTAVNHISIHPSGKLALSV  116 (139)
Q Consensus        57 v~~~~~~~~~~~l~~~-~~d~----~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  116 (139)
                      +...+++|++++++.+ +..|    .|+++|+.+++.+........   ...++|.++++.++..
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~---~~~~~W~~D~~~~~Y~  188 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK---FSCMAWTHDGKGMFYN  188 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC---SCCEEECTTSSEEEEE
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccccc---ccceEEcCCCCEEEEE
Confidence            4456789999988733 3333    589999999987653311111   2458899999977644

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.14  E-value=0.6  Score=29.76  Aligned_cols=99  Identities=9%  Similarity=0.038  Sum_probs=65.5

Q ss_pred             eEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEE--
Q psy11518         16 SVRSVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFK--   93 (139)
Q Consensus        16 ~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~--   93 (139)
                      .+..+++++..+++.. ++.+..++...-........-...+..+.++|.  .++....++.+.++++.++.......  
T Consensus        88 ~v~~vafs~d~l~v~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v  164 (381)
T d1xipa_          88 DVIFVCFHGDQVLVST-RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNV  164 (381)
T ss_dssp             TEEEEEEETTEEEEEE-SSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESE
T ss_pred             CeEEEEeeCCEEEEEe-CCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCc
Confidence            4666777666666554 456788887665555554445566778887764  56667778889999998876443321  


Q ss_pred             --eCCCCcceeEEEEccCCcEEEEEcC
Q psy11518         94 --KAHKGTAVNHISIHPSGKLALSVGK  118 (139)
Q Consensus        94 --~~~~~~~v~~~~~~~~~~~l~~~~~  118 (139)
                        ..-.+. +.+++|++.|..++++..
T Consensus       165 ~~~~~~~~-~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         165 TSFDVTNS-QLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             EEEEECSS-EEEEEETTSCEEEEEEET
T ss_pred             ceEEecCC-ceEEEEeCCcEEEEEeCC
Confidence              111233 788999998888887743

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=92.68  E-value=0.58  Score=29.01  Aligned_cols=71  Identities=14%  Similarity=0.123  Sum_probs=44.1

Q ss_pred             EECCCCCEEEEecCCC-----------cEEEEEeCCceEE--EEEEeCCCCcceeEEEEccCCcEEEEEcCC-CeEEEEE
Q psy11518         61 KFTPEGSHLISCSDDG-----------SIAIFRVGSWQLE--KLFKKAHKGTAVNHISIHPSGKLALSVGKD-KTLRTWN  126 (139)
Q Consensus        61 ~~~~~~~~l~~~~~d~-----------~i~~~d~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~i~d  126 (139)
                      ....+++.++.|+.+.           .+.+||..++...  ......+... ....++.+++++++.|+.+ ..+.+||
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~-~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF-CPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS-SCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccc-eeEEEEecCCcEEEeecCCCcceeEec
Confidence            3345666666655321           2668998776532  2232233222 3456788999999988754 6799999


Q ss_pred             cCCCce
Q psy11518        127 LVKGRS  132 (139)
Q Consensus       127 ~~~~~~  132 (139)
                      ..+.+.
T Consensus       105 ~~~~~w  110 (387)
T d1k3ia3         105 SSSDSW  110 (387)
T ss_dssp             GGGTEE
T ss_pred             CccCcc
Confidence            877654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.86  E-value=1.1  Score=27.89  Aligned_cols=62  Identities=16%  Similarity=0.218  Sum_probs=37.9

Q ss_pred             CCeEEEEECCCCCEEE-EecCCCcEEEEEeCCceEEEEEEeCCCCcceeEEEEcc-CCcEEEEE
Q psy11518         55 GTITCLKFTPEGSHLI-SCSDDGSIAIFRVGSWQLEKLFKKAHKGTAVNHISIHP-SGKLALSV  116 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~  116 (139)
                      ...+.++++|+++++. +-...+.|+.|++.............-...+-.+.+.+ ++.+.+.+
T Consensus       206 ~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         206 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred             CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence            4568999999988775 55667889999987543222221112223266788876 44444443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=1.1  Score=26.70  Aligned_cols=112  Identities=12%  Similarity=0.041  Sum_probs=70.0

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-Ee-cCCCcEEEEEeCCceEEEEEEe
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SC-SDDGSIAIFRVGSWQLEKLFKK   94 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~~d~~i~~~d~~~~~~~~~~~~   94 (139)
                      .++.| .+++..+-...+.|.+.++..................++.+|...++. +. +..+.|.-.++......... .
T Consensus        82 lAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~-~  160 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-T  160 (266)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE-C
T ss_pred             EEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc-c
Confidence            45555 555555666778899999876655555555556678999988655554 33 23345666666544333333 2


Q ss_pred             CCCCcceeEEEEccCCcEEE-EEcCCCeEEEEEcCCCc
Q psy11518         95 AHKGTAVNHISIHPSGKLAL-SVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        95 ~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~  131 (139)
                      ..-.. +..+++.+.++.|. +-...+.|...|+....
T Consensus       161 ~~~~~-p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         161 ENIQW-PNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             SSCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cccce-eeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence            22233 78899998666544 44667888888886543

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.96  E-value=1.1  Score=26.62  Aligned_cols=112  Identities=7%  Similarity=-0.043  Sum_probs=64.5

Q ss_pred             EEEec-CCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEE-EecCCCcEEEE--EeCCceEEEEEE
Q psy11518         18 RSVAA-TSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLI-SCSDDGSIAIF--RVGSWQLEKLFK   93 (139)
Q Consensus        18 ~~~~~-~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~~~--d~~~~~~~~~~~   93 (139)
                      .++.+ .+.+..+-...+.|.+.++........+...-.....++++|...++. +-...+..+++  ++......... 
T Consensus        84 iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~-  162 (263)
T d1npea_          84 IALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILA-  162 (263)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEE-
T ss_pred             EEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeee-
Confidence            34444 444445666778899998865543333333335678999998766655 33222333344  44433322222 


Q ss_pred             eCCCCcceeEEEEccCCcEE-EEEcCCCeEEEEEcCCCc
Q psy11518         94 KAHKGTAVNHISIHPSGKLA-LSVGKDKTLRTWNLVKGR  131 (139)
Q Consensus        94 ~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~  131 (139)
                      ...-.. +.++++.+.++.| ++-...+.|...|+....
T Consensus       163 ~~~~~~-P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~  200 (263)
T d1npea_         163 QDNLGL-PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG  200 (263)
T ss_dssp             CTTCSC-EEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred             eecccc-cceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence            222233 6889998876655 444567888888886543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.67  E-value=1.7  Score=28.15  Aligned_cols=54  Identities=15%  Similarity=0.252  Sum_probs=39.1

Q ss_pred             CCeEEEEECCCCCEEEEecCCCcEEEEEeCCceEEEEEEeC-------CCCcceeEEEEccC
Q psy11518         55 GTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQLEKLFKKA-------HKGTAVNHISIHPS  109 (139)
Q Consensus        55 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------~~~~~v~~~~~~~~  109 (139)
                      ....+|+|.|+++++++--..|.|++++..++.........       .... ...++++|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~G-LLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNG-LLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCS-EEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCc-eeeEEeCCC
Confidence            45689999999999888766789999987777655443221       1123 788999984

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.66  E-value=1.6  Score=27.79  Aligned_cols=94  Identities=4%  Similarity=0.002  Sum_probs=56.2

Q ss_pred             eeeEEEEecCCcEEEEeCCCCeEEEEEccCCceeeEEE-----ecCCCeEEEEECCCCCEEEEecCCCcEEEEEeCCceE
Q psy11518         14 TASVRSVAATSKLAASSGADETVVLYDMVKRKQSGALM-----QHEGTITCLKFTPEGSHLISCSDDGSIAIFRVGSWQL   88 (139)
Q Consensus        14 ~~~v~~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~   88 (139)
                      ..++.++.+....++....++.+.++++..++......     .-.+.+.+++|++.+..++++..+. .        +.
T Consensus       125 ~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~--------q~  195 (381)
T d1xipa_         125 EKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-M--------EK  195 (381)
T ss_dssp             SSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEEEEETTE-E--------EE
T ss_pred             cccccceecCCceeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEEEeCCCc-e--------ee
Confidence            34566777766777777788999999988775432211     1235677888888887777764321 1        11


Q ss_pred             EEEEEeC-------CCCcceeEEEEccCCcEEEEE
Q psy11518         89 EKLFKKA-------HKGTAVNHISIHPSGKLALSV  116 (139)
Q Consensus        89 ~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~  116 (139)
                      ...+...       .....+.++.|-.+..++++-
T Consensus       196 k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         196 QFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             ccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            1111110       112237889998777776644

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.65  E-value=1.4  Score=27.27  Aligned_cols=62  Identities=11%  Similarity=0.033  Sum_probs=44.8

Q ss_pred             EEecCCcEEEEeCCCCeEEEEEccCCceeeEEEecCCCeEEEEECCCCCEEEEecCCCcEEE
Q psy11518         19 SVAATSKLAASSGADETVVLYDMVKRKQSGALMQHEGTITCLKFTPEGSHLISCSDDGSIAI   80 (139)
Q Consensus        19 ~~~~~~~~l~~~~~~~~v~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~   80 (139)
                      .++..-..+..-+.-|.+.+||++++.++..-+-....|...+-..+..-++...++|.+.-
T Consensus       262 qvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         262 QISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             EeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence            33445556777788899999999999999887776777776555555556666667776543

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.76  E-value=0.83  Score=29.64  Aligned_cols=36  Identities=11%  Similarity=0.076  Sum_probs=30.0

Q ss_pred             eeEEEEccCCcEEEEEcCCCeEEEEEcCCCceeEEE
Q psy11518        101 VNHISIHPSGKLALSVGKDKTLRTWNLVKGRSAYIT  136 (139)
Q Consensus       101 v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  136 (139)
                      .++|+|.|+++++++--.+|.|++++..+++.....
T Consensus        29 P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~   64 (450)
T d1crua_          29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVF   64 (450)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             ceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecc
Confidence            789999999999988877899999998887665443