Psyllid ID: psy11525

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240----
Protein Sequence
MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEVIMSGLRTPM
Secondary Structure (PSIPRED)
cccEEEEcccccEEEEEEccEEEEEEcccccccccccccEEEEEccccccccccEEEEEEccEEEEEEccccEEEcccccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccEEEEEEcccEEEEEccccEEccccccccEEEEEEccccccccEEEEEcccEEEEEEccccEEEEcccHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHHHHccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mvqsicwnTDVNILAAMQDSALCVWFFPAvvfadqgllRKTVLLKDigefgkspsiVSFVKNHltirrydgtvinypisPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEVIMSGLRTPM
Flexible Loop (DISEMBL)
MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDigefgkspsivsfVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIEtnekflrlqsevimsglrtpm
Low Complexity Region (SEG)
MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEVIMSGLRTPM
Disordered region (IsUnstruct)
***SICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEV*********
Disordered Region (DISOPRED)
MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLK****FGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEVIMSGLRTPM
Disordered Region (DISEMBL)
MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEVIMSGLRTPM
Disordered Region (DISPRO)
*VQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEVIMSGLR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEVIMSGLRTPM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	244	2.2.26 [Sep-21-2011]
Q9P2H3	777	Intraflagellar transport	yes	N/A	0.938	0.294	0.489	5e-66
Q8K057	777	Intraflagellar transport	yes	N/A	0.942	0.296	0.469	8e-65
Q66HB3	777	Intraflagellar transport	yes	N/A	0.942	0.296	0.469	3e-64

>sp|Q9P2H3|IFT80_HUMAN Intraflagellar transport protein 80 homolog OS=Homo sapiens GN=IFT80 PE=1 SV=3

 Score =  250 bits (639), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 112/229 (48%), Positives = 164/229 (71%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MV ++ WN   NIL  +QD+   VW++P  V+ D+ +L KT+  +D  EF K+P IVSFV
Sbjct: 508 MVHTLAWNDTCNILCGLQDTRFIVWYYPNTVYVDRDILPKTLYERDASEFSKNPHIVSFV 567

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            N +TIRR DG++++  I+PY ++LH Y +S  W  A+ LCR + +  +WACLA MA  +
Sbjct: 568 GNQVTIRRADGSLVHISITPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVAN 627

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           RD+ T+E AYAAI ++DKV YIN IK +P K ++ A + L  GNI EAE +LLQ GL+++
Sbjct: 628 RDMTTAEIAYAAIGEIDKVQYINSIKNLPSKESKMAHILLFSGNIQEAEIVLLQAGLVYQ 687

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFL 229
           AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+L+   K ETN+++L
Sbjct: 688 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYL 736

Component of the intraflagellar transport (IFT) complex B, which is essential for the development and maintenance of motile and sensory cilia.
Homo sapiens (taxid: 9606)

>sp|Q8K057|IFT80_MOUSE Intraflagellar transport protein 80 homolog OS=Mus musculus GN=Ift80 PE=2 SV=1

 Score =  246 bits (629), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 108/230 (46%), Positives = 166/230 (72%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MV ++ W    NIL  +QD+   VW++P  ++ D+ +L KT+  +D  E+ K+P IVSFV
Sbjct: 508 MVHTLAWCDTCNILCGIQDTRFTVWYYPNTIYVDRDILPKTLYERDASEYSKNPHIVSFV 567

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            N +TIRR DG++++  ISPY ++LH Y +S  W +A+ LCR + +  +WACLA MA  +
Sbjct: 568 GNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEEAVRLCRFVKEQSMWACLAAMAVAN 627

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           RD+ T+E AYAA+ ++DKV YIN IK +P + ++ A + +  GNI EAE++LLQ GL+++
Sbjct: 628 RDMVTAEIAYAAVGEIDKVRYINAIKDLPSRESKMAHILMFSGNIQEAETVLLQAGLVYQ 687

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
           AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+LD   K ETN+++L+
Sbjct: 688 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLDTFGKQETNKRYLQ 737

Component of the intraflagellar transport (IFT) complex B, which is essential for the development and maintenance of motile and sensory cilia.

Mus musculus (taxid: 10090)

>sp|Q66HB3|IFT80_RAT Intraflagellar transport protein 80 homolog OS=Rattus norvegicus GN=Ift80 PE=2 SV=1

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 108/230 (46%), Positives = 165/230 (71%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MV ++ W    NIL  +QD+   VW++P  V+ D+ +L KT+  +D  E+ K+P IVSFV
Sbjct: 508 MVHTLAWCDTCNILCGLQDTRFTVWYYPNAVYVDRDILPKTLYERDASEYSKNPHIVSFV 567

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            N +T+RR DG++++  ISPY ++LH Y +S  W  A+ LCR + +  LWACLA MA  +
Sbjct: 568 GNQVTVRRADGSLVHISISPYPAILHEYVSSSKWEDAVRLCRFVKEQSLWACLAAMAVAN 627

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           RD+ T+E AYAA+ ++DKV YIN +K +P + ++ A + +  GNI EAE+ILLQ GL+++
Sbjct: 628 RDMVTAEIAYAAVGEIDKVRYINAMKDLPSRESKMAHILMFSGNIQEAETILLQAGLVYQ 687

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
           AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+L+   K ETN+++L+
Sbjct: 688 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQ 737

Component of the intraflagellar transport (IFT) complex B, which is essential for the development and maintenance of motile and sensory cilia.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
291237999	344	PREDICTED: abnormal CHEmotaxis family me	0.942	0.668	0.539	5e-70
156382726	771	predicted protein [Nematostella vectensi	0.963	0.304	0.523	1e-68
449277291	939	Intraflagellar transport protein 80 like	0.942	0.244	0.526	1e-67
405971480	735	Intraflagellar transport protein 80-like	0.942	0.312	0.504	1e-67
326926211	887	PREDICTED: intraflagellar transport prot	0.942	0.259	0.517	2e-67
327266928	778	PREDICTED: intraflagellar transport prot	0.942	0.295	0.521	6e-67
363737280	778	PREDICTED: intraflagellar transport prot	0.942	0.295	0.513	1e-66
195995615	773	hypothetical protein TRIADDRAFT_49567 [T	0.971	0.306	0.502	2e-65
426342703	433	PREDICTED: intraflagellar transport prot	0.938	0.528	0.493	5e-65
10998235	267	hypothetical protein [Macaca fasciculari	0.938	0.857	0.493	7e-65

>gi|291237999|ref|XP_002738919.1| PREDICTED: abnormal CHEmotaxis family member (che-2)-like, partial [Saccoglossus kowalevskii]

 Score =  270 bits (689), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 124/230 (53%), Positives = 169/230 (73%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           M+ S+ WN   NIL+A+QD  L VW++P  V+ D+ LL KT+L KD  EFGK+P++VSF+
Sbjct: 83  MISSLSWNDTTNILSALQDGKLSVWYYPNAVYVDKELLSKTILEKDTSEFGKNPNLVSFL 142

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            NHLTIRR DG++++  I PY ++LH     + W  A+ LCR + D  +W CLA MA Y+
Sbjct: 143 GNHLTIRRADGSLVSTGIIPYPAMLHELVYGNRWEDAVRLCRFVKDPAMWGCLAAMAAYA 202

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           ++L T+E AYAAI++ DKV +I HIK IP K A+ AEM L  GN  +AE ILLQ GLIFR
Sbjct: 203 KELNTAEIAYAAIDEADKVEFIIHIKEIPSKEARSAEMALFCGNSQDAEGILLQGGLIFR 262

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
           AI ++I  +NWDRALELA++HKTH+DTVL  R+K+LD+ +K ETN++FL+
Sbjct: 263 AIMMNIELYNWDRALELAVKHKTHVDTVLAYRQKFLDDFDKKETNKRFLQ 312

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|156382726|ref|XP_001632703.1| predicted protein [Nematostella vectensis] gi|156219763|gb|EDO40640.1| predicted protein [Nematostella vectensis]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/235 (52%), Positives = 166/235 (70%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MV S+ WN   N+LAA+QD    VW++P  VF DQ +L KT+L KD  +FGK+P I++F+
Sbjct: 508 MVTSMAWNDSTNMLAALQDGRFTVWYYPTAVFVDQDILPKTLLEKDSSDFGKNPHILNFL 567

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
           +NH  +RR DG++ +  ISPY ++LH Y +   W  A+ LCR + D  LWACLA MA Y+
Sbjct: 568 ENHCNMRRADGSLCSTIISPYPAMLHKYCSDSKWDDAVRLCRFVKDPALWACLATMAAYA 627

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           ++L T+E AYAAI++ DKV YINHIK IP K  + A M L    + EAE+ILLQ GL++R
Sbjct: 628 KELNTAETAYAAIDEADKVQYINHIKEIPTKEGRNAAMALFCRQVMEAETILLQAGLVYR 687

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEV 235
           AIQ +I   NWDRALELA++HKTH+DTVL  R+KYLDN  + ET+++FL+    V
Sbjct: 688 AIQTNIDLFNWDRALELAVKHKTHVDTVLAFRQKYLDNFGRKETSKRFLQFAQGV 742

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449277291|gb|EMC85526.1| Intraflagellar transport protein 80 like protein, partial [Columba livia]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/230 (52%), Positives = 167/230 (72%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MVQ++ WN   NIL  +QD+   VW++P  V+ D+ LL KT+  KD  EF K+P IV FV
Sbjct: 678 MVQTLAWNDTSNILCGIQDARFTVWYYPNTVYVDKDLLPKTLYEKDASEFSKNPQIVHFV 737

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            N +TIRR DG++I+  ISPY ++LH Y +S  W  A+ LCR + D  LWACLA MA  +
Sbjct: 738 GNQITIRRADGSLIHLNISPYPAILHEYVSSSKWEDAVRLCRFVKDQTLWACLAAMAVAN 797

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           +D+AT+E AYA+I ++DKV YIN IK +P K ++ A + L  GN  EAE++LLQ GLI++
Sbjct: 798 KDMATAEIAYASIGEIDKVQYINSIKDLPSKESRMAHILLFSGNTQEAETLLLQTGLIYQ 857

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
           AIQV+I  +NWDRALELA++HKTH+DTVL  R+K+L++  K ETN++FL+
Sbjct: 858 AIQVNINLYNWDRALELAVKHKTHVDTVLAYRQKFLEDFGKKETNKRFLQ 907

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405971480|gb|EKC36315.1| Intraflagellar transport protein 80-like protein [Crassostrea gigas]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 116/230 (50%), Positives = 169/230 (73%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           M+QS+CWN   N+LAA+ D    VW++P  ++ D+ L  +TV  K+  EFGK+P +++F+
Sbjct: 449 MIQSLCWNDSANMLAALADGKFTVWYYPNTIYVDRDLASRTVFEKEASEFGKNPQLLNFI 508

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            NH+ IRR +G+++   ISPY ++LHSY  S  W  A+ LCR + DD+LW CLA M+ Y+
Sbjct: 509 GNHIIIRRAEGSLVGTGISPYPAILHSYVQSSRWDDAVRLCRFVKDDVLWCCLAAMSAYA 568

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           ++L T+E AYA+I++ +KV +I +IK IPVK A+ AEM LL G+  +AESILL  GLIFR
Sbjct: 569 KELNTAEIAYASIKEAEKVQFIVNIKDIPVKEARNAEMALLCGSPQDAESILLTAGLIFR 628

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
           AI ++I  +NWDRALELA++HKTH+DTVL  R++YL+  +K E N++FL+
Sbjct: 629 AIMLNIQLYNWDRALELAVKHKTHVDTVLGYRQRYLERFDKKEKNKRFLQ 678

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|326926211|ref|XP_003209297.1| PREDICTED: intraflagellar transport protein 80 homolog [Meleagris gallopavo]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/230 (51%), Positives = 168/230 (73%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MVQ++ WN   N+L  +QD+   VW++P  V+ D+ LL KT+  KD  +F K+P IV FV
Sbjct: 508 MVQTLAWNDTSNLLCGIQDTRFTVWYYPNTVYVDKDLLTKTLYEKDASDFSKNPQIVHFV 567

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            N +TIRR DG++I+  ISPY  +LH Y +S  W  A+ LCR + D  +WACLA MA  +
Sbjct: 568 GNQITIRRADGSLIHVNISPYPVILHEYVSSSKWEDAVRLCRFVKDQTMWACLAAMAVAN 627

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           +D+AT+E AYA+I ++DKV YIN IK +P K ++ A++ L  GNI EAE++LLQ GLI++
Sbjct: 628 KDMATAEIAYASIGEIDKVQYINSIKDLPSKESRMAQILLFSGNIQEAETLLLQTGLIYQ 687

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
           AIQV+I  +NWDRALELA++HKTH+DTVL  R+K+L++  K ETN++FL+
Sbjct: 688 AIQVNINLYNWDRALELAVKHKTHVDTVLAYRQKFLEDFGKKETNKRFLQ 737

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327266928|ref|XP_003218255.1| PREDICTED: intraflagellar transport protein 80 homolog [Anolis carolinensis]

 Score =  259 bits (662), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 168/230 (73%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MV ++ WN   NIL  +QD+   VW++P VV+ D+ LL KT+  KD  EF K+P IVSFV
Sbjct: 508 MVHTLAWNDTCNILCGLQDTRFTVWYYPNVVYVDKDLLPKTLCDKDASEFSKNPQIVSFV 567

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            + +TIRR DG++I+  ISPY S+LH YA +  W  A+ LCR + D  LWACLA MA  +
Sbjct: 568 GSQVTIRRADGSLIHINISPYPSILHEYANNSKWEDAMRLCRFVKDQTLWACLAAMAVSN 627

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           +D+ T+E AYAA+ ++DKV YI+ IK +P K ++ A + L  GNI +AE++LLQ GLI++
Sbjct: 628 KDMNTAEVAYAAVGEIDKVQYISSIKDLPSKESRLAHILLFSGNIQDAETLLLQAGLIYQ 687

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
           AIQV+I  +NW+RALELA++HKTH+DTVL  R+K+LD+  K ETN++FL+
Sbjct: 688 AIQVNINLYNWERALELAVKHKTHVDTVLAYRQKFLDDFGKKETNQRFLQ 737

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|363737280|ref|XP_422817.3| PREDICTED: intraflagellar transport protein 80 homolog [Gallus gallus]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/230 (51%), Positives = 166/230 (72%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MVQ++ WN   N+L  +QD+   VW++P  V+ D+ LL KT+  KD  +F K+P IV FV
Sbjct: 508 MVQTLAWNDTSNLLCGIQDTHFTVWYYPNTVYVDKDLLTKTLYEKDASDFSKNPQIVHFV 567

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            N +TIRR DG++I+  ISPY  +LH Y +S  W  A+ LCR + D  +WACLA MA  +
Sbjct: 568 GNQITIRRADGSLIHINISPYPVILHEYVSSSKWEDAVRLCRFVKDQTMWACLAAMAVAN 627

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           +D+AT+E AYA+I ++DKV YIN IK +P K ++ A + L  GN  EAE++LLQ GLI++
Sbjct: 628 KDMATAEIAYASIGEIDKVQYINFIKDLPSKESRMAHILLFSGNTQEAETLLLQTGLIYQ 687

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
           AIQV+I  +NWDRALELA++HKTH+DTVL  R+K+L++  K ETN++FL+
Sbjct: 688 AIQVNINLYNWDRALELAVKHKTHVDTVLAYRQKFLEDFGKKETNKRFLQ 737

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195995615|ref|XP_002107676.1| hypothetical protein TRIADDRAFT_49567 [Trichoplax adhaerens] gi|190588452|gb|EDV28474.1| hypothetical protein TRIADDRAFT_49567 [Trichoplax adhaerens]

 Score =  254 bits (649), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 119/237 (50%), Positives = 167/237 (70%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MV S+ WN   N+LAA+QD+   +W++P+VV+AD+ +L  T   K+  EFGKSP I+SF 
Sbjct: 511 MVSSLAWNDACNMLAAIQDNHFTIWYYPSVVYADRDILHLTQYEKNASEFGKSPQILSFA 570

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            N+  +RR DG V+    SPY +VLH YA  + W  A+ LCR + D  +WACLA M+ Y+
Sbjct: 571 DNYCVMRRADGAVVTTCTSPYPAVLHEYANKNRWADAVKLCRFIKDPAMWACLAAMSAYA 630

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           +DL+T+E AYAAI++VDKV YI +IK IP +  + A M L     +EAESILLQ GLI+R
Sbjct: 631 KDLSTAEIAYAAIDEVDKVQYITYIKDIPSREGRNAAMALFCRQSAEAESILLQAGLIYR 690

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEVIM 237
           AI++ I  HNW+RAL+LA+++KTH+DTVL  R+KYL  L++ ET++KF +   EV +
Sbjct: 691 AIEMHINNHNWERALDLAIKNKTHVDTVLAFRQKYLSKLKRQETDKKFAKYAQEVTI 747

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|426342703|ref|XP_004037974.1| PREDICTED: intraflagellar transport protein 80 homolog, partial [Gorilla gorilla gorilla]

 Score =  253 bits (646), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 164/229 (71%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MV ++ WN   NIL  +QD+   VW++P  V+ D+ +L KT+  +D  EF K+P IVSFV
Sbjct: 164 MVHTLAWNDTCNILCGLQDTRFIVWYYPNTVYVDRDILPKTLYERDASEFSKNPHIVSFV 223

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            N +TIRR DG++++  ISPY ++LH Y +S  W  A+ LCR + +  +WACLA MA  +
Sbjct: 224 GNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVAN 283

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           RD+ T+E AYAAI ++DKV YIN IK +P K ++ A + L  GNI EAE +LLQ GL+++
Sbjct: 284 RDMTTAEIAYAAIGEIDKVQYINSIKNLPSKESKMAHILLFSGNIQEAEIVLLQAGLVYQ 343

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFL 229
           AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+L+   K ETN+++L
Sbjct: 344 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYL 392

Source: Gorilla gorilla gorilla

Species: Gorilla gorilla

Genus: Gorilla

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|10998235|dbj|BAB17009.1| hypothetical protein [Macaca fascicularis]

 Score =  253 bits (645), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 113/229 (49%), Positives = 164/229 (71%)

Query: 1   MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
           MV ++ WN   NIL  +QD+   VW++P  V+ D+ +L KT+  +D  EF K+P IVSFV
Sbjct: 1   MVHTLAWNDTCNILCGLQDTRFIVWYYPNTVYVDRDILPKTLYERDASEFSKNPRIVSFV 60

Query: 61  KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
            N +TIRR DG++++  ISPY ++LH Y +S  W  A+ LCR + +  +WACLA MA  +
Sbjct: 61  GNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVAN 120

Query: 121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
           RD+ T+E AYAAI ++DKV YIN IK +P K ++ A + L  GNI EAE +LLQ GL+++
Sbjct: 121 RDMTTAEIAYAAIGEIDKVQYINSIKSLPSKESKMAHILLFSGNIQEAEIVLLQAGLVYQ 180

Query: 181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFL 229
           AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+L+   K ETN+++L
Sbjct: 181 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYL 229

Source: Macaca fascicularis

Species: Macaca fascicularis

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	244
UNIPROTKB|E1BT30	780	IFT80 "Uncharacterized protein	0.942	0.294	0.513	5.4e-63
UNIPROTKB|Q9P2H3	777	IFT80 "Intraflagellar transpor	0.938	0.294	0.489	2.1e-61
UNIPROTKB|H3BRJ5	948	H3BRJ5 "Uncharacterized protei	0.938	0.241	0.489	6e-61
UNIPROTKB|F1N0G0	764	F1N0G0 "Uncharacterized protei	0.942	0.301	0.478	1.2e-60
UNIPROTKB|F1PNI0	784	IFT80 "Uncharacterized protein	0.942	0.293	0.478	1.2e-60
MGI|MGI:1915509	777	Ift80 "intraflagellar transpor	0.942	0.296	0.469	3.1e-60
RGD|1312006	777	Ift80 "intraflagellar transpor	0.942	0.296	0.469	1e-59
ZFIN|ZDB-GENE-041212-50	777	ift80 "intraflagellar transpor	0.963	0.302	0.476	2.2e-59
WB|WBGene00000484	760	che-2 [Caenorhabditis elegans	0.963	0.309	0.365	1.8e-41
FB|FBgn0032891	775	Oseg5 "Oseg5" [Drosophila mela	0.930	0.292	0.373	3.5e-37

UNIPROTKB|E1BT30 IFT80 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 118/230 (51%), Positives = 166/230 (72%)

Query:     1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
             MVQ++ WN   N+L  +QD+   VW++P  V+ D+ LL KT+  KD  +F K+P IV FV
Sbjct:   509 MVQTLAWNDTSNLLCGIQDTHFTVWYYPNTVYVDKDLLTKTLYEKDASDFSKNPQIVHFV 568

Query:    61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
              N +TIRR DG++I+  ISPY  +LH Y +S  W  A+ LCR + D  +WACLA MA  +
Sbjct:   569 GNQITIRRADGSLIHINISPYPVILHEYVSSSKWEDAVRLCRFVKDQTMWACLAAMAVAN 628

Query:   121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
             +D+AT+E AYA+I ++DKV YIN IK +P K ++ A + L  GN  EAE++LLQ GLI++
Sbjct:   629 KDMATAEIAYASIGEIDKVQYINFIKDLPSKESRMAHILLFSGNTQEAETLLLQTGLIYQ 688

Query:   181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
             AIQV+I  +NWDRALELA++HKTH+DTVL  R+K+L++  K ETN++FL+
Sbjct:   689 AIQVNINLYNWDRALELAVKHKTHVDTVLAYRQKFLEDFGKKETNKRFLQ 738

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0060349 "bone morphogenesis" evidence=IEA

UNIPROTKB|Q9P2H3 IFT80 "Intraflagellar transport protein 80 homolog" [Homo sapiens (taxid:9606)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 112/229 (48%), Positives = 164/229 (71%)

Query:     1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
             MV ++ WN   NIL  +QD+   VW++P  V+ D+ +L KT+  +D  EF K+P IVSFV
Sbjct:   508 MVHTLAWNDTCNILCGLQDTRFIVWYYPNTVYVDRDILPKTLYERDASEFSKNPHIVSFV 567

Query:    61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
              N +TIRR DG++++  I+PY ++LH Y +S  W  A+ LCR + +  +WACLA MA  +
Sbjct:   568 GNQVTIRRADGSLVHISITPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVAN 627

Query:   121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
             RD+ T+E AYAAI ++DKV YIN IK +P K ++ A + L  GNI EAE +LLQ GL+++
Sbjct:   628 RDMTTAEIAYAAIGEIDKVQYINSIKNLPSKESKMAHILLFSGNIQEAEIVLLQAGLVYQ 687

Query:   181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFL 229
             AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+L+   K ETN+++L
Sbjct:   688 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYL 736

GO:0005932 "microtubule basal body" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

UNIPROTKB|H3BRJ5 H3BRJ5 "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 628 (226.1 bits), Expect = 6.0e-61, P = 6.0e-61
 Identities = 112/229 (48%), Positives = 164/229 (71%)

Query:     1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
             MV ++ WN   NIL  +QD+   VW++P  V+ D+ +L KT+  +D  EF K+P IVSFV
Sbjct:   679 MVHTLAWNDTCNILCGLQDTRFIVWYYPNTVYVDRDILPKTLYERDASEFSKNPHIVSFV 738

Query:    61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
              N +TIRR DG++++  I+PY ++LH Y +S  W  A+ LCR + +  +WACLA MA  +
Sbjct:   739 GNQVTIRRADGSLVHISITPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVAN 798

Query:   121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
             RD+ T+E AYAAI ++DKV YIN IK +P K ++ A + L  GNI EAE +LLQ GL+++
Sbjct:   799 RDMTTAEIAYAAIGEIDKVQYINSIKNLPSKESKMAHILLFSGNIQEAEIVLLQAGLVYQ 858

Query:   181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFL 229
             AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+L+   K ETN+++L
Sbjct:   859 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYL 907

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1N0G0 F1N0G0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 110/230 (47%), Positives = 165/230 (71%)

Query:     1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
             MV ++ W+   NIL  +QD+   VW++P  V+ D+ +L KT+  +D  EF K+P IVSFV
Sbjct:   495 MVHTLAWSDTCNILCGLQDTRFTVWYYPNTVYVDRDILPKTLYERDASEFSKNPHIVSFV 554

Query:    61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
              N +TIRR DG++++  ISPY ++LH Y +S  W  A+ LCR + +  +WACLA MA  +
Sbjct:   555 GNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEDAVRLCRFVKEQTMWACLAAMAVAN 614

Query:   121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
             +D+ T+E AYAAI ++DKV YIN IK +P K ++ A + +  GNI EAE +LLQ GL+++
Sbjct:   615 QDMTTAEIAYAAIGEIDKVQYINSIKNLPSKESKMAHILMFSGNIQEAEIVLLQAGLVYQ 674

Query:   181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
             AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+L+   K ETN+++L+
Sbjct:   675 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQ 724

GO:0060349 "bone morphogenesis" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

UNIPROTKB|F1PNI0 IFT80 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
 Identities = 110/230 (47%), Positives = 164/230 (71%)

Query:     1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
             MV ++ W+   NIL  +QD+   VW++P  V+ D+ +L KT+  +D  EF K+P IVSFV
Sbjct:   515 MVHTLAWSDTCNILCGLQDTRFTVWYYPNTVYVDRDILPKTLYERDASEFSKNPHIVSFV 574

Query:    61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
              N +TIRR DG++++  ISPY ++LH Y +   W  A+ LCR + +  +WACLA MA  +
Sbjct:   575 GNQVTIRRADGSLVHISISPYPAILHEYVSGSKWEDAVRLCRFVKEQTMWACLAAMAVAN 634

Query:   121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
             RD+ T+E AYAAI ++DKV YIN IK +P K ++ A + +  GNI EAE +LLQ GL+++
Sbjct:   635 RDMTTAEIAYAAIGEIDKVQYINSIKDLPSKESKMAHILMFSGNIQEAEMVLLQAGLVYQ 694

Query:   181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
             AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+L+   K ETN+++L+
Sbjct:   695 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQ 744

GO:0060349 "bone morphogenesis" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

MGI|MGI:1915509 Ift80 "intraflagellar transport 80" [Mus musculus (taxid:10090)]

 Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
 Identities = 108/230 (46%), Positives = 166/230 (72%)

Query:     1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
             MV ++ W    NIL  +QD+   VW++P  ++ D+ +L KT+  +D  E+ K+P IVSFV
Sbjct:   508 MVHTLAWCDTCNILCGIQDTRFTVWYYPNTIYVDRDILPKTLYERDASEYSKNPHIVSFV 567

Query:    61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
              N +TIRR DG++++  ISPY ++LH Y +S  W +A+ LCR + +  +WACLA MA  +
Sbjct:   568 GNQVTIRRADGSLVHISISPYPAILHEYVSSSKWEEAVRLCRFVKEQSMWACLAAMAVAN 627

Query:   121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
             RD+ T+E AYAA+ ++DKV YIN IK +P + ++ A + +  GNI EAE++LLQ GL+++
Sbjct:   628 RDMVTAEIAYAAVGEIDKVRYINAIKDLPSRESKMAHILMFSGNIQEAETVLLQAGLVYQ 687

Query:   181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
             AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+LD   K ETN+++L+
Sbjct:   688 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLDTFGKQETNKRYLQ 737

GO:0001649 "osteoblast differentiation" evidence=IGI;IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IMP

GO:0060349 "bone morphogenesis" evidence=IMP

RGD|1312006 Ift80 "intraflagellar transport 80 homolog (Chlamydomonas)" [Rattus norvegicus (taxid:10116)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 108/230 (46%), Positives = 165/230 (71%)

Query:     1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
             MV ++ W    NIL  +QD+   VW++P  V+ D+ +L KT+  +D  E+ K+P IVSFV
Sbjct:   508 MVHTLAWCDTCNILCGLQDTRFTVWYYPNAVYVDRDILPKTLYERDASEYSKNPHIVSFV 567

Query:    61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
              N +T+RR DG++++  ISPY ++LH Y +S  W  A+ LCR + +  LWACLA MA  +
Sbjct:   568 GNQVTVRRADGSLVHISISPYPAILHEYVSSSKWEDAVRLCRFVKEQSLWACLAAMAVAN 627

Query:   121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
             RD+ T+E AYAA+ ++DKV YIN +K +P + ++ A + +  GNI EAE+ILLQ GL+++
Sbjct:   628 RDMVTAEIAYAAVGEIDKVRYINAMKDLPSRESKMAHILMFSGNIQEAETILLQAGLVYQ 687

Query:   181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR 230
             AIQ++I  +NW+RALELA+++KTH+DTVL  R+K+L+   K ETN+++L+
Sbjct:   688 AIQININLYNWERALELAVKYKTHVDTVLAYRQKFLETFGKQETNKRYLQ 737

GO:0001649 "osteoblast differentiation" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005929 "cilium" evidence=ISO

GO:0005932 "microtubule basal body" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA;ISO

GO:0035085 "cilium axoneme" evidence=IEA

GO:0060271 "cilium morphogenesis" evidence=IEA;ISO

GO:0060349 "bone morphogenesis" evidence=IEA;ISO

ZFIN|ZDB-GENE-041212-50 ift80 "intraflagellar transport 80 homolog (Chlamydomonas)" [Danio rerio (taxid:7955)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 112/235 (47%), Positives = 162/235 (68%)

Query:     1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
             MV ++ WN   NIL  +QD+   VW++P+VVF D+ LL KT+  KD  EF + P +VS+V
Sbjct:   508 MVDTMAWNDSANILCGIQDNRFTVWYYPSVVFVDKDLLPKTIFTKDSSEFSRPPQMVSYV 567

Query:    61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
              + +T+RR DG+++   +SPY ++LH Y +S  W  AL +CR   D  LW+CLAG+A  +
Sbjct:   568 GSQVTVRRVDGSLVCTAVSPYPTLLHEYTSSARWEDALRICRFAKDQTLWSCLAGLAVAN 627

Query:   121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
             R+L+T+E AYAAI ++DKV YIN IK +P K +  A + L  G++ EAE+ LLQ  LI+ 
Sbjct:   628 RELSTAEVAYAAIGEIDKVQYINFIKDLPSKDSCLAHILLFSGHVQEAEATLLQANLIYH 687

Query:   181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEV 235
             AIQ+ I  ++WDRALELA+++KTH+DTVL  R K+L +  K ETN++FL+    V
Sbjct:   688 AIQIHINLYSWDRALELAVKYKTHVDTVLAHRHKFLQDFGKQETNKRFLQYSEGV 742

GO:0003674 "molecular_function" evidence=ND

GO:0060026 "convergent extension" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IMP

WB|WBGene00000484 che-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 430 (156.4 bits), Expect = 1.8e-41, Sum P(2) = 1.8e-41
 Identities = 86/235 (36%), Positives = 141/235 (60%)

Query:     1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFV 60
             +V+ + +N   N+L  + +  + VW  P V F D+ LL+K+++ K+IG  GK P + +F 
Sbjct:   506 LVEQLVFNDVTNMLCGISEGKIAVWPLPNVAFHDRNLLQKSLIQKNIGSVGKFPQLANFA 565

Query:    61 KNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYS 120
              N + IR+ DG ++   I P+   L + A+   W QA+ LCR++ +D +WA  AG+A   
Sbjct:   566 GNTIVIRKSDGCLLPTGILPFYGTLITMASQSKWDQAIRLCRSIGNDTMWATFAGLAVLH 625

Query:   121 RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFR 180
             +++   E AYAA+E  +KV  IN IK    K  +QA   +L G +++A+ +L + GL FR
Sbjct:   626 KNMIVMEIAYAALEDDEKVSLINEIKDKTDKETRQAMQVVLTGKLADADVLLERSGLSFR 685

Query:   181 AIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEV 235
             ++ ++I    W RALEL L++K  ++ V+  R+KYL N  + ET+  FL+  SEV
Sbjct:   686 SLMLNIQMFKWKRALELGLKNKQWLEIVMGYREKYLKNCGQKETDPLFLKHMSEV 740

GO:0042384 "cilium assembly" evidence=IMP

GO:0040024 "dauer larval development" evidence=IGI

GO:0006935 "chemotaxis" evidence=IMP

GO:0030512 "negative regulation of transforming growth factor beta receptor signaling pathway" evidence=IGI

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0005198 "structural molecule activity" evidence=IMP

FB|FBgn0032891 Oseg5 "Oseg5" [Drosophila melanogaster (taxid:7227)]

 Score = 387 (141.3 bits), Expect = 3.5e-37, Sum P(2) = 3.5e-37
 Identities = 87/233 (37%), Positives = 130/233 (55%)

Query:     4 SICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNH 63
             +I W ++ NIL  + DS   +W+ P    +D  ++  T +  D  EFGK  +I SF ++ 
Sbjct:   533 AIMWASETNILVGVHDSCYSIWYCPGEGASDPTIIALTTITLDTTEFGKHITIESFEESV 592

Query:    64 LTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDL 123
             LT R   G ++   ++ Y  +LH       W QAL +CR      LWA LA +AT    L
Sbjct:   593 LTFRSA-GALLPVNVNMYCEILHRALLEGQWQQALKICRMGQHSSLWATLAAVATRKHQL 651

Query:   124 ATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLLGGNISEAESILLQHGLIFRAI 182
               SEEAY+A  Q+DKV Y+ H+K + P  A Q AE  L+ G + EAE+ILL    I +A+
Sbjct:   652 QISEEAYSAALQIDKVSYLQHLKALTPSSAEQMAENSLMLGRMLEAETILLHGKKIEQAV 711

Query:   183 QVSILTHNWDRALELALRHKTH----IDTVLYQRKKYLDNLEKIETNEKFLRL 231
              +++  HNW RALE++ +HK      +  VL +R+KYL  L++ E +  +L L
Sbjct:   712 GLALRMHNWRRALEISQKHKGEQPELVPRVLQERRKYLKALQREEWDPLYLPL 764

GO:0042384 "cilium assembly" evidence=ISM;IEP

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0035058 "nonmotile primary cilium assembly" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	244
KOG1524|consensus	737		100.0
KOG3616|consensus	1636		99.97
KOG1538|consensus	1081		99.95
KOG3617|consensus	1416		99.78
KOG2041|consensus	1189		99.7
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	99.65
KOG0292|consensus	1202		99.34
KOG2041|consensus	1189		99.18
KOG3616|consensus	1636		98.94
KOG0276|consensus	794		98.9
KOG2247|consensus	615		98.61
KOG1538|consensus	1081		98.09
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.45
KOG1920|consensus	1265		97.4
KOG3617|consensus	1416		97.04
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.04
PRK11788	389	tetratricopeptide repeat protein; Provisional	97.03
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	96.96
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.83
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.75
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	96.73
KOG1920|consensus	1265		96.72
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	96.71
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.6
PLN03077	857	Protein ECB2; Provisional	96.45
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.17
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	96.16
PLN03218	1060	maturation of RBCL 1; Provisional	96.15
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	96.15
PRK11788	389	tetratricopeptide repeat protein; Provisional	96.12
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	96.1
PRK12370	553	invasion protein regulator; Provisional	96.05
PRK15359	144	type III secretion system chaperone protein SscB;	95.95
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.94
KOG2114|consensus	933		95.94
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	95.68
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	95.66
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	95.62
PRK11189	296	lipoprotein NlpI; Provisional	95.6
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	95.58
TIGR02552	135	LcrH_SycD type III secretion low calcium response	95.44
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	95.33
PLN03218	1060	maturation of RBCL 1; Provisional	95.28
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.98
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	94.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	94.92
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	94.84
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.73
PLN03077	857	Protein ECB2; Provisional	94.56
PRK12370	553	invasion protein regulator; Provisional	94.52
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	94.52
KOG0985|consensus	1666		94.36
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.77
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	93.76
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.65
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	93.4
KOG1840|consensus	508		93.32
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	93.31
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	93.2
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	93.09
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	92.97
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	92.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	92.72
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	92.71
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	92.63
PRK15359	144	type III secretion system chaperone protein SscB;	92.23
KOG1125|consensus	579		92.04
KOG3785|consensus	557		91.67
KOG0276|consensus	794		91.64
KOG2034|consensus	911		91.49
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	91.48
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	91.18
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	91.02
PRK15331	165	chaperone protein SicA; Provisional	90.95
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	90.93
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	90.83
KOG1840|consensus	508		90.78
PRK10370	198	formate-dependent nitrite reductase complex subuni	90.67
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	90.65
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	90.41
PF13371	73	TPR_9: Tetratricopeptide repeat	90.35
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	90.35
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	90.33
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	90.32
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	89.36
KOG0292|consensus	1202		89.3
KOG2114|consensus	933		88.78
KOG0550|consensus	486		88.25
smart00299	140	CLH Clathrin heavy chain repeat homology.	88.22
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	88.1
KOG1155|consensus	559		87.82
KOG2063|consensus	877		87.73
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	87.68
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	87.55
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	86.93
PRK11189	296	lipoprotein NlpI; Provisional	86.91
KOG2280|consensus	829		86.85
KOG2076|consensus	895		86.43
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	86.08
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	86.07
PF12931	284	Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_	85.03
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	84.9
PRK14574	822	hmsH outer membrane protein; Provisional	84.45
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	84.2
PF03983	70	SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR	83.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	83.35
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	82.99
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	82.74
PRK14574	822	hmsH outer membrane protein; Provisional	82.63
PRK10803	263	tol-pal system protein YbgF; Provisional	82.55
TIGR02552	135	LcrH_SycD type III secretion low calcium response	82.36
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	82.26
KOG1129|consensus	478		81.64
KOG0985|consensus	1666		81.31
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	81.23
KOG2076|consensus	895		81.13
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	80.76
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	80.61
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	80.13
KOG3081|consensus	299		80.03

>KOG1524|consensus

Probab=100.00  E-value=3e-55  Score=404.16  Aligned_cols=241  Identities=44%  Similarity=0.762  Sum_probs=237.8

Q ss_pred             CcceeeecCCCceEEEEeCCeEEEEEcCCccccCcccceeeeEeeccCCCCCCCeEEeEeCCEEEEEecCCcEEEeecCc
Q psy11525          1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVINYPISP   80 (244)
Q Consensus         1 ~v~~v~W~~~~~vlv~~~~~~l~vw~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~f~g~~v~~~~~~G~~~~~~~~p   80 (244)
                      ||..++||+.+||||+.+|+.+.|||||+..|+|+++|++|.+++++++||++|++++|.|++|+++|+||.+++++++|
T Consensus       496 mVhtLawndttNiLcglqDt~fsVWy~pn~vyvDrdiLpkTlierdt~efgKnpqIvsFvgNqvtirrsdG~LlpisV~p  575 (737)
T KOG1524|consen  496 MVHTLAWNDTTNILCGLQDTCFSVWYYPNEVYVDRDILPKTLIERDTTEFGKNPQIVSFVGNQVTIRRSDGALLPISVNP  575 (737)
T ss_pred             hhhhhhhccccceeeeeccceEEEEEcCCcceecccccchhheecchhhccCCcceeeeeccEEEEEeccCceEeeeccc
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHH
Q psy11525         81 YISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYL  160 (244)
Q Consensus        81 ~~~~l~~~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~  160 (244)
                      |++.|++|+..++|++|+++||++++.+||++||.+|+.+.++.++|.+|+++++.++|++|++|+.+.+++.++|+..+
T Consensus       576 y~~iL~e~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~mA~~~l  655 (737)
T KOG1524|consen  576 YPEILHEYLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQMAENSL  655 (737)
T ss_pred             cHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCcccHHHHHhcccccccCcc
Q psy11525        161 LGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLRLQSEVIMSGL  240 (244)
Q Consensus       161 ~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~~e~~~~f~~~~~~~~~~~~  240 (244)
                      +.|+..|||.+++++|.+++|+.+...+++|+|||+|+.+|+.+++.||.+|++||+..|++||+++|+++..++|||..
T Consensus       656 ~~G~~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K~~v~~Vl~yR~KyLk~~g~~EtdplyL~~~~~~eiD~i  735 (737)
T KOG1524|consen  656 MLGRMLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHKELVPRVLQYRRKYLKALGREETDPLYLPLVAKEEIDNI  735 (737)
T ss_pred             HhccchhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcccccCchhhhhhhhcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999954


Q ss_pred             c
Q psy11525        241 R  241 (244)
Q Consensus       241 ~  241 (244)
                      +
T Consensus       736 ~  736 (737)
T KOG1524|consen  736 S  736 (737)
T ss_pred             c
Confidence            3

>KOG3616|consensus

Probab=99.97  E-value=3e-31  Score=252.95  Aligned_cols=209  Identities=19%  Similarity=0.295  Sum_probs=182.3

Q ss_pred             CcceeeecCCCceEEEEeCCeEEEEEcCCccccCcccceeeeEeeccCCCCCCCeEEeEeCCEEEEEecCCcEEEee---
Q psy11525          1 MVQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVINYP---   77 (244)
Q Consensus         1 ~v~~v~W~~~~~vlv~~~~~~l~vw~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~f~g~~v~~~~~~G~~~~~~---   77 (244)
                      +|++++|+|-+||+|++++++||+||+|..|                    .+++.+.++|++..+.|..|++-.+.   
T Consensus       377 fcsymqwvp~sdvivaqn~dnl~iwyn~d~p--------------------eqvt~~kikgdv~~l~r~~~kteviv~e~  436 (1636)
T KOG3616|consen  377 FCSYMQWVPGSDVIVAQNGDNLCIWYNIDAP--------------------EQVTMFKIKGDVEALERDADKTEVIVMEG  436 (1636)
T ss_pred             HhhhheeccCcceEEecCCCceEEEecCCcc--------------------hhheeeEecccchhhhcCCCceeEEEeec
Confidence            4899999999999999999999999999988                    78888899999999999878773221   


Q ss_pred             ----cCccHHHHHHH---HHcCCHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhh
Q psy11525         78 ----ISPYISVLHSY---AASHSWPQALSLCRTL----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIK  146 (244)
Q Consensus        78 ----~~p~~~~l~~~---l~~~~~~~A~~~~~~~----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~  146 (244)
                          -..+++.+++|   ++.|+|++|..+.+.+    ++.+||..++++||+++++-+|+|||+++||+.++++|.++.
T Consensus       437 takvayeld~~~iefgaaid~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~  516 (1636)
T KOG3616|consen  437 TAKVAYELDEGLIEFGAAIDDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDIL  516 (1636)
T ss_pred             ceeEEEEecCcceecccccccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence                12678999999   9999999999999886    578999999999999999999999999999999999999999


Q ss_pred             CCCcHH------------HHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCC-chhHHHHHHH
Q psy11525        147 GIPVKA------------AQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKT-HIDTVLYQRK  213 (244)
Q Consensus       147 ~~~~~~------------~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~-~~~~vl~~r~  213 (244)
                      ++.+..            ..+|.++++..+|++||.+|++.+..+.||-||+.|++||+|+.+|+..+. .++.+-.-+-
T Consensus       517 eiadeas~~~ggdgt~fykvra~lail~kkfk~ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~  596 (1636)
T KOG3616|consen  517 EIADEASIEIGGDGTDFYKVRAMLAILEKKFKEAEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYL  596 (1636)
T ss_pred             HHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhHHHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHH
Confidence            886532            458999999999999999999999999999999999999999999999984 4787333334


Q ss_pred             HHHHHcCCcccHHHHH
Q psy11525        214 KYLDNLEKIETNEKFL  229 (244)
Q Consensus       214 ~yl~~~~~~e~~~~f~  229 (244)
                      ++|+.+||+|.....+
T Consensus       597 q~l~dt~qd~ka~elk  612 (1636)
T KOG3616|consen  597 QALMDTGQDEKAAELK  612 (1636)
T ss_pred             HHHHhcCchhhhhhhc
Confidence            4448889988765543

>KOG1538|consensus

Probab=99.95  E-value=2e-27  Score=224.56  Aligned_cols=213  Identities=17%  Similarity=0.197  Sum_probs=180.2

Q ss_pred             cceeeecCCC-ceEEEEeCCeEEEEEcCCccccCcccceeeeEeeccCCCCCCCeEEeEeCCEEEEEecCCcEEEeecCc
Q psy11525          2 VQSICWNTDV-NILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVKNHLTIRRYDGTVINYPISP   80 (244)
Q Consensus         2 v~~v~W~~~~-~vlv~~~~~~l~vw~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~f~g~~v~~~~~~G~~~~~~~~p   80 (244)
                      |+||+||+.. ||||...++.|.|    +++-     .| +..++      -+..+++|.|++++|++  |..+.-..+|
T Consensus       497 ~nSV~wNT~~E~MlcfT~~g~L~V----R~~~-----~P-~h~qk------~~G~VvG~~gsk~FCL~--~~~i~~~evp  558 (1081)
T KOG1538|consen  497 ANSVAWNTQCEDMLCFTGGGYLNV----RAST-----FP-VHRQK------LQGFVVGYNGSKIFCLH--VFSISAVEVP  558 (1081)
T ss_pred             CceEEeeccccceEEEecCCceEE----Eecc-----CC-cchhc------ceEEEEEecCceEEEEE--eeeeeccccc
Confidence            7899999975 8999888999988    4441     01 00011      34468999999999997  6666666789


Q ss_pred             cHHHHHHHHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC-----cHHHHH
Q psy11525         81 YISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP-----VKAAQQ  155 (244)
Q Consensus        81 ~~~~l~~~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~-----~~~~~~  155 (244)
                      +...+++||+.|.|.+|++++|.+.+.++|+.||..||+++++++|+++|.+..|..+++.+-++++..     .++.+.
T Consensus       559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl  638 (1081)
T KOG1538|consen  559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL  638 (1081)
T ss_pred             ccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH
Confidence            999999999999999999999999999999999999999999999999999999999888877776542     356789


Q ss_pred             HHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCCccc-HHHHHhcc
Q psy11525        156 AEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTH-IDTVLYQRKKYLDNLEKIET-NEKFLRLQ  232 (244)
Q Consensus       156 A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~-~~~vl~~r~~yl~~~~~~e~-~~~f~~~~  232 (244)
                      |.++++.|+|.||.++|+++|.-.+|++||.|++|||.|.+..+...+. -+.+++.|+.|..+.++... +|....++
T Consensus       639 A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaG  717 (1081)
T KOG1538|consen  639 ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAG  717 (1081)
T ss_pred             HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhccc
Confidence            9999999999999999999999999999999999999999999887765 57888999999988777544 44444444

>KOG3617|consensus

Probab=99.78  E-value=9.6e-19  Score=169.39  Aligned_cols=144  Identities=17%  Similarity=0.203  Sum_probs=136.5

Q ss_pred             HHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC-cHHHHHHHHHHHcCCHHH
Q psy11525         89 AASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP-VKAAQQAEMYLLGGNISE  167 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~-~~~~~~A~ia~~~G~~~e  167 (244)
                      +..|+++.|++..++++++..|..+|.+|++.++||+|..|..++++++.++.+++.+..+ +.+++.|.+|..+|+.+|
T Consensus       739 vtiG~MD~AfksI~~IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEe  818 (1416)
T KOG3617|consen  739 VTIGSMDAAFKSIQFIKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEE  818 (1416)
T ss_pred             EEeccHHHHHHHHHHHhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHH
Confidence            8899999999999999999999999999999999999999999999999999999999886 567899999999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcC-CchhHHHHHHHHHHHHcCCc-ccHHHHHhcc
Q psy11525        168 AESILLQHGLIFRAIQVSILTHNWDRALELALRHK-THIDTVLYQRKKYLDNLEKI-ETNEKFLRLQ  232 (244)
Q Consensus       168 Ae~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~-~~~~~vl~~r~~yl~~~~~~-e~~~~f~~~~  232 (244)
                      |+.+|.+|.|.|.-.++|+..|+|++|+++|+.++ .|+....+.+++||++.+.. -+.+.|.|.+
T Consensus       819 A~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~  885 (1416)
T KOG3617|consen  819 ALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG  885 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence            99999999999999999999999999999999998 89999999999999998884 5677787775

>KOG2041|consensus

Probab=99.70  E-value=7.4e-17  Score=154.35  Aligned_cols=145  Identities=20%  Similarity=0.224  Sum_probs=123.6

Q ss_pred             HHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHH
Q psy11525         88 YAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISE  167 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~e  167 (244)
                      .++.-..++|.++++--+++.+|+.||+.|+...+|+.||.+|.+++|+..+.+++++..+.+++.++|++..+.|.|+|
T Consensus       673 Lve~vgledA~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee  752 (1189)
T KOG2041|consen  673 LVEAVGLEDAIQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE  752 (1189)
T ss_pred             HHHHhchHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence            46777889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhH-HH--HHH--HHHH-HHcCCcccHHHHHhcc
Q psy11525        168 AESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDT-VL--YQR--KKYL-DNLEKIETNEKFLRLQ  232 (244)
Q Consensus       168 Ae~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~-vl--~~r--~~yl-~~~~~~e~~~~f~~~~  232 (244)
                      ||++|+.+.+-|.||+||..+++|-+.++|-+..+.+.++ .+  +.|  ..|+ +-..++|+.+.|.+..
T Consensus       753 aek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~  823 (1189)
T KOG2041|consen  753 AEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG  823 (1189)
T ss_pred             hhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999986654222 11  111  2222 4445566666555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.65  E-value=2.6e-14  Score=134.65  Aligned_cols=186  Identities=21%  Similarity=0.292  Sum_probs=142.6

Q ss_pred             cceeeecCCCceEEEEeCCeEEEEEcCCccccCcccceeeeEeeccCCCCCCCeEEeEeC--CEEEEEecCCcEEEeecC
Q psy11525          2 VQSICWNTDVNILAAMQDSALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSPSIVSFVK--NHLTIRRYDGTVINYPIS   79 (244)
Q Consensus         2 v~~v~W~~~~~vlv~~~~~~l~vw~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~f~g--~~v~~~~~~G~~~~~~~~   79 (244)
                      |.|..|+.|  +|+..+.++|.  |++.--         +.+.+   .+.+...++++.+  ++|+|...++.+....+.
T Consensus       199 IkSg~W~~d--~fiYtT~~~lk--Yl~~Ge---------~~~i~---~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  199 IKSGCWVED--CFIYTTSNHLK--YLVNGE---------TGIIA---HLDKPLYLLGYLPKENRLYLIDRDGNVISYELD  262 (443)
T ss_dssp             -SEEEEETT--EEEEE-TTEEE--EEETTE---------EEEEE---E-SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred             eEEEEEEcC--EEEEEcCCeEE--EEEcCC---------cceEE---EcCCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence            678999776  88888888554  344311         11111   2445667889999  999999989988666321


Q ss_pred             ----------------------------c------------------cHH--------HHHHH---HHcCCHHHHHHHHh
Q psy11525         80 ----------------------------P------------------YIS--------VLHSY---AASHSWPQALSLCR  102 (244)
Q Consensus        80 ----------------------------p------------------~~~--------~l~~~---l~~~~~~~A~~~~~  102 (244)
                                                  |                  +++        .-++|   |+.|+++.|+++|+
T Consensus       263 ~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~  342 (443)
T PF04053_consen  263 LSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAK  342 (443)
T ss_dssp             HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCC
T ss_pred             HHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHH
Confidence                                        1                  111        11223   99999999999999


Q ss_pred             ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHH
Q psy11525        103 TLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAI  182 (244)
Q Consensus       103 ~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai  182 (244)
                      .++.+..|++||..||..+++++|++||.+.+|++++.+|..+..-.++-..+|.++...|++..|...++-.|++++.+
T Consensus       343 ~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv  422 (443)
T PF04053_consen  343 ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECV  422 (443)
T ss_dssp             CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHH
T ss_pred             hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999888888899999999999999999999999999999


Q ss_pred             HHHHHhcCHHHHHHHHHhcCC
Q psy11525        183 QVSILTHNWDRALELALRHKT  203 (244)
Q Consensus       183 ~m~~~l~~W~~Al~LA~~~~~  203 (244)
                      ++..+.+++.+|.-.|++|+|
T Consensus       423 ~lL~~~~~~~~A~~~A~ty~~  443 (443)
T PF04053_consen  423 DLLIETGRLPEAALFARTYGP  443 (443)
T ss_dssp             HHHHHTT-HHHHHHHHHHTT-
T ss_pred             HHHHHcCCchHHHHHHHhcCC
Confidence            999999999999999999875

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0292|consensus

Probab=99.34  E-value=1.7e-11  Score=120.19  Aligned_cols=165  Identities=18%  Similarity=0.182  Sum_probs=126.6

Q ss_pred             CCCeEEeEeCCEEEEEecCCcEEEeecC---------------------------------------ccHHHHHHH----
Q psy11525         52 KSPSIVSFVKNHLTIRRYDGTVINYPIS---------------------------------------PYISVLHSY----   88 (244)
Q Consensus        52 ~~~~~v~f~g~~v~~~~~~G~~~~~~~~---------------------------------------p~~~~l~~~----   88 (244)
                      +...+...+|+.|+|...+|......+-                                       .|++.-.+|    
T Consensus       567 ~~iyitkv~gn~V~cl~rd~~~~~~~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaYLqKkgypeiAL~FVkD~  646 (1202)
T KOG0292|consen  567 KPIYITKVKGNKVFCLNRDGEIECLTIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAYLQKKGYPEIALHFVKDE  646 (1202)
T ss_pred             cceEEEEeeCCEEEEEecCCCeEEEeechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHHHHhcCCcceeeeeecCc
Confidence            3445667899999999999988544221                                       122222222    


Q ss_pred             -------HHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         89 -------AASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        89 -------l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                             |+.|+.+.|++.|+.++.+..|..||+.||..+|-++||.||.+..+++|+.||.-+..-.++..+++.++..
T Consensus       647 ~tRF~LaLe~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~  726 (1202)
T KOG0292|consen  647 RTRFELALECGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEI  726 (1202)
T ss_pred             chheeeehhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHh
Confidence                   8999999999999999999999999999999999999999999999999999988888877777777777766


Q ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC
Q psy11525        162 GGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEK  221 (244)
Q Consensus       162 ~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~  221 (244)
                      ..+..---+.-+..|+.++-++....-|+-+.|...|..|+.+  +   ..++++++.+.
T Consensus       727 r~D~~~~~qnalYl~dv~ervkIl~n~g~~~laylta~~~G~~--~---~ae~l~ee~~~  781 (1202)
T KOG0292|consen  727 RNDATGQFQNALYLGDVKERVKILENGGQLPLAYLTAAAHGLE--D---QAEKLGEELEK  781 (1202)
T ss_pred             hhhhHHHHHHHHHhccHHHHHHHHHhcCcccHHHHHHhhcCcH--H---HHHHHHHhhcc
Confidence            6555555555566677777777777777888888888888753  3   44555555443

>KOG2041|consensus

Probab=99.18  E-value=3.3e-10  Score=109.37  Aligned_cols=152  Identities=18%  Similarity=0.228  Sum_probs=115.7

Q ss_pred             HHHcCCHHHHHHHHhccC-------CHHH-------------HHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC
Q psy11525         88 YAASHSWPQALSLCRTLN-------DDIL-------------WACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG  147 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~-------~~~l-------------W~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~  147 (244)
                      ++..|+|-+-+++.+.+.       -+..             |...+++....++.+--..||.++++++.++.+-+...
T Consensus       770 r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lp  849 (1189)
T KOG2041|consen  770 RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLP  849 (1189)
T ss_pred             HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcC
Confidence            478899999999999952       1334             55555555555555555556666666665555444333


Q ss_pred             CCcH-HHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcC-CchhHHHHHHHHHH-HHcCCccc
Q psy11525        148 IPVK-AAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHK-THIDTVLYQRKKYL-DNLEKIET  224 (244)
Q Consensus       148 ~~~~-~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~-~~~~~vl~~r~~yl-~~~~~~e~  224 (244)
                      ..++ ...+|.++...|+.++|.+.|++.|.|..|+.-+..|++|.+|.+||+++. +++.++++..+.+| +..+..|+
T Consensus       850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~ea  929 (1189)
T KOG2041|consen  850 EDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEA  929 (1189)
T ss_pred             cccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHH
Confidence            3222 246899999999999999999999999999999999999999999999999 55999998887777 66677899


Q ss_pred             HHHHHhcccccccCc
Q psy11525        225 NEKFLRLQSEVIMSG  239 (244)
Q Consensus       225 ~~~f~~~~~~~~~~~  239 (244)
                      +++.||++.-.+--+
T Consensus       930 Ie~~Rka~~~~daar  944 (1189)
T KOG2041|consen  930 IEKDRKAGRHLDAAR  944 (1189)
T ss_pred             HHHhhhcccchhHHH
Confidence            999999976544333

>KOG3616|consensus

Probab=98.94  E-value=7.9e-09  Score=100.63  Aligned_cols=135  Identities=18%  Similarity=0.254  Sum_probs=111.0

Q ss_pred             cHHHHHHHHHcCCHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHH-----------h
Q psy11525         81 YISVLHSYAASHSWPQALSLCRTL----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINH-----------I  145 (244)
Q Consensus        81 ~~~~l~~~l~~~~~~~A~~~~~~~----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~-----------i  145 (244)
                      +..+..-|-..|+|++|++++..-    .+-+++-.-|+.--++|.+..|++.|..+|.+++.-...+           +
T Consensus       794 ~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv  873 (1636)
T KOG3616|consen  794 FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLV  873 (1636)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHH
Confidence            345667789999999999999773    4667888888899999999999999999999876622221           2


Q ss_pred             hC-----CCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCc--hhHHHHHHHHH
Q psy11525        146 KG-----IPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTH--IDTVLYQRKKY  215 (244)
Q Consensus       146 ~~-----~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~--~~~vl~~r~~y  215 (244)
                      .+     +.+...+.|.-+...|+.++||..|+++|++..|++||++.++|++|+++|++.+..  -+.|++..++-
T Consensus       874 ~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaks  950 (1636)
T KOG3616|consen  874 EKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKS  950 (1636)
T ss_pred             HHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHh
Confidence            11     234557789999999999999999999999999999999999999999999998865  57777776543

>KOG0276|consensus

Probab=98.90  E-value=2.3e-08  Score=95.59  Aligned_cols=129  Identities=16%  Similarity=0.129  Sum_probs=119.5

Q ss_pred             HHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHH
Q psy11525         89 AASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEA  168 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eA  168 (244)
                      |+.|+++.|+++|...+++.-|++||..|+..+++..|.+||.+-.|+..+..+.....-.+.....|..+-..|+.+-|
T Consensus       648 l~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A  727 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA  727 (794)
T ss_pred             hhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchH
Confidence            89999999999999999999999999999999999999999999999999999888877666667789999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCc-hhHHHHHHHHHHH
Q psy11525        169 ESILLQHGLIFRAIQVSILTHNWDRALELALRHKTH-IDTVLYQRKKYLD  217 (244)
Q Consensus       169 e~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~-~~~vl~~r~~yl~  217 (244)
                      .-.|...|++++++++....++..+|--+|+++.+. +..++.+.+.=|.
T Consensus       728 F~~~~l~g~~~~C~~lLi~t~r~peAal~ArtYlps~vs~iv~~wk~~l~  777 (794)
T KOG0276|consen  728 FLAYFLSGDYEECLELLISTQRLPEAALFARTYLPSQVSRIVELWKEDLS  777 (794)
T ss_pred             HHHHHHcCCHHHHHHHHHhcCcCcHHHHHHhhhChHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999976 7777777766663

>KOG2247|consensus

Probab=98.61  E-value=1.9e-08  Score=94.16  Aligned_cols=114  Identities=14%  Similarity=-0.012  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHH
Q psy11525        108 ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSIL  187 (244)
Q Consensus       108 ~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~  187 (244)
                      +.|.+.+..|+...+..+|.+.|+++||..++..|..+...++.+...|.+.-..-.||.|++.+++.+.+..|++|..|
T Consensus         4 ~~~~~~~~~a~~d~~~~~airiyr~ledaalv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le~n~tg~aldm~wD   83 (615)
T KOG2247|consen    4 KVIPCTLTKAQEDFKCVSAIRIYRRLEDAALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILELNPTGKALDMAWD   83 (615)
T ss_pred             cchhhHHHhhhhhccchHHHHHHHHhhhhhccccceeeEecCCCceehhhhhhHHHhhhhhcceecccCCchhHhhhhhc
Confidence            57999999999999999999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCCc
Q psy11525        188 THNWDRALELALRHKTH-IDTVLYQRKKYLDNLEKI  222 (244)
Q Consensus       188 l~~W~~Al~LA~~~~~~-~~~vl~~r~~yl~~~~~~  222 (244)
                      + +||.|+-+|++.++- +-.+-..++.-|+.+|..
T Consensus        84 k-egdvlavlAek~~piylwd~n~eytqqLE~gg~~  118 (615)
T KOG2247|consen   84 K-EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTS  118 (615)
T ss_pred             c-ccchhhhhhhcCCCeeechhhhhhHHHHhccCcc
Confidence            9 999999999999965 555444555555555543

>KOG1538|consensus

Probab=98.09  E-value=2e-05  Score=76.49  Aligned_cols=148  Identities=20%  Similarity=0.193  Sum_probs=103.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhccC---------CHHHHHH-------HHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC
Q psy11525         84 VLHSYAASHSWPQALSLCRTLN---------DDILWAC-------LAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG  147 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~~---------~~~lW~~-------LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~  147 (244)
                      +|.-|-..+.|+.|-++...+.         ....|+.       .|++-+.+|+.+-|...   ++|-+-+..+.+|.+
T Consensus       664 AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i---~~d~gW~d~lidI~r  740 (1081)
T KOG1538|consen  664 ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEI---CGDHGWVDMLIDIAR  740 (1081)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhh---hhcccHHHHHHHHHh
Confidence            3334455566666666665542         2344542       44555555555554433   334445556666654


Q ss_pred             CCcH-----HHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC-
Q psy11525        148 IPVK-----AAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEK-  221 (244)
Q Consensus       148 ~~~~-----~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~-  221 (244)
                      .-++     -...|.-..-+.-+..|.++|.+.|+...-++|....++|++|..||++|..-+++|.+.+.+||.++.+ 
T Consensus       741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrF  820 (1081)
T KOG1538|consen  741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRF  820 (1081)
T ss_pred             hcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhH
Confidence            3221     2345555555667889999999999999999999999999999999999987789999999999977766 


Q ss_pred             cccHHHHHhcccc
Q psy11525        222 IETNEKFLRLQSE  234 (244)
Q Consensus       222 ~e~~~~f~~~~~~  234 (244)
                      +|+-.-|-+++++
T Consensus       821 eEAqkAfhkAGr~  833 (1081)
T KOG1538|consen  821 EEAQKAFHKAGRQ  833 (1081)
T ss_pred             HHHHHHHHHhcch
Confidence            7888889988865

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.45  E-value=0.024  Score=53.92  Aligned_cols=119  Identities=13%  Similarity=0.010  Sum_probs=72.3

Q ss_pred             ccHHHHHHH---HHcCCHHHHHHHHhc--c---CCHHHHHHHHHHHHHcCCHHHHHHH----------HHHhCChhHHHH
Q psy11525         80 PYISVLHSY---AASHSWPQALSLCRT--L---NDDILWACLAGMATYSRDLATSEEA----------YAAIEQVDKVMY  141 (244)
Q Consensus        80 p~~~~l~~~---l~~~~~~~A~~~~~~--~---~~~~lW~~LA~~Al~~~~l~~A~~~----------y~~l~d~~~v~~  141 (244)
                      +++...++|   +-.++++++.+..+.  +   ..+..=..++...-+.|-.++|...          -..+|+.+.+  
T Consensus       260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A--  337 (443)
T PF04053_consen  260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIA--  337 (443)
T ss_dssp             E--HHHHHHHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHH--
T ss_pred             EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHH--
Confidence            568888888   999999996555441  1   1244445556555555555555432          1223333222  


Q ss_pred             HHHhhCCCc--HHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHh
Q psy11525        142 INHIKGIPV--KAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       142 l~~i~~~~~--~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ++-++++++  +-.+.|..|+.+|+++.||+.|.++++++...=+|.-.|+=+.=.++|+.
T Consensus       338 ~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~  398 (443)
T PF04053_consen  338 LEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKI  398 (443)
T ss_dssp             HHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHH
Confidence            233333433  44789999999999999999999999999999999999998775555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920|consensus

Probab=97.40  E-value=0.0011  Score=68.31  Aligned_cols=98  Identities=16%  Similarity=0.131  Sum_probs=80.7

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHH-----HHHHHHHHHcCCHHHHHHHHH-HCCCH
Q psy11525        105 NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKA-----AQQAEMYLLGGNISEAESILL-QHGLI  178 (244)
Q Consensus       105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~-----~~~A~ia~~~G~~~eAe~~~l-~~g~~  178 (244)
                      ..+.+|...|.+....|+++-|..||..+||++.+..+-.-.......     ..++.-+..+|++-||.++.+ .++++
T Consensus       950 ~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen  950 REELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred             HHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence            356788999999999999999999999999999998777655543322     235556678888877777665 56999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHhcC
Q psy11525        179 FRAIQVSILTHNWDRALELALRHK  202 (244)
Q Consensus       179 ~~Ai~m~~~l~~W~~Al~LA~~~~  202 (244)
                      .+|+..+++-..|++|+++|..++
T Consensus      1030 ~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1030 EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             HHHHHHHhhHhHHHHHHHHHHhcc
Confidence            999999999999999999999988

>KOG3617|consensus

Probab=97.04  E-value=0.011  Score=59.47  Aligned_cols=138  Identities=17%  Similarity=0.156  Sum_probs=102.7

Q ss_pred             cCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCH--HHH
Q psy11525         91 SHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNI--SEA  168 (244)
Q Consensus        91 ~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~--~eA  168 (244)
                      .|+.++|-++|+.-.+...=--||++.-..+++.-|..-|.+-.-+.   ..-++-+.++...+.+.+++..|.-  -+|
T Consensus       951 qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs---nAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen  951 QGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFS---NAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred             ccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence            57778888888887777777788999888999988888888755332   2223333455556778888887754  567


Q ss_pred             HHHHHHCC-CHHHHHHHHHHhcCHHHHHHHHHh-------------cCCc-hhHHHHHHHHHHHHcCCcccHHHHHhc
Q psy11525        169 ESILLQHG-LIFRAIQVSILTHNWDRALELALR-------------HKTH-IDTVLYQRKKYLDNLEKIETNEKFLRL  231 (244)
Q Consensus       169 e~~~l~~g-~~~~Ai~m~~~l~~W~~Al~LA~~-------------~~~~-~~~vl~~r~~yl~~~~~~e~~~~f~~~  231 (244)
                      ...|-..| ..++|+++|..-||..+||+||=.             .+.. -..++.+++.|+.+..+-|.+-.|+-.
T Consensus      1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred             HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            88999998 999999999999999999999844             2222 356788889999887776665555433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.04  E-value=0.016  Score=52.81  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=85.6

Q ss_pred             ccHHHHHHHHHcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHH
Q psy11525         80 PYISVLHSYAASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAE  157 (244)
Q Consensus        80 p~~~~l~~~l~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~  157 (244)
                      ++.+++.+.+..|+...|-++....  ..+..|-.--.             +|+..++++.+..+-.-++-|=...-..+
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~-------------aLa~~~~w~eL~~fa~skKsPIGyepFv~  245 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIK-------------ALAENKDWDELEKFAKSKKSPIGYEPFVE  245 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHH-------------HHHhcCCHHHHHHHHhCCCCCCChHHHHH
Confidence            6778899999999999999999874  67788875544             45555555555444333444444456778


Q ss_pred             HHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q psy11525        158 MYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHK  202 (244)
Q Consensus       158 ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~  202 (244)
                      .++-.|..++|....-+... +.-++||..+|+|.+|.+.|.+.+
T Consensus       246 ~~~~~~~~~eA~~yI~k~~~-~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  246 ACLKYGNKKEASKYIPKIPD-EERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HHHHCCCHHHHHHHHHhCCh-HHHHHHHHHCCCHHHHHHHHHHcC
Confidence            88899999999999999888 999999999999999999999887

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=97.03  E-value=0.017  Score=52.53  Aligned_cols=78  Identities=13%  Similarity=0.042  Sum_probs=43.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCC--CHH-------HHHHHHHHhcCHHHHHHHHHhc---CCchhHHHHHHHHHHHHcC
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHG--LIF-------RAIQVSILTHNWDRALELALRH---KTHIDTVLYQRKKYLDNLE  220 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g--~~~-------~Ai~m~~~l~~W~~Al~LA~~~---~~~~~~vl~~r~~yl~~~~  220 (244)
                      ...|.++...|++++|.++|.+.-  .+.       .....|...+++++|++..++.   .++.... ....+.+...|
T Consensus       218 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g  296 (389)
T PRK11788        218 ILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQE  296 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhC
Confidence            346777777888888888777654  221       2245677778888877766542   2332222 33344444444


Q ss_pred             C-cccHHHHHhc
Q psy11525        221 K-IETNEKFLRL  231 (244)
Q Consensus       221 ~-~e~~~~f~~~  231 (244)
                      + .++...|.++
T Consensus       297 ~~~~A~~~l~~~  308 (389)
T PRK11788        297 GPEAAQALLREQ  308 (389)
T ss_pred             CHHHHHHHHHHH
Confidence            3 4444445444

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=96.96  E-value=0.0011  Score=58.27  Aligned_cols=136  Identities=18%  Similarity=0.228  Sum_probs=32.2

Q ss_pred             HHHcCCHHHHHHHHhcc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYL  160 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~  160 (244)
                      +...|++++|+++.+..       .....|..+|..|...++.+.|+.+|.++=..+..        .+....+.+.+ .
T Consensus        18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--------~~~~~~~l~~l-~   88 (280)
T PF13429_consen   18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--------NPQDYERLIQL-L   88 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--------ccccccccccc-c
Confidence            36789999999999432       35789999999999999999999999976433222        11112334444 5


Q ss_pred             HcCCHHHHHHHHHHC-------CCHHHHHHHHHHhcCHHHHHHHHHh--cCC---chhHHHHHHHHHHHHcCCc-ccHHH
Q psy11525        161 LGGNISEAESILLQH-------GLIFRAIQVSILTHNWDRALELALR--HKT---HIDTVLYQRKKYLDNLEKI-ETNEK  227 (244)
Q Consensus       161 ~~G~~~eAe~~~l~~-------g~~~~Ai~m~~~l~~W~~Al~LA~~--~~~---~~~~vl~~r~~yl~~~~~~-e~~~~  227 (244)
                      ..|++++|.+++.++       .....++.++...++|+++.++-++  ..+   .-..++..+..++.+.|+. ++.+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            777888887666543       3344678888899999998777555  222   2346677788888888774 66666


Q ss_pred             HHhcc
Q psy11525        228 FLRLQ  232 (244)
Q Consensus       228 f~~~~  232 (244)
                      |+++-
T Consensus       169 ~~~al  173 (280)
T PF13429_consen  169 YRKAL  173 (280)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.83  E-value=0.054  Score=53.19  Aligned_cols=143  Identities=13%  Similarity=0.030  Sum_probs=75.8

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC---------------------hhHH-HH
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQ---------------------VDKV-MY  141 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d---------------------~~~v-~~  141 (244)
                      ...|++++|....+..     .....|..+|......++++-|..+|.+.-+                     ++.. ..
T Consensus       376 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~  455 (615)
T TIGR00990       376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT  455 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            5666777777665543     3466777777777777777777777654411                     1100 11


Q ss_pred             HHHhhCC-C---cHHHHHHHHHHHcCCHHHHHHHHHHCCCH---------------HHHHHHHHHhcCHHHHHHHHHh--
Q psy11525        142 INHIKGI-P---VKAAQQAEMYLLGGNISEAESILLQHGLI---------------FRAIQVSILTHNWDRALELALR--  200 (244)
Q Consensus       142 l~~i~~~-~---~~~~~~A~ia~~~G~~~eAe~~~l~~g~~---------------~~Ai~m~~~l~~W~~Al~LA~~--  200 (244)
                      +++.... +   +-....|.++...|++++|.+.|.++-..               ..+...+...+++++|+++.++  
T Consensus       456 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl  535 (615)
T TIGR00990       456 FRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL  535 (615)
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            1111111 1   11234677777777777777777663211               1233344556777777777654  


Q ss_pred             -cCCchhHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525        201 -HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       201 -~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~  231 (244)
                       .++.....+......+.+.|+ .|+++.|.++
T Consensus       536 ~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A  568 (615)
T TIGR00990       536 IIDPECDIAVATMAQLLLQQGDVDEALKLFERA  568 (615)
T ss_pred             hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence             233322223333333444444 5666666665

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.75  E-value=0.075  Score=43.33  Aligned_cols=141  Identities=13%  Similarity=0.129  Sum_probs=74.8

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC---------------------hhH-HH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQ---------------------VDK-VM  140 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d---------------------~~~-v~  140 (244)
                      +...|++++|...+...     .+...|..+|......++++.|+..|.+.-.                     ++. ..
T Consensus        41 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~  120 (234)
T TIGR02521        41 YLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQ  120 (234)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence            46666777766665542     2355666666666666666666666543211                     111 01


Q ss_pred             HHHHhhCCC------cHHHHHHHHHHHcCCHHHHHHHHHHCCC-----H---HHHHHHHHHhcCHHHHHHHHHhc---CC
Q psy11525        141 YINHIKGIP------VKAAQQAEMYLLGGNISEAESILLQHGL-----I---FRAIQVSILTHNWDRALELALRH---KT  203 (244)
Q Consensus       141 ~l~~i~~~~------~~~~~~A~ia~~~G~~~eAe~~~l~~g~-----~---~~Ai~m~~~l~~W~~Al~LA~~~---~~  203 (244)
                      .++++....      ......|.++...|++++|.+.|.++-.     +   ..--..+...++|++|++..++.   .+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  200 (234)
T TIGR02521       121 QFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYN  200 (234)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            111211111      1123467778888888888888866411     1   12235667788888887666542   22


Q ss_pred             chhHHHHHHHHHHHHcCCcccHHHH
Q psy11525        204 HIDTVLYQRKKYLDNLEKIETNEKF  228 (244)
Q Consensus       204 ~~~~vl~~r~~yl~~~~~~e~~~~f  228 (244)
                      .....+..........|+.+....+
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~a~~~  225 (234)
T TIGR02521       201 QTAESLWLGIRIARALGDVAAAQRY  225 (234)
T ss_pred             CCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            2223333444445555555544444

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=96.73  E-value=0.054  Score=53.18  Aligned_cols=136  Identities=14%  Similarity=-0.014  Sum_probs=88.6

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcC
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGG  163 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G  163 (244)
                      ...|++++|....+..     .....|..+|......++++.|+.+|.+.=+.        --...+-....|.++...|
T Consensus       342 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g  413 (615)
T TIGR00990       342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKG  413 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcC
Confidence            5688999999888764     34667888898888888998888887764111        0111223356788888889


Q ss_pred             CHHHHHHHHHHCCC--HH------HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525        164 NISEAESILLQHGL--IF------RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       164 ~~~eAe~~~l~~g~--~~------~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~  231 (244)
                      ++++|...|.++=.  |+      .--.++..++++++|+....+   ..+....++......+...|+ .++.+.|.++
T Consensus       414 ~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A  493 (615)
T TIGR00990       414 EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA  493 (615)
T ss_pred             CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99988888876611  11      112345677888888877543   334444555555666666665 5666666665


Q ss_pred             c
Q psy11525        232 Q  232 (244)
Q Consensus       232 ~  232 (244)
                      .
T Consensus       494 l  494 (615)
T TIGR00990       494 I  494 (615)
T ss_pred             H
Confidence            4

>KOG1920|consensus

Probab=96.72  E-value=0.018  Score=59.66  Aligned_cols=79  Identities=18%  Similarity=0.182  Sum_probs=62.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHH----HHcCCcccHHHHHh
Q psy11525        155 QAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYL----DNLEKIETNEKFLR  230 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl----~~~~~~e~~~~f~~  230 (244)
                      .|.-+...+++++|.-+|..+|..++|++-|...++|.+|+.+|.+....-+++.....+-.    ++....|+...-+.
T Consensus       945 ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e 1024 (1265)
T KOG1920|consen  945 YADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLE 1024 (1265)
T ss_pred             HHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHH
Confidence            56677788999999999999999999999999999999999999998876666654433332    44455677777666


Q ss_pred             ccc
Q psy11525        231 LQS  233 (244)
Q Consensus       231 ~~~  233 (244)
                      |.+
T Consensus      1025 ~~s 1027 (1265)
T KOG1920|consen 1025 YLS 1027 (1265)
T ss_pred             Hhc
Confidence            654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=96.71  E-value=0.11  Score=42.22  Aligned_cols=79  Identities=11%  Similarity=0.013  Sum_probs=44.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCCC-------H---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHc
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHGL-------I---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNL  219 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g~-------~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~  219 (244)
                      ...|.++...|++++|.+.|.++-.       +   ...-..+...+++++|.+...+   ..+............+...
T Consensus       103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (234)
T TIGR02521       103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR  182 (234)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence            3467777888888888888877521       1   1123456777888888776654   2222222333344444455


Q ss_pred             CC-cccHHHHHhc
Q psy11525        220 EK-IETNEKFLRL  231 (244)
Q Consensus       220 ~~-~e~~~~f~~~  231 (244)
                      |+ .++...|.++
T Consensus       183 ~~~~~A~~~~~~~  195 (234)
T TIGR02521       183 GQYKDARAYLERY  195 (234)
T ss_pred             CCHHHHHHHHHHH
Confidence            55 4555555554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.60  E-value=0.071  Score=52.58  Aligned_cols=105  Identities=14%  Similarity=0.141  Sum_probs=59.5

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      |...|++++|..+++..     .+...|..+|......++++.|..+|..+-..        -..........|.++...
T Consensus       577 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~  648 (899)
T TIGR02917       577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--------QPDSALALLLLADAYAVM  648 (899)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHc
Confidence            46677777777777664     35677888888888888888777777653110        000111223455666666


Q ss_pred             CCHHHHHHHHHHCCC--------HHHHHHHHHHhcCHHHHHHHHHh
Q psy11525        163 GNISEAESILLQHGL--------IFRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       163 G~~~eAe~~~l~~g~--------~~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      |++++|...|.+.-.        ......++...++|++|+++.+.
T Consensus       649 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  694 (899)
T TIGR02917       649 KNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS  694 (899)
T ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            666666666654311        11224444555555555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN03077 Protein ECB2; Provisional

Probab=96.45  E-value=0.036  Score=56.50  Aligned_cols=142  Identities=15%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhccC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH--HHHHHHHH
Q psy11525         84 VLHSYAASHSWPQALSLCRTLN--DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK--AAQQAEMY  159 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~~--~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~--~~~~A~ia  159 (244)
                      .+.-|...|++++|.++.+.+.  +...|..+.....+.++++.|...|..+..-       .+  .++.  ....-..+
T Consensus       329 Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-------g~--~Pd~~t~~~ll~a~  399 (857)
T PLN03077        329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD-------NV--SPDEITIASVLSAC  399 (857)
T ss_pred             HHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-------CC--CCCceeHHHHHHHH
Confidence            3444577777777777777763  3456777777777777777777777654211       01  1221  11122344


Q ss_pred             HHcCCHHHHHHHHHHCCC---------HHHHHHHHHHhcCHHHHHHHHHhcCC-chhHHHHHHHHHHHHcCCcccHHHHH
Q psy11525        160 LLGGNISEAESILLQHGL---------IFRAIQVSILTHNWDRALELALRHKT-HIDTVLYQRKKYLDNLEKIETNEKFL  229 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~~g~---------~~~Ai~m~~~l~~W~~Al~LA~~~~~-~~~~vl~~r~~yl~~~~~~e~~~~f~  229 (244)
                      ...|++++|.+++-..-+         ...-|+||...+++++|.++-++... .+.+--..=.-|.+.....|+...|+
T Consensus       400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~  479 (857)
T PLN03077        400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFR  479 (857)
T ss_pred             hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence            556788888877754321         12347888888888888888776542 22111112233444445567778888


Q ss_pred             hcccc
Q psy11525        230 RLQSE  234 (244)
Q Consensus       230 ~~~~~  234 (244)
                      ++.+.
T Consensus       480 ~m~~~  484 (857)
T PLN03077        480 QMLLT  484 (857)
T ss_pred             HHHhC
Confidence            77544

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.17  E-value=0.1  Score=52.06  Aligned_cols=152  Identities=11%  Similarity=0.063  Sum_probs=94.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC----hhHHHH---HH---------
Q psy11525         82 ISVLHSYAASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQ----VDKVMY---IN---------  143 (244)
Q Consensus        82 ~~~l~~~l~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d----~~~v~~---l~---------  143 (244)
                      ...+.-|...|++++|.++...+  .+...|..|.....+.++.+.|...|..+..    ++.+-+   +.         
T Consensus       263 n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~  342 (697)
T PLN03081        263 CALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE  342 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchH
Confidence            34556689999999999999887  4567899999999999999999999987742    111111   11         


Q ss_pred             -------HhhCC---CcH--HHHHHHHHHHcCCHHHHHHHHHHCCCHH-----HHHHHHHHhcCHHHHHHHHHhc---C-
Q psy11525        144 -------HIKGI---PVK--AAQQAEMYLLGGNISEAESILLQHGLIF-----RAIQVSILTHNWDRALELALRH---K-  202 (244)
Q Consensus       144 -------~i~~~---~~~--~~~~A~ia~~~G~~~eAe~~~l~~g~~~-----~Ai~m~~~l~~W~~Al~LA~~~---~-  202 (244)
                             .+.+.   ++.  ..-....+...|++++|+++|-+...++     .-|..|...|++++|+++-++.   + 
T Consensus       343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~  422 (697)
T PLN03081        343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV  422 (697)
T ss_pred             HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence                   11100   011  1123445556788888888888765543     4577888888999998887763   2 


Q ss_pred             -CchhHHHHHHHHHHHHcCCcccHHHHHhccc
Q psy11525        203 -THIDTVLYQRKKYLDNLEKIETNEKFLRLQS  233 (244)
Q Consensus       203 -~~~~~vl~~r~~yl~~~~~~e~~~~f~~~~~  233 (244)
                       |..-+....=.-+......++..+.|.++.+
T Consensus       423 ~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~  454 (697)
T PLN03081        423 APNHVTFLAVLSACRYSGLSEQGWEIFQSMSE  454 (697)
T ss_pred             CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence             2222211111222233333566666766643

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=96.16  E-value=0.23  Score=48.04  Aligned_cols=117  Identities=13%  Similarity=0.190  Sum_probs=70.9

Q ss_pred             cceeeecCCCceEEEEeC-CeEEEEEcCCccccCcccc----------eeeeEeecc-------C-----------CCCC
Q psy11525          2 VQSICWNTDVNILAAMQD-SALCVWFFPAVVFADQGLL----------RKTVLLKDI-------G-----------EFGK   52 (244)
Q Consensus         2 v~~v~W~~~~~vlv~~~~-~~l~vw~~~~~~~~~~~~l----------~~~~~~~~~-------~-----------~~~~   52 (244)
                      .+.++|+|++.+|+..++ |.|.+|=..-.+ +.-.++          ..+++-...       .           ..+.
T Consensus       302 P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp-i~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~  380 (545)
T PF11768_consen  302 PTLIAWHPDGAIFVVGSEQGELQCFDMALSP-IKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYAD  380 (545)
T ss_pred             ceEEEEcCCCcEEEEEcCCceEEEEEeecCc-cceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCC
Confidence            467899999988887776 888887322222 111111          111111000       0           0001


Q ss_pred             --CCeEEeEeCCEEEEEecCCcEEEeecCccHHHHHHHHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCH
Q psy11525         53 --SPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDL  123 (244)
Q Consensus        53 --~~~~v~f~g~~v~~~~~~G~~~~~~~~p~~~~l~~~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l  123 (244)
                        .-.++.|.+|=+.|.+-.+...+.+.....+...+||..++.++|.++...+    .|...+.+|...+.-
T Consensus       381 ~~~~L~l~f~~GPl~vl~~~~G~~~~G~l~~~eL~~~yl~~~qi~eAi~lL~sm----nW~~~g~~C~~~L~~  449 (545)
T PF11768_consen  381 TYDLLLLVFERGPLAVLRFKLGVFTRGDLGLVELISQYLRCDQIEEAINLLLSM----NWNTMGEQCFHCLSA  449 (545)
T ss_pred             ccceEEEEEcCCCeEEEEEeeccccCCcccHHHHHHHHHhcCCHHHHHHHHHhC----CccccHHHHHHHHHH
Confidence              1135567777777776444444444445667888999999999999999988    577777776665443

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.15  E-value=0.12  Score=54.25  Aligned_cols=50  Identities=8%  Similarity=0.136  Sum_probs=29.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         84 VLHSYAASHSWPQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      .+.-|...|++++|.++.+.+      .+...|..+...+.+.++++.|.+.|..+
T Consensus       585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM  640 (1060)
T PLN03218        585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM  640 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            333456666666666666554      23456666666666666666666655544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=96.15  E-value=0.26  Score=49.11  Aligned_cols=44  Identities=18%  Similarity=0.039  Sum_probs=30.9

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAA  132 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~  132 (244)
                      +..|++++|....+..     .....|..+|......++++.|..+|.+
T Consensus        87 l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~  135 (656)
T PRK15174         87 LASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQ  135 (656)
T ss_pred             hhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6677777777777664     3456777777777777777777766654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=96.12  E-value=0.11  Score=47.36  Aligned_cols=45  Identities=9%  Similarity=0.065  Sum_probs=27.4

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAA  132 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~  132 (244)
                      ++..|++++|.......     ++...|..+|......++++.|...|.+
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   94 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQN   94 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            45666666666666554     2334566666666666666666665554

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=96.10  E-value=0.31  Score=48.05  Aligned_cols=116  Identities=22%  Similarity=0.234  Sum_probs=68.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------------CChhH
Q psy11525         85 LHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI---------------------EQVDK  138 (244)
Q Consensus        85 l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l---------------------~d~~~  138 (244)
                      ...|+..|++++|.+++..+     .....|..+|......++++.|+.+|.+.                     |++..
T Consensus       438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~  517 (899)
T TIGR02917       438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD  517 (899)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence            34567888888888888765     35678999999999999999999888753                     22211


Q ss_pred             H-HHHHHhhCCC-c---HHHHHHHHHHHcCCHHHHHHHHHHC--------CCHHHHHHHHHHhcCHHHHHHHHHh
Q psy11525        139 V-MYINHIKGIP-V---KAAQQAEMYLLGGNISEAESILLQH--------GLIFRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       139 v-~~l~~i~~~~-~---~~~~~A~ia~~~G~~~eAe~~~l~~--------g~~~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      . ..++++.... +   .....+.++...|++++|...|.+.        .....-...|...+++++|+++.++
T Consensus       518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  592 (899)
T TIGR02917       518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE  592 (899)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            1 2222222211 1   1234566666777777777766553        0011123444555555555555443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK12370 invasion protein regulator; Provisional

Probab=96.05  E-value=0.2  Score=48.70  Aligned_cols=75  Identities=11%  Similarity=0.041  Sum_probs=48.9

Q ss_pred             CCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHHcCCH
Q psy11525         92 HSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLLGGNI  165 (244)
Q Consensus        92 ~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~~G~~  165 (244)
                      +++++|...++..     ++...|..+|......++++.|+.+|.+.-.         +... .+.....|.++...|++
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~---------l~P~~~~a~~~lg~~l~~~G~~  388 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL---------LSPISADIKYYYGWNLFMAGQL  388 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------hCCCCHHHHHHHHHHHHHCCCH
Confidence            4478888887764     4678899999999999999999988865211         1110 11123456666666666


Q ss_pred             HHHHHHHHHC
Q psy11525        166 SEAESILLQH  175 (244)
Q Consensus       166 ~eAe~~~l~~  175 (244)
                      ++|...|.++
T Consensus       389 ~eAi~~~~~A  398 (553)
T PRK12370        389 EEALQTINEC  398 (553)
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=95.95  E-value=0.084  Score=42.13  Aligned_cols=79  Identities=14%  Similarity=0.004  Sum_probs=56.8

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +...|++++|...++..     .....|..+|..+...++++-|..+|.+.-..        --.-.+.....|.++...
T Consensus        34 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         34 SWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHc
Confidence            47889999998877764     46788888999999999999888888763211        111123345678888888


Q ss_pred             CCHHHHHHHHHH
Q psy11525        163 GNISEAESILLQ  174 (244)
Q Consensus       163 G~~~eAe~~~l~  174 (244)
                      |++++|...|.+
T Consensus       106 g~~~eAi~~~~~  117 (144)
T PRK15359        106 GEPGLAREAFQT  117 (144)
T ss_pred             CCHHHHHHHHHH
Confidence            888888777743

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.94  E-value=0.22  Score=49.69  Aligned_cols=153  Identities=12%  Similarity=0.104  Sum_probs=100.4

Q ss_pred             ccHHHHHHHHHcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC----------------------
Q psy11525         80 PYISVLHSYAASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQ----------------------  135 (244)
Q Consensus        80 p~~~~l~~~l~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d----------------------  135 (244)
                      .+...+.-|.+.|++++|.++-..+  .+-..|..|.....++++.+.|...|.++..                      
T Consensus       362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~  441 (697)
T PLN03081        362 ANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL  441 (697)
T ss_pred             ehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc
Confidence            3455666678899999999998886  3556799999999999999999888887543                      


Q ss_pred             hhH-HHHHHHhhC---C-Cc--HHHHHHHHHHHcCCHHHHHHHHHHCCC------HHHHHHHHHHhcCHHHHHHHHHhc-
Q psy11525        136 VDK-VMYINHIKG---I-PV--KAAQQAEMYLLGGNISEAESILLQHGL------IFRAIQVSILTHNWDRALELALRH-  201 (244)
Q Consensus       136 ~~~-v~~l~~i~~---~-~~--~~~~~A~ia~~~G~~~eAe~~~l~~g~------~~~Ai~m~~~l~~W~~Al~LA~~~-  201 (244)
                      ++. .++++.+.+   + ++  ...-+..++...|++++|.++|.+.+.      +...+..|...++++.|...+++. 
T Consensus       442 ~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~  521 (697)
T PLN03081        442 SEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY  521 (697)
T ss_pred             HHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            111 122333321   1 11  223456777788999999999988764      344578888899999998888763 


Q ss_pred             --CCc-hhHHHHHHHHHHHHcCCcccHHHHHhcc
Q psy11525        202 --KTH-IDTVLYQRKKYLDNLEKIETNEKFLRLQ  232 (244)
Q Consensus       202 --~~~-~~~vl~~r~~yl~~~~~~e~~~~f~~~~  232 (244)
                        ++. ...-...-.-|......+++.+.|.++.
T Consensus       522 ~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        522 GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK  555 (697)
T ss_pred             CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence              222 2222223333445544566666666654

>KOG2114|consensus

Probab=95.94  E-value=0.57  Score=47.47  Aligned_cols=171  Identities=13%  Similarity=0.154  Sum_probs=112.5

Q ss_pred             EEEEEecCCcEEEeecCccHHHHHHHHHcCCHHHHHHHHhccC-----CHHHHHHHHHHHHHcCCHHHHHHHHHH-hCCh
Q psy11525         63 HLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLN-----DDILWACLAGMATYSRDLATSEEAYAA-IEQV  136 (244)
Q Consensus        63 ~v~~~~~~G~~~~~~~~p~~~~l~~~l~~~~~~~A~~~~~~~~-----~~~lW~~LA~~Al~~~~l~~A~~~y~~-l~d~  136 (244)
                      ...+.++||.+-...-.++...|.--..++.|..|+.+|+...     .+..-+.-|...-..|+++.|.-=|.+ +|-.
T Consensus       319 ~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l  398 (933)
T KOG2114|consen  319 DCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL  398 (933)
T ss_pred             cEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence            6777888888877777788888888899999999999999853     355667778888888899888887774 3322


Q ss_pred             hHH----------------HHHHHhhCC----CcHHHHHHHHHHHcCCHHHHHHHHHHCC------CHHHHHHHHHHhcC
Q psy11525        137 DKV----------------MYINHIKGI----PVKAAQQAEMYLLGGNISEAESILLQHG------LIFRAIQVSILTHN  190 (244)
Q Consensus       137 ~~v----------------~~l~~i~~~----~~~~~~~A~ia~~~G~~~eAe~~~l~~g------~~~~Ai~m~~~l~~  190 (244)
                      +--                .||+.+.+-    .+.....-.++.-+++.+.=.+.--+..      +.+.|++..++-+=
T Consensus       399 e~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~sny  478 (933)
T KOG2114|consen  399 EPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNY  478 (933)
T ss_pred             ChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhCh
Confidence            211                222222221    1122334456666677665444333333      48888888888888


Q ss_pred             HHHHHHHHHhcCCc---hhHHHHHHH------HHHHHcCCcccHHHHHhccc
Q psy11525        191 WDRALELALRHKTH---IDTVLYQRK------KYLDNLEKIETNEKFLRLQS  233 (244)
Q Consensus       191 W~~Al~LA~~~~~~---~~~vl~~r~------~yl~~~~~~e~~~~f~~~~~  233 (244)
                      .++|..||++++.|   ++.++..-+      +|++.+.-.|+..-..+|++
T Consensus       479 l~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk  530 (933)
T KOG2114|consen  479 LDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGK  530 (933)
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88888888888765   455554444      34455555666666666654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=95.68  E-value=0.11  Score=45.85  Aligned_cols=107  Identities=20%  Similarity=0.251  Sum_probs=83.7

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      .+..|+|.+|....+..     .+...|.-+|....+.|+++-|++.|...        ++-.-..+.....+|..+++.
T Consensus       110 ~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qA--------l~L~~~~p~~~nNlgms~~L~  181 (257)
T COG5010         110 QIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQA--------LELAPNEPSIANNLGMSLLLR  181 (257)
T ss_pred             HHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHH--------HHhccCCchhhhhHHHHHHHc
Confidence            49999999999999886     56889999999999999999999999763        222223344456789999999


Q ss_pred             CCHHHHHHHHHHC---C----CHHHH-HHHHHHhcCHHHHHHHHHhcC
Q psy11525        163 GNISEAESILLQH---G----LIFRA-IQVSILTHNWDRALELALRHK  202 (244)
Q Consensus       163 G~~~eAe~~~l~~---g----~~~~A-i~m~~~l~~W~~Al~LA~~~~  202 (244)
                      |+++.|+.+++++   +    ++... .-.....+++++|-+++.+.-
T Consensus       182 gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         182 GDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             CCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            9999999999875   1    22222 234567789999999988765

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=95.66  E-value=0.21  Score=40.96  Aligned_cols=83  Identities=22%  Similarity=0.213  Sum_probs=65.8

Q ss_pred             HHHHHH----HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHH
Q psy11525         83 SVLHSY----AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAA  153 (244)
Q Consensus        83 ~~l~~~----l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~  153 (244)
                      +.+|.+    .+.|++++|.++-+.+     ....-|-.||...-..+++.-|..||.+....+        .+-+...-
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~--------~ddp~~~~  107 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK--------IDAPQAPW  107 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCchHHH
Confidence            445554    8999999999888775     578999999999999999999999999865321        12344556


Q ss_pred             HHHHHHHHcCCHHHHHHHHH
Q psy11525        154 QQAEMYLLGGNISEAESILL  173 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l  173 (244)
                      ..|.+.+..|+.+.|.+.|.
T Consensus       108 ~ag~c~L~lG~~~~A~~aF~  127 (157)
T PRK15363        108 AAAECYLACDNVCYAIKALK  127 (157)
T ss_pred             HHHHHHHHcCCHHHHHHHHH
Confidence            78899999999999888763

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=95.62  E-value=0.052  Score=38.87  Aligned_cols=76  Identities=17%  Similarity=0.080  Sum_probs=52.3

Q ss_pred             HcCCHHHHHHHHhcc----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         90 ASHSWPQALSLCRTL----N---DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        90 ~~~~~~~A~~~~~~~----~---~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +.|+|++|..+.+.+    +   ....|-.+|....+.++++-|...+.+ .....        ...+.....|.++..+
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~--------~~~~~~~l~a~~~~~l   71 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP--------SNPDIHYLLARCLLKL   71 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH--------CHHHHHHHHHHHHHHT
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC--------CCHHHHHHHHHHHHHh
Confidence            368899999988875    3   346788899999999998888877766 11111        0012233458999999


Q ss_pred             CCHHHHHHHHHH
Q psy11525        163 GNISEAESILLQ  174 (244)
Q Consensus       163 G~~~eAe~~~l~  174 (244)
                      |++++|.+.|.+
T Consensus        72 ~~y~eAi~~l~~   83 (84)
T PF12895_consen   72 GKYEEAIKALEK   83 (84)
T ss_dssp             T-HHHHHHHHHH
T ss_pred             CCHHHHHHHHhc
Confidence            999999988865

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.60  E-value=0.78  Score=40.94  Aligned_cols=46  Identities=13%  Similarity=0.072  Sum_probs=37.5

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      |...|++++|.......     +....|..+|......++++.|..+|.+.
T Consensus        74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A  124 (296)
T PRK11189         74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV  124 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            46789999998755543     56789999999999999999999888764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=95.58  E-value=0.38  Score=50.24  Aligned_cols=144  Identities=13%  Similarity=0.001  Sum_probs=79.1

Q ss_pred             HHcCCHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------------CChhHH-HHH
Q psy11525         89 AASHSWPQALSLCRTL----NDDILWACLAGMATYSRDLATSEEAYAAI---------------------EQVDKV-MYI  142 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l---------------------~d~~~v-~~l  142 (244)
                      ...|++++|....+..    .....|..+|..+++.++++.|+.+|.+.                     |+++.. ..+
T Consensus       520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~  599 (987)
T PRK09782        520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDL  599 (987)
T ss_pred             HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            4788888888777653    23456778888888888888888877432                     222221 112


Q ss_pred             HHhhCC-CcH--HHHHHHHHHHcCCHHHHHHHHHHC-----CCHHHH---HHHHHHhcCHHHHHHHHHh---cCCchhHH
Q psy11525        143 NHIKGI-PVK--AAQQAEMYLLGGNISEAESILLQH-----GLIFRA---IQVSILTHNWDRALELALR---HKTHIDTV  208 (244)
Q Consensus       143 ~~i~~~-~~~--~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~~A---i~m~~~l~~W~~Al~LA~~---~~~~~~~v  208 (244)
                      ++...+ ++.  ....|.++...|++++|+..|.++     +.+..-   -..+.+.+++++|++..++   ..|.-...
T Consensus       600 ~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a  679 (987)
T PRK09782        600 TRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPAL  679 (987)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            222221 111  133566666667777776666553     111100   1245667778887665543   33443444


Q ss_pred             HHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        209 LYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       209 l~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                      ......-+...|+ .++...|+++.
T Consensus       680 ~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        680 IRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5555555566666 35555565553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=95.44  E-value=0.12  Score=39.80  Aligned_cols=80  Identities=23%  Similarity=0.236  Sum_probs=56.5

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYL  160 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~  160 (244)
                      ..++..|++++|.+..+..     .+...|..+|......++++-|..+|.+.-...        ....+.....|.++.
T Consensus        25 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~   96 (135)
T TIGR02552        25 YNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHH
Confidence            3458899999999887664     467899999988888888888888776543211        111223355677888


Q ss_pred             HcCCHHHHHHHHH
Q psy11525        161 LGGNISEAESILL  173 (244)
Q Consensus       161 ~~G~~~eAe~~~l  173 (244)
                      ..|++++|.+.|.
T Consensus        97 ~~g~~~~A~~~~~  109 (135)
T TIGR02552        97 ALGEPESALKALD  109 (135)
T ss_pred             HcCCHHHHHHHHH
Confidence            8888887777664

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=95.33  E-value=0.51  Score=47.05  Aligned_cols=152  Identities=10%  Similarity=-0.148  Sum_probs=92.3

Q ss_pred             cHHHHHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC-----hhH------------
Q psy11525         81 YISVLHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQ-----VDK------------  138 (244)
Q Consensus        81 ~~~~l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d-----~~~------------  138 (244)
                      +.....+.+..|++++|..+++..     .+...+..||...+..++++-|...|.++-.     ...            
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g  124 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK  124 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence            445667779999999999998875     5788999999999999999999998877522     111            


Q ss_pred             -----HHHHHHhhCC-Cc---HHHHHHHHHHHcCCHHHHHHHHHHC-----CCHHH--HHHHHHHhcCHHHHHHHHHhcC
Q psy11525        139 -----VMYINHIKGI-PV---KAAQQAEMYLLGGNISEAESILLQH-----GLIFR--AIQVSILTHNWDRALELALRHK  202 (244)
Q Consensus       139 -----v~~l~~i~~~-~~---~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~~--Ai~m~~~l~~W~~Al~LA~~~~  202 (244)
                           +..+++...+ ++   .....|.++...|++++|...|.+.     +.+..  ..-.+...+++++|+...++.-
T Consensus       125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l  204 (656)
T PRK15174        125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALL  204 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                 1222222222 11   1234567777788888887776432     11111  1223566788888887766521


Q ss_pred             ----CchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        203 ----THIDTVLYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       203 ----~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                          .+...........+.+.|+ .+....|+++.
T Consensus       205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al  239 (656)
T PRK15174        205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESAL  239 (656)
T ss_pred             hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                1111111222333344444 56666666654

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.28  E-value=0.38  Score=50.65  Aligned_cols=53  Identities=19%  Similarity=0.239  Sum_probs=27.7

Q ss_pred             cHHHHHHHHHcCCHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         81 YISVLHSYAASHSWPQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        81 ~~~~l~~~l~~~~~~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      |...+..|...|++++|.++.+.+      .+...|..|-..+.+.++++.|.+.|..+
T Consensus       440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM  498 (1060)
T PLN03218        440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM  498 (1060)
T ss_pred             HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            344444455556666655555443      24455555555555555555555544443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.98  E-value=0.81  Score=48.54  Aligned_cols=144  Identities=15%  Similarity=0.112  Sum_probs=84.9

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC-----hhHH--------------HHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQ-----VDKV--------------MYIN  143 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d-----~~~v--------------~~l~  143 (244)
                      +...|++++|.+..+..     .+...|..+|......++++.|+..|.++-.     ....              ..+.
T Consensus       471 ~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~  550 (1157)
T PRK11447        471 LENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALA  550 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            46789999999988774     3567788899999999999999999886521     1111              0111


Q ss_pred             HhhCCCc-----------------HHHHHHHHHHHcCCHHHHHHHHHHCCCH----HHHHHHHHHhcCHHHHHHHHHh--
Q psy11525        144 HIKGIPV-----------------KAAQQAEMYLLGGNISEAESILLQHGLI----FRAIQVSILTHNWDRALELALR--  200 (244)
Q Consensus       144 ~i~~~~~-----------------~~~~~A~ia~~~G~~~eAe~~~l~~g~~----~~Ai~m~~~l~~W~~Al~LA~~--  200 (244)
                      .+..+..                 .....|..+...|++++|.+++.....-    ...-.++...+++++|++..++  
T Consensus       551 ~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al  630 (1157)
T PRK11447        551 HLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVL  630 (1157)
T ss_pred             HHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            1111110                 0123456667778888888877643221    1123456777888888776554  


Q ss_pred             -cCCchhHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525        201 -HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       201 -~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~  231 (244)
                       ..|.-.+.+......+...|+ .++.+.|.+.
T Consensus       631 ~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~l  663 (1157)
T PRK11447        631 TREPGNADARLGLIEVDIAQGDLAAARAQLAKL  663 (1157)
T ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             334322333333333434444 5555566544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=94.97  E-value=0.12  Score=34.91  Aligned_cols=81  Identities=15%  Similarity=0.068  Sum_probs=54.0

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .+...|++++|.+.+...     .+...|..+|......++++.|..+|...-+..        ..........|.++..
T Consensus         9 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~~~~~   80 (100)
T cd00189           9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CcchhHHHHHHHHHHH
Confidence            346789999999888764     234678888888888888888887776542210        1111233456777777


Q ss_pred             cCCHHHHHHHHHHC
Q psy11525        162 GGNISEAESILLQH  175 (244)
Q Consensus       162 ~G~~~eAe~~~l~~  175 (244)
                      .|++++|...|.++
T Consensus        81 ~~~~~~a~~~~~~~   94 (100)
T cd00189          81 LGKYEEALEAYEKA   94 (100)
T ss_pred             HHhHHHHHHHHHHH
Confidence            77777777776553

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=94.92  E-value=1.8  Score=45.93  Aligned_cols=145  Identities=14%  Similarity=-0.041  Sum_probs=101.1

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC-----hhHHHHHHHh--hCCCc-HHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQ-----VDKVMYINHI--KGIPV-KAAQ  154 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d-----~~~v~~l~~i--~~~~~-~~~~  154 (244)
                      +...++.+.|.+....+     +++..+..++..++..++.+-|++.+.++-.     .........+  ...+. ....
T Consensus        38 ~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~  117 (1157)
T PRK11447         38 GEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ  117 (1157)
T ss_pred             HHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence            48899999999888775     5789999999999999999999999998843     2222211111  11122 2366


Q ss_pred             HHHHHHHcCCHHHHHHHHHHC-----CCHHHHHHHHHH----hcCHHHHHHHHHhc---CCchhHHHHHHHHHHHHcCC-
Q psy11525        155 QAEMYLLGGNISEAESILLQH-----GLIFRAIQVSIL----THNWDRALELALRH---KTHIDTVLYQRKKYLDNLEK-  221 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~-----g~~~~Ai~m~~~----l~~W~~Al~LA~~~---~~~~~~vl~~r~~yl~~~~~-  221 (244)
                      .|.++...|++++|.+.|.+.     .....|++.+..    .++|++|++.-++.   .|....+.....+.+...|+ 
T Consensus       118 ~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~  197 (1157)
T PRK11447        118 QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRR  197 (1157)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCH
Confidence            788999999999999999874     234556655554    49999998877653   24333444455555555555 


Q ss_pred             cccHHHHHhcc
Q psy11525        222 IETNEKFLRLQ  232 (244)
Q Consensus       222 ~e~~~~f~~~~  232 (244)
                      .|+.+.|.++.
T Consensus       198 ~eAl~~l~~~~  208 (1157)
T PRK11447        198 DEGFAVLEQMA  208 (1157)
T ss_pred             HHHHHHHHHHh
Confidence            67778787764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=94.84  E-value=0.37  Score=44.89  Aligned_cols=101  Identities=16%  Similarity=0.044  Sum_probs=70.1

Q ss_pred             HHcCCHHHHHHHHhccC----CHHHHHHH-HHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-Cc----HHHHHHHH
Q psy11525         89 AASHSWPQALSLCRTLN----DDILWACL-AGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PV----KAAQQAEM  158 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~~----~~~lW~~L-A~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~----~~~~~A~i  158 (244)
                      +..|+|+.|.+......    ++.+-..+ |..|.+.++++.|..-|.+..            +. ++    .....|++
T Consensus        95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~------------~~~~~~~~~~~l~~a~l  162 (398)
T PRK10747         95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA------------ELADNDQLPVEITRVRI  162 (398)
T ss_pred             HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH------------hcCCcchHHHHHHHHHH
Confidence            55799999998887652    24444444 555588888887776665532            22 22    12355899


Q ss_pred             HHHcCCHHHHHHHHHHCCC-----H---HHHHHHHHHhcCHHHHHHHHHhc
Q psy11525        159 YLLGGNISEAESILLQHGL-----I---FRAIQVSILTHNWDRALELALRH  201 (244)
Q Consensus       159 a~~~G~~~eAe~~~l~~g~-----~---~~Ai~m~~~l~~W~~Al~LA~~~  201 (244)
                      ++..|++++|.+.+.+.-.     +   ....++|...++|++|+++-.+.
T Consensus       163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l  213 (398)
T PRK10747        163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM  213 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            9999999999998876421     1   35688999999999999555443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.73  E-value=0.48  Score=41.46  Aligned_cols=138  Identities=18%  Similarity=0.159  Sum_probs=72.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc-HHH-
Q psy11525         83 SVLHSYAASHSWPQALSLCRTL-------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV-KAA-  153 (244)
Q Consensus        83 ~~l~~~l~~~~~~~A~~~~~~~-------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~-~~~-  153 (244)
                      ..+.-+...++|+++.++.+.+       .+...|..+|....+.|+.+.|+++|.+.        ++   ..|+ ... 
T Consensus       115 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a--------l~---~~P~~~~~~  183 (280)
T PF13429_consen  115 SALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA--------LE---LDPDDPDAR  183 (280)
T ss_dssp             ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH--------HH---H-TT-HHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HH---cCCCCHHHH
Confidence            3444567888898888876663       35678899999999999998888888752        11   1121 222 


Q ss_pred             -HHHHHHHHcCCHHHHHHHH---HHC----CCHHH-HHHHHHHhcCHHHHHHHHHhc---CCchhHHHHHHHHHHHHcCC
Q psy11525        154 -QQAEMYLLGGNISEAESIL---LQH----GLIFR-AIQVSILTHNWDRALELALRH---KTHIDTVLYQRKKYLDNLEK  221 (244)
Q Consensus       154 -~~A~ia~~~G~~~eAe~~~---l~~----g~~~~-Ai~m~~~l~~W~~Al~LA~~~---~~~~~~vl~~r~~yl~~~~~  221 (244)
                       ..+.+++..|++++|..++   .+.    ...-. --..|..+|+.++|+...++.   ++.--.++......|.+.|+
T Consensus       184 ~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~  263 (280)
T PF13429_consen  184 NALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR  263 (280)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc
Confidence             2344555557777644444   332    22222 246677888888888776552   33334556666777777776


Q ss_pred             c-ccHHHHHhc
Q psy11525        222 I-ETNEKFLRL  231 (244)
Q Consensus       222 ~-e~~~~f~~~  231 (244)
                      . ++....+++
T Consensus       264 ~~~A~~~~~~~  274 (280)
T PF13429_consen  264 KDEALRLRRQA  274 (280)
T ss_dssp             -----------
T ss_pred             ccccccccccc
Confidence            5 444444444

>PLN03077 Protein ECB2; Provisional

Probab=94.56  E-value=0.55  Score=47.98  Aligned_cols=53  Identities=11%  Similarity=0.127  Sum_probs=43.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHhccC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy11525         82 ISVLHSYAASHSWPQALSLCRTLN--DDILWACLAGMATYSRDLATSEEAYAAIE  134 (244)
Q Consensus        82 ~~~l~~~l~~~~~~~A~~~~~~~~--~~~lW~~LA~~Al~~~~l~~A~~~y~~l~  134 (244)
                      ...+.-|...|++++|.++...+.  +...|..+-....+.++++.|...|..+.
T Consensus       226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~  280 (857)
T PLN03077        226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR  280 (857)
T ss_pred             hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            445556789999999999998874  45679999999999999999988888764

>PRK12370 invasion protein regulator; Provisional

Probab=94.52  E-value=1.2  Score=43.49  Aligned_cols=105  Identities=7%  Similarity=-0.077  Sum_probs=72.8

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC-cHHHHHHHHHHHc
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP-VKAAQQAEMYLLG  162 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~-~~~~~~A~ia~~~  162 (244)
                      ...|++++|....+..     +....|..+|......++++.|...|.+.-..         .... .-....+.++...
T Consensus       349 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---------~P~~~~~~~~~~~~~~~~  419 (553)
T PRK12370        349 TIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL---------DPTRAAAGITKLWITYYH  419 (553)
T ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---------CCCChhhHHHHHHHHHhc
Confidence            6789999999988774     45778999999999999999998887763211         1111 1112334556678


Q ss_pred             CCHHHHHHHHHHC------CCHH---HHHHHHHHhcCHHHHHHHHHhcC
Q psy11525        163 GNISEAESILLQH------GLIF---RAIQVSILTHNWDRALELALRHK  202 (244)
Q Consensus       163 G~~~eAe~~~l~~------g~~~---~Ai~m~~~l~~W~~Al~LA~~~~  202 (244)
                      |++++|...|.+.      +.+.   ..-..+..+|+.++|.+...+..
T Consensus       420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~  468 (553)
T PRK12370        420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS  468 (553)
T ss_pred             cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence            9999998888653      2222   12345567899999999887754

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=94.52  E-value=1.6  Score=34.38  Aligned_cols=86  Identities=16%  Similarity=0.040  Sum_probs=53.8

Q ss_pred             HHHHHHHcCCHHHHHHHHhcc-----CC---HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHH
Q psy11525         84 VLHSYAASHSWPQALSLCRTL-----ND---DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQ  155 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~-----~~---~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~  155 (244)
                      .+...+..+++..+-..+..+     .+   ..-+-.+|..++..++++-|...|..+-+-..=..+..+     -..+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~-----a~l~L   91 (145)
T PF09976_consen   17 QALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL-----ARLRL   91 (145)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH-----HHHHH
Confidence            344446788888887755444     22   344556778888888888888888764432100111111     12467


Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q psy11525        156 AEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       156 A~ia~~~G~~~eAe~~~l~  174 (244)
                      |.+.+..|++++|...+-.
T Consensus        92 A~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHh
Confidence            8888888888888888754

>KOG0985|consensus

Probab=94.36  E-value=0.52  Score=48.90  Aligned_cols=49  Identities=16%  Similarity=0.223  Sum_probs=45.6

Q ss_pred             HcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhH
Q psy11525         90 ASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDK  138 (244)
Q Consensus        90 ~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~  138 (244)
                      .-+..++|+.+|...+++..|.+||++-|+.+.+..|...|.+-.|++.
T Consensus      1087 ~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~ 1135 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSN 1135 (1666)
T ss_pred             HhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHH
Confidence            3578999999999999999999999999999999999999999999763

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.77  E-value=1.2  Score=34.79  Aligned_cols=113  Identities=12%  Similarity=0.112  Sum_probs=71.7

Q ss_pred             ccHHHHHHHHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHH-hhCCCcHHHHHHHH
Q psy11525         80 PYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINH-IKGIPVKAAQQAEM  158 (244)
Q Consensus        80 p~~~~l~~~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~-i~~~~~~~~~~A~i  158 (244)
                      |.+..+..|.+.+.....+.+.+.+....   . +..++    .+....+|+....-..+.+++. -...  .....+.+
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~---~-~~~~~----~~~li~ly~~~~~~~ll~~l~~~~~~y--d~~~~~~~   78 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKLN---S-ENPAL----QTKLIELYAKYDPQKEIERLDNKSNHY--DIEKVGKL   78 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHccC---c-cchhH----HHHHHHHHHHHCHHHHHHHHHhccccC--CHHHHHHH
Confidence            44556666677788888888888753221   0 12222    2334455666555555666662 1111  12345667


Q ss_pred             HHHcCCHHHHHHHHHHCCCHHHHHHHHHHh-cCHHHHHHHHHhcC
Q psy11525        159 YLLGGNISEAESILLQHGLIFRAIQVSILT-HNWDRALELALRHK  202 (244)
Q Consensus       159 a~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l-~~W~~Al~LA~~~~  202 (244)
                      +...|.+++|.-+|.+.|....|++...+. ++.+.|++.|++.+
T Consensus        79 c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~  123 (140)
T smart00299       79 CEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQN  123 (140)
T ss_pred             HHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCC
Confidence            777778888888888888888888888776 77888888888744

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=93.76  E-value=0.35  Score=44.56  Aligned_cols=82  Identities=11%  Similarity=0.066  Sum_probs=60.7

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYL  160 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~  160 (244)
                      ......|+|++|....+..     .....|..+|...+..++++.|..+|.+.=+.+        -.......++|.++.
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--------P~~~~a~~~lg~~~~   81 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD--------PSLAKAYLRKGTACM   81 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHH
Confidence            3457889999999988774     567899999999999999998888875532111        111223456788889


Q ss_pred             HcCCHHHHHHHHHHC
Q psy11525        161 LGGNISEAESILLQH  175 (244)
Q Consensus       161 ~~G~~~eAe~~~l~~  175 (244)
                      .+|+|++|...|.++
T Consensus        82 ~lg~~~eA~~~~~~a   96 (356)
T PLN03088         82 KLEEYQTAKAALEKG   96 (356)
T ss_pred             HhCCHHHHHHHHHHH
Confidence            999999999988654

>TIGR00540 hemY_coli hemY protein

Probab=93.65  E-value=2.1  Score=39.91  Aligned_cols=104  Identities=13%  Similarity=0.024  Sum_probs=64.3

Q ss_pred             HHcCCHHHHHHHHhcc----CC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH--HHHHHHHHHH
Q psy11525         89 AASHSWPQALSLCRTL----ND-DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK--AAQQAEMYLL  161 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~----~~-~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~--~~~~A~ia~~  161 (244)
                      +..|+|+.|.+.....    +. ....-..|+.|.+.++.+.|...|.+.        .+. ......  ....|++++.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a--------~~~-~p~~~l~~~~~~a~l~l~  165 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEA--------AEL-AGNDNILVEIARTRILLA  165 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--------HHh-CCcCchHHHHHHHHHHHH
Confidence            6678888888877654    11 222345566677777777777666552        111 111111  2235888888


Q ss_pred             cCCHHHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHhc
Q psy11525        162 GGNISEAESILLQH-----GLIF---RAIQVSILTHNWDRALELALRH  201 (244)
Q Consensus       162 ~G~~~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~~  201 (244)
                      .|+++.|.+.+.+-     +++.   .+..++...++|++|+++..+.
T Consensus       166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l  213 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM  213 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99998887776552     2222   4578888899999887776553

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=93.40  E-value=0.77  Score=36.30  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=54.3

Q ss_pred             HHHcCCHHHHHHHHhccC----C----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTLN----D----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMY  159 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~----~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia  159 (244)
                      ++..|++++|....+.+.    +    ...+-.||...+..++++-|...+..+.+-..-         +......|.++
T Consensus        58 ~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~---------~~~~~~~Gdi~  128 (145)
T PF09976_consen   58 AYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFK---------ALAAELLGDIY  128 (145)
T ss_pred             HHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchH---------HHHHHHHHHHH
Confidence            488999999999887752    1    235666777777777777776666443221111         11245689999


Q ss_pred             HHcCCHHHHHHHHHHC
Q psy11525        160 LLGGNISEAESILLQH  175 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~~  175 (244)
                      +-.|++++|...|.++
T Consensus       129 ~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  129 LAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHCCCHHHHHHHHHHh
Confidence            9999999999988763

>KOG1840|consensus

Probab=93.32  E-value=0.58  Score=45.36  Aligned_cols=140  Identities=15%  Similarity=0.106  Sum_probs=85.8

Q ss_pred             HHHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-----
Q psy11525         87 SYAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-----  148 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-----  148 (244)
                      -|...|+|.+|...|+..             .....-..++.......+++.|..-|++..     ..+.+.-..     
T Consensus       292 ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al-----~i~~~~~g~~~~~~  366 (508)
T KOG1840|consen  292 LYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL-----KIYLDAPGEDNVNL  366 (508)
T ss_pred             HHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-----HHHHhhccccchHH
Confidence            378999999999988774             235667777888888888999998888432     222222221     


Q ss_pred             CcHHHHHHHHHHHcCCHHHHHHHHHHC--------C--CHHHHH------HHHHHhcCH-------HHHHHHHHhcCCch
Q psy11525        149 PVKAAQQAEMYLLGGNISEAESILLQH--------G--LIFRAI------QVSILTHNW-------DRALELALRHKTHI  205 (244)
Q Consensus       149 ~~~~~~~A~ia~~~G~~~eAe~~~l~~--------g--~~~~Ai------~m~~~l~~W-------~~Al~LA~~~~~~~  205 (244)
                      ......+|.++...|+|+||+++|.++        |  ++.-++      ..|-++.+.       ++|..+.+.-++.-
T Consensus       367 a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~  446 (508)
T KOG1840|consen  367 AKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDH  446 (508)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCC
Confidence            123467999999999999999999775        1  111110      112233332       34444444444332


Q ss_pred             hHHHHHH---HHHHHHcCCcccHHHHHhc
Q psy11525        206 DTVLYQR---KKYLDNLEKIETNEKFLRL  231 (244)
Q Consensus       206 ~~vl~~r---~~yl~~~~~~e~~~~f~~~  231 (244)
                      .++.+-+   ..-+...|..|.+..|...
T Consensus       447 ~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~  475 (508)
T KOG1840|consen  447 PDVTYTYLNLAALYRAQGNYEAAEELEEK  475 (508)
T ss_pred             CchHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            2223233   3333778888888887765

>TIGR00540 hemY_coli hemY protein

Probab=93.31  E-value=4.7  Score=37.55  Aligned_cols=112  Identities=14%  Similarity=0.004  Sum_probs=71.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH-HHHHHHHHHHcCCHHHHHHHHHH----CCCHHH-----H
Q psy11525        112 CLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK-AAQQAEMYLLGGNISEAESILLQ----HGLIFR-----A  181 (244)
Q Consensus       112 ~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~-~~~~A~ia~~~G~~~eAe~~~l~----~g~~~~-----A  181 (244)
                      .-|..++..|+++.|++...+.-+         ....+.. ....|+++...|++++|.+.|.+    .+....     .
T Consensus        89 ~~glla~~~g~~~~A~~~l~~~~~---------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~  159 (409)
T TIGR00540        89 EEALLKLAEGDYAKAEKLIAKNAD---------HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR  159 (409)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHhh---------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence            346778889999999988744211         1111112 35678999999999999999988    344332     3


Q ss_pred             HHHHHHhcCHHHHHHHHHhc---CCchhHHHHHHHHHH-HHcCCcccHHHHHhcc
Q psy11525        182 IQVSILTHNWDRALELALRH---KTHIDTVLYQRKKYL-DNLEKIETNEKFLRLQ  232 (244)
Q Consensus       182 i~m~~~l~~W~~Al~LA~~~---~~~~~~vl~~r~~yl-~~~~~~e~~~~f~~~~  232 (244)
                      .+++...+++++|++.++..   .|+-..++.....-+ +.....+..+.+.+..
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~  214 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA  214 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            67777889999999887663   344344554444444 4444454555554443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=93.20  E-value=4.6  Score=34.03  Aligned_cols=48  Identities=19%  Similarity=0.060  Sum_probs=38.5

Q ss_pred             HHHHHcCCHHHHHHHHhcc----C-C---HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         86 HSYAASHSWPQALSLCRTL----N-D---DILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~----~-~---~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      ..++..|+|++|....+.+    . +   ...|-.+|......++++.|...|...
T Consensus        41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~   96 (235)
T TIGR03302        41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF   96 (235)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3458999999999988764    1 1   256788999999999999999988865

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=93.09  E-value=0.32  Score=32.68  Aligned_cols=47  Identities=9%  Similarity=0.138  Sum_probs=41.2

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      .++..|+|++|.+..+.+     .....|..+|......++++-|...|.+.
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            468999999999999886     47899999999999999999999988864

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=92.97  E-value=0.25  Score=33.33  Aligned_cols=46  Identities=13%  Similarity=0.079  Sum_probs=39.6

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE  134 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~  134 (244)
                      ++.|+|++|.++.+..     .+...|..+|...++.++++-|+..+.++-
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6789999999999885     578999999999999999999998887654

...

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=92.96  E-value=0.38  Score=32.62  Aligned_cols=62  Identities=15%  Similarity=0.109  Sum_probs=45.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcC-CHHHHHHHHHHC
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGG-NISEAESILLQH  175 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G-~~~eAe~~~l~~  175 (244)
                      +...|..+|......++++.|+.+|.+.=+.+        .+.......+|.+...+| ++++|.+.|.++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            45789999999999999999999998632211        111123356888999999 688888877653

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=92.72  E-value=7.5  Score=40.88  Aligned_cols=144  Identities=14%  Similarity=-0.069  Sum_probs=72.7

Q ss_pred             HHcCCHHHHHHHHhcc--CCHHHHHHH--HHHHHHcCCHHHHHHHHHHhCCh--------------------hH-HHHHH
Q psy11525         89 AASHSWPQALSLCRTL--NDDILWACL--AGMATYSRDLATSEEAYAAIEQV--------------------DK-VMYIN  143 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~--~~~~lW~~L--A~~Al~~~~l~~A~~~y~~l~d~--------------------~~-v~~l~  143 (244)
                      +..++.++|.......  ..+..|..+  |......++++.|+.+|.++...                    .. ..+++
T Consensus       487 l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~  566 (987)
T PRK09782        487 YRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQ  566 (987)
T ss_pred             HHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4458888888833331  122355554  55557899999999999765331                    11 12222


Q ss_pred             HhhCC-CcHHHHHHHHHHHc---CCHHHHHHHHHHCCC--H-----HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHH
Q psy11525        144 HIKGI-PVKAAQQAEMYLLG---GNISEAESILLQHGL--I-----FRAIQVSILTHNWDRALELALR---HKTHIDTVL  209 (244)
Q Consensus       144 ~i~~~-~~~~~~~A~ia~~~---G~~~eAe~~~l~~g~--~-----~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl  209 (244)
                      ..... ++.....+.++...   |++++|...|.++=.  |     ...-.++..++++++|+....+   .+|.-....
T Consensus       567 qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~  646 (987)
T PRK09782        567 QAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQ  646 (987)
T ss_pred             HHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            22222 11111222233333   666666666655421  1     0112345666777776654433   344433444


Q ss_pred             HHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        210 YQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       210 ~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                      ......|.+.|+ .++.+.|+++.
T Consensus       647 ~nLG~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        647 AALGYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH
Confidence            444444555554 45556666553

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=92.71  E-value=1.6  Score=44.18  Aligned_cols=120  Identities=18%  Similarity=0.142  Sum_probs=81.0

Q ss_pred             HHHHcCCHHHHHHHHhccCCH--------------------HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhh
Q psy11525         87 SYAASHSWPQALSLCRTLNDD--------------------ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIK  146 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~~~~--------------------~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~  146 (244)
                      -+++.+++++|.+.+..+...                    ..+..+|......++++-|+.+|..+-.        ..-
T Consensus       319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--------~~P  390 (765)
T PRK10049        319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--------NAP  390 (765)
T ss_pred             HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCC
Confidence            458999999999997765221                    2346788888888999988888654211        111


Q ss_pred             CCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCH---------HHHHHHHHHhcCHHHHHHHHHhc---CCchhHHHHHHHH
Q psy11525        147 GIPVKAAQQAEMYLLGGNISEAESILLQHGLI---------FRAIQVSILTHNWDRALELALRH---KTHIDTVLYQRKK  214 (244)
Q Consensus       147 ~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~---------~~Ai~m~~~l~~W~~Al~LA~~~---~~~~~~vl~~r~~  214 (244)
                      ...+.....|.++...|++++|++.|.++-..         ..|+ .+..+++|++|..+....   .|.-..+..+.+.
T Consensus       391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~-~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~  469 (765)
T PRK10049        391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW-TALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA  469 (765)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH-HHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            11122356788999999999999999886442         3344 788999999999887653   2333344444444


Q ss_pred             H
Q psy11525        215 Y  215 (244)
Q Consensus       215 y  215 (244)
                      +
T Consensus       470 ~  470 (765)
T PRK10049        470 R  470 (765)
T ss_pred             H
Confidence            4

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=92.63  E-value=1.1  Score=36.21  Aligned_cols=98  Identities=14%  Similarity=0.086  Sum_probs=59.2

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL-----N---DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAE  157 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~---~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~  157 (244)
                      ..+...|++++|....+..     +   ....|..+|......++++.|..+|.+.-..        -....+.....|.
T Consensus        43 ~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--------~~~~~~~~~~la~  114 (168)
T CHL00033         43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--------NPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHH
Confidence            3357889999999887664     2   2247999999999999999999988653211        0111122234455


Q ss_pred             HHHHcCCHHHHHHHHHHCCCHHHHHHHHH-HhcCHHHHHHH
Q psy11525        158 MYLLGGNISEAESILLQHGLIFRAIQVSI-LTHNWDRALEL  197 (244)
Q Consensus       158 ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~-~l~~W~~Al~L  197 (244)
                      ++...|+      .+.+.|+++.|+..+. .+..|++|+.+
T Consensus       115 i~~~~~~------~~~~~g~~~~A~~~~~~a~~~~~~a~~~  149 (168)
T CHL00033        115 ICHYRGE------QAIEQGDSEIAEAWFDQAAEYWKQAIAL  149 (168)
T ss_pred             HHHHhhH------HHHHcccHHHHHHHHHHHHHHHHHHHHh
Confidence            5554443      3345666666665553 23445555543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=92.23  E-value=2.5  Score=33.51  Aligned_cols=94  Identities=6%  Similarity=-0.132  Sum_probs=60.6

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525         96 QALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus        96 ~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      ..++-+...+.+ .|..+|..+.+.++++-|..+|.+.=+         +.. ..+-....|.++...|++++|...|-+
T Consensus        14 ~~~~~al~~~p~-~~~~~g~~~~~~g~~~~A~~~~~~al~---------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~   83 (144)
T PRK15359         14 DILKQLLSVDPE-TVYASGYASWQEGDYSRAVIDFSWLVM---------AQPWSWRAHIALAGTWMMLKEYTTAINFYGH   83 (144)
T ss_pred             HHHHHHHHcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH---------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            344444445443 377889999999999999888876211         111 112335689999999999999998877


Q ss_pred             CCC-----HH---HHHHHHHHhcCHHHHHHHHH
Q psy11525        175 HGL-----IF---RAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       175 ~g~-----~~---~Ai~m~~~l~~W~~Al~LA~  199 (244)
                      +-.     ++   ..-..+..+|+.++|+....
T Consensus        84 Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~  116 (144)
T PRK15359         84 ALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ  116 (144)
T ss_pred             HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            632     11   11234567778877765443

>KOG1125|consensus

Probab=92.04  E-value=0.21  Score=48.39  Aligned_cols=84  Identities=21%  Similarity=0.213  Sum_probs=63.4

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCh--hHHHHHHHhhCCCcHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQV--DKVMYINHIKGIPVKAAQQAEMYL  160 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~--~~v~~l~~i~~~~~~~~~~A~ia~  160 (244)
                      |--+|.|++|+..-+..     ++..+|.+||..--...+-..|..+|.+.-+.  ..|+          -.-.+|..++
T Consensus       440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR----------~RyNlgIS~m  509 (579)
T KOG1125|consen  440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR----------VRYNLGISCM  509 (579)
T ss_pred             HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee----------eehhhhhhhh
Confidence            45688999988877663     57899999999888888899999999875431  1111          1124788999


Q ss_pred             HcCCHHHHHHHHHHCCCHHHHHHHHHH
Q psy11525        161 LGGNISEAESILLQHGLIFRAIQVSIL  187 (244)
Q Consensus       161 ~~G~~~eAe~~~l~~g~~~~Ai~m~~~  187 (244)
                      -+|.|+||.++|+.      ||.|...
T Consensus       510 NlG~ykEA~~hlL~------AL~mq~k  530 (579)
T KOG1125|consen  510 NLGAYKEAVKHLLE------ALSMQRK  530 (579)
T ss_pred             hhhhHHHHHHHHHH------HHHhhhc
Confidence            99999999999986      5666554

>KOG3785|consensus

Probab=91.67  E-value=2.9  Score=39.00  Aligned_cols=132  Identities=14%  Similarity=0.123  Sum_probs=82.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhh-CCCc----
Q psy11525         84 VLHSYAASHSWPQALSLCRTLN--------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIK-GIPV----  150 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~~--------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~-~~~~----  150 (244)
                      .|..||..++|..|..+.++-.        +-.+|-               ..||.++||+..+-...... +.++    
T Consensus        28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWi---------------a~C~fhLgdY~~Al~~Y~~~~~~~~~~~e   92 (557)
T KOG3785|consen   28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWI---------------AHCYFHLGDYEEALNVYTFLMNKDDAPAE   92 (557)
T ss_pred             hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHH---------------HHHHHhhccHHHHHHHHHHHhccCCCCcc
Confidence            3889999999999999987731        223453               46888999987664333322 2211    


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHH----HhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCcccHH
Q psy11525        151 KAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSI----LTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNE  226 (244)
Q Consensus       151 ~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~----~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~~e~~~  226 (244)
                      .....|...-++|.|.||+.+--++.+-..-+++..    .+++=++-+.+-....-..++-|.+..-+.+...-.|+++
T Consensus        93 l~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAId  172 (557)
T KOG3785|consen   93 LGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAID  172 (557)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            235688899999999999999999988777666543    3455444444444333223333333333334444445555


Q ss_pred             HHHh
Q psy11525        227 KFLR  230 (244)
Q Consensus       227 ~f~~  230 (244)
                      .|+.
T Consensus       173 vYkr  176 (557)
T KOG3785|consen  173 VYKR  176 (557)
T ss_pred             HHHH
Confidence            5544

>KOG0276|consensus

Probab=91.64  E-value=14  Score=36.83  Aligned_cols=53  Identities=19%  Similarity=0.122  Sum_probs=41.9

Q ss_pred             cHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHH---HHHHHHhcC
Q psy11525        150 VKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDR---ALELALRHK  202 (244)
Q Consensus       150 ~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~---Al~LA~~~~  202 (244)
                      .|-.+.|..++..|++..|++.|.++.++.-.+=++...|+=+-   +-.+|++.+
T Consensus       667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g  722 (794)
T KOG0276|consen  667 VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQG  722 (794)
T ss_pred             HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence            35567899999999999999999999999999999999888773   333444444

>KOG2034|consensus

Probab=91.49  E-value=3.5  Score=42.21  Aligned_cols=145  Identities=17%  Similarity=0.204  Sum_probs=94.1

Q ss_pred             HHHHHHHcCCHHHHHHHHhccC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhCC-hhHH---------------H-----
Q psy11525         84 VLHSYAASHSWPQALSLCRTLN--DDILWACLAGMATYSRDLATSEEAYAAIEQ-VDKV---------------M-----  140 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~~--~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d-~~~v---------------~-----  140 (244)
                      .=.-||+.|+|+.|.++|+.-+  -+..-..=|..+.+.+++..|..+|+..-. +.-|               -     
T Consensus       364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaLKFl~~~~~~~L~~~L~KKL  443 (911)
T KOG2034|consen  364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVALKFLEINQERALRTFLDKKL  443 (911)
T ss_pred             HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3344799999999999999863  366777889999999999999999997632 1100               1     


Q ss_pred             ---------------------HHHHhhCCC--cHH-----------------------------HHHHHHHHHcCCHHHH
Q psy11525        141 ---------------------YINHIKGIP--VKA-----------------------------AQQAEMYLLGGNISEA  168 (244)
Q Consensus       141 ---------------------~l~~i~~~~--~~~-----------------------------~~~A~ia~~~G~~~eA  168 (244)
                                           +|.++..+.  ++.                             .-.-.++...|+.+++
T Consensus       444 ~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~l  523 (911)
T KOG2034|consen  444 DRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEEL  523 (911)
T ss_pred             hhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHH
Confidence                                 122222221  000                             0023456667777777


Q ss_pred             HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCcccHHHHHh
Q psy11525        169 ESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETNEKFLR  230 (244)
Q Consensus       169 e~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~~e~~~~f~~  230 (244)
                      -..-.--++++.-+--+++-+.|++||+.-.+...  .++.+...--|-..-..++.....+
T Consensus       524 l~fA~l~~d~~~vv~~~~q~e~yeeaLevL~~~~~--~el~yk~ap~Li~~~p~~tV~~wm~  583 (911)
T KOG2034|consen  524 LQFANLIKDYEFVVSYWIQQENYEEALEVLLNQRN--PELFYKYAPELITHSPKETVSAWMA  583 (911)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhhHHHhhhHHHhcCcHHHHHHHHH
Confidence            76666667778888888888999999888777643  2555555555544445555544443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=91.48  E-value=2.2  Score=43.03  Aligned_cols=110  Identities=9%  Similarity=0.009  Sum_probs=63.6

Q ss_pred             HHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCC---------HHHHHHHHHHh
Q psy11525        118 TYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGL---------IFRAIQVSILT  188 (244)
Q Consensus       118 l~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~---------~~~Ai~m~~~l  188 (244)
                      ..++...++..+..++.     .+.++..+..+-....|.+...+|+++||+.++..+-.         ... ......+
T Consensus        60 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~-a~~L~~~  133 (694)
T PRK15179         60 ERHAAVHKPAAALPELL-----DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILM-LRGVKRQ  133 (694)
T ss_pred             HHhhhhcchHhhHHHHH-----HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHH-HHHHHHh
Confidence            33444444444444433     23334334444456677777788888888777766521         122 2334567


Q ss_pred             cCHHHHHHHHHhc---CCchhHHHHHHHHHHHHcCC-cccHHHHHhccc
Q psy11525        189 HNWDRALELALRH---KTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQS  233 (244)
Q Consensus       189 ~~W~~Al~LA~~~---~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~~  233 (244)
                      ++.|+|+..|++.   +++--+.+..+..-|.+.|+ +|+++.|+++..
T Consensus       134 ~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~  182 (694)
T PRK15179        134 QGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR  182 (694)
T ss_pred             ccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            7777777777663   34445556666777777776 466777777653

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=91.18  E-value=1.5  Score=29.25  Aligned_cols=59  Identities=17%  Similarity=0.032  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       109 lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      .|..+|......++++.|...|...-+...        .........|.++...|++++|.+.|.++
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   60 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDP--------DNADAYYNLAAAYYKLGKYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCC--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366778888888888888777654321100        00012345677888888888888877654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=91.02  E-value=3.8  Score=38.55  Aligned_cols=108  Identities=18%  Similarity=0.151  Sum_probs=77.1

Q ss_pred             cHHHHHHHH-HcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC--cH--HH
Q psy11525         81 YISVLHSYA-ASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP--VK--AA  153 (244)
Q Consensus        81 ~~~~l~~~l-~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~--~~--~~  153 (244)
                      +-++|.+|+ ..++++.|..+.+.+  ..+..+..||+..+...+-            ...++.+++..+..  +.  ..
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E------------~~AI~ll~~aL~~~p~d~~LL~  238 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEE------------VEAIRLLNEALKENPQDSELLN  238 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcH------------HHHHHHHHHHHHhCCCCHHHHH
Confidence            456777774 457999999999986  4466677777776654443            23344455444321  22  24


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHC--------CCHHHHHHHHHHhcCHHHHHHHHHh
Q psy11525        154 QQAEMYLLGGNISEAESILLQH--------GLIFRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l~~--------g~~~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      .+|..++..|+++.|.++..++        .-|....+.|+.+++|+.||.....
T Consensus       239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs  293 (395)
T PF09295_consen  239 LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS  293 (395)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence            5788999999999999999887        3567779999999999999965554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK15331 chaperone protein SicA; Provisional

Probab=90.95  E-value=1.9  Score=35.64  Aligned_cols=81  Identities=14%  Similarity=0.046  Sum_probs=63.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHH
Q psy11525         85 LHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMY  159 (244)
Q Consensus        85 l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia  159 (244)
                      -++|...|++++|-.+-+++     .+..-|.-||...-..++++.|..+|......+        .+-+.+.-..|.+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--------~~dp~p~f~agqC~  115 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--------KNDYRPVFFTGQCQ  115 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------cCCCCccchHHHHH
Confidence            34569999999998877665     568899999999999999999999998754221        12344556788999


Q ss_pred             HHcCCHHHHHHHHH
Q psy11525        160 LLGGNISEAESILL  173 (244)
Q Consensus       160 ~~~G~~~eAe~~~l  173 (244)
                      +.+|+.+.|.+.|-
T Consensus       116 l~l~~~~~A~~~f~  129 (165)
T PRK15331        116 LLMRKAAKARQCFE  129 (165)
T ss_pred             HHhCCHHHHHHHHH
Confidence            99999998888543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.93  E-value=0.66  Score=41.64  Aligned_cols=48  Identities=15%  Similarity=0.057  Sum_probs=36.9

Q ss_pred             HHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q psy11525         88 YAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQ  135 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d  135 (244)
                      ++..|++++|++++....+-..=...-...|..++++.|++-+..+.+
T Consensus       112 ~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~  159 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQ  159 (290)
T ss_dssp             HCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            366899999999999887666666777788888888888877766653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=90.83  E-value=1.2  Score=40.76  Aligned_cols=102  Identities=21%  Similarity=0.270  Sum_probs=66.0

Q ss_pred             HHHHcCCHHHHHHHHhcc---CCH--HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHh-hCCCcH--------H
Q psy11525         87 SYAASHSWPQALSLCRTL---NDD--ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHI-KGIPVK--------A  152 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~---~~~--~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i-~~~~~~--------~  152 (244)
                      .||-+++-+.|+++--.+   +++  ..=-.||.-             |+.=|.+++.-.+... .+.++.        .
T Consensus        44 NfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnL-------------fRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl  110 (389)
T COG2956          44 NFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNL-------------FRSRGEVDRAIRIHQTLLESPDLTFEQRLLAL  110 (389)
T ss_pred             HHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHH-------------HHhcchHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            467778888888754443   222  222234433             5555555554333322 233331        1


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCCC-HHHH-------HHHHHHhcCHHHHHHHHHhc
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHGL-IFRA-------IQVSILTHNWDRALELALRH  201 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g~-~~~A-------i~m~~~l~~W~~Al~LA~~~  201 (244)
                      -..|+=++..|-+|-||++|..--+ ++.|       +.+|+.-..|++|++.|++.
T Consensus       111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L  167 (389)
T COG2956         111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERL  167 (389)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            2468889999999999999998755 4443       78999999999999999853

>KOG1840|consensus

Probab=90.78  E-value=2.4  Score=41.22  Aligned_cols=121  Identities=21%  Similarity=0.208  Sum_probs=87.5

Q ss_pred             HHHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc---
Q psy11525         87 SYAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---  150 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---  150 (244)
                      .+-..+++++|..+.+..             .....-.+||..-...|+++-|+.-|..+     +.-.++...-..   
T Consensus       334 ~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a-----i~~~~~~~~~~~~~~  408 (508)
T KOG1840|consen  334 ILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA-----IQILRELLGKKDYGV  408 (508)
T ss_pred             HHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH-----HHHHHhcccCcChhh
Confidence            346778888888776543             24678899999999999999999988752     233333322211   


Q ss_pred             --HHHHHHHHHHHcCCHHHHHHHHHHCCCHHHH---------------HHHHHHhcCHHHHHHHHHhcCCchhHHHHHHH
Q psy11525        151 --KAAQQAEMYLLGGNISEAESILLQHGLIFRA---------------IQVSILTHNWDRALELALRHKTHIDTVLYQRK  213 (244)
Q Consensus       151 --~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~A---------------i~m~~~l~~W~~Al~LA~~~~~~~~~vl~~r~  213 (244)
                        ....+|..+...+++.+|+++|.++..+..+               ...|..+|++|.|.+++..       |+.-|.
T Consensus       409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~-------~~~~~~  481 (508)
T KOG1840|consen  409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEK-------VLNARE  481 (508)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHH-------HHHHHH
Confidence              2356788888888999999999999887754               4679999999999998763       455666


Q ss_pred             HHHHHc
Q psy11525        214 KYLDNL  219 (244)
Q Consensus       214 ~yl~~~  219 (244)
                      ..+.+-
T Consensus       482 ~~~~~~  487 (508)
T KOG1840|consen  482 QRLGTA  487 (508)
T ss_pred             HcCCCC
Confidence            655443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=90.67  E-value=1.9  Score=36.36  Aligned_cols=102  Identities=15%  Similarity=0.148  Sum_probs=57.7

Q ss_pred             cCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHH-HHcCC
Q psy11525         91 SHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMY-LLGGN  164 (244)
Q Consensus        91 ~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia-~~~G~  164 (244)
                      ..+.+++....+..     ++...|..||...+..++++.|..+|.+.-...        -+..+-....|.+. ...|+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--------P~~~~~~~~lA~aL~~~~g~  123 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--------GENAELYAALATVLYYQAGQ  123 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCC
Confidence            44445555544442     678899999999999999999999996532211        00111123345543 34455


Q ss_pred             --HHHHHHHHHHCCCHH----HH----HHHHHHhcCHHHHHHHHHh
Q psy11525        165 --ISEAESILLQHGLIF----RA----IQVSILTHNWDRALELALR  200 (244)
Q Consensus       165 --~~eAe~~~l~~g~~~----~A----i~m~~~l~~W~~Al~LA~~  200 (244)
                        +++|.++|.+.=..+    .|    =..+..+|+|++|+..-++
T Consensus       124 ~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~  169 (198)
T PRK10370        124 HMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK  169 (198)
T ss_pred             CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence              477777766541110    01    1223456666666655544

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.65  E-value=0.028  Score=44.31  Aligned_cols=51  Identities=16%  Similarity=0.144  Sum_probs=46.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCC
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKT  203 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~  203 (244)
                      ...+.++...|.+++|.-+|.+.|++++|+++...++.|++|++.|++.+.
T Consensus        74 ~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~  124 (143)
T PF00637_consen   74 DKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDD  124 (143)
T ss_dssp             THHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSS
T ss_pred             HHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCc
Confidence            456788889999999999999999999999999999999999999999874

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=90.41  E-value=1.6  Score=38.71  Aligned_cols=16  Identities=13%  Similarity=0.470  Sum_probs=8.6

Q ss_pred             HHHHHHHcCCHHHHHH
Q psy11525         84 VLHSYAASHSWPQALS   99 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~   99 (244)
                      +-..|-..|+|++|..
T Consensus        41 Aa~~fk~~~~~~~A~~   56 (282)
T PF14938_consen   41 AANCFKLAKDWEKAAE   56 (282)
T ss_dssp             HHHHHHHTT-CHHHHH
T ss_pred             HHHHHHHHhccchhHH
Confidence            3334566677776664

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=90.35  E-value=0.84  Score=31.14  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=40.6

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      -|+..++|+.|.+.+..+     .+...|...|......+++..|..+|.+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            368899999999999885     57889999999999999999998888753

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=90.35  E-value=3.6  Score=30.07  Aligned_cols=48  Identities=10%  Similarity=0.058  Sum_probs=32.6

Q ss_pred             HHHHHcCCHHHHHHHHhccC----C----HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         86 HSYAASHSWPQALSLCRTLN----D----DILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~~----~----~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      ..++..|++++|.+.+....    .    ...+..+|......++++-|...|..+
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~   65 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV   65 (119)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            34577888888888776641    1    345666777777777777777776653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=90.33  E-value=1.9  Score=40.08  Aligned_cols=81  Identities=15%  Similarity=0.079  Sum_probs=51.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHH
Q psy11525         85 LHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMY  159 (244)
Q Consensus        85 l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia  159 (244)
                      ++-.+..++.++|.+.++..     ++.....++|..|+..++++.|+..|.+.-.         +..-.......|.+.
T Consensus       301 l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~---------~~P~~~~~~~La~~~  371 (398)
T PRK10747        301 LIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALK---------QRPDAYDYAWLADAL  371 (398)
T ss_pred             HHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------cCCCHHHHHHHHHHH
Confidence            34446668888888877654     4566777888888888888888877754321         111111224567777


Q ss_pred             HHcCCHHHHHHHHHH
Q psy11525        160 LLGGNISEAESILLQ  174 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~  174 (244)
                      ...|+.++|.++|.+
T Consensus       372 ~~~g~~~~A~~~~~~  386 (398)
T PRK10747        372 DRLHKPEEAAAMRRD  386 (398)
T ss_pred             HHcCCHHHHHHHHHH
Confidence            777777777666653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=90.32  E-value=2  Score=34.89  Aligned_cols=84  Identities=14%  Similarity=0.062  Sum_probs=56.4

Q ss_pred             HHHcCCHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTLN--------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMY  159 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~--------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia  159 (244)
                      +...|++++|...++...        ....|..+|......++++.|..+|.+.=+.        -..........|.++
T Consensus        45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~  116 (172)
T PRK02603         45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--------NPKQPSALNNIAVIY  116 (172)
T ss_pred             HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHH
Confidence            478899999999887642        1358999999999999999999888642211        111112234567777


Q ss_pred             HHcCCHHHHHHHHHHCCCHHHHHHHH
Q psy11525        160 LLGGNISEAESILLQHGLIFRAIQVS  185 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~~g~~~~Ai~m~  185 (244)
                      ...|+...|.      |+.+.|+..+
T Consensus       117 ~~~g~~~~a~------~~~~~A~~~~  136 (172)
T PRK02603        117 HKRGEKAEEA------GDQDEAEALF  136 (172)
T ss_pred             HHcCChHhHh------hCHHHHHHHH
Confidence            7878776655      4455565554

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=89.36  E-value=0.76  Score=30.76  Aligned_cols=56  Identities=16%  Similarity=0.078  Sum_probs=37.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        112 CLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       112 ~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      .+|...++.++++.|+.+|..+-...        -.-.+-....|.++...|++++|...|.+.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46778888888888888887643221        000112346788999999999998887653

>KOG0292|consensus

Probab=89.30  E-value=12  Score=38.84  Aligned_cols=108  Identities=16%  Similarity=0.110  Sum_probs=81.5

Q ss_pred             ccHHHHHHH---HHcCCHHHHHHHHhcc--CCHHHHHHHH-------------------HHHHHcCCHHHHHHHHHHhCC
Q psy11525         80 PYISVLHSY---AASHSWPQALSLCRTL--NDDILWACLA-------------------GMATYSRDLATSEEAYAAIEQ  135 (244)
Q Consensus        80 p~~~~l~~~---l~~~~~~~A~~~~~~~--~~~~lW~~LA-------------------~~Al~~~~l~~A~~~y~~l~d  135 (244)
                      +.+.+=+.|   |-.++|++-+.+.+..  +-.+.-..|-                   ..||+.+|+++|..+-.+++|
T Consensus       592 ~IDptEy~FKlALi~k~ydeVl~lI~ns~LvGqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd  671 (1202)
T KOG0292|consen  592 TIDPTEYRFKLALLNKKYDEVLHLIKNSNLVGQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDD  671 (1202)
T ss_pred             eechHHHHHHHHHHhhhhHHHHHHHHhcCcccHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCc
Confidence            567777777   8889999999999874  2333333222                   357888888888877777776


Q ss_pred             hhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHh
Q psy11525        136 VDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       136 ~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      .+.-             .+.|+-|+.+|+.+-||..|-+...+++.--+|.-.|+-|+--++++.
T Consensus       672 ~d~w-------------~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~i  723 (1202)
T KOG0292|consen  672 KDVW-------------ERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKI  723 (1202)
T ss_pred             HHHH-------------HHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHH
Confidence            6443             467899999999999999999999998888888777777776555543

>KOG2114|consensus

Probab=88.78  E-value=9.5  Score=39.04  Aligned_cols=123  Identities=16%  Similarity=0.029  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH---HHHHHHHHHHcCCHHHHHHHHHHCCCHHHH-HHH
Q psy11525        109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK---AAQQAEMYLLGGNISEAESILLQHGLIFRA-IQV  184 (244)
Q Consensus       109 lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~---~~~~A~ia~~~G~~~eAe~~~l~~g~~~~A-i~m  184 (244)
                      +|..-...--..-......-||.+++|+.++.-.-+.....+-   ....-+++--.+-.++|+-+-.+.+.-..+ .-+
T Consensus       420 Le~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~il  499 (933)
T KOG2114|consen  420 LEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDIL  499 (933)
T ss_pred             HHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHH
Confidence            3433333333334466788999999999998644443332111   122335555666678888888887774444 557


Q ss_pred             HHHhcCHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCCcccHHHHHhc
Q psy11525        185 SILTHNWDRALELALRHKTH-IDTVLYQRKKYLDNLEKIETNEKFLRL  231 (244)
Q Consensus       185 ~~~l~~W~~Al~LA~~~~~~-~~~vl~~r~~yl~~~~~~e~~~~f~~~  231 (244)
                      +.+++++++|++.-++..+. +-..+..+-+.|.+-..+||...+.+.
T Consensus       500 le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~h~P~~t~~ili~~  547 (933)
T KOG2114|consen  500 LEDLHNYEEALRYISSLPISELLRTLNKYGKILLEHDPEETMKILIEL  547 (933)
T ss_pred             HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            78899999999999999866 555566667777666667776655543

>KOG0550|consensus

Probab=88.25  E-value=2.3  Score=40.21  Aligned_cols=135  Identities=16%  Similarity=0.021  Sum_probs=92.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChh--------H-------H-----------HHHHHhhCCCc----HHHH
Q psy11525        105 NDDILWACLAGMATYSRDLATSEEAYAAIEQVD--------K-------V-----------MYINHIKGIPV----KAAQ  154 (244)
Q Consensus       105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~--------~-------v-----------~~l~~i~~~~~----~~~~  154 (244)
                      +.=..|+.=|..+-+.|++..|.+||..-=..+        +       |           .-.....++.+    ...+
T Consensus       247 k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~  326 (486)
T KOG0550|consen  247 KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLR  326 (486)
T ss_pred             HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHH
Confidence            344679999999999999999999998532211        1       1           11111112222    2357


Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCC-----------chhHHHHHHHHHH------H
Q psy11525        155 QAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKT-----------HIDTVLYQRKKYL------D  217 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~-----------~~~~vl~~r~~yl------~  217 (244)
                      +|...+.++++++|.+-|-++..-..-.+..+.+++-..||.-+++.+.           ..+.--.+|..-|      .
T Consensus       327 ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~  406 (486)
T KOG0550|consen  327 RANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN  406 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC
Confidence            8999999999999999999998888888888888888888887766331           1122233444444      2


Q ss_pred             HcCCcccHHHHHhcccccccCc
Q psy11525        218 NLEKIETNEKFLRLQSEVIMSG  239 (244)
Q Consensus       218 ~~~~~e~~~~f~~~~~~~~~~~  239 (244)
                      ...+.|+..+|+..+.+-.|++
T Consensus       407 agsq~eaE~kFkevgeAy~il~  428 (486)
T KOG0550|consen  407 AGSQKEAEAKFKEVGEAYTILS  428 (486)
T ss_pred             cchhHHHHHHHHHHHHHHHHhc
Confidence            3446899999999987766653

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=88.22  E-value=2.3  Score=33.14  Aligned_cols=38  Identities=16%  Similarity=0.212  Sum_probs=32.3

Q ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhc
Q psy11525        164 NISEAESILLQHGLIFRAIQVSILTHNWDRALELALRH  201 (244)
Q Consensus       164 ~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~  201 (244)
                      +.+.|-++..+.+.+..|+-+|...++|++|++++-.+
T Consensus        71 d~~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~  108 (140)
T smart00299       71 DIEKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEH  108 (140)
T ss_pred             CHHHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHc
Confidence            36778888888888888899999899999998888776

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=88.10  E-value=0.63  Score=32.38  Aligned_cols=63  Identities=13%  Similarity=0.037  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC----CcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        108 ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI----PVKAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       108 ~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~----~~~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      ..+..+|......++++.|..+|.+.-+     ..+.+.+.    ......+|.+....|++++|.+.|.++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALD-----IEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH-----HHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4567788888888888888888876332     21111110    011235788888888888888887654

...

>KOG1155|consensus

Probab=87.82  E-value=5.1  Score=38.49  Aligned_cols=85  Identities=18%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHH---hCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCH---
Q psy11525        105 NDDILWACLAGMATYSRDLATSEEAYAA---IEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLI---  178 (244)
Q Consensus       105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~---l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~---  178 (244)
                      .+..+|..||+--.+-.+++.|++||.+   +||+.+           +...+.|.+.-.+++.++|.+.|.+.=..   
T Consensus       430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~-----------~~l~~LakLye~l~d~~eAa~~yek~v~~~~~  498 (559)
T KOG1155|consen  430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG-----------SALVRLAKLYEELKDLNEAAQYYEKYVEVSEL  498 (559)
T ss_pred             CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch-----------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999985   344411           22356778888888888888888765331   


Q ss_pred             --------HHH----HHHHHHhcCHHHHHHHHHh
Q psy11525        179 --------FRA----IQVSILTHNWDRALELALR  200 (244)
Q Consensus       179 --------~~A----i~m~~~l~~W~~Al~LA~~  200 (244)
                              .+|    -+-+...++|++|-.-|..
T Consensus       499 eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~  532 (559)
T KOG1155|consen  499 EGEIDDETIKARLFLAEYFKKMKDFDEASYYATL  532 (559)
T ss_pred             hcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence                    122    2345677788888775544

>KOG2063|consensus

Probab=87.73  E-value=6.8  Score=40.49  Aligned_cols=106  Identities=18%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             CCCCCCeEEeEeCCEEEEEecCCcEEEeecCccHHHHHHHHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHH
Q psy11525         49 EFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEE  128 (244)
Q Consensus        49 ~~~~~~~~v~f~g~~v~~~~~~G~~~~~~~~p~~~~l~~~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~  128 (244)
                      +++....+++..++.++...-+|...-..++.+.....+++...+|++|..+|+..+.                      
T Consensus       278 ~~~~~~~l~s~~~~i~~~~~~s~v~~L~p~~~~~~qi~~lL~~k~fe~ai~L~e~~~~----------------------  335 (877)
T KOG2063|consen  278 PLSNGRSLLSAHNGIIFVASLSNVWILVPVSNFEKQIQDLLQEKSFEEAISLAEILDS----------------------  335 (877)
T ss_pred             cccccceeeecCCcEEEEEeccceEEEEeccchHHHHHHHHHhhhHHHHHHHHhccCC----------------------
Confidence            4556666777677655555434444333332388889999999999999999887654                      


Q ss_pred             HHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHH-HHHHHHH
Q psy11525        129 AYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIF-RAIQVSI  186 (244)
Q Consensus       129 ~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~-~Ai~m~~  186 (244)
                           .+....+.+..++.+     ..|...-.+|+|++|-+.|.++..=. --+.||=
T Consensus       336 -----~~p~~~~~i~~~~~l-----~~a~~lf~q~~f~ea~~~F~~~~~d~~~vi~lfP  384 (877)
T KOG2063|consen  336 -----PNPKEKRQISCIKIL-----IDAFELFLQKQFEEAMSLFEKSEIDPRHVISLFP  384 (877)
T ss_pred             -----CChHHHHHHHHHHHH-----HHHHHHHHhhhHHHHHHHHHhhccChHHHHHhch
Confidence                 122222222222111     11667778889999999998886544 3444544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=87.68  E-value=8.8  Score=27.92  Aligned_cols=85  Identities=14%  Similarity=0.060  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC---CCcHHHHHHHHHHHcCCHHHHHHHHHHCCC-------
Q psy11525        108 ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG---IPVKAAQQAEMYLLGGNISEAESILLQHGL-------  177 (244)
Q Consensus       108 ~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~---~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~-------  177 (244)
                      ..+-.+|...+..++++-|...|..+-.        .-..   ..+.....|.++...|++++|.+.|.+.-.       
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~   74 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLK--------KYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK   74 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc
Confidence            4567788888999999988888776521        1000   011234578888888999888888875421       


Q ss_pred             ----HHHHHHHHHHhcCHHHHHHHHHh
Q psy11525        178 ----IFRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       178 ----~~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                          ....-.++..++++++|+..-.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~  101 (119)
T TIGR02795        75 APDALLKLGMSLQELGDKEKAKATLQQ  101 (119)
T ss_pred             ccHHHHHHHHHHHHhCChHHHHHHHHH
Confidence                12334566677777777665543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=87.55  E-value=4.9  Score=36.99  Aligned_cols=100  Identities=14%  Similarity=0.031  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH---H
Q psy11525        109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLIF---R  180 (244)
Q Consensus       109 lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~---~  180 (244)
                      .+...|..+...++++.|..+|.+.=        +.--........+|.+++.+|++++|...|.++     +.+.   .
T Consensus         4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al--------~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~   75 (356)
T PLN03088          4 DLEDKAKEAFVDDDFALAVDLYTQAI--------DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR   75 (356)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            46677999999999999999886531        111111123356788999999999999988776     1111   1


Q ss_pred             HHHHHHHhcCHHHHHHHHHh---cCCc---hhHHHHHHHHHH
Q psy11525        181 AIQVSILTHNWDRALELALR---HKTH---IDTVLYQRKKYL  216 (244)
Q Consensus       181 Ai~m~~~l~~W~~Al~LA~~---~~~~---~~~vl~~r~~yl  216 (244)
                      .-..|..++++++|+...++   .++.   +...+......+
T Consensus        76 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         76 KGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            12466788999999887655   2332   444444444444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=86.93  E-value=16  Score=33.70  Aligned_cols=125  Identities=14%  Similarity=0.043  Sum_probs=68.8

Q ss_pred             HHcCCHHHHHHHHhccC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc----HHHH
Q psy11525         89 AASHSWPQALSLCRTLN----------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV----KAAQ  154 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~~----------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~----~~~~  154 (244)
                      =..++|+.|+..|+.+.          -....-.||..++...+++-|.            ..+.+....+.    -...
T Consensus       152 Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~------------~~l~kAlqa~~~cvRAsi~  219 (389)
T COG2956         152 QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR------------ELLKKALQADKKCVRASII  219 (389)
T ss_pred             HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH------------HHHHHHHhhCccceehhhh
Confidence            34556666666665431          1233444555555555554433            33333333322    2466


Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCH---------HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCCc
Q psy11525        155 QAEMYLLGGNISEAESILLQHGLI---------FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEKI  222 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~g~~---------~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~~  222 (244)
                      .|.+++..|+|..|.+.+-..-+-         +.-.+.|..+|+-++.+....+   +.+..+-++...+.-+..-|..
T Consensus       220 lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~  299 (389)
T COG2956         220 LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGID  299 (389)
T ss_pred             hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChH
Confidence            899999999999998877654221         2235678889988887766544   3333444444444444444444


Q ss_pred             ccH
Q psy11525        223 ETN  225 (244)
Q Consensus       223 e~~  225 (244)
                      ++-
T Consensus       300 ~Aq  302 (389)
T COG2956         300 AAQ  302 (389)
T ss_pred             HHH
Confidence            433

>PRK11189 lipoprotein NlpI; Provisional

Probab=86.91  E-value=12  Score=33.17  Aligned_cols=45  Identities=7%  Similarity=0.065  Sum_probs=38.0

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAA  132 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~  132 (244)
                      +...|++++|.......     .....|..+|......++++.|..+|.+
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~  157 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLA  157 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            48899999999876664     4578899999999999999999988864

>KOG2280|consensus

Probab=86.85  E-value=12  Score=37.93  Aligned_cols=110  Identities=19%  Similarity=0.195  Sum_probs=79.8

Q ss_pred             ccHHHHHHHHHcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHH
Q psy11525         80 PYISVLHSYAASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAE  157 (244)
Q Consensus        80 p~~~~l~~~l~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~  157 (244)
                      .+.+++.+.+..|+-.+|-++....  .++.+|=.-.             ++.+.+++..-+.-+-.=++-+=-..=.-+
T Consensus       686 Sl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~-------------~aLa~~~kweeLekfAkskksPIGy~PFVe  752 (829)
T KOG2280|consen  686 SLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKL-------------TALADIKKWEELEKFAKSKKSPIGYLPFVE  752 (829)
T ss_pred             cHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHH-------------HHHHhhhhHHHHHHHHhccCCCCCchhHHH
Confidence            4567888889999999999999874  4555553222             233455554433322222222222334557


Q ss_pred             HHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q psy11525        158 MYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHK  202 (244)
Q Consensus       158 ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~  202 (244)
                      .++..|+-+||.+.+-+++...+-+++|...|++.+|.++|-+++
T Consensus       753 ~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~~~r  797 (829)
T KOG2280|consen  753 ACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAAEHR  797 (829)
T ss_pred             HHHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHHHhc
Confidence            888999999999999999999999999999999999999998876

>KOG2076|consensus

Probab=86.43  E-value=37  Score=35.08  Aligned_cols=106  Identities=16%  Similarity=0.134  Sum_probs=63.7

Q ss_pred             cHHHHHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHH
Q psy11525         81 YISVLHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQ  154 (244)
Q Consensus        81 ~~~~l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~  154 (244)
                      +.++..-|.. |++++|.++|..+     ....-|..||...-+.|+++-+-.+...         .-++..- .+.-.+
T Consensus       143 l~eAN~lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ll---------AAHL~p~d~e~W~~  212 (895)
T KOG2076|consen  143 LGEANNLFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLL---------AAHLNPKDYELWKR  212 (895)
T ss_pred             HHHHHHHHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHH---------HHhcCCCChHHHHH
Confidence            3455555665 9999999999886     4577788888766666655433332211         1111111 112256


Q ss_pred             HHHHHHHcCCHHHHHHHHHHC--------CCHHHHHHHHHHhcCHHHHHH
Q psy11525        155 QAEMYLLGGNISEAESILLQH--------GLIFRAIQVSILTHNWDRALE  196 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~--------g~~~~Ai~m~~~l~~W~~Al~  196 (244)
                      .|.++..+|+++.|--+|.++        -.+.+-..||..+|.-.+|++
T Consensus       213 ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~  262 (895)
T KOG2076|consen  213 LADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAME  262 (895)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHH
Confidence            777888888888877777654        112334566777777777654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=86.08  E-value=29  Score=35.21  Aligned_cols=44  Identities=7%  Similarity=-0.050  Sum_probs=20.3

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAA  132 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~  132 (244)
                      .-.|+.++|.+++...     .....|..+|..+...++++.|..+|.+
T Consensus        26 ~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~   74 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQK   74 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3445555554444332     1122355555555555555555544444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=86.07  E-value=9.2  Score=32.12  Aligned_cols=33  Identities=9%  Similarity=0.064  Sum_probs=22.6

Q ss_pred             HHHcCCHHHHHHHHhcc----C-CH---HHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL----N-DD---ILWACLAGMATYS  120 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~----~-~~---~lW~~LA~~Al~~  120 (244)
                      |...|+|++|.......    + +.   ..|..+|....+.
T Consensus        80 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~  120 (235)
T TIGR03302        80 YYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ  120 (235)
T ss_pred             HHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence            58899999999999875    1 11   2466666665543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C

Probab=85.03  E-value=1.6  Score=38.96  Aligned_cols=43  Identities=23%  Similarity=0.255  Sum_probs=32.7

Q ss_pred             HHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCc-hhHHHHHHHHHH
Q psy11525        171 ILLQHGLIFRAIQVSILTHNWDRALELALRHKTH-IDTVLYQRKKYL  216 (244)
Q Consensus       171 ~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~-~~~vl~~r~~yl  216 (244)
                      -++..|+.++|++++.+-++|..||-||...+++ .+.   -.++|+
T Consensus         4 ~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~g~e~~~~---v~~~y~   47 (284)
T PF12931_consen    4 QLLLVGNREEAVELALDNGLWAHALLLASSLGPELWKK---VVQEYF   47 (284)
T ss_dssp             HHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS-HHHHHH---HHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHH---HHHHHH
Confidence            4788999999999999999999999999999876 444   334455

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=84.90  E-value=4.6  Score=36.10  Aligned_cols=81  Identities=14%  Similarity=0.046  Sum_probs=60.7

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH----HHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK----AAQQAEM  158 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~----~~~~A~i  158 (244)
                      +...|++++|.+.++..     .....+..+|....+.++++.|+..|.+.-+...        ..+..    ....|.+
T Consensus       124 ~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~--------~~~~~~~~~~~~la~~  195 (355)
T cd05804         124 LEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWD--------CSSMLRGHNWWHLALF  195 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccC--------CCcchhHHHHHHHHHH
Confidence            48899999999998885     3456778899999999999999988876432211        01111    2357889


Q ss_pred             HHHcCCHHHHHHHHHHCC
Q psy11525        159 YLLGGNISEAESILLQHG  176 (244)
Q Consensus       159 a~~~G~~~eAe~~~l~~g  176 (244)
                      +...|++++|..+|-+..
T Consensus       196 ~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         196 YLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHCCCHHHHHHHHHHHh
Confidence            999999999999998853

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=84.45  E-value=22  Score=36.71  Aligned_cols=139  Identities=10%  Similarity=-0.024  Sum_probs=83.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcc----C-C-HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHH-
Q psy11525         83 SVLHSYAASHSWPQALSLCRTL----N-D-DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQ-  155 (244)
Q Consensus        83 ~~l~~~l~~~~~~~A~~~~~~~----~-~-~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~-  155 (244)
                      ...+.....|+++.|+...+..    + + +... .++..+...++.+.|+..+.+.-+..-.          ....+. 
T Consensus        39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~----------~~~~lla  107 (822)
T PRK14574         39 DSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNI----------SSRGLAS  107 (822)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCC----------CHHHHHH
Confidence            3444457899999999988774    1 2 1233 6666666778888777666554321111          112333 


Q ss_pred             -HHHHHHcCCHHHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHhcCCc-hhHHHHHHHHHHH-HcC-Ccc
Q psy11525        156 -AEMYLLGGNISEAESILLQH-----GLIF---RAIQVSILTHNWDRALELALRHKTH-IDTVLYQRKKYLD-NLE-KIE  223 (244)
Q Consensus       156 -A~ia~~~G~~~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~~~~~-~~~vl~~r~~yl~-~~~-~~e  223 (244)
                       |.++...|++++|.++|.+.     +.++   .....|.+.++.++|++.+++.... -+...+.-.-|+. ..+ ..+
T Consensus       108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~  187 (822)
T PRK14574        108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHH
Confidence             66888889999999988876     2211   1146678889999999998886532 1111122234442 222 235


Q ss_pred             cHHHHHhcc
Q psy11525        224 TNEKFLRLQ  232 (244)
Q Consensus       224 ~~~~f~~~~  232 (244)
                      +.+.|+++.
T Consensus       188 AL~~~ekll  196 (822)
T PRK14574        188 ALQASSEAV  196 (822)
T ss_pred             HHHHHHHHH
Confidence            666666653

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=84.20  E-value=19  Score=36.36  Aligned_cols=47  Identities=13%  Similarity=0.191  Sum_probs=34.9

Q ss_pred             HHcCCHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q psy11525         89 AASHSWPQALSLCRT-LNDDILWACLAGMATYSRDLATSEEAYAAIEQ  135 (244)
Q Consensus        89 l~~~~~~~A~~~~~~-~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d  135 (244)
                      ...-.+-++..+++. +.+...-..||....+.+.++.|++.+.++-.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~  114 (694)
T PRK15179         67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ  114 (694)
T ss_pred             chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            334456666777766 46688888899999999999988888776543

>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton

Probab=83.72  E-value=2.8  Score=29.70  Aligned_cols=42  Identities=14%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             CCCCCCeEEeEeCCEEEEEecCCcEEEeecCccHHHHHHHHH
Q psy11525         49 EFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYAA   90 (244)
Q Consensus        49 ~~~~~~~~v~f~g~~v~~~~~~G~~~~~~~~p~~~~l~~~l~   90 (244)
                      .|.....++++.+|+|.+++.||..+.+.+.-++..=.+|++
T Consensus        21 ~f~VeA~fv~~~dgkV~L~k~nG~~i~VP~~kLS~~D~~yve   62 (70)
T PF03983_consen   21 KFKVEAEFVGVNDGKVHLHKTNGVKIAVPLEKLSDEDQEYVE   62 (70)
T ss_dssp             --EEEEEEEEEETTEEEEE-TTS-EEEEETTSB-HHHHHHHH
T ss_pred             CEEEEEEEEEeeCCEEEEEecCCeEEEeEhHHcCHHHHHHHH
Confidence            343455778999999999999999998887777766555543

; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=83.35  E-value=3.6  Score=27.46  Aligned_cols=23  Identities=35%  Similarity=0.407  Sum_probs=14.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        153 AQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      ...|.+++..|++++|++++.+.
T Consensus        29 ~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen   29 LLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            34666777777777777666544

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=82.99  E-value=17  Score=34.15  Aligned_cols=105  Identities=16%  Similarity=0.077  Sum_probs=72.1

Q ss_pred             HHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHH-HHHHHhhCCCc-----HHHHHHHHHHHc
Q psy11525         89 AASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKV-MYINHIKGIPV-----KAAQQAEMYLLG  162 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v-~~l~~i~~~~~-----~~~~~A~ia~~~  162 (244)
                      +..|+|+.|-+.+..-      +.-+.  ....++-+|.++=..+||.+.. +++.++.+.++     .+..++++.+..
T Consensus        95 l~eG~~~qAEkl~~rn------ae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~  166 (400)
T COG3071          95 LFEGDFQQAEKLLRRN------AEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR  166 (400)
T ss_pred             HhcCcHHHHHHHHHHh------hhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence            5678888887777652      11111  1122345677777788887777 67888888732     346789999999


Q ss_pred             CCHHHHHHHHHH----CCCH----HHHHHHHHHhcCHHHHHHHHHhc
Q psy11525        163 GNISEAESILLQ----HGLI----FRAIQVSILTHNWDRALELALRH  201 (244)
Q Consensus       163 G~~~eAe~~~l~----~g~~----~~Ai~m~~~l~~W~~Al~LA~~~  201 (244)
                      |++.-|..-..+    .-+.    ..|.+.|.++|.|...+.+-.+.
T Consensus       167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L  213 (400)
T COG3071         167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKL  213 (400)
T ss_pred             CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999888765443    2332    45788999999999999877653

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=82.74  E-value=5.3  Score=33.14  Aligned_cols=81  Identities=16%  Similarity=0.086  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHH
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVS  185 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~  185 (244)
                      ....|..+|....+.|+++-|.+||.++.++..     ...+.-+.-...-+++++.|++.......      .+|-.+-
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~v~~~i------~ka~~~~  103 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSHVEKYI------EKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHHHHHHH------HHHHHHH
Confidence            357888999999999999999999999877531     11111223455678999999998877664      3444555


Q ss_pred             HHhcCHHHHHHH
Q psy11525        186 ILTHNWDRALEL  197 (244)
Q Consensus       186 ~~l~~W~~Al~L  197 (244)
                      -..++|++--+|
T Consensus       104 ~~~~d~~~~nrl  115 (177)
T PF10602_consen  104 EKGGDWERRNRL  115 (177)
T ss_pred             hccchHHHHHHH
Confidence            556668775444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=82.63  E-value=18  Score=37.40  Aligned_cols=106  Identities=16%  Similarity=0.133  Sum_probs=72.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHhccCC--H--------------HHHHH----HHHHHHHcCCHHHHHHHHHHhCChhHHHHH
Q psy11525         83 SVLHSYAASHSWPQALSLCRTLND--D--------------ILWAC----LAGMATYSRDLATSEEAYAAIEQVDKVMYI  142 (244)
Q Consensus        83 ~~l~~~l~~~~~~~A~~~~~~~~~--~--------------~lW~~----LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l  142 (244)
                      ...+.+++.+++++|..++..+..  +              ..|..    +|...+-.+++..|++.+.++         
T Consensus       372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l---------  442 (822)
T PRK14574        372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL---------  442 (822)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH---------
Confidence            457788999999999999988633  2              23332    466667777777777655442         


Q ss_pred             HHhhCC-C---cHHHHHHHHHHHcCCHHHHHHHHHHC--CCHH--H----HHHHHHHhcCHHHHHHHHHh
Q psy11525        143 NHIKGI-P---VKAAQQAEMYLLGGNISEAESILLQH--GLIF--R----AIQVSILTHNWDRALELALR  200 (244)
Q Consensus       143 ~~i~~~-~---~~~~~~A~ia~~~G~~~eAe~~~l~~--g~~~--~----Ai~m~~~l~~W~~Al~LA~~  200 (244)
                         ... |   +.-..+|.+..-.|.+.+|++.+..+  -.|+  .    -..-+.++++|++|-.+..+
T Consensus       443 ---~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~  509 (822)
T PRK14574        443 ---SSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD  509 (822)
T ss_pred             ---HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence               222 1   12356899999999999999999653  1222  1    14566789999999777743

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=82.55  E-value=14  Score=32.76  Aligned_cols=78  Identities=6%  Similarity=0.015  Sum_probs=49.3

Q ss_pred             HHHcCCHHHHHHHHhcc-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC---CCcHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----N---DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG---IPVKAAQQA  156 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~---~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~---~~~~~~~~A  156 (244)
                      ++..|+|++|....+..     +   .+..|-.+|......++++-|...|..+=        ..--.   .++-....|
T Consensus       153 ~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv--------~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        153 VQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV--------KNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHCCCCcchhHHHHHHH
Confidence            36679999999877664     1   24688889999999999988887766531        11111   111223356


Q ss_pred             HHHHHcCCHHHHHHHHH
Q psy11525        157 EMYLLGGNISEAESILL  173 (244)
Q Consensus       157 ~ia~~~G~~~eAe~~~l  173 (244)
                      .++...|++++|.+.|.
T Consensus       225 ~~~~~~g~~~~A~~~~~  241 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQ  241 (263)
T ss_pred             HHHHHcCCHHHHHHHHH
Confidence            66656666666655553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=82.36  E-value=8.2  Score=29.24  Aligned_cols=81  Identities=11%  Similarity=-0.128  Sum_probs=50.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC--CHH------HHH
Q psy11525        111 ACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG--LIF------RAI  182 (244)
Q Consensus       111 ~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g--~~~------~Ai  182 (244)
                      ..+|..+...++++-|...|..+-...        -...+-...+|.++...|++++|...|.++-  .++      ..=
T Consensus        21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la   92 (135)
T TIGR02552        21 YALAYNLYQQGRYDEALKLFQLLAAYD--------PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA   92 (135)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            456777888888888888875432110        0011223467888888999999998887761  111      112


Q ss_pred             HHHHHhcCHHHHHHHHH
Q psy11525        183 QVSILTHNWDRALELAL  199 (244)
Q Consensus       183 ~m~~~l~~W~~Al~LA~  199 (244)
                      ..|...+++++|+..-+
T Consensus        93 ~~~~~~g~~~~A~~~~~  109 (135)
T TIGR02552        93 ECLLALGEPESALKALD  109 (135)
T ss_pred             HHHHHcCCHHHHHHHHH
Confidence            35677788887766543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.26  E-value=2.7  Score=24.86  Aligned_cols=24  Identities=42%  Similarity=0.833  Sum_probs=18.5

Q ss_pred             cceeeecCCCceEEEEe-CCeEEEE
Q psy11525          2 VQSICWNTDVNILAAMQ-DSALCVW   25 (244)
Q Consensus         2 v~~v~W~~~~~vlv~~~-~~~l~vw   25 (244)
                      |++++|+++.+.|++.+ |+++.+|
T Consensus        14 i~~i~~~~~~~~~~s~~~D~~i~vw   38 (39)
T PF00400_consen   14 INSIAWSPDGNFLASGSSDGTIRVW   38 (39)
T ss_dssp             EEEEEEETTSSEEEEEETTSEEEEE
T ss_pred             EEEEEEecccccceeeCCCCEEEEE
Confidence            67899999976666654 5888877

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1129|consensus

Probab=81.64  E-value=1.6  Score=40.25  Aligned_cols=78  Identities=18%  Similarity=0.151  Sum_probs=57.2

Q ss_pred             HHcCCHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHh--CChhHHHHHHHhhCCCcHHHHHHHHHHHcCCH
Q psy11525         89 AASHSWPQALSLCRT-LNDDILWACLAGMATYSRDLATSEEAYAAI--EQVDKVMYINHIKGIPVKAAQQAEMYLLGGNI  165 (244)
Q Consensus        89 l~~~~~~~A~~~~~~-~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l--~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~  165 (244)
                      +..-.|++|...+.. .+....|-.|+..|+.-|++..|.+||+-.  .|..-          .+.....|.+++..|+.
T Consensus       376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h----------~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH----------GEALNNLAVLAARSGDI  445 (478)
T ss_pred             hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch----------HHHHHhHHHHHhhcCch
Confidence            445567788888774 677889999999999999999999999742  11111          12234568888899999


Q ss_pred             HHHHHHHHHCC
Q psy11525        166 SEAESILLQHG  176 (244)
Q Consensus       166 ~eAe~~~l~~g  176 (244)
                      ++|..+|-.+.
T Consensus       446 ~~Arsll~~A~  456 (478)
T KOG1129|consen  446 LGARSLLNAAK  456 (478)
T ss_pred             HHHHHHHHHhh
Confidence            99988876553

>KOG0985|consensus

Probab=81.31  E-value=6.4  Score=41.33  Aligned_cols=76  Identities=25%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHH-HhcCHHHHHHHHHhcCCc-hhHHHHHHHHHHHHcCCcccHHHHHhcc
Q psy11525        155 QAEMYLLGGNISEAESILLQHGLIFRAIQVSI-LTHNWDRALELALRHKTH-IDTVLYQRKKYLDNLEKIETNEKFLRLQ  232 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~-~l~~W~~Al~LA~~~~~~-~~~vl~~r~~yl~~~~~~e~~~~f~~~~  232 (244)
                      .|.++...+-|+||..+|.+.+....|++... +.+..|||.+.|++-+.+ +=.  ...+..|++.--.++++.|.|+-
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWs--qlakAQL~~~~v~dAieSyikad 1131 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWS--QLAKAQLQGGLVKDAIESYIKAD 1131 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHH--HHHHHHHhcCchHHHHHHHHhcC
Confidence            78999999999999999999999999999776 579999999999997743 211  13344455555567777777763

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=81.23  E-value=20  Score=32.67  Aligned_cols=88  Identities=18%  Similarity=0.238  Sum_probs=63.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcC
Q psy11525         84 VLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGG  163 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G  163 (244)
                      .+..+.+.++|++-.+++..-.++.-|.-+...|+..++...|.+            ||.+   +++  ....++++..|
T Consensus       214 ki~aLa~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~------------yI~k---~~~--~~rv~~y~~~~  276 (319)
T PF04840_consen  214 KIKALAENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASK------------YIPK---IPD--EERVEMYLKCG  276 (319)
T ss_pred             HHHHHHhcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHH------------HHHh---CCh--HHHHHHHHHCC
Confidence            344568999999999999988889999999999999998876653            2332   222  23345667777


Q ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHh
Q psy11525        164 NISEAESILLQHGLIFRAIQVSILT  188 (244)
Q Consensus       164 ~~~eAe~~~l~~g~~~~Ai~m~~~l  188 (244)
                      ++.+|.+.-.+.++++.-.+++...
T Consensus       277 ~~~~A~~~A~~~kd~~~L~~i~~~~  301 (319)
T PF04840_consen  277 DYKEAAQEAFKEKDIDLLKQILKRC  301 (319)
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            7777777777777777666665544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2076|consensus

Probab=81.13  E-value=24  Score=36.32  Aligned_cols=106  Identities=15%  Similarity=0.070  Sum_probs=72.6

Q ss_pred             HHHHHcCCHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMY  159 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia  159 (244)
                      ..|+..|++.+|.++.-.+      ++...|-.+|..-+.-++.+.|..+|-++=        ...-...+--...+.+.
T Consensus       422 ~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl--------~~~p~~~D~Ri~Lasl~  493 (895)
T KOG2076|consen  422 DALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL--------ILAPDNLDARITLASLY  493 (895)
T ss_pred             HHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH--------hcCCCchhhhhhHHHHH
Confidence            3468889999999876554      456799999999999999999998887631        11111122335678899


Q ss_pred             HHcCCHHHHHHHHHHCCCHH-----------------HHHHHHHHhcCHHHHHHHHH
Q psy11525        160 LLGGNISEAESILLQHGLIF-----------------RAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~~g~~~-----------------~Ai~m~~~l~~W~~Al~LA~  199 (244)
                      ..+|++++|-+.+-+--.||                 .-..++...|+.++=++.+.
T Consensus       494 ~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~  550 (895)
T KOG2076|consen  494 QQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS  550 (895)
T ss_pred             HhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            99999999988888744444                 11445566666666555444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=80.76  E-value=30  Score=30.73  Aligned_cols=48  Identities=10%  Similarity=0.081  Sum_probs=30.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCCC-----HH-------HHHHHHHHhcCHHHHHHHHHh
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHGL-----IF-------RAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g~-----~~-------~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ...|+++...|++++|..+|.+.=.     +.       ..-.++...|++++|+++.++
T Consensus       152 ~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~  211 (355)
T cd05804         152 HAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT  211 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3467777777888888777665322     11       133466777777777776665

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=80.61  E-value=4.6  Score=27.03  Aligned_cols=46  Identities=13%  Similarity=0.120  Sum_probs=38.9

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSR-DLATSEEAYAA  132 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~-~l~~A~~~y~~  132 (244)
                      .+...|+|++|.......     .+...|..+|......+ +.+-|..+|.+
T Consensus        12 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen   12 IYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            358899999999988774     57889999999999998 68888888765

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=80.13  E-value=16  Score=29.17  Aligned_cols=65  Identities=9%  Similarity=-0.015  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      ....|..+|..+...++++.|..+|.+.-....     .-.........+|.++...|++++|...|.++
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~-----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI-----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356899999999999999999999887532210     00000112356789999999999999998775

>KOG3081|consensus

Probab=80.03  E-value=8.9  Score=34.35  Aligned_cols=50  Identities=12%  Similarity=0.022  Sum_probs=22.7

Q ss_pred             HHHHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCC
Q psy11525         86 HSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQ  135 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d  135 (244)
                      +=|++.+++++|.+....+.+=..-+.=-..-++..+++.|+....++.+
T Consensus       116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~  165 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQ  165 (299)
T ss_pred             HHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33566666666666665543222222112222333344555544444444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	244
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.9
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	99.86
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.44
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.41
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.15
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.92
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.68
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	97.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	97.52
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.5
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.49
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	97.43
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	97.39
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.39
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.36
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	97.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	97.35
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	97.32
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.3
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.28
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.27
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	97.25
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.23
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.22
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	97.19
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	97.18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	97.18
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	97.13
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	97.12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	97.03
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.03
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	97.02
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.01
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	96.97
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	96.97
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	96.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	96.96
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.94
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.92
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	96.89
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	96.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	96.86
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.86
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.86
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	96.79
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	96.79
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	96.76
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	96.75
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	96.68
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.65
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.64
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.56
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.55
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	96.53
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.53
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.49
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	96.39
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	96.35
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.35
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	96.31
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	96.28
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	96.28
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.25
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	96.22
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.21
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	96.18
2gw1_A	514	Mitochondrial precursor proteins import receptor;	96.16
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.16
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	96.15
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.14
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	96.14
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	96.13
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	96.09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.07
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	96.02
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.98
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	95.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	95.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.89
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.83
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.83
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	95.82
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.77
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	95.75
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.7
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	95.66
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.64
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	95.63
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	95.58
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	95.56
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	95.53
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	95.51
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.51
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	95.47
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	95.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.22
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	95.18
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	95.12
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	95.1
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	95.08
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	95.08
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	95.06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	95.03
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	94.97
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	94.95
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	94.84
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	94.81
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	94.81
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	94.77
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	94.76
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	94.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	94.67
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	94.63
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	94.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	94.52
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.51
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.51
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.5
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	94.47
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	94.41
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	94.41
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	94.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	94.32
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	94.27
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	94.27
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	94.26
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	94.25
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	94.24
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	94.23
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	94.23
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	94.19
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.07
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	94.01
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	93.96
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	93.92
3k9i_A	117	BH0479 protein; putative protein binding protein,	93.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	93.6
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	93.55
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	93.52
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	93.27
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	93.21
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	93.15
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	93.07
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	93.02
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	92.9
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	92.86
2kat_A	115	Uncharacterized protein; NESG, structure, structur	92.85
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	92.83
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	92.5
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	92.32
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	92.28
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	92.25
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	92.23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	92.05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	92.03
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	92.02
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	92.0
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	91.97
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	91.89
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	91.75
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	91.37
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	91.34
2l6j_A	111	TPR repeat-containing protein associated with HSP;	91.31
4g1t_A	472	Interferon-induced protein with tetratricopeptide	90.82
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	90.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	90.6
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	90.3
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	90.14
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	90.13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	89.55
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	89.51
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	89.2
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	89.2
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	88.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	88.68
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	87.95
2l6j_A	111	TPR repeat-containing protein associated with HSP;	87.91
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	87.77
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	87.37
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	87.34
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	86.88
2kat_A	115	Uncharacterized protein; NESG, structure, structur	86.77
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	85.85
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	84.79
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	84.67
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	84.2
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	83.97
3k9i_A	117	BH0479 protein; putative protein binding protein,	83.46
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	83.15
4g1t_A	472	Interferon-induced protein with tetratricopeptide	83.13
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	83.11
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	82.05
2hbp_A	68	Cytoskeleton assembly control protein SLA1; SHD1,	81.73
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	80.39

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.90  E-value=9e-22  Score=191.02  Aligned_cols=134  Identities=13%  Similarity=0.077  Sum_probs=127.8

Q ss_pred             HHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHH
Q psy11525         89 AASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEA  168 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eA  168 (244)
                      ++.|+|++|+++|+.++++.+|+.||++|++.+++++|++||.+++|++++.+|..+....++..++|+++...|+++.|
T Consensus       663 l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A  742 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLA  742 (814)
T ss_dssp             HHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHH
Confidence            78899999999999999999999999999999999999999999999999999999988777788999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcC-Cc--hhHHHHHHHHHHHHcCCc
Q psy11525        169 ESILLQHGLIFRAIQVSILTHNWDRALELALRHK-TH--IDTVLYQRKKYLDNLEKI  222 (244)
Q Consensus       169 e~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~-~~--~~~vl~~r~~yl~~~~~~  222 (244)
                      +.+|+++|++++|++||+++++|++|+.||++|+ .+  ++.++..++.+|+..|+.
T Consensus       743 ~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~  799 (814)
T 3mkq_A          743 FNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKN  799 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccch
Confidence            9999999999999999999999999999999999 45  779999999999999874

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.1e-20  Score=154.31  Aligned_cols=132  Identities=15%  Similarity=0.132  Sum_probs=124.1

Q ss_pred             HHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHH
Q psy11525         89 AASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEA  168 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eA  168 (244)
                      |+.|+++.|+++|+.++++..|++||..||..+++++|++||.++||++++.+|..+....++...+|.++...|++.-|
T Consensus        16 L~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~a   95 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSM   95 (177)
T ss_dssp             HHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888889999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCCcccH
Q psy11525        169 ESILLQHGLIFRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEKIETN  225 (244)
Q Consensus       169 e~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~~e~~  225 (244)
                      +..++..|+++++++|+++.++|++|..+|++|++.  +   ..++++++.|..|..
T Consensus        96 f~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~--~---~a~~~~~~~~~~~~~  147 (177)
T 3mkq_B           96 LLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDE--A---AASAFLEQAEVDEQD  147 (177)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCH--H---HHHHHHHHTTCCGGG
T ss_pred             HHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcH--H---HHHHHHHHhCCcccc
Confidence            999999999999999999999999999999999974  4   556777788776543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.44  E-value=2.4e-05  Score=75.37  Aligned_cols=140  Identities=11%  Similarity=0.026  Sum_probs=95.3

Q ss_pred             CeEEe--EeCCEEEEEecCCcEEEeecCccHHHHHHH---HHcCCHHHHHH-HHhccC-CHHHHHHHHHHHHHcCCHHHH
Q psy11525         54 PSIVS--FVKNHLTIRRYDGTVINYPISPYISVLHSY---AASHSWPQALS-LCRTLN-DDILWACLAGMATYSRDLATS  126 (244)
Q Consensus        54 ~~~v~--f~g~~v~~~~~~G~~~~~~~~p~~~~l~~~---l~~~~~~~A~~-~~~~~~-~~~lW~~LA~~Al~~~~l~~A  126 (244)
                      +.+++  ..|+.+.|...+|.+....+   +..++.|   +..++|++|.+ +...+. ...+ ..++....+.+..+.|
T Consensus       573 ~~~~~~~~~~~~l~~~d~~~~~~~~~l---~~~~~~~~~~~~~~~~~~a~~~~l~~i~~~~~~-~~~~~~l~~~~~~~~a  648 (814)
T 3mkq_A          573 MYLLGYLARDNKVYLADREVHVYGYEI---SLEVLEFQTLTLRGEIEEAIENVLPNVEGKDSL-TKIARFLEGQEYYEEA  648 (814)
T ss_dssp             CEEEEEEGGGTEEEEECTTCCEEEEEC---CHHHHHHHHHHHTTCHHHHHHHTGGGCCCHHHH-HHHHHHHHHTTCHHHH
T ss_pred             EEEEEEEecCCEEEEEcCCCCEEEEEE---CcHHHHHhHHHHhCCHHHHHHHHHhcCCchHHH-HHHHHHHHhCCChHHh
Confidence            34444  46777777777776654333   2233333   88999999998 776666 5544 6666666666666555


Q ss_pred             HH----------HHHHhCChhHHHHHHHhhCCCcH--HHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHH
Q psy11525        127 EE----------AYAAIEQVDKVMYINHIKGIPVK--AAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRA  194 (244)
Q Consensus       127 ~~----------~y~~l~d~~~v~~l~~i~~~~~~--~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~A  194 (244)
                      ..          ....+|+++.+.-+  ++.+.++  -..+|+.|+..|+++.|++.|.++|+++.+..+|..+++.+..
T Consensus       649 ~~~~~~~~~~f~~~l~~~~~~~A~~~--~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~  726 (814)
T 3mkq_A          649 LNISPDQDQKFELALKVGQLTLARDL--LTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGL  726 (814)
T ss_dssp             HHHCCCHHHHHHHHHHHTCHHHHHHH--HTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH
T ss_pred             eecCCCcchheehhhhcCCHHHHHHH--HHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHH
Confidence            32          22455555544333  3344443  3789999999999999999999999999999999999988865


Q ss_pred             HHHHH
Q psy11525        195 LELAL  199 (244)
Q Consensus       195 l~LA~  199 (244)
                      .++|+
T Consensus       727 ~~~~~  731 (814)
T 3mkq_A          727 VTLAK  731 (814)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.41  E-value=4.3e-07  Score=84.66  Aligned_cols=141  Identities=11%  Similarity=0.047  Sum_probs=56.4

Q ss_pred             HcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHH-----------------HHHhhCCC---
Q psy11525         90 ASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMY-----------------INHIKGIP---  149 (244)
Q Consensus        90 ~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~-----------------l~~i~~~~---  149 (244)
                      ..|++++|++++...+++..|..||..+++.++++.|+.||.+.+|+.....                 ++...+..   
T Consensus        15 ~~~~ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~   94 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES   94 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccc
Confidence            4677999999999999999999999999999999999999999888653311                 11111100   


Q ss_pred             --c----------------------------------------------------HHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        150 --V----------------------------------------------------KAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       150 --~----------------------------------------------------~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                        +                                                    ...++|.++..+|+|++|.+.|.++
T Consensus        95 ~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A           95 YVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             --------------CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHc
Confidence              0                                                    0123788999999999999999999


Q ss_pred             CCH---HHHHHHHHHhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525        176 GLI---FRAIQVSILTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       176 g~~---~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~  231 (244)
                      +.+   ..++..|.++++|++|...+.....+-+..... -.+++..|. +|.+..|+++
T Consensus       175 ~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~l-v~~Yek~G~~eEai~lLe~a  233 (449)
T 1b89_A          175 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEEL-INYYQDRGYFEELITMLEAA  233 (449)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHH-HHHHHHTTCHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHH-HHHHHHCCCHHHHHHHHHHH
Confidence            999   888999999999999977666544443442221 234456665 4555666655

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.15  E-value=6.1e-05  Score=78.66  Aligned_cols=120  Identities=12%  Similarity=0.110  Sum_probs=98.8

Q ss_pred             HHHHHHH-HcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhH-----------------HHHHHH
Q psy11525         83 SVLHSYA-ASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDK-----------------VMYINH  144 (244)
Q Consensus        83 ~~l~~~l-~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~-----------------v~~l~~  144 (244)
                      .++..++ ..++|++|.+++...+.+..|.++|..-+..++++.|..||.+-+|.+.                 +++++.
T Consensus      1080 ~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~m 1159 (1630)
T 1xi4_A         1080 SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQM 1159 (1630)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3344445 8899999999999999999999999999999999999999999888654                 344433


Q ss_pred             hhCCC-----------------c--------------HHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHH
Q psy11525        145 IKGIP-----------------V--------------KAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDR  193 (244)
Q Consensus       145 i~~~~-----------------~--------------~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~  193 (244)
                      .++..                 .              .....|..+...|+|++|-.+|.+++.+.++...+..++++++
T Consensus      1160 Ark~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~ 1239 (1630)
T 1xi4_A         1160 ARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQA 1239 (1630)
T ss_pred             HHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHH
Confidence            22211                 0              1134788888999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q psy11525        194 ALELALRHK  202 (244)
Q Consensus       194 Al~LA~~~~  202 (244)
                      |++.|++-+
T Consensus      1240 AIEaarKA~ 1248 (1630)
T 1xi4_A         1240 AVDGARKAN 1248 (1630)
T ss_pred             HHHHHHHhC
Confidence            999997754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.92  E-value=0.0002  Score=74.84  Aligned_cols=134  Identities=22%  Similarity=0.178  Sum_probs=97.3

Q ss_pred             cHHHHHHHHHcCCHHHHHHHHhccCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHH-HHHHHhhCCCcH
Q psy11525         81 YISVLHSYAASHSWPQALSLCRTLNDD--------ILWACLAGMATYSRDLATSEEAYAAIEQVDKV-MYINHIKGIPVK  151 (244)
Q Consensus        81 ~~~~l~~~l~~~~~~~A~~~~~~~~~~--------~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v-~~l~~i~~~~~~  151 (244)
                      .+.....|+..|...+|..+.+.+..+        .+=..|+..|++.              |.+++ .++.++.+..  
T Consensus       988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka--------------D~~Rv~eyI~kLd~~d-- 1051 (1630)
T 1xi4_A          988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA--------------DRTRVMEYINRLDNYD-- 1051 (1630)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh--------------ChhhHHHHHHHhhhcc--
Confidence            356777889999999999999886321        1111133333322              44443 4455544322  


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHH-HhcCHHHHHHHHHhcCCchhHHHHHHHHHHHHcCC-cccHHHHH
Q psy11525        152 AAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSI-LTHNWDRALELALRHKTHIDTVLYQRKKYLDNLEK-IETNEKFL  229 (244)
Q Consensus       152 ~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~-~l~~W~~Al~LA~~~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~  229 (244)
                      ....|.++...|+|+||..+|.+++....|++.+. .+++|++|+++|++-+.  ..+.....+.+++.|+ .|++..|.
T Consensus      1052 ~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A         1052 APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            23489999999999999999999999999977776 99999999999997654  4667777777777666 78888888


Q ss_pred             hcc
Q psy11525        230 RLQ  232 (244)
Q Consensus       230 ~~~  232 (244)
                      +++
T Consensus      1130 KAd 1132 (1630)
T 1xi4_A         1130 KAD 1132 (1630)
T ss_pred             hcC
Confidence            874

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.68  E-value=0.0019  Score=50.36  Aligned_cols=137  Identities=9%  Similarity=-0.121  Sum_probs=94.9

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      |...|+|++|.+..+..     .....|..+|......++++.|...|...-        ..-..........|.+....
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~   86 (184)
T 3vtx_A           15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFV--------VLDTTSAEAYYILGSANFMI   86 (184)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------hcCchhHHHHHHHHHHHHHc
Confidence            57899999999988774     567889999999999999998888776531        11111122335678888899


Q ss_pred             CCHHHHHHHHHHCCC-----HH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHh
Q psy11525        163 GNISEAESILLQHGL-----IF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLR  230 (244)
Q Consensus       163 G~~~eAe~~~l~~g~-----~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~  230 (244)
                      |++++|...|.++-.     ++   .--.+|..+++|++|++..++   .+|....+......-+...|+ .++.+.|++
T Consensus        87 ~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  166 (184)
T 3vtx_A           87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKK  166 (184)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999988876422     11   223567888999999876554   455544555555566666666 677777777


Q ss_pred             cc
Q psy11525        231 LQ  232 (244)
Q Consensus       231 ~~  232 (244)
                      +-
T Consensus       167 al  168 (184)
T 3vtx_A          167 AL  168 (184)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=97.63  E-value=0.00034  Score=57.32  Aligned_cols=90  Identities=12%  Similarity=0.052  Sum_probs=81.1

Q ss_pred             HHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHH
Q psy11525        118 TYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALEL  197 (244)
Q Consensus       118 l~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~L  197 (244)
                      -+.+|++-..-.|.-.||.+++..+.++.....+....-..++++|+++++.++|.++|++.+|.-+-+.-+.-+.|-++
T Consensus        58 ~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~  137 (177)
T 3mkq_B           58 QTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAF  137 (177)
T ss_dssp             HHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHH
Confidence            35678999999999999999999999998887777777889999999999999999999999999999999999999999


Q ss_pred             HHhcCCchhH
Q psy11525        198 ALRHKTHIDT  207 (244)
Q Consensus       198 A~~~~~~~~~  207 (244)
                      .++.+...++
T Consensus       138 ~~~~~~~~~~  147 (177)
T 3mkq_B          138 LEQAEVDEQD  147 (177)
T ss_dssp             HHHTTCCGGG
T ss_pred             HHHhCCcccc
Confidence            9988865444

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=97.52  E-value=0.0013  Score=53.74  Aligned_cols=143  Identities=16%  Similarity=0.042  Sum_probs=75.8

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------------------------
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI-----------------------------  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l-----------------------------  133 (244)
                      ++..|++++|....+..     .....|..+|......++++.|+.+|.+.                             
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~   94 (217)
T 2pl2_A           15 LYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRE   94 (217)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhc
Confidence            46778888887776653     45677777888888888887777776643                             


Q ss_pred             ---CChhHH-HHHHHhhCC-Cc---HHHHHHHHHHHcCCHHHHHHHHHHC----CCHHH---HHHHHHHhcCHHHHHHHH
Q psy11525        134 ---EQVDKV-MYINHIKGI-PV---KAAQQAEMYLLGGNISEAESILLQH----GLIFR---AIQVSILTHNWDRALELA  198 (244)
Q Consensus       134 ---~d~~~v-~~l~~i~~~-~~---~~~~~A~ia~~~G~~~eAe~~~l~~----g~~~~---Ai~m~~~l~~W~~Al~LA  198 (244)
                         |++... ..++++..+ ++   .....|.++...|++++|...|.++    +.+..   --.+|..+|++++|+...
T Consensus        95 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~  174 (217)
T 2pl2_A           95 RGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQY  174 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence               111111 111222111 11   1245677888888888888887664    22221   234567778888877655


Q ss_pred             Hh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHh
Q psy11525        199 LR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLR  230 (244)
Q Consensus       199 ~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~  230 (244)
                      ++   .+|.-..+.......+...|+ .++.+.|++
T Consensus       175 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          175 AKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            44   344433444444455544444 344554444

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.50  E-value=0.0068  Score=49.24  Aligned_cols=144  Identities=12%  Similarity=0.010  Sum_probs=82.7

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC---------------------ChhHH-H
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------QVDKV-M  140 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------d~~~v-~  140 (244)
                      +...|++++|....+..     .....|..+|......++++.|..+|.+.-                     ++... .
T Consensus        47 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~  126 (252)
T 2ho1_A           47 YLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQ  126 (252)
T ss_dssp             HHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHH
Confidence            35566666666655442     245556666666666666666655554321                     11111 2


Q ss_pred             HHHHhhC--C-Cc---HHHHHHHHHHHcCCHHHHHHHHHHCC-----C---HHHHHHHHHHhcCHHHHHHHHHhc---CC
Q psy11525        141 YINHIKG--I-PV---KAAQQAEMYLLGGNISEAESILLQHG-----L---IFRAIQVSILTHNWDRALELALRH---KT  203 (244)
Q Consensus       141 ~l~~i~~--~-~~---~~~~~A~ia~~~G~~~eAe~~~l~~g-----~---~~~Ai~m~~~l~~W~~Al~LA~~~---~~  203 (244)
                      .++++..  . +.   .....|.++...|++++|.+.|.++-     .   ......++..++++++|++..++.   .+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~  206 (252)
T 2ho1_A          127 RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG  206 (252)
T ss_dssp             HHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            2233322  1 11   12457889999999999999998741     1   223356788999999998877652   33


Q ss_pred             chhHHHHHHHHHHHHcCCcc-cHHHHHhc
Q psy11525        204 HIDTVLYQRKKYLDNLEKIE-TNEKFLRL  231 (244)
Q Consensus       204 ~~~~vl~~r~~yl~~~~~~e-~~~~f~~~  231 (244)
                      .....+......+...|+.+ +...|+++
T Consensus       207 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  235 (252)
T 2ho1_A          207 QNARSLLLGIRLAKVFEDRDTAASYGLQL  235 (252)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            33445555566666666654 44444444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.00093  Score=54.10  Aligned_cols=86  Identities=8%  Similarity=0.027  Sum_probs=63.6

Q ss_pred             HHHHcCCHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC----CcHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI----PVKAAQQAEM  158 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~----~~~~~~~A~i  158 (244)
                      .+...|+|++|.......    .....|..+|......++++.|..+|.+.-..     -......    .......|.+
T Consensus        14 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~~~~l~~~   88 (258)
T 3uq3_A           14 KFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQ-----GREMRADYKVISKSFARIGNA   88 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CcccccchHHHHHHHHHHHHH
Confidence            358899999999987664    56789999999999999999999999873221     1111000    1223568889


Q ss_pred             HHHcCCHHHHHHHHHHCCC
Q psy11525        159 YLLGGNISEAESILLQHGL  177 (244)
Q Consensus       159 a~~~G~~~eAe~~~l~~g~  177 (244)
                      +...|++++|...|.++-.
T Consensus        89 ~~~~~~~~~A~~~~~~a~~  107 (258)
T 3uq3_A           89 YHKLGDLKKTIEYYQKSLT  107 (258)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHh
Confidence            9999999999999877644

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=97.43  E-value=0.0074  Score=53.36  Aligned_cols=138  Identities=11%  Similarity=0.007  Sum_probs=86.3

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYL  160 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~  160 (244)
                      ..+...|++++|..+.+..     .....|..+|......++++.|..+|.+.-...        ..........|.++.
T Consensus        34 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~  105 (450)
T 2y4t_A           34 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--------MDFTAARLQRGHLLL  105 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHH
Confidence            3468999999999988764     468899999999999999999999887642110        011112245677777


Q ss_pred             HcCCHHHHHHHHHHCCC--H------HHH---------------HHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHH
Q psy11525        161 LGGNISEAESILLQHGL--I------FRA---------------IQVSILTHNWDRALELALR---HKTHIDTVLYQRKK  214 (244)
Q Consensus       161 ~~G~~~eAe~~~l~~g~--~------~~A---------------i~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~  214 (244)
                      ..|++++|.+.|.++-.  +      ..-               -..+...++|++|++..++   ..+....+......
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  185 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE  185 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            78888888877766521  1      111               1236677777777766654   22322233333444


Q ss_pred             HHHHcCC-cccHHHHHhc
Q psy11525        215 YLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       215 yl~~~~~-~e~~~~f~~~  231 (244)
                      .+...|+ .++.+.|.++
T Consensus       186 ~~~~~g~~~~A~~~~~~~  203 (450)
T 2y4t_A          186 CFIKEGEPRKAISDLKAA  203 (450)
T ss_dssp             HHHHTTCGGGGHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            4444443 5666666655

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=97.39  E-value=0.0082  Score=49.07  Aligned_cols=80  Identities=14%  Similarity=0.061  Sum_probs=61.2

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +...|++++|....+..     .....|..+|......++++.|..+|.+.-.        .-..........|.++...
T Consensus        53 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~la~~~~~~  124 (275)
T 1xnf_A           53 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--------LDPTYNYAHLNRGIALYYG  124 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCTHHHHHHHHHHHHT
T ss_pred             HHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHh--------cCccccHHHHHHHHHHHHh
Confidence            48899999999988774     4688999999999999999999999876321        1111223345678888888


Q ss_pred             CCHHHHHHHHHHC
Q psy11525        163 GNISEAESILLQH  175 (244)
Q Consensus       163 G~~~eAe~~~l~~  175 (244)
                      |++++|...|.++
T Consensus       125 g~~~~A~~~~~~a  137 (275)
T 1xnf_A          125 GRDKLAQDDLLAF  137 (275)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH
Confidence            9998888888665

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.39  E-value=0.0027  Score=58.55  Aligned_cols=146  Identities=8%  Similarity=-0.062  Sum_probs=92.1

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC---------------------ChhHH-
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------QVDKV-  139 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------d~~~v-  139 (244)
                      -|...|++++|.++.+.+     .....|..++....+.++++.|...|.++-                     +++.. 
T Consensus       382 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  461 (597)
T 2xpi_A          382 YYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN  461 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence            357888888888877754     356788888888888888888888776531                     11111 


Q ss_pred             HHHHHhhCC--Cc--HHHHHHHHHHHcCCHHHHHHHHHHCC--------CH-------HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        140 MYINHIKGI--PV--KAAQQAEMYLLGGNISEAESILLQHG--------LI-------FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       140 ~~l~~i~~~--~~--~~~~~A~ia~~~G~~~eAe~~~l~~g--------~~-------~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ..++++...  .+  ....+|.++...|++++|.++|.++-        .+       .....+|...|++++|++..++
T Consensus       462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (597)
T 2xpi_A          462 EYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ  541 (597)
T ss_dssp             HHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            122222211  11  12457888888999999999888751        22       2236778888999999887765


Q ss_pred             ---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        201 ---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       201 ---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                         .++.-..+.......+...|+ .++.+.|+++.
T Consensus       542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  577 (597)
T 2xpi_A          542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESL  577 (597)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence               344333444444444555555 56666676653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.36  E-value=0.01  Score=46.65  Aligned_cols=80  Identities=11%  Similarity=-0.043  Sum_probs=48.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHhc---CC-chhHHHHHHHHHHHHcC
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHG-----LI---FRAIQVSILTHNWDRALELALRH---KT-HIDTVLYQRKKYLDNLE  220 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~~---~~-~~~~vl~~r~~yl~~~~  220 (244)
                      ...|.++...|++++|...|.++-     .+   .....++..++++++|++..++.   .+ .....+.....++...|
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALG  196 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            456777778888888888776541     11   12245677788888887766542   23 33344455555666677


Q ss_pred             CcccHHHHHhcc
Q psy11525        221 KIETNEKFLRLQ  232 (244)
Q Consensus       221 ~~e~~~~f~~~~  232 (244)
                      ..+....|.+..
T Consensus       197 ~~~~a~~~~~~~  208 (225)
T 2vq2_A          197 NAQAAYEYEAQL  208 (225)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHH
Confidence            766666665553

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.0058  Score=49.29  Aligned_cols=146  Identities=8%  Similarity=-0.023  Sum_probs=100.9

Q ss_pred             HHHHcCCHHHHHHHHhccC-----C-------HHHHHHHHHHHHHcCCHHHHHHHHHHhCChh--------------HHH
Q psy11525         87 SYAASHSWPQALSLCRTLN-----D-------DILWACLAGMATYSRDLATSEEAYAAIEQVD--------------KVM  140 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~~-----~-------~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~--------------~v~  140 (244)
                      -+...|++++|.+.++...     .       ...|..+|......++++.|..+|.+.-...              .+.
T Consensus        47 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~  126 (258)
T 3uq3_A           47 AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELK  126 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHH
Confidence            3588999999999887741     1       5889999999999999999999988654311              112


Q ss_pred             HHHHhhCCCcH----HHHHHHHHHHcCCHHHHHHHHHHCC-----C---HHHHHHHHHHhcCHHHHHHHHHh---cCCch
Q psy11525        141 YINHIKGIPVK----AAQQAEMYLLGGNISEAESILLQHG-----L---IFRAIQVSILTHNWDRALELALR---HKTHI  205 (244)
Q Consensus       141 ~l~~i~~~~~~----~~~~A~ia~~~G~~~eAe~~~l~~g-----~---~~~Ai~m~~~l~~W~~Al~LA~~---~~~~~  205 (244)
                      .++++......    ....|.++...|++++|...|.++-     .   ....-..+..+++|++|++..++   .++..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~  206 (258)
T 3uq3_A          127 KAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF  206 (258)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH
Confidence            23333333222    2468999999999999999998751     1   12235678899999999887655   34443


Q ss_pred             hHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        206 DTVLYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       206 ~~vl~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                      ...+......+...|+ .++.+.|+++.
T Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          207 VRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4455555555656666 56666666653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=97.35  E-value=0.0082  Score=48.73  Aligned_cols=79  Identities=14%  Similarity=0.027  Sum_probs=47.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCCC----HHH------HHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHc
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHGL----IFR------AIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNL  219 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g~----~~~------Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~  219 (244)
                      ...|.++...|++++|.+.|.++-.    +..      .-.++...+++++|++..++   ..+.....+......+...
T Consensus       109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  188 (252)
T 2ho1_A          109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKE  188 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHc
Confidence            3467788888888888888877633    221      23466778888888776654   2333233334444444444


Q ss_pred             CC-cccHHHHHhc
Q psy11525        220 EK-IETNEKFLRL  231 (244)
Q Consensus       220 ~~-~e~~~~f~~~  231 (244)
                      |+ .++...|.++
T Consensus       189 g~~~~A~~~~~~~  201 (252)
T 2ho1_A          189 REYVPARQYYDLF  201 (252)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            54 4555556554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=97.32  E-value=0.011  Score=46.57  Aligned_cols=134  Identities=9%  Similarity=0.049  Sum_probs=75.1

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChh--HHHHHHHhhCCCcHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVD--KVMYINHIKGIPVKAAQQAEMYL  160 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~--~v~~l~~i~~~~~~~~~~A~ia~  160 (244)
                      +...|++++|.+..+..     .....|..+|......++++.|..+|.+.-...  ...          .....|.++.
T Consensus        18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~~l~~~~~   87 (225)
T 2vq2_A           18 YMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE----------INNNYGWFLC   87 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----------HHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH----------HHHHHHHHHH
Confidence            46777777777766653     346677777777777788777777776542211  111          1234566677


Q ss_pred             Hc-CCHHHHHHHHHH-----CCC-----HHHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccH
Q psy11525        161 LG-GNISEAESILLQ-----HGL-----IFRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETN  225 (244)
Q Consensus       161 ~~-G~~~eAe~~~l~-----~g~-----~~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~  225 (244)
                      .. |++++|...|.+     ...     ....-..+...+++++|++..++   ..+.....+......+...|+ .++.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  167 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDAD  167 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHH
Confidence            77 777777776643     221     12223456677777777665543   223222333333333333443 4555


Q ss_pred             HHHHhc
Q psy11525        226 EKFLRL  231 (244)
Q Consensus       226 ~~f~~~  231 (244)
                      +.|+++
T Consensus       168 ~~~~~~  173 (225)
T 2vq2_A          168 YYFKKY  173 (225)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.30  E-value=0.004  Score=53.23  Aligned_cols=83  Identities=13%  Similarity=0.087  Sum_probs=58.1

Q ss_pred             CCCeEEeEeCCEEEEEecCCcEEEee-------cCcc-HHHH----HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHH
Q psy11525         52 KSPSIVSFVKNHLTIRRYDGTVINYP-------ISPY-ISVL----HSYAASHSWPQALSLCRTL-----NDDILWACLA  114 (244)
Q Consensus        52 ~~~~~v~f~g~~v~~~~~~G~~~~~~-------~~p~-~~~l----~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA  114 (244)
                      ..|+++.|.+|++.-+-. |......       ..|- .+.+    ..++..|++++|....+..     .+...|..||
T Consensus        80 ~~Pt~~~~~~G~~~~~~~-g~~~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la  158 (287)
T 3qou_A           80 AIPTVYLFQNGQPVDGFQ-GPQPEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLA  158 (287)
T ss_dssp             SSSEEEEEETTEEEEEEE-SCCCHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             CCCeEEEEECCEEEEEee-CCCCHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHH
Confidence            566788888886654332 3321110       1132 2222    2358999999999988875     5688999999


Q ss_pred             HHHHHcCCHHHHHHHHHHhCC
Q psy11525        115 GMATYSRDLATSEEAYAAIEQ  135 (244)
Q Consensus       115 ~~Al~~~~l~~A~~~y~~l~d  135 (244)
                      ...+..++++.|+.+|.++-.
T Consensus       159 ~~~~~~g~~~~A~~~l~~~~~  179 (287)
T 3qou_A          159 ETLIALNRSEDAEAVLXTIPL  179 (287)
T ss_dssp             HHHHHTTCHHHHHHHHTTSCG
T ss_pred             HHHHHCCCHHHHHHHHHhCch
Confidence            999999999999999988743

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.28  E-value=0.01  Score=47.58  Aligned_cols=137  Identities=7%  Similarity=-0.096  Sum_probs=94.5

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +...|++++|.+.++..     .....|..+|......++++.|...|.+.-..        -..........|.++...
T Consensus        67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~  138 (243)
T 2q7f_A           67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--------GMENGDLFYMLGTVLVKL  138 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TCCSHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHh
Confidence            48899999999988774     46788999999999999999999888764211        111122335678999999


Q ss_pred             CCHHHHHHHHHHCC-----CHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHh
Q psy11525        163 GNISEAESILLQHG-----LIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLR  230 (244)
Q Consensus       163 G~~~eAe~~~l~~g-----~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~  230 (244)
                      |++++|...|.++-     .+.   ..-.++...+++++|++..++   ..+....++......+...|+ .++.+.|++
T Consensus       139 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  218 (243)
T 2q7f_A          139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK  218 (243)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999998752     222   224567889999999887765   233323444445555555555 566666666


Q ss_pred             cc
Q psy11525        231 LQ  232 (244)
Q Consensus       231 ~~  232 (244)
                      +.
T Consensus       219 ~~  220 (243)
T 2q7f_A          219 AI  220 (243)
T ss_dssp             HH
T ss_pred             HH
Confidence            63

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.27  E-value=0.0092  Score=50.36  Aligned_cols=77  Identities=12%  Similarity=-0.070  Sum_probs=42.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cc
Q psy11525        156 AEMYLLGGNISEAESILLQHG-----LI---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IE  223 (244)
Q Consensus       156 A~ia~~~G~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e  223 (244)
                      |.++...|++++|.+.|.+.-     .+   ...-.++..+++|++|++..++   ..+............+...|+ .+
T Consensus       127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  206 (359)
T 3ieg_A          127 ALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHEL  206 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            667777777777777776641     11   1224566777778877766554   233323333333333333444 55


Q ss_pred             cHHHHHhcc
Q psy11525        224 TNEKFLRLQ  232 (244)
Q Consensus       224 ~~~~f~~~~  232 (244)
                      +...|+++.
T Consensus       207 A~~~~~~a~  215 (359)
T 3ieg_A          207 SLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=97.25  E-value=0.0062  Score=59.79  Aligned_cols=137  Identities=11%  Similarity=0.020  Sum_probs=98.1

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      |.+.|++++|.+..+..     +....|..||....+.++++.|+.+|.+.        |+.--+..+-...+|.++..+
T Consensus        19 ~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~A--------l~l~P~~~~a~~nLg~~l~~~   90 (723)
T 4gyw_A           19 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA--------IRISPTFADAYSNMGNTLKEM   90 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------HHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHhCCCCHHHHHHHHHHHHHc
Confidence            48999999999988774     57889999999999999999999999763        111011122345689999999


Q ss_pred             CCHHHHHHHHHHC-----CCHHH---HHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHh
Q psy11525        163 GNISEAESILLQH-----GLIFR---AIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLR  230 (244)
Q Consensus       163 G~~~eAe~~~l~~-----g~~~~---Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~  230 (244)
                      |++++|.+.|.++     +.++.   -=.+|.++|++++|++.-++   .++.....+.....-+...|+ .+..+.|++
T Consensus        91 g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~k  170 (723)
T 4gyw_A           91 QDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK  170 (723)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence            9999999999775     22211   13468889999999876543   556545555555555555555 677777877


Q ss_pred             cc
Q psy11525        231 LQ  232 (244)
Q Consensus       231 ~~  232 (244)
                      +.
T Consensus       171 al  172 (723)
T 4gyw_A          171 LV  172 (723)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.23  E-value=0.018  Score=43.60  Aligned_cols=138  Identities=13%  Similarity=-0.031  Sum_probs=95.9

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .+...|++++|....+..     .....|..+|......++++.|..+|.+.-..        -..........|.++..
T Consensus        17 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           17 SHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--------APDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHH
Confidence            358899999999999875     35788999999999999999999888764211        11111223567889999


Q ss_pred             cCCHHHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHH
Q psy11525        162 GGNISEAESILLQH-----GLIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFL  229 (244)
Q Consensus       162 ~G~~~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~  229 (244)
                      .|++++|.+.|.++     +.+.   .--.++...+++++|++..++   ..+....+.......+...|+ .++.+.|+
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  168 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK  168 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999764     2222   124678889999999888765   233333444455555556666 56666666


Q ss_pred             hcc
Q psy11525        230 RLQ  232 (244)
Q Consensus       230 ~~~  232 (244)
                      ++.
T Consensus       169 ~~~  171 (186)
T 3as5_A          169 KAN  171 (186)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.22  E-value=0.0066  Score=50.86  Aligned_cols=145  Identities=10%  Similarity=0.007  Sum_probs=89.2

Q ss_pred             HHHcC-CHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC---------------------ChhH-H
Q psy11525         88 YAASH-SWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------QVDK-V  139 (244)
Q Consensus        88 ~l~~~-~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------d~~~-v  139 (244)
                      +...| ++++|.+..+..     .....|..+|......++++.|..+|.+.-                     ++.. +
T Consensus       100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  179 (330)
T 3hym_B          100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE  179 (330)
T ss_dssp             HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH
Confidence            47777 888888877663     345678888888888888888877766432                     2221 1


Q ss_pred             HHHHHhhCCCc----HHHHHHHHHHHcCCHHHHHHHHHHCCCH-----------------HHHHHHHHHhcCHHHHHHHH
Q psy11525        140 MYINHIKGIPV----KAAQQAEMYLLGGNISEAESILLQHGLI-----------------FRAIQVSILTHNWDRALELA  198 (244)
Q Consensus       140 ~~l~~i~~~~~----~~~~~A~ia~~~G~~~eAe~~~l~~g~~-----------------~~Ai~m~~~l~~W~~Al~LA  198 (244)
                      ..++++.....    ....+|.++...|++++|...|.++-..                 ...-..+..++++++|++..
T Consensus       180 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  259 (330)
T 3hym_B          180 RFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYH  259 (330)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            23333333321    1245788888888888888888765322                 12345677888888887766


Q ss_pred             Hh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        199 LR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       199 ~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                      ++   .++....++......+...|+ .++.+.|+++.
T Consensus       260 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (330)
T 3hym_B          260 RQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL  297 (330)
T ss_dssp             HHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred             HHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            54   233333444444555555555 56666666653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=97.19  E-value=0.013  Score=49.01  Aligned_cols=138  Identities=9%  Similarity=-0.010  Sum_probs=85.3

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcC-CHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSR-DLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~-~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      +...|++++|...+...     .....|..+|......+ +++.|..+|.+.-...        ..........|.++..
T Consensus        66 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~  137 (330)
T 3hym_B           66 LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE--------KTYGPAWIAYGHSFAV  137 (330)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC--------TTCTHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHH
Confidence            35666666666666553     34566666776666666 6666666655432110        1112234568899999


Q ss_pred             cCCHHHHHHHHHHCCC--------HHHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHH
Q psy11525        162 GGNISEAESILLQHGL--------IFRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFL  229 (244)
Q Consensus       162 ~G~~~eAe~~~l~~g~--------~~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~  229 (244)
                      .|++++|.+.|.++-.        ....-.+|...+++++|++..++   ..+....++......+...|+ .++.+.|+
T Consensus       138 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  217 (330)
T 3hym_B          138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFL  217 (330)
T ss_dssp             HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHH
Confidence            9999999999877522        11234568889999999887765   333334445555555555555 56667776


Q ss_pred             hccc
Q psy11525        230 RLQS  233 (244)
Q Consensus       230 ~~~~  233 (244)
                      ++.+
T Consensus       218 ~a~~  221 (330)
T 3hym_B          218 DALE  221 (330)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=97.18  E-value=0.0079  Score=55.39  Aligned_cols=149  Identities=9%  Similarity=-0.021  Sum_probs=89.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC-----Chh---------------
Q psy11525         83 SVLHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE-----QVD---------------  137 (244)
Q Consensus        83 ~~l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~-----d~~---------------  137 (244)
                      ....-+...|++++|.++.+.+     .....|..+|....+.++++.|..+|.++-     +..               
T Consensus       344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  423 (597)
T 2xpi_A          344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEH  423 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            3344468999999999998875     468899999999999999999999988642     111               


Q ss_pred             -H-HHHHHHhhCCC----cHHHHHHHHHHHcCCHHHHHHHHHHC-----CC---HHHHHHHHHHhcCHHHHHHHHHhc--
Q psy11525        138 -K-VMYINHIKGIP----VKAAQQAEMYLLGGNISEAESILLQH-----GL---IFRAIQVSILTHNWDRALELALRH--  201 (244)
Q Consensus       138 -~-v~~l~~i~~~~----~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~---~~~Ai~m~~~l~~W~~Al~LA~~~--  201 (244)
                       . +..++++....    ......|.++...|++++|.++|.+.     ..   +..-..+|...|++++|+++-++.  
T Consensus       424 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  503 (597)
T 2xpi_A          424 DQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALL  503 (597)
T ss_dssp             HHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence             1 11222222211    11234566677777777777777653     11   222355667777777776665543  


Q ss_pred             -------CCc-hhHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525        202 -------KTH-IDTVLYQRKKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       202 -------~~~-~~~vl~~r~~yl~~~~~-~e~~~~f~~~  231 (244)
                             ++. ...++......+...|+ .++.+.|+++
T Consensus       504 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             HHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                   222 12333333444444444 4555555554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=97.18  E-value=0.012  Score=49.58  Aligned_cols=79  Identities=14%  Similarity=0.007  Sum_probs=54.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHC-----CCHHH-------HHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHH
Q psy11525        154 QQAEMYLLGGNISEAESILLQH-----GLIFR-------AIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDN  218 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l~~-----g~~~~-------Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~  218 (244)
                      ..|.++...|++++|...|.++     ..+..       --..+..++++++|++..++   .++.-..++......+..
T Consensus       239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (359)
T 3ieg_A          239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLI  318 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            3488899999999999998864     22211       23578889999999887765   344434555566666666


Q ss_pred             cCC-cccHHHHHhcc
Q psy11525        219 LEK-IETNEKFLRLQ  232 (244)
Q Consensus       219 ~~~-~e~~~~f~~~~  232 (244)
                      .|+ .++.+.|+++.
T Consensus       319 ~g~~~~A~~~~~~a~  333 (359)
T 3ieg_A          319 EEMYDEAIQDYEAAQ  333 (359)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH
Confidence            666 56777777664

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=97.13  E-value=0.0047  Score=53.38  Aligned_cols=84  Identities=11%  Similarity=0.006  Sum_probs=56.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHH
Q psy11525         83 SVLHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAE  157 (244)
Q Consensus        83 ~~l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~  157 (244)
                      ..-..+...|++++|.+..+..     .....|..+|......++++.|+.+|.+.-...        ..........|.
T Consensus        70 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~  141 (365)
T 4eqf_A           70 EEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--------PNNLKALMALAV  141 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHH
Confidence            3445568999999999998875     568899999999999999999999987642110        000111234455


Q ss_pred             HHHHcCCHHHHHHHHHH
Q psy11525        158 MYLLGGNISEAESILLQ  174 (244)
Q Consensus       158 ia~~~G~~~eAe~~~l~  174 (244)
                      ++...|++++|.+.|.+
T Consensus       142 ~~~~~g~~~~A~~~~~~  158 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKN  158 (365)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHH
Confidence            55555666655555544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=97.12  E-value=0.01  Score=50.97  Aligned_cols=70  Identities=16%  Similarity=0.190  Sum_probs=42.4

Q ss_pred             cCCHHHHHHHHHHC-----CCHHH---HHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCCc-cc-HHHH
Q psy11525        162 GGNISEAESILLQH-----GLIFR---AIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEKI-ET-NEKF  228 (244)
Q Consensus       162 ~G~~~eAe~~~l~~-----g~~~~---Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~~-e~-~~~f  228 (244)
                      .|++++|..+|.+.     +.+..   .-..+..+|+|++|.+.-++   .++.-.+++......+...|+. |. ...|
T Consensus       179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~  258 (291)
T 3mkr_A          179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYL  258 (291)
T ss_dssp             TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            47888888888664     12221   12367888999998776654   3444445565666666666665 33 3455


Q ss_pred             Hhc
Q psy11525        229 LRL  231 (244)
Q Consensus       229 ~~~  231 (244)
                      +++
T Consensus       259 ~~~  261 (291)
T 3mkr_A          259 SQL  261 (291)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=97.03  E-value=0.011  Score=51.61  Aligned_cols=80  Identities=8%  Similarity=-0.026  Sum_probs=39.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCCC-----H---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHGL-----I---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK  221 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g~-----~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~  221 (244)
                      ...|.++...|++++|.+.|.++-.     +   ..--.++..++++++|++.-++   .++............+...|+
T Consensus       105 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  184 (388)
T 1w3b_A          105 INLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE  184 (388)
T ss_dssp             HHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3455666666666666666654310     0   0112345556777777665433   233322333333333344444


Q ss_pred             -cccHHHHHhcc
Q psy11525        222 -IETNEKFLRLQ  232 (244)
Q Consensus       222 -~e~~~~f~~~~  232 (244)
                       .++.+.|+++.
T Consensus       185 ~~~A~~~~~~al  196 (388)
T 1w3b_A          185 IWLAIHHFEKAV  196 (388)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence             45666666653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.03  E-value=0.0071  Score=47.35  Aligned_cols=79  Identities=13%  Similarity=-0.018  Sum_probs=58.5

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +...|++++|....+..     .+...|..||......++++-|..+|.+.-        +.--..++.....|.++...
T Consensus        46 ~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al--------~l~P~~~~~~~~lg~~~~~l  117 (151)
T 3gyz_A           46 FYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF--------ALGKNDYTPVFHTGQCQLRL  117 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHSSSCCHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH--------hhCCCCcHHHHHHHHHHHHc
Confidence            47889999999888774     568889999999999999999998887631        11112233445678888888


Q ss_pred             CCHHHHHHHHHH
Q psy11525        163 GNISEAESILLQ  174 (244)
Q Consensus       163 G~~~eAe~~~l~  174 (244)
                      |++++|...|.+
T Consensus       118 g~~~eA~~~~~~  129 (151)
T 3gyz_A          118 KAPLKAKECFEL  129 (151)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            888888877754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=97.02  E-value=0.012  Score=44.55  Aligned_cols=106  Identities=8%  Similarity=-0.136  Sum_probs=77.8

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      -+...|++++|....+..     .....|..+|......++++.|..+|.+.-..        -..........|.++..
T Consensus        51 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~  122 (186)
T 3as5_A           51 AYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--------NPINFNVRFRLGVALDN  122 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CcHhHHHHHHHHHHHHH
Confidence            358899999999988774     46789999999999999999999888764211        11111223567899999


Q ss_pred             cCCHHHHHHHHHHC-----CCH---HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        162 GGNISEAESILLQH-----GLI---FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       162 ~G~~~eAe~~~l~~-----g~~---~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      .|++++|...|.++     +.+   .....++...+++++|++..++
T Consensus       123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  169 (186)
T 3as5_A          123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK  169 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999999774     121   2234577888899998876553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.01  E-value=0.015  Score=46.05  Aligned_cols=105  Identities=16%  Similarity=0.180  Sum_probs=78.5

Q ss_pred             HHHcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCH
Q psy11525         88 YAASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNI  165 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~  165 (244)
                      +...|+|++|....+..  .....|..+|......++++.|..+|.+.-..        -..........|.++...|++
T Consensus        16 ~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcccH
Confidence            47899999999998875  46789999999999999999999988763211        111122335689999999999


Q ss_pred             HHHHHHHHHCCC------------------------HHHHHHHHHHhcCHHHHHHHHHh
Q psy11525        166 SEAESILLQHGL------------------------IFRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       166 ~eAe~~~l~~g~------------------------~~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ++|.+.|.++-.                        ...--..|..+++|++|++..++
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999977532                        11223567888999999776554

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=96.97  E-value=0.0087  Score=47.95  Aligned_cols=138  Identities=13%  Similarity=0.033  Sum_probs=86.8

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .++..|++++|.......     .....|..+|......++++.|..+|.+.-+.        -..........|.++..
T Consensus        32 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           32 RGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGAGNVYVV  103 (243)
T ss_dssp             ----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHH
Confidence            357788999888777664     46789999999999999999999988764211        11111223567899999


Q ss_pred             cCCHHHHHHHHHHCC-----CHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcC-CcccHHHHH
Q psy11525        162 GGNISEAESILLQHG-----LIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLE-KIETNEKFL  229 (244)
Q Consensus       162 ~G~~~eAe~~~l~~g-----~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~-~~e~~~~f~  229 (244)
                      .|++++|.+.|.++-     .+.   ..-.++...++|++|++..++   ..+....+.......+...| ..++...|.
T Consensus       104 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  183 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA  183 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            999999999998641     221   235678899999999987765   23332334444444444444 466777777


Q ss_pred             hcc
Q psy11525        230 RLQ  232 (244)
Q Consensus       230 ~~~  232 (244)
                      ++.
T Consensus       184 ~~~  186 (243)
T 2q7f_A          184 AVT  186 (243)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=96.97  E-value=0.017  Score=51.07  Aligned_cols=77  Identities=16%  Similarity=0.025  Sum_probs=52.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHC-----CCH-------HHHHHHHHHhcCHHHHHHHHHhc---CCchhHHHHHHHHHHHHcC
Q psy11525        156 AEMYLLGGNISEAESILLQH-----GLI-------FRAIQVSILTHNWDRALELALRH---KTHIDTVLYQRKKYLDNLE  220 (244)
Q Consensus       156 A~ia~~~G~~~eAe~~~l~~-----g~~-------~~Ai~m~~~l~~W~~Al~LA~~~---~~~~~~vl~~r~~yl~~~~  220 (244)
                      |.++...|++++|...|.++     +.+       .....++..++++++|++..++.   .+....++......+...|
T Consensus       264 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~  343 (450)
T 2y4t_A          264 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE  343 (450)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence            88888999999999999775     222       22256788889999998887652   3443455555555555555


Q ss_pred             C-cccHHHHHhcc
Q psy11525        221 K-IETNEKFLRLQ  232 (244)
Q Consensus       221 ~-~e~~~~f~~~~  232 (244)
                      + .++...|+++.
T Consensus       344 ~~~~A~~~~~~al  356 (450)
T 2y4t_A          344 MYDEAIQDYETAQ  356 (450)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            5 56666666663

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=96.96  E-value=0.012  Score=41.92  Aligned_cols=80  Identities=14%  Similarity=0.135  Sum_probs=53.0

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      -+...|++++|.++.+..     .....|..+|......++++.|...|.+.-..        -..........|.++..
T Consensus        10 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A           10 AYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHT
T ss_pred             HHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--------CCCchHHHHHHHHHHHH
Confidence            357788999988877653     45677888888888888888888887753211        00111122345667777


Q ss_pred             cCCHHHHHHHHHH
Q psy11525        162 GGNISEAESILLQ  174 (244)
Q Consensus       162 ~G~~~eAe~~~l~  174 (244)
                      .|++++|.+.|.+
T Consensus        82 ~~~~~~A~~~~~~   94 (136)
T 2fo7_A           82 QGDYDEAIEYYQK   94 (136)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHH
Confidence            7777777776654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=96.96  E-value=0.016  Score=50.54  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=14.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Q psy11525        153 AQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      ...|.++...|++++|.+.|.+
T Consensus       139 ~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A          139 SDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHH
Confidence            3456666677777777776644

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.94  E-value=0.026  Score=48.25  Aligned_cols=79  Identities=15%  Similarity=0.008  Sum_probs=39.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-
Q psy11525        154 QQAEMYLLGGNISEAESILLQHG-----LI---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-  221 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-  221 (244)
                      ..|.++...|++++|...|.++-     .+   ..--.++..++++++|++..++   ..+....++......+...|+ 
T Consensus       222 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  301 (368)
T 1fch_A          222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH  301 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCH
Confidence            35666666677777666665531     11   1123455666777776665544   223322333333333333333 


Q ss_pred             cccHHHHHhcc
Q psy11525        222 IETNEKFLRLQ  232 (244)
Q Consensus       222 ~e~~~~f~~~~  232 (244)
                      .++.+.|+++.
T Consensus       302 ~~A~~~~~~al  312 (368)
T 1fch_A          302 REAVEHFLEAL  312 (368)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            45555555553

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.92  E-value=0.034  Score=46.31  Aligned_cols=145  Identities=14%  Similarity=0.023  Sum_probs=90.6

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC----------------------------
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE----------------------------  134 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~----------------------------  134 (244)
                      +...|++++|....+..     .....|..+|......++++.|..+|.+.-                            
T Consensus        65 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (327)
T 3cv0_A           65 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSE  144 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------
T ss_pred             HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHH
Confidence            47788888888877664     456778888888888888888888776531                            


Q ss_pred             C--------hh-HHHHHHHhhCCC----cHHHHHHHHHHHcCCHHHHHHHHHHC-----CCH---HHHHHHHHHhcCHHH
Q psy11525        135 Q--------VD-KVMYINHIKGIP----VKAAQQAEMYLLGGNISEAESILLQH-----GLI---FRAIQVSILTHNWDR  193 (244)
Q Consensus       135 d--------~~-~v~~l~~i~~~~----~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~---~~Ai~m~~~l~~W~~  193 (244)
                      .        +. .+..++++....    ......|.++...|++++|.+.|.++     +.+   ...-.++...++|++
T Consensus       145 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  224 (327)
T 3cv0_A          145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQE  224 (327)
T ss_dssp             -CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Confidence            1        00 112222222221    12245788889999999999998764     111   223567888999999


Q ss_pred             HHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        194 ALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       194 Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                      |++..++   ..+............+...|+ .++.+.|+++.
T Consensus       225 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  267 (327)
T 3cv0_A          225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI  267 (327)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            9887655   233333344444444455555 56666666653

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=96.89  E-value=0.06  Score=44.78  Aligned_cols=83  Identities=13%  Similarity=-0.055  Sum_probs=57.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHH
Q psy11525         84 VLHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEM  158 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~i  158 (244)
                      .-..++..|++++|..+.+..     .....|..+|......++++.|..+|.+.-...        ..........|.+
T Consensus        27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~   98 (327)
T 3cv0_A           27 EGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVHAALAVS   98 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------cCCHHHHHHHHHH
Confidence            344568999999999988775     467899999999999999999999887642110        0011122345666


Q ss_pred             HHHcCCHHHHHHHHHH
Q psy11525        159 YLLGGNISEAESILLQ  174 (244)
Q Consensus       159 a~~~G~~~eAe~~~l~  174 (244)
                      +...|++++|.+.|.+
T Consensus        99 ~~~~~~~~~A~~~~~~  114 (327)
T 3cv0_A           99 HTNEHNANAALASLRA  114 (327)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHH
Confidence            6666676666665544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=96.86  E-value=0.01  Score=45.54  Aligned_cols=122  Identities=11%  Similarity=-0.008  Sum_probs=65.2

Q ss_pred             cCCHHHHHHHHhcc-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHHcCC
Q psy11525         91 SHSWPQALSLCRTL-N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLLGGN  164 (244)
Q Consensus        91 ~~~~~~A~~~~~~~-~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~~G~  164 (244)
                      .|++++|+...... .    ....|-.||....+.++++.|+.+|.+.=         ++.. ..+.....|.++...|+
T Consensus        10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al---------~~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI---------NVQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHHcCc
Confidence            44555665554442 1    23344556666666666666666665421         1111 11122445666666666


Q ss_pred             HHHHHHHHHHC-----CCHHHH---HHHHHHhcCHHHHH----HHHHhcCCchhHHHHHHHHHHHHcCC
Q psy11525        165 ISEAESILLQH-----GLIFRA---IQVSILTHNWDRAL----ELALRHKTHIDTVLYQRKKYLDNLEK  221 (244)
Q Consensus       165 ~~eAe~~~l~~-----g~~~~A---i~m~~~l~~W~~Al----~LA~~~~~~~~~vl~~r~~yl~~~~~  221 (244)
                      +++|...|.++     +.++.-   -.+|..++++++|.    +-|.+.+|.-..+...+.+.+...|+
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            66666666554     222211   23455666665432    33555566656777788888877775

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=96.86  E-value=0.014  Score=50.21  Aligned_cols=145  Identities=14%  Similarity=-0.036  Sum_probs=98.2

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCCh--------------------------
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQV--------------------------  136 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~--------------------------  136 (244)
                      |...|++++|....+..     .....|..+|......++++.|..+|.+.-..                          
T Consensus       109 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~  188 (365)
T 4eqf_A          109 QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV  188 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHh
Confidence            48899999999988774     56889999999999999999999988764221                          


Q ss_pred             -----hH-HHHHHHhhCC-C---c--HHHHHHHHHHHcCCHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHH
Q psy11525        137 -----DK-VMYINHIKGI-P---V--KAAQQAEMYLLGGNISEAESILLQHG-----LI---FRAIQVSILTHNWDRALE  196 (244)
Q Consensus       137 -----~~-v~~l~~i~~~-~---~--~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~  196 (244)
                           .. +..++++..+ +   +  .....|.++...|++++|.+.|.++-     .+   ..--..|..++++++|++
T Consensus       189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  268 (365)
T 4eqf_A          189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVE  268 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence                 11 1222222222 1   1  22457889999999999999997741     11   223567888999999988


Q ss_pred             HHHh---cCCchhHHHHHHHHHHHHcC-CcccHHHHHhcc
Q psy11525        197 LALR---HKTHIDTVLYQRKKYLDNLE-KIETNEKFLRLQ  232 (244)
Q Consensus       197 LA~~---~~~~~~~vl~~r~~yl~~~~-~~e~~~~f~~~~  232 (244)
                      ..++   ..+....++......+...| ..++.+.|+++.
T Consensus       269 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  308 (365)
T 4eqf_A          269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTAL  308 (365)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            7654   34443344444444444444 467777787774

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.86  E-value=0.013  Score=48.53  Aligned_cols=140  Identities=13%  Similarity=0.065  Sum_probs=92.3

Q ss_pred             HHHcCCHHHHHHHHhccC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc----
Q psy11525         88 YAASHSWPQALSLCRTLN-------------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV----  150 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~-------------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~----  150 (244)
                      |...|++++|..+.+...             ....|..+|......++++.|..+|.+.-     ...++......    
T Consensus        37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~  111 (311)
T 3nf1_A           37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDAL-----AIREKTLGKDHPAVA  111 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHhCCCChHHH
Confidence            588999999998886641             23568889999999999999999987642     22333311111    


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHCCCH----------HHH------HHHHHHhcCHHHHHHHHHhc-----------C
Q psy11525        151 -KAAQQAEMYLLGGNISEAESILLQHGLI----------FRA------IQVSILTHNWDRALELALRH-----------K  202 (244)
Q Consensus       151 -~~~~~A~ia~~~G~~~eAe~~~l~~g~~----------~~A------i~m~~~l~~W~~Al~LA~~~-----------~  202 (244)
                       ....+|.++...|++++|...|.++-..          ..+      -.++...++|++|++..++-           .
T Consensus       112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  191 (311)
T 3nf1_A          112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD  191 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence             2346789999999999999998875332          222      34677889999988765542           1


Q ss_pred             CchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        203 THIDTVLYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       203 ~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                      +..-.++......+...|+ .++.+.|.++.
T Consensus       192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          192 PNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            2222333344444445555 67777777664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.86  E-value=0.011  Score=48.47  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=15.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        153 AQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      ...|.++...|++++|.+.|.++
T Consensus       112 ~~l~~~~~~~~~~~~A~~~~~~a  134 (272)
T 3u4t_A          112 GQIGSYFYNKGNFPLAIQYMEKQ  134 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHGGG
T ss_pred             HHHHHHHHHccCHHHHHHHHHHH
Confidence            45666666777777777776665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.81  E-value=0.016  Score=43.68  Aligned_cols=79  Identities=18%  Similarity=0.113  Sum_probs=60.0

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      ++..|+|++|....+..     .+...|..+|......++++.|..+|.+.-.        .--..+......|.++...
T Consensus        28 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           28 QYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL--------MDINEPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCTHHHHHHHHHHHHT
T ss_pred             HHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--------cCCCCcHHHHHHHHHHHHc
Confidence            58999999999988774     5788999999999999999999999976321        1111223345678888888


Q ss_pred             CCHHHHHHHHHH
Q psy11525        163 GNISEAESILLQ  174 (244)
Q Consensus       163 G~~~eAe~~~l~  174 (244)
                      |++++|.+.|.+
T Consensus       100 g~~~~A~~~~~~  111 (142)
T 2xcb_A          100 GDLDGAESGFYS  111 (142)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            888888877643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=96.79  E-value=0.011  Score=50.74  Aligned_cols=131  Identities=7%  Similarity=-0.079  Sum_probs=76.9

Q ss_pred             HHcCCHHHHHHHHhcc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         89 AASHSWPQALSLCRTL-------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      ...+++++|.+..+.+       .....|-.+|......++++.|..+|.+-             ...+.....|.++..
T Consensus        76 ~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~~-------------~~~~~~~~l~~~~~~  142 (291)
T 3mkr_A           76 ASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQG-------------DSLECMAMTVQILLK  142 (291)
T ss_dssp             HCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTTC-------------CSHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC-------------CCHHHHHHHHHHHHH
Confidence            4455677777666542       14566677777777777777777776651             111223456778888


Q ss_pred             cCCHHHHHHHHHHCCC--HHHH--------HHHHHHhcCHHHHHHHHHhc---CCchhHHHHHHHHHHHHcCC-cccHHH
Q psy11525        162 GGNISEAESILLQHGL--IFRA--------IQVSILTHNWDRALELALRH---KTHIDTVLYQRKKYLDNLEK-IETNEK  227 (244)
Q Consensus       162 ~G~~~eAe~~~l~~g~--~~~A--------i~m~~~l~~W~~Al~LA~~~---~~~~~~vl~~r~~yl~~~~~-~e~~~~  227 (244)
                      .|++++|.+.|.+.-.  |+..        +.++...+++++|+.+-++.   .+.-..++......+...|+ .++.+.
T Consensus       143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~  222 (291)
T 3mkr_A          143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV  222 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888888888876521  1111        23333447788887665442   33333445555556666665 566666


Q ss_pred             HHhcc
Q psy11525        228 FLRLQ  232 (244)
Q Consensus       228 f~~~~  232 (244)
                      |+++.
T Consensus       223 l~~al  227 (291)
T 3mkr_A          223 LQEAL  227 (291)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=96.79  E-value=0.015  Score=44.70  Aligned_cols=79  Identities=20%  Similarity=0.141  Sum_probs=59.1

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +...|++++|....+..     .....|..+|......++++.|..+|.+.-.        .--..+......|.++...
T Consensus        31 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------l~p~~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           31 QYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--------MDIXEPRFPFHAAECLLQX  102 (148)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HSTTCTHHHHHHHHHHHHT
T ss_pred             HHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--------cCCCCchHHHHHHHHHHHc
Confidence            58899999999888764     5788999999999999999999999976321        1111223345678888888


Q ss_pred             CCHHHHHHHHHH
Q psy11525        163 GNISEAESILLQ  174 (244)
Q Consensus       163 G~~~eAe~~~l~  174 (244)
                      |++++|...|.+
T Consensus       103 g~~~~A~~~~~~  114 (148)
T 2vgx_A          103 GELAEAESGLFL  114 (148)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            888888776643

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=96.76  E-value=0.02  Score=43.00  Aligned_cols=80  Identities=10%  Similarity=0.013  Sum_probs=58.1

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +...|+|++|.......     .....|..+|......++++.|..+|.+.-...        ..........|.++...
T Consensus        23 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~   94 (166)
T 1a17_A           23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------KKYIKGYYRRAASNMAL   94 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHT
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHh
Confidence            57899999999887763     467889999999999999999988887532110        11112235678888888


Q ss_pred             CCHHHHHHHHHHC
Q psy11525        163 GNISEAESILLQH  175 (244)
Q Consensus       163 G~~~eAe~~~l~~  175 (244)
                      |++++|...|.++
T Consensus        95 ~~~~~A~~~~~~a  107 (166)
T 1a17_A           95 GKFRAALRDYETV  107 (166)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH
Confidence            8888888877654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=96.75  E-value=0.015  Score=45.32  Aligned_cols=52  Identities=17%  Similarity=0.146  Sum_probs=45.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy11525         83 SVLHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE  134 (244)
Q Consensus        83 ~~l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~  134 (244)
                      ..-..++..|++++|...++..     .....|..+|...+..++++.|+.+|.+.-
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~   67 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP   67 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence            3445579999999999999885     567899999999999999999999998764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=96.68  E-value=0.047  Score=46.61  Aligned_cols=147  Identities=10%  Similarity=-0.011  Sum_probs=90.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC---------------------ChhH
Q psy11525         85 LHSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------QVDK  138 (244)
Q Consensus        85 l~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------d~~~  138 (244)
                      -..+...|++++|....+..     .....|..+|......++++.|..+|.+.-                     ++..
T Consensus        71 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  150 (368)
T 1fch_A           71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ  150 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence            34467888888888877664     456788888888888888888887776432                     1111


Q ss_pred             H-HHHHHhhCCCc--HHH------------------HHHHHHHHcCCHHHHHHHHHHCC-------CH---HHHHHHHHH
Q psy11525        139 V-MYINHIKGIPV--KAA------------------QQAEMYLLGGNISEAESILLQHG-------LI---FRAIQVSIL  187 (244)
Q Consensus       139 v-~~l~~i~~~~~--~~~------------------~~A~ia~~~G~~~eAe~~~l~~g-------~~---~~Ai~m~~~  187 (244)
                      . ..++++.....  ...                  ..+.+. ..|++++|...|.++-       .+   ...-.+|..
T Consensus       151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~  229 (368)
T 1fch_A          151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  229 (368)
T ss_dssp             HHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH
Confidence            1 12222222111  000                  244454 8899999999998751       11   223567888


Q ss_pred             hcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        188 THNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       188 l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                      .++|++|++..++   ..+....++......+...|+ .++.+.|.++.
T Consensus       230 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  278 (368)
T 1fch_A          230 SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL  278 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999887654   334434455555555556665 56677777663

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.65  E-value=0.074  Score=47.39  Aligned_cols=46  Identities=7%  Similarity=0.022  Sum_probs=35.2

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      ++..|++++|...++..     .....|..+|......++++.|..+|.++
T Consensus        49 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~   99 (514)
T 2gw1_A           49 YVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL   99 (514)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            47788888888877764     45677888888888888888888888765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.64  E-value=0.029  Score=50.59  Aligned_cols=144  Identities=13%  Similarity=0.079  Sum_probs=76.8

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC---------------------ChhHH-HH
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE---------------------QVDKV-MY  141 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~---------------------d~~~v-~~  141 (244)
                      ...|++++|....+..     .....|..+|......++++.|..+|.+.-                     ++... ..
T Consensus       287 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  366 (537)
T 3fp2_A          287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF  366 (537)
T ss_dssp             CCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5566666666665543     345666666666666666666666554331                     11110 11


Q ss_pred             HHHhhC----CCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHH--------------HHHHHHHHh----------cCHHH
Q psy11525        142 INHIKG----IPVKAAQQAEMYLLGGNISEAESILLQHGLIF--------------RAIQVSILT----------HNWDR  193 (244)
Q Consensus       142 l~~i~~----~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~--------------~Ai~m~~~l----------~~W~~  193 (244)
                      ++++..    ........|.++...|++++|.+.|.++-...              ..-..+...          ++|++
T Consensus       367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  446 (537)
T 3fp2_A          367 FNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNA  446 (537)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHH
Confidence            111111    11223456778888888888888877641111              111455555          88888


Q ss_pred             HHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        194 ALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       194 Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                      |+...++   ..+....+.......+...|+ .++.+.|+++.
T Consensus       447 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  489 (537)
T 3fp2_A          447 AIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA  489 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            8776654   233333444444444455555 56666666653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.56  E-value=0.045  Score=41.89  Aligned_cols=80  Identities=11%  Similarity=0.004  Sum_probs=57.7

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .+...|+|++|....+..     .....|..+|......++++.|..+|.+.-..        --........+|.++..
T Consensus        20 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~   91 (164)
T 3sz7_A           20 AAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV--------DPKYSKAWSRLGLARFD   91 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence            358899999999887764     46889999999999999999998888753211        01111223567888888


Q ss_pred             cCCHHHHHHHHHH
Q psy11525        162 GGNISEAESILLQ  174 (244)
Q Consensus       162 ~G~~~eAe~~~l~  174 (244)
                      .|++++|...|.+
T Consensus        92 ~g~~~~A~~~~~~  104 (164)
T 3sz7_A           92 MADYKGAKEAYEK  104 (164)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHH
Confidence            8888888777653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.55  E-value=0.023  Score=42.43  Aligned_cols=78  Identities=13%  Similarity=0.114  Sum_probs=53.6

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLL  161 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~  161 (244)
                      |...|+|++|.+.....     .....|..+|......++++.|..+|.+.=         ++..- .+....+|.++..
T Consensus        23 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---------~~~p~~~~a~~~lg~~~~~   93 (126)
T 4gco_A           23 YFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI---------RLDSKFIKGYIRKAACLVA   93 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH---------HhhhhhhHHHHHHHHHHHH
Confidence            58888888888876653     467888888888888888888888776521         11111 1123457777777


Q ss_pred             cCCHHHHHHHHHH
Q psy11525        162 GGNISEAESILLQ  174 (244)
Q Consensus       162 ~G~~~eAe~~~l~  174 (244)
                      +|++++|.+.|.+
T Consensus        94 ~~~~~~A~~~~~~  106 (126)
T 4gco_A           94 MREWSKAQRAYED  106 (126)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            8887777776654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=96.53  E-value=0.037  Score=45.70  Aligned_cols=108  Identities=13%  Similarity=-0.003  Sum_probs=76.1

Q ss_pred             HHHcCCHHHHHHHHhccC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc----
Q psy11525         88 YAASHSWPQALSLCRTLN-------------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV----  150 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~-------------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~----  150 (244)
                      |...|++++|....+...             ....|..+|......++++.|..+|.+.-     ...+.+.....    
T Consensus        79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~  153 (311)
T 3nf1_A           79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-----EIREKVLGKDHPDVA  153 (311)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-----HHHHHhcCCCChHHH
Confidence            478899999998776631             24578889999999999999999988743     22222211111    


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHCCC----------HHHH------HHHHHHhcCHHHHHHHHHh
Q psy11525        151 -KAAQQAEMYLLGGNISEAESILLQHGL----------IFRA------IQVSILTHNWDRALELALR  200 (244)
Q Consensus       151 -~~~~~A~ia~~~G~~~eAe~~~l~~g~----------~~~A------i~m~~~l~~W~~Al~LA~~  200 (244)
                       .....|.++...|++++|...|.++-.          +..+      -.+|..++++++|++..++
T Consensus       154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE  220 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             224578899999999999998877622          2222      4567888999999876644

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.026  Score=41.11  Aligned_cols=80  Identities=11%  Similarity=0.070  Sum_probs=56.6

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .+...|+|++|.......     .....|..+|......++++.|..+|.+.-..        --.........|.++..
T Consensus        13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A           13 EYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--------DPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHH
Confidence            358899999998887663     46788999999999999999888888753211        01111223557788888


Q ss_pred             cCCHHHHHHHHHH
Q psy11525        162 GGNISEAESILLQ  174 (244)
Q Consensus       162 ~G~~~eAe~~~l~  174 (244)
                      .|++++|...|.+
T Consensus        85 ~~~~~~A~~~~~~   97 (126)
T 3upv_A           85 VKEYASALETLDA   97 (126)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHH
Confidence            8888887776644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.49  E-value=0.062  Score=41.45  Aligned_cols=120  Identities=11%  Similarity=0.058  Sum_probs=81.8

Q ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHHcCCHHHHHHHHHHC----CCH
Q psy11525        104 LNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLLGGNISEAESILLQH----GLI  178 (244)
Q Consensus       104 ~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~~G~~~eAe~~~l~~----g~~  178 (244)
                      +++...|..||......|+++-|+.+|.+.=         ++.. ..+.....|.++...|++++|...|.++    ...
T Consensus         2 ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al---------~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~   72 (184)
T 3vtx_A            2 GETTTIYMDIGDKKRTKGDFDGAIRAYKKVL---------KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS   72 (184)
T ss_dssp             --CHHHHHHHHHHHHHHTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC
T ss_pred             CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh
Confidence            5688999999999999999999999998631         1111 1122356799999999999999988765    111


Q ss_pred             HH----HHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        179 FR----AIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       179 ~~----Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                      ..    .-..+...++++.|.+...+   ..+.-..........+...|+ .++.+.|+++.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l  134 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI  134 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence            11    23567788999998876554   344434445555555555665 67777787764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.39  E-value=0.32  Score=39.95  Aligned_cols=42  Identities=17%  Similarity=0.111  Sum_probs=25.5

Q ss_pred             cCCHHHHHHHHhc---cCCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q psy11525         91 SHSWPQALSLCRT---LNDDILWACLAGMATY----SRDLATSEEAYAA  132 (244)
Q Consensus        91 ~~~~~~A~~~~~~---~~~~~lW~~LA~~Al~----~~~l~~A~~~y~~  132 (244)
                      .+++++|.+..+.   ......|..||.....    .++++.|...|.+
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~  103 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSK  103 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHH
Confidence            6666666655544   2455666666666666    6666666666553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=96.35  E-value=0.019  Score=42.51  Aligned_cols=80  Identities=13%  Similarity=-0.045  Sum_probs=60.5

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMY  159 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia  159 (244)
                      ..++..|++++|....+..     .....|..+|......++++.|+.+|.+.=         ++.. ..+.....|.++
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al---------~l~P~~~~~~~~la~~~   95 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR---------MLDPKDIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHH
Confidence            4568999999999988775     578999999999999999999999987531         1111 112234578888


Q ss_pred             HHcCCHHHHHHHHHH
Q psy11525        160 LLGGNISEAESILLQ  174 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~  174 (244)
                      ...|++++|...|.+
T Consensus        96 ~~~g~~~~A~~~~~~  110 (121)
T 1hxi_A           96 TNEHNANAALASLRA  110 (121)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHH
Confidence            888888888887765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.35  E-value=0.16  Score=41.18  Aligned_cols=140  Identities=13%  Similarity=0.075  Sum_probs=91.9

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .+...|++++|....+..     .....|..+|......++++.|..+|.+.-...     .............|.++..
T Consensus        12 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~~lg~~~~~   86 (272)
T 3u4t_A           12 FLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-----NATKAKSADFEYYGKILMK   86 (272)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-----CTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-----CchhHHHHHHHHHHHHHHH
Confidence            358899999999988774     345689999999999999999999998653211     0000011123578999999


Q ss_pred             cCCHHHHHHHHHHCCC-----H---HHHHHHHHHhcCHHHHHHHHHhc---CCchhHHHHHHH-HHHHHcCCcccHHHHH
Q psy11525        162 GGNISEAESILLQHGL-----I---FRAIQVSILTHNWDRALELALRH---KTHIDTVLYQRK-KYLDNLEKIETNEKFL  229 (244)
Q Consensus       162 ~G~~~eAe~~~l~~g~-----~---~~Ai~m~~~l~~W~~Al~LA~~~---~~~~~~vl~~r~-~yl~~~~~~e~~~~f~  229 (244)
                      .|++++|.+.|.++-.     +   ...-.+|..+++|++|++..++.   ++....++.... ..+......++.+.|.
T Consensus        87 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  166 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFV  166 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999887521     1   12245778889999998887653   233333333343 3333334455555555


Q ss_pred             hc
Q psy11525        230 RL  231 (244)
Q Consensus       230 ~~  231 (244)
                      ++
T Consensus       167 ~a  168 (272)
T 3u4t_A          167 KV  168 (272)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=96.31  E-value=0.064  Score=48.30  Aligned_cols=137  Identities=7%  Similarity=-0.035  Sum_probs=96.9

Q ss_pred             HHHcCCHHHHHHHHhcc----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcC
Q psy11525         88 YAASHSWPQALSLCRTL----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGG  163 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G  163 (244)
                      +...|++++|...++..    +....|..+|......++++.|..+|.+.-.        .-..........|.++...|
T Consensus       253 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~  324 (537)
T 3fp2_A          253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVD--------LNPEYPPTYYHRGQMYFILQ  324 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHTT
T ss_pred             HHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc--------cCCCCHHHHHHHHHHHHhcC
Confidence            47889999999988774    4478899999999999999999988876421        11111223456899999999


Q ss_pred             CHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525        164 NISEAESILLQHG-----LI---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       164 ~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~e~~~~f~~~  231 (244)
                      ++++|...|.++-     .+   ...-.++..+++|++|++..++   ..+....+.......+...|+ .++.+.|.++
T Consensus       325 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             CHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            9999999998751     11   1235678899999999887755   234334455556666666666 5666777765


Q ss_pred             c
Q psy11525        232 Q  232 (244)
Q Consensus       232 ~  232 (244)
                      .
T Consensus       405 ~  405 (537)
T 3fp2_A          405 K  405 (537)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=96.28  E-value=0.037  Score=51.47  Aligned_cols=79  Identities=9%  Similarity=-0.100  Sum_probs=42.8

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcC
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGG  163 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G  163 (244)
                      ...|++++|.+..+..     .....|..+|......++++.|..+|.+.-..        -....+.....|.++...|
T Consensus        34 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g  105 (568)
T 2vsy_A           34 LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA--------APEHPGIALWLGHALEDAG  105 (568)
T ss_dssp             HHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcC
Confidence            5566666666665553     34556666666666666666666665542110        0001112234566666666


Q ss_pred             CHHHHHHHHHHC
Q psy11525        164 NISEAESILLQH  175 (244)
Q Consensus       164 ~~~eAe~~~l~~  175 (244)
                      ++++|.+.|.++
T Consensus       106 ~~~~A~~~~~~a  117 (568)
T 2vsy_A          106 QAEAAAAAYTRA  117 (568)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            666666666553

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=96.28  E-value=0.091  Score=45.83  Aligned_cols=140  Identities=7%  Similarity=0.054  Sum_probs=93.3

Q ss_pred             HHHcCCHHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc---HHH
Q psy11525         88 YAASHSWPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---KAA  153 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---~~~  153 (244)
                      |...|++++|.......       ..    ...|..+|......++++.|..+|.+.-     ...+.....+.   ...
T Consensus       194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI-----AVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCGGGHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHhhccchhHHHHHH
Confidence            47789999998877653       11    1478889999999999999999887632     22222222111   235


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHCCC-------HHH------HHHHHHHhcC---HHHHHHHHHhcCCc--hhHHHHHHHHH
Q psy11525        154 QQAEMYLLGGNISEAESILLQHGL-------IFR------AIQVSILTHN---WDRALELALRHKTH--IDTVLYQRKKY  215 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l~~g~-------~~~------Ai~m~~~l~~---W~~Al~LA~~~~~~--~~~vl~~r~~y  215 (244)
                      ..|.++...|++++|...|.++=.       +..      .-.+|...++   +++|+.+.++.+..  ...+...-...
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            689999999999999999876522       211      1234455566   89999999988643  45555555666


Q ss_pred             HHHcCC-cccHHHHHhcc
Q psy11525        216 LDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       216 l~~~~~-~e~~~~f~~~~  232 (244)
                      +...|+ .++.+.|+++.
T Consensus       349 y~~~g~~~~A~~~~~~al  366 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVE  366 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHH
Confidence            666666 56666666664

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.25  E-value=0.041  Score=44.57  Aligned_cols=135  Identities=12%  Similarity=-0.014  Sum_probs=84.2

Q ss_pred             HHHHHHHHhcc---C---CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc-----HHHHHHHHHHHc
Q psy11525         94 WPQALSLCRTL---N---DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV-----KAAQQAEMYLLG  162 (244)
Q Consensus        94 ~~~A~~~~~~~---~---~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~-----~~~~~A~ia~~~  162 (244)
                      +++|+++++..   .   ....|..+|......++++.|+.+|.+.-     ...++......     ....+|.++...
T Consensus        24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~   98 (283)
T 3edt_B           24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL-----AIREKTLGKDHPAVAATLNNLAVLYGKR   98 (283)
T ss_dssp             HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-----HHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence            34555555442   2   35678899999999999999999998642     22333311111     234679999999


Q ss_pred             CCHHHHHHHHHHCCCH----------HHH------HHHHHHhcCHHHHHHHHHhc-----------CCchhHHHHHHHHH
Q psy11525        163 GNISEAESILLQHGLI----------FRA------IQVSILTHNWDRALELALRH-----------KTHIDTVLYQRKKY  215 (244)
Q Consensus       163 G~~~eAe~~~l~~g~~----------~~A------i~m~~~l~~W~~Al~LA~~~-----------~~~~~~vl~~r~~y  215 (244)
                      |++++|.+.|.++-..          ..+      -..|..+++|++|++..++-           .+..-.++......
T Consensus        99 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  178 (283)
T 3edt_B           99 GKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC  178 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            9999999999876332          222      34677889999887766542           11122333333444


Q ss_pred             HHHcCC-cccHHHHHhccc
Q psy11525        216 LDNLEK-IETNEKFLRLQS  233 (244)
Q Consensus       216 l~~~~~-~e~~~~f~~~~~  233 (244)
                      +...|+ .++.+.|.++.+
T Consensus       179 ~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          179 YLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            444455 677777776643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=96.22  E-value=0.046  Score=38.74  Aligned_cols=78  Identities=6%  Similarity=-0.055  Sum_probs=49.9

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +...|++++|.......     .....|..+|......++++.|..+|.+.-..        -..........|.++...
T Consensus        22 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~   93 (131)
T 2vyi_A           22 QMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--------DPAYSKAYGRMGLALSSL   93 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred             HHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--------CccCHHHHHHHHHHHHHh
Confidence            47788888888877653     45678888888888888888888877653211        001111224456666666


Q ss_pred             CCHHHHHHHHH
Q psy11525        163 GNISEAESILL  173 (244)
Q Consensus       163 G~~~eAe~~~l  173 (244)
                      |++++|...|.
T Consensus        94 ~~~~~A~~~~~  104 (131)
T 2vyi_A           94 NKHVEAVAYYK  104 (131)
T ss_dssp             TCHHHHHHHHH
T ss_pred             CCHHHHHHHHH
Confidence            66666665554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.21  E-value=0.054  Score=37.65  Aligned_cols=79  Identities=10%  Similarity=0.026  Sum_probs=45.6

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +...|+|++|.+.....     .....|..+|......++++.|..+|.+.-..        -..........|.++...
T Consensus        14 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A           14 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--------KPDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHH
Confidence            46777777777766653     35667777777777777777777666543211        000111123455666666


Q ss_pred             CCHHHHHHHHHH
Q psy11525        163 GNISEAESILLQ  174 (244)
Q Consensus       163 G~~~eAe~~~l~  174 (244)
                      |++++|.+.|.+
T Consensus        86 ~~~~~A~~~~~~   97 (118)
T 1elw_A           86 NRFEEAKRTYEE   97 (118)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            666666655543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=96.18  E-value=0.28  Score=41.21  Aligned_cols=141  Identities=13%  Similarity=0.125  Sum_probs=91.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhcc-C----CH-----HHHHH-HHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc--
Q psy11525         84 VLHSYAASHSWPQALSLCRTL-N----DD-----ILWAC-LAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV--  150 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~-~----~~-----~lW~~-LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~--  150 (244)
                      .+..++..|++++|..++... .    .+     ..|.. +|......++++.|...|.+.=        .......+  
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al--------~~~~~~~~~~  152 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLL--------NQQLTGIDVY  152 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH--------HTCCCCSCTT
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHH--------HHhcccccHH
Confidence            355678999999999998774 1    11     23554 7777777778888888776531        11111222  


Q ss_pred             ----HHHHHHHHHHHcCCHHHHHHHHHHCC--------CHHHH-------HHHHHHhcCHHHHHHHH-------HhcCCc
Q psy11525        151 ----KAAQQAEMYLLGGNISEAESILLQHG--------LIFRA-------IQVSILTHNWDRALELA-------LRHKTH  204 (244)
Q Consensus       151 ----~~~~~A~ia~~~G~~~eAe~~~l~~g--------~~~~A-------i~m~~~l~~W~~Al~LA-------~~~~~~  204 (244)
                          -....|.++...|++++|...|.++=        .....       -..|..++++++|++..       ...+..
T Consensus       153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~  232 (293)
T 3u3w_A          153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM  232 (293)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence                13457889999999999999887752        22111       23567788888876654       344322


Q ss_pred             --hhHHHHHHHHHHHHcC-C-cccHHHHHhcc
Q psy11525        205 --IDTVLYQRKKYLDNLE-K-IETNEKFLRLQ  232 (244)
Q Consensus       205 --~~~vl~~r~~yl~~~~-~-~e~~~~f~~~~  232 (244)
                        +..++......+...| . .++.+.|+++-
T Consensus       233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence              4566666666667788 4 67777777763

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.049  Score=48.56  Aligned_cols=79  Identities=11%  Similarity=-0.067  Sum_probs=45.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCC--------------CHHHHHHHHHH---hcCHHHHHHHHHh---cCCchhHHHHHH
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHG--------------LIFRAIQVSIL---THNWDRALELALR---HKTHIDTVLYQR  212 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g--------------~~~~Ai~m~~~---l~~W~~Al~LA~~---~~~~~~~vl~~r  212 (244)
                      ...|.++...|++++|...|.++-              -....-..+..   .+++++|++..++   ..+.........
T Consensus       376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  455 (514)
T 2gw1_A          376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL  455 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            456778888888888888776541              11222345556   7888888766544   233323333444


Q ss_pred             HHHHHHcCC-cccHHHHHhc
Q psy11525        213 KKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       213 ~~yl~~~~~-~e~~~~f~~~  231 (244)
                      ...+...|+ .++.+.|+++
T Consensus       456 a~~~~~~g~~~~A~~~~~~a  475 (514)
T 2gw1_A          456 AQMKLQQEDIDEAITLFEES  475 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHH
Confidence            444444444 5566666655

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.16  E-value=0.13  Score=47.76  Aligned_cols=115  Identities=12%  Similarity=0.147  Sum_probs=82.3

Q ss_pred             HHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHH-----------------HHHHHhCChhHH-HHHHHhhCCC
Q psy11525         88 YAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSE-----------------EAYAAIEQVDKV-MYINHIKGIP  149 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~-----------------~~y~~l~d~~~v-~~l~~i~~~~  149 (244)
                      +...|+|++|++.++...+...|..+...|+..++++.|.                 .+|.+.|.+.-+ .+++....++
T Consensus       158 L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le  237 (449)
T 1b89_A          158 LVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE  237 (449)
T ss_dssp             HHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred             HHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence            4889999999999999999999999999999999999988                 456777776666 7777776665


Q ss_pred             cHHH----HHHHHHH--HcCCHHHHHHHH-------------HHCCCHHHHHHHHHHhcCHHHHHHHHHhcC
Q psy11525        150 VKAA----QQAEMYL--LGGNISEAESIL-------------LQHGLIFRAIQVSILTHNWDRALELALRHK  202 (244)
Q Consensus       150 ~~~~----~~A~ia~--~~G~~~eAe~~~-------------l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~  202 (244)
                      ..+.    ..|.+..  .-|+..|+-++|             .+.-.|.+++-+|..-+.||.|....-.|.
T Consensus       238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~  309 (449)
T 1b89_A          238 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP  309 (449)
T ss_dssp             TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC
Confidence            4221    1122222  112344444444             344566677888888888888888887775

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=96.15  E-value=0.053  Score=38.05  Aligned_cols=46  Identities=17%  Similarity=0.252  Sum_probs=31.3

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      +...|++++|.+.....     .....|..+|......++++.|...|.+.
T Consensus        19 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~   69 (125)
T 1na0_A           19 YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            46777777777766553     34566777777777777777777666553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.14  E-value=0.032  Score=40.76  Aligned_cols=80  Identities=10%  Similarity=-0.054  Sum_probs=57.4

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .+...|+|++|.......     .....|..+|......++++.|..+|.+.-...        ..........|.++..
T Consensus        18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~   89 (137)
T 3q49_B           18 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAHFFLGQCQLE   89 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHH
T ss_pred             HHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHH
Confidence            458899999999887663     467899999999999999999988876532110        1111223567888888


Q ss_pred             cCCHHHHHHHHHH
Q psy11525        162 GGNISEAESILLQ  174 (244)
Q Consensus       162 ~G~~~eAe~~~l~  174 (244)
                      .|++++|...|.+
T Consensus        90 ~~~~~~A~~~~~~  102 (137)
T 3q49_B           90 MESYDEAIANLQR  102 (137)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHH
Confidence            8888887776644

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=96.14  E-value=0.091  Score=42.43  Aligned_cols=108  Identities=13%  Similarity=-0.010  Sum_probs=78.2

Q ss_pred             HHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc----
Q psy11525         88 YAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV----  150 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~----  150 (244)
                      |...|++++|.......             .....|..+|......++++.|..+|.+.-     ...++.....+    
T Consensus        53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~  127 (283)
T 3edt_B           53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-----EIREKVLGKFHPDVA  127 (283)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-----HHHHHHcCCCChHHH
Confidence            48899999998877653             124578899999999999999999998742     23333322221    


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHCCC----------HHHH------HHHHHHhcCHHHHHHHHHh
Q psy11525        151 -KAAQQAEMYLLGGNISEAESILLQHGL----------IFRA------IQVSILTHNWDRALELALR  200 (244)
Q Consensus       151 -~~~~~A~ia~~~G~~~eAe~~~l~~g~----------~~~A------i~m~~~l~~W~~Al~LA~~  200 (244)
                       ....+|.++...|++++|...|.++-.          +..+      -..|...++|++|++..++
T Consensus       128 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  194 (283)
T 3edt_B          128 KQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE  194 (283)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence             224588999999999999999877632          2222      3567889999999877654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=96.13  E-value=0.019  Score=52.72  Aligned_cols=45  Identities=13%  Similarity=0.213  Sum_probs=38.4

Q ss_pred             HHcCCH-HHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         89 AASHSW-PQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        89 l~~~~~-~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      ...|++ ++|.+..+..     .....|..||......++++.|+.+|.+.
T Consensus       113 ~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A          113 NVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             TSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            677899 9999888764     45789999999999999999999998764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=96.09  E-value=0.067  Score=42.90  Aligned_cols=105  Identities=11%  Similarity=-0.004  Sum_probs=76.4

Q ss_pred             HHHHcCCHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMY  159 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia  159 (244)
                      .++..|+|++|.......      .....|..+|......++++.|..+|.+.-         ++.. ........|.++
T Consensus        16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al---------~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A           16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAI---------KKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HTTCSHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHH---------HhCcchHHHHHHHHHHH
Confidence            358999999999987653      456788889999999999999988876532         1111 011235689999


Q ss_pred             HHcCCHHHHHHHHHHC-----CCH----------HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        160 LLGGNISEAESILLQH-----GLI----------FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~~-----g~~----------~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ...|++++|.+.|.++     +.+          ...=..+..++++++|++.-++
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  142 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKH  142 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHH
Confidence            9999999999998765     222          1123567788999999887765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.07  E-value=0.18  Score=36.77  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=53.1

Q ss_pred             HHHcCCHHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHH
Q psy11525         88 YAASHSWPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAA  153 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~  153 (244)
                      |...|++++|....+..       ..    ...|..+|......++++.|...|.+.-     ..........   ....
T Consensus        19 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~   93 (164)
T 3ro3_A           19 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL-----LLARQLKDRAVEAQSCY   93 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHhCCcHHHHHHHH
Confidence            47889999998887664       11    1378889999999999999988887642     2222221110   1123


Q ss_pred             HHHHHHHHcCCHHHHHHHHH
Q psy11525        154 QQAEMYLLGGNISEAESILL  173 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l  173 (244)
                      ..|.++...|++++|...|.
T Consensus        94 ~l~~~~~~~~~~~~A~~~~~  113 (164)
T 3ro3_A           94 SLGNTYTLLQDYEKAIDYHL  113 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHH
Confidence            46777777777777777663

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.04  E-value=0.043  Score=42.63  Aligned_cols=136  Identities=12%  Similarity=0.111  Sum_probs=81.9

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc------HHHHHHH
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV------KAAQQAE  157 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~------~~~~~A~  157 (244)
                      +..|++++|.+.++.+     .....|..+|......++++.|...|.+.-        .......+      -....|.
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------~~~~~~~~~~~~~~~~~~l~~   74 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ--------QQAQKSGDHTAEHRALHQVGM   74 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHTTCCHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH--------HHHHHcCCcHHHHHHHHHHHH
Confidence            5689999999943332     346788999999999999999998887632        21222222      1245788


Q ss_pred             HHHHcCCHHHHHHHHHHC-------C-CH-HHH------HHHHHHhcCHHHHHHHHHh-------cCCc--hhHHHHHHH
Q psy11525        158 MYLLGGNISEAESILLQH-------G-LI-FRA------IQVSILTHNWDRALELALR-------HKTH--IDTVLYQRK  213 (244)
Q Consensus       158 ia~~~G~~~eAe~~~l~~-------g-~~-~~A------i~m~~~l~~W~~Al~LA~~-------~~~~--~~~vl~~r~  213 (244)
                      ++...|++++|...|.++       | .+ ..+      -.++..++++++|++..++       .+..  .-..+....
T Consensus        75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  154 (203)
T 3gw4_A           75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG  154 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            999999999998888764       3 32 111      3467778899888665543       2221  112222333


Q ss_pred             HHHHHcCC-cccHHHHHhcc
Q psy11525        214 KYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       214 ~yl~~~~~-~e~~~~f~~~~  232 (244)
                      ..+...|+ .++...|+++.
T Consensus       155 ~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          155 DLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHH
Confidence            33344555 55666666553

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=96.02  E-value=0.094  Score=40.64  Aligned_cols=107  Identities=12%  Similarity=0.074  Sum_probs=70.8

Q ss_pred             HHHcCCHHHHHHHHhcc-C----------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC----cHH
Q psy11525         88 YAASHSWPQALSLCRTL-N----------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP----VKA  152 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-~----------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~----~~~  152 (244)
                      +...|++++|....+.. .          ....|..+|......++++.|...|.+.-     ...+.....+    .-.
T Consensus        36 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~  110 (203)
T 3gw4_A           36 YAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEER-----ELLASLPEDPLAASANA  110 (203)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHSCCCHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHcCccHHHHHHHH
Confidence            47789999888877653 1          24568889999999999999998887632     2222211111    012


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHC-------CCHH-------HHHHHHHHhcCHHHHHHHHH
Q psy11525        153 AQQAEMYLLGGNISEAESILLQH-------GLIF-------RAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~-------g~~~-------~Ai~m~~~l~~W~~Al~LA~  199 (244)
                      ...|.++...|++++|...|.++       +.+.       ..-..+..+|+|++|++..+
T Consensus       111 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  171 (203)
T 3gw4_A          111 YEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL  171 (203)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            45789999999999999888664       3332       12345667778877765443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.98  E-value=0.043  Score=39.31  Aligned_cols=80  Identities=13%  Similarity=0.056  Sum_probs=55.1

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .+...|+|++|.......     .....|..+|......++++.|..+|.+.-..        -..........|.++..
T Consensus        25 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           25 ECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--------EPTFIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHH
Confidence            358899999999888763     46788999999999999999888887653211        00111223456777777


Q ss_pred             cCCHHHHHHHHHH
Q psy11525        162 GGNISEAESILLQ  174 (244)
Q Consensus       162 ~G~~~eAe~~~l~  174 (244)
                      .|++++|.+.|.+
T Consensus        97 ~~~~~~A~~~~~~  109 (133)
T 2lni_A           97 MKDYTKAMDVYQK  109 (133)
T ss_dssp             TTCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHH
Confidence            7777777766653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=95.93  E-value=0.03  Score=54.91  Aligned_cols=103  Identities=13%  Similarity=0.069  Sum_probs=77.2

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLL  161 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~  161 (244)
                      |...|++++|....+..     +....|..||......++++.|+.+|.+.=         ++.. ..+-...+|.++..
T Consensus        53 l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl---------~l~P~~~~a~~~Lg~~~~~  123 (723)
T 4gyw_A           53 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI---------QINPAFADAHSNLASIHKD  123 (723)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHH
Confidence            48899999999988764     568899999999999999999999997531         1111 12233568999999


Q ss_pred             cCCHHHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHH
Q psy11525        162 GGNISEAESILLQH-----GLIF---RAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       162 ~G~~~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~  199 (244)
                      +|++++|.+.|.++     +.++   .--.++..+++|++|.+.-+
T Consensus       124 ~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~  169 (723)
T 4gyw_A          124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK  169 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence            99999999999875     2222   12456788899988876443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=95.92  E-value=0.21  Score=42.75  Aligned_cols=84  Identities=17%  Similarity=0.110  Sum_probs=56.1

Q ss_pred             HHHHcCCHHHHHHHHhcc----C-C----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL----N-D----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQ  154 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~----~-~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~  154 (244)
                      .+...|++++|....+..    . .    ...|..+|......++++.|..+|.+.-     ...+.+...+   .....
T Consensus        18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~   92 (406)
T 3sf4_A           18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-----TLARTIGDQLGEAKASGN   92 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHhccccHHHHHHHHH
Confidence            358899999999988764    2 2    3578899999999999999998887632     1112111110   11234


Q ss_pred             HHHHHHHcCCHHHHHHHHHHC
Q psy11525        155 QAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      .|.++...|++++|...|.++
T Consensus        93 la~~~~~~g~~~~A~~~~~~a  113 (406)
T 3sf4_A           93 LGNTLKVLGNFDEAIVCCQRH  113 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH
Confidence            677777777777777766544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=95.89  E-value=0.049  Score=47.42  Aligned_cols=133  Identities=8%  Similarity=-0.010  Sum_probs=83.2

Q ss_pred             HHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHHHHHHHHH
Q psy11525         94 WPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---PVKAAQQAEMY  159 (244)
Q Consensus        94 ~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~~~~A~ia  159 (244)
                      +++|.+..+..       .    ....|..+|......++++.|..+|.+.-.     ........   ......+|.++
T Consensus       199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~la~~~  273 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR-----IAREFGDRAAERRANSNLGNSH  273 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----HHHhcCCcHHHHHHHHHHHHHH
Confidence            88887766553       1    234888999999999999999999876422     12221110   01235678999


Q ss_pred             HHcCCHHHHHHHHHHCCCHH--------------HHHHHHHHhcCHHHHHHHHHh-------cCCc--hhHHHHHHHHHH
Q psy11525        160 LLGGNISEAESILLQHGLIF--------------RAIQVSILTHNWDRALELALR-------HKTH--IDTVLYQRKKYL  216 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~~g~~~--------------~Ai~m~~~l~~W~~Al~LA~~-------~~~~--~~~vl~~r~~yl  216 (244)
                      ...|++++|...|.++-...              ..-.+|...+++++|++..++       .+..  ....+......+
T Consensus       274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  353 (411)
T 4a1s_A          274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH  353 (411)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence            99999999998887652221              123467788888888766554       2211  223444445555


Q ss_pred             HHcCC-cccHHHHHhc
Q psy11525        217 DNLEK-IETNEKFLRL  231 (244)
Q Consensus       217 ~~~~~-~e~~~~f~~~  231 (244)
                      ...|+ .++.+.|+++
T Consensus       354 ~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          354 SAIGGHERALKYAEQH  369 (411)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHH
Confidence            66666 4666666665

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.83  E-value=0.15  Score=42.01  Aligned_cols=84  Identities=17%  Similarity=0.114  Sum_probs=58.1

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQ  154 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~  154 (244)
                      .+...|++++|....+..     .+    ...|..+|......++++.|...|.+.-+     ..+.....+   .....
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A           14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT-----LARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHHTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HhhcccccHHHHHHHHH
Confidence            358899999999988774     22    36788999999999999999988876322     122221111   11245


Q ss_pred             HHHHHHHcCCHHHHHHHHHHC
Q psy11525        155 QAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      .|.++...|++++|...|.++
T Consensus        89 l~~~~~~~g~~~~A~~~~~~a  109 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRH  109 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHH
Confidence            678888888888888877664

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.83  E-value=0.036  Score=44.94  Aligned_cols=100  Identities=17%  Similarity=0.064  Sum_probs=64.9

Q ss_pred             CCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHH
Q psy11525         92 HSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNIS  166 (244)
Q Consensus        92 ~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~  166 (244)
                      |++++|....+..     .....|..+|......++++.|+.+|.+.-..         ...++.....|.++...|+++
T Consensus        98 g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------~~~~~~~~~la~~~~~~g~~~  168 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL---------EDTPEIRSALAELYLSMGRLD  168 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHTCHH
T ss_pred             cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---------ccchHHHHHHHHHHHHcCCHH
Confidence            9999999888764     46789999999999999999999999864211         122223356899999999999


Q ss_pred             HHHHHHHHC-----CCHHH---HHHHHHHhcCHHHHHHHHHh
Q psy11525        167 EAESILLQH-----GLIFR---AIQVSILTHNWDRALELALR  200 (244)
Q Consensus       167 eAe~~~l~~-----g~~~~---Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      +|...|.++     +.+..   --.++..+|++++|++..++
T Consensus       169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~  210 (217)
T 2pl2_A          169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAAL  210 (217)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------------
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999875     22221   13456777888888876654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=95.82  E-value=0.17  Score=44.66  Aligned_cols=106  Identities=8%  Similarity=-0.007  Sum_probs=71.9

Q ss_pred             HHHcCCHHHHHHHHhcc-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhH--HHHHHHhhCCCcHHHHH--H
Q psy11525         88 YAASHSWPQALSLCRTL-------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDK--VMYINHIKGIPVKAAQQ--A  156 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~--v~~l~~i~~~~~~~~~~--A  156 (244)
                      +...|++++|++.+..+       .+-.....++...+..++++.|++.+.++.+.+-  ++.=      .+.....  |
T Consensus       110 ~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~------d~~l~~Laea  183 (310)
T 3mv2_B          110 QAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD------NEMILNLAES  183 (310)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH------HHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc------hHHHHHHHHH
Confidence            35679999999999987       6778889999999999999999988876432221  0000      0111222  4


Q ss_pred             HHHHHcC--CHHHHHHHHHHC----CC---HHHHHHHHHHhcCHHHHHHHHH
Q psy11525        157 EMYLLGG--NISEAESILLQH----GL---IFRAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       157 ~ia~~~G--~~~eAe~~~l~~----g~---~~~Ai~m~~~l~~W~~Al~LA~  199 (244)
                      -+.+..|  ++++|..+|-+.    +.   +...+..+..+|+|++|.+..+
T Consensus       184 ~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          184 YIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence            3456666  788886666543    33   3455668889999999987754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.77  E-value=0.047  Score=37.70  Aligned_cols=81  Identities=14%  Similarity=0.109  Sum_probs=53.4

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC--CCcHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG--IPVKAAQQAEMY  159 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~--~~~~~~~~A~ia  159 (244)
                      -+...|++++|....+..     .....|..+|......++++.|..+|.+.-..        -..  ........|.++
T Consensus        15 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A           15 LQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--------IEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------SCCTTCHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CcccchHHHHHHHHHHH
Confidence            357788888888877653     45678888888888888888888877653211        001  111224567777


Q ss_pred             HHc-CCHHHHHHHHHHC
Q psy11525        160 LLG-GNISEAESILLQH  175 (244)
Q Consensus       160 ~~~-G~~~eAe~~~l~~  175 (244)
                      ... |++++|.+.|.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             TTCSSCSHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHH
Confidence            777 7777777776553

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=95.75  E-value=0.24  Score=42.94  Aligned_cols=83  Identities=10%  Similarity=0.069  Sum_probs=56.9

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCH----HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDD----ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQQ  155 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~----~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~~  155 (244)
                      +...|++++|....+..     .+.    ..|..+|......++++.|..+|.+.-     ...+.+...+   .....+
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL-----TLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHccCchHHHHHHHHH
Confidence            58999999999988774     222    579999999999999999999887632     1222221110   112346


Q ss_pred             HHHHHHcCCHHHHHHHHHHC
Q psy11525        156 AEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       156 A~ia~~~G~~~eAe~~~l~~  175 (244)
                      |.++...|++++|...|.++
T Consensus       133 ~~~~~~~g~~~~A~~~~~~a  152 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERH  152 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH
Confidence            77777777777777776654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.70  E-value=0.11  Score=37.23  Aligned_cols=80  Identities=13%  Similarity=0.035  Sum_probs=52.5

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CCH---HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL-----NDD---ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---PVKAAQ  154 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~~---~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~~~  154 (244)
                      ..++..|+|++|.......     .+.   ..|..+|......++++.|..+|.+.-+        .--..   ++....
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~--------~~p~~~~~~~~~~~   81 (129)
T 2xev_A           10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS--------RYPTHDKAAGGLLK   81 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTSTTHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--------HCCCCcccHHHHHH
Confidence            3467889999998877764     223   5888888888888888888888775321        11111   111244


Q ss_pred             HHHHHHHcCCHHHHHHHHH
Q psy11525        155 QAEMYLLGGNISEAESILL  173 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l  173 (244)
                      .|.++...|++++|...|.
T Consensus        82 la~~~~~~g~~~~A~~~~~  100 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQ  100 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            6777777777777766664

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=95.66  E-value=0.13  Score=36.27  Aligned_cols=83  Identities=11%  Similarity=0.017  Sum_probs=56.5

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC----CcHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI----PVKAAQQAE  157 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~----~~~~~~~A~  157 (244)
                      .+...|+|++|.......     .....|..+|......++++.|..+|.+.-+..     ......    .......|.
T Consensus        13 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~la~   87 (131)
T 1elr_A           13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-----RENREDYRQIAKAYARIGN   87 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-----cccchhHHHHHHHHHHHHH
Confidence            458899999999988764     467889999999999999999998887643211     000000    112234666


Q ss_pred             HHHHcCCHHHHHHHHHH
Q psy11525        158 MYLLGGNISEAESILLQ  174 (244)
Q Consensus       158 ia~~~G~~~eAe~~~l~  174 (244)
                      ++...|++++|.+.|.+
T Consensus        88 ~~~~~~~~~~A~~~~~~  104 (131)
T 1elr_A           88 SYFKEEKYKDAIHFYNK  104 (131)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHH
Confidence            77777777777666543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.64  E-value=0.25  Score=42.96  Aligned_cols=136  Identities=10%  Similarity=-0.006  Sum_probs=81.3

Q ss_pred             HHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc------
Q psy11525         88 YAASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV------  150 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~------  150 (244)
                      +...|++++|....+..       .    ....|..+|......++++.|...|.+.        ++-..+..+      
T Consensus       113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a--------l~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA--------YEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------HHHHHTCSTTHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHHHHhCccchHHHH
Confidence            37889999999887763       1    2367889999999999999988887652        222222222      


Q ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHCCCH-------H-------HHHHHHHHhcCHHHHHHHHHh-------cC--Cchh
Q psy11525        151 -KAAQQAEMYLLGGNISEAESILLQHGLI-------F-------RAIQVSILTHNWDRALELALR-------HK--THID  206 (244)
Q Consensus       151 -~~~~~A~ia~~~G~~~eAe~~~l~~g~~-------~-------~Ai~m~~~l~~W~~Al~LA~~-------~~--~~~~  206 (244)
                       .....|.++...|++++|...|.++=..       .       .-=.+|..++++++|++..++       .+  +..-
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence             1234678888888888888877664211       1       112345667777766554332       22  2222


Q ss_pred             HHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525        207 TVLYQRKKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       207 ~vl~~r~~yl~~~~~-~e~~~~f~~~  231 (244)
                      ..+.....-+...|+ .++.+.|.++
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~a  290 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKG  290 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            333333333344444 5566666555

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=95.63  E-value=0.17  Score=40.99  Aligned_cols=102  Identities=9%  Similarity=-0.099  Sum_probs=72.3

Q ss_pred             cCCHHHHHHHHhcc-C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         91 SHSWPQALSLCRTL-N--------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        91 ~~~~~~A~~~~~~~-~--------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .|++++|....+.. .        ....|..+|......++++.|..+|.+.-..        -..........|.++..
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~   89 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQ   89 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHH
Confidence            46777777766653 2        3578999999999999999999998763211        01111233568999999


Q ss_pred             cCCHHHHHHHHHHCC-----CHH---HHHHHHHHhcCHHHHHHHHHh
Q psy11525        162 GGNISEAESILLQHG-----LIF---RAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       162 ~G~~~eAe~~~l~~g-----~~~---~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      .|++++|.+.|.++=     .+.   .--.+|..++++++|++..++
T Consensus        90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  136 (275)
T 1xnf_A           90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  136 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            999999999998652     111   124678889999999887655

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=95.58  E-value=0.084  Score=43.42  Aligned_cols=139  Identities=12%  Similarity=0.050  Sum_probs=92.6

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CC---HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL-----ND---DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQ  154 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~---~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~  154 (244)
                      ..++..|+|++|....+..     .+   ...|..+|......++++.|...|.+.-.        .--..+   +....
T Consensus        23 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--------~~p~~~~~~~a~~~   94 (261)
T 3qky_A           23 MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--------IYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCTTHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--------HCCCCchhHHHHHH
Confidence            3468999999999998875     23   78899999999999999999998876421        110011   12245


Q ss_pred             HHHHHHH--------cCCHHHHHHHHHHC-------CCHHHH------------------HHHHHHhcCHHHHHHHHHhc
Q psy11525        155 QAEMYLL--------GGNISEAESILLQH-------GLIFRA------------------IQVSILTHNWDRALELALRH  201 (244)
Q Consensus       155 ~A~ia~~--------~G~~~eAe~~~l~~-------g~~~~A------------------i~m~~~l~~W~~Al~LA~~~  201 (244)
                      .|.+...        .|++++|...|.+.       .....|                  -.+|...++|++|+..-++.
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  174 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV  174 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            6888888        99999999998764       122222                  45688899999998876542


Q ss_pred             ---CCc---hhHHHHHHHHHHHHcCCcc----cHHHHHhcc
Q psy11525        202 ---KTH---IDTVLYQRKKYLDNLEKIE----TNEKFLRLQ  232 (244)
Q Consensus       202 ---~~~---~~~vl~~r~~yl~~~~~~e----~~~~f~~~~  232 (244)
                         .+.   ....+.....-+...|...    ....|.++.
T Consensus       175 l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~  215 (261)
T 3qky_A          175 FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAV  215 (261)
T ss_dssp             HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHH
T ss_pred             HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHH
Confidence               222   3445555555445554433    235666554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=95.56  E-value=0.1  Score=36.75  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=55.7

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +...|++++|....+..     .....|..+|......++++.|...|.+.-..        ...........|.++...
T Consensus        45 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~  116 (136)
T 2fo7_A           45 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQ  116 (136)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTT
T ss_pred             HHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHH
Confidence            57889999999988764     45778999999999999999998888653211        111111224567777777


Q ss_pred             CCHHHHHHHHHH
Q psy11525        163 GNISEAESILLQ  174 (244)
Q Consensus       163 G~~~eAe~~~l~  174 (244)
                      |++++|...|.+
T Consensus       117 ~~~~~A~~~~~~  128 (136)
T 2fo7_A          117 GDYDEAIEYYQK  128 (136)
T ss_dssp             TCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHH
Confidence            777777777654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=95.53  E-value=0.032  Score=51.25  Aligned_cols=105  Identities=13%  Similarity=-0.071  Sum_probs=69.7

Q ss_pred             HHHcCCHHHHHHHHhcc----CCHHHHHHHHHHHHHc---------CCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHH
Q psy11525         88 YAASHSWPQALSLCRTL----NDDILWACLAGMATYS---------RDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQ  154 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~----~~~~lW~~LA~~Al~~---------~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~  154 (244)
                      |...|++++|.+..+..    +....|..+|......         ++++.|+.+|.+.=..        --........
T Consensus       147 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~  218 (474)
T 4abn_A          147 YWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYI  218 (474)
T ss_dssp             HHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHH
Confidence            48899999999988764    4578999999999888         8899888888763211        0011112245


Q ss_pred             HHHHHHHc--------CCHHHHHHHHHHCCC--H------H---HHHHHHHHhcCHHHHHHHHHh
Q psy11525        155 QAEMYLLG--------GNISEAESILLQHGL--I------F---RAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       155 ~A~ia~~~--------G~~~eAe~~~l~~g~--~------~---~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      .|.++...        |++++|...|.++-.  |      .   ..-..|..++++++|++..++
T Consensus       219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  283 (474)
T 4abn_A          219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ  283 (474)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            66677666        778888877766522  1      1   123456677788877665443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=95.51  E-value=0.1  Score=46.93  Aligned_cols=135  Identities=13%  Similarity=0.015  Sum_probs=89.4

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCC-HHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSRD-LATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~-l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      ...|++++|....+..     .....|..+|......++ ++.|..+|.+.=        +.--+...-...+|.++..+
T Consensus       108 ~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al--------~l~P~~~~a~~~~g~~~~~~  179 (382)
T 2h6f_A          108 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII--------EEQPKNYQVWHHRRVLVEWL  179 (382)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHH
T ss_pred             HHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHc
Confidence            7789999999988774     578999999999999996 999998887531        11001111234578888888


Q ss_pred             CCHHHHHHHHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHH-cCC-ccc-----
Q psy11525        163 GNISEAESILLQHG-----LI---FRAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDN-LEK-IET-----  224 (244)
Q Consensus       163 G~~~eAe~~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~-~~~-~e~-----  224 (244)
                      |++++|...|.++=     .+   ..--.++..+++|++|++..++   .++.-......|..-+.. .|. .++     
T Consensus       180 g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~e  259 (382)
T 2h6f_A          180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLERE  259 (382)
T ss_dssp             TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence            99999988887651     11   1112356678888888765544   344444555566665655 565 444     


Q ss_pred             HHHHHhc
Q psy11525        225 NEKFLRL  231 (244)
Q Consensus       225 ~~~f~~~  231 (244)
                      .+.|+++
T Consensus       260 l~~~~~A  266 (382)
T 2h6f_A          260 VQYTLEM  266 (382)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            2555554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.51  E-value=0.1  Score=38.12  Aligned_cols=81  Identities=12%  Similarity=0.010  Sum_probs=55.4

Q ss_pred             HHHHHcCCHHHHHHHHhcc----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL----ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAE  157 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~----~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~  157 (244)
                      ..+...|+|++|.+..+..    ..    ...|..+|......++++.|..+|.+.-..        -..........|.
T Consensus        36 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~  107 (148)
T 2dba_A           36 NELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------DGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TSCCHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--------CccCHHHHHHHHH
Confidence            3458899999999887764    23    678999999999999999888888653211        0111112345677


Q ss_pred             HHHHcCCHHHHHHHHHH
Q psy11525        158 MYLLGGNISEAESILLQ  174 (244)
Q Consensus       158 ia~~~G~~~eAe~~~l~  174 (244)
                      ++...|++++|.+.|.+
T Consensus       108 ~~~~~~~~~~A~~~~~~  124 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQR  124 (148)
T ss_dssp             HHHHHTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHH
Confidence            77777777777776643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.47  E-value=0.52  Score=39.73  Aligned_cols=112  Identities=8%  Similarity=-0.016  Sum_probs=71.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---C
Q psy11525         84 VLHSYAASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---P  149 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~  149 (244)
                      +..-|...|+|++|.......       .    ....|..+|......++++-|..+|.+.-..     ..+....   .
T Consensus        43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l-----~~~~g~~~~~a  117 (292)
T 1qqe_A           43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI-----FTHRGQFRRGA  117 (292)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHHcCCHHHHH
Confidence            334467899999998776542       1    1467889999999999999999888753211     1111000   0


Q ss_pred             cHHHHHHHHHHHc-CCHHHHHHHHHHCCCHH-------H-------HHHHHHHhcCHHHHHHHHHh
Q psy11525        150 VKAAQQAEMYLLG-GNISEAESILLQHGLIF-------R-------AIQVSILTHNWDRALELALR  200 (244)
Q Consensus       150 ~~~~~~A~ia~~~-G~~~eAe~~~l~~g~~~-------~-------Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ......|.++... |++++|...|.++-...       .       .-..+..++++++|++.-++
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            1123467777775 88888888776653321       1       13566777888888776554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=95.39  E-value=0.073  Score=42.73  Aligned_cols=82  Identities=16%  Similarity=0.053  Sum_probs=60.4

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHhCChhHHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL-----NDDILWAC----------------LAGMATYSRDLATSEEAYAAIEQVDKVMYINH  144 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~----------------LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~  144 (244)
                      ..++..|+|++|....+..     .....|..                +|......++++.|..+|.+.=        +.
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~   83 (208)
T 3urz_A           12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL--------QK   83 (208)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------HH
Confidence            3468999999999988774     23556777                8888888999998888886521        11


Q ss_pred             hhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        145 IKGIPVKAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       145 i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      --+..+.....|.++...|++++|...|.++
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  114 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKI  114 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            0111123356899999999999999999875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.22  E-value=0.25  Score=40.61  Aligned_cols=134  Identities=10%  Similarity=0.023  Sum_probs=81.7

Q ss_pred             HHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHHHHHHHHH
Q psy11525         94 WPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---PVKAAQQAEMY  159 (244)
Q Consensus        94 ~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~~~~A~ia  159 (244)
                      +++|.+.....       ..    ...|..+|......++++.|..+|.+.-+     ........   .......|.++
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL-----IAKEFGDKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HHHhcCChHHHHHHHHHHHHHH
Confidence            77776655442       22    34788899999999999999988876322     12221110   01235678899


Q ss_pred             HHcCCHHHHHHHHHHCC-------CHH-------HHHHHHHHhcCHHHHHHHHHh-------cCCc--hhHHHHHHHHHH
Q psy11525        160 LLGGNISEAESILLQHG-------LIF-------RAIQVSILTHNWDRALELALR-------HKTH--IDTVLYQRKKYL  216 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~~g-------~~~-------~Ai~m~~~l~~W~~Al~LA~~-------~~~~--~~~vl~~r~~yl  216 (244)
                      ...|++++|...|.++-       ...       ..-.++...+++++|++..++       .+..  ...++......+
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~  313 (338)
T 3ro2_A          234 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAY  313 (338)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            99999999998887642       211       123567788999988776544       2211  222344445555


Q ss_pred             HHcCC-cccHHHHHhcc
Q psy11525        217 DNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       217 ~~~~~-~e~~~~f~~~~  232 (244)
                      ...|+ .++...|+++.
T Consensus       314 ~~~g~~~~A~~~~~~a~  330 (338)
T 3ro2_A          314 TALGNHDQAMHFAEKHL  330 (338)
T ss_dssp             HHHTCHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHH
Confidence            55555 56666666653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=95.18  E-value=0.2  Score=46.52  Aligned_cols=133  Identities=16%  Similarity=0.016  Sum_probs=79.0

Q ss_pred             cCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCH
Q psy11525         91 SHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNI  165 (244)
Q Consensus        91 ~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~  165 (244)
                      .|++++|.+..+..     .....|..+|......++++.|+.+|.+.-..+-        ...+.....|.++...|++
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~   73 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--------GHPEAVARLGRVRWTQQRH   73 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--------TCHHHHHHHHHHHHHTTCH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHCCCH
Confidence            46777787777664     4578899999999999999999998876432210        1112235678999999999


Q ss_pred             HHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHc---CC-cccHHHHHh
Q psy11525        166 SEAESILLQH-----GLIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNL---EK-IETNEKFLR  230 (244)
Q Consensus       166 ~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~---~~-~e~~~~f~~  230 (244)
                      ++|.+.|.++     +.+.   ..-.+|..++++++|++..++   .++.-...+......+...   |+ .++.+.|++
T Consensus        74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~  153 (568)
T 2vsy_A           74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA  153 (568)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            9999998875     2222   123568889999999877655   3444334444445555555   55 455566665


Q ss_pred             c
Q psy11525        231 L  231 (244)
Q Consensus       231 ~  231 (244)
                      +
T Consensus       154 a  154 (568)
T 2vsy_A          154 A  154 (568)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=95.12  E-value=0.034  Score=51.41  Aligned_cols=104  Identities=9%  Similarity=-0.042  Sum_probs=71.5

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      +...|+|++|.+..+..     .....|..+|......++++.|+.+|.+.-..        --.........|.++..+
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--------~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--------DKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------CTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc
Confidence            35689999999888764     56899999999999999999999988763211        001112235679999999


Q ss_pred             CCHHHHHHHHHHC-----CCHH--HH---HHHHHHhcCHHHHHHHHH
Q psy11525        163 GNISEAESILLQH-----GLIF--RA---IQVSILTHNWDRALELAL  199 (244)
Q Consensus       163 G~~~eAe~~~l~~-----g~~~--~A---i~m~~~l~~W~~Al~LA~  199 (244)
                      |++++|.+.|.++     +...  ..   +..+...++|++|+++.+
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999875     1111  11   122667799999998877

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=95.10  E-value=0.54  Score=32.90  Aligned_cols=79  Identities=13%  Similarity=0.020  Sum_probs=53.2

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHH
Q psy11525        105 NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIFRAIQV  184 (244)
Q Consensus       105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m  184 (244)
                      .....|..+|......++++.|+.+|.+.=        +.--........+|.++...|++++|.+.|.+      |+++
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~------al~l   70 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELV--------ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ------GIEV   70 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH------HHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH------HHhh
Confidence            356789999999999999999999887642        11111223345678888889999888887754      4555


Q ss_pred             HHHhcCHHHHHHH
Q psy11525        185 SILTHNWDRALEL  197 (244)
Q Consensus       185 ~~~l~~W~~Al~L  197 (244)
                      ..+.++...+.++
T Consensus        71 ~~~~~~~~~~~~l   83 (100)
T 3ma5_A           71 AREEGTQKDLSEL   83 (100)
T ss_dssp             HHHHSCHHHHHHH
T ss_pred             hhcCCchhHHHHH
Confidence            5444444444433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=95.08  E-value=0.21  Score=39.19  Aligned_cols=80  Identities=11%  Similarity=0.002  Sum_probs=61.5

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC-------------
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP-------------  149 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~-------------  149 (244)
                      |...|++++|.......     .....|..+|......++++.|..+|.+.-.        ......             
T Consensus        47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~~  118 (213)
T 1hh8_A           47 YTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI--------QLRGNQLIDYKILGLQFKL  118 (213)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTTTCSEEECGGGTBCCEE
T ss_pred             HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHH--------hCCCccHHHHHHhccccCc
Confidence            58899999999988764     5678999999999999999999999876421        111111             


Q ss_pred             ---cHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        150 ---VKAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       150 ---~~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                         ......|.++...|++++|...|.++
T Consensus       119 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  147 (213)
T 1hh8_A          119 FACEVLYNIAFMYAKKEEWKKAEEQLALA  147 (213)
T ss_dssp             EHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence               22356788999999999999988764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=95.08  E-value=0.076  Score=40.83  Aligned_cols=101  Identities=17%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             HcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHH-HHHcC
Q psy11525         90 ASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEM-YLLGG  163 (244)
Q Consensus        90 ~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~i-a~~~G  163 (244)
                      ..|++++|...++..     .....|..+|......++++.|..+|.+.-..        --.........|.+ +...|
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~~~~   93 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAALATVLYYQAS   93 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHHHHHHHHHHTT
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhcC
Confidence            344455554444332     34566666666666666666666666542110        00111112334555 44556


Q ss_pred             CH--HHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHH
Q psy11525        164 NI--SEAESILLQH-----GLIF---RAIQVSILTHNWDRALELA  198 (244)
Q Consensus       164 ~~--~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA  198 (244)
                      ++  ++|...|.++     +.+.   ..-.+|..++++++|+...
T Consensus        94 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  138 (177)
T 2e2e_A           94 QHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELW  138 (177)
T ss_dssp             TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHH
Confidence            65  6666665543     1111   1123455566666665544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=95.06  E-value=0.16  Score=42.94  Aligned_cols=81  Identities=10%  Similarity=-0.057  Sum_probs=62.9

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .+...|+|++|.......     .....|..+|......++++.|+..|.+.-...-        .........|.++..
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A           13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--------QSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------TCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHH
Confidence            458899999999988764     5789999999999999999999988876433210        001123567999999


Q ss_pred             cCCHHHHHHHHHHC
Q psy11525        162 GGNISEAESILLQH  175 (244)
Q Consensus       162 ~G~~~eAe~~~l~~  175 (244)
                      .|++++|...|.++
T Consensus        85 ~g~~~~A~~~~~~a   98 (281)
T 2c2l_A           85 MESYDEAIANLQRA   98 (281)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            99999999999765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=95.03  E-value=0.1  Score=40.47  Aligned_cols=108  Identities=9%  Similarity=-0.131  Sum_probs=72.0

Q ss_pred             ccHHHHHHHHHcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHH
Q psy11525         80 PYISVLHSYAASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQA  156 (244)
Q Consensus        80 p~~~~l~~~l~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A  156 (244)
                      -....+.+++..|..   ++-+-.+  ++...|..+|....+.++++.|+.+|.+.=         .+... .+-....|
T Consensus        10 ~~~~~l~~~~~~~~~---l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---------~~~P~~~~~~~~lg   77 (151)
T 3gyz_A           10 SISTAVIDAINSGAT---LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC---------IYDFYNVDYIMGLA   77 (151)
T ss_dssp             HHHHHHHHHHHTSCC---TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCC---HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHHHH
Confidence            345677777776642   1111122  245689999999999999999999998632         11111 12235678


Q ss_pred             HHHHHcCCHHHHHHHHHHC-----CCHHH---HHHHHHHhcCHHHHHHHHH
Q psy11525        157 EMYLLGGNISEAESILLQH-----GLIFR---AIQVSILTHNWDRALELAL  199 (244)
Q Consensus       157 ~ia~~~G~~~eAe~~~l~~-----g~~~~---Ai~m~~~l~~W~~Al~LA~  199 (244)
                      .++...|++++|...|.++     +.+..   -=..|..+|++++|++.-+
T Consensus        78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~  128 (151)
T 3gyz_A           78 AIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE  128 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999776     22221   1346778888888876543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=94.97  E-value=0.41  Score=41.59  Aligned_cols=140  Identities=11%  Similarity=0.012  Sum_probs=89.2

Q ss_pred             HHHcCCHHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC--CcHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI--PVKAAQ  154 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~--~~~~~~  154 (244)
                      |...|++++|.......       ..    ...+..||......++++.|..+|.+.-+     ..+.....  ......
T Consensus       192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~  266 (378)
T 3q15_A          192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK-----VSREKVPDLLPKVLFG  266 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHHHHCGGGHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHHhhCChhHHHHHHH
Confidence            47889988888766542       22    24677788888889999999888876422     12222111  112345


Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCC---------HHH----HHHHHHHhcC---HHHHHHHHHhcCCc--hhHHHHHHHHHH
Q psy11525        155 QAEMYLLGGNISEAESILLQHGL---------IFR----AIQVSILTHN---WDRALELALRHKTH--IDTVLYQRKKYL  216 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~g~---------~~~----Ai~m~~~l~~---W~~Al~LA~~~~~~--~~~vl~~r~~yl  216 (244)
                      .|.++...|++++|...|.++=.         ...    .-.+|...++   .++|+...++.+..  +..+...-..++
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y  346 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF  346 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence            78999999999999999876411         111    1234445556   88888888886633  445555555566


Q ss_pred             HHcCC-cccHHHHHhcc
Q psy11525        217 DNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       217 ~~~~~-~e~~~~f~~~~  232 (244)
                      ...|+ .++.+.|+++.
T Consensus       347 ~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          347 ESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            66666 56666666663

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=94.95  E-value=0.17  Score=37.44  Aligned_cols=59  Identities=14%  Similarity=0.090  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        108 ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       108 ~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      ..|..||..+.+.++++.|..+|.+.=         ++... ......+|.++..+|++++|.+.|.++
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al---------~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAI---------ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH---------HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            468899999999999999999997631         11111 112345788999999999998877654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=94.84  E-value=0.16  Score=43.53  Aligned_cols=108  Identities=16%  Similarity=0.142  Sum_probs=70.8

Q ss_pred             HHHcCCHHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHHH
Q psy11525         88 YAASHSWPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---PVKAA  153 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~~  153 (244)
                      |...|++++|....+..       ..    ...|..+|......++++.|...|.+.-     .........   .....
T Consensus       197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~  271 (406)
T 3sf4_A          197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL-----LLARQLKDRAVEAQSCY  271 (406)
T ss_dssp             HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-----HHHHhCcCchHHHHHHH
Confidence            47789999888877653       11    2378888999999999998888887532     111111110   11224


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHCCCH--------------HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        154 QQAEMYLLGGNISEAESILLQHGLI--------------FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l~~g~~--------------~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ..|.++...|++++|...|.++-..              ...-..|..+|++++|++..++
T Consensus       272 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  332 (406)
T 3sf4_A          272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  332 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5789999999999999888765221              1123466778888888765544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=94.81  E-value=0.43  Score=37.95  Aligned_cols=80  Identities=16%  Similarity=0.079  Sum_probs=55.8

Q ss_pred             HHHcCCHHHHHHHHhcc----CC--------H-----HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc
Q psy11525         88 YAASHSWPQALSLCRTL----ND--------D-----ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV  150 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~----~~--------~-----~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~  150 (244)
                      +...|+|++|....+..    ++        .     ..|..+|.....-++++.|..||.+.     +....+.-++..
T Consensus        21 l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA-----L~l~n~~~e~~p   95 (159)
T 2hr2_A           21 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA-----LHYFNRRGELNQ   95 (159)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHCCTTS
T ss_pred             HHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHhhhccccCCC
Confidence            47899999999888763    22        2     29999999999999999999999863     222333333322


Q ss_pred             -H---H----HHHHHHHHHcCCHHHHHHHH
Q psy11525        151 -K---A----AQQAEMYLLGGNISEAESIL  172 (244)
Q Consensus       151 -~---~----~~~A~ia~~~G~~~eAe~~~  172 (244)
                       .   .    -+.|..+..+|+++||...|
T Consensus        96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y  125 (159)
T 2hr2_A           96 DEGKLWISAVYSRALALDGLGRGAEAMPEF  125 (159)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHhHHHHHHHCCCHHHHHHHH
Confidence             1   2    35677777777777766655

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=94.81  E-value=0.42  Score=35.17  Aligned_cols=46  Identities=7%  Similarity=-0.009  Sum_probs=39.4

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      +...|+|++|...-...     .....|..+|......++++-|..+|.+.
T Consensus        18 ~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A           18 AYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            58899999999887663     56789999999999999999999888753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=94.77  E-value=0.64  Score=35.19  Aligned_cols=106  Identities=8%  Similarity=-0.135  Sum_probs=69.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLLGGNISEAESILLQH-----GLIF  179 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~  179 (244)
                      +...|..+|......++++.|+.+|.+.-         .+... .......|.++...|++++|...|.++     +.+.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al---------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~   90 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALC---------VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR   90 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHH---------HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence            34578889999999999999999987531         11111 112346789999999999999999875     2222


Q ss_pred             H---HHHHHHHhcCHHHHHHHHHh---cC---CchhHHHHHHHHHHHHcC
Q psy11525        180 R---AIQVSILTHNWDRALELALR---HK---THIDTVLYQRKKYLDNLE  220 (244)
Q Consensus       180 ~---Ai~m~~~l~~W~~Al~LA~~---~~---~~~~~vl~~r~~yl~~~~  220 (244)
                      .   .-..|..+|++++|++..++   .+   +....+......+++...
T Consensus        91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~  140 (148)
T 2vgx_A           91 FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIK  140 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHHH
Confidence            2   23467889999998776544   22   223444445555555543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=94.76  E-value=0.34  Score=33.64  Aligned_cols=86  Identities=14%  Similarity=0.064  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH--
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLIF--  179 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~--  179 (244)
                      ...|..+|......++++.|...|.+.-..        -..........|.++...|++++|...|.++     +.+.  
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHH
Confidence            467889999999999999999988764211        0111122346788999999999999988764     2221  


Q ss_pred             -HHHHHHHHhcCHHHHHHHHHh
Q psy11525        180 -RAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       180 -~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                       ..-.++..++++++|++..++
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~  102 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQK  102 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHH
Confidence             224567788889888876554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=94.70  E-value=0.18  Score=38.21  Aligned_cols=79  Identities=16%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             HHHHcCCHHHHHHHHhccC-----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTLN-----------------------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYIN  143 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~~-----------------------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~  143 (244)
                      .+...|+|++|........                       ....|..+|...+..++++.|..+|.+.=        +
T Consensus        20 ~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al--------~   91 (162)
T 3rkv_A           20 ELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL--------K   91 (162)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------H
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--------h
Confidence            4588999999988665531                       12678888888777788777777666421        1


Q ss_pred             HhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525        144 HIKGI-PVKAAQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       144 ~i~~~-~~~~~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                       +... .....+.|.++...|++++|...|.+
T Consensus        92 -~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~  122 (162)
T 3rkv_A           92 -REETNEKALFRRAKARIAAWKLDEAEEDLKL  122 (162)
T ss_dssp             -HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -cCCcchHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence             1111 12235678888888888888877754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=94.67  E-value=0.49  Score=35.12  Aligned_cols=104  Identities=8%  Similarity=-0.107  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH-
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLLGGNISEAESILLQH-----GLIF-  179 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~-  179 (244)
                      ...|..+|......++++.|+..|.+.-         .+... .......|.++...|++++|...|.++     +.+. 
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al---------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~   88 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALC---------MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRF   88 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHH---------HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHH
Confidence            3567788999999999999999887521         11111 112356789999999999999999874     2221 


Q ss_pred             --HHHHHHHHhcCHHHHHHHHHh---cC---CchhHHHHHHHHHHHHc
Q psy11525        180 --RAIQVSILTHNWDRALELALR---HK---THIDTVLYQRKKYLDNL  219 (244)
Q Consensus       180 --~Ai~m~~~l~~W~~Al~LA~~---~~---~~~~~vl~~r~~yl~~~  219 (244)
                        ..-.++..++++++|++..++   .+   +....+......+++..
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A           89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence              234567889999998776543   11   22344444445555443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=94.63  E-value=0.3  Score=36.05  Aligned_cols=83  Identities=8%  Similarity=-0.047  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC----CCHHHH-
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH----GLIFRA-  181 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~----g~~~~A-  181 (244)
                      ...|..+|....+.++++.|..+|.+.=        +.--........+|.++..+|++++|...|.++    .....| 
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~   84 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAV--------KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY   84 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence            3568889999999999999999997631        111111122356788999999999998887654    111111 


Q ss_pred             ---HHHHHHhcCHHHHHHH
Q psy11525        182 ---IQVSILTHNWDRALEL  197 (244)
Q Consensus       182 ---i~m~~~l~~W~~Al~L  197 (244)
                         -..+..+++|++|++.
T Consensus        85 ~~lg~~~~~~~~~~~A~~~  103 (126)
T 4gco_A           85 IRKAACLVAMREWSKAQRA  103 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHH
Confidence               2345556666666544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=94.58  E-value=0.33  Score=33.42  Aligned_cols=87  Identities=9%  Similarity=-0.041  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCH--
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLI--  178 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~--  178 (244)
                      ....|..+|......++++.|..+|.+.-..        -..........|.++...|++++|...|.++     +.+  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   74 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKG   74 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHH
Confidence            3467889999999999999999998864211        1111122356788889999999999888664     111  


Q ss_pred             -HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        179 -FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       179 -~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                       ...-.++..++++++|++..++
T Consensus        75 ~~~~a~~~~~~~~~~~A~~~~~~   97 (118)
T 1elw_A           75 YSRKAAALEFLNRFEEAKRTYEE   97 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHH
Confidence             1123567778888888766544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=94.52  E-value=0.77  Score=31.98  Aligned_cols=86  Identities=10%  Similarity=-0.087  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC-----CH---
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG-----LI---  178 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~---  178 (244)
                      ...|..+|......++++.|..+|.+.-..        -..........|.++...|++++|...|.++-     .+   
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHH
Confidence            467888999999999999999988764211        01111223567899999999999999987641     11   


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        179 FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       179 ~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ...-..+..+++|++|++..++
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~  105 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKK  105 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHH
Confidence            1224578888999998876654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.51  E-value=0.24  Score=47.58  Aligned_cols=81  Identities=14%  Similarity=-0.054  Sum_probs=53.9

Q ss_pred             HHHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAA  153 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~  153 (244)
                      .-+..|++++|.+.++..             .+...|..+|...+..++++.|...|.+.-..        --...+-..
T Consensus       400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~  471 (681)
T 2pzi_A          400 QATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVW  471 (681)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHH
T ss_pred             hcccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHH
Confidence            337899999998877653             24578999999999999999999888653210        001111223


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHC
Q psy11525        154 QQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      ..|.++...|++++|.+.|.++
T Consensus       472 ~lg~~~~~~g~~~~A~~~~~~a  493 (681)
T 2pzi_A          472 YRAVAELLTGDYDSATKHFTEV  493 (681)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            4566666667777776666553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.51  E-value=0.14  Score=49.28  Aligned_cols=45  Identities=11%  Similarity=-0.072  Sum_probs=40.1

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAA  132 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~  132 (244)
                      ++..|++++|.+..+..     .+...|..+|...+..++++.|+.+|.+
T Consensus       443 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  492 (681)
T 2pzi_A          443 LLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTE  492 (681)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            57899999999988774     5788999999999999999999999876

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=94.50  E-value=0.46  Score=40.25  Aligned_cols=39  Identities=10%  Similarity=0.181  Sum_probs=28.8

Q ss_pred             HHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         95 PQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        95 ~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      ++|..+.+..      .....|..+|......++++.|+.+|.+.
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            7777665542      24568888888888888888888888763

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=94.47  E-value=0.78  Score=39.79  Aligned_cols=136  Identities=10%  Similarity=-0.097  Sum_probs=83.7

Q ss_pred             HHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc-------
Q psy11525         89 AASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV-------  150 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~-------  150 (244)
                      ...|++++|....+..       .    ....+..+|......++++.|...|.+.        +.-.....+       
T Consensus       112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a--------l~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA--------LDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------HHHHHTSTTCHHHHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH--------HHHHHhCCCchhhHHH
Confidence            6889999999887653       1    2457788888888889988888877652        222222221       


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHCCC-------HHHH-------HHHHHHhcCHHHHHHHHHh-------cC-CchhHH
Q psy11525        151 KAAQQAEMYLLGGNISEAESILLQHGL-------IFRA-------IQVSILTHNWDRALELALR-------HK-THIDTV  208 (244)
Q Consensus       151 ~~~~~A~ia~~~G~~~eAe~~~l~~g~-------~~~A-------i~m~~~l~~W~~Al~LA~~-------~~-~~~~~v  208 (244)
                      .....|.++...|++++|.+.|.++=.       ....       =.+|..++++++|++..++       .+ +.....
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  263 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV  263 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence            123578889999999999988866522       2111       2356677888877655443       22 222233


Q ss_pred             HHHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        209 LYQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       209 l~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                      +..-..-+...|+ .++.+.|+++.
T Consensus       264 ~~~la~~~~~~g~~~~A~~~~~~al  288 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQFIEEGL  288 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3333333344444 56666666654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=94.41  E-value=0.33  Score=36.84  Aligned_cols=86  Identities=12%  Similarity=0.023  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCH---
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLI---  178 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~---  178 (244)
                      ...|..+|......++++.|..+|.+.-.        .--....-...+|.++...|++++|...|.++     +.+   
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   82 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALS--------IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAW   82 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            46789999999999999999999986421        11111223356899999999999999999775     111   


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        179 FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       179 ~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ..--..|..++++++|++..++
T Consensus        83 ~~lg~~~~~~g~~~~A~~~~~~  104 (164)
T 3sz7_A           83 SRLGLARFDMADYKGAKEAYEK  104 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHH
Confidence            1224567788999998776543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=94.41  E-value=0.39  Score=34.52  Aligned_cols=85  Identities=13%  Similarity=-0.043  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC-----CHH--
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG-----LIF--  179 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~~--  179 (244)
                      ...|..+|......++++.|..+|.+.=        +.--.........|.++...|++++|...|.++=     .+.  
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   75 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMI--------KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY   75 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHH--------HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHH
Confidence            3578999999999999999999987531        1111111233568999999999999999887641     111  


Q ss_pred             -HHHHHHHHhcCHHHHHHHHH
Q psy11525        180 -RAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       180 -~Ai~m~~~l~~W~~Al~LA~  199 (244)
                       .--..+..++++++|++.-+
T Consensus        76 ~~lg~~~~~~~~~~~A~~~~~   96 (126)
T 3upv_A           76 IRKATAQIAVKEYASALETLD   96 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCHHHHHHHHH
Confidence             12345667778877766543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=94.40  E-value=0.29  Score=37.45  Aligned_cols=79  Identities=14%  Similarity=0.082  Sum_probs=56.4

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHH-HHHcCCH--HHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGM-ATYSRDL--ATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMY  159 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~-Al~~~~l--~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia  159 (244)
                      |...|++++|....+..     .+...|..+|.. ....+++  +.|..+|.+.-.        .--.........|.++
T Consensus        54 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~  125 (177)
T 2e2e_A           54 YLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA--------LDSNEITALMLLASDA  125 (177)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHH--------HCTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH--------hCCCcHHHHHHHHHHH
Confidence            48899999999988764     567889999988 7788887  888877764321        1001111234578888


Q ss_pred             HHcCCHHHHHHHHHH
Q psy11525        160 LLGGNISEAESILLQ  174 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~  174 (244)
                      ...|++++|...|.+
T Consensus       126 ~~~g~~~~A~~~~~~  140 (177)
T 2e2e_A          126 FMQANYAQAIELWQK  140 (177)
T ss_dssp             HHTTCHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHH
Confidence            888888888887765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=94.32  E-value=0.47  Score=33.54  Aligned_cols=87  Identities=9%  Similarity=-0.021  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC-----CHH-
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG-----LIF-  179 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~~-  179 (244)
                      +...|..+|......++++.|..+|.+.-...        ..........|.++...|++++|.+.|.++-     .+. 
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--------PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHH
Confidence            45788999999999999999999987643221        0011223567888899999999999887641     111 


Q ss_pred             --HHHHHHHHhcCHHHHHHHHHh
Q psy11525        180 --RAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       180 --~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                        ..-.++..++++++|++..++
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~  109 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQK  109 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHH
Confidence              123567788888888776654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=94.27  E-value=1.5  Score=36.95  Aligned_cols=93  Identities=11%  Similarity=-0.022  Sum_probs=59.7

Q ss_pred             EEEEecCCcEEEeecCcc-HHHHHHHHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHH
Q psy11525         64 LTIRRYDGTVINYPISPY-ISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYI  142 (244)
Q Consensus        64 v~~~~~~G~~~~~~~~p~-~~~l~~~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l  142 (244)
                      +.+. .+|+.+.....+. .+.+.+++...-          -.....+..+|..++..++++.|+..|.+.=        
T Consensus        84 ~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l----------p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al--------  144 (287)
T 3qou_A           84 VYLF-QNGQPVDGFQGPQPEEAIRALLDXVL----------PREEELXAQQAMQLMQESNYTDALPLLXDAW--------  144 (287)
T ss_dssp             EEEE-ETTEEEEEEESCCCHHHHHHHHHHHS----------CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------
T ss_pred             EEEE-ECCEEEEEeeCCCCHHHHHHHHHHHc----------CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH--------
Confidence            4444 3787765433333 345555543221          2445678899999999999999999888631        


Q ss_pred             HHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        143 NHIKGIPVKAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       143 ~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      ..--+..+-....|.+++..|++++|...|.+.
T Consensus       145 ~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~  177 (287)
T 3qou_A          145 QLSNQNGEIGLLLAETLIALNRSEDAEAVLXTI  177 (287)
T ss_dssp             HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            111111122345788888999999998888776

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=94.27  E-value=0.3  Score=38.36  Aligned_cols=80  Identities=11%  Similarity=0.058  Sum_probs=56.7

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHh
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDD----------------ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHI  145 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~----------------~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i  145 (244)
                      .+...|+|++|.......     ...                ..|..+|......++++.|..+|.+.-..        -
T Consensus        47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~  118 (198)
T 2fbn_A           47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--------D  118 (198)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------S
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------C
Confidence            358899999999887763     222                78999999999999999998888753211        0


Q ss_pred             hCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525        146 KGIPVKAAQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       146 ~~~~~~~~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      ..........|.++...|++++|...|.+
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  147 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYK  147 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            01112235678888888888888777754

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=94.26  E-value=0.43  Score=33.47  Aligned_cols=85  Identities=13%  Similarity=0.080  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCCHH-------
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGLIF-------  179 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~-------  179 (244)
                      ...|..+|......++++.|..+|.+.-..        -..........|.++...|++++|...|.++-...       
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   75 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY   75 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence            457889999999999999999988764221        11111223567889999999999998887642211       


Q ss_pred             --------HHHHHHHHhcCHHHHHHHHH
Q psy11525        180 --------RAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       180 --------~Ai~m~~~l~~W~~Al~LA~  199 (244)
                              ..-.++..+++|++|++.-+
T Consensus        76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~  103 (131)
T 1elr_A           76 RQIAKAYARIGNSYFKEEKYKDAIHFYN  103 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence                    11345667777777766554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=94.25  E-value=0.92  Score=32.16  Aligned_cols=83  Identities=10%  Similarity=-0.113  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHHC-----CC---H
Q psy11525        110 WACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQQAEMYLLGGNISEAESILLQH-----GL---I  178 (244)
Q Consensus       110 W~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~---~  178 (244)
                      +-.+|...+..++++.|...|.++-        +.--..+   +.....|.++...|++++|...|.+.     +.   +
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   76 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFL--------ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAA   76 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH--------HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH--------HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccH
Confidence            4567888889999999988887531        1111111   23356899999999999999998764     22   1


Q ss_pred             ---HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        179 ---FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       179 ---~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                         ...-..+..++++++|++.-++
T Consensus        77 ~~~~~la~~~~~~g~~~~A~~~~~~  101 (129)
T 2xev_A           77 GGLLKLGLSQYGEGKNTEAQQTLQQ  101 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence               1224567888999999876544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=94.24  E-value=0.55  Score=33.82  Aligned_cols=87  Identities=11%  Similarity=-0.054  Sum_probs=60.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC-----CHH
Q psy11525        105 NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG-----LIF  179 (244)
Q Consensus       105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~~  179 (244)
                      .+...|..+|......++++.|..+|.+.-..        -..........|.++...|++++|...|.++-     .+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~   78 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK   78 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHH
Confidence            35678999999999999999999998763211        11112234568999999999999999887652     111


Q ss_pred             ---HHHHHHHHhcCHHHHHHHHH
Q psy11525        180 ---RAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       180 ---~Ai~m~~~l~~W~~Al~LA~  199 (244)
                         .--..+..+++|++|++..+
T Consensus        79 ~~~~l~~~~~~~~~~~~A~~~~~  101 (137)
T 3q49_B           79 AHFFLGQCQLEMESYDEAIANLQ  101 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHH
Confidence               22345677888888866544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.23  E-value=0.46  Score=40.06  Aligned_cols=109  Identities=11%  Similarity=0.025  Sum_probs=75.0

Q ss_pred             HHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHc-CCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHH
Q psy11525         88 YAASHSWPQALSLCRTL-------N----DDILWACLAGMATYS-RDLATSEEAYAAIEQVDKVMYINHIKGI---PVKA  152 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~-~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~  152 (244)
                      |...|++++|....+..       .    ....|..+|...... ++++.|..+|.+.-..     .......   ....
T Consensus        87 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~-----~~~~~~~~~~~~~~  161 (292)
T 1qqe_A           87 FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW-----YAQDQSVALSNKCF  161 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----HHHTTCHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----HHhCCChHHHHHHH
Confidence            47789999998766553       1    135788899988886 9999999998864221     1111000   1113


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCCC-------H--------HHHHHHHHHhcCHHHHHHHHHhc
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHGL-------I--------FRAIQVSILTHNWDRALELALRH  201 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g~-------~--------~~Ai~m~~~l~~W~~Al~LA~~~  201 (244)
                      ...|.++..+|++++|...|.++..       .        ...-..+..++++++|+..-++.
T Consensus       162 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  225 (292)
T 1qqe_A          162 IKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG  225 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4579999999999999999987422       1        22345688899999998876653

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=94.23  E-value=0.51  Score=43.99  Aligned_cols=83  Identities=10%  Similarity=0.071  Sum_probs=59.2

Q ss_pred             HHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH---
Q psy11525         88 YAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK---  151 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~---  151 (244)
                      +-..|+|++|..+++..             .+-.....||......++++-|+..|.+.     +...+++-.-..+   
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----L~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM-----VDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCTTCHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----HHHHHHHcCCCCHHHH
Confidence            45789999998887553             23567888999999999999999888763     3333344333322   


Q ss_pred             --HHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        152 --AAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       152 --~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                        ...+|.++..+|++++|+.+|.++
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~A  419 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKA  419 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence              245788888888888888887653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=94.19  E-value=0.66  Score=34.26  Aligned_cols=118  Identities=11%  Similarity=-0.052  Sum_probs=74.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH-
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLIF-  179 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~-  179 (244)
                      ....|..+|......++++.|..+|.+.-..        -..........|.++...|++++|...|.++     +.+. 
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   83 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG   83 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence            3467999999999999999999998764211        1111122356789999999999999998764     2222 


Q ss_pred             --HHHHHHHHhcCHHHHHHHHHh---cCCchhHH---HHHHHHHHHHcCCcccHHHHHhc
Q psy11525        180 --RAIQVSILTHNWDRALELALR---HKTHIDTV---LYQRKKYLDNLEKIETNEKFLRL  231 (244)
Q Consensus       180 --~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~v---l~~r~~yl~~~~~~e~~~~f~~~  231 (244)
                        ..-..+..++++++|++..++   .++.-...   +.....++......++.+.|.+.
T Consensus        84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence              123567889999999877654   23331222   22222244433335555555554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.07  E-value=0.31  Score=38.86  Aligned_cols=86  Identities=8%  Similarity=-0.018  Sum_probs=62.5

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChh--HHHHHHHhhCCCcHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVD--KVMYINHIKGIPVKAAQQAEMYL  160 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~--~v~~l~~i~~~~~~~~~~A~ia~  160 (244)
                      +...|++++|.+.+...     .....|..+|......++++.|..+|.+.-...  -..+...   +.+.....|.+..
T Consensus        52 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---~~~~~~~~g~~~~  128 (228)
T 4i17_A           52 ADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKL---YAIYYLKEGQKFQ  128 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH---HHHHHHHHHHHHH
T ss_pred             HHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH---HHHHHHHHhHHHH
Confidence            48899999999988774     457889999999999999999999887542110  0000000   0012456788999


Q ss_pred             HcCCHHHHHHHHHHCC
Q psy11525        161 LGGNISEAESILLQHG  176 (244)
Q Consensus       161 ~~G~~~eAe~~~l~~g  176 (244)
                      ..|++++|.+.|.++=
T Consensus       129 ~~~~~~~A~~~~~~al  144 (228)
T 4i17_A          129 QAGNIEKAEENYKHAT  144 (228)
T ss_dssp             HTTCHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHH
Confidence            9999999999998863

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=94.01  E-value=0.66  Score=39.24  Aligned_cols=133  Identities=9%  Similarity=0.020  Sum_probs=77.6

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHH--
Q psy11525         89 AASHSWPQALSLCRTL-----NDDI-LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYL--  160 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~-lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~--  160 (244)
                      ...|++++|..+-+..     .... .|..+|......++++.|+.+|.+.-...         . .......+...+  
T Consensus       110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---------p-~~~~~~~~~a~~~~  179 (308)
T 2ond_A          110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---------R-TRHHVYVTAALMEY  179 (308)
T ss_dssp             HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---------T-CCTHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------C-CCHHHHHHHHHHHH
Confidence            6789999999877663     2234 89999999999999999999988642211         0 011112222222  


Q ss_pred             -HcCCHHHHHHHHHHC-----CCH---HHHHHHHHHhcCHHHHHHHHHhc------CCc-hhHHHHHHHHHHHHcCCc-c
Q psy11525        161 -LGGNISEAESILLQH-----GLI---FRAIQVSILTHNWDRALELALRH------KTH-IDTVLYQRKKYLDNLEKI-E  223 (244)
Q Consensus       161 -~~G~~~eAe~~~l~~-----g~~---~~Ai~m~~~l~~W~~Al~LA~~~------~~~-~~~vl~~r~~yl~~~~~~-e  223 (244)
                       ..|++++|.++|.++     +.+   ..-..++..+|+.++|..+-++-      ++. -..+......++...|.. +
T Consensus       180 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~  259 (308)
T 2ond_A          180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS  259 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence             258888888777654     111   11244556667777776554431      221 233444455566666664 3


Q ss_pred             cHHHHHhc
Q psy11525        224 TNEKFLRL  231 (244)
Q Consensus       224 ~~~~f~~~  231 (244)
                      ....++++
T Consensus       260 a~~~~~~a  267 (308)
T 2ond_A          260 ILKVEKRR  267 (308)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            33444444

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=93.96  E-value=1.5  Score=34.68  Aligned_cols=106  Identities=16%  Similarity=0.088  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHh---hCCC-c-----HHHHHHHHHHHcCCHHHHHHHHHHCC
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHI---KGIP-V-----KAAQQAEMYLLGGNISEAESILLQHG  176 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i---~~~~-~-----~~~~~A~ia~~~G~~~eAe~~~l~~g  176 (244)
                      ....|...|....+.++++.|..+|.+.=     .+.-..   ..+. .     -....|.++..+|+|++|...|    
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL-----~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~----   80 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAM-----EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSA----   80 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHH----
Confidence            45688999999999999999999998632     111110   0000 0     2345788888899999988876    


Q ss_pred             CHHHHHHHHHHhcCHHHHHHHHHhcCCchhHHH----HHHHHHHHHcCC-cccHHHHHhcc
Q psy11525        177 LIFRAIQVSILTHNWDRALELALRHKTHIDTVL----YQRKKYLDNLEK-IETNEKFLRLQ  232 (244)
Q Consensus       177 ~~~~Ai~m~~~l~~W~~Al~LA~~~~~~~~~vl----~~r~~yl~~~~~-~e~~~~f~~~~  232 (244)
                        ++||++      |+++++    .++.-...+    +.|..-|..+|+ +|+.+-|+++.
T Consensus        81 --~kAL~l------~n~~~e----~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           81 --DKALHY------FNRRGE----LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             --HHHHHH------HHHHCC----TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --HHHHHh------hhcccc----CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence              445655      555543    344433444    667777777777 68888888874

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=93.92  E-value=1.2  Score=36.26  Aligned_cols=132  Identities=14%  Similarity=0.016  Sum_probs=86.9

Q ss_pred             cCCHHHHHHHHhcc---CCHHHHHHHHHHHHH----cCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH--
Q psy11525         91 SHSWPQALSLCRTL---NDDILWACLAGMATY----SRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL--  161 (244)
Q Consensus        91 ~~~~~~A~~~~~~~---~~~~lW~~LA~~Al~----~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~--  161 (244)
                      .+++++|....+..   .....|..||.....    .++++.|..+|.+.-+..          ..+.....|.++..  
T Consensus        91 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~  160 (273)
T 1ouv_A           91 SQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----------DGDGCTILGSLYDAGR  160 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTS
T ss_pred             ccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHcCC
Confidence            89999998877653   678899999999999    899999998887632211          11223456778877  


Q ss_pred             --cCCHHHHHHHHHHC---CCHHHH---HHHHHH----hcCHHHHHHHHHhcC-CchhHHHHHHHHHHHH----cC-Ccc
Q psy11525        162 --GGNISEAESILLQH---GLIFRA---IQVSIL----THNWDRALELALRHK-THIDTVLYQRKKYLDN----LE-KIE  223 (244)
Q Consensus       162 --~G~~~eAe~~~l~~---g~~~~A---i~m~~~----l~~W~~Al~LA~~~~-~~~~~vl~~r~~yl~~----~~-~~e  223 (244)
                        .|++++|...|.++   +.+...   -.+|..    .+++++|++.-++-- ..-..........+..    .+ ..+
T Consensus       161 ~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~  240 (273)
T 1ouv_A          161 GTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQ  240 (273)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHH
Confidence              89999999998765   443322   346777    889999987765421 1112333333333333    33 456


Q ss_pred             cHHHHHhcc
Q psy11525        224 TNEKFLRLQ  232 (244)
Q Consensus       224 ~~~~f~~~~  232 (244)
                      +.+.|+++.
T Consensus       241 A~~~~~~a~  249 (273)
T 1ouv_A          241 AIENFKKGC  249 (273)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            667777664

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=93.82  E-value=0.15  Score=36.71  Aligned_cols=77  Identities=12%  Similarity=-0.026  Sum_probs=48.1

Q ss_pred             cCCHHHHHHHHhcc-C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         91 SHSWPQALSLCRTL-N-------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        91 ~~~~~~A~~~~~~~-~-------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      .|++++|....+.. .       ....|..||......++++.|..+|.+.-        +.--...+.....|.++...
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al--------~~~p~~~~~~~~l~~~~~~~   74 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGV--------KQFPNHQALRVFYAMVLYNL   74 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCTTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCchHHHHHHHHHHHHc
Confidence            45666666655442 1       24678889999999999999988887521        11111122235578888888


Q ss_pred             CCHHHHHHHHHHC
Q psy11525        163 GNISEAESILLQH  175 (244)
Q Consensus       163 G~~~eAe~~~l~~  175 (244)
                      |++++|...|.++
T Consensus        75 g~~~~A~~~~~~a   87 (117)
T 3k9i_A           75 GRYEQGVELLLKI   87 (117)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            8888888877553

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=93.60  E-value=2.1  Score=35.71  Aligned_cols=23  Identities=9%  Similarity=0.112  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Q psy11525        109 LWACLAGMATYSRDLATSEEAYA  131 (244)
Q Consensus       109 lW~~LA~~Al~~~~l~~A~~~y~  131 (244)
                      .|..+|......++++.|..+|.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~  179 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFE  179 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHH
Confidence            44445555555555555555444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=93.55  E-value=0.76  Score=33.46  Aligned_cols=83  Identities=13%  Similarity=-0.175  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHHH---
Q psy11525        109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLIFR---  180 (244)
Q Consensus       109 lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~~---  180 (244)
                      .|-.+|...+..++++.|..+|.+.=        +.--...+-...+|.++...|++++|...|.++     +.+..   
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al--------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~   90 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVC--------QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA   90 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHH--------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            47778889999999999998887521        111111122356788888999999888887654     11111   


Q ss_pred             HHHHHHHhcCHHHHHHHHH
Q psy11525        181 AIQVSILTHNWDRALELAL  199 (244)
Q Consensus       181 Ai~m~~~l~~W~~Al~LA~  199 (244)
                      --..+..++++++|++..+
T Consensus        91 la~~~~~~g~~~~A~~~~~  109 (121)
T 1hxi_A           91 LAVSHTNEHNANAALASLR  109 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHH
Confidence            1134555666666665443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=93.52  E-value=0.44  Score=40.51  Aligned_cols=108  Identities=8%  Similarity=0.012  Sum_probs=65.6

Q ss_pred             HHHHHHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc--
Q psy11525         84 VLHSYAASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV--  150 (244)
Q Consensus        84 ~l~~~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~--  150 (244)
                      ...-|...|+|++|.......       .    ....|..+|......++++.|..+|.+.-+.        .....+  
T Consensus        42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~~~~g~~~  113 (307)
T 2ifu_A           42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM--------YVENGTPD  113 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--------HHTTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------HHHcCCHH
Confidence            334467789999988766543       1    1346777888888888888888877643211        111111  


Q ss_pred             ----HHHHHHHHHHHcCCHHHHHHHHHHCC-------CHHHH-------HHHHHHhcCHHHHHHHHHh
Q psy11525        151 ----KAAQQAEMYLLGGNISEAESILLQHG-------LIFRA-------IQVSILTHNWDRALELALR  200 (244)
Q Consensus       151 ----~~~~~A~ia~~~G~~~eAe~~~l~~g-------~~~~A-------i~m~~~l~~W~~Al~LA~~  200 (244)
                          .....|.++.. |++++|...|.++-       ++..+       -.+|..++++++|++..++
T Consensus       114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  180 (307)
T 2ifu_A          114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK  180 (307)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                12346677766 88888877776542       22222       3456677787777665443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=93.27  E-value=0.82  Score=41.58  Aligned_cols=101  Identities=11%  Similarity=-0.019  Sum_probs=69.5

Q ss_pred             HHHcCCHHHHHHHHhcc-----CC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC
Q psy11525         88 YAASHSWPQALSLCRTL-----ND---------------DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG  147 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~---------------~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~  147 (244)
                      +...|+|++|....+..     ..               ...|..+|...++.++++.|..+|.+.=.        .--.
T Consensus       278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--------~~p~  349 (457)
T 1kt0_A          278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG--------LDSA  349 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HSTT
T ss_pred             HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--------cCCc
Confidence            48899999999877653     22               47899999999999999999888876321        1111


Q ss_pred             CCcHHHHHHHHHHHcCCHHHHHHHHHHCCCH--------HHHHHHHHHhcCHHHHHH
Q psy11525        148 IPVKAAQQAEMYLLGGNISEAESILLQHGLI--------FRAIQVSILTHNWDRALE  196 (244)
Q Consensus       148 ~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~--------~~Ai~m~~~l~~W~~Al~  196 (244)
                      ......++|.++..+|++++|...|.++=..        ...-.++..++++++|..
T Consensus       350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  406 (457)
T 1kt0_A          350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR  406 (457)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            1123356899999999999999999875221        112344555666666543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=93.21  E-value=0.47  Score=34.34  Aligned_cols=82  Identities=12%  Similarity=0.022  Sum_probs=52.8

Q ss_pred             HHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHH
Q psy11525         88 YAASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAA  153 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~  153 (244)
                      +...|++++|.+..+..       .    ....|..+|......++++.|..+|.+.-     ...+......   ....
T Consensus        59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~  133 (164)
T 3ro3_A           59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL-----AIAQELKDRIGEGRACW  133 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHccchHhHHHHHH
Confidence            48899999999888764       1    14568889999999999999998887632     2222221100   0123


Q ss_pred             HHHHHHHHcCCHHHHHHHHHH
Q psy11525        154 QQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      ..|.++...|++++|.+.|.+
T Consensus       134 ~la~~~~~~g~~~~A~~~~~~  154 (164)
T 3ro3_A          134 SLGNAYTALGNHDQAMHFAEK  154 (164)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHH
Confidence            456666667777766665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=93.15  E-value=2.7  Score=33.54  Aligned_cols=146  Identities=11%  Similarity=0.013  Sum_probs=81.0

Q ss_pred             HHHHHcCCHHHHHHHHhccC-----C---HHHHHHHHHHHHHcCCHHHHHHHHHHhCC-----hh--HHHHHHHhhC---
Q psy11525         86 HSYAASHSWPQALSLCRTLN-----D---DILWACLAGMATYSRDLATSEEAYAAIEQ-----VD--KVMYINHIKG---  147 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~~-----~---~~lW~~LA~~Al~~~~l~~A~~~y~~l~d-----~~--~v~~l~~i~~---  147 (244)
                      ..++..|+|++|......+.     +   ...|-.+|......++++.|..+|.++=.     ..  .+.+..-...   
T Consensus        12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~   91 (225)
T 2yhc_A           12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL   91 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence            34689999999999887751     1   46799999999999999999999876421     11  0111000000   


Q ss_pred             ---CCcHHHHHHHHHHHcCCHHHHHHHHHHC-------CCHHHH------------------HHHHHHhcCHHHHHHHHH
Q psy11525        148 ---IPVKAAQQAEMYLLGGNISEAESILLQH-------GLIFRA------------------IQVSILTHNWDRALELAL  199 (244)
Q Consensus       148 ---~~~~~~~~A~ia~~~G~~~eAe~~~l~~-------g~~~~A------------------i~m~~~l~~W~~Al~LA~  199 (244)
                         ..+.....+......|++++|...|.+.       .....|                  -..|...++|++|+...+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~  171 (225)
T 2yhc_A           92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE  171 (225)
T ss_dssp             HC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence               0000001111222256777777766543       111111                  235677888888876655


Q ss_pred             h---cCCc---hhHHHHHHHHHHHHcCCc-ccHHHHHhc
Q psy11525        200 R---HKTH---IDTVLYQRKKYLDNLEKI-ETNEKFLRL  231 (244)
Q Consensus       200 ~---~~~~---~~~vl~~r~~yl~~~~~~-e~~~~f~~~  231 (244)
                      +   ..|.   ..+.+.....-+...|+. +..+.|++.
T Consensus       172 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l  210 (225)
T 2yhc_A          172 GMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII  210 (225)
T ss_dssp             HHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            4   2222   345566666666666664 555555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=93.07  E-value=0.73  Score=42.06  Aligned_cols=85  Identities=13%  Similarity=0.094  Sum_probs=59.7

Q ss_pred             HHHHHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH
Q psy11525         85 LHSYAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK  151 (244)
Q Consensus        85 l~~~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~  151 (244)
                      +.++-..|+|++|..+++..             .+-.....||......++++.|+.-|.+.     +...+++-.-..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~-----L~i~~~~lg~~Hp  368 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT-----MEPYRIFFPGSHP  368 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH-----HHHHHHHSCSSCH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH-----HHhHHHHcCCCCh
Confidence            44567899999999988653             13467888999999999999999888764     3333344333322


Q ss_pred             H-----HHHHHHHHHcCCHHHHHHHHHH
Q psy11525        152 A-----AQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       152 ~-----~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      .     ..+|.++..+|++++|+.+|.+
T Consensus       369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          369 VRGVQVMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            2     3577888888888887777644

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=93.02  E-value=0.52  Score=40.92  Aligned_cols=80  Identities=13%  Similarity=0.028  Sum_probs=60.5

Q ss_pred             HHHcCCHHHHHHHHhcc-----CC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC
Q psy11525         88 YAASHSWPQALSLCRTL-----ND---------------DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG  147 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~---------------~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~  147 (244)
                      +...|+|++|....+..     ..               ...|..+|...+..++++-|..+|.+.=..        --.
T Consensus       157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--------~p~  228 (336)
T 1p5q_A          157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL--------DSN  228 (336)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTT
T ss_pred             HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC
Confidence            48899999999877663     22               489999999999999999999988764211        011


Q ss_pred             CCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        148 IPVKAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       148 ~~~~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      .......+|.++..+|++++|...|.++
T Consensus       229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a  256 (336)
T 1p5q_A          229 NEKGLSRRGEAHLAVNDFELARADFQKV  256 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            1122356899999999999999988765

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=92.90  E-value=1.7  Score=35.24  Aligned_cols=113  Identities=17%  Similarity=0.008  Sum_probs=75.2

Q ss_pred             HHHcCCHHHHHHHHhcc--------CCHHHHHHHHHHHHH--------cCCHHHHHHHHHHhCC-----hhHHHHHHHhh
Q psy11525         88 YAASHSWPQALSLCRTL--------NDDILWACLAGMATY--------SRDLATSEEAYAAIEQ-----VDKVMYINHIK  146 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~--------~~~~lW~~LA~~Al~--------~~~l~~A~~~y~~l~d-----~~~v~~l~~i~  146 (244)
                      |...|+|++|....+..        .....|..+|.....        .++++.|...|.++-.     ......+..+.
T Consensus        62 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~  141 (261)
T 3qky_A           62 YYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR  141 (261)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH
Confidence            58999999999988774        125678889998888        8999999999886421     11111111111


Q ss_pred             CC----CcHHHHHHHHHHHcCCHHHHHHHHHHC----CC---HHHH----HHHHHHh----------cCHHHHHHHHHh
Q psy11525        147 GI----PVKAAQQAEMYLLGGNISEAESILLQH----GL---IFRA----IQVSILT----------HNWDRALELALR  200 (244)
Q Consensus       147 ~~----~~~~~~~A~ia~~~G~~~eAe~~~l~~----g~---~~~A----i~m~~~l----------~~W~~Al~LA~~  200 (244)
                      ..    .+.....|.++...|++++|...|.+.    ..   ...|    -..|..+          +++++|+..-++
T Consensus       142 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~  220 (261)
T 3qky_A          142 ELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER  220 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence            11    112356799999999999999999764    11   2222    2345544          888999876554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=92.86  E-value=1.2  Score=38.61  Aligned_cols=124  Identities=9%  Similarity=-0.093  Sum_probs=78.7

Q ss_pred             cCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---------------c
Q psy11525         91 SHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---------------V  150 (244)
Q Consensus        91 ~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---------------~  150 (244)
                      .++|++|....+..     .....|..+|......++++.|..+|.+.-.        ......               .
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--------~~p~~~~~~~~~~~~~~~~~~~  197 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--------WLEYESSFSNEEAQKAQALRLA  197 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HTTTCCCCCSHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------HhhccccCChHHHHHHHHHHHH
Confidence            44455555443332     2457899999999999999999999986321        111111               2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHCC-----CHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHc
Q psy11525        151 KAAQQAEMYLLGGNISEAESILLQHG-----LIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNL  219 (244)
Q Consensus       151 ~~~~~A~ia~~~G~~~eAe~~~l~~g-----~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~  219 (244)
                      ....+|.++...|++++|...|.++=     .+.   ..-..|..++++++|++..++   .++...........-+...
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~  277 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  277 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            23568999999999999999997751     111   223467889999999766543   4454344444444444444


Q ss_pred             CCc
Q psy11525        220 EKI  222 (244)
Q Consensus       220 ~~~  222 (244)
                      |+.
T Consensus       278 ~~~  280 (336)
T 1p5q_A          278 RRQ  280 (336)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=92.85  E-value=0.97  Score=31.86  Aligned_cols=61  Identities=10%  Similarity=-0.050  Sum_probs=43.6

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHH
Q psy11525        105 NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILL  173 (244)
Q Consensus       105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l  173 (244)
                      .....|..+|......++++.|+.+|.+.-..        --.........|.++...|++++|...|.
T Consensus        17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~   77 (115)
T 2kat_A           17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--------DPTYSVAWKWLGKTLQGQGDRAGARQAWE   77 (115)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            46789999999999999999999988763211        00111123457888888888888887764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=92.83  E-value=1.7  Score=37.58  Aligned_cols=106  Identities=11%  Similarity=-0.041  Sum_probs=73.1

Q ss_pred             HHHcCCHHHHHHHHhccC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChh-HHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTLN----DDILWACLAGMATYSRDLATSEEAYAAIEQVD-KVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~-~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      ++..|++++|.+......    ....+-.+|..+++.++++.|+.+|....... ..  +     ..+-....|.++..+
T Consensus       112 L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~--~-----~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          112 EAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF--L-----AGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH--H-----HHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc--c-----HHHHHHHHHHHHHHC
Confidence            488999999999998752    22266778889999999999999886433211 00  0     001235678999999


Q ss_pred             CCHHHHHHHHHHC--CC--HH---HH----HHHHHHhcCHHHHHHHHHh
Q psy11525        163 GNISEAESILLQH--GL--IF---RA----IQVSILTHNWDRALELALR  200 (244)
Q Consensus       163 G~~~eAe~~~l~~--g~--~~---~A----i~m~~~l~~W~~Al~LA~~  200 (244)
                      |++++|...|-+.  |.  |.   .|    -..+..+|+.++|..+-++
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~  233 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEW  233 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999987  33  21   11    2345778888888775543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.50  E-value=1.1  Score=32.21  Aligned_cols=90  Identities=17%  Similarity=-0.018  Sum_probs=60.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHH-
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQH-----GLIF-  179 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~-  179 (244)
                      ....|..+|..+...++++.|..+|.+.-....-..     .........|.++...|++++|...|.++     ..+. 
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  101 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-----DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA  101 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-----HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence            457899999999999999999999886532210000     00112245788999999999999988764     2221 


Q ss_pred             --HHHHHHHHhcCHHHHHHHHHh
Q psy11525        180 --RAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       180 --~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                        ..-.++..++++++|+...++
T Consensus       102 ~~~~a~~~~~~~~~~~A~~~~~~  124 (148)
T 2dba_A          102 LYRRSQALEKLGRLDQAVLDLQR  124 (148)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence              223567788888888766543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=92.32  E-value=3.7  Score=34.99  Aligned_cols=136  Identities=12%  Similarity=0.052  Sum_probs=85.0

Q ss_pred             HHHcCCHHHHHHHHhcc----C------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc--H----
Q psy11525         88 YAASHSWPQALSLCRTL----N------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV--K----  151 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~----~------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~--~----  151 (244)
                      +...|++++|...++..    .      ....|..+|......++++.|...|.+.-..        ......  .    
T Consensus       145 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~--------~~~~~~~~~~~~~  216 (373)
T 1hz4_A          145 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL--------LGNGKYHSDWISN  216 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HTTSCCCHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HhccCcchhHHHH
Confidence            47889999999888763    1      2356888999999999999999888754211        111111  0    


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHCCCHH------------HHHHHHHHhcCHHHHHHHHHhc-------CCc--hhHHH
Q psy11525        152 -AAQQAEMYLLGGNISEAESILLQHGLIF------------RAIQVSILTHNWDRALELALRH-------KTH--IDTVL  209 (244)
Q Consensus       152 -~~~~A~ia~~~G~~~eAe~~~l~~g~~~------------~Ai~m~~~l~~W~~Al~LA~~~-------~~~--~~~vl  209 (244)
                       ....+.++...|++++|...+.++-.+.            ..-..+...+++++|+++.++.       +..  .-.+.
T Consensus       217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~  296 (373)
T 1hz4_A          217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  296 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence             1124456778999999999998764321            2236777889999887766542       211  11234


Q ss_pred             HHHHHHHHHcCC-cccHHHHHhc
Q psy11525        210 YQRKKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       210 ~~r~~yl~~~~~-~e~~~~f~~~  231 (244)
                      ......+...|+ .+....|+++
T Consensus       297 ~~la~~~~~~g~~~~A~~~l~~a  319 (373)
T 1hz4_A          297 LLLNQLYWQAGRKSDAQRVLLDA  319 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHH
Confidence            444454555555 4555555554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=92.28  E-value=0.19  Score=38.19  Aligned_cols=77  Identities=12%  Similarity=0.053  Sum_probs=55.8

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLL  161 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~  161 (244)
                      |...|+|++|.+..+..     .....|..+|......++++.|+.+|.+.=         ++.. ..+.....|.++..
T Consensus        41 y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al---------~~~p~~~~~~~~la~~~~~  111 (150)
T 4ga2_A           41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV---------ELNPTQKDLVLKIAELLCK  111 (150)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------HHCTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH---------HhCCCCHHHHHHHHHHHHH
Confidence            57889999998887764     567889999999888888888888886531         1211 12233567888888


Q ss_pred             cCCHHHHHHHHH
Q psy11525        162 GGNISEAESILL  173 (244)
Q Consensus       162 ~G~~~eAe~~~l  173 (244)
                      .|++++|.+.|+
T Consensus       112 ~~~~~~aa~~~~  123 (150)
T 4ga2_A          112 NDVTDGRAKYWV  123 (150)
T ss_dssp             HCSSSSHHHHHH
T ss_pred             cCChHHHHHHHH
Confidence            888887776664

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=92.25  E-value=1.7  Score=36.44  Aligned_cols=87  Identities=13%  Similarity=-0.026  Sum_probs=61.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCC-----HH-
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGL-----IF-  179 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~-----~~-  179 (244)
                      ....|..+|......++++.|..+|.+.-.        .--....-....|.++...|++++|...|.++-.     +. 
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~   74 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--------RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA   74 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH
Confidence            346788999999999999999999975321        1111112235689999999999999999987522     11 


Q ss_pred             --HHHHHHHHhcCHHHHHHHHHh
Q psy11525        180 --RAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       180 --~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                        .--..|..+++|++|+...++
T Consensus        75 ~~~lg~~~~~~g~~~~A~~~~~~   97 (281)
T 2c2l_A           75 HFFLGQCQLEMESYDEAIANLQR   97 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence              113457788999988765543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=92.23  E-value=2.4  Score=36.19  Aligned_cols=105  Identities=17%  Similarity=0.014  Sum_probs=68.1

Q ss_pred             HHHcCCHHHHHHHHhcc----C--CHH----HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH------
Q psy11525         88 YAASHSWPQALSLCRTL----N--DDI----LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK------  151 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~----~--~~~----lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~------  151 (244)
                      ++..|++++|...++..    .  ...    .+..+|......++++.|+..|.+.-..        .....+.      
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~   95 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQM--------ARQHDVWHYALWS   95 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HHHTTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--------HHhcCcHHHHHHH
Confidence            36789999999987652    1  121    4566777888888888888877653211        1112222      


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHC-------CC---HHHH------HHHHHHhcCHHHHHHHHHh
Q psy11525        152 AAQQAEMYLLGGNISEAESILLQH-------GL---IFRA------IQVSILTHNWDRALELALR  200 (244)
Q Consensus       152 ~~~~A~ia~~~G~~~eAe~~~l~~-------g~---~~~A------i~m~~~l~~W~~Al~LA~~  200 (244)
                      ....|.++...|++++|...|.++       +.   +..+      -..+...|++++|.+..++
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  160 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS  160 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            235788888999999998888654       21   1211      2356778888888776654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=92.05  E-value=1.5  Score=34.21  Aligned_cols=86  Identities=7%  Similarity=-0.089  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC----------------cHHHHHHHHHHHcCCHHHHHH
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP----------------VKAAQQAEMYLLGGNISEAES  170 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~----------------~~~~~~A~ia~~~G~~~eAe~  170 (244)
                      ...|..+|..+...++++.|..+|.+.-..        ....+                ......|.++...|++++|..
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  109 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDF--------FIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAID  109 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            356889999999999999999999864211        00111                223457899999999999999


Q ss_pred             HHHHCC-----CH---HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        171 ILLQHG-----LI---FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       171 ~~l~~g-----~~---~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      .|.++=     .+   ...-..|..++++++|++..++
T Consensus       110 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~  147 (198)
T 2fbn_A          110 HASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK  147 (198)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            987751     11   1123567889999999876554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=92.03  E-value=0.68  Score=41.43  Aligned_cols=45  Identities=13%  Similarity=0.215  Sum_probs=39.0

Q ss_pred             HHcCC-HHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         89 AASHS-WPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        89 l~~~~-~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      ...|+ +++|...++..     +....|..+|......++++-|..+|.+.
T Consensus       142 ~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka  192 (382)
T 2h6f_A          142 KSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI  192 (382)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             HHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            67886 99999988875     57899999999999999999999888754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=92.02  E-value=0.8  Score=41.96  Aligned_cols=79  Identities=14%  Similarity=0.066  Sum_probs=55.1

Q ss_pred             cCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHH-----
Q psy11525         91 SHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKA-----  152 (244)
Q Consensus        91 ~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~-----  152 (244)
                      .|+|++|..+++..             .+-.....||......|+++.|+..|.+.     +...+++-.-..+.     
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-----L~i~~~~lG~~Hp~~a~~l  385 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI-----IKPYSKHYPVYSLNVASMW  385 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCSSCHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-----HHHHHHHcCCCChHHHHHH
Confidence            46788888887653             13466788999999999999999888874     33344443333322     


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Q psy11525        153 AQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      ..+|.++..+|++++|+.+|.+
T Consensus       386 ~nLa~~~~~qg~~~eA~~~~~~  407 (433)
T 3qww_A          386 LKLGRLYMGLENKAAGEKALKK  407 (433)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHH
Confidence            4578888888888888877744

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=92.00  E-value=0.57  Score=39.78  Aligned_cols=107  Identities=10%  Similarity=0.141  Sum_probs=70.2

Q ss_pred             HHHcCCHHHHHHHHhcc-------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC---CcHHH
Q psy11525         88 YAASHSWPQALSLCRTL-------N----DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI---PVKAA  153 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~----~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~---~~~~~  153 (244)
                      |...|++++|....+..       .    ....|..+|..... ++++.|..+|.+.-+.     .......   .....
T Consensus        86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~-----~~~~~~~~~~~~~~~  159 (307)
T 2ifu_A           86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV-----FENEERLRQAAELIG  159 (307)
T ss_dssp             HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH-----HHHTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH-----HHhCCChhHHHHHHH
Confidence            46678888887766542       1    13567888888877 9999999888764321     1111000   11224


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHCCCHH--------------HHHHHHHHhcCHHHHHHHHHh
Q psy11525        154 QQAEMYLLGGNISEAESILLQHGLIF--------------RAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l~~g~~~--------------~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ..|.++..+|++++|...|.++-...              .....+..++++++|+..-++
T Consensus       160 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          160 KASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            57999999999999999988763321              112456667999999877665

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=91.97  E-value=0.6  Score=37.19  Aligned_cols=46  Identities=17%  Similarity=0.218  Sum_probs=40.7

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      |...|++++|....+..     .....|..+|......++++.|..+|.+.
T Consensus        64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  114 (208)
T 3urz_A           64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI  114 (208)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            58899999999988774     56889999999999999999999998864

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=91.89  E-value=0.49  Score=42.02  Aligned_cols=79  Identities=10%  Similarity=0.026  Sum_probs=52.2

Q ss_pred             HHHcCCHHHHHHHHhccC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhh
Q psy11525         88 YAASHSWPQALSLCRTLN---------------------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIK  146 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~---------------------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~  146 (244)
                      +...|+|++|.+..+..-                     ....|..+|...++.++++.|..+|.+.=..+        .
T Consensus       233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p  304 (370)
T 1ihg_A          233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--------P  304 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------T
T ss_pred             HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------c
Confidence            488999999988766531                     24678888888888888888877776432211        0


Q ss_pred             CCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525        147 GIPVKAAQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       147 ~~~~~~~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      ........+|.++..+|++++|.+.|.+
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~  332 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKK  332 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            0111234577888888888887766654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=91.75  E-value=1.4  Score=33.07  Aligned_cols=90  Identities=18%  Similarity=0.070  Sum_probs=62.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC---CC------------cHHHHHHHHHHHcCCHHHHH
Q psy11525        105 NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG---IP------------VKAAQQAEMYLLGGNISEAE  169 (244)
Q Consensus       105 ~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~---~~------------~~~~~~A~ia~~~G~~~eAe  169 (244)
                      .....|...|..+...++++.|..+|.+.=     ..+.....   ..            .....+|.++...|++++|.
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDAL-----TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            345678999999999999999999998732     22222211   11            12245789999999999999


Q ss_pred             HHHHHC-----CCH---HHHHHHHHHhcCHHHHHHHHH
Q psy11525        170 SILLQH-----GLI---FRAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       170 ~~~l~~-----g~~---~~Ai~m~~~l~~W~~Al~LA~  199 (244)
                      ..|.++     +.+   ..--..|..+++|++|++.-+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~  121 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK  121 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHH
Confidence            988765     221   122356788999999976544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=91.37  E-value=2  Score=34.39  Aligned_cols=113  Identities=9%  Similarity=-0.058  Sum_probs=69.6

Q ss_pred             HHHcCCHHHHHHHHhcc-----CC---HHHHHHHHHHHHH------------------cCCHHHHHHHHHHhCC-----h
Q psy11525         88 YAASHSWPQALSLCRTL-----ND---DILWACLAGMATY------------------SRDLATSEEAYAAIEQ-----V  136 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~---~~lW~~LA~~Al~------------------~~~l~~A~~~y~~l~d-----~  136 (244)
                      |...|+|++|....+..     .+   ...|-.+|.....                  .++.+-|..+|.++=+     .
T Consensus        51 ~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~  130 (225)
T 2yhc_A           51 YYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ  130 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCT
T ss_pred             HHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh
Confidence            58899999999988774     12   2256666655443                  4567777777765422     1


Q ss_pred             hHHHHHHHhhCC----CcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCH------HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        137 DKVMYINHIKGI----PVKAAQQAEMYLLGGNISEAESILLQH-----GLI------FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       137 ~~v~~l~~i~~~----~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~------~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ........+..+    .......|.++...|++++|...|.+.     +.+      ..--..|..+|++++|++.-+.
T Consensus       131 ~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~  209 (225)
T 2yhc_A          131 YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKI  209 (225)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            111111111111    112245788899999999999888764     121      2235678899999999876554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=91.34  E-value=4.8  Score=36.12  Aligned_cols=41  Identities=17%  Similarity=0.024  Sum_probs=21.8

Q ss_pred             cCCHHHHHHHHhc---cCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q psy11525         91 SHSWPQALSLCRT---LNDDILWACLAGMATY----SRDLATSEEAYA  131 (244)
Q Consensus        91 ~~~~~~A~~~~~~---~~~~~lW~~LA~~Al~----~~~l~~A~~~y~  131 (244)
                      .+++++|+...+.   ......+..||.....    .++++.|..+|.
T Consensus        56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  103 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYK  103 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            5555555554443   1344555555555555    555555555554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=91.31  E-value=0.82  Score=31.40  Aligned_cols=61  Identities=11%  Similarity=-0.037  Sum_probs=39.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      +...|..+|......++++.|..+|.+.-..        -..........|.++...|++++|.+.|.+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   63 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQ   63 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3467888999999999999998888753211        001111234567777777777777666544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=90.82  E-value=2.3  Score=37.42  Aligned_cols=44  Identities=7%  Similarity=-0.083  Sum_probs=30.0

Q ss_pred             HcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         90 ASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        90 ~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      ..+++++|.+..+..     .....|..+|......++++.|..+|.+.
T Consensus       225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  273 (472)
T 4g1t_A          225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA  273 (472)
T ss_dssp             -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            346667777766542     56778888999999999988888887653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=90.70  E-value=1.9  Score=38.13  Aligned_cols=93  Identities=10%  Similarity=-0.117  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHH----HHHHhhCCC----cHHHHHHHHHHHcCCHHHHHHHHHHCCC--
Q psy11525        108 ILWACLAGMATYSRDLATSEEAYAAIEQVDKVM----YINHIKGIP----VKAAQQAEMYLLGGNISEAESILLQHGL--  177 (244)
Q Consensus       108 ~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~----~l~~i~~~~----~~~~~~A~ia~~~G~~~eAe~~~l~~g~--  177 (244)
                      ..|..+|..+...++++.|..+|.+.-....-.    ...+.....    .....+|.++..+|++++|...|.++=.  
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            469999999999999999999998643211000    000011111    1224588999999999999999876521  


Q ss_pred             HH--H----HHHHHHHhcCHHHHHHHHHh
Q psy11525        178 IF--R----AIQVSILTHNWDRALELALR  200 (244)
Q Consensus       178 ~~--~----Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ++  .    .=..|..++++++|++..++
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~  332 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKK  332 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            11  1    13567889999999765443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=90.60  E-value=2  Score=37.20  Aligned_cols=82  Identities=15%  Similarity=0.067  Sum_probs=60.5

Q ss_pred             HHHcCCHHHHHHHHhccCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhH-HHHHHHhhCCCcHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTLND-------DILWACLAGMATYSRDLATSEEAYAAIEQVDK-VMYINHIKGIPVKAAQQAEMY  159 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~~-------~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~-v~~l~~i~~~~~~~~~~A~ia  159 (244)
                      +++.++|++|....+....       ...+-.||..+...++++.|..+|.+...-.. -..      ..+.....|.++
T Consensus       145 ~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~------~~da~~~~glaL  218 (282)
T 4f3v_A          145 YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEAC------ARAIAWYLAMAR  218 (282)
T ss_dssp             HHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT------HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc------cHHHHHHHHHHH
Confidence            4899999999999977521       45899999999999999999999996521000 000      012235688899


Q ss_pred             HHcCCHHHHHHHHHHC
Q psy11525        160 LLGGNISEAESILLQH  175 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~~  175 (244)
                      ..+|+.++|..+|-+.
T Consensus       219 ~~lGr~deA~~~l~~a  234 (282)
T 4f3v_A          219 RSQGNESAAVALLEWL  234 (282)
T ss_dssp             HHHTCHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            9999999999988653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=90.30  E-value=1.5  Score=28.82  Aligned_cols=60  Identities=15%  Similarity=0.089  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      ...|..+|......++++.|..+|.+.-..        -..........|.++...|++++|...|.+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~   68 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQK   68 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            457888999999999999998888753211        001111234567777777777777766644

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=90.14  E-value=4.3  Score=30.83  Aligned_cols=60  Identities=8%  Similarity=-0.068  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCC
Q psy11525        109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHG  176 (244)
Q Consensus       109 lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g  176 (244)
                      .+..+|...+..++++.|+..|.+.-..+        -+..+-....|.++...|++++|...|.+.-
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~   67 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--------QSRGDVKLAKADCLLETKQFELAQELLATIP   67 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH--------HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence            35677888889999999888887643110        0111223457888888899998888887763

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=90.13  E-value=2.4  Score=38.46  Aligned_cols=108  Identities=9%  Similarity=-0.054  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---------------cHHHHHHHHHHHcCCHHHHHH
Q psy11525        106 DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---------------VKAAQQAEMYLLGGNISEAES  170 (244)
Q Consensus       106 ~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---------------~~~~~~A~ia~~~G~~~eAe~  170 (244)
                      ....|..+|......++++.|..+|.+.=.        ......               .....+|.++..+|++++|..
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--------~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  338 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--------WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE  338 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            356799999999999999999999986321        111111               123468999999999999999


Q ss_pred             HHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC
Q psy11525        171 ILLQH-----GLIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK  221 (244)
Q Consensus       171 ~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~  221 (244)
                      .|.++     +.+.   ..=..|..+++|++|+...++   .++.-..........+...++
T Consensus       339 ~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~  400 (457)
T 1kt0_A          339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE  400 (457)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99874     2221   123567889999999876544   444433344444444444333

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=89.55  E-value=1  Score=30.63  Aligned_cols=48  Identities=8%  Similarity=0.027  Sum_probs=40.4

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CCHH-HHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         86 HSYAASHSWPQALSLCRTL-----NDDI-LWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~~~-lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      ..++..|+|++|.+.++..     .... .|..+|......++++.|..+|.+.
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4568899999999988774     4566 8999999999999999999988763

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=89.51  E-value=1.6  Score=36.47  Aligned_cols=96  Identities=10%  Similarity=-0.023  Sum_probs=64.8

Q ss_pred             HHHcCCHHHHHHHHhcc--------CCH----HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHH
Q psy11525         88 YAASHSWPQALSLCRTL--------NDD----ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKA  152 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~--------~~~----~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~  152 (244)
                      |...|++++|.......        ..+    ..+..+|......++++.|..+|.+.-+.     ........   ...
T Consensus       165 y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~-----~~~~~~~~~~~~~~  239 (293)
T 2qfc_A          165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI-----SCRINSMALIGQLY  239 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTBCSSHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH-----HHhcCcHHHHHHHH
Confidence            47899999988877653        121    58889999999999999999998864322     12221111   123


Q ss_pred             HHHHHHHHHcCCHHHH-HHHHHHCCCHHHHHHHHHHhcCHHHH
Q psy11525        153 AQQAEMYLLGGNISEA-ESILLQHGLIFRAIQVSILTHNWDRA  194 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eA-e~~~l~~g~~~~Ai~m~~~l~~W~~A  194 (244)
                      ...|.++..+|++++| ...|      .+|+.++...+++.-+
T Consensus       240 ~~lg~~y~~~g~~~~Ai~~~~------~~Al~~~~~~~~~~~~  276 (293)
T 2qfc_A          240 YQRGECLRKLEYEEAEIEDAY------KKASFFFDILEMHAYK  276 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHH------HHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHH------HHHHHHHHHhCcHhhH
Confidence            4578888888888888 5544      3566666666665553

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=89.20  E-value=0.89  Score=31.71  Aligned_cols=45  Identities=16%  Similarity=0.087  Sum_probs=39.8

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAA  132 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~  132 (244)
                      |...|++++|....+..     .....|..+|......++++.|..+|.+
T Consensus        17 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~   66 (100)
T 3ma5_A           17 HLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ   66 (100)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            58899999999988774     4577999999999999999999999886

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=89.20  E-value=0.86  Score=39.61  Aligned_cols=80  Identities=9%  Similarity=-0.010  Sum_probs=54.9

Q ss_pred             HHcCCHHHHHHHHhcc----CCH------------------HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhh
Q psy11525         89 AASHSWPQALSLCRTL----NDD------------------ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIK  146 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~----~~~------------------~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~  146 (244)
                      ...|+|++|....+..    ...                  ..|..+|...+..++++.|..+|.+.=        + +.
T Consensus       190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al--------~-~~  260 (338)
T 2if4_A          190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL--------T-EE  260 (338)
T ss_dssp             CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH--------H-HC
T ss_pred             HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------H-hC
Confidence            7789999998866652    222                  267788888888888887777776421        1 11


Q ss_pred             C-CCcHHHHHHHHHHHcCCHHHHHHHHHHCCC
Q psy11525        147 G-IPVKAAQQAEMYLLGGNISEAESILLQHGL  177 (244)
Q Consensus       147 ~-~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~  177 (244)
                      . ...-...+|.++..+|++++|...|.++=.
T Consensus       261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~  292 (338)
T 2if4_A          261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQK  292 (338)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1 112235688899999999999998887743

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=88.82  E-value=1.4  Score=29.05  Aligned_cols=47  Identities=17%  Similarity=0.255  Sum_probs=40.0

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      .+...|++++|....+..     .....|..+|......++++.|..+|.+.
T Consensus        18 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A           18 AYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            358899999999988764     56788999999999999999999888764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=88.68  E-value=7.6  Score=35.18  Aligned_cols=43  Identities=9%  Similarity=0.149  Sum_probs=34.8

Q ss_pred             cCCHH-------HHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         91 SHSWP-------QALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        91 ~~~~~-------~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      .|+++       +|..+.+..      ....+|..+|......++++.|+.+|.+.
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            58886       777766553      35889999999999999999999999863

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.95  E-value=5.4  Score=34.47  Aligned_cols=107  Identities=7%  Similarity=-0.044  Sum_probs=68.4

Q ss_pred             HHHcCCHHHHHHHHhcc------CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc---HHH
Q psy11525         88 YAASHSWPQALSLCRTL------ND-----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---KAA  153 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~------~~-----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---~~~  153 (244)
                      |...|+|++|.......      ..     ......++......++++.|...|...-     ...........   ...
T Consensus        65 y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~~~~~~  139 (434)
T 4b4t_Q           65 YVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSI-----EFAKREKRVFLKHSLSI  139 (434)
T ss_dssp             HHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHH-----HHHHHSSCCSSHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HHHHHhCccHHHHHHHH
Confidence            58899999999877654      11     2234444544445567777777766532     22222222221   235


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHC--------CCHH------HHHHHHHHhcCHHHHHHHHH
Q psy11525        154 QQAEMYLLGGNISEAESILLQH--------GLIF------RAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       154 ~~A~ia~~~G~~~eAe~~~l~~--------g~~~------~Ai~m~~~l~~W~~Al~LA~  199 (244)
                      ..|.+....|++++|..++.+.        ..+.      .-.++|..+++|++|..+-+
T Consensus       140 ~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  199 (434)
T 4b4t_Q          140 KLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT  199 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            6899999999999999988753        1222      22678999999999877643

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=87.91  E-value=1.3  Score=30.24  Aligned_cols=47  Identities=9%  Similarity=-0.015  Sum_probs=39.8

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      .+...|+|++|....+..     .....|..+|......++++-|..+|.+.
T Consensus        13 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   64 (111)
T 2l6j_A           13 SLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQG   64 (111)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            357899999999988764     56889999999999999999998888763

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=87.77  E-value=13  Score=33.15  Aligned_cols=43  Identities=16%  Similarity=0.030  Sum_probs=35.6

Q ss_pred             cCCHHHHHHHHhcc---CCHHHHHHHHHHHHH----cCCHHHHHHHHHHh
Q psy11525         91 SHSWPQALSLCRTL---NDDILWACLAGMATY----SRDLATSEEAYAAI  133 (244)
Q Consensus        91 ~~~~~~A~~~~~~~---~~~~lW~~LA~~Al~----~~~l~~A~~~y~~l  133 (244)
                      .+++++|.+..+..   .....+..||.....    .++++.|...|.+.
T Consensus        92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a  141 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLA  141 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            78999998877653   577888899999888    78999999999764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=87.37  E-value=2.9  Score=38.87  Aligned_cols=83  Identities=6%  Similarity=-0.051  Sum_probs=59.0

Q ss_pred             HHHcCCHHHHHHHHhcc-------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH---
Q psy11525         88 YAASHSWPQALSLCRTL-------------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK---  151 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~---  151 (244)
                      |...|+|++|..+++..             .+-.....||......|+++.|+..|.+.-     .-.+.+..-+.+   
T Consensus       361 y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al-----~i~~~~lG~~Hp~~~  435 (490)
T 3n71_A          361 LSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY-----AILLVTHGPSHPITK  435 (490)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCTTSHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHHhCCCChHHH
Confidence            57899999999988763             245678889999999999999999887632     223333222221   


Q ss_pred             --HHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        152 --AAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       152 --~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                        ....++..+.+|++++||.+|.++
T Consensus       436 ~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          436 DLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              234566777778888888888554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=87.34  E-value=1.9  Score=40.01  Aligned_cols=100  Identities=12%  Similarity=0.112  Sum_probs=69.1

Q ss_pred             CHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHH--HHHHHHHHcCC
Q psy11525         93 SWPQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAA--QQAEMYLLGGN  164 (244)
Q Consensus        93 ~~~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~--~~A~ia~~~G~  164 (244)
                      ++++|+++-+.+      .+...|..|-..+.+.++++.|.+.|..+...         --.++...  -+-..+...|+
T Consensus        85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---------g~~Pd~~tyn~lI~~~~~~g~  155 (501)
T 4g26_A           85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAF---------GIQPRLRSYGPALFGFCRKGD  155 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------TCCCCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCccceehHHHHHHHHCCC
Confidence            467888876654      46778888888888888888888777665321         01133222  22344567899


Q ss_pred             HHHHHHHHHHC---CC------HHHHHHHHHHhcCHHHHHHHHHhc
Q psy11525        165 ISEAESILLQH---GL------IFRAIQVSILTHNWDRALELALRH  201 (244)
Q Consensus       165 ~~eAe~~~l~~---g~------~~~Ai~m~~~l~~W~~Al~LA~~~  201 (244)
                      .++|.++|-+.   |-      +...|..|.+.|++++|+++-++.
T Consensus       156 ~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          156 ADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            99999998654   22      344588999999999999887764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=86.88  E-value=5.6  Score=36.10  Aligned_cols=131  Identities=11%  Similarity=0.054  Sum_probs=80.1

Q ss_pred             HHcCCHHHHHHHHhcc-----CC-HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHH-HHH
Q psy11525         89 AASHSWPQALSLCRTL-----ND-DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEM-YLL  161 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~-~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~i-a~~  161 (244)
                      ...|++++|..+.+..     .+ ...|..++......++++.|+.+|.+.-....        .........|.+ +..
T Consensus       332 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--------~~~~~~~~~a~~~~~~  403 (530)
T 2ooe_A          332 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--------TRHHVYVTAALMEYYC  403 (530)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--------CCTHHHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--------CchHHHHHHHHHHHHH
Confidence            6689999999887763     22 35899999999999999999998885422100        001111122222 224


Q ss_pred             cCCHHHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHh---cC---Cc-hhHHHHHHHHHHHHcCCcccHH
Q psy11525        162 GGNISEAESILLQH-----GLIF---RAIQVSILTHNWDRALELALR---HK---TH-IDTVLYQRKKYLDNLEKIETNE  226 (244)
Q Consensus       162 ~G~~~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~---~~---~~-~~~vl~~r~~yl~~~~~~e~~~  226 (244)
                      .|++++|.++|.++     +.++   .-+++...+|+.++|..+-++   .+   +. ...+.....++....|..++..
T Consensus       404 ~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~  483 (530)
T 2ooe_A          404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL  483 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHH
T ss_pred             cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            78888888888754     2222   224556677888887666544   22   11 2334545566667777766555


Q ss_pred             H
Q psy11525        227 K  227 (244)
Q Consensus       227 ~  227 (244)
                      .
T Consensus       484 ~  484 (530)
T 2ooe_A          484 K  484 (530)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=86.77  E-value=1.7  Score=30.51  Aligned_cols=46  Identities=22%  Similarity=0.296  Sum_probs=39.8

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      |...|++++|...++..     .....|..+|......++++.|..+|.+.
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A           29 YAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            58899999999988774     46789999999999999999999888754

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=85.85  E-value=1.5  Score=29.64  Aligned_cols=47  Identities=17%  Similarity=0.205  Sum_probs=40.4

Q ss_pred             HHHcCCHHHHHHHHhcc-----C--CHHHHHHHHHHHHHc-CCHHHHHHHHHHhC
Q psy11525         88 YAASHSWPQALSLCRTL-----N--DDILWACLAGMATYS-RDLATSEEAYAAIE  134 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~--~~~lW~~LA~~Al~~-~~l~~A~~~y~~l~  134 (244)
                      +...|++++|....+..     .  ....|..+|...... ++++.|..+|.++-
T Consensus        50 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~  104 (112)
T 2kck_A           50 LYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAK  104 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHG
T ss_pred             HHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            48899999999887764     4  688999999999999 99999999988653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=84.79  E-value=1.1  Score=35.54  Aligned_cols=102  Identities=13%  Similarity=0.041  Sum_probs=56.7

Q ss_pred             cCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH----HHHHHHHHHH
Q psy11525         91 SHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK----AAQQAEMYLL  161 (244)
Q Consensus        91 ~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~----~~~~A~ia~~  161 (244)
                      .+.|++|.+.++..     .....|..+|..-+..++++-+..+.....+  -+..+++...+...    .-..|.++..
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~e--Ai~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQE--AITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHH--HHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            45677777777664     5788999999977666655422222111111  12333333333221    1235666665


Q ss_pred             c-----------CCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHh
Q psy11525        162 G-----------GNISEAESILLQHGLIFRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       162 ~-----------G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      +           |++++|.+.|.      +|+++.-+...+.+|++++.+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~------kAl~l~P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQ------QAVDEQPDNTHYLKSLEMTAK  136 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHH------HHHHHCTTCHHHHHHHHHHHT
T ss_pred             hcccCcchhhhhccHHHHHHHHH------HHHHhCCCCHHHHHHHHHHHh
Confidence            5           47777777664      455555555566667666655

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=84.67  E-value=22  Score=32.01  Aligned_cols=48  Identities=10%  Similarity=0.019  Sum_probs=35.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHC----------CCHHHHH------HHHHHhcCHHHHHHHHHh
Q psy11525        153 AQQAEMYLLGGNISEAESILLQH----------GLIFRAI------QVSILTHNWDRALELALR  200 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~----------g~~~~Ai------~m~~~l~~W~~Al~LA~~  200 (244)
                      ...|.++..+|++++|+.+|.++          .+|+-|.      ..|...|+|++|+.+-++
T Consensus       333 ~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~  396 (429)
T 3qwp_A          333 DCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL  396 (429)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            34788888999999999998875          3444443      346778888888776544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=84.20  E-value=16  Score=30.03  Aligned_cols=80  Identities=13%  Similarity=0.032  Sum_probs=51.4

Q ss_pred             HHHcCCHHHHHHHHhcc--------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc---HH
Q psy11525         88 YAASHSWPQALSLCRTL--------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---KA  152 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~--------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---~~  152 (244)
                      |...|++++|....+..        ..    ...|..+|......++++.|...|.+.     +...........   ..
T Consensus       165 y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a-----l~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          165 YAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA-----IEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHTTBCTTHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHcCcHHHHHHHH
Confidence            58889999998877663        11    246778898888999998888887753     222222222221   23


Q ss_pred             HHHHHHHHHcC-CHHHHHHHH
Q psy11525        153 AQQAEMYLLGG-NISEAESIL  172 (244)
Q Consensus       153 ~~~A~ia~~~G-~~~eAe~~~  172 (244)
                      ...|.++..+| .+++|.+.|
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~  260 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAY  260 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHH
Confidence            45677777777 356666555

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=83.97  E-value=1.5  Score=40.08  Aligned_cols=78  Identities=9%  Similarity=-0.094  Sum_probs=53.0

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHH--HH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEM--YL  160 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~i--a~  160 (244)
                      |...|++++|...++..     .....|..+|......++++.|+.+|.+.-        +.--...+.....+.+  +.
T Consensus        50 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al--------~~~p~~~~~~~~l~~~~~~~  121 (477)
T 1wao_1           50 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVV--------KVKPHDKDAKMKYQECNKIV  121 (477)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HHSTTCTTHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHH
Confidence            58999999999988774     567899999999999999999999987632        1111112222334444  66


Q ss_pred             HcCCHHHHHHHHH
Q psy11525        161 LGGNISEAESILL  173 (244)
Q Consensus       161 ~~G~~~eAe~~~l  173 (244)
                      ..|++++|.+.|.
T Consensus       122 ~~g~~~~A~~~~~  134 (477)
T 1wao_1          122 KQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHCCC-----
T ss_pred             HHHHHHHHhcccc
Confidence            6788888888887

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=83.46  E-value=3  Score=29.50  Aligned_cols=46  Identities=13%  Similarity=0.038  Sum_probs=40.0

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      |...|++++|....+..     .....|..+|......++++.|..+|.+.
T Consensus        37 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           37 FRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            48899999999988774     56889999999999999999999888753

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=83.15  E-value=3.7  Score=37.49  Aligned_cols=34  Identities=26%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             CeEEEEEcCCccccCcccceeeeEeeccCCCCCCC-eEEeEeCCEEEEEe
Q psy11525         20 SALCVWFFPAVVFADQGLLRKTVLLKDIGEFGKSP-SIVSFVKNHLTIRR   68 (244)
Q Consensus        20 ~~l~vw~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~v~f~g~~v~~~~   68 (244)
                      ..+.+-+||..++++               .+=.| ..+.|.|+.+.++.
T Consensus       192 ~~~g~gl~p~~s~~N---------------HsC~PN~~~~~~~~~~~~~a  226 (433)
T 3qww_A          192 SHLGSAIFPDVALMN---------------HSCCPNVIVTYKGTLAEVRA  226 (433)
T ss_dssp             CEEEEEECTTGGGSE---------------ECSSCSEEEEEETTEEEEEE
T ss_pred             cceeEEecccccccC---------------CCCCCCceEEEcCCEEEEEe
Confidence            345567788877542               22222 23467888777765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=83.13  E-value=6  Score=34.62  Aligned_cols=45  Identities=13%  Similarity=0.036  Sum_probs=34.7

Q ss_pred             HHcCCHHHHHHHHhcc--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         89 AASHSWPQALSLCRTL--------------NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~--------------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      ...|++++|.+..+..              ..-..|..+|......++++.|+..|.+.
T Consensus        62 ~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka  120 (472)
T 4g1t_A           62 HLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKV  120 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            5689999998766431              12457899999999999999998888753

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=83.11  E-value=5.4  Score=36.93  Aligned_cols=86  Identities=10%  Similarity=-0.010  Sum_probs=62.5

Q ss_pred             cHHHHHHHHHcCCHHHHHHHHhcc------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHH--
Q psy11525         81 YISVLHSYAASHSWPQALSLCRTL------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKA--  152 (244)
Q Consensus        81 ~~~~l~~~l~~~~~~~A~~~~~~~------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~--  152 (244)
                      |...+..|...|++++|.++.+.+      .+...|..|-..+.+.++++.|.+.|..+.+-         --.++..  
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---------G~~Pd~~ty  178 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES---------EVVPEEPEL  178 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------TCCCCHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc---------CCCCCHHHH
Confidence            556667789999999999998876      46788888888888888888888887765311         1123322  


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        153 AQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      ..+-..+...|+.++|.++|.+.
T Consensus       179 ~~Li~~~~~~g~~d~A~~ll~~M  201 (501)
T 4g26_A          179 AALLKVSMDTKNADKVYKTLQRL  201 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCCHHHHHHHHHHH
Confidence            23445666788999998888764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=82.05  E-value=15  Score=28.85  Aligned_cols=134  Identities=11%  Similarity=0.000  Sum_probs=77.1

Q ss_pred             HHHcCCHHHHHHHHhcc---CCHHHHHHHHHHHHHcC----CHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL---NDDILWACLAGMATYSR----DLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYL  160 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~---~~~~lW~~LA~~Al~~~----~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~  160 (244)
                      |...+++++|.+..+..   .+...+..||..... +    +++.|.+.|.+.-+.          ..+.-...+|.++.
T Consensus        28 ~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~   96 (212)
T 3rjv_A           28 WVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLV   96 (212)
T ss_dssp             HHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHT
T ss_pred             HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHH
Confidence            35678888888766553   567778888888776 5    788888777764111          11111234566665


Q ss_pred             H----cCCHHHHHHHHHHCCCHH------HH----HHHHHH----hcCHHHHHHHHHhc---CCchhHHHHHHHHHHHHc
Q psy11525        161 L----GGNISEAESILLQHGLIF------RA----IQVSIL----THNWDRALELALRH---KTHIDTVLYQRKKYLDNL  219 (244)
Q Consensus       161 ~----~G~~~eAe~~~l~~g~~~------~A----i~m~~~----l~~W~~Al~LA~~~---~~~~~~vl~~r~~yl~~~  219 (244)
                      .    .+++++|.+.|.++-...      .|    =.+|..    ..++++|+..-++-   +.+..-...+-.-|+...
T Consensus        97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~  176 (212)
T 3rjv_A           97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMFQQGE  176 (212)
T ss_dssp             CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCB
T ss_pred             cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCC
Confidence            5    678888888888763322      22    234555    56788887765543   112222223333444433


Q ss_pred             C------CcccHHHHHhcc
Q psy11525        220 E------KIETNEKFLRLQ  232 (244)
Q Consensus       220 ~------~~e~~~~f~~~~  232 (244)
                      |      ..++...|+++.
T Consensus       177 gg~~~~d~~~A~~~~~~A~  195 (212)
T 3rjv_A          177 KGFIEPNKQKALHWLNVSC  195 (212)
T ss_dssp             TTTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHH
Confidence            3      245555566553

>2hbp_A Cytoskeleton assembly control protein SLA1; SHD1, NPFX(1,2)D, endocytosis, protein binding; NMR {Saccharomyces cerevisiae}

Probab=81.73  E-value=2.3  Score=28.92  Aligned_cols=41  Identities=12%  Similarity=0.237  Sum_probs=31.9

Q ss_pred             CCCCCCeEEeEeCCEEEEEecCCcEEEeecCccHHHHHHHH
Q psy11525         49 EFGKSPSIVSFVKNHLTIRRYDGTVINYPISPYISVLHSYA   89 (244)
Q Consensus        49 ~~~~~~~~v~f~g~~v~~~~~~G~~~~~~~~p~~~~l~~~l   89 (244)
                      .|....+++++.+|+|.++..||..+.+.+..++..=.+|+
T Consensus        14 ~F~VeA~flg~~dgki~LhK~nGv~I~VP~~klS~~D~~yv   54 (68)
T 2hbp_A           14 TFKVDAEFIGCAKGKIHLHKANGVKIAVAADKLSNEDLAYV   54 (68)
T ss_dssp             CCEEEEEEEEEETTEEEEECTTSCEEEEETTSBCHHHHHHH
T ss_pred             CeEEEEEEEEEeCCEEEEEecCCcEEEeEhHHcCHHHHHHH
Confidence            45556678899999999999999999988776665544453

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.39  E-value=7.7  Score=33.47  Aligned_cols=107  Identities=6%  Similarity=-0.003  Sum_probs=67.2

Q ss_pred             HHHHHcCCHHHHHHHHhcc----C------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL----N------------------DDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYIN  143 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~----~------------------~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~  143 (244)
                      .+++..|++++|.+.....    .                  .+.....||......++++-|...|..+-.        
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~--------   83 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE--------   83 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH--------
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence            4568999999999987654    0                  012356777777788888877777765421        


Q ss_pred             HhhCCCcH------HHHHHHHHHHcCCHHHHHHHHHHCCCHH--------------HHHHHHHHhcCHHHHHHHHHh
Q psy11525        144 HIKGIPVK------AAQQAEMYLLGGNISEAESILLQHGLIF--------------RAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       144 ~i~~~~~~------~~~~A~ia~~~G~~~eAe~~~l~~g~~~--------------~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ......+.      ....+.+....|++++|..++.++-.+.              .--.+|.+.|++++|+.+..+
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  160 (434)
T 4b4t_Q           84 YMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND  160 (434)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence            11122221      1224555556788888888776652221              225678888899988877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	244
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.17
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	97.13
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.99
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	96.87
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.8
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	96.71
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	96.56
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	96.21
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.65
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	95.04
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	94.5
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	93.97
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	93.94
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	93.89
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	93.87
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	93.65
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	93.44
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	93.23
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	92.59
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	92.58
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	91.77
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	90.01
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	89.86
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	89.58
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	88.86
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	88.63
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	88.63
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	88.13
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	87.15
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	85.6
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	85.55
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	83.19
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	82.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	82.42
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	82.31
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	81.54
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	81.27

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0044  Score=48.30  Aligned_cols=102  Identities=20%  Similarity=0.200  Sum_probs=77.4

Q ss_pred             HHHHcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCC
Q psy11525         87 SYAASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGN  164 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~  164 (244)
                      .+.+.|+|+.|.+.-..+  .+...|-.+|..-...++++.|+.+|.+.        |+.=.+.......+|.++..+|+
T Consensus        14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kA--------l~ldp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRS--------INRDKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------HHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHH--------HHHhhhhhhhHHHHHHHHHhhcc
Confidence            358999999999988876  45788999999999999999999999874        11111222234568999999999


Q ss_pred             HHHHHHHHHHCCC-------------------------HHHHHHHHHHhcCHHHHHHH
Q psy11525        165 ISEAESILLQHGL-------------------------IFRAIQVSILTHNWDRALEL  197 (244)
Q Consensus       165 ~~eAe~~~l~~g~-------------------------~~~Ai~m~~~l~~W~~Al~L  197 (244)
                      +++|.+.|.++=.                         ...| .++..+++|++|++.
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a-~~~~~~~~~~~A~~~  142 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIA-FMYAKKEEWKKAEEQ  142 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHH-HHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHH-HHHHHCCCHHHHHHH
Confidence            9999998877510                         1223 357889999998764

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.0032  Score=51.40  Aligned_cols=144  Identities=14%  Similarity=0.042  Sum_probs=77.5

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh---------------------CChhH-HH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI---------------------EQVDK-VM  140 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l---------------------~d~~~-v~  140 (244)
                      +...|++++|.......     .....|..+|......++++.|..+|.+.                     |++.. +.
T Consensus       179 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  258 (388)
T d1w3ba_         179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID  258 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHH
Confidence            35566666666655442     34456666666666666666665554432                     11111 11


Q ss_pred             HHHHhhCC-C---cHHHHHHHHHHHcCCHHHHHHHHHHCCC--------HHHHHHHHHHhcCHHHHHHHHHh---cCCch
Q psy11525        141 YINHIKGI-P---VKAAQQAEMYLLGGNISEAESILLQHGL--------IFRAIQVSILTHNWDRALELALR---HKTHI  205 (244)
Q Consensus       141 ~l~~i~~~-~---~~~~~~A~ia~~~G~~~eAe~~~l~~g~--------~~~Ai~m~~~l~~W~~Al~LA~~---~~~~~  205 (244)
                      .++++.++ +   +.....|.++...|++++|.+.|.++-.        .......+..++++++|++..++   ..|..
T Consensus       259 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~  338 (388)
T d1w3ba_         259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF  338 (388)
T ss_dssp             HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            12222221 1   1123467777777888887777654311        11223456777888888877654   33444


Q ss_pred             hHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525        206 DTVLYQRKKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       206 ~~vl~~r~~yl~~~~~-~e~~~~f~~~  231 (244)
                      ...+.....-+...|+ .++.+.|+++
T Consensus       339 ~~~~~~la~~~~~~g~~~~A~~~~~~a  365 (388)
T d1w3ba_         339 AAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4455555555556665 5667777665

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.014  Score=47.43  Aligned_cols=78  Identities=15%  Similarity=0.054  Sum_probs=47.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHC-----CCHH---HHHHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcCC-c
Q psy11525        155 QAEMYLLGGNISEAESILLQH-----GLIF---RAIQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLEK-I  222 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~-----g~~~---~Ai~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~~-~  222 (244)
                      +|.++...|++++|...|.++     +.+.   ..-..+..++++++|++..++   .++.....+.....-+...|+ .
T Consensus       178 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  257 (323)
T d1fcha_         178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR  257 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             hHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHH
Confidence            567777888888888887764     1111   113457788888888876544   344433344444444444554 6


Q ss_pred             ccHHHHHhcc
Q psy11525        223 ETNEKFLRLQ  232 (244)
Q Consensus       223 e~~~~f~~~~  232 (244)
                      ++.+.|+++-
T Consensus       258 ~A~~~~~~al  267 (323)
T d1fcha_         258 EAVEHFLEAL  267 (323)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.87  E-value=0.0049  Score=46.83  Aligned_cols=81  Identities=10%  Similarity=-0.057  Sum_probs=63.7

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLL  161 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~  161 (244)
                      .|...|+|++|.......     .....|..+|...+..++++-|..+|.+.=..+        -...+.....|.++..
T Consensus        13 ~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--------p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1          13 RLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------TTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--------CCcHHHHHHHHHHHHH
Confidence            369999999999988764     678999999999999999999999887643211        0011124668999999


Q ss_pred             cCCHHHHHHHHHHC
Q psy11525        162 GGNISEAESILLQH  175 (244)
Q Consensus       162 ~G~~~eAe~~~l~~  175 (244)
                      +|++++|...|.++
T Consensus        85 l~~~~~A~~~~~~a   98 (201)
T d2c2la1          85 MESYDEAIANLQRA   98 (201)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999998653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0056  Score=43.65  Aligned_cols=81  Identities=11%  Similarity=0.064  Sum_probs=58.7

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMY  159 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia  159 (244)
                      ..++..|+|++|+......     .....|..+|...+..++++.|...|.+.        + ++.. ........|.++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a--------l-~~~p~~~~~~~~~g~~~   81 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT--------V-DLKPDWGKGYSRKAAAL   81 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH--------H-HHCTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhH--------H-HhccchhhHHHHHHHHH
Confidence            4568899999999888774     56788999998888888888887777642        1 1111 122345678888


Q ss_pred             HHcCCHHHHHHHHHHC
Q psy11525        160 LLGGNISEAESILLQH  175 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~~  175 (244)
                      ..+|++++|...|.++
T Consensus        82 ~~~~~~~~A~~~~~~a   97 (117)
T d1elwa_          82 EFLNRFEEAKRTYEEG   97 (117)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHH
Confidence            8888888888777654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.71  E-value=0.056  Score=46.08  Aligned_cols=125  Identities=12%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             CccHHHHHHHHHcCCHHHHHHHHhccCCHHHHHHHHHHHHHcCCHHHHHHH-----------------HHHhCChhH-HH
Q psy11525         79 SPYISVLHSYAASHSWPQALSLCRTLNDDILWACLAGMATYSRDLATSEEA-----------------YAAIEQVDK-VM  140 (244)
Q Consensus        79 ~p~~~~l~~~l~~~~~~~A~~~~~~~~~~~lW~~LA~~Al~~~~l~~A~~~-----------------y~~l~d~~~-v~  140 (244)
                      .-+...+.-++..++|+.|+++++..+....|..+...+++..+...|..|                 |-..|.... +.
T Consensus        41 ~d~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~  120 (336)
T d1b89a_          41 SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT  120 (336)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCHHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHH
Confidence            345667777799999999999999999999999999999999988776543                 222222221 23


Q ss_pred             HHHHhhCCCc-----------------HHHHHHHHHHHcCC--HHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhc
Q psy11525        141 YINHIKGIPV-----------------KAAQQAEMYLLGGN--ISEAESILLQHGLIFRAIQVSILTHNWDRALELALRH  201 (244)
Q Consensus       141 ~l~~i~~~~~-----------------~~~~~A~ia~~~G~--~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~  201 (244)
                      +++.....+.                 +...+-++-...++  ...|-+...+.+.+.+++-+|...++|++|+.+.-.|
T Consensus       121 ~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~  200 (336)
T d1b89a_         121 MLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH  200 (336)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHcCCccchHHHHHHHHHHHHhChHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc
Confidence            4444433321                 11123334444443  4777888888888888888888899998888888887


Q ss_pred             CC
Q psy11525        202 KT  203 (244)
Q Consensus       202 ~~  203 (244)
                      .+
T Consensus       201 ~~  202 (336)
T d1b89a_         201 PT  202 (336)
T ss_dssp             TT
T ss_pred             ch
Confidence            54

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.023  Score=46.00  Aligned_cols=68  Identities=16%  Similarity=0.043  Sum_probs=44.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCC--CHH--HH----HHHHHHhcCHHHHHHHHHh---cCCchhHHHHHHHHHHHHcC
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHG--LIF--RA----IQVSILTHNWDRALELALR---HKTHIDTVLYQRKKYLDNLE  220 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g--~~~--~A----i~m~~~l~~W~~Al~LA~~---~~~~~~~vl~~r~~yl~~~~  220 (244)
                      ...|.++...|++++|.+.|.++=  .|+  .+    -..|..+|++++|++.-++   .+|...+.+.....-+.+.|
T Consensus       309 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         309 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            557889999999999999998752  121  11    3577889999999876653   44543444444444444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0084  Score=44.70  Aligned_cols=79  Identities=9%  Similarity=0.003  Sum_probs=59.9

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHH
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLL  161 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~  161 (244)
                      |+..|+|++|...-...     .....|..+|...+..++++.|..+|.+.        | ++... ..-...+|.++..
T Consensus        20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ka--------l-~~~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRA--------I-ELDKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------H-HHCTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHH--------H-HHcccchHHHHHHHHHHHH
Confidence            68899999999887764     57889999999999999999998888764        1 11111 1223567888999


Q ss_pred             cCCHHHHHHHHHHC
Q psy11525        162 GGNISEAESILLQH  175 (244)
Q Consensus       162 ~G~~~eAe~~~l~~  175 (244)
                      .|++++|...|.++
T Consensus        91 ~g~~~eA~~~~~~a  104 (159)
T d1a17a_          91 LGKFRAALRDYETV  104 (159)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            99999988877665

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.21  E-value=0.014  Score=41.18  Aligned_cols=80  Identities=13%  Similarity=-0.049  Sum_probs=61.5

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHH
Q psy11525         86 HSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMY  159 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia  159 (244)
                      ..+...|++++|....+..     .....|..+|......++++.|+.+|.+.        + ++... .+-....|.++
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a--------l-~~~p~~~~a~~~la~~y   94 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHA--------R-MLDPKDIAVHAALAVSH   94 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------H-HHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccc--------c-ccccccccchHHHHHHH
Confidence            4578899999999988875     57899999999999999999999999763        1 11111 12235578888


Q ss_pred             HHcCCHHHHHHHHHH
Q psy11525        160 LLGGNISEAESILLQ  174 (244)
Q Consensus       160 ~~~G~~~eAe~~~l~  174 (244)
                      ...|++++|.+.|-+
T Consensus        95 ~~~g~~~~A~~~l~~  109 (112)
T d1hxia_          95 TNEHNANAALASLRA  109 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHH
Confidence            888888888887754

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.65  E-value=0.047  Score=42.55  Aligned_cols=80  Identities=14%  Similarity=0.076  Sum_probs=62.8

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      |...|++++|....+..     +....|..+|......++++.|..+|.+.=..        -....+....+|.++...
T Consensus        47 y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~  118 (259)
T d1xnfa_          47 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--------DPTYNYAHLNRGIALYYG  118 (259)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCTHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--------HhhhhhhHHHHHHHHHHH
Confidence            58899999999977764     57889999999999999999999999763211        112233445688899999


Q ss_pred             CCHHHHHHHHHHC
Q psy11525        163 GNISEAESILLQH  175 (244)
Q Consensus       163 G~~~eAe~~~l~~  175 (244)
                      |++++|.+.|.++
T Consensus       119 g~~~~A~~~~~~a  131 (259)
T d1xnfa_         119 GRDKLAQDDLLAF  131 (259)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            9999999988765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.06  Score=43.39  Aligned_cols=25  Identities=8%  Similarity=0.097  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYA  131 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~  131 (244)
                      ...|..+|......++++.|..+|.
T Consensus       172 ~~~~~~l~~~~~~~~~~~~A~~~~~  196 (323)
T d1fcha_         172 PDVQCGLGVLFNLSGEYDKAVDCFT  196 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHhhhhcccc
Confidence            3445555555555555555554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.50  E-value=0.21  Score=40.27  Aligned_cols=108  Identities=8%  Similarity=-0.009  Sum_probs=68.8

Q ss_pred             HHHcCCHHHHHHHHhcc-------CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc---HHH
Q psy11525         88 YAASHSWPQALSLCRTL-------ND----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---KAA  153 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-------~~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---~~~  153 (244)
                      |-..++|++|.......       ..    ...|..+|......++++.|..+|.+.-+     ..........   ...
T Consensus        47 y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ-----IFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHTTCHHHHHHHHH
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH-----HhhhcccchhHHHHHH
Confidence            46788888888765542       22    25677788887788888888888775332     2222211100   123


Q ss_pred             HHHHHHHH-cCCHHHHHHHHHHCC-------CH-------HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        154 QQAEMYLL-GGNISEAESILLQHG-------LI-------FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       154 ~~A~ia~~-~G~~~eAe~~~l~~g-------~~-------~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ..|.++.. .|++++|.+.|.++-       .+       ...-..+..+++|++|++..++
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~  183 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence            45666544 589988888887653       22       2346778889999999988755

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=93.97  E-value=0.73  Score=33.36  Aligned_cols=46  Identities=17%  Similarity=0.151  Sum_probs=34.3

Q ss_pred             HHHHcCCHHHHHHHHhcc-------C----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525         87 SYAASHSWPQALSLCRTL-------N----------DDILWACLAGMATYSRDLATSEEAYAA  132 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-------~----------~~~lW~~LA~~Al~~~~l~~A~~~y~~  132 (244)
                      .++..|+|++|.......       .          ....|..+|..-..-++++.|..+|..
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            457889999988877663       1          125688888888888888888877765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.14  Score=35.73  Aligned_cols=82  Identities=11%  Similarity=-0.028  Sum_probs=56.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCC-----H---HHHH
Q psy11525        111 ACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGL-----I---FRAI  182 (244)
Q Consensus       111 ~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~-----~---~~Ai  182 (244)
                      ..-|..++..++++.|..+|...        |+.--....-...+|.++..+|++++|...|.++=.     +   ..--
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~a--------l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g   78 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEA--------IKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA   78 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH--------HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH--------HhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHH
Confidence            45688899999999999998875        111111112235678999999999999998877521     1   1124


Q ss_pred             HHHHHhcCHHHHHHHHHh
Q psy11525        183 QVSILTHNWDRALELALR  200 (244)
Q Consensus       183 ~m~~~l~~W~~Al~LA~~  200 (244)
                      .++..+++|++|+..-++
T Consensus        79 ~~~~~~~~~~~A~~~~~~   96 (117)
T d1elwa_          79 AALEFLNRFEEAKRTYEE   96 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHH
Confidence            577888888888765443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.13  Score=39.41  Aligned_cols=113  Identities=19%  Similarity=0.174  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCC----HHHH-
Q psy11525        107 DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGL----IFRA-  181 (244)
Q Consensus       107 ~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~----~~~A-  181 (244)
                      -.+|.. |..+...++++.|..+|..+.+..- .          ..-.+|.+...+|++++|.+.|.++=.    .-.| 
T Consensus         6 ~~l~~~-g~~~~~~~d~~~Al~~~~~i~~~~~-~----------~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~   73 (192)
T d1hh8a_           6 ISLWNE-GVLAADKKDWKGALDAFSAVQDPHS-R----------ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY   73 (192)
T ss_dssp             HHHHHH-HHHHHHTTCHHHHHHHHHTSSSCCH-H----------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHH-HHHHHHCCCHHHHHHHHHhcCCCCH-H----------HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhH
Confidence            368976 9999999999999999987665421 1          123579999999999999999988611    1111 


Q ss_pred             ---HHHHHHhcCHHHHHHHHHh---c---CC-----------c--hhHHHHHHHHHHHHcCC-cccHHHHHhc
Q psy11525        182 ---IQVSILTHNWDRALELALR---H---KT-----------H--IDTVLYQRKKYLDNLEK-IETNEKFLRL  231 (244)
Q Consensus       182 ---i~m~~~l~~W~~Al~LA~~---~---~~-----------~--~~~vl~~r~~yl~~~~~-~e~~~~f~~~  231 (244)
                         =.+|..++++++|++--++   .   +.           .  ..++++....-+...|+ .++.+.|.++
T Consensus        74 ~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A  146 (192)
T d1hh8a_          74 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA  146 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence               2356789999988754332   1   00           1  12455555555555666 4555555554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=0.13  Score=36.59  Aligned_cols=81  Identities=15%  Similarity=0.130  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHHCCCHHH-------
Q psy11525        109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGI-PVKAAQQAEMYLLGGNISEAESILLQHGLIFR-------  180 (244)
Q Consensus       109 lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~-~~~~~~~A~ia~~~G~~~eAe~~~l~~g~~~~-------  180 (244)
                      -+..+|......++++.|..||.+.=+         +..- ......+|.++...|+|++|...|.++=..+.       
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~---------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~   76 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKE---------LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR   76 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH---------hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHH
Confidence            467899999999999999999987321         1111 11234579999999999999998866422111       


Q ss_pred             --H------HHHHHHhcCHHHHHHHH
Q psy11525        181 --A------IQVSILTHNWDRALELA  198 (244)
Q Consensus       181 --A------i~m~~~l~~W~~Al~LA  198 (244)
                        |      =..+..+++|++|++.=
T Consensus        77 ~~a~~~~~lg~~~~~~~~~~~A~~~~  102 (128)
T d1elra_          77 QIAKAYARIGNSYFKEEKYKDAIHFY  102 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence              1      13456666777776643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.65  E-value=0.4  Score=33.81  Aligned_cols=47  Identities=11%  Similarity=-0.003  Sum_probs=40.3

Q ss_pred             HHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         87 SYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        87 ~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      .|...|+|++|...-...     .+...|..+|......++++-|..+|.+.
T Consensus        13 ~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_          13 DAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence            468899999999877553     56889999999999999999999998874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.26  Score=35.98  Aligned_cols=81  Identities=11%  Similarity=-0.018  Sum_probs=58.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHHcCCHHHHHHHHHHC-----CCHHHH---
Q psy11525        111 ACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLLGGNISEAESILLQH-----GLIFRA---  181 (244)
Q Consensus       111 ~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~~G~~~eAe~~~l~~-----g~~~~A---  181 (244)
                      ...|..+...++++.|..+|.+.=.         +.. ...-....|.+++..|++++|...|.++     +.+..-   
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~---------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~   84 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIE---------LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR   84 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH---------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccc---------cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHH
Confidence            4468889999999999999975321         111 1122357899999999999999999876     222211   


Q ss_pred             HHHHHHhcCHHHHHHHHHh
Q psy11525        182 IQVSILTHNWDRALELALR  200 (244)
Q Consensus       182 i~m~~~l~~W~~Al~LA~~  200 (244)
                      -..+..+|+|++|++..++
T Consensus        85 g~~~~~~g~~~eA~~~~~~  103 (159)
T d1a17a_          85 AASNMALGKFRAALRDYET  103 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            4568999999999876654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.23  E-value=0.25  Score=34.21  Aligned_cols=58  Identities=10%  Similarity=-0.214  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhC-CCcHHHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKG-IPVKAAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       109 lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~-~~~~~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      .|-.+|....+.++++-|+.+|.++=         ++.. ..+-...+|.++...|++++|...|.++
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al---------~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a   76 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVC---------QKEPEREEAWRSLGLTQAENEKDGLAIIALNHA   76 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHH---------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhc---------ccccccchhhhhhhhhhhhhhhHHHhhcccccc
Confidence            45667888899999999998887631         1111 1223356788999999999998888763

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=92.59  E-value=0.11  Score=40.28  Aligned_cols=103  Identities=11%  Similarity=-0.094  Sum_probs=68.0

Q ss_pred             HHcCCHHHHHHHHhcc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhh-CCCcHHHHHHHHHHHcCCH
Q psy11525         89 AASHSWPQALSLCRTL--NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIK-GIPVKAAQQAEMYLLGGNI  165 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~--~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~-~~~~~~~~~A~ia~~~G~~  165 (244)
                      ++..+++++.......  .....|-.+|......++++-|+.+|.+.        |+ +. +.++....+|.++...|++
T Consensus        17 ~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~a--------l~-l~p~~~~a~~~lg~~~~~~g~~   87 (259)
T d1xnfa_          17 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQA--------LA-IRPDMPEVFNYLGIYLTQAGNF   87 (259)
T ss_dssp             HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------HH-HCCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHh--------hc-cCCCCHHHHhhhchHHHHHHHH
Confidence            4444455544322221  12357888899989999999888888763        11 11 1122235689999999999


Q ss_pred             HHHHHHHHHCCCHH--------HHHHHHHHhcCHHHHHHHHHh
Q psy11525        166 SEAESILLQHGLIF--------RAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       166 ~eAe~~~l~~g~~~--------~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      ++|...|.++=..+        .--.+|..+++|++|++..++
T Consensus        88 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  130 (259)
T d1xnfa_          88 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  130 (259)
T ss_dssp             HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999997762221        112567889999999887764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.58  E-value=0.9  Score=33.29  Aligned_cols=84  Identities=14%  Similarity=0.014  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHCCC----HHHH---
Q psy11525        109 LWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLGGNISEAESILLQHGL----IFRA---  181 (244)
Q Consensus       109 lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~G~~~eAe~~~l~~g~----~~~A---  181 (244)
                      --...|..+.+.++++-|...|.+.=        ..--..+.-...+|.++...|++++|...|.++=.    .-.|   
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal--------~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~   77 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAI--------TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   77 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH--------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHH
Confidence            34567899999999999999997521        11111112235679999999999999999998732    2222   


Q ss_pred             -HHHHHHhcCHHHHHHHHHh
Q psy11525        182 -IQVSILTHNWDRALELALR  200 (244)
Q Consensus       182 -i~m~~~l~~W~~Al~LA~~  200 (244)
                       =.+|..+++|++|+..-++
T Consensus        78 lg~~~~~l~~~~~A~~~~~~   97 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQR   97 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence             3568899999999766553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.77  Score=37.45  Aligned_cols=102  Identities=14%  Similarity=0.044  Sum_probs=60.5

Q ss_pred             HHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcC-CHHHHHHHHHHhCChhHHHHHHHhhCCCcHHHHHHHHHHHc
Q psy11525         89 AASHSWPQALSLCRTL-----NDDILWACLAGMATYSR-DLATSEEAYAAIEQVDKVMYINHIKGIPVKAAQQAEMYLLG  162 (244)
Q Consensus        89 l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~-~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~~~~~A~ia~~~  162 (244)
                      -+.+++++|+.++...     .+...|...|......+ +++.|..+|.++-..        =-+.......+|.+...+
T Consensus        54 ~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--------~p~~~~a~~~~~~~~~~l  125 (315)
T d2h6fa1          54 QRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWL  125 (315)
T ss_dssp             HHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH
T ss_pred             HhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------HHhhhhHHHHHhHHHHhh
Confidence            5778999999988885     57889999998866644 578777666543110        000011123456666666


Q ss_pred             CCHHHHHHHHHHCCCH----HHH----HHHHHHhcCHHHHHHHH
Q psy11525        163 GNISEAESILLQHGLI----FRA----IQVSILTHNWDRALELA  198 (244)
Q Consensus       163 G~~~eAe~~~l~~g~~----~~A----i~m~~~l~~W~~Al~LA  198 (244)
                      |++++|.+.|.++=..    ..|    -.++..+++|++|++..
T Consensus       126 ~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~  169 (315)
T d2h6fa1         126 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYV  169 (315)
T ss_dssp             TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred             ccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHH
Confidence            6766666666554111    111    23456666666665544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.01  E-value=0.86  Score=33.63  Aligned_cols=45  Identities=13%  Similarity=-0.076  Sum_probs=27.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHC-----CC---HHHHHHHHHHhcCHHHHHHHHH
Q psy11525        155 QAEMYLLGGNISEAESILLQH-----GL---IFRAIQVSILTHNWDRALELAL  199 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~-----g~---~~~Ai~m~~~l~~W~~Al~LA~  199 (244)
                      +|.+++.+|++++|...+.++     ..   +...-..|..+++|++|+..-+
T Consensus        68 la~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~  120 (170)
T d1p5qa1          68 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ  120 (170)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHH
Confidence            566777777777777766544     11   1122345677777777765443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.86  E-value=3.6  Score=32.31  Aligned_cols=121  Identities=12%  Similarity=0.141  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHHC-------CC
Q psy11525        108 ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIP---VKAAQQAEMYLLGGNISEAESILLQH-------GL  177 (244)
Q Consensus       108 ~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~---~~~~~~A~ia~~~G~~~eAe~~~l~~-------g~  177 (244)
                      ..|...|..--..++++-|..||.+..+..     .+....+   ......|.++...|++++|.+.|.++       |.
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~-----~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~  112 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQ-----KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ  112 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHH-----HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHH-----HHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc
Confidence            357777888888888888888888755431     1111111   11245678888888888887776654       33


Q ss_pred             HHHHHH-------HH-HHhcCHHHHHHHHH-------hcCCc--hhHHHHHHHHHHHHcCC-cccHHHHHhccc
Q psy11525        178 IFRAIQ-------VS-ILTHNWDRALELAL-------RHKTH--IDTVLYQRKKYLDNLEK-IETNEKFLRLQS  233 (244)
Q Consensus       178 ~~~Ai~-------m~-~~l~~W~~Al~LA~-------~~~~~--~~~vl~~r~~yl~~~~~-~e~~~~f~~~~~  233 (244)
                      +..+..       +| ..+++|++|++.-+       ..+..  ...++......+...|+ .++.+.|.++..
T Consensus       113 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            322222       22 33577777665443       23211  34445555666666666 678888877653

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=89.58  E-value=2.7  Score=30.47  Aligned_cols=88  Identities=14%  Similarity=0.045  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCcH------------HHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        108 ILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPVK------------AAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       108 ~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~~------------~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      ......|..+...+++..|..+|...     +.++..-......            ...+|.++..+|++++|...|-++
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~a-----l~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~a   90 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKI-----VSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA   90 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH-----HHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhh
Confidence            34667788888888888888888652     2222211111111            123677788888888888877665


Q ss_pred             CC-----H---HHHHHHHHHhcCHHHHHHHHHh
Q psy11525        176 GL-----I---FRAIQVSILTHNWDRALELALR  200 (244)
Q Consensus       176 g~-----~---~~Ai~m~~~l~~W~~Al~LA~~  200 (244)
                      =.     +   ..--.++..+++|++|++.-++
T Consensus        91 l~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~  123 (168)
T d1kt1a1          91 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEK  123 (168)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            11     1   1123567888888888765443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=88.86  E-value=3.9  Score=31.28  Aligned_cols=81  Identities=14%  Similarity=0.167  Sum_probs=48.6

Q ss_pred             HHHcCCHHHHHHHHhcc---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc---HHHHH
Q psy11525         88 YAASHSWPQALSLCRTL---------NDDILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV---KAAQQ  155 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~---------~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~---~~~~~  155 (244)
                      +...|++++|.......         .....|..+|...+..++++.|...|.+.-     ...+.....+.   .....
T Consensus       223 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~l  297 (366)
T d1hz4a_         223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN-----ENARSLRLMSDLNRNLLLL  297 (366)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHhhcccChHHHHHHHHH
Confidence            36778888888776653         123556678888888888888887776532     11111111111   12346


Q ss_pred             HHHHHHcCCHHHHHHHHH
Q psy11525        156 AEMYLLGGNISEAESILL  173 (244)
Q Consensus       156 A~ia~~~G~~~eAe~~~l  173 (244)
                      |.++...|++++|.+.|.
T Consensus       298 a~~~~~~g~~~~A~~~l~  315 (366)
T d1hz4a_         298 NQLYWQAGRKSDAQRVLL  315 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHH
Confidence            677777777777776653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.63  E-value=0.43  Score=36.21  Aligned_cols=47  Identities=17%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE  134 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~  134 (244)
                      ++..|++++|...++..     ..+..|..|+......|+..-|.++|.++.
T Consensus        77 ~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          77 EIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            58999999999999886     579999999999999999999999999974

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.63  E-value=2.7  Score=30.11  Aligned_cols=25  Identities=4%  Similarity=-0.126  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525        108 ILWACLAGMATYSRDLATSEEAYAA  132 (244)
Q Consensus       108 ~lW~~LA~~Al~~~~l~~A~~~y~~  132 (244)
                      ..|..-|....+.+++.-|..+|..
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~   42 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKE   42 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4677788889999999999999985

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.13  E-value=0.32  Score=41.12  Aligned_cols=51  Identities=10%  Similarity=-0.008  Sum_probs=38.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHhcCC
Q psy11525        153 AQQAEMYLLGGNISEAESILLQHGLIFRAIQVSILTHNWDRALELALRHKT  203 (244)
Q Consensus       153 ~~~A~ia~~~G~~~eAe~~~l~~g~~~~Ai~m~~~l~~W~~Al~LA~~~~~  203 (244)
                      ...|..+.-.|.|+.|..+|...+++.+++..+..+++|+.|.+++.+.+.
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~~~   68 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS   68 (336)
T ss_dssp             -----------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHcCC
Confidence            457888889999999999999999999999999999999999999999884

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.15  E-value=1.3  Score=32.57  Aligned_cols=46  Identities=9%  Similarity=0.151  Sum_probs=41.7

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      |+..|+|++|++.++..     .....|..+|......++++.|..+|...
T Consensus        72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  122 (170)
T d1p5qa1          72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV  122 (170)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence            68999999999999885     57889999999999999999999999875

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.60  E-value=1.8  Score=31.38  Aligned_cols=47  Identities=9%  Similarity=-0.125  Sum_probs=26.0

Q ss_pred             HHHHHhCChhHH-HHHHHhhCCCc----HHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525        128 EAYAAIEQVDKV-MYINHIKGIPV----KAAQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       128 ~~y~~l~d~~~v-~~l~~i~~~~~----~~~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      .||..+|++..+ ....++..+..    ...++|.++..+|++++|...|.+
T Consensus        85 ~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~  136 (169)
T d1ihga1          85 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK  136 (169)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHH
Confidence            344445554433 23334444322    235678888888888887766654

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=85.55  E-value=1.7  Score=34.89  Aligned_cols=49  Identities=16%  Similarity=0.145  Sum_probs=42.5

Q ss_pred             HHHHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Q psy11525         86 HSYAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAIE  134 (244)
Q Consensus        86 ~~~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l~  134 (244)
                      .+.++.|++++|....+..     .+...|..||..-...|+++-|...|...-
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~   57 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSI   57 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3568899999999988875     578999999999999999999999888653

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.19  E-value=6.6  Score=30.91  Aligned_cols=69  Identities=12%  Similarity=0.017  Sum_probs=37.9

Q ss_pred             cCCHHHHHHHHHHC-----C---CHHHHHHHHHHhcCHHHHHHHHHh---cCC---c-hhHHHHHHHHHHHHcCCcccHH
Q psy11525        162 GGNISEAESILLQH-----G---LIFRAIQVSILTHNWDRALELALR---HKT---H-IDTVLYQRKKYLDNLEKIETNE  226 (244)
Q Consensus       162 ~G~~~eAe~~~l~~-----g---~~~~Ai~m~~~l~~W~~Al~LA~~---~~~---~-~~~vl~~r~~yl~~~~~~e~~~  226 (244)
                      .|+.+.|.++|-++     .   -+...+++....|+.++|-.+-++   ..+   + ...+-....+|-...|..+++.
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~  261 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL  261 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46777777766543     1   123446777777888887555443   222   1 2333344444546667766555


Q ss_pred             HHHh
Q psy11525        227 KFLR  230 (244)
Q Consensus       227 ~f~~  230 (244)
                      ...+
T Consensus       262 ~~~~  265 (308)
T d2onda1         262 KVEK  265 (308)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.43  E-value=1.5  Score=31.90  Aligned_cols=46  Identities=9%  Similarity=0.010  Sum_probs=40.1

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      |+..|+|++|+..|...     .....|-.+|..-...++++-|..+|.+.
T Consensus        87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~a  137 (169)
T d1ihga1          87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKA  137 (169)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHH
Confidence            57889999999999885     56789999999999999999999888764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=82.42  E-value=1.8  Score=33.40  Aligned_cols=83  Identities=13%  Similarity=-0.026  Sum_probs=43.9

Q ss_pred             HHHcCCHHHHHHHHhccC-------C----HHHHHHHHHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc-----H
Q psy11525         88 YAASHSWPQALSLCRTLN-------D----DILWACLAGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV-----K  151 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~~-------~----~~lW~~LA~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~-----~  151 (244)
                      |...|++++|....+...       .    -..+..++......+++..|...|...-     ...........     .
T Consensus        61 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al-----~~~~~~~~~~~~~~~~~  135 (366)
T d1hz4a_          61 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF-----QLINEQHLEQLPMHEFL  135 (366)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCTTSTHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhHhcccchhhHHHHH
Confidence            356677777777665431       1    1234445556666666666665554311     11111111111     1


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHC
Q psy11525        152 AAQQAEMYLLGGNISEAESILLQH  175 (244)
Q Consensus       152 ~~~~A~ia~~~G~~~eAe~~~l~~  175 (244)
                      ....|.++...|++++|...|.++
T Consensus       136 ~~~la~~~~~~~~~~~a~~~~~~~  159 (366)
T d1hz4a_         136 VRIRAQLLWAWARLDEAEASARSG  159 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHH
Confidence            234577778888888888777654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=82.31  E-value=6.5  Score=27.81  Aligned_cols=53  Identities=13%  Similarity=-0.026  Sum_probs=33.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHhCChhHHHHHHHhhCCCc------------HHHHHHHHHHHcCCHHHHHHHHHH
Q psy11525        114 AGMATYSRDLATSEEAYAAIEQVDKVMYINHIKGIPV------------KAAQQAEMYLLGGNISEAESILLQ  174 (244)
Q Consensus       114 A~~Al~~~~l~~A~~~y~~l~d~~~v~~l~~i~~~~~------------~~~~~A~ia~~~G~~~eAe~~~l~  174 (244)
                      |...+..++++.|..+|.+.        |+--...++            -...+|.++..+|++++|.+.|.+
T Consensus        16 g~~~~~~g~y~~Ai~~y~~A--------l~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRA--------MEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH--------HHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH--------HHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            66778889999999999873        222222221            112467777777777777665544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.54  E-value=1.6  Score=31.45  Aligned_cols=46  Identities=17%  Similarity=0.202  Sum_probs=40.7

Q ss_pred             HHHcCCHHHHHHHHhcc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy11525         88 YAASHSWPQALSLCRTL-----NDDILWACLAGMATYSRDLATSEEAYAAI  133 (244)
Q Consensus        88 ~l~~~~~~~A~~~~~~~-----~~~~lW~~LA~~Al~~~~l~~A~~~y~~l  133 (244)
                      |+..|+|++|++.|...     .....|-.+|.....-++++.|..+|.+.
T Consensus        77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~a  127 (153)
T d2fbna1          77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA  127 (153)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHH
Confidence            68999999999999884     46788999999999999999999998764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.27  E-value=3.7  Score=30.54  Aligned_cols=42  Identities=24%  Similarity=0.132  Sum_probs=20.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHC--------CCHHHHHHHHHHhcCHHHHHH
Q psy11525        155 QAEMYLLGGNISEAESILLQH--------GLIFRAIQVSILTHNWDRALE  196 (244)
Q Consensus       155 ~A~ia~~~G~~~eAe~~~l~~--------g~~~~Ai~m~~~l~~W~~Al~  196 (244)
                      .|+.+...|++++|...+.+.        .-+..-+..+..+|++++|++
T Consensus        73 la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~  122 (179)
T d2ff4a2          73 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALG  122 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            455555666666665555443        112222445555555555554