Psyllid ID: psy11549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGAHYADDSSLI
Secondary Structure (PSIPRED)
ccccEEcccccccEEEEEcccEEEEEccccccEEEEEEEEcccccccccEEEEEEEcccEEEccccEEEEEEccccEEEEEEEEEcccccEEEEEEccccccccccccEEEEcccEEEEEEEEccccccEEEEEEEEcccEEEEEcEEEEEEEccccccccccEEEEEcccEEEEEEEccccccccEEEEEEEEEcccccEEEEEEccccccEEEEEcccccccEEEEEEEEEccccccccccEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccEEEEEccEEEEEcccHccccEEEEEEEccccccccccEEEEEEccccccccccccEEEccccEEEEEEEccccccccEEEEEEcccccccccccccEEEEccccEEEEEcccHccccEEEEEEEcccccccccEEEEEEEcccccccccEEEEcccccEEEEEEEcccccccccEEEEEEEccccccccEEEEEEccccEEEEEEEcccccEEEEEEEEEEcccccccccccccEccccccccccccc
Coil and Loop (DISEMBL)
maggiplahntsaRIILSNQSLVLQKVsrqsagtykcsaintkgeatsnQLKLRVkyapicksdrivivgasrsesvdihcaveadpparsfkwkfnnsgetldvgserfssgsrgsmlrytpvteldygtlscaaqnaigtqvtPCLYQVVlagkpqppqncsvrnettssvhisctpgydgglpqtFTLELYSASDLNLLVnltnldtpaftledlgldgTVLMRVVISGVnakgrslpviwddfsmsgahyaddssli
Flexible Loop (DISEMBL)
maggiplahntsariiLSNQSLVLQKVSRQSagtykcsaintkgeatsnqlkLRVKYAPICKSDRIVIVGASRSESVDIHCAVEadpparsfkwkfnnsgetldvgserfssgsrgsMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGvnakgrslpviwddfsmsgahyaddssli
Low Complexity Region (SEG)
MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVgserfssgsrgsMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASdlnllvnltnldtPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGAHYADDSSLI
Disordered region (IsUnstruct)
************ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKF*********************MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG****************SVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSM************
Disordered Region (DISOPRED)
MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR*******RSESVDIHCAVEADPPARSFKWKFNNS***************RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVI******************
Disordered Region (DISEMBL)
MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG********RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGAHYADDSSLI
Disordered Region (DISPRO)
**GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG********D**MSG**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGAHYADDSSLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q9R044	1252	Nephrin OS=Rattus norvegi	yes	N/A	0.823	0.171	0.287	2e-12
O60500	1241	Nephrin OS=Homo sapiens G	yes	N/A	0.816	0.171	0.286	9e-12
Q9QZS7	1256	Nephrin OS=Mus musculus G	yes	N/A	0.823	0.171	0.283	1e-11
Q967D7	1531	Protein turtle OS=Drosoph	no	N/A	0.678	0.115	0.271	8e-09
O15394	837	Neural cell adhesion mole	no	N/A	0.793	0.247	0.262	1e-07
Q98892	337	Opioid-binding protein/ce	yes	N/A	0.505	0.391	0.279	3e-07
P22648	898	Fasciclin-2 OS=Schistocer	N/A	N/A	0.609	0.177	0.276	6e-07
P35329	862	B-cell receptor CD22 OS=M	no	N/A	0.421	0.127	0.291	9e-07
Q9I7U4	18141	Titin OS=Drosophila melan	no	N/A	0.842	0.012	0.259	1e-06
Q5IS61	345	Opioid-binding protein/ce	no	N/A	0.455	0.344	0.282	1e-06

>sp|Q9R044|NPHN_RAT Nephrin OS=Rattus norvegicus GN=Nphs1 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 99/233 (42%), Gaps = 18/233 (7%)

Query: 18   SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD----RIVIVGASR 73
            S   L +++     AG Y+C   N    A    ++L V++AP         ++   G S 
Sbjct: 811  STGRLRIRQAKLSQAGAYQCIVDNGVAPAARGLVRLVVRFAPQVDQPTPLTKVAAAGDST 870

Query: 74   SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS------RGSMLRYTPVTEL 127
            S S  +HC     P    F W  N  G  LD+   R++           S+L    V+  
Sbjct: 871  S-SATLHCRARGVPNI-DFTWTKN--GVPLDLQDPRYTEHRYHQGVVHSSLLTIANVSAA 926

Query: 128  -DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP 186
             DY    C A NA+G+  T    Q+V   +P PP    V + +  SV +   PG+DGGLP
Sbjct: 927  QDYALFKCTATNALGSDHTNI--QLVSISRPDPPLGLKVVSISPHSVGLEWKPGFDGGLP 984

Query: 187  QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
            Q F +  Y A +    +++  L T A T    GL  +   R+ +   NA G S
Sbjct: 985  QRFQIR-YEALETPGFLHVDVLPTQATTFTLTGLKPSTRYRIWLLASNALGDS 1036

Seems to play a role in the development or function of the kidney glomerular filtration barrier. Regulates glomerular vascular permeability. May anchor the podocyte slit diaphragm to the actin cytoskeleton. Plays a role in skeletal muscle formation through regulation of myoblast fusion.
Rattus norvegicus (taxid: 10116)

>sp|O60500|NPHN_HUMAN Nephrin OS=Homo sapiens GN=NPHS1 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 99/241 (41%), Gaps = 28/241 (11%)

Query: 22   LVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD----RIVIVGASRSESV 77
            L +       AG Y+C   N         L+L V++AP  +      ++   G S S S 
Sbjct: 801  LRIHHAKLAQAGAYQCIVDNGVAPPARRLLRLVVRFAPQVEHPTPLTKVAAAGDSTS-SA 859

Query: 78   DIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS------GSRGSMLRYTPVTEL-DYG 130
             +HC     P    F W  N  G  LD+   R++       G   S+L    V+   DY 
Sbjct: 860  TLHCRARGVPNI-VFTWTKN--GVPLDLQDPRYTEHTYHQGGVHSSLLTIANVSAAQDYA 916

Query: 131  TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFT 190
              +C A NA+G+  T    Q+V   +P PP    V + T  SV +   PG+DGGLPQ F 
Sbjct: 917  LFTCTATNALGSDQTNI--QLVSISRPDPPSGLKVVSLTPHSVGLEWKPGFDGGLPQRFC 974

Query: 191  LELYSASDLNL-LVNLTNLDTPAFTLEDLGLDGTVLMRVVI--------SGVNAKGRSLP 241
            +   +        V++       FTL   GL  +   RV +        SG+  KG  LP
Sbjct: 975  IRYEALGTPGFHYVDVVPPQATTFTL--TGLQPSTRYRVWLLASNALGDSGLADKGTQLP 1032

Query: 242  V 242
            +
Sbjct: 1033 I 1033

Seems to play a role in the development or function of the kidney glomerular filtration barrier. Regulates glomerular vascular permeability. May anchor the podocyte slit diaphragm to the actin cytoskeleton. Plays a role in skeletal muscle formation through regulation of myoblast fusion.

Homo sapiens (taxid: 9606)

>sp|Q9QZS7|NPHN_MOUSE Nephrin OS=Mus musculus GN=Nphs1 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/233 (28%), Positives = 97/233 (41%), Gaps = 18/233 (7%)

Query: 18   SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD----RIVIVGASR 73
            S   L +++     AG Y+C   N    A    ++L V++AP         ++   G S 
Sbjct: 811  STGRLRIRQAKLSQAGAYQCIVDNGVAPAARGLVRLVVRFAPQVDHPTPLTKVAAAGDST 870

Query: 74   SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS------RGSMLRYTPVTEL 127
            S S  +HC     P    F W  N  G  LD+   R++           S+L    V+  
Sbjct: 871  S-SATLHCRARGVPNI-DFTWTKN--GVPLDLQDPRYTEHKYHQGVVHSSLLTIANVSAA 926

Query: 128  -DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP 186
             DY    C A NA+G+  T    Q+V   +P PP    V + +  SV +   PG+DGGLP
Sbjct: 927  QDYALFKCTATNALGSDHTNI--QLVSISRPDPPLGLKVVSVSPHSVGLEWKPGFDGGLP 984

Query: 187  QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
            Q F +  Y A +    + +  L   A T    GL  +   R+ +   NA G S
Sbjct: 985  QRFQIR-YEALESPGFLYMDVLPAQATTFTLTGLKPSTRYRIWLLASNALGDS 1036

Seems to play a role in the development or function of the kidney glomerular filtration barrier. Regulates glomerular vascular permeability. May anchor the podocyte slit diaphragm to the actin cytoskeleton. Plays a role in skeletal muscle formation through regulation of myoblast fusion.

Mus musculus (taxid: 10090)

>sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster GN=tutl PE=2 SV=2

 Score = 61.2 bits (147), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 11/188 (5%)

Query: 15  IILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKYAPICKSDRIVIVGASR 73
           ++++N SL+  +V+ +  G Y C+  N +G A  S  + + V+  P    +   +     
Sbjct: 491 VVMANGSLLFTRVNEEHQGQYACTPYNAQGTAGASGVMDVLVRKPPAFTVEPETLYQRKV 550

Query: 74  SESVDIHC-AVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
            +SV++HC A+EA+   R + KW+    GE L   S+R      G  +    +   D+G 
Sbjct: 551 GDSVEMHCDALEAEGTERPTIKWQ-RQEGEQL-TESQRNRIKISGGNITIENLRREDFGY 608

Query: 132 LSCAAQNAIGTQVTPCLYQVVLAG-KPQPPQNCSVRNETTSSVHISCTPGYDGG--LPQT 188
             C   N + T +   + Q+V+ G +P  P N + +  T SS+ +   PGY GG    Q 
Sbjct: 609 YQCVVSNEVATLM--AVTQLVIEGTQPHAPYNITGK-ATESSITLQWLPGYSGGSEYKQD 665

Query: 189 FTLELYSA 196
           +T+    A
Sbjct: 666 YTIWFREA 673

Essential protein that plays a role in the establishment of coordinated motor control.

Drosophila melanogaster (taxid: 7227)

>sp|O15394|NCAM2_HUMAN Neural cell adhesion molecule 2 OS=Homo sapiens GN=NCAM2 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 108/225 (48%), Gaps = 18/225 (8%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
           SL ++ V    +G Y C A +  G      + L ++YAP   S++  I  +     ++I 
Sbjct: 364 SLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQ-TIYYSWEGNPINIS 421

Query: 81  CAVEADPPARSFKWKFNN----SGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA 136
           C V+++PPA S  W+ +     +  T ++ +  +S+G R  +L   P ++ D+G  +C A
Sbjct: 422 CDVKSNPPA-SIHWRRDKLVLPAKNTTNLKT--YSTG-RKMILEIAPTSDNDFGRYNCTA 477

Query: 137 QNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT-PGYDGGLP-QTFTLELY 194
            N IGT+     Y + LA  P  P    +   + ++  +S   P   GG+P   + +++ 
Sbjct: 478 TNHIGTRFQE--YILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVK 535

Query: 195 S-ASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR 238
             AS++  +V    + T    L +L  + T  +RV  + VN KG+
Sbjct: 536 EVASEIWKIVRSHGVQT-MVVLNNLEPNTTYEIRV--AAVNGKGQ 577

May play important roles in selective fasciculation and zone-to-zone projection of the primary olfactory axons.

Homo sapiens (taxid: 9606)

>sp|Q98892|OBCAM_CHICK Opioid-binding protein/cell adhesion molecule homolog OS=Gallus gallus GN=OPCML PE=1 SV=2

 Score = 55.8 bits (133), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 4/136 (2%)

Query: 15  IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS 74
            +  ++ L +  ++R+ +G Y+CSA+N        ++K+ V Y P   + +    GAS  
Sbjct: 172 FVSEDEYLEITGITREQSGEYECSAVNDVAVPDVRKVKVTVNYPPYISNAK--NTGASVG 229

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
           +   + C   A P A  F+W   ++     +   R  S  R S L +  V+E DYG  +C
Sbjct: 230 QKGILQCEASAVPVAE-FQWFKEDTRLANGLEGVRIESKGRLSTLTFFNVSEKDYGNYTC 288

Query: 135 AAQNAIG-TQVTPCLY 149
            A N +G T  +  LY
Sbjct: 289 VATNKLGNTNASIILY 304

Inhibits neurite outgrowth.

Gallus gallus (taxid: 9031)

>sp|P22648|FAS2_SCHAM Fasciclin-2 OS=Schistocerca americana GN=FAS2 PE=1 SV=2

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 71/177 (40%), Gaps = 18/177 (10%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
            L++  V R   G Y+C A N  GE   N   L V++ P         V      +V++ 
Sbjct: 391 KLIISNVLRSDDGLYECIATNKGGEVKKNG-HLMVEFKPSFADTPQKEVWGWEQHAVNLT 449

Query: 81  CAVEADPPARSFKWKFNNSG--------ETLDVGSERFSSGSRGSMLRYTPVTELDYGTL 132
           C   + P A +  W FN +         E    G   F SG R S L+  P     YG  
Sbjct: 450 CLAHSIPNA-TISWHFNGADLFRGREGQELQQTGYTLFGSGPR-STLQVIPFNRKMYGNY 507

Query: 133 SCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT---PGYDGGLP 186
            C A N  GT V    ++++L     P     V+ +  ++  ++     PG DGGLP
Sbjct: 508 KCTATNKHGTAV----HEIMLREARVPSAVLQVKMDVMTATTVTFKFFGPGNDGGLP 560

Neuronal recognition molecule. Involved in a pathway recognition for axons during the development of nerve fascicles.

Schistocerca americana (taxid: 7009)

>sp|P35329|CD22_MOUSE B-cell receptor CD22 OS=Mus musculus GN=Cd22 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 10/120 (8%)

Query: 22  LVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHC 81
           L+L  V++   G Y+C A N  G   S +++L V YAP      I    A   +SV++ C
Sbjct: 309 LILHSVTKDMRGKYRCQASNDIGPGESEEVELTVHYAPEPSRVHIYPSPAEEGQSVELIC 368

Query: 82  AVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG 141
              A P A ++ W  N           +   G     LR   V+    G  SC A+N +G
Sbjct: 369 ESLASPSATNYTWYHN----------RKPIPGDTQEKLRIPKVSPWHAGNYSCLAENRLG 418

Mediates B-cell B-cell interactions. May be involved in the localization of B-cells in lymphoid tissues. Binds sialylated glycoproteins; one of which is CD45. Preferentially binds to alpha-2,6-linked sialic acid. The sialic acid recognition site can be masked by cis interactions with sialic acids on the same cell surface. Upon ligand induced tyrosine phosphorylation in the immune response seems to be involved in regulation of B-cell antigen receptor signaling. Plays a role in positive regulation through interaction with Src family tyrosine kinases and may also act as an inhibitory receptor by recruiting cytoplasmic phosphatases via their SH2 domains that block signal transduction through dephosphorylation of signaling molecules.

Mus musculus (taxid: 10090)

>sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/231 (25%), Positives = 100/231 (43%), Gaps = 11/231 (4%)

Query: 24    LQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCA 82
             ++K + ++  TY C A N KG A TS +LKL+ K  P+ + +   +    R+ S+    A
Sbjct: 17529 IEKTTIETEATYTCVATNEKGSAETSCRLKLQQK--PVLEVEDKYLTQKLRTGSILTIPA 17586

Query: 83    VEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
                  P  +  W    + E     S    +    S      VT    G     A N  GT
Sbjct: 17587 TVRGYPQPTVTWH-KETIEQKTTKSVTIETTETTSTYTVKKVTREQSGKYKVTATNESGT 17645

Query: 143   QVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGY-DGGLP-QTFTLELYSA-SDL 199
                 C  QV+   KP  PQ+  +++    S+ +  TP   DGGL  + +TLE     +++
Sbjct: 17646 TYVECTVQVI--DKPSRPQSLEIKDIKKDSIVLEWTPPVDDGGLDIEKYTLEKCDVQNNV 17703

Query: 200   NLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMS 250
              + V+  N D  ++ ++ L ++   + RVV    N  G S P   D  +++
Sbjct: 17704 WMKVSDFNKDIKSYAVQKLSMNAQYMFRVV--AANPIGESEPTESDPVTIT 17752

Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Drosophila melanogaster (taxid: 7227)

>sp|Q5IS61|OPCM_PANTR Opioid-binding protein/cell adhesion molecule OS=Pan troglodytes GN=OPCML PE=2 SV=1

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 19  NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-ICKSDRIVIVGASRSESV 77
           ++ L +  + R  +G Y+CSA+N        ++K+ V Y P I K+      G S  +  
Sbjct: 184 DEYLEISDIKRDQSGEYECSALNDVAAPDVRKVKITVNYPPYISKAKN---TGVSVGQKG 240

Query: 78  DIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ 137
            + C   A P A  F+W    +     +   R  +  R S L +  V+E DYG  +C A 
Sbjct: 241 ILSCEASAVPMAE-FQWFKEETRLATGLDGMRIENKGRMSTLTFFNVSEKDYGNYTCVAT 299

Query: 138 NAIG 141
           N +G
Sbjct: 300 NKLG 303

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Pan troglodytes (taxid: 9598)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
270010949	812	hypothetical protein TcasGA2_TC016379 [T	0.961	0.309	0.572	1e-79
91093961	813	PREDICTED: similar to CG33515 CG33515-PA	0.961	0.308	0.572	1e-79
195385641	832	GJ16040 [Drosophila virilis] gi|19414797	0.996	0.312	0.535	2e-76
194758507	890	GF15000 [Drosophila ananassae] gi|190615	0.996	0.292	0.535	6e-76
195115609	870	GI17336 [Drosophila mojavensis] gi|19391	0.996	0.298	0.531	7e-76
198476416	733	GA25412 [Drosophila pseudoobscura pseudo	0.996	0.354	0.531	1e-75
229608977	665	RT02374p [Drosophila melanogaster] gi|22	0.996	0.390	0.528	2e-75
195437093	859	GK18073 [Drosophila willistoni] gi|19416	0.996	0.302	0.535	3e-75
221475280	1064	CG42313 [Drosophila melanogaster] gi|220	0.996	0.244	0.528	3e-75
194857292	852	GG24233 [Drosophila erecta] gi|190660788	0.996	0.305	0.528	3e-75

>gi|270010949|gb|EFA07397.1| hypothetical protein TcasGA2_TC016379 [Tribolium castaneum]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/255 (57%), Positives = 189/255 (74%), Gaps = 4/255 (1%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +  G  L HN S RII SNQSLVLQKV+RQSAG Y CS +N++GE  SN+L  RV+YAP 
Sbjct: 344 LHNGFVLNHNMSGRIIHSNQSLVLQKVTRQSAGRYVCSVVNSEGETLSNELNFRVQYAPT 403

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG--SM 118
           CK D+ ++VGASR ESVDI C +E+DPPA+S++WKFNNSGETLDV +ERF+  S G  S+
Sbjct: 404 CKFDKFLVVGASRGESVDIVCEIESDPPAKSYRWKFNNSGETLDVAAERFAKTSNGTVSV 463

Query: 119 LRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT 178
           LRYTPV+ELDYG+LSC A N +G QV PC++QVV AGKP P +NCS+ N+T+SSV ++C 
Sbjct: 464 LRYTPVSELDYGSLSCWAINTVGHQVNPCVFQVVAAGKPFPVRNCSLSNQTSSSVEVTCL 523

Query: 179 PGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR 238
            G+DGGLPQ F LELY+A+ L    N+T+   P F L++L  D  V  R+V+  VNAKGR
Sbjct: 524 AGFDGGLPQHFLLELYTANSLVPRYNMTSFRDPEFFLDNLEPD--VTFRIVVFAVNAKGR 581

Query: 239 SLPVIWDDFSMSGAH 253
           S  V+ ++ + + A 
Sbjct: 582 SQGVVLEEVTFTDAE 596

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093961|ref|XP_968247.1| PREDICTED: similar to CG33515 CG33515-PA [Tribolium castaneum]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 146/255 (57%), Positives = 189/255 (74%), Gaps = 4/255 (1%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +  G  L HN S RII SNQSLVLQKV+RQSAG Y CS +N++GE  SN+L  RV+YAP 
Sbjct: 362 LHNGFVLNHNMSGRIIHSNQSLVLQKVTRQSAGRYVCSVVNSEGETLSNELNFRVQYAPT 421

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG--SM 118
           CK D+ ++VGASR ESVDI C +E+DPPA+S++WKFNNSGETLDV +ERF+  S G  S+
Sbjct: 422 CKFDKFLVVGASRGESVDIVCEIESDPPAKSYRWKFNNSGETLDVAAERFAKTSNGTVSV 481

Query: 119 LRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT 178
           LRYTPV+ELDYG+LSC A N +G QV PC++QVV AGKP P +NCS+ N+T+SSV ++C 
Sbjct: 482 LRYTPVSELDYGSLSCWAINTVGHQVNPCVFQVVAAGKPFPVRNCSLSNQTSSSVEVTCL 541

Query: 179 PGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR 238
            G+DGGLPQ F LELY+A+ L    N+T+   P F L++L  D  V  R+V+  VNAKGR
Sbjct: 542 AGFDGGLPQHFLLELYTANSLVPRYNMTSFRDPEFFLDNLEPD--VTFRIVVFAVNAKGR 599

Query: 239 SLPVIWDDFSMSGAH 253
           S  V+ ++ + + A 
Sbjct: 600 SQGVVLEEVTFTDAE 614

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195385641|ref|XP_002051513.1| GJ16040 [Drosophila virilis] gi|194147970|gb|EDW63668.1| GJ16040 [Drosophila virilis]

 Score =  291 bits (745), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 143/267 (53%), Positives = 182/267 (68%), Gaps = 7/267 (2%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +  GI L HNTSAR+I SNQSLVLQK+++  AG Y CSAIN +GE  SNQL LRVKY P+
Sbjct: 388 LHNGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPV 447

Query: 61  CK-SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           CK +DR++++GAS+ E+V++ C ++ADPP R+F+WKFNNSGETLDVGSERFS     S+L
Sbjct: 448 CKHTDRVILIGASKDETVEVICEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSIL 507

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
           +YTPVT+ DYGTLSC A N +GTQ  PCL+QVVLA  P    NCS+ N T  SV I C P
Sbjct: 508 KYTPVTDQDYGTLSCWAANEVGTQQQPCLFQVVLAALPNGVSNCSIFNRTELSVDIQCIP 567

Query: 180 GYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM------RVVISGV 233
           GYDGGLPQ F LE++S       +NLTN +   F+LE+L    +++M      R+ I   
Sbjct: 568 GYDGGLPQIFVLEMFSTRTGITRLNLTNAEEALFSLENLDTLTSMMMQENNSLRMRIYSY 627

Query: 234 NAKGRSLPVIWDDFSMSGAHYADDSSL 260
           N KGRS   +  DF +    Y  D  +
Sbjct: 628 NQKGRSAAYLLPDFIIGSTAYKTDDDV 654

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194758507|ref|XP_001961503.1| GF15000 [Drosophila ananassae] gi|190615200|gb|EDV30724.1| GF15000 [Drosophila ananassae]

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 143/267 (53%), Positives = 181/267 (67%), Gaps = 7/267 (2%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +  GI L HNTSAR+I SNQSLVLQK+++  AG Y CSAIN +GE  SNQL LRVKY PI
Sbjct: 418 LHNGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPI 477

Query: 61  CK-SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           CK SDR++++GAS+ E+V++ C ++ADPP R+F+WKFNNSGETLDVGSERFS     S+L
Sbjct: 478 CKHSDRVILIGASKDETVEVVCEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSIL 537

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
           +YTPVT+ DYGTLSC A N +GTQ  PCL+QVVLA  P    NC+V N T  SV I C P
Sbjct: 538 KYTPVTDQDYGTLSCWASNEVGTQQHPCLFQVVLAALPNAVSNCTVFNRTELSVDIQCIP 597

Query: 180 GYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVL------MRVVISGV 233
           GYDGGLPQ F LE++S        NL+N +   F+LE+L    +++      +R+ I   
Sbjct: 598 GYDGGLPQIFVLEMFSTRTGITRFNLSNAEEALFSLENLDTLTSMMVQENNSLRLRIYSY 657

Query: 234 NAKGRSLPVIWDDFSMSGAHYADDSSL 260
           N KGRS   +  DF +    Y  D  +
Sbjct: 658 NQKGRSAAYLLPDFIIGSTAYKTDDDV 684

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195115609|ref|XP_002002349.1| GI17336 [Drosophila mojavensis] gi|193912924|gb|EDW11791.1| GI17336 [Drosophila mojavensis]

 Score =  289 bits (740), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 142/267 (53%), Positives = 181/267 (67%), Gaps = 7/267 (2%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +  GI L HNTSAR+I SNQSLVLQK+++  AG Y CSAIN +GE  SNQL LRVKY P+
Sbjct: 409 LHNGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPV 468

Query: 61  CK-SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           CK +DR++++GAS+ E+V++ C ++ADPP R+F+WKFNNSGETLDVGSERFS     S+L
Sbjct: 469 CKHTDRVILIGASKDETVEVVCEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSIL 528

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
           +YTPVT+ DYGTLSC A N +GTQ  PCL+QVVLA  P    NCS+ N T  SV I C P
Sbjct: 529 KYTPVTDQDYGTLSCWAANEVGTQQHPCLFQVVLAALPNGVSNCSIFNRTELSVDIQCIP 588

Query: 180 GYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM------RVVISGV 233
           GYDGGLPQ F LE++S        NL+N +   F+LE+L    +++M      R+ I   
Sbjct: 589 GYDGGLPQIFVLEMFSTRTGITRFNLSNAEEALFSLENLDTLTSMMMQENNSLRLRIYSY 648

Query: 234 NAKGRSLPVIWDDFSMSGAHYADDSSL 260
           N KGRS   +  DF +    Y  D  +
Sbjct: 649 NQKGRSAAYLLPDFIIGSTAYKTDDDV 675

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198476416|ref|XP_002132349.1| GA25412 [Drosophila pseudoobscura pseudoobscura] gi|198137683|gb|EDY69751.1| GA25412 [Drosophila pseudoobscura pseudoobscura]

 Score =  288 bits (738), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/267 (53%), Positives = 181/267 (67%), Gaps = 7/267 (2%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +  GI L HNT+AR+I SNQSLVLQK+++  AG Y CSAIN +GE  SNQL LRVKY PI
Sbjct: 47  LHNGIHLEHNTTARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPI 106

Query: 61  CK-SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           CK SDR++++GAS+ E+V++ C ++ADPP R+F+WKFNNSGETLDVGSERFS     S+L
Sbjct: 107 CKHSDRVILIGASKDETVEVICEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSIL 166

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
           +YTPVT+ DYGTLSC A N +GTQ  PCL+QVVLA  P    NC+V N T  SV I C P
Sbjct: 167 KYTPVTDQDYGTLSCWAANEVGTQQHPCLFQVVLAALPNAVSNCTVFNRTELSVDIQCIP 226

Query: 180 GYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVL------MRVVISGV 233
           GYDGGLPQ F LE++S        NL+N +   F+LE+L    +++      +R+ I   
Sbjct: 227 GYDGGLPQIFVLEMFSTRTGITRFNLSNAEEALFSLENLDTLTSMMVQENNSLRLRIYSY 286

Query: 234 NAKGRSLPVIWDDFSMSGAHYADDSSL 260
           N KGRS   +  DF +    Y  D  +
Sbjct: 287 NQKGRSAAYLLPDFIIGSTAYKTDDDV 313

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|229608977|gb|ACQ83315.1| RT02374p [Drosophila melanogaster] gi|229608979|gb|ACQ83316.1| RT02376p [Drosophila melanogaster]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 141/267 (52%), Positives = 181/267 (67%), Gaps = 7/267 (2%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +  GI L HNTSAR+I SNQSLVLQK+++  AG Y CSAIN +GE  SNQL LRVKY P+
Sbjct: 393 LHNGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPM 452

Query: 61  CK-SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           CK +DR++++GAS+ E+V++ C ++ADPP R+F+WKFNNSGETLDVGSERFS     S+L
Sbjct: 453 CKHADRVILIGASKDETVEVVCEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSIL 512

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
           +YTPVT+ DYGTLSC A N +GTQ  PCL+QVVLA  P    NC+V N T  SV I C P
Sbjct: 513 KYTPVTDQDYGTLSCWASNEVGTQQHPCLFQVVLAALPNAVSNCTVFNRTELSVDIQCIP 572

Query: 180 GYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVL------MRVVISGV 233
           GYDGGLPQ F LE++S        NL+N +   F+LE+L    +++      +R+ I   
Sbjct: 573 GYDGGLPQIFVLEMFSTRTGITRFNLSNAEEALFSLENLDTLTSMMVQENNSLRLRIYSY 632

Query: 234 NAKGRSLPVIWDDFSMSGAHYADDSSL 260
           N KGRS   +  DF +    Y  D  +
Sbjct: 633 NQKGRSAAYLLTDFIIGSTAYKTDDDV 659

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437093|ref|XP_002066479.1| GK18073 [Drosophila willistoni] gi|194162564|gb|EDW77465.1| GK18073 [Drosophila willistoni]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 143/267 (53%), Positives = 180/267 (67%), Gaps = 7/267 (2%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +  GI L HNTSAR+I SNQSLVLQK+++  AG Y CSAIN +GE  SNQL LRVKY PI
Sbjct: 412 LHNGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPI 471

Query: 61  CK-SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           CK SDR+++ GAS+ E+V++ C ++ADPP R+F+WKFNNSGETLDVGSERFS     S+L
Sbjct: 472 CKHSDRVILTGASKDETVEVVCEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSIL 531

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
           +YTPVT+ DYGTLSC A N +GTQ  PCL+QVVLA  P    NC+V N T  SV I C P
Sbjct: 532 KYTPVTDQDYGTLSCWASNEVGTQQHPCLFQVVLAALPNAVSNCTVFNRTELSVDIQCIP 591

Query: 180 GYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVL------MRVVISGV 233
           GYDGGLPQ F LE++S        NL+N +   F+LE+L    +++      +R+ I   
Sbjct: 592 GYDGGLPQIFVLEMFSTRTGVTRFNLSNPEESLFSLENLDTLTSMMVQENNSLRLRIYSY 651

Query: 234 NAKGRSLPVIWDDFSMSGAHYADDSSL 260
           N KGRS   +  DF +    Y  D  +
Sbjct: 652 NQKGRSAVYLLPDFIIGSTAYKTDDDV 678

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221475280|ref|NP_001014485.3| CG42313 [Drosophila melanogaster] gi|220902042|gb|AAX52666.3| CG42313 [Drosophila melanogaster]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 141/267 (52%), Positives = 181/267 (67%), Gaps = 7/267 (2%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +  GI L HNTSAR+I SNQSLVLQK+++  AG Y CSAIN +GE  SNQL LRVKY P+
Sbjct: 406 LHNGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPM 465

Query: 61  CK-SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           CK +DR++++GAS+ E+V++ C ++ADPP R+F+WKFNNSGETLDVGSERFS     S+L
Sbjct: 466 CKHADRVILIGASKDETVEVVCEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSIL 525

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
           +YTPVT+ DYGTLSC A N +GTQ  PCL+QVVLA  P    NC+V N T  SV I C P
Sbjct: 526 KYTPVTDQDYGTLSCWASNEVGTQQHPCLFQVVLAALPNAVSNCTVFNRTELSVDIQCIP 585

Query: 180 GYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVL------MRVVISGV 233
           GYDGGLPQ F LE++S        NL+N +   F+LE+L    +++      +R+ I   
Sbjct: 586 GYDGGLPQIFVLEMFSTRTGITRFNLSNAEEALFSLENLDTLTSMMVQENNSLRLRIYSY 645

Query: 234 NAKGRSLPVIWDDFSMSGAHYADDSSL 260
           N KGRS   +  DF +    Y  D  +
Sbjct: 646 NQKGRSAAYLLTDFIIGSTAYKTDDDV 672

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194857292|ref|XP_001968921.1| GG24233 [Drosophila erecta] gi|190660788|gb|EDV57980.1| GG24233 [Drosophila erecta]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 141/267 (52%), Positives = 181/267 (67%), Gaps = 7/267 (2%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +  GI L HNTSAR+I SNQSLVLQK+++  AG Y CSAIN +GE  SNQL LRVKY P+
Sbjct: 401 LHNGIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPM 460

Query: 61  CK-SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           CK +DR++++GAS+ E+V++ C ++ADPP R+F+WKFNNSGETLDVGSERFS     S+L
Sbjct: 461 CKHADRVILIGASKDETVEVVCEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSIL 520

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
           +YTPVT+ DYGTLSC A N +GTQ  PCL+QVVLA  P    NC+V N T  SV I C P
Sbjct: 521 KYTPVTDQDYGTLSCWASNEVGTQQHPCLFQVVLAALPNAVSNCTVFNRTELSVDIQCIP 580

Query: 180 GYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVL------MRVVISGV 233
           GYDGGLPQ F LE++S        NL+N +   F+LE+L    +++      +R+ I   
Sbjct: 581 GYDGGLPQIFVLEMFSTRTGITRFNLSNAEEALFSLENLDTLTSMMVQENNSLRLRIYSY 640

Query: 234 NAKGRSLPVIWDDFSMSGAHYADDSSL 260
           N KGRS   +  DF +    Y  D  +
Sbjct: 641 NQKGRSAAYLLPDFIIGSTAYKTDDDV 667

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
FB|FBgn0259213	1064	CG42313 [Drosophila melanogast	0.984	0.241	0.496	2.6e-64
FB|FBgn0086604	1201	CG12484 [Drosophila melanogast	0.919	0.199	0.356	5.6e-38
FB|FBgn0016061	939	side "sidestep" [Drosophila me	0.666	0.185	0.376	3.4e-30
FB|FBgn0024189	1542	sns "sticks and stones" [Droso	0.701	0.118	0.243	1.3e-11
UNIPROTKB|O60500	1241	NPHS1 "Nephrin" [Homo sapiens	0.770	0.161	0.287	2.8e-10
UNIPROTKB|D4A8H0	1166	Nphs1 "Nephrin" [Rattus norveg	0.823	0.184	0.270	5.3e-10
UNIPROTKB|G1U0D1	1242	NPHS1 "Uncharacterized protein	0.762	0.160	0.289	5.8e-10
RGD|620460	1252	Nphs1 "nephrosis 1, congenital	0.823	0.171	0.270	5.8e-10
UNIPROTKB|Q9R044	1252	Nphs1 "Nephrin" [Rattus norveg	0.823	0.171	0.270	5.8e-10
MGI|MGI:1859637	1256	Nphs1 "nephrosis 1 homolog, ne	0.823	0.171	0.270	5.8e-10

FB|FBgn0259213 CG42313 [Drosophila melanogaster (taxid:7227)]

 Score = 662 (238.1 bits), Expect = 2.6e-64, P = 2.6e-64
 Identities = 131/264 (49%), Positives = 168/264 (63%)

Query:     4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK- 62
             GI L HNTSAR+I SNQSLVLQK+++  AG Y CSAIN +GE  SNQL LRVKY P+CK 
Sbjct:   409 GIHLEHNTSARVIRSNQSLVLQKITKHYAGNYACSAINDEGETVSNQLPLRVKYTPMCKH 468

Query:    63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYT 122
             +DR++++GAS+ E+V++ C ++ADPP R+F+WKFNNSGETLDV            +L+YT
Sbjct:   469 ADRVILIGASKDETVEVVCEIQADPPPRTFRWKFNNSGETLDVGSERFSVNGSRSILKYT 528

Query:   123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYD 182
             PVT+ DYGTLSC A N +GTQ  PCL+QVVLA  P    NC+V N T  SV I C PGYD
Sbjct:   529 PVTDQDYGTLSCWASNEVGTQQHPCLFQVVLAALPNAVSNCTVFNRTELSVDIQCIPGYD 588

Query:   183 GGLPQTFTLELYSASXXXXXXXXXXXXXPAFTLEDLGLDGTVL------MRVVISGVNAK 236
             GGLPQ F LE++S                 F+LE+L    +++      +R+ I   N K
Sbjct:   589 GGLPQIFVLEMFSTRTGITRFNLSNAEEALFSLENLDTLTSMMVQENNSLRLRIYSYNQK 648

Query:   237 GRSLPVIWDDFSMSGAHYADDSSL 260
             GRS   +  DF +    Y  D  +
Sbjct:   649 GRSAAYLLTDFIIGSTAYKTDDDV 672

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0086604 CG12484 [Drosophila melanogaster (taxid:7227)]

 Score = 419 (152.6 bits), Expect = 5.6e-38, P = 5.6e-38
 Identities = 87/244 (35%), Positives = 133/244 (54%)

Query:     7 LAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRI 66
             L +N +  I +SNQSLVLQ  SR  +G Y C   N +G+  SN ++L +++AP+C+  + 
Sbjct:   422 LTNNPAEGIAVSNQSLVLQNASRARSGIYTCVGSNREGDGESNPVQLDIRFAPVCRPRQR 481

Query:    67 VIVGASRSESVDIHCAVEADPPARSFKWKFN-NSGETLDVXXXXXXXXXXXXMLRYTPVT 125
             +   + R E+V + C ++A+P   ++ WKFN   GET+D+            +  YTP+T
Sbjct:   482 LSYSSGRHETVKVACEIDANPAEATYVWKFNATQGETVDIPASQVAVDRGRSIAHYTPMT 541

Query:   126 ELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGL 185
             E DYGTL C A N IG Q  PC+Y +  AG+P P  NC+V N+T++   I C  G++GGL
Sbjct:   542 ENDYGTLLCWATNEIGDQSEPCVYTIFPAGEPDPLLNCTVLNQTSTGFQIECIEGFNGGL 601

Query:   186 PQTFTLELYSASXXXXXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWD 245
              Q F +E+Y  +             P F +   GL   +   V +   N+KGRS   I  
Sbjct:   602 QQDFIMEVYM-NGTTRHPKISKSKRPYFEVS--GLVPGMGYNVFLIANNSKGRSNATILQ 658

Query:   246 DFSM 249
              +++
Sbjct:   659 VYTL 662

GO:0005886 "plasma membrane" evidence=ISS

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0016061 side "sidestep" [Drosophila melanogaster (taxid:7227)]

 Score = 329 (120.9 bits), Expect = 3.4e-30, Sum P(2) = 3.4e-30
 Identities = 67/178 (37%), Positives = 99/178 (55%)

Query:    18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD-RIVIVGASRSES 76
             S + + L ++ R+SAG Y C A NT+GE  S+ L L+V+++P CKS      +GA    S
Sbjct:   474 STEIMHLTQLERESAGAYSCGATNTEGETRSSSLTLKVQFSPRCKSGTEQTSIGAVSLHS 533

Query:    77 VDIHCAVEADPP-ARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCA 135
             + + C V+ADPP +  F W +NN+     V             + Y P T+ +  TL+C 
Sbjct:   534 ILVKCEVDADPPDSVRFSWTYNNTRNVSPVLNSRIQSNGLASTVTYLPQTDSELITLACW 593

Query:   136 AQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLEL 193
             A NA+G Q TPCL  ++ A  P+ P+ C +RN+T   + + C  G DGGL Q F LE+
Sbjct:   594 ASNAVGRQTTPCLVHILPANTPEAPKACELRNDTV--LEVVCVAGSDGGLSQYFMLEV 649

GO:0008045 "motor neuron axon guidance" evidence=IMP

FB|FBgn0024189 sns "sticks and stones" [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 47/193 (24%), Positives = 80/193 (41%)

Query:     4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-ICK 62
             G  +   TS         L ++   R+  G ++C A N     T+  + L VK+AP I K
Sbjct:   810 GYDMTVKTSTTFANGTSYLHIKDAKREDVGNFRCVADNRVDNPTNRDILLIVKFAPEIAK 869

Query:    63 SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN------NSGETLDVXXXXXXXXXXX 116
             +  ++   +   E   + C  +  P  + F W+ +      N     +V           
Sbjct:   870 TPTLLRAASGTGERGRLPCRAQGSPKPQ-FIWRQDKKDLPINRTYKYEVEERKIDSLTYE 928

Query:   117 XMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
               L    V   DYG   C A+N +G  V     ++    +P PP + ++ N T  +V ++
Sbjct:   929 STLIVDKVAPADYGAYECVARNELGEAVETVRLEIT--SQPDPPLSLNILNVTHDTVTLA 986

Query:   177 CTPGYDGGLPQTF 189
              TPG+DGGL  ++
Sbjct:   987 WTPGFDGGLKASY 999

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0007520 "myoblast fusion" evidence=IMP;TAS

GO:0007523 "larval visceral muscle development" evidence=IMP

GO:0007157 "heterophilic cell-cell adhesion" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0036059 "nephrocyte diaphragm assembly" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005917 "nephrocyte diaphragm" evidence=IDA

GO:0097206 "nephrocyte filtration" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IGI

GO:0061321 "garland nephrocyte differentiation" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0007286 "spermatid development" evidence=IMP

UNIPROTKB|O60500 NPHS1 "Nephrin" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 63/219 (28%), Positives = 85/219 (38%)

Query:    32 AGTYKCSAINTKGEATSNQLKLRVKYAPICKSD----RIVIVGASRSESVDIHCAVEADP 87
             AG Y+C   N         L+L V++AP  +      ++   G S S S  +HC     P
Sbjct:   811 AGAYQCIVDNGVAPPARRLLRLVVRFAPQVEHPTPLTKVAAAGDSTS-SATLHCRARGVP 869

Query:    88 PARSFKWKFNNSGETLDVXXXXXXXXXX------XXMLRYTPVTEL-DYGTLSCAAQNAI 140
                 F W  N  G  LD+                  +L    V+   DY   +C A NA+
Sbjct:   870 NI-VFTWTKN--GVPLDLQDPRYTEHTYHQGGVHSSLLTIANVSAAQDYALFTCTATNAL 926

Query:   141 GTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASXXX 200
             G+  T    Q+V   +P PP    V + T  SV +   PG+DGGLPQ F +  Y A    
Sbjct:   927 GSDQTNI--QLVSISRPDPPSGLKVVSLTPHSVGLEWKPGFDGGLPQRFCIR-YEALGTP 983

Query:   201 XXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
                        A T    GL  +   RV +   NA G S
Sbjct:   984 GFHYVDVVPPQATTFTLTGLQPSTRYRVWLLASNALGDS 1022

GO:0007155 "cell adhesion" evidence=IEA

GO:0007254 "JNK cascade" evidence=IEA

GO:0007520 "myoblast fusion" evidence=IEA

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0044062 "regulation of excretion" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISS;IDA;TAS

GO:0032836 "glomerular basement membrane development" evidence=IEP

GO:0072015 "glomerular visceral epithelial cell development" evidence=IEP

GO:0036057 "slit diaphragm" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007588 "excretion" evidence=TAS

GO:0017022 "myosin binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D4A8H0 Nphs1 "Nephrin" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 5.3e-10, P = 5.3e-10
 Identities = 63/233 (27%), Positives = 89/233 (38%)

Query:    18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD----RIVIVGASR 73
             S   L +++     AG Y+C   N    A    ++L V++AP         ++   G S 
Sbjct:   811 STGRLRIRQAKLSQAGAYQCIVDNGVAPAARGLVRLVVRFAPQVDQPTPLTKVAAAGDST 870

Query:    74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXX------XXMLRYTPVTEL 127
             S S  +HC     P    F W  N  G  LD+                  +L    V+  
Sbjct:   871 S-SATLHCRARGVPNI-DFTWTKN--GVPLDLQDPRYTEHRYHQGVVHSSLLTIANVSAA 926

Query:   128 -DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP 186
              DY    C A NA+G+  T    Q+V   +P PP    V + +  SV +   PG+DGGLP
Sbjct:   927 QDYALFKCTATNALGSDHTNI--QLVSISRPDPPLGLKVVSISPHSVGLEWKPGFDGGLP 984

Query:   187 QTFTLELYSASXXXXXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
             Q F +  Y A               A T    GL  +   R+ +   NA G S
Sbjct:   985 QRFQIR-YEALETPGFLHVDVLPTQATTFTLTGLKPSTRYRIWLLASNALGDS 1036

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G1U0D1 NPHS1 "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)]

 Score = 166 (63.5 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 64/221 (28%), Positives = 88/221 (39%)

Query:    32 AGTYKCSAINTKGEATSNQLKLRVKYAPICKSD----RIVIVGASRSESVDIHCAVEADP 87
             AG Y+C   N         ++L V+YAP  +      ++   G S S S  +HC   A P
Sbjct:   811 AGAYQCVVDNGVAPPARGLVRLVVRYAPQVEHPAPLTKVAAAGDSTS-SATLHCRARAVP 869

Query:    88 PARSFKWKFNNSGETLDVXXXXXXXXXX------XXMLRYTPVTEL-DYGTLSCAAQNAI 140
                 F W  N  G  LD+                  +L    V+   DY   +C A N +
Sbjct:   870 NV-VFTWTKN--GVPLDLQDPRYTEHTYHQGGVHSSLLTIANVSAAHDYALFTCTATNPL 926

Query:   141 GTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSA--SX 198
             G+  T    Q+V   +P PP    V + T  SV +   PG+DGGLPQ F +  Y A  + 
Sbjct:   927 GSDQTNI--QLVSISRPDPPSGLKVVSLTPHSVGLEWKPGFDGGLPQKFRIR-YEALDTP 983

Query:   199 XXXXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
                          AFTL   GL  +   R+ +   NA G S
Sbjct:   984 GFLYMDVLPAQATAFTLT--GLQPSTRYRLWLLASNALGDS 1022

GO:0005886 "plasma membrane" evidence=ISS

GO:0036057 "slit diaphragm" evidence=ISS

RGD|620460 Nphs1 "nephrosis 1, congenital, Finnish type (nephrin)" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 63/233 (27%), Positives = 89/233 (38%)

Query:    18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD----RIVIVGASR 73
             S   L +++     AG Y+C   N    A    ++L V++AP         ++   G S 
Sbjct:   811 STGRLRIRQAKLSQAGAYQCIVDNGVAPAARGLVRLVVRFAPQVDQPTPLTKVAAAGDST 870

Query:    74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXX------XXMLRYTPVTEL 127
             S S  +HC     P    F W  N  G  LD+                  +L    V+  
Sbjct:   871 S-SATLHCRARGVPNI-DFTWTKN--GVPLDLQDPRYTEHRYHQGVVHSSLLTIANVSAA 926

Query:   128 -DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP 186
              DY    C A NA+G+  T    Q+V   +P PP    V + +  SV +   PG+DGGLP
Sbjct:   927 QDYALFKCTATNALGSDHTNI--QLVSISRPDPPLGLKVVSISPHSVGLEWKPGFDGGLP 984

Query:   187 QTFTLELYSASXXXXXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
             Q F +  Y A               A T    GL  +   R+ +   NA G S
Sbjct:   985 QRFQIR-YEALETPGFLHVDVLPTQATTFTLTGLKPSTRYRIWLLASNALGDS 1036

GO:0000165 "MAPK cascade" evidence=ISO

GO:0003094 "glomerular filtration" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISO;IDA;TAS

GO:0007155 "cell adhesion" evidence=IEA;ISO

GO:0007254 "JNK cascade" evidence=IEA;ISO

GO:0007517 "muscle organ development" evidence=IEA

GO:0007519 "skeletal muscle tissue development" evidence=ISO

GO:0007520 "myoblast fusion" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0017022 "myosin binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030507 "spectrin binding" evidence=IPI

GO:0030838 "positive regulation of actin filament polymerization" evidence=IEA;ISO

GO:0032836 "glomerular basement membrane development" evidence=IEA;ISO

GO:0036057 "slit diaphragm" evidence=IDA

GO:0042995 "cell projection" evidence=IEA;ISO

GO:0043234 "protein complex" evidence=IDA

GO:0044062 "regulation of excretion" evidence=IEA;ISO

GO:0045121 "membrane raft" evidence=IDA

GO:0051393 "alpha-actinin binding" evidence=IPI

GO:0072015 "glomerular visceral epithelial cell development" evidence=IEA;ISO

UNIPROTKB|Q9R044 Nphs1 "Nephrin" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 63/233 (27%), Positives = 89/233 (38%)

Query:    18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD----RIVIVGASR 73
             S   L +++     AG Y+C   N    A    ++L V++AP         ++   G S 
Sbjct:   811 STGRLRIRQAKLSQAGAYQCIVDNGVAPAARGLVRLVVRFAPQVDQPTPLTKVAAAGDST 870

Query:    74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXX------XXMLRYTPVTEL 127
             S S  +HC     P    F W  N  G  LD+                  +L    V+  
Sbjct:   871 S-SATLHCRARGVPNI-DFTWTKN--GVPLDLQDPRYTEHRYHQGVVHSSLLTIANVSAA 926

Query:   128 -DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP 186
              DY    C A NA+G+  T    Q+V   +P PP    V + +  SV +   PG+DGGLP
Sbjct:   927 QDYALFKCTATNALGSDHTNI--QLVSISRPDPPLGLKVVSISPHSVGLEWKPGFDGGLP 984

Query:   187 QTFTLELYSASXXXXXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
             Q F +  Y A               A T    GL  +   R+ +   NA G S
Sbjct:   985 QRFQIR-YEALETPGFLHVDVLPTQATTFTLTGLKPSTRYRIWLLASNALGDS 1036

GO:0005515 "protein binding" evidence=IPI

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1859637 Nphs1 "nephrosis 1 homolog, nephrin (human)" [Mus musculus (taxid:10090)]

 Score = 166 (63.5 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 63/233 (27%), Positives = 89/233 (38%)

Query:    18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD----RIVIVGASR 73
             S   L +++     AG Y+C   N    A    ++L V++AP         ++   G S 
Sbjct:   811 STGRLRIRQAKLSQAGAYQCIVDNGVAPAARGLVRLVVRFAPQVDHPTPLTKVAAAGDST 870

Query:    74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXX------XXMLRYTPVTEL 127
             S S  +HC     P    F W  N  G  LD+                  +L    V+  
Sbjct:   871 S-SATLHCRARGVPNI-DFTWTKN--GVPLDLQDPRYTEHKYHQGVVHSSLLTIANVSAA 926

Query:   128 -DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP 186
              DY    C A NA+G+  T    Q+V   +P PP    V + +  SV +   PG+DGGLP
Sbjct:   927 QDYALFKCTATNALGSDHTNI--QLVSISRPDPPLGLKVVSVSPHSVGLEWKPGFDGGLP 984

Query:   187 QTFTLELYSASXXXXXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
             Q F +  Y A               A T    GL  +   R+ +   NA G S
Sbjct:   985 QRFQIR-YEALESPGFLYMDVLPAQATTFTLTGLKPSTRYRIWLLASNALGDS 1036

GO:0000165 "MAPK cascade" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007155 "cell adhesion" evidence=IGI

GO:0007254 "JNK cascade" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007517 "muscle organ development" evidence=IEA

GO:0007519 "skeletal muscle tissue development" evidence=IMP

GO:0007520 "myoblast fusion" evidence=IMP

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=TAS

GO:0017022 "myosin binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030838 "positive regulation of actin filament polymerization" evidence=IGI

GO:0036057 "slit diaphragm" evidence=ISO

GO:0042995 "cell projection" evidence=IDA

GO:0043234 "protein complex" evidence=ISO

GO:0044062 "regulation of excretion" evidence=IMP

GO:0045121 "membrane raft" evidence=ISO

GO:0051393 "alpha-actinin binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	261
pfam00047	62	pfam00047, ig, Immunoglobulin domain	7e-05
cd00063	93	cd00063, FN3, Fibronectin type 3 domain; One of th	1e-04
cd00096	74	cd00096, Ig, Immunoglobulin domain	1e-04
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	7e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	7e-04
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	0.001
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	0.002
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	0.003

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 1/63 (1%)

Query: 74  SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
             SV + C+V   P      W     G           +      L  + VT  D GT +
Sbjct: 1   GSSVTLTCSVSGPPQV-DVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYT 59

Query: 134 CAA 136
           C  
Sbjct: 60  CVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 27/93 (29%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 157 PQPPQNCSVRNETTSSVHISCT-PGYDGGLPQTFTLELYSASDLNLL-VNLTNLDTPAFT 214
           P PP N  V + T++SV +S T P  DGG    + +E       +   V +T     ++T
Sbjct: 1   PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYT 60

Query: 215 LEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF 247
           L  L        RV    VN  G S P      
Sbjct: 61  LTGLKPGTEYEFRVR--AVNGGGESPPSESVTV 91

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. Length = 93

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 77  VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG---SRGSMLRYTPVTELDYGTLS 133
           V + C     PP  +  W  N       V +   SS    S  S L  + VT  D GT +
Sbjct: 1   VTLTCLASGPPPP-TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 134 CAAQNAIGTQ 143
           C A N+ GT 
Sbjct: 60  CVASNSAGTV 69

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 72  SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
           S  E V + C   A PPA +++WK N  G  +    E   +   G+++   P    D G+
Sbjct: 17  SPEEKVTLGCRARASPPA-TYRWKMN--GTEIKFAPESRYTLVAGNLVINNPQKARDAGS 73

Query: 132 LSCAAQNAIGTQVT 145
             C A N  GT V+
Sbjct: 74  YQCLAINRCGTVVS 87

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 4  GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
          G PL  +     I+ + +L++ +  +   GTYKC A N  GE  S   +L V
Sbjct: 35 GQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
           +SV + C  E +P   +  W  +  G+ L   +   +SGS    L    V+  D G  +C
Sbjct: 3   QSVTLTCPAEGNPVP-NITWLKD--GKPLPESNRFVASGST---LTIKSVSLEDSGLYTC 56

Query: 135 AAQNAIG 141
            A+N+ G
Sbjct: 57  VAENSAG 63

Length = 63

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 72  SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
           S    V ++C     PP  +++W  N   E  D    R+S    G+++   P    D G 
Sbjct: 17  SDEGKVSLNCRARGSPPP-TYRWLMNG-TEIDDEPDSRYSLVG-GNLVISNPSKAKDAGR 73

Query: 132 LSCAAQNAIGTQVT 145
             C A N +GT ++
Sbjct: 74  YQCLASNIVGTVLS 87

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 77  VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA 136
           V+  C V  DP   +  W+    GE     +E     S    L+   VT  D G+ +C A
Sbjct: 1   VEFQCEVGGDPVP-TVLWR-KEDGELPKGRAEILDDKS----LKIRNVTAGDEGSYTCEA 54

Query: 137 QNAIGT 142
           +N +G 
Sbjct: 55  ENMVGK 60

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		99.97
KOG4221|consensus	1381		99.95
KOG4194|consensus	873		99.93
KOG4221|consensus	1381		99.92
PHA02785	326	IL-beta-binding protein; Provisional	99.91
KOG4222|consensus	1281		99.89
KOG4222|consensus	1281		99.85
PHA02826	227	IL-1 receptor-like protein; Provisional	99.77
KOG4194|consensus	873		99.72
PHA02785	326	IL-beta-binding protein; Provisional	99.7
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.68
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.63
PHA02826	227	IL-1 receptor-like protein; Provisional	99.61
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.57
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.56
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.55
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.55
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.52
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.51
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.5
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.5
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.5
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.49
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.49
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.48
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.48
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.48
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.47
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.47
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.47
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.47
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.47
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.46
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.46
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.46
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.45
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.44
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.43
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.43
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.43
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.43
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.42
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.42
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.41
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.41
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.4
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.4
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.4
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.39
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.39
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.39
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.39
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.38
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.38
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.35
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.35
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.34
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.34
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.34
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.33
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.33
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.32
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.32
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.31
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.31
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.31
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.3
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.3
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.29
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.29
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.29
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.28
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.28
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.27
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.27
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.27
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.26
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.26
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.24
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.24
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.24
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.24
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.24
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.23
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.22
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.21
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.21
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.21
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.21
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.2
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.19
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.18
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.17
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.17
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.16
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.16
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.15
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.15
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.13
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.12
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.12
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.11
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.11
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.11
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.11
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.11
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.1
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.09
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.09
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.08
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.08
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.07
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.07
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.06
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.06
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.06
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.05
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.05
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.05
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.05
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.05
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.03
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.03
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.02
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.01
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.01
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.01
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	98.99
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	98.99
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	98.99
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.98
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.98
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	98.98
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	98.98
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.97
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	98.97
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	98.96
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	98.96
PF00041	85	fn3: Fibronectin type III domain; InterPro: IPR003	98.96
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	98.95
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	98.95
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.94
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	98.94
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	98.94
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.94
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.94
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.89
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.89
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.88
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.88
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.86
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	98.86
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.86
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.85
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.84
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.84
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.84
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	98.83
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	98.83
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.83
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.82
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.82
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.81
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.81
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.8
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.79
smart00409	86	IG Immunoglobulin.	98.79
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.79
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.79
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.78
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.78
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.77
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.76
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.76
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.74
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.73
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.72
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.72
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.72
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.71
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.7
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.69
KOG0196|consensus	996		98.69
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	98.68
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.68
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.68
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.67
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.67
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.67
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.66
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.66
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.65
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.65
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.65
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	98.65
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	98.64
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.63
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.63
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.62
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.62
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.61
KOG3515|consensus	741		98.6
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.6
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.58
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.58
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.56
PHA03376	221	BARF1; Provisional	98.55
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.51
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.5
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.5
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.5
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.49
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.48
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.48
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	98.47
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.46
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.46
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.46
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.45
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.44
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.43
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.42
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.4
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.4
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.39
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.39
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.39
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.38
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.37
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.36
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.36
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.34
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.34
KOG3515|consensus	741		98.33
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.32
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.28
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.27
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.27
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.27
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.26
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.26
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.25
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.24
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.23
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.22
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.22
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.21
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.2
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.2
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.2
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.2
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.18
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.17
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.15
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.14
PHA03376	221	BARF1; Provisional	98.1
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.09
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.08
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.07
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.07
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.07
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.06
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.06
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.06
PHA02633	63	hypothetical protein; Provisional	98.05
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.04
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.03
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.02
cd00063	93	FN3 Fibronectin type 3 domain; One of three types	98.02
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.02
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	98.02
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.01
smart00409	86	IG Immunoglobulin.	98.0
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.0
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.99
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.99
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.98
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	97.97
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.95
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.95
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.94
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	97.93
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.93
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	97.92
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.86
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	97.86
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.81
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.75
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	97.74
PHA03269	566	envelope glycoprotein C; Provisional	97.73
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.73
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	97.7
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.7
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.68
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.67
smart00060	83	FN3 Fibronectin type 3 domain. One of three types	97.62
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	97.62
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.61
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.61
smart00407	75	IGc1 Immunoglobulin C-Type.	97.61
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	97.58
smart00406	81	IGv Immunoglobulin V-Type.	97.55
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	97.54
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.5
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.47
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.41
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.4
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	97.39
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.38
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.35
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.33
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.31
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.28
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.26
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	97.23
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.22
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.11
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.07
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.06
PHA03271	490	envelope glycoprotein C; Provisional	97.03
PHA03270	466	envelope glycoprotein C; Provisional	96.97
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	96.96
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	96.96
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.96
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	96.95
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.88
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.85
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	96.85
KOG0196|consensus	996		96.82
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.81
PHA02633	63	hypothetical protein; Provisional	96.76
PHA02987	189	Ig domain OX-2-like protein; Provisional	96.71
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.65
PHA03273	486	envelope glycoprotein C; Provisional	96.6
PF09067	104	EpoR_lig-bind: Erythropoietin receptor, ligand bin	96.59
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.56
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.56
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.54
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	96.52
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.46
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.39
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.38
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.36
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.35
smart00406	81	IGv Immunoglobulin V-Type.	96.27
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.24
PF01108	107	Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH	96.23
KOG1480|consensus	909		96.21
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	96.1
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	95.92
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	95.78
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	95.66
PF09294	106	Interfer-bind: Interferon-alpha/beta receptor, fib	95.6
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	95.58
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	95.54
KOG4367|consensus	699		95.51
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	95.49
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	95.46
PHA03042	286	CD47-like protein; Provisional	95.41
KOG1480|consensus	909		95.17
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	95.13
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.83
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	94.8
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	94.61
PHA02982	251	hypothetical protein; Provisional	94.55
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	94.4
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	94.29
PHA03283	542	envelope glycoprotein E; Provisional	94.19
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	93.96
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	93.9
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	93.45
KOG0613|consensus	1205		92.49
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	91.88
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	89.98
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	88.82
PF02010	440	REJ: REJ domain; InterPro: IPR002859 The REJ (Rece	88.71
smart00407	75	IGc1 Immunoglobulin C-Type.	88.38
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	87.92
KOG4258|consensus	1025		87.73
KOG4597|consensus	560		87.59
PHA02865	338	MHC-like TNF binding protein; Provisional	86.76
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	86.53
PHA02914	500	Immunoglobulin-like domain protein; Provisional	86.46
PHA03269	566	envelope glycoprotein C; Provisional	85.33
PF09240	99	IL6Ra-bind: Interleukin-6 receptor alpha chain, bi	85.03
PHA03286	492	envelope glycoprotein E; Provisional	84.93
cd05770	93	IgC_beta2m Class I major histocompatibility comple	84.85
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	84.47
PHA03281	642	envelope glycoprotein E; Provisional	84.4
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	84.25
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	83.76
PF11344	80	DUF3146: Protein of unknown function (DUF3146); In	83.55
PHA03282	540	envelope glycoprotein E; Provisional	82.63
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	81.98
KOG4802|consensus	516		81.68
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	81.61
PHA02982	251	hypothetical protein; Provisional	80.2

>KOG3513|consensus

Probab=100.00  E-value=6.8e-33  Score=230.37  Aligned_cols=245  Identities=24%  Similarity=0.339  Sum_probs=193.5

Q ss_pred             CCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEE
Q psy11549          2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHC   81 (261)
Q Consensus         2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C   81 (261)
                      |+++ +..+++|+.+..+++|.|.+++++|+|.|+|.|.|..|.. ..++.|.|+.++.+...+.. ..+..|+.+.|.|
T Consensus       462 k~~~-~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a-~~~~~L~Vkd~tri~~~P~~-~~v~~g~~v~l~C  538 (1051)
T KOG3513|consen  462 KGGE-KLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKA-ESTGNLIVKDATRITLAPSN-TDVKVGESVTLTC  538 (1051)
T ss_pred             cCCc-ccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCcc-ceEEEEEEecCceEEeccch-hhhccCceEEEEe
Confidence            4444 4456777888899999999999999999999999999998 67899999999998875554 7889999999999


Q ss_pred             EEeeCCC-CceeEEEEcCCccccccCCceEEeCCce--eEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549         82 AVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSRG--SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus        82 ~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      ++...+. ...|.|.++|..........++...+..  ..|+|.++...|+|.|.|+|+........  ...+.|..+|.
T Consensus       539 e~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~--~A~l~V~gpPg  616 (1051)
T KOG3513|consen  539 EASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASA--RADLLVRGPPG  616 (1051)
T ss_pred             ecccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhc--ccceEEecCCC
Confidence            9997765 4479999988655555555555443321  35999999999999999999986555554  45567779999


Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE-EEecCC---C--CcEEEcCCCCCCccEEEEEEE
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV-NLTNLD---T--PAFTLEDLGLDGTVLMRVVIS  231 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~---~--~~~~i~~~~l~~~~~Y~~~~~  231 (261)
                      ||.++.+.......+.|+|.++.+++.|+. |.++++.....  .| .+....   .  ..-++.+  |.|...|+|||.
T Consensus       617 pP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~--~W~~v~~vp~~~~~~~sa~vv~--L~Pwv~YeFRV~  692 (1051)
T KOG3513|consen  617 PPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPFPG--KWKAVTTVPGNITGDESATVVN--LSPWVEYEFRVV  692 (1051)
T ss_pred             CCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCCCC--cceEeeECCCcccCccceeEEc--cCCCcceEEEEE
Confidence            999999999999999999999999989976 99998877444  44 221111   1  1234556  999999999999


Q ss_pred             EEcCCCcCCceeeeee-eecccccC
Q psy11549        232 GVNAKGRSLPVIWDDF-SMSGAHYA  255 (261)
Q Consensus       232 a~N~~G~~~~s~~~~~-~~~~~~~~  255 (261)
                      |.|.+|.+++|.+.+. +++.+.|.
T Consensus       693 AvN~iG~gePS~pS~~~rT~ea~P~  717 (1051)
T KOG3513|consen  693 AVNSIGIGEPSPPSEKVRTPEAAPS  717 (1051)
T ss_pred             EEcccccCCCCCCccceecCCCCCc
Confidence            9999999999998864 34444443

>KOG3513|consensus

Probab=99.97  E-value=3.1e-28  Score=202.90  Aligned_cols=229  Identities=19%  Similarity=0.216  Sum_probs=179.0

Q ss_pred             CCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCc
Q psy11549         11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPAR   90 (261)
Q Consensus        11 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~   90 (261)
                      ........+.+|.|.+++.+|+|.|.|.|.|..|.. ...+.|+|..+|++...... ..+..|+++.|.|.+.+.|.| 
T Consensus       285 ~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~-~~~~~v~v~a~P~w~~~~~d-~~~~~gs~v~~eC~a~g~P~p-  361 (1051)
T KOG3513|consen  285 RRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSA-THSGHVTVYAPPYWLQKPQD-TEADTGSNVTLECKASGKPNP-  361 (1051)
T ss_pred             cceeeeccccEEEecccCcCCCeEEEEEEecccccc-eeeEEEEEecCchhhcccce-eEecCCCCeEEEEEecCCCCC-
Confidence            344666677899999999999999999999999966 78899999999998877666 778899999999999999999 


Q ss_pred             eeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC--CCCcceEEee
Q psy11549         91 SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRNE  168 (261)
Q Consensus        91 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~--~p~~~~v~~~  168 (261)
                      ++.|.+|+..........++.+..+  .|.|.++...|+|.|.|.|.|..|..-..+.+.|....|..  .|....+...
T Consensus       362 ~v~WlkNg~pl~~~~r~~~~~i~~g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~  439 (1051)
T KOG3513|consen  362 TVKWLKNGEPLEPAERDPRYKIDDG--TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAV  439 (1051)
T ss_pred             ceEEeeCCeecCccCCCcceEEeCC--EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEE
Confidence            8999999853332223334555555  69999999999999999999999999887777776654443  3444445667


Q ss_pred             cCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .|..+.+.|.+   .+.|..-.-|.+........-.+....++.|.|.+++-+|.|.|  +|.|.|.+|..+....+.|+
T Consensus       440 ~g~~v~i~C~~---~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~Y--tC~A~N~~G~a~~~~~L~Vk  514 (1051)
T KOG3513|consen  440 VGGTVTIDCKP---FASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKY--TCVAENKLGKAESTGNLIVK  514 (1051)
T ss_pred             eCCeEEEeecc---CCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEE--EEEEEcccCccceEEEEEEe
Confidence            89999999997   56665533333433322111133344568999999999999999  99999999999888888776


Q ss_pred             e
Q psy11549        249 M  249 (261)
Q Consensus       249 ~  249 (261)
                      .
T Consensus       515 d  515 (1051)
T KOG3513|consen  515 D  515 (1051)
T ss_pred             c
Confidence            3

>KOG4221|consensus

Probab=99.95  E-value=1.7e-26  Score=192.61  Aligned_cols=242  Identities=17%  Similarity=0.253  Sum_probs=189.0

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~   80 (261)
                      +|||+.|.-++.+......++|.|++++.+|+|.|+|+|.|..... ...+.|+|..+|.+...+.. ....++..+.|.
T Consensus       272 lrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~~-l~A~e~~die~e  349 (1381)
T KOG4221|consen  272 LRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPTT-LVAHESMDIEFE  349 (1381)
T ss_pred             eeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCcc-eeeeeccceeEe
Confidence            5899999877666666778899999999999999999999976665 56789999999988877666 556679999999


Q ss_pred             EEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeC------
Q psy11549         81 CAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA------  154 (261)
Q Consensus        81 C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~------  154 (261)
                      |.+.+.|.+ .+.|+++++... .  ...+....... +.|..+...|.|.|.|.+.|..|.....+.+.+...      
T Consensus       350 c~~~g~p~p-~v~w~kNgd~~i-p--sdy~ki~~~~~-lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s  424 (1381)
T KOG4221|consen  350 CPVSGKPIP-TVRWYKNGDRII-P--SDYFKIVGGGN-LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASS  424 (1381)
T ss_pred             CCCCCCCcc-eEEEEecCcccC-c--ccceEecCCCC-cEEEEEecccchhhhhhhccCcccccchhhheeccCCccccc
Confidence            999999878 899999996433 2  33334444333 888999999999999999999998887655544432      


Q ss_pred             -CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        155 -GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       155 -~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                       ..|..|..+.+.......+.++|..+...+.++. |.|.|+...............+...++.+  |.+.+-|.|+|.|
T Consensus       425 ~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~n--l~p~t~Y~~rv~A  502 (1381)
T KOG4221|consen  425 DLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQN--LSPLTMYFFRVRA  502 (1381)
T ss_pred             CccccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeee--cccceeEEEEEec
Confidence             2344666766666778889999996655555644 88888777666544433333336777777  9999999999999


Q ss_pred             EcCCCcCCceeeeeeeecc
Q psy11549        233 VNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~~~  251 (261)
                      .|..|.+.+|..+.|..++
T Consensus       503 ~n~~g~g~sS~pLkV~t~p  521 (1381)
T KOG4221|consen  503 KNEAGSGESSAPLKVTTQP  521 (1381)
T ss_pred             cCcccCCccCCceEEecCC
Confidence            9999999999999998765

>KOG4194|consensus

Probab=99.93  E-value=2.2e-24  Score=169.15  Aligned_cols=210  Identities=17%  Similarity=0.231  Sum_probs=157.5

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      +.|.+.+|+..|.|.|+|.+.|..|...+..++|+|...|.+...+.. ++...|+.+.|.|.+.|.|.| .|.|-+.+.
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~d-ltl~tg~mArl~CaAtG~P~P-eIawqkdgg  651 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPED-LTLRTGQMARLECAATGHPRP-EIAWQKDGG  651 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccCccc-ceeecccceeeeeeccCCCCc-ceeehhcCC
Confidence            479999999999999999999999999899999999999999887776 888999999999999999999 899988774


Q ss_pred             cccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCC-cceEEeecCCeEEEEe
Q psy11549        100 GETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ-NCSVRNETTSSVHISC  177 (261)
Q Consensus       100 ~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~-~~~v~~~~~~~~~l~c  177 (261)
                       ..++. ...+..+-..+-.+.|.++..+|+|.|+|+|+|..|.....+.++|.-..-+..|. +..|  ..|+.+.|.|
T Consensus       652 -tdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V--~~get~vlqC  728 (873)
T KOG4194|consen  652 -TDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLV--VVGETLVLQC  728 (873)
T ss_pred             -CCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEE--EecceEEEEE
Confidence             33333 23344443334479999999999999999999999998886666555332233443 2333  3599999999


Q ss_pred             ecCCCCCCCe-EEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        178 TPGYDGGLPQ-TFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       178 ~~~~~~~~p~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      .+   ++.|. +-..|++..+.-...- .........+++.+..+++.|.|  +|...|..|.-
T Consensus       729 ~a---~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~y--Tcem~~~~~~~  787 (873)
T KOG4194|consen  729 LA---EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIY--TCEMSNTLGTE  787 (873)
T ss_pred             ec---CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceE--EEEEEeeccce
Confidence            97   44443 3334444433321111 23445567788888889999999  88888888843

>KOG4221|consensus

Probab=99.92  E-value=1.1e-23  Score=175.98  Aligned_cols=237  Identities=17%  Similarity=0.195  Sum_probs=172.6

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCc-----eeEEEeeCCC
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR-----IVIVGASRSE   75 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~-----~~~~~~~~g~   75 (261)
                      .||..||..++ +.+.+.++.|.|.+++.+|.|.|+|.+.+..-+..+..+.|+|...|......     .....+..|+
T Consensus       175 ~kn~~pl~~~~-r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~  253 (1381)
T KOG4221|consen  175 LKNDQPLPLDS-RVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGD  253 (1381)
T ss_pred             ecccccccCCC-cEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCC
Confidence            37888888666 79999999999999999999999999999877766888999998444322111     1225688999


Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCC
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG  155 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~  155 (261)
                      .+.|.|.+.+.|.| .+.|.+++.  .+..+..++...+. +.|.|.+++..|+|.|+|+|.|.......++.++|.  .
T Consensus       254 ~v~leCvvs~~p~p-~v~Wlrng~--~i~~ds~rivl~g~-~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~--a  327 (1381)
T KOG4221|consen  254 DVVLECVVSGVPKP-SVKWLRNGE--KISVDSYRIVLVGG-SSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL--A  327 (1381)
T ss_pred             cEEEEEEecCCCCC-ceEEeeCCe--eeeecceEEEEecc-cceEEeccccccCceEEEEecCCCcccccceEEEEE--c
Confidence            99999999999999 899999774  44455555555433 369999999999999999999965555554455444  4


Q ss_pred             CCC-CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeC-CccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        156 KPQ-PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSA-SDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       156 ~p~-~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      +|. .+....+....+..+.+.|..  .+. |..-..||++. ...+.++........ +.|..+-+.+.+.|  +|.|.
T Consensus       328 ~P~~~~~p~~l~A~e~~die~ec~~--~g~-p~p~v~w~kNgd~~ipsdy~ki~~~~~-lrIlgi~~sdeg~y--Qcvae  401 (1381)
T KOG4221|consen  328 PPGFTKAPTTLVAHESMDIEFECPV--SGK-PIPTVRWYKNGDRIIPSDYFKIVGGGN-LRILGIVKSDEGFY--QCVAE  401 (1381)
T ss_pred             CCCCCCCCcceeeeeccceeEeCCC--CCC-CcceEEEEecCcccCcccceEecCCCC-cEEEEEecccchhh--hhhhc
Confidence            554 333334444558888888886  444 76655555553 333445544433323 77777778999999  99999


Q ss_pred             cCCCcCCceeeeeeeec
Q psy11549        234 NAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       234 N~~G~~~~s~~~~~~~~  250 (261)
                      |.+|.......+++..+
T Consensus       402 n~~G~a~a~a~l~vv~~  418 (1381)
T KOG4221|consen  402 NDAGSAQAAAQLEVVPQ  418 (1381)
T ss_pred             cCcccccchhhheeccC
Confidence            99998877777765444

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.91  E-value=1.2e-21  Score=151.15  Aligned_cols=207  Identities=12%  Similarity=0.179  Sum_probs=130.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec--eeecCceeEEEeeCCCcEEEEEEE-----eeCCCCcee
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGASRSESVDIHCAV-----EADPPARSF   92 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p--~~~~~~~~~~~~~~g~~~~l~C~~-----~~~~~~~~~   92 (261)
                      ..|.|.++..+|+|.|+|.+.|..+.. +.++.|+|....  .+.... ....+.+|..+.+.|..     .+.+++ ++
T Consensus        82 ~~l~i~~~~~~DsG~Y~C~a~N~~g~~-~~s~~L~V~~~~~~~~~~~~-~~~~~~~g~~~~i~C~~~~~~~~~~~~~-~i  158 (326)
T PHA02785         82 SNMLILNPTQSDSGIYICITKNETYCD-MMSLNLTIVSVSESNIDLIS-YPQIVNERSTGEMVCPNINAFIASNVNA-DI  158 (326)
T ss_pred             ceEEEcccCcccCeEEEEEEECCCcce-EEEEEEEEEecCCCccceee-ccceecccCcEEEECCChhhcccCCCCc-eE
Confidence            359999999999999999999998775 556777776432  121111 12446689999999972     345555 89


Q ss_pred             EEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee--EEEEEEeCCCCCCCC---cceEEe
Q psy11549         93 KWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP--CLYQVVLAGKPQPPQ---NCSVRN  167 (261)
Q Consensus        93 ~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~--~~~~v~~~~~p~~p~---~~~v~~  167 (261)
                      .|+++..     +...++.... ...|.|.++..+|.|.|+|.+.|..+.....  ..+.+.+..+..+|.   ...+..
T Consensus       159 ~W~k~~~-----~~~~r~~~~~-~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~  232 (326)
T PHA02785        159 IWSGHRR-----LRNKRLKQRT-PGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVT  232 (326)
T ss_pred             EEccCCc-----cCCcceEecC-CCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEe
Confidence            9986431     2233333322 2369999999999999999999987765432  233344433222221   112333


Q ss_pred             ecCCeEEEEeecCCCCCCCe--EEEEEEEeCCcc-------ceeEEEec---------CCCCcEEEcCCCCCCccEEEEE
Q psy11549        168 ETTSSVHISCTPGYDGGLPQ--TFTLELYSASDL-------NLLVNLTN---------LDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~--~~~~~~~~~~~~-------~~~~~~~~---------~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      ..|+.++|.|.+  .++.+.  ...+|+++...-       ........         .....|.|.+++.+|.|.|  +
T Consensus       233 ~~G~~v~L~C~a--~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y--~  308 (326)
T PHA02785        233 SIGSNLTIACRV--SLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTF--T  308 (326)
T ss_pred             cCCCcEEEEEEE--ECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeee--E
Confidence            569999999998  333322  234444442210       00111111         0135789999999999999  9


Q ss_pred             EEEEcCCCcC
Q psy11549        230 ISGVNAKGRS  239 (261)
Q Consensus       230 ~~a~N~~G~~  239 (261)
                      |.|.|..|..
T Consensus       309 C~A~n~~~~~  318 (326)
T PHA02785        309 CMAFTIPSIS  318 (326)
T ss_pred             EEEEeccCce
Confidence            9999988644

>KOG4222|consensus

Probab=99.89  E-value=5e-22  Score=165.38  Aligned_cols=233  Identities=23%  Similarity=0.342  Sum_probs=178.0

Q ss_pred             CCCCeecc-CCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549          1 MAGGIPLA-HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         1 ~~ng~~l~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      .|||++|. ....++...+++.|.|.++.+.|+|.|.|.+.|..|...+..++|.|.++|.+...... ..+..|..+.+
T Consensus       167 ~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~-~~v~~g~~~~f  245 (1281)
T KOG4222|consen  167 VKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKD-LAVLVGAAAEF  245 (1281)
T ss_pred             ecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCcccccccc-ceeeccccccc
Confidence            48999996 34456667899999999999999999999999999998889999999999998877766 77889999999


Q ss_pred             EEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC-
Q psy11549         80 HCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ-  158 (261)
Q Consensus        80 ~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~-  158 (261)
                      .|.+.+.|.| ++.|.+.+.    .+...++.+......+.|.++...|.|.|.|.+.|..|.....+.++|.  .+|. 
T Consensus       246 ~c~v~GdP~P-~Vrwkk~~~----~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~--apP~f  318 (1281)
T KOG4222|consen  246 DCRVGGDPQP-TVRWKKDDP----SLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQ--APPSF  318 (1281)
T ss_pred             ccccCCCCCC-ceeeeccCC----CCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEe--cCccc
Confidence            9999999999 899987542    2344555554444579999999999999999999999998886666655  5664 


Q ss_pred             --CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--------EEecCCCCcEEEcCCCCCCccEEEE
Q psy11549        159 --PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--------NLTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       159 --~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                        .|.+..+  ..+..+++.|..   .+.|..-++|.+........+        .........++|.+++-.+.|.|  
T Consensus       319 ~kkp~dq~v--~lg~~vt~pc~~---~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Y--  391 (1281)
T KOG4222|consen  319 GKKPRDQKV--ALGGTVTFPCET---LGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYY--  391 (1281)
T ss_pred             ccccCcccc--ccCceEEeeeec---CCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceE--
Confidence              4444444  348999999997   444544444444432221111        11222345899999999999999  


Q ss_pred             EEEEEcCCCcCCceeeeeee
Q psy11549        229 VISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~~~  248 (261)
                      -|...|.+|.+.....++++
T Consensus       392 vcq~~~~~~ss~~~a~~~qt  411 (1281)
T KOG4222|consen  392 VCQTQTSAGSSLTKAYLEQT  411 (1281)
T ss_pred             eecccccccccccceeEEEE
Confidence            89999999977766666554

>KOG4222|consensus

Probab=99.85  E-value=6e-20  Score=153.22  Aligned_cols=240  Identities=20%  Similarity=0.189  Sum_probs=173.3

Q ss_pred             CCCCeecc-CC-CCceEEEECCeEEEccCC-----CCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeC
Q psy11549          1 MAGGIPLA-HN-TSARIILSNQSLVLQKVS-----RQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~-~~-~~~~~~~~~~~L~i~~~~-----~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~   73 (261)
                      ||||.... .. .+-+..+.+++|.+..+-     ..|.|.|+|.|.|..|...++.+.|.|...+.-.......+.+..
T Consensus        66 ~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~  145 (1281)
T KOG4222|consen   66 YKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAV  145 (1281)
T ss_pred             ccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccc
Confidence            68886543 22 344677788888887652     249999999999999998888889988866654433333377889


Q ss_pred             CCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         74 SESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        74 g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      |+.+.|.|.-... |.| .+.|.++++...+........+.++  .|.|.++...|.|.|.|.++|..|..... ..++.
T Consensus       146 ge~avlEcgpP~ghpep-tvSw~Kdg~pl~~~~~~~~~lisgG--~LlIsnvrksD~GtY~CVatNmvG~ReS~-~A~ls  221 (1281)
T KOG4222|consen  146 GEEAVLECGPPRGHPEP-TVSWVKDGKPLDHYDVPIIALISGG--NLLISNVRKSDEGTYACVATNMVGERESI-PARLS  221 (1281)
T ss_pred             cceeEEeccCCCCCCCC-cceeecCCCccccccceeEEEecCC--cEEEeccccCCCceeeeeecccccccccc-cceee
Confidence            9999999976654 446 8999998864432222223334544  69999999999999999999999876653 55566


Q ss_pred             eCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcccee-EEEecCCCCcEEEcCCCCCCccEEEE
Q psy11549        153 LAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL-VNLTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       153 ~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      +..+|.   +|.++.+..  +..+.+.|.+   ++.|..-++|.+.....+.. ..+. ..+..+.|.++.-.+.|.|  
T Consensus       222 v~e~P~f~~rp~~~~v~~--g~~~~f~c~v---~GdP~P~Vrwkk~~~~~P~~ry~i~-~d~qtl~i~r~tp~deg~y--  293 (1281)
T KOG4222|consen  222 VQEKPWFWKRPKDLAVLV--GAAAEFDCRV---GGDPQPTVRWKKDDPSLPRSRYSIL-DDTQTLRIDRVTPTDEGTY--  293 (1281)
T ss_pred             eccCCccccccccceeec--cccccccccc---CCCCCCceeeeccCCCCCccceeee-eccccccccccCCCcccce--
Confidence            777775   666666643  7779999997   67777666665544333322 2222 2336678888666688999  


Q ss_pred             EEEEEcCCCcCCceeeeeeeeccc
Q psy11549        229 VISGVNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~~~~~~~  252 (261)
                      -|.|.|.+|.-+++..+.|..+..
T Consensus       294 ~C~a~n~vG~l~asa~ltV~apP~  317 (1281)
T KOG4222|consen  294 VCPAENLVGGLEASATLTVQAPPS  317 (1281)
T ss_pred             eeeccccccccccccceEEecCcc
Confidence            999999999999999999985543

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.77  E-value=2.3e-17  Score=120.03  Aligned_cols=111  Identities=16%  Similarity=0.233  Sum_probs=83.7

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeC-----CCCcee
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEAD-----PPARSF   92 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-----~~~~~~   92 (261)
                      ++++|.|.+++.+|+|.|+|+|.|..+.. ...+.|.|..++      . ...+..|+.+.|.|.+.+.     |.| ++
T Consensus        96 r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~~------~-~~~~~~G~~v~L~C~~~~~~~~~~p~p-~I  166 (227)
T PHA02826         96 RSENLWIGNVINIDEGIYICTISSGNICE-ESTIRLTFDSGT------I-NYQFNSGKDSKLHCYGTDGISSTFKDY-TL  166 (227)
T ss_pred             CCCeEEECCCChHHCEEEEEEEEECCcce-EEEEEEEEecCC------c-cceEecCCCEEEEeeCCCCccccCCCc-eE
Confidence            46799999999999999999999987665 556777774221      1 1456789999999998643     345 89


Q ss_pred             EEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         93 KWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        93 ~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .|++++..  +. ...++........|.|.++..+|+|.|+|.|....
T Consensus       167 ~WyKng~~--l~-~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        167 TWYKNGNI--VL-YTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EEEECCEE--CC-CCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            99998743  32 22344444444579999999999999999999864

>KOG4194|consensus

Probab=99.72  E-value=5.7e-16  Score=122.56  Aligned_cols=138  Identities=20%  Similarity=0.312  Sum_probs=108.4

Q ss_pred             CCee-ccCCCCceEEE--ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549          3 GGIP-LAHNTSARIIL--SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         3 ng~~-l~~~~~~~~~~--~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      +|.+ .+....|++.+  .+.-+.|.+++.+|+|.|+|+|.|..|+. +..++|+|.+.|.+..+... ..+..|+++.|
T Consensus       649 dggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~e~p~f~~PL~~-~~V~~get~vl  726 (873)
T KOG4194|consen  649 DGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVLETPSFSIPLED-QLVVVGETLVL  726 (873)
T ss_pred             cCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEecCCcccccccc-eEEEecceEEE
Confidence            4444 44444444443  45689999999999999999999999998 78899999999998877766 77889999999


Q ss_pred             EEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         80 HCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        80 ~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .|.+.+.|+.+++.|++.++...  . ..+.........+.+.+...+|+|.|+|.+.+..|....
T Consensus       727 qC~a~~~~a~pr~~W~k~d~pil--~-t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~  789 (873)
T KOG4194|consen  727 QCLAEGAPADPRLEWFKEDKPIL--I-TERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERI  789 (873)
T ss_pred             EEecCCCCCCccccccCCCCceE--E-eecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceee
Confidence            99999999833899998764322  2 223334445557899999999999999999998876655

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.70  E-value=1.4e-15  Score=117.56  Aligned_cols=131  Identities=25%  Similarity=0.319  Sum_probs=90.0

Q ss_pred             CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcce---eeeEEEEEE---eeceeecCceeEEEeeCCCcEEEEEEEee
Q psy11549         12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT---SNQLKLRVK---YAPICKSDRIVIVGASRSESVDIHCAVEA   85 (261)
Q Consensus        12 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~---s~~~~l~V~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~   85 (261)
                      .+.....++.|.|.+++.+|+|.|+|.+.|..+...   +..+.|.|.   .+|.+..+ .. ..+..|+.+.|.|.+.+
T Consensus       169 ~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p-~~-~~~~~G~~v~L~C~a~g  246 (326)
T PHA02785        169 KRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLP-EG-VVTSIGSNLTIACRVSL  246 (326)
T ss_pred             cceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCC-Cc-EEecCCCcEEEEEEEEC
Confidence            344445567999999999999999999999877642   234556664   23433333 22 56778999999999998


Q ss_pred             CCCC--ceeEEEEcCCccccc--cCCceEEeCC----------ceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         86 DPPA--RSFKWKFNNSGETLD--VGSERFSSGS----------RGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        86 ~~~~--~~~~W~~~~~~~~~~--~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      .|++  ..+.|++++......  ....++....          ....|.|.++..+|.|.|+|.|.|..+...
T Consensus       247 ~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~  319 (326)
T PHA02785        247 RPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK  319 (326)
T ss_pred             CCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence            8763  379999987421110  0111221111          134799999999999999999999875443

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.68  E-value=1.2e-15  Score=96.69  Aligned_cols=87  Identities=21%  Similarity=0.409  Sum_probs=69.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC-CceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG-SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      +.+..|+.+.|.|.+.|.|++ ++.|++++..  +... ..++......+.|.|.++..+|+|.|+|.|.|..|....  
T Consensus        10 ~~v~~G~~v~l~C~~~G~p~p-~v~W~kdg~~--l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~--   84 (98)
T cd05762          10 MKVRAGESVELFCKVTGTQPI-TCTWMKFRKQ--IQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQA--   84 (98)
T ss_pred             EEEECCCEEEEEEEEcccCCC-ceEEEECCEE--ecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCceeE--
Confidence            678899999999999999988 8999998742  3222 223333455678999999999999999999999999888  


Q ss_pred             EEEEEeCCCCCCC
Q psy11549        148 LYQVVLAGKPQPP  160 (261)
Q Consensus       148 ~~~v~~~~~p~~p  160 (261)
                      .+.|.|.++|.+|
T Consensus        85 ~~~l~V~~~P~pP   97 (98)
T cd05762          85 QVNLTVVDKPDPP   97 (98)
T ss_pred             EEEEEEecCCCCC
Confidence            5566666888777

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.63  E-value=1.4e-14  Score=98.45  Aligned_cols=118  Identities=20%  Similarity=0.300  Sum_probs=81.3

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCC-ceeEEEEcCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPA-RSFKWKFNNS   99 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~~~~~   99 (261)
                      +|+|.+++.+|+|.|+|.+.+..+.. ...++|.|..+|.+...... .....|..+.|.|.+.+..++ .++.|++++.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~-~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~   79 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEK-LVSMIEEPQTLICHIAGYYPLDVQVEWTREPP   79 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCC-ceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence            79999999999999999998887775 67789999988877544333 333478899999999997553 5899999874


Q ss_pred             ccccc---cCCce---EEe--CCc---eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549        100 GETLD---VGSER---FSS--GSR---GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus       100 ~~~~~---~~~~~---~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .....   .....   ...  ++.   .+.|.+.....++...|+|.+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          80 GDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            31110   01110   111  111   2356665555555679999998753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.61  E-value=1e-13  Score=101.07  Aligned_cols=158  Identities=11%  Similarity=0.113  Sum_probs=97.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCC----------CceeEEEEcCCccccccCCce--------EEeCCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADPP----------ARSFKWKFNNSGETLDVGSER--------FSSGSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~----------~~~~~W~~~~~~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+.+|+++.|.|.+.+.+.          ..++.|++.+...-....+.+        .........|.|.++..+|+|
T Consensus        32 ~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG  111 (227)
T PHA02826         32 VYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEG  111 (227)
T ss_pred             EEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCE
Confidence            66789999999999866331          127999987531101000010        011112347999999999999


Q ss_pred             EEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCC--CCCCCeEEEEEEEeCCccce--eEEEe
Q psy11549        131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGY--DGGLPQTFTLELYSASDLNL--LVNLT  206 (261)
Q Consensus       131 ~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~--~~~~p~~~~~~~~~~~~~~~--~~~~~  206 (261)
                      .|+|.|.|..+.....  +.+.|..+   +....+  ..|+.+.|.|.+..  ..+.|..-+.|+++......  .....
T Consensus       112 ~Y~C~a~N~~~~~~~~--i~L~V~~~---~~~~~~--~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~  184 (227)
T PHA02826        112 IYICTISSGNICEEST--IRLTFDSG---TINYQF--NSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLR  184 (227)
T ss_pred             EEEEEEEECCcceEEE--EEEEEecC---CccceE--ecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEe
Confidence            9999999987765554  34444222   222333  45999999998621  11234344455555432211  12222


Q ss_pred             cCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        207 NLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       207 ~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                       .....|.|.+++.+|+|.|  +|.|....
T Consensus       185 -~~~~~L~I~~V~~~DsG~Y--tC~a~~~~  211 (227)
T PHA02826        185 -NNNSTLVIKSATHDDSGIY--TCNLRFNK  211 (227)
T ss_pred             -CCCCEEEECcCCHHhCEEE--EEEEEEeE
Confidence             2346899999999999999  88887654

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.57  E-value=6.3e-14  Score=87.10  Aligned_cols=82  Identities=22%  Similarity=0.476  Sum_probs=61.6

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeC------CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG------SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      |+.+.|.|.+.+.|++ .+.|++++.  .+.....++...      ...+.|.|.++..+|+|.|+|.|.|..|....  
T Consensus         1 g~~~~l~C~~~g~p~~-~i~W~k~~~--~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~--   75 (88)
T cd05735           1 GQKKEMSCTAHGEKPI-IVRWEKEDR--IINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRG--   75 (88)
T ss_pred             CCeEEEEEEEECCCCC-EEEEeeCCE--ECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceE--
Confidence            7889999999999877 899999774  232222233221      12357999999999999999999999998887  


Q ss_pred             EEEEEeCCCCCCC
Q psy11549        148 LYQVVLAGKPQPP  160 (261)
Q Consensus       148 ~~~v~~~~~p~~p  160 (261)
                      .+.+.|..+|.+|
T Consensus        76 ~~~L~V~~~P~~P   88 (88)
T cd05735          76 IIQLTVQEPPDPP   88 (88)
T ss_pred             EEEEEEeCCCCCC
Confidence            4555666777765

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.56  E-value=1.6e-13  Score=84.83  Aligned_cols=77  Identities=12%  Similarity=0.226  Sum_probs=60.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +.+..|+.+.|.|.+.+.|.| .+.|++++..  +.....++.  .....+.|.|.++..+|+|.|+|.|.|..|.....
T Consensus         5 ~~v~~G~~v~l~c~~~G~P~P-~v~W~k~~~~--i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~   81 (86)
T cd05894           5 IVVVAGNKLRLDVPISGEPAP-TVTWSRGDKA--FTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHAS   81 (86)
T ss_pred             EEEEcCCEEEEEeeEeecCCC-eEEEEECCEE--CccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEE
Confidence            567899999999999999999 8999998743  322222333  33445689999999999999999999999987764


Q ss_pred             EE
Q psy11549        147 CL  148 (261)
Q Consensus       147 ~~  148 (261)
                      ..
T Consensus        82 ~~   83 (86)
T cd05894          82 LF   83 (86)
T ss_pred             EE
Confidence            33

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.55  E-value=2.1e-13  Score=84.81  Aligned_cols=86  Identities=17%  Similarity=0.254  Sum_probs=63.7

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+...... ..+..|+.+.|.|.+.+.|.| .+.|++++..  +. ...++...+  ..|.|.++..+|+|.|+|.|.|
T Consensus         2 p~i~~~~~~-~~~~~G~~v~l~C~~~G~P~P-~v~W~k~~~~--~~-~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~A~N   74 (88)
T cd05851           2 ADINVKFKD-TYALKGQNVTLECFALGNPVP-VIRWRKILEP--MP-ATAEISMSG--AVLKIFNIQPEDEGTYECEAEN   74 (88)
T ss_pred             CceEEcccc-EEEeCCCcEEEEEEecccCCC-EEEEEECCcC--CC-CCCEEecCC--CEEEECcCChhhCEEEEEEEEc
Confidence            333333333 667899999999999999998 8999998742  21 122333332  3799999999999999999999


Q ss_pred             CCceEEeeEEEEE
Q psy11549        139 AIGTQVTPCLYQV  151 (261)
Q Consensus       139 ~~~~~~~~~~~~v  151 (261)
                      ..|.......+.|
T Consensus        75 ~~G~~~~~~~l~V   87 (88)
T cd05851          75 IKGKDKHQARVYV   87 (88)
T ss_pred             CCCceEEEEEEEE
Confidence            9998877555443

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.55  E-value=1.7e-13  Score=86.94  Aligned_cols=82  Identities=22%  Similarity=0.305  Sum_probs=61.5

Q ss_pred             EEEeeCCCcEEEEEEEee-CCCCceeEEEEcCCccccccCCceEEeCC------ceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         68 IVGASRSESVDIHCAVEA-DPPARSFKWKFNNSGETLDVGSERFSSGS------RGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+.+..|+++.|.|.+.+ .|+| .+.|++++.  .+...........      ..+.|.|..+..+|+|.|+|.|.|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p-~v~W~Kdg~--~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~   88 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPP-HINWTYDNR--TLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSD   88 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCC-ccEEEeCCe--eCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCC
Confidence            377889999999999999 6666 899999874  2322222222211      24689999999999999999999999


Q ss_pred             ceEEeeEEEEEE
Q psy11549        141 GTQVTPCLYQVV  152 (261)
Q Consensus       141 ~~~~~~~~~~v~  152 (261)
                      |.......+.|.
T Consensus        89 G~~~~t~~L~V~  100 (101)
T cd04975          89 ASKSLTFELYVN  100 (101)
T ss_pred             ccEEEEEEEEEE
Confidence            987775555443

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.52  E-value=4.8e-13  Score=84.77  Aligned_cols=81  Identities=25%  Similarity=0.458  Sum_probs=63.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.|.| .+.|++++..  +.....++......+.|.|.++..+|.|.|+|.|.|..|.......
T Consensus        13 ~~~~~G~~v~L~C~~~g~P~p-~v~W~k~g~~--~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (95)
T cd05730          13 ATANLGQSVTLACDADGFPEP-TMTWTKDGEP--IESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH   89 (95)
T ss_pred             eEEeCCCCEEEEEeccEeCCC-EEEEEECCEE--CcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            567899999999999999988 8999997742  2222234444444457999999999999999999999998877655


Q ss_pred             EEEE
Q psy11549        149 YQVV  152 (261)
Q Consensus       149 ~~v~  152 (261)
                      +.|.
T Consensus        90 L~V~   93 (95)
T cd05730          90 LKVF   93 (95)
T ss_pred             EEEE
Confidence            5554

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.51  E-value=5.1e-13  Score=83.97  Aligned_cols=75  Identities=19%  Similarity=0.331  Sum_probs=58.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC-CceEEeC-CceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG-SERFSSG-SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +.+.+|+++.|.|.+.+.|.| .+.|++++..  +... ...+... +....|.|.++..+|+|.|+|.|.|..|.....
T Consensus        11 v~v~~G~~v~L~C~v~G~P~p-~v~W~k~g~~--l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05737          11 VTIMEGKTLNLTCTVFGDPDP-EVSWLKNDQA--LALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVD   87 (92)
T ss_pred             EEEeCCCcEEEEEEEEecCCC-eEEEEECCEE--CccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEE
Confidence            678899999999999999988 8999998742  2222 2222222 334579999999999999999999999987763

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.50  E-value=2.5e-13  Score=81.69  Aligned_cols=73  Identities=29%  Similarity=0.434  Sum_probs=56.0

Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      +|+.+.|.|.+.+.|.| .+.|++++..  +... .++.... ...|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus         1 eG~~v~l~C~~~g~P~p-~i~W~k~g~~--~~~~-~~~~~~~-~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQP-VIAWTKGGSQ--LSVD-RRHLVLS-SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCC-EEEEEECCEE--CCCC-CCeEEcc-CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEe
Confidence            58899999999999998 8999997742  2222 2222222 23799999999999999999999999887754443

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.50  E-value=1e-12  Score=82.50  Aligned_cols=88  Identities=25%  Similarity=0.373  Sum_probs=66.7

Q ss_pred             eeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        60 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .+...+.. +.+..|+++.|.|.+.+.|.+ ++.|++++.. ........+......+.|.|.++..+|+|.|+|.+.|.
T Consensus         2 ~~~~~~~~-~~v~~G~~~~l~c~~~~~p~~-~v~W~~~~~~-l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen    2 VFTKKPKD-VTVKEGESVTLECEVSGNPPP-TVTWYKNGRP-LTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             EEEEESSE-EEEETTSEEEEEEEEEESSSS-EEEEEETTEE-EESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred             EEEEecCC-EEEeCCCEEEEEEEEEeCCCC-cccccccccc-eeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence            34444433 788899999999999999877 8999998632 22223334445557789999999999999999999999


Q ss_pred             CceEEeeEEEE
Q psy11549        140 IGTQVTPCLYQ  150 (261)
Q Consensus       140 ~~~~~~~~~~~  150 (261)
                      .|.......+.
T Consensus        79 ~g~~~~~~~l~   89 (90)
T PF07679_consen   79 SGEATASVNLT   89 (90)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CCEEEEEEEEE
Confidence            88877754443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.50  E-value=7.2e-13  Score=80.12  Aligned_cols=75  Identities=24%  Similarity=0.342  Sum_probs=56.1

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      |+.+.|.|.+.+.|.| ++.|++++..........++....  ..|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus         1 G~~v~l~C~~~G~P~p-~i~W~k~g~~i~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTP-NITWSINGAPIEGTDPDPRRHVSS--GALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCC-eEEEEECCEECCCCCCCceEEeeC--CEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6789999999999988 899999874221111122333332  36999999999999999999999998877544443

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.49  E-value=8.9e-13  Score=82.90  Aligned_cols=85  Identities=18%  Similarity=0.290  Sum_probs=63.9

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC-CceEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG-SERFSSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      +|.+...+.. ..+..|+.+.|.|.+.+.|.| .+.|++++.  .+... ...+......+.|.|.++..+|+|.|+|.|
T Consensus         3 ~~~~~~~p~~-~~~~~G~~~~L~C~~~g~P~p-~v~W~k~g~--~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   78 (92)
T cd05747           3 PATILTKPRS-LTVSEGESARFSCDVDGEPAP-TVTWMREGQ--IIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVV   78 (92)
T ss_pred             CCcccccCcc-EEEeCCCcEEEEEEEeecCCC-EEEEEECCE--ECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence            4555544444 778899999999999999998 899999864  22111 122223344568999999999999999999


Q ss_pred             EcCCceEEee
Q psy11549        137 QNAIGTQVTP  146 (261)
Q Consensus       137 ~~~~~~~~~~  146 (261)
                      .|..|.....
T Consensus        79 ~N~~G~~~~~   88 (92)
T cd05747          79 ENSEGKQEAQ   88 (92)
T ss_pred             EcCCCCEeEE
Confidence            9999987764

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.49  E-value=3.9e-13  Score=80.50  Aligned_cols=71  Identities=27%  Similarity=0.389  Sum_probs=54.3

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      +.|.|.+.+.|.| .+.|++++..  +.....++..   ......|.|.++..+|+|.|+|.|.|..|.....+.+.
T Consensus         1 v~l~C~v~G~P~P-~i~W~k~~~~--i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPPP-KIFWKRNNEM--VQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLD   74 (75)
T ss_pred             CEEEEEEEecCCC-eEEEEECCEE--CcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEe
Confidence            4799999999999 8999998743  3222334433   22234799999999999999999999999888765554

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.48  E-value=5.9e-13  Score=80.61  Aligned_cols=75  Identities=21%  Similarity=0.472  Sum_probs=57.0

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeC
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA  154 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~  154 (261)
                      ++|.|.+.+.|.| .+.|++++..  +......+........|.|.++..+|+|.|.|.|.|..|....+..+.|.+.
T Consensus         1 v~L~C~~~g~P~p-~v~W~k~g~~--l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRP-TYQWFRDGTP--LSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCC-cEEEEECCEE--CCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            4799999999988 8999998742  3222233333333457999999999999999999999998766557777653

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.48  E-value=9.8e-13  Score=85.12  Aligned_cols=97  Identities=27%  Similarity=0.547  Sum_probs=66.4

Q ss_pred             EeeceeecCceeE-EEe--eCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe------CCceeEEEEecCC-
Q psy11549         56 KYAPICKSDRIVI-VGA--SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS------GSRGSMLRYTPVT-  125 (261)
Q Consensus        56 ~~~p~~~~~~~~~-~~~--~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~-  125 (261)
                      .++|.+..++... +..  ..|..+.|.|.+.+.|++ .+.|++++.  .+.....++..      ....+.|.|.++. 
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p-~i~W~k~g~--~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~   78 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRV-QFRWAKNGV--PLDLGNPRYEETTEHTGTVHTSILTIINVSA   78 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCC-EEEEEECCE--ECCCCCCeEEEEeeccCccceeEEEECcCCc
Confidence            4566665444321 222  356899999999999988 899999874  23222333321      1123579999987 


Q ss_pred             CCcCeEEEEEEEcCCceEEeeEEEEEEeCCCC
Q psy11549        126 ELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP  157 (261)
Q Consensus       126 ~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p  157 (261)
                      .+|.|.|+|.|.|..|....  .+.+.+..+|
T Consensus        79 ~~D~G~Y~C~A~N~~G~~~~--~i~L~~~~~p  108 (109)
T cd05773          79 ALDYALFTCTAHNSLGEDSL--DIQLVSTSRP  108 (109)
T ss_pred             cCCCEEEEEEEEeCCccCcE--EEEEEecCCC
Confidence            58999999999999998766  5566665655

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.48  E-value=4.5e-13  Score=78.03  Aligned_cols=66  Identities=21%  Similarity=0.293  Sum_probs=52.7

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      +.|.|.+.+.|.| .+.|++++..  +.  .     ......|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus         1 ~~l~c~v~g~P~P-~v~W~kdg~~--l~--~-----~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPP-EFQWYKDGKL--IS--G-----KHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCC-EEEEEECCEE--Cc--c-----cCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            4789999999999 8999998742  21  1     1123479999999999999999999999987776666654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.47  E-value=1.1e-12  Score=83.44  Aligned_cols=80  Identities=21%  Similarity=0.360  Sum_probs=60.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc----CCceEEeC--CceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV----GSERFSSG--SRGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ..+.+|+.++|.|.+.+.|.| .+.|++...+..+..    ...++...  .....|.|.++..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~~G~~v~l~C~~~G~P~p-~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   89 (98)
T cd05870          11 ETTVENGAATLSCKAEGEPIP-EITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRIGG   89 (98)
T ss_pred             EEEcCCCcEEEEEecccCCCC-eEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccCCc
Confidence            667899999999999999988 899998643332211    12234332  23457999999999999999999999998


Q ss_pred             EEeeEEE
Q psy11549        143 QVTPCLY  149 (261)
Q Consensus       143 ~~~~~~~  149 (261)
                      ...+..+
T Consensus        90 ~~~~~~l   96 (98)
T cd05870          90 HQKSMYL   96 (98)
T ss_pred             ceeEEEE
Confidence            7764443

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.47  E-value=1e-12  Score=81.43  Aligned_cols=80  Identities=15%  Similarity=0.293  Sum_probs=58.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.|.| .+.|++++...........+........|.|.++..+|+|.|+|.|.|..|.......
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCC-EEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence            457789999999999999887 8999998743221111111222233446899999999999999999999998877443


Q ss_pred             E
Q psy11549        149 Y  149 (261)
Q Consensus       149 ~  149 (261)
                      +
T Consensus        83 l   83 (85)
T cd05857          83 L   83 (85)
T ss_pred             E
Confidence            3

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.47  E-value=1.5e-12  Score=82.80  Aligned_cols=81  Identities=23%  Similarity=0.226  Sum_probs=61.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeC-------CceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG-------SRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ..+..|+.+.|.|.+.+.|+| .+.|++++..  +......+...       ...+.|.|.++..+|+|.|+|.|.|..|
T Consensus        13 ~~~~~~~~~~l~~~v~g~P~P-~v~W~kdg~~--l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g   89 (101)
T cd05859          13 EFANLHEVKEFVVEVEAYPPP-QIRWLKDNRT--LIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA   89 (101)
T ss_pred             EEEecCCcEEEEEEEEEeCCC-ceEEEECCEE--CcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence            667889999999999999999 8999998743  22222221111       1235799999999999999999999999


Q ss_pred             eEEeeEEEEEE
Q psy11549        142 TQVTPCLYQVV  152 (261)
Q Consensus       142 ~~~~~~~~~v~  152 (261)
                      ....+..+.|.
T Consensus        90 ~~~~t~~l~V~  100 (101)
T cd05859          90 VKSYTFALQIQ  100 (101)
T ss_pred             eEEEEEEEEEE
Confidence            88775555543

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.47  E-value=6.5e-13  Score=79.65  Aligned_cols=71  Identities=24%  Similarity=0.301  Sum_probs=54.2

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      +.|.|.+.|.|.| .+.|++++..  +.....++....   ....|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus         1 v~l~C~v~G~P~P-~v~W~k~~~~--l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~   74 (75)
T cd05893           1 VRLECRVSGVPHP-QIFWKKENES--LTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLD   74 (75)
T ss_pred             CEEEEEEeEecCC-EEEEEECCEE--CCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEe
Confidence            4799999999999 8999998743  222233444321   223699999999999999999999999988865554

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.47  E-value=1.6e-12  Score=80.16  Aligned_cols=78  Identities=19%  Similarity=0.344  Sum_probs=56.4

Q ss_pred             CcEEEEEEEeeCCCC-ceeEEEEcCCccccccCCceE---EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         75 ESVDIHCAVEADPPA-RSFKWKFNNSGETLDVGSERF---SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        75 ~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      ++++|.|.+.+.|.| ..+.|++++..........++   ........|.|.++...|+|.|+|.|.|..|....++.+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999876 368999987432221112222   2223345899999999999999999999999888855554


Q ss_pred             EE
Q psy11549        151 VV  152 (261)
Q Consensus       151 v~  152 (261)
                      |.
T Consensus        81 V~   82 (85)
T cd05854          81 VR   82 (85)
T ss_pred             EE
Confidence            43

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.46  E-value=1.4e-12  Score=78.65  Aligned_cols=75  Identities=17%  Similarity=0.308  Sum_probs=55.9

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      |+.+.|.|.+.+.|.| ++.|++++...............+  ..|.|.++...|.|.|+|.|.|..|.....+.+.|
T Consensus         1 g~~~~l~C~a~G~P~P-~i~W~k~g~~i~~~~~~~~~~~~~--~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKP-SISWLTNGVPIEIAPTDPSRKVDG--DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCC-eEEEEECCEEccccCCCceEEecC--CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            6789999999999998 899999874321111111222332  36889999999999999999999999888655543

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.46  E-value=9.5e-13  Score=80.31  Aligned_cols=78  Identities=19%  Similarity=0.293  Sum_probs=57.5

Q ss_pred             CcEEEEEEEeeCC-CCceeEEEEcCCccccccCCceEEeC---CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         75 ESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSG---SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        75 ~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      +++.|.|.+.+.+ .+..+.|++++..........++...   .....|.|.++...|+|.|+|.|.|..+....++.+.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~   80 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI   80 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence            4689999998854 34489999998543322334455442   2334799999999999999999999999888866665


Q ss_pred             EE
Q psy11549        151 VV  152 (261)
Q Consensus       151 v~  152 (261)
                      |.
T Consensus        81 V~   82 (85)
T cd05853          81 VR   82 (85)
T ss_pred             Ee
Confidence            54

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.46  E-value=1.1e-12  Score=78.30  Aligned_cols=72  Identities=28%  Similarity=0.444  Sum_probs=56.6

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      |+.+.|.|.+.+.|.| .+.|++++.  .+ ....++..... ..|.|.++..+|.|.|+|.|.|..|....+..+.
T Consensus         1 G~~~~l~C~~~g~P~p-~v~W~k~~~--~l-~~~~r~~~~~~-g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKP-KFSWSKGTE--LL-VNNSRISIWDD-GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCC-EEEEEeCCE--ec-ccCCCEEEcCC-CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            6789999999999988 899999764  22 23345544332 3699999999999999999999999888865554

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.45  E-value=1.4e-12  Score=78.65  Aligned_cols=74  Identities=20%  Similarity=0.355  Sum_probs=53.9

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      +.|.|.+.+.|.| .+.|++++..........++........|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus         1 a~l~C~~~G~P~P-~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTP-QIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCC-EEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            4789999999999 8999998742111122233333333347999999999999999999999998777544443

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.44  E-value=6.1e-12  Score=78.43  Aligned_cols=77  Identities=23%  Similarity=0.382  Sum_probs=59.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.|.| .+.|++++....   .......  ....|.|.++..+|+|.|+|.+.|..|.......
T Consensus        11 ~~~~~g~~v~l~C~~~g~P~p-~v~W~k~~~~~~---~~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   84 (88)
T cd04968          11 TYALKGQNVTLECFALGNPVP-QIKWRKVDGSMP---SSAEISM--SGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGR   84 (88)
T ss_pred             eEEeCCCcEEEEEEeeEeCCC-EEEEEECCCcCC---CccEEEE--eCCEEEECCCCcccCEEEEEEEEECCCcEEEEEE
Confidence            557799999999999999988 899999764211   1122222  2347999999999999999999999998777555


Q ss_pred             EEE
Q psy11549        149 YQV  151 (261)
Q Consensus       149 ~~v  151 (261)
                      +.|
T Consensus        85 l~V   87 (88)
T cd04968          85 IYV   87 (88)
T ss_pred             EEE
Confidence            543

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.43  E-value=3e-12  Score=77.80  Aligned_cols=74  Identities=24%  Similarity=0.333  Sum_probs=56.3

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceE--EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF--SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      |+++.|.|.+.+.|.| .+.|++++..  +.. ..++  ........|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 G~~v~l~C~~~g~P~p-~v~W~~~~~~--~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVATGVPTP-IINWRLNWGH--VPD-SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEEEecCC-EEEEEECCeE--CCC-CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            6789999999999988 8999987642  211 2222  33444568999999999999999999999998766544443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.43  E-value=5.2e-12  Score=80.20  Aligned_cols=80  Identities=20%  Similarity=0.341  Sum_probs=58.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--cCCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--VGSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      ..+..|+.++|.|.+.+.|.| .+.|++++......  ....++..  ....+.|.|.++..+|+|.|+|.|.|..|...
T Consensus        12 ~~~~~g~~v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   90 (97)
T cd05869          12 TAMELEEQITLTCEASGDPIP-SITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCTASNTIGQDS   90 (97)
T ss_pred             eEEEcCCCEEEEEEeeEeCCC-EEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEEEecCCCCee
Confidence            334568999999999999988 89999976421110  01122222  22345799999999999999999999999887


Q ss_pred             eeEEE
Q psy11549        145 TPCLY  149 (261)
Q Consensus       145 ~~~~~  149 (261)
                      .+..+
T Consensus        91 ~~~~l   95 (97)
T cd05869          91 QSMYL   95 (97)
T ss_pred             EEEEE
Confidence            75444

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.43  E-value=5.1e-12  Score=79.10  Aligned_cols=78  Identities=15%  Similarity=0.243  Sum_probs=59.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCc-eEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      ..+..|+.+.|.|.+.+.|.| .+.|++++..  +..... ..........|.|.++..+|.|.|+|.|.|..|......
T Consensus        10 ~~v~~G~~v~l~C~~~G~P~p-~v~W~~~g~~--~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~   86 (90)
T cd04972          10 TVVYEGGTATIRCTAEGSPLP-KVEWIIAGLI--VIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSV   86 (90)
T ss_pred             EEEcCCCcEEEEEEEEEcCCC-eEEEEECCEE--ccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEE
Confidence            447899999999999999988 8999998742  211111 112233355899999999999999999999999877754


Q ss_pred             EE
Q psy11549        148 LY  149 (261)
Q Consensus       148 ~~  149 (261)
                      .+
T Consensus        87 ~L   88 (90)
T cd04972          87 QV   88 (90)
T ss_pred             EE
Confidence            43

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.43  E-value=4.2e-12  Score=79.24  Aligned_cols=71  Identities=23%  Similarity=0.381  Sum_probs=56.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +.+.+|++++|.|.+.+. .| .+.|++++..  +  ...++........|.|.++..+|+|.|.|.|.|..|....
T Consensus        13 ~~v~~g~~v~l~C~a~g~-~p-~i~W~kng~~--l--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S   83 (91)
T cd05740          13 QPPEDNQPVTLTCEAEGQ-AT-YIWWVNNGSL--L--VPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS   83 (91)
T ss_pred             cccccCCcEEEEEEeCCC-CC-EEEEEECCEE--C--CCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence            568899999999999999 66 8999998742  2  2223444344457999999999999999999999987544

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.42  E-value=6.1e-12  Score=79.19  Aligned_cols=80  Identities=23%  Similarity=0.249  Sum_probs=57.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCC-ceEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAI-GTQV  144 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~  144 (261)
                      ..+..|+.+.|.|.+.+.|.++++.|++++. ..+.....++..   ....+.|.|.++..+|+|.|+|.|.|.. |...
T Consensus        10 ~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g-~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~   88 (96)
T cd05865          10 GEISVGESKFFLCQVAGEAKDKDISWFSPNG-EKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE   88 (96)
T ss_pred             cEECCCCeEEEEEEEeCCCCCCEEEEECCCC-cCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence            4577899999999999998533899997332 222222323322   2234689999999999999999999986 6666


Q ss_pred             eeEEE
Q psy11549        145 TPCLY  149 (261)
Q Consensus       145 ~~~~~  149 (261)
                      .+..+
T Consensus        89 ~s~~l   93 (96)
T cd05865          89 ATVNV   93 (96)
T ss_pred             EEEEE
Confidence            64443

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.42  E-value=3.1e-12  Score=77.50  Aligned_cols=74  Identities=19%  Similarity=0.338  Sum_probs=55.0

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      |+.+.|.|.+.+.|.| .+.|++++..  +...............|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus         1 G~~~~l~C~~~g~P~p-~i~W~~~g~~--~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978           1 GETGRLDCEAEGIPQP-TITWRLNGVP--IEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             CCeEEEEEEceeeCCC-EEEEEECCEE--CCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence            6789999999999988 8999998742  211111111222234799999999999999999999999887754444

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.41  E-value=9.5e-12  Score=77.56  Aligned_cols=73  Identities=26%  Similarity=0.311  Sum_probs=55.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+..|+.+.|.|.+.+.|.  .+.|++++. ..+. ...++..  .+..+.|.|.++..+|+|.|+|.|.|..|....
T Consensus        10 ~~v~~G~~v~l~C~~~G~P~--~v~W~k~~g-~~~~-~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   84 (92)
T cd05866          10 VELSVGESKFFTCTAIGEPE--SIDWYNPQG-EKIV-SSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE   84 (92)
T ss_pred             eEEcCCCeEEEEEEEEEeCC--eEEEEeCCC-eEec-CCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEE
Confidence            56779999999999999775  799998643 2222 2233333  344568999999999999999999999887643

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.41  E-value=4.6e-12  Score=76.17  Aligned_cols=70  Identities=27%  Similarity=0.347  Sum_probs=53.2

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      +.|.|.+.+.|.| .+.|++++..  +.....++..   ......|.|.++..+|+|.|+|.|.|..|.....+.+
T Consensus         1 v~L~C~v~G~P~P-~v~W~k~~~~--i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   73 (75)
T cd05744           1 VRLECRVSAIPPP-QIFWKKNNEM--LTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL   73 (75)
T ss_pred             CEEEEEEeecCCC-eEEEEECCEE--CCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence            4799999999998 8999998743  2222233332   2233469999999999999999999999988775444

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.40  E-value=5.9e-12  Score=78.96  Aligned_cols=75  Identities=19%  Similarity=0.329  Sum_probs=57.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCc-eEEe-CCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSS-GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +.+.+|+.+.|.|.+.+.|.| .+.|++++..  +..... .... ......|.|.++..+|+|.|+|.|.|..|.....
T Consensus        11 v~v~eG~~v~L~C~v~g~P~p-~i~W~k~~~~--~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   87 (92)
T cd05891          11 VTIMEGKTLNLTCTVFGNPDP-EVIWFKNDQD--IELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVD   87 (92)
T ss_pred             EEEcCCCEEEEEEEEEEeCCC-eEEEEECCEE--CCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeE
Confidence            678899999999999999888 8999998742  222211 1222 2233479999999999999999999999988774

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.40  E-value=4.4e-12  Score=75.38  Aligned_cols=70  Identities=23%  Similarity=0.308  Sum_probs=53.5

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      +.|.|.+.+.|.| .+.|++++..  +.. ..++....  ..|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus         1 ~~l~c~v~g~P~p-~v~W~k~g~~--l~~-~~~~~~~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPP-EIQWYKNGKL--ISE-KNRTKKSG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCC-EEEEEECCEE--CCC-CCEEEcCC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            4689999999998 8999998742  222 23333333  479999999999999999999999887776555554

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.40  E-value=5.4e-12  Score=74.42  Aligned_cols=70  Identities=27%  Similarity=0.371  Sum_probs=53.5

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      +.|.|.+.+.|.| .+.|++++..  +.. ..++. .  ...|.|.++..+|+|.|+|.|.|..|.......+.+.|
T Consensus         1 ~~~~c~v~G~P~P-~v~W~k~g~~--l~~-~~~~~-~--~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~v   70 (70)
T cd05864           1 VKIPVKYYGYPPP-EVKWYKNGQL--IVL-NHTFK-R--GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLVV   70 (70)
T ss_pred             CEEEeEEEEeCCC-EEEEEECCEE--CCC-CCEEc-c--CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEEC
Confidence            3689999999999 8999998743  221 12221 1  23699999999999999999999999877766666643

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.39  E-value=7.7e-12  Score=75.26  Aligned_cols=71  Identities=14%  Similarity=0.244  Sum_probs=53.7

Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      .+.|.|.+.+.|.| .+.|++++.... ......+........|.|.++..+|+|.|+|.|.|..|....+..
T Consensus         1 ~~~l~c~~~G~P~p-~v~W~k~g~~l~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   71 (74)
T cd05748           1 SVRLEVPISGRPTP-TVTWSKDGKPLK-LSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATIN   71 (74)
T ss_pred             CEEEEeeEeeeCCC-eEEEEECCEEcC-CCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEE
Confidence            36899999999999 899999874321 111122233445678999999999999999999999998777433

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.39  E-value=6.7e-12  Score=75.25  Aligned_cols=71  Identities=25%  Similarity=0.351  Sum_probs=54.7

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      |+.+.|.|.+.+.|.| .+.|++++..  +. ...++..... ..|.|.++..+|+|.|+|.|.|..|....+..+
T Consensus         1 G~~v~L~C~~~g~P~p-~v~W~k~~~~--~~-~~~~~~~~~~-~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   71 (73)
T cd04969           1 GGDVIIECKPKAAPKP-TISWSKGTEL--LT-NSSRICIWPD-GSLEILNVTKSDEGKYTCFAENFFGKANSTGSL   71 (73)
T ss_pred             CCeEEEEEeeeEcCCC-EEEEEECCEE--cc-cCCCEEECCC-CeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence            6789999999999888 8999998742  21 2223333222 369999999999999999999999988875444

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.39  E-value=1.1e-11  Score=78.78  Aligned_cols=80  Identities=24%  Similarity=0.335  Sum_probs=59.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--cCCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--VGSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      ..+.+|+.+.|.|.+.+.|.| .+.|++++......  ....++..  ....+.|.|.++..+|+|.|+|.|.|..|...
T Consensus        11 ~~~~~g~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (96)
T cd05732          11 QTAVELEQITLTCEAEGDPIP-EITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGDQ   89 (96)
T ss_pred             eeEecCCcEEEEEEEeEcCCC-cEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCcE
Confidence            567799999999999999888 89999976321110  01122322  23346899999999999999999999999887


Q ss_pred             eeEEE
Q psy11549        145 TPCLY  149 (261)
Q Consensus       145 ~~~~~  149 (261)
                      .+..+
T Consensus        90 ~s~~l   94 (96)
T cd05732          90 QSMYL   94 (96)
T ss_pred             EEEEE
Confidence            65443

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.39  E-value=8.9e-12  Score=77.02  Aligned_cols=75  Identities=24%  Similarity=0.413  Sum_probs=59.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.|.| .+.|++++.  .+. ...++....  ..|.|.++..+|+|.|+|.|.|..|....+..
T Consensus         9 ~~~~~G~~~~l~C~~~g~p~p-~v~W~k~g~--~~~-~~~~~~~~~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05728           9 TEADIGSSLRWECKASGNPRP-AYRWLKNGQ--PLA-SENRIEVEA--GDLRITKLSLSDSGMYQCVAENKHGTIYASAE   82 (85)
T ss_pred             cEEcCCCcEEEEEEeeEeCCC-EEEEEECCE--ECC-CCCeEEEeC--CEEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence            567799999999999999988 899999874  222 222333333  36999999999999999999999998777544


Q ss_pred             E
Q psy11549        149 Y  149 (261)
Q Consensus       149 ~  149 (261)
                      +
T Consensus        83 l   83 (85)
T cd05728          83 L   83 (85)
T ss_pred             E
Confidence            4

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.38  E-value=1.1e-11  Score=73.72  Aligned_cols=70  Identities=23%  Similarity=0.347  Sum_probs=51.7

Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      .+.|.|.+.+.|.| .+.|++++..  +. ...++..... ..|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus         1 ~v~l~C~~~G~P~p-~v~W~k~g~~--~~-~~~~~~~~~~-~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTP-TVKWVKNGDM--VI-PSDYFKIVKE-HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCC-EEEEEECCeE--CC-CCCCEEEEec-CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEE
Confidence            47899999999998 8999998742  21 1222222111 2478889999999999999999999988755443

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.38  E-value=9.5e-12  Score=76.99  Aligned_cols=81  Identities=21%  Similarity=0.447  Sum_probs=55.6

Q ss_pred             CcEEEEEEEeeCCCC-ceeEEEEcCCccccccCCceE---EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         75 ESVDIHCAVEADPPA-RSFKWKFNNSGETLDVGSERF---SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        75 ~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      +.+.|.|.+.+.|.| ..+.|++++..........++   ........|.|.++...|+|.|+|.|.|..|....+..  
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~--   78 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD--   78 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE--
Confidence            468999999998875 357999987432221111111   11223457999999999999999999999988777544  


Q ss_pred             EEeCCCC
Q psy11549        151 VVLAGKP  157 (261)
Q Consensus       151 v~~~~~p  157 (261)
                      +.|..+|
T Consensus        79 l~V~~pP   85 (85)
T cd04970          79 LIVRGPP   85 (85)
T ss_pred             EEEECCC
Confidence            4444444

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.35  E-value=2.6e-11  Score=75.83  Aligned_cols=77  Identities=26%  Similarity=0.435  Sum_probs=57.2

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCcccc-----ccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETL-----DVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      |+.+.|.|.+.+.|.| .+.|++++.....     .....++..... ..|.|.++..+|+|.|+|.+.|..|.......
T Consensus         1 G~~v~L~C~~~g~P~p-~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~-~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   78 (90)
T cd05726           1 GRTVTFQCEATGNPQP-AIFWQKEGSQNLLFSYQPPQSSSRFSVSQT-GDLTITNVQRSDVGYYICQTLNVAGSILTKAY   78 (90)
T ss_pred             CCEEEEEEECCccCCC-EEEEEeCCCcceeecccCCCCCCeEEECCC-CeEEEeeCChhhCEEEEEEEEcCCCceEEEEE
Confidence            6789999999999988 8999997643211     012334444322 36999999999999999999999998877555


Q ss_pred             EEEE
Q psy11549        149 YQVV  152 (261)
Q Consensus       149 ~~v~  152 (261)
                      +.|.
T Consensus        79 l~V~   82 (90)
T cd05726          79 LEVT   82 (90)
T ss_pred             EEEe
Confidence            5444

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.35  E-value=1.5e-11  Score=73.14  Aligned_cols=68  Identities=21%  Similarity=0.329  Sum_probs=51.2

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      +.|.|.+.+.|.| .+.|++++..  +.....  ........|.|.++..+|+|.|+|.|.|..|.......+
T Consensus         1 ~~L~C~~~G~P~P-~v~W~k~~~~--~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05876           1 LVLECIAEGLPTP-EVHWDRIDGP--LSPNRT--KKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV   68 (71)
T ss_pred             CEEEEEeeEecCC-eEEEEECCcC--CCCCce--eEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence            4689999999999 8999998742  211111  222233479999999999999999999999987774443

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.34  E-value=1.7e-11  Score=72.39  Aligned_cols=70  Identities=16%  Similarity=0.087  Sum_probs=51.5

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      +.|.|.+.|.|+| ++.|++++.  .+......+...+  ..|.|.++..+|+|.|+|.|.+..........+++
T Consensus         1 ~~l~c~v~g~P~P-~v~W~kdg~--~l~~~~~~~~~~~--~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702           1 YRLTPKVKAFPAP-EVIWLKDGL--PAAEKCSRYHVDG--YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             CeEEeeEEEcCCC-eEEEEECCE--ECCCCCcEEEeCC--CEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            3689999999999 899999874  2222223444443  37999999999999999999998665555444444

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.34  E-value=2.9e-11  Score=77.47  Aligned_cols=84  Identities=23%  Similarity=0.343  Sum_probs=54.7

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---cCCceEEe-CCceeEEEEe--cCCCCcCeEE
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---VGSERFSS-GSRGSMLRYT--PVTELDYGTL  132 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~-~~~~~~l~i~--~~~~~d~g~y  132 (261)
                      |.+...+.. ..+..|+.+.|.|.+.+.|.| .+.|++++......   ........ .+....+.+.  .+..+|+|.|
T Consensus         2 P~i~~~p~~-~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           2 PRIVEHPSD-LIVSKGDPATLNCKAEGRPTP-TIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CeEEecCce-eEEcCCCeEEEEeeCCcCCCC-EEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            444444433 678899999999999999988 89999987432210   01111222 2222222332  2368999999


Q ss_pred             EEEEEcCCceEE
Q psy11549        133 SCAAQNAIGTQV  144 (261)
Q Consensus       133 ~C~~~~~~~~~~  144 (261)
                      +|.|.|..|...
T Consensus        80 ~C~a~N~~G~~~   91 (100)
T cd07693          80 VCVAHNSLGEAV   91 (100)
T ss_pred             EEEEEcccccee
Confidence            999999999843

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.34  E-value=2.1e-12  Score=78.78  Aligned_cols=58  Identities=19%  Similarity=0.265  Sum_probs=46.9

Q ss_pred             CCCCeeccC--CCCceEEE----ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec
Q psy11549          1 MAGGIPLAH--NTSARIIL----SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP   59 (261)
Q Consensus         1 ~~ng~~l~~--~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p   59 (261)
                      +|||++|..  +..++.+.    .++.|.|.+++..|+|.|+|.|.|..+.. +.++.|.|..||
T Consensus        22 ~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L~V~~pP   85 (85)
T cd05853          22 SFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADLIVRGPP   85 (85)
T ss_pred             EECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEEEEecCC
Confidence            589999963  23333332    45689999999999999999999999988 788999998776

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.33  E-value=1.7e-11  Score=73.13  Aligned_cols=68  Identities=22%  Similarity=0.363  Sum_probs=51.2

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      +.|.|.+.+.|.| .+.|++++..  +.  ..+.........|.|.++..+|+|.|+|.|.|..|.......+
T Consensus         1 v~l~C~~~g~P~p-~v~W~k~~~~--~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   68 (71)
T cd05731           1 LLLECIAEGLPTP-EISWIKIGGE--LP--ADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV   68 (71)
T ss_pred             CEEEEEeeEecCC-eEEEEECCeE--CC--CCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence            4789999999998 8999998642  21  1122222334479999999999999999999999987764443

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.33  E-value=3e-11  Score=74.32  Aligned_cols=73  Identities=19%  Similarity=0.297  Sum_probs=55.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +....|+++.|.|.+.+.|.| .+.|++++....  ... ..........|.|.++..+|+|.|+|.+.|..|....
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p-~i~W~k~~~~~~--~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   76 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRP-DITWLKDNKPLT--PTE-IGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINA   76 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCC-cEEEEECCcCCc--CCc-cceecCceEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence            446689999999999999888 799999875321  111 1122233457999999999999999999999987665

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.32  E-value=1.2e-11  Score=77.30  Aligned_cols=77  Identities=22%  Similarity=0.391  Sum_probs=54.7

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCC--ccccccCC-ceE---------EeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNS--GETLDVGS-ERF---------SSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~~~-~~~---------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      |+.+.|.|.+.+.|.| +|.|++++.  +..+.... ...         ........|.|.++..+|+|.|+|.|.|..|
T Consensus         1 G~~v~l~C~v~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd04974           1 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCcEEEEEEEeCCCCC-eEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence            6789999999999998 899998631  11111111 110         0112234799999999999999999999999


Q ss_pred             eEEeeEEEEE
Q psy11549        142 TQVTPCLYQV  151 (261)
Q Consensus       142 ~~~~~~~~~v  151 (261)
                      ....++.|.|
T Consensus        80 ~~~~sa~L~V   89 (90)
T cd04974          80 PSHHSAWLTV   89 (90)
T ss_pred             cccCCEEEEe
Confidence            8877655554

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.32  E-value=2.1e-11  Score=72.21  Aligned_cols=67  Identities=25%  Similarity=0.440  Sum_probs=50.7

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      ++|.|.+.+.|+| .+.|++++..  +  ...++... ....|.|.++..+|+|.|+|.|.|..|.......+
T Consensus         1 v~l~C~~~g~P~p-~v~W~k~~~~--~--~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   67 (69)
T cd05725           1 VEFQCEVGGDPVP-TVLWRKEDGE--L--PKGRAEIL-DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASL   67 (69)
T ss_pred             CEEEEECccCCCC-EEEEEECCcc--C--CCCcEEEe-eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEE
Confidence            4789999999988 8999998632  2  22223222 22369999999999999999999999987775444

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.31  E-value=4.5e-11  Score=74.23  Aligned_cols=73  Identities=21%  Similarity=0.400  Sum_probs=55.2

Q ss_pred             EEeeCCCcEEEEEEE-eeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAV-EADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+..|+++.|.|.+ .+.|.| .+.|++++..  +.....++.... ...|.|.++..+|+|.|+|.+.|..|....
T Consensus         6 ~~~~~G~~v~l~C~~~~g~p~p-~i~W~k~g~~--~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   79 (86)
T cd05724           6 TQVAVGEMAVLECSPPRGHPEP-TVSWRKDGQP--LNLDNERVRIVD-DGNLLIAEARKSDEGTYKCVATNMVGERES   79 (86)
T ss_pred             EEEeCCCCEEEEEECCCCCCCC-EEEEEECCEE--CCCCCCCEEEcc-CCEEEEeECCcccCEEEEEEEEeccCceee
Confidence            567799999999998 577777 8999998743  222233333322 347999999999999999999999887644

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.31  E-value=3.2e-11  Score=72.95  Aligned_cols=73  Identities=23%  Similarity=0.306  Sum_probs=54.7

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      +.|.|.+.+.|.| .+.|++++... ......++........|.|.++..+|.|.|+|.+.|..|.......+.|
T Consensus         1 ~~L~C~v~g~P~p-~v~W~k~~~~l-~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (76)
T cd05736           1 ASLRCHAEGIPLP-RLTWLKNGMDI-TPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFV   73 (76)
T ss_pred             CEeEeEeeecCCC-EEEEEECCEEC-CCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEE
Confidence            4689999999988 89999987432 1122233444444457999999999999999999999998887555544

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.31  E-value=2.4e-11  Score=71.87  Aligned_cols=67  Identities=25%  Similarity=0.497  Sum_probs=51.1

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      +.|.|.+.+.|.| .+.|++++.  .+. ...++.... ...|.|.++..+|+|.|+|.|.|..|....+..
T Consensus         1 v~L~C~~~g~P~p-~i~W~k~g~--~~~-~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   67 (69)
T cd05746           1 VQIPCSAQGDPEP-TITWNKDGV--QVT-ESGKFHISP-EGYLAIRDVGVADQGRYECVARNTIGYASVSMV   67 (69)
T ss_pred             CEeEecceEeCCC-EEEEEECCE--ECC-CCCCEEECC-CCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence            4799999999988 799999763  222 223333332 237999999999999999999999998777433

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.30  E-value=3.4e-11  Score=75.28  Aligned_cols=77  Identities=22%  Similarity=0.347  Sum_probs=54.4

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCC--ccccccCC-ceEE---------eCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNS--GETLDVGS-ERFS---------SGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~~~~~-~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      |+.+.|.|.+.+.|.| ++.|++...  +..+.... ....         .....+.|.|.++..+|+|.|+|.|.|..|
T Consensus         1 G~~v~L~C~~~g~P~P-~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G   79 (90)
T cd05858           1 GSTVEFVCKVYSDAQP-HIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG   79 (90)
T ss_pred             CCeEEEEEEEecCCCC-EEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence            6789999999999998 899998531  11111111 1111         111235799999999999999999999999


Q ss_pred             eEEeeEEEEE
Q psy11549        142 TQVTPCLYQV  151 (261)
Q Consensus       142 ~~~~~~~~~v  151 (261)
                      ....++.+.|
T Consensus        80 ~~~~~a~L~V   89 (90)
T cd05858          80 ISHHSAWLTV   89 (90)
T ss_pred             cccceEEEEE
Confidence            8877655543

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.30  E-value=6.9e-11  Score=75.18  Aligned_cols=86  Identities=20%  Similarity=0.308  Sum_probs=60.7

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeC------CceeEEEEecCCCC-cCe
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG------SRGSMLRYTPVTEL-DYG  130 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~-d~g  130 (261)
                      +|.+..+. . ..+..|+.+.|.|.+.+.|.|..+.|++++.... .....++...      ...+.|.|.++..+ |.|
T Consensus         2 pp~i~~~~-~-~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~-~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G   78 (98)
T cd05758           2 PPIITSEA-T-QYAILGDKGRVECFIFSTPPPDRIVWTWKENELE-SGSSGRYTVETDPSPGGVLSTLTISNTQESDFQT   78 (98)
T ss_pred             CCeEcCCC-c-EEEeCCCcEEEEEEEcccCCCCEeEEEECCEEcc-CCCCCCEEEEEecCCCceEEEEEECCccccccce
Confidence            44444333 2 4578999999999999998885699999874221 1112334322      22357999999994 589


Q ss_pred             EEEEEEEcCCceEEee
Q psy11549        131 TLSCAAQNAIGTQVTP  146 (261)
Q Consensus       131 ~y~C~~~~~~~~~~~~  146 (261)
                      .|+|.|.|..|.....
T Consensus        79 ~Y~C~A~N~~G~~~~~   94 (98)
T cd05758          79 SYNCTAWNSFGSGTAI   94 (98)
T ss_pred             eEEEEEEcCCCcccEE
Confidence            9999999999987664

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.29  E-value=4.3e-11  Score=71.97  Aligned_cols=72  Identities=21%  Similarity=0.373  Sum_probs=52.7

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      |+.+.|.|.+.+.|.| .+.|++++. ..+. ...++.... ...|.|..+..+|+|.|+|.|.|..|.......+
T Consensus         1 G~~~~l~C~~~g~P~p-~v~W~~~~~-~~~~-~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   72 (74)
T cd05764           1 GQRATLRCKARGDPEP-AIHWISPDG-KLIS-NSSRTLVYD-NGTLDILITTVKDTGSFTCIASNAAGEATATVEL   72 (74)
T ss_pred             CCeEEEEEEccCcCCC-EEEEEeCCC-EEec-CCCeEEEec-CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence            6789999999998888 899997543 2222 222222222 2369999999999999999999999987664333

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.29  E-value=1.1e-10  Score=73.39  Aligned_cols=69  Identities=22%  Similarity=0.401  Sum_probs=51.8

Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEe
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .|+.+.|.|.+.+.|.| ++.|++++.... .....++...+.  .|.|.++. .+|+|.|+|.|.|..|...+
T Consensus        18 ~g~~v~l~C~~~G~P~P-~i~W~k~g~~l~-~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          18 DEKKVILNCEARGNPVP-TYRWLRNGTEID-TESDYRYSLIDG--NLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             CCCEEEEEEEeeecCCC-EEEEEECCeECc-cCCCceEEeeCC--eEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            57899999999999998 899999874221 112233433332  68888875 69999999999999997754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.29  E-value=4.5e-11  Score=74.99  Aligned_cols=78  Identities=17%  Similarity=0.278  Sum_probs=57.2

Q ss_pred             EEeeCCCcEEEEEEEee-----CCCCceeEEEEcCCcccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         69 VGASRSESVDIHCAVEA-----DPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~-----~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ..+.+|+.+.|.|.+.+     .|.+ ++.|++++....... ...++...  ...|.|.++..+|+|.|+|.+.|..|.
T Consensus         9 ~~v~~G~~~~L~C~~~g~~~~~~p~~-~v~Wyk~~~~~~~~~~~~~r~~~~--~~~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           9 SYVLEGEPVVIKCPLFYSYIAQSPGL-NLTWYKSDGKTPIPTEERSRMHQQ--KDLLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEecCCCeEEECCCCCcccccCCCc-eEEEEEcCCCCcccccccceeeec--CCeEEEccCCcccCeEEEEEEcCCCcc
Confidence            45668999999999998     5666 899999874322211 12333332  247999999999999999999999888


Q ss_pred             EEeeEEE
Q psy11549        143 QVTPCLY  149 (261)
Q Consensus       143 ~~~~~~~  149 (261)
                      ......+
T Consensus        86 ~~~~~~L   92 (94)
T cd05756          86 MKVSISL   92 (94)
T ss_pred             EEEEEEE
Confidence            7764443

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.28  E-value=8.8e-11  Score=73.62  Aligned_cols=67  Identities=25%  Similarity=0.456  Sum_probs=51.2

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEe
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~  145 (261)
                      |..+.|.|.+.+.|.| ++.|++++..  +.....++...+  ..|.|.++. .+|+|.|.|.|.|..|....
T Consensus        19 ~~~v~l~C~a~G~P~P-~i~W~k~~~~--i~~~~~~~~~~~--g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   86 (93)
T cd05849          19 EGKVSVNCRARANPFP-IYKWRKNNLD--IDLTNDRYSMVG--GNLVINNPDKYKDAGRYVCIVSNIYGKVRS   86 (93)
T ss_pred             CCeEEEeCcCccCCCC-EEEEEECCEE--ccCCCCeEEEEC--CEEEECcCCcCCCCEEEEEEEEeCcceEEE
Confidence            4579999999999998 8999998742  322233444433  368998875 68999999999999987654

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.28  E-value=9.4e-11  Score=69.11  Aligned_cols=67  Identities=18%  Similarity=0.376  Sum_probs=49.7

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      |+++.|.|.+.+.|.| .+.|++++..  +. ...++..  ....|.|.++  .|+|.|+|.|.|..|....++.
T Consensus         1 G~~v~L~C~a~G~P~P-~v~W~k~g~~--l~-~~~~~~~--~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~   67 (69)
T cd05739           1 GGSVNLTCVAVGAPMP-YVKWMKGGEE--LT-KEDEMPV--GRNVLELTNI--YESANYTCVAISSLGMIEATAQ   67 (69)
T ss_pred             CCeEEEEEEeeecCCC-EEEEEECCEE--CC-Cccceec--CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEE
Confidence            6789999999999999 8999998742  21 1222222  2236888886  4789999999999998776543

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.27  E-value=2.1e-10  Score=72.26  Aligned_cols=69  Identities=29%  Similarity=0.523  Sum_probs=50.7

Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEe
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .|+.+.|.|.+.+.|.| .+.|++++..... ....++.....  .|.|.++. ..|.|.|.|.|.|..|....
T Consensus        18 ~g~~v~l~C~a~g~P~p-~i~W~~~g~~l~~-~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          18 PEEKVTLGCRARASPPA-TYRWKMNGTEIKF-APESRYTLVAG--NLVINNPQKARDAGSYQCLAINRCGTVVS   87 (94)
T ss_pred             CCCeEEEEeEceeCCCC-EEEEEECCEECcc-CCCceEEEECC--eEEEccCCccCcCEEEEEEEEcCcCcEEE
Confidence            35689999999999988 8999998743221 12233433332  58887755 59999999999999997655

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.27  E-value=1.2e-10  Score=70.80  Aligned_cols=70  Identities=17%  Similarity=0.349  Sum_probs=53.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+..|+.+.|.|.+.+. .+ .+.|++++..  +.. ..++...+.  .|.|.++..+|+|.|+|.+.|..|....
T Consensus         4 ~~~~~G~~v~l~C~~~~~-~~-~v~W~k~g~~--l~~-~~~~~~~~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~   73 (79)
T cd04973           4 YSAHPGDLLQLRCRLRDD-VQ-SINWTKDGVQ--LGE-NNRTRITGE--EVQIKDAVPRDSGLYACVTSSPSGSDTT   73 (79)
T ss_pred             EEecCCCCEEEEEEecCC-Cc-eEEEeeCCcC--CCC-CceEEEeCC--EEEECCCChhhCEEEEEEEeCCCCcccE
Confidence            456799999999999986 44 7999998742  322 233444333  6999999999999999999998877555

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.27  E-value=9.3e-11  Score=70.37  Aligned_cols=65  Identities=22%  Similarity=0.365  Sum_probs=48.7

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      ++|.|.+.+.|.| .+.|++++.... .....++.... ...|.|.++..+|+|.|+|.|.|..|...
T Consensus         1 a~l~C~~~G~P~p-~v~W~k~~~~~~-~~~~~~~~~~~-~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~   65 (74)
T cd05738           1 ATMLCAASGNPDP-EITWFKDFLPVD-TTSNGRIKQLR-SGALQIENSEESDQGKYECVATNSAGTRY   65 (74)
T ss_pred             CEEEEEEeEecCC-EEEEEECCEECc-cCCCCCEEEcC-CcEEEECCCChhhCEEEEEEEECCCCceE
Confidence            4799999999998 899999874211 11233444332 23699999999999999999999998753

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.26  E-value=8.6e-11  Score=71.54  Aligned_cols=67  Identities=18%  Similarity=0.274  Sum_probs=49.7

Q ss_pred             EEEEEEeeCCCCceeEEEEcCCccccccCCce-EEe-------CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         78 DIHCAVEADPPARSFKWKFNNSGETLDVGSER-FSS-------GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        78 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      .+.|.+.+.|.| ++.|++++..  +...... ...       ......|.|.++...|+|.|+|.|.|..|......
T Consensus         2 ~i~~~v~G~P~P-~v~W~k~g~~--i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~   76 (81)
T cd04971           2 CIPFTVRGNPKP-TLTWYHNGAV--LNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSI   76 (81)
T ss_pred             eEEEEeEeeCCC-cEEEEECCEE--CcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEE
Confidence            368999999999 8999998743  2222211 111       12345799999999999999999999999887743

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.26  E-value=8.9e-11  Score=70.60  Aligned_cols=66  Identities=18%  Similarity=0.252  Sum_probs=49.3

Q ss_pred             EEEEEEeeCCCCceeEEEEcCCccccccCCce---E-Ee--CCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         78 DIHCAVEADPPARSFKWKFNNSGETLDVGSER---F-SS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        78 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~---~-~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      .+.|.+.|.|.| +++|++++..  +......   + ..  ......|.|.++..+|+|.|+|.|.|..|....+
T Consensus         2 ~i~~~v~G~P~P-ti~W~kng~~--l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~   73 (79)
T cd05855           2 CIPFTVKGNPKP-TLQWFHEGAI--LNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKN   73 (79)
T ss_pred             eEEEEEeEeCCC-ceEEEECCEE--CCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceE
Confidence            478999999999 8999998842  2222111   0 11  1234579999999999999999999999987774

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.24  E-value=3.3e-10  Score=71.07  Aligned_cols=77  Identities=23%  Similarity=0.379  Sum_probs=59.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe------CCceeEEEEecCCCCc-CeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS------GSRGSMLRYTPVTELD-YGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~  141 (261)
                      ..+.+|+++.|.|.+.+.|+|..+.|..++.. .......+|.+      .+..+.|.|.++...| .|.|.|.|.|.+|
T Consensus        11 ~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~-i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G   89 (98)
T cd05898          11 QYAVRGERGKVKCFIGSTPPPDRIAWAWKENV-LESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG   89 (98)
T ss_pred             EEEeCCCcEEEEEEEccCCCCcEEEEEEcccc-ccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence            66789999999999999998878899887642 11122334433      2357799999998877 7899999999999


Q ss_pred             eEEee
Q psy11549        142 TQVTP  146 (261)
Q Consensus       142 ~~~~~  146 (261)
                      .....
T Consensus        90 ~d~~~   94 (98)
T cd05898          90 SGTAI   94 (98)
T ss_pred             cceEE
Confidence            88764

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.24  E-value=1.1e-10  Score=71.98  Aligned_cols=76  Identities=20%  Similarity=0.302  Sum_probs=53.8

Q ss_pred             CCcEEEEEEEeeC--CCCceeEEEEcCCccccccCC--ceE--EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         74 SESVDIHCAVEAD--PPARSFKWKFNNSGETLDVGS--ERF--SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        74 g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~~~~--~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      |+.+.|.|.+.+.  |.+ .+.|.+++.........  ...  ......+.|.|.++..+|+|.|+|.|.|..+....+.
T Consensus         1 Ge~~~L~C~~~g~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGV-DFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccE-EEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence            7889999999999  555 89998876432111110  011  0112345899999999999999999999998877755


Q ss_pred             EEE
Q psy11549        148 LYQ  150 (261)
Q Consensus       148 ~~~  150 (261)
                      .+.
T Consensus        80 ~v~   82 (84)
T cd05742          80 KVN   82 (84)
T ss_pred             EEE
Confidence            554

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.24  E-value=9.1e-11  Score=71.96  Aligned_cols=73  Identities=22%  Similarity=0.348  Sum_probs=52.4

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccc-ccc-CC---ceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGET-LDV-GS---ERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-~~~-~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      |+.+.|.|.+.+.|.| .+.|+++..+.. ... ..   ..+... ....|.|.++..+|+|.|+|.|.|..|.......
T Consensus         1 G~~v~l~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   78 (81)
T cd05765           1 GETASFHCDVTGRPPP-EITWEKQVHGKENLIMRPNHVRGNVVVT-NIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP   78 (81)
T ss_pred             CCcEEEEeeccccCCC-cEEEEecCCCCcceeecCCcccCCEEEc-cccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence            6789999999999988 899998743211 111 11   111111 2347999999999999999999999998776433

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.24  E-value=2.3e-10  Score=71.69  Aligned_cols=71  Identities=27%  Similarity=0.275  Sum_probs=51.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE-e-CCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS-S-GSRGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ..+..|+.+.|.|.+.+.| + .+.|++++. ..+........ . ....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus        10 ~~v~~G~~~~l~C~~~G~p-~-~i~W~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977          10 GEISVGESKFFLCQVIGEP-K-DISWFSPNG-EKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             EEECCCCeEEEEEEeEeeC-C-eEEEECCCC-CEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            5678999999999999985 4 899997432 22212122221 1 234568999999999999999999998654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.24  E-value=1.5e-10  Score=71.15  Aligned_cols=79  Identities=20%  Similarity=0.368  Sum_probs=53.3

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCC-ceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      |++++|.|.+.+.|.+ .+.|+++++........ .....  ....+.|.|.++..+|+|.|.|.+.+..+.......+.
T Consensus         1 Ge~~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVV-DFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCcc-EEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            7889999999998777 89999876422111111 01111  22256899999999999999999998765333333555


Q ss_pred             EEe
Q psy11549        151 VVL  153 (261)
Q Consensus       151 v~~  153 (261)
                      |.|
T Consensus        80 i~V   82 (84)
T cd05861          80 ITV   82 (84)
T ss_pred             EEE
Confidence            554

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.23  E-value=4.1e-11  Score=71.75  Aligned_cols=54  Identities=26%  Similarity=0.382  Sum_probs=42.6

Q ss_pred             CCCCeeccCCCCceEEEEC--C--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSN--Q--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~--~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||++|..+..+..+..+  +  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        18 ~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~V   75 (75)
T cd05892          18 KRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLDV   75 (75)
T ss_pred             EECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEeC
Confidence            5899999754454444433  2  79999999999999999999999998 55677765

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.22  E-value=1.3e-10  Score=70.08  Aligned_cols=69  Identities=17%  Similarity=0.365  Sum_probs=49.8

Q ss_pred             EEEEEEEee-CCCCceeEEEEcCCccccccCCce--EEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         77 VDIHCAVEA-DPPARSFKWKFNNSGETLDVGSER--FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        77 ~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +.|.|.+.+ .|.| .+.|++++...........  +........|.|.++..+|+|.|+|.|.|..|.....
T Consensus         1 ~~l~C~~~g~~P~p-~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   72 (75)
T cd05750           1 LVLKCEATSEYPSL-RFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVT   72 (75)
T ss_pred             CEEEEEccCCCCCc-eEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEE
Confidence            368999999 7776 8999998743221111111  2223345689999999999999999999999886653

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.21  E-value=6.7e-11  Score=71.39  Aligned_cols=59  Identities=22%  Similarity=0.370  Sum_probs=47.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ..+.+|+.++|.|.+.+.|.+..+.|++++..  +.         .....|.|.++ .+|+|.|+|.|.+.
T Consensus        10 ~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~--l~---------~~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752          10 TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKL--LE---------TTTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEeeCCCCEEEEEeCCCCCCCccEEEEECCEE--ee---------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence            56789999999999999876547999998742  21         11236899999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.21  E-value=3.7e-10  Score=71.40  Aligned_cols=74  Identities=32%  Similarity=0.511  Sum_probs=51.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecC-----CCCcCeEEEEEEEcC-Cce
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPV-----TELDYGTLSCAAQNA-IGT  142 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~~~-~~~  142 (261)
                      ..+..|+++.|.|.+.+.|.| .+.|++++..... ....++..... ..+.|.++     ...|.|.|+|.|.|. .|.
T Consensus         9 ~~~~~g~~v~l~C~v~g~P~p-~i~W~k~g~~l~~-~~~~~~~~~~~-~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~   85 (95)
T cd05722           9 IVAVRGGPVVLNCSAEGEPPP-KIEWKKDGVLLNL-VSDERRQQLPN-GSLLITSVVHSKHNKPDEGFYQCVAQNDSLGS   85 (95)
T ss_pred             eEEcCCCCEEEeeecccCCCC-EEEEEECCeECcc-ccCcceEEccC-CeEEEeeeeccCCCCCcCEEEEEEEECCccCc
Confidence            455689999999999999977 8999998743221 11111222111 23556555     588999999999999 887


Q ss_pred             EEe
Q psy11549        143 QVT  145 (261)
Q Consensus       143 ~~~  145 (261)
                      ..+
T Consensus        86 ~~s   88 (95)
T cd05722          86 IVS   88 (95)
T ss_pred             EEE
Confidence            643

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.21  E-value=2.6e-10  Score=68.84  Aligned_cols=68  Identities=22%  Similarity=0.415  Sum_probs=47.8

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCC----CcCeEEEEEEEcCCceEEee
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTE----LDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +.|.|.+.|.|.| ++.|++++..... .....+........|.|..+..    .|.|.|+|.|.|..|.....
T Consensus         1 ~~l~C~a~G~P~P-~i~W~k~g~~l~~-~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           1 IVIQCEAKGKPPP-SFSWTRNGTHFDI-DKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             CEEEeeCcccCCC-eEEEEECCeECCC-cCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            4789999999998 8999998743211 1223333333334677877764    37899999999999986653

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.21  E-value=1.5e-10  Score=70.07  Aligned_cols=67  Identities=22%  Similarity=0.427  Sum_probs=48.5

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCC----CcCeEEEEEEEcCCceEEe
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTE----LDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~  145 (261)
                      +.|.|.+.+.|.| .+.|++++..... ....++........|.|.++..    +|+|.|+|.|.|..|....
T Consensus         1 i~l~C~~~G~P~P-~v~W~k~g~~l~~-~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPP-TFSWTRNGTHFDP-EKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCC-eEEEEECCeECCC-CCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            4789999999998 8999998743211 1223344433345788888754    6899999999999997654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.20  E-value=5e-10  Score=69.34  Aligned_cols=77  Identities=14%  Similarity=0.284  Sum_probs=55.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +.+..|+.+.|.|.+.+.|.+ .+.|++++....................|.|.++..+|.|.|.|.+.|..|....+
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~   80 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRP-TITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHT   80 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCC-eEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEE
Confidence            456689999999999988877 79999976421111001111122334578999999999999999999998886663

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.19  E-value=3.6e-10  Score=68.22  Aligned_cols=68  Identities=25%  Similarity=0.389  Sum_probs=48.4

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC----CCcCeEEEEEEEcCCceEEee
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT----ELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +.|.|.+.|.|.| .+.|++++..... ....++........|.|..+.    .+|.|.|+|.|.|..|.....
T Consensus         1 ~~l~C~~~G~P~P-~v~W~k~g~~~~~-~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           1 IIIECEAKGNPVP-TFQWTRNGKFFNV-AKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             CEEEEeccccCCC-EEEEEECCEEccC-cCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            4789999999999 8999998742211 123344443334478888764    246999999999999976653

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.18  E-value=3.3e-10  Score=68.43  Aligned_cols=70  Identities=17%  Similarity=0.355  Sum_probs=48.5

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +.|.|.+.+.+++..+.|++++....... ...++.  .....+.|.|.++..+|+|.|+|.+.|..|....+
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~   73 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVT   73 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEE
Confidence            46899987644433899999875322111 111222  22345689999999999999999999999877664

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.17  E-value=9.3e-11  Score=70.29  Aligned_cols=54  Identities=30%  Similarity=0.379  Sum_probs=42.7

Q ss_pred             CCCCeeccCCCCceEEEECC----eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.+|..+..+.....++    +|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        18 ~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V   75 (75)
T cd05893          18 KKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLDV   75 (75)
T ss_pred             EECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEeC
Confidence            58899997554544444443    69999999999999999999999998 56677764

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.17  E-value=9.9e-11  Score=69.80  Aligned_cols=53  Identities=28%  Similarity=0.403  Sum_probs=43.7

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.+|.. +.+..+..+++|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        21 ~k~~~~l~~-~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~~   73 (73)
T cd05852          21 SKGTELLVN-NSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLSV   73 (73)
T ss_pred             EeCCEeccc-CCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEEC
Confidence            578888754 345666788999999999999999999999999998 55667654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.16  E-value=7e-10  Score=67.39  Aligned_cols=68  Identities=19%  Similarity=0.321  Sum_probs=51.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +.+..|+.+.|.|.+.|.|.|.+|.|++++..  +..   ..  ....+.|.|..+  .|.|.|.|.|.|..|....
T Consensus         8 ~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~--l~~---~~--~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s   75 (81)
T cd05749           8 LSVTANTPFNLTCQAVGPPEPVEILWWQGGSP--LGD---PP--APSPSVLNVPGL--NETSKFSCEAHNAKGVTTS   75 (81)
T ss_pred             eEEcCCCCEEEEEEeeeecCCeEEEEEECCEE--CCC---CC--CCCCCEEEEccc--cCCeEEEEEEEeccCcEEe
Confidence            67889999999999999998856999998742  211   11  122346888876  4789999999999986654

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.16  E-value=9.6e-11  Score=72.21  Aligned_cols=58  Identities=24%  Similarity=0.330  Sum_probs=44.7

Q ss_pred             CCCCeeccCCC--CceEE--E--ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec
Q psy11549          1 MAGGIPLAHNT--SARII--L--SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP   59 (261)
Q Consensus         1 ~~ng~~l~~~~--~~~~~--~--~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p   59 (261)
                      +|||++|..+.  .+..+  .  ..++|.|.+++..|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus        22 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L~V~~~P   85 (85)
T cd05854          22 SLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATLVVRGPP   85 (85)
T ss_pred             EECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEEEEECCC
Confidence            47898885322  22211  1  34699999999999999999999999988 678899998665

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.15  E-value=6.4e-11  Score=73.26  Aligned_cols=58  Identities=24%  Similarity=0.362  Sum_probs=44.8

Q ss_pred             CCCCeeccCCCC--c---e-EEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec
Q psy11549          1 MAGGIPLAHNTS--A---R-IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP   59 (261)
Q Consensus         1 ~~ng~~l~~~~~--~---~-~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p   59 (261)
                      +|||++|..+..  .   . ....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus        22 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~pP   85 (85)
T cd04970          22 SFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADLIVRGPP   85 (85)
T ss_pred             EECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEEEEECCC
Confidence            478998864322  1   1 12245789999999999999999999999887 678899998765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.15  E-value=4.9e-10  Score=68.22  Aligned_cols=67  Identities=25%  Similarity=0.429  Sum_probs=48.0

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCcccc-c----cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETL-D----VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~-~----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ++|.|.+.+.|.| .+.|++.+..... .    ....++.... ...|.|.++..+|+|.|.|.|.|..|....
T Consensus         1 v~l~C~~~G~P~P-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s   72 (79)
T cd05734           1 VTLNCSAEGYPPP-TIVWKHSKGRGHPQHTHTCCLAGRIQLLS-NGSLLIKHVLEEDSGYYLCKVSNDVGADAS   72 (79)
T ss_pred             CEeEeeCeEeCCC-EEEEEECCCccccccccccccCCCEEEec-CCeEEECcCCcccCEEEEEEEEeCCCCCCc
Confidence            5799999999998 8999986432111 0    0222333222 247999999999999999999999887643

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.13  E-value=1.4e-09  Score=66.69  Aligned_cols=65  Identities=18%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ..+..|+++.|.|.+.+ +.+ ++.|++++..  +.....++.....  .|.|.++..+|+|.|+|.+.+.
T Consensus         6 ~~v~~G~~v~L~C~~~~-~~~-~i~W~~ng~~--i~~~~~r~~~~~~--~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           6 RTFKLGNNAELKCSPKS-NLA-RVVWKFDGKV--LTPESAKYLLYRD--GLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             EEEECCCCEEEEEECCC-CCC-eEEEEECCEE--CCCCCceEEEECC--cEEEeCCCHHHCEEEEEEEEec
Confidence            56789999999999754 445 8999998853  3333344544443  5999999999999999999975

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.12  E-value=1.3e-09  Score=68.36  Aligned_cols=69  Identities=14%  Similarity=0.294  Sum_probs=51.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc-----ccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL-----DVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      +.+..|+++.|.|.+.+.|.+ .+.|++++.....     .....++..   ......|.|.++..+|.|.|+|.+..
T Consensus         7 ~tv~~G~tv~L~C~v~g~~~~-~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           7 ETVAVGGTVTLKCGVKEHDNS-SLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             EEEecCCcEEEEEEEeCCCCC-eEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            668899999999999998887 7999987642100     011223321   22346899999999999999999987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.12  E-value=2.2e-10  Score=68.77  Aligned_cols=56  Identities=21%  Similarity=0.369  Sum_probs=45.9

Q ss_pred             CCCCeeccC-CCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAH-NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||||.++.. ...+.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        18 ~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738          18 FKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             EECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            578888863 23455566678999999999999999999999999977788888773

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.11  E-value=3.7e-10  Score=70.14  Aligned_cols=59  Identities=22%  Similarity=0.373  Sum_probs=46.5

Q ss_pred             CCCCeeccCCCCceEEEE----C---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece
Q psy11549          1 MAGGIPLAHNTSARIILS----N---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI   60 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~----~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~   60 (261)
                      +|||.++..+.+++.+..    +   ++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.
T Consensus        21 ~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~L~V~~~P~   86 (88)
T cd05735          21 EKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGIIQLTVQEPPD   86 (88)
T ss_pred             eeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEEEEEEeCCCC
Confidence            478888865444444332    1   479999999999999999999999997 6788999987663

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.11  E-value=1.5e-09  Score=67.04  Aligned_cols=72  Identities=21%  Similarity=0.338  Sum_probs=54.3

Q ss_pred             EEeeCCCcEEEEEEEee-CCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         69 VGASRSESVDIHCAVEA-DPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      ..+..|++++|.|.+.+ .|.+ .+.|++++..  +  .... .  .....|.|.++..+|+|.|.|.+.|..|.....+
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~-~i~W~~~~~~--~--~~~~-~--~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~   82 (85)
T cd05754          11 QEVRPGADVSFICRAKSKSPAY-TLVWTRVGGG--L--PSRA-M--DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA   82 (85)
T ss_pred             eEEcCCCCEEEEEEcCCCCCCc-EEEEEECCCc--C--CCcc-c--ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence            56789999999999976 4444 8999998743  1  1111 1  1234799999999999999999999998877643


Q ss_pred             E
Q psy11549        148 L  148 (261)
Q Consensus       148 ~  148 (261)
                      .
T Consensus        83 ~   83 (85)
T cd05754          83 T   83 (85)
T ss_pred             E
Confidence            3

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.11  E-value=3.8e-10  Score=67.83  Aligned_cols=54  Identities=28%  Similarity=0.379  Sum_probs=42.3

Q ss_pred             CCCCeeccCCCCceEEEECC----eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~----~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||++|..+..+.....++    +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        18 ~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v   75 (75)
T cd05744          18 KKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLDV   75 (75)
T ss_pred             EECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEeC
Confidence            58999997554444444332    69999999999999999999999987 56677764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.11  E-value=1.5e-09  Score=67.72  Aligned_cols=80  Identities=23%  Similarity=0.260  Sum_probs=54.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      +.+..|+.+.|.|.+.+ |.+ .+.|++++....... ...++.....  .|.|.++..+|+|.|.|.+.+..+.. ...
T Consensus         6 ~~v~~g~~v~L~C~~~~-p~~-~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~~~~~~~-~~~   80 (89)
T cd04979           6 VTVVEGNSVFLECSPKS-NLA-SVVWLFQGGPLQRKEEPEERLLVTED--GLLIRSVSPADAGVYTCQSVEHGFKQ-TLA   80 (89)
T ss_pred             EEEECCCcEEEEEeCCC-CCc-eEEEEECCcccccccCcCceEEEcCC--CEEEccCCHHHCEEEEEEEecCccce-eEe
Confidence            56779999999999876 555 899999875322211 0123333332  48999999999999999998765432 223


Q ss_pred             EEEEEe
Q psy11549        148 LYQVVL  153 (261)
Q Consensus       148 ~~~v~~  153 (261)
                      .+.|.|
T Consensus        81 ~~~l~V   86 (89)
T cd04979          81 TYSLNV   86 (89)
T ss_pred             EEEEEE
Confidence            555554

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.11  E-value=3.5e-10  Score=71.67  Aligned_cols=58  Identities=19%  Similarity=0.207  Sum_probs=46.7

Q ss_pred             CCCCeeccCCCCceEEE---ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece
Q psy11549          1 MAGGIPLAHNTSARIIL---SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI   60 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~---~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~   60 (261)
                      +|||++|..+.+ ..+.   ..+.|.|.++..+|+|.|+|.|.|..|.. ..++.|.|..+|.
T Consensus        35 ~kdg~~l~~~~~-~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~-~~~~~l~V~~~P~   95 (98)
T cd05762          35 MKFRKQIQEGEG-IKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSR-QAQVNLTVVDKPD   95 (98)
T ss_pred             EECCEEecCCCc-EEEEecCCeeEEEECCCChhhCEEEEEEEEcCCCce-eEEEEEEEecCCC
Confidence            589999974433 3332   24589999999999999999999999998 6689999987763

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.10  E-value=2.7e-09  Score=66.81  Aligned_cols=69  Identities=25%  Similarity=0.505  Sum_probs=50.3

Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEe
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .|..+.|.|.+.+.|.| ++.|++++.... .....++.....  .|.|.++. .+|+|.|+|.|.|..|....
T Consensus        18 ~~~~~~l~C~~~g~p~p-~i~W~k~~~~l~-~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          18 DEGKVSLNCRARGSPPP-TYRWLMNGTEID-DEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCCEEEEEEeeeEcCCC-EEEEEECCEECC-CCCCCCEEEECC--EEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            45679999999999888 899999874221 112333433332  68888876 48999999999999987654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.09  E-value=3.1e-10  Score=72.07  Aligned_cols=54  Identities=24%  Similarity=0.304  Sum_probs=42.9

Q ss_pred             CCCCeeccCCCCceEEE-E-------CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIIL-S-------NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~-~-------~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +|||++|..+.. ..+. .       .++|.|.++..+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus        39 ~Kdg~~i~~~~~-~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~-~~t~~L~V~  100 (101)
T cd04975          39 TYDNRTLTNKLT-EIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK-SLTFELYVN  100 (101)
T ss_pred             EeCCeeCCCCcc-eeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE-EEEEEEEEE
Confidence            689999974333 3332 2       3689999999999999999999999987 677888775

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.09  E-value=3.3e-10  Score=67.31  Aligned_cols=52  Identities=21%  Similarity=0.384  Sum_probs=41.4

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||||++|..+  .+....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.+.|
T Consensus        18 ~k~g~~l~~~--~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~   69 (71)
T cd04976          18 YKNGKLISEK--NRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL   69 (71)
T ss_pred             EECCEECCCC--CEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence            5899999644  3556677899999999999999999999998875 44455544

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.08  E-value=1.4e-09  Score=67.86  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=54.3

Q ss_pred             EEeeCCCcEEEEEEEeeC-----CCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         69 VGASRSESVDIHCAVEAD-----PPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      ..+..|.++.|.|...+.     |.| .+.|++++.  .+......+.   ....|.|.++..+|+|.|+|.+.+..+..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p-~i~Wyk~~~--~i~~~~~~~~---~~~~L~I~~v~~~DsG~YtC~~~n~~~~~   78 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLP-PVQWYKDCK--LLEGDRKRFV---KGSKLLIQNVTEEDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCC-cEEEeECCE--ECCCCccEEe---cCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence            557789999999987542     345 899999884  2322222222   33479999999999999999999987776


Q ss_pred             EeeEEEE
Q psy11549        144 VTPCLYQ  150 (261)
Q Consensus       144 ~~~~~~~  150 (261)
                      .......
T Consensus        79 ~~~~t~t   85 (92)
T cd05757          79 QYNVTRT   85 (92)
T ss_pred             EEEEEEE
Confidence            5543333

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.08  E-value=3.3e-10  Score=68.05  Aligned_cols=53  Identities=28%  Similarity=0.551  Sum_probs=43.0

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.++..+ .+.....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        22 ~k~g~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V   74 (74)
T cd05745          22 TKGGSQLSVD-RRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLTV   74 (74)
T ss_pred             EECCEECCCC-CCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEeC
Confidence            4789988643 34556677899999999999999999999999987 55666654

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.07  E-value=6.8e-10  Score=67.02  Aligned_cols=54  Identities=24%  Similarity=0.436  Sum_probs=43.6

Q ss_pred             CCCCeeccCCC-CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNT-SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.++.... ..+....+++|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus        21 ~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   75 (76)
T cd05867          21 SINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV   75 (76)
T ss_pred             EECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence            57999886432 23455677899999999999999999999999987 55677776

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.07  E-value=4.4e-10  Score=69.73  Aligned_cols=55  Identities=31%  Similarity=0.517  Sum_probs=45.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||+++.....+.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        32 ~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724          32 RKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV   86 (86)
T ss_pred             EECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence            4789988765555666667899999999999999999999999987677777654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.06  E-value=1.2e-09  Score=67.00  Aligned_cols=66  Identities=14%  Similarity=0.133  Sum_probs=50.1

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      .+.+|++++|.|.+....+...+.|++++....  .       ......|.|.++..+|+|.|+|.+.+..+...
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~--~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~   75 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKK--Y-------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS   75 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEcc--c-------cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence            477999999999986544444899999874221  1       11234799999999999999999999877544

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.06  E-value=3.3e-10  Score=65.99  Aligned_cols=48  Identities=25%  Similarity=0.369  Sum_probs=38.1

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||||++|...      ..++.|.|.++..+|+|.|+|.|.|..|.. +.++.|+|
T Consensus        18 ~kdg~~l~~~------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l   65 (67)
T cd05863          18 YKDGKLISGK------HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL   65 (67)
T ss_pred             EECCEECccc------CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence            5899999521      235699999999999999999999999976 45555555

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.06  E-value=7.2e-10  Score=65.89  Aligned_cols=53  Identities=19%  Similarity=0.303  Sum_probs=42.6

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.++.... +..+..++.|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        19 ~k~g~~~~~~~-~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V   71 (71)
T cd05723          19 VKNGDMVIPSD-YFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLII   71 (71)
T ss_pred             EECCeECCCCC-CEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEEC
Confidence            57888886543 3455567889999999999999999999999997 56666654

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.05  E-value=5.7e-10  Score=69.65  Aligned_cols=54  Identities=28%  Similarity=0.451  Sum_probs=42.8

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.++... .......+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        37 ~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          37 VNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            5788888532 22222344699999999999999999999999998788888877

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.05  E-value=4.3e-09  Score=66.27  Aligned_cols=70  Identities=14%  Similarity=0.276  Sum_probs=51.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccc-----cccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGET-----LDVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-----~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      +.+.+|+++.|.|.+.+.|.+ .+.|++.+....     ......++..   ......|.|.++..+|+|.|+|.+.+.
T Consensus         7 v~v~eG~~v~L~C~~~~~p~~-~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           7 VTVVEGGTANLTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             EEEecCCcEEEEEEEecCCce-EEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            678899999999999998877 799986432100     0112334432   234468999999999999999999974

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.05  E-value=9.4e-10  Score=68.44  Aligned_cols=73  Identities=22%  Similarity=0.343  Sum_probs=52.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ..+.+|+.+.|.|......++..+.|++++....+.....++ .......|.|.++..+|+|.|+|.|.|....
T Consensus        13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~-~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRF-VSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeE-EeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            567789999999977655444489999987432222233333 3333447999999999999999999997544

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.05  E-value=9.4e-10  Score=66.96  Aligned_cols=52  Identities=19%  Similarity=0.279  Sum_probs=38.8

Q ss_pred             CCCCeeccCCCCceEEEE---------CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEE
Q psy11549          1 MAGGIPLAHNTSARIILS---------NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKL   53 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l   53 (261)
                      ||||++|..+........         .+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus        18 ~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~   78 (81)
T cd04971          18 YHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSISA   78 (81)
T ss_pred             EECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEEe
Confidence            689999975543222211         3479999999999999999999999997 444433

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.05  E-value=2.1e-09  Score=62.61  Aligned_cols=62  Identities=29%  Similarity=0.467  Sum_probs=41.6

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCc-e-eEEEEecCCCCcCeEEEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR-G-SMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~-~~l~i~~~~~~d~g~y~C~~  136 (261)
                      |+.++|.|.+...+++..+.|++++......... ....... . ..|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT-NRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE-EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCccee-EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999444444499999988543221111 1111111 1 13999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.03  E-value=2.9e-09  Score=66.41  Aligned_cols=74  Identities=16%  Similarity=0.244  Sum_probs=51.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc----c-------CCceE--E---eCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD----V-------GSERF--S---SGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----~-------~~~~~--~---~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+..|++++|+|.+.+.+.+ .+.|++.+......    +       ...++  .   .......|+|.++..+|+|.|
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~-~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCc-EEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence            456789999999999987776 89998654211100    0       01111  1   133456799999999999999


Q ss_pred             EEEEEcCCceE
Q psy11549        133 SCAAQNAIGTQ  143 (261)
Q Consensus       133 ~C~~~~~~~~~  143 (261)
                      +|.+.+..+..
T Consensus        81 ~C~v~~~~~~~   91 (94)
T cd07690          81 ICEVEDKKEEV   91 (94)
T ss_pred             EEEECCccceE
Confidence            99999876543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.03  E-value=6.9e-10  Score=65.41  Aligned_cols=51  Identities=18%  Similarity=0.270  Sum_probs=38.6

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLR   54 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~   54 (261)
                      ||||++|..+   .....+..|.|.++..+|+|.|+|.|.|..|.. ...++.|.
T Consensus        18 ~k~g~~l~~~---~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864          18 YKNGQLIVLN---HTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             EECCEECCCC---CEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            5899999643   223456689999999999999999999999875 23344443

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.02  E-value=7.1e-09  Score=63.99  Aligned_cols=78  Identities=21%  Similarity=0.342  Sum_probs=52.7

Q ss_pred             CCcEEEEEEEeeCCC-CceeEEEEcCCcccc--ccCCceE---EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         74 SESVDIHCAVEADPP-ARSFKWKFNNSGETL--DVGSERF---SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        74 g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~--~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      |+++.|.|.+.+.+. ...+.|.++++....  .....+.   ......+.|.|.++..+|+|.|+|.|.|..+......
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            788999999987653 347899877642211  0111011   1122356899999999999999999999887766654


Q ss_pred             EEEE
Q psy11549        148 LYQV  151 (261)
Q Consensus       148 ~~~v  151 (261)
                      .+.|
T Consensus        81 ~~~V   84 (86)
T cd05862          81 IVIV   84 (86)
T ss_pred             EEEE
Confidence            4443

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.01  E-value=1.6e-09  Score=68.16  Aligned_cols=53  Identities=21%  Similarity=0.409  Sum_probs=39.0

Q ss_pred             CCeeccCCCCceEEEEC----CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          3 GGIPLAHNTSARIILSN----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||++|...+.+.....+    ++|.|.+++.+|+|.|+|.|.|..+...+.++.|.|
T Consensus        39 ~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          39 NGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATVNVKI   95 (96)
T ss_pred             CCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence            78777543444333332    589999999999999999999997443367777766

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.01  E-value=1.1e-09  Score=66.57  Aligned_cols=51  Identities=16%  Similarity=0.436  Sum_probs=39.9

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR   54 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~   54 (261)
                      +|||++|..+.  +....+.+|.|.+++.+|+|.|+|.|.|..|.. ...+.|.
T Consensus        28 ~k~g~~l~~~~--~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~~~~~v~   78 (79)
T cd04973          28 TKDGVQLGENN--RTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD-TTYFSVN   78 (79)
T ss_pred             eeCCcCCCCCc--eEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc-cEEEEEe
Confidence            58999996433  344567799999999999999999999988775 4445444

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.01  E-value=1.4e-09  Score=65.47  Aligned_cols=52  Identities=19%  Similarity=0.224  Sum_probs=38.7

Q ss_pred             CCCCeeccCCCCceE--E-E----ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEE
Q psy11549          1 MAGGIPLAHNTSARI--I-L----SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKL   53 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~--~-~----~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l   53 (261)
                      ||||++|..+.....  . .    ..++|.|.+++.+|+|.|+|.|.|..|.. ++++.+
T Consensus        18 ~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~   76 (79)
T cd05855          18 FHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSA   76 (79)
T ss_pred             EECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEe
Confidence            689999975433211  1 1    12489999999999999999999999987 555544

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=98.99  E-value=1.2e-09  Score=69.57  Aligned_cols=54  Identities=20%  Similarity=0.279  Sum_probs=42.1

Q ss_pred             CCCCeeccCCCCceEEE---------ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIIL---------SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~---------~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||||++|..+.. ....         ..++|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus        38 ~kdg~~l~~~~~-~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~-~~t~~l~V~  100 (101)
T cd05859          38 LKDNRTLIENLT-EITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK-SYTFALQIQ  100 (101)
T ss_pred             EECCEECcCCcc-eEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE-EEEEEEEEE
Confidence            689999974432 2221         13589999999999999999999999887 667777774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=98.99  E-value=1.1e-09  Score=65.50  Aligned_cols=53  Identities=28%  Similarity=0.369  Sum_probs=42.1

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.++..+. +.....+++|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        21 ~k~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   73 (73)
T cd04969          21 SKGTELLTNSS-RICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLSV   73 (73)
T ss_pred             EECCEEcccCC-CEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEEC
Confidence            47888886443 3455567899999999999999999999999987 55666654

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=98.99  E-value=1.9e-09  Score=64.72  Aligned_cols=54  Identities=28%  Similarity=0.465  Sum_probs=40.6

Q ss_pred             CCCCeeccCCCCceEEEE--CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILS--NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.+|..+........  ..+|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        19 ~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   74 (74)
T cd05748          19 SKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVKV   74 (74)
T ss_pred             EECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEEC
Confidence            588999854433222222  3489999999999999999999999987 66666654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.98  E-value=1.8e-08  Score=62.77  Aligned_cols=73  Identities=25%  Similarity=0.420  Sum_probs=49.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEc-CCceEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN-AIGTQV  144 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~-~~~~~~  144 (261)
                      +.+.+|+++.|.|.. ..|.| .+.|++...+....  . ...++....  ..|.|.++..+|+|.|+|.+.+ ..+...
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p-~v~Wykq~~g~~~~~~~~~~~r~~~~~--~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~   81 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQA-SVKWLFQRGGDQRKEEVKTEERLIHTE--RGLLLRSLQRSDAGVYTCTAVEHSFSQTL   81 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCc-eEEEEEECCCCCccccccccccEEEec--CeEEEeeCChhHCEEEEEEEEccCCeEEE
Confidence            567799999999996 45656 89999854322211  1 123333333  3599999999999999999985 444344


Q ss_pred             e
Q psy11549        145 T  145 (261)
Q Consensus       145 ~  145 (261)
                      .
T Consensus        82 ~   82 (91)
T cd05871          82 A   82 (91)
T ss_pred             E
Confidence            3

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.98  E-value=4.3e-09  Score=60.85  Aligned_cols=63  Identities=30%  Similarity=0.531  Sum_probs=46.9

Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .|+.+.|.|.+.+.+.+ .+.|++++..  +.   ...........|.|.++...|+|.|+|.+.+..|
T Consensus         1 ~g~~~~l~C~~~~~~~~-~v~W~~~~~~--~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVP-NITWLKDGKP--LP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCC-eEEEEECCEE--CC---CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            47889999998777777 8999997642  22   1212223344799999999999999999988653

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=98.98  E-value=1.4e-09  Score=64.24  Aligned_cols=51  Identities=27%  Similarity=0.381  Sum_probs=40.4

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKL   53 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l   53 (261)
                      +|||.++..+ .+..+..+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus        18 ~k~g~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L   68 (69)
T cd05746          18 NKDGVQVTES-GKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA-SVSMVL   68 (69)
T ss_pred             EECCEECCCC-CCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence            4788888643 33445567899999999999999999999999987 555554

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.98  E-value=1.8e-09  Score=63.82  Aligned_cols=52  Identities=27%  Similarity=0.391  Sum_probs=40.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +||+..+.  ..+.....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        18 ~k~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   69 (69)
T cd05725          18 RKEDGELP--KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLTV   69 (69)
T ss_pred             EECCccCC--CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEEC
Confidence            36666664  234555577899999999999999999999999987 55666654

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.97  E-value=1.5e-09  Score=64.10  Aligned_cols=52  Identities=25%  Similarity=0.347  Sum_probs=38.2

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCc-ceeeeEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKL   53 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~-~~s~~~~l   53 (261)
                      +|||.+|..+.. .....+.+|.|.+++.+|+|.|+|.|.|.... .....+.|
T Consensus        18 ~kdg~~l~~~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~   70 (72)
T cd07702          18 LKDGLPAAEKCS-RYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL   70 (72)
T ss_pred             EECCEECCCCCc-EEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence            589999975433 34455679999999999999999999998443 33334444

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.97  E-value=1.7e-09  Score=64.29  Aligned_cols=53  Identities=28%  Similarity=0.441  Sum_probs=41.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.++..+ .......+++|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        18 ~k~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05876          18 DRIDGPLSPN-RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV   70 (71)
T ss_pred             EECCcCCCCC-ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence            4777777543 22334456799999999999999999999999987 66677776

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=98.96  E-value=2.3e-09  Score=66.17  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=41.4

Q ss_pred             CCCCeeccCCCCceEEEE---CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILS---NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||+++...+.+..+..   .++|.|.++..+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        30 ~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~~l~V   86 (86)
T cd05894          30 SRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HASLFVKV   86 (86)
T ss_pred             EECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEEEEEEC
Confidence            588999975443333332   2589999999999999999999999987 56666654

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=98.96  E-value=2.5e-09  Score=64.61  Aligned_cols=54  Identities=22%  Similarity=0.402  Sum_probs=43.1

Q ss_pred             CCCCeeccCCCC-ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTS-ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||+++..... ......++.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus        21 ~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V   75 (76)
T cd04978          21 RLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV   75 (76)
T ss_pred             EECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence            478888864432 2455567899999999999999999999999987 56677776

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []

Probab=98.96  E-value=1.3e-08  Score=62.82  Aligned_cols=82  Identities=23%  Similarity=0.329  Sum_probs=63.9

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccc-eeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLN-LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      +|.++.+.......+.|.|..+...+.+ ..|.+.++...... ............++|.+  |.++..|.|++.|.|..
T Consensus         2 ~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~v~a~~~~   79 (85)
T PF00041_consen    2 APENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITG--LQPGTTYEFRVRAVNSD   79 (85)
T ss_dssp             SSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEES--CCTTSEEEEEEEEEETT
T ss_pred             cCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeecc--CCCCCEEEEEEEEEeCC
Confidence            5677888888999999999975434444 45999988766664 22333444456899999  99999999999999999


Q ss_pred             CcCCce
Q psy11549        237 GRSLPV  242 (261)
Q Consensus       237 G~~~~s  242 (261)
                      |.|++|
T Consensus        80 g~g~~S   85 (85)
T PF00041_consen   80 GEGPPS   85 (85)
T ss_dssp             EEEEEE
T ss_pred             cCcCCC
Confidence            988765

They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=98.95  E-value=3.7e-09  Score=63.91  Aligned_cols=55  Identities=24%  Similarity=0.466  Sum_probs=41.1

Q ss_pred             CCCCeeccCCCCceEE-EECCeEEEccCCCCCCEeEEEEEEeCCCcce-eeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARII-LSNQSLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-s~~~~l~V   55 (261)
                      ||||.+|..+..+... ..+++|.|.+++.+|+|.|+|.|.|..|... +..+.|.|
T Consensus        18 ~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760          18 FRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             EECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            5899999754433333 2346899999999999999999999999863 34555555

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=98.95  E-value=2.9e-09  Score=64.19  Aligned_cols=54  Identities=20%  Similarity=0.428  Sum_probs=42.7

Q ss_pred             CCCCeeccCCC-CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNT-SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||+++.... .......++.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|
T Consensus        21 ~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v   75 (76)
T cd05868          21 LTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNV   75 (76)
T ss_pred             EECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence            47999986332 22334556799999999999999999999999998 66677776

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.94  E-value=4.9e-09  Score=65.98  Aligned_cols=54  Identities=30%  Similarity=0.496  Sum_probs=42.8

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCC-CCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVS-RQSAGTYKCSAINTKGEATSNQLKLR   54 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~s~~~~l~   54 (261)
                      +|||++|......+....+++|.|.++. .+|+|.|+|.|.|..|...++.+.|.
T Consensus        39 ~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          39 KMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             EECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence            5799999754444555677899998865 59999999999999999877766653

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=98.94  E-value=2.4e-08  Score=63.06  Aligned_cols=71  Identities=15%  Similarity=0.299  Sum_probs=50.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc-----ccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL-----DVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +.+.+|++++|.|.+.+.+.+ .+.|++.+.....     .....++..   ......|.|.++..+|+|.|+|.+....
T Consensus         7 ~~v~~G~~v~L~C~~~~~~~~-~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~   85 (95)
T cd05717           7 VTVVEGGTATLKCRVKNNDNS-SLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP   85 (95)
T ss_pred             EEEcCCCCEEEEEEECCCCCc-eEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence            667899999999999887666 8999864321110     012234433   2234579999999999999999999764

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=98.94  E-value=3.4e-09  Score=66.54  Aligned_cols=54  Identities=20%  Similarity=0.310  Sum_probs=40.5

Q ss_pred             CCCCeeccCCCCceEEEE-C--CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILS-N--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~-~--~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||+++..++...+... +  .+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        36 ~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v   92 (92)
T cd05737          36 LKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE-TVDVTVSV   92 (92)
T ss_pred             EECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc-eEEEEEeC
Confidence            589999975444333333 2  379999999999999999999999987 55555543

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.94  E-value=3.7e-09  Score=66.51  Aligned_cols=53  Identities=25%  Similarity=0.439  Sum_probs=42.0

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCC-CCCCEeEEEEEEeCCCcceeeeEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVS-RQSAGTYKCSAINTKGEATSNQLKL   53 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~s~~~~l   53 (261)
                      ||||.+|......+....+++|.|.++. .+|+|.|+|.|.|..|...++.+.|
T Consensus        39 ~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          39 LRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             EECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            5899999644443555677899999985 6999999999999999886666554

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.94  E-value=4.8e-09  Score=65.41  Aligned_cols=44  Identities=20%  Similarity=0.362  Sum_probs=36.3

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA   46 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~   46 (261)
                      ||||++|..+.  .....++.|.|.+++.+|+|.|+|.+.|..+..
T Consensus        35 yk~~~~i~~~~--~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~   78 (92)
T cd05757          35 YKDCKLLEGDR--KRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             eECCEECCCCc--cEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence            68999997433  223378899999999999999999999987765

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.89  E-value=1.1e-07  Score=59.37  Aligned_cols=82  Identities=20%  Similarity=0.212  Sum_probs=60.1

Q ss_pred             EEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCC-----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         68 IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS-----RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      .+.+.+|+++.|.|.+.+.|+|..+.|.+.+....- .....+....     -.+.|.+..+..+|+|.|+|.|.|....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~-~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTN-TSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCc-cccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            377899999999999999999956999987542111 1111122211     3468999999999999999999998877


Q ss_pred             EEeeEEEEEE
Q psy11549        143 QVTPCLYQVV  152 (261)
Q Consensus       143 ~~~~~~~~v~  152 (261)
                      ...  .|.+.
T Consensus        91 ~s~--tF~l~   98 (101)
T cd05860          91 ASV--TFNVY   98 (101)
T ss_pred             EEE--EEEEE
Confidence            766  44444

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.89  E-value=7.5e-09  Score=64.53  Aligned_cols=52  Identities=19%  Similarity=0.446  Sum_probs=40.8

Q ss_pred             CCeeccCCCCceEEEECC---eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          3 GGIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||.++..+ .+.....++   +|.|.++..+|+|.|+|.|.|..|....+++.|.|
T Consensus        37 ~g~~~~~~-~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          37 QGEKIVSS-QRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEI   91 (92)
T ss_pred             CCeEecCC-CCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            67777543 345544454   89999999999999999999999987677777765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.88  E-value=1.5e-08  Score=63.00  Aligned_cols=71  Identities=23%  Similarity=0.291  Sum_probs=53.8

Q ss_pred             EEEeeCCCcEEEEEE-EeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCe-EEEEEEEcCCce
Q psy11549         68 IVGASRSESVDIHCA-VEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG-TLSCAAQNAIGT  142 (261)
Q Consensus        68 ~~~~~~g~~~~l~C~-~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~  142 (261)
                      .+.+.+|+.+.|.|. ..+.|.| .+.|+.++. ..+. ...++..... ..|.|.++..+|+| .|.|.|.+....
T Consensus        12 ~v~V~eG~~~~L~C~pP~g~P~P-~i~W~~~~~-~~i~-~~~Ri~~~~~-GnL~fs~v~~~D~g~~Y~C~a~~~~~~   84 (95)
T cd05845          12 PVEVEEGDSVVLPCNPPKSAVPL-RIYWMNSDL-LHIT-QDERVSMGQN-GNLYFANVEEQDSHPDYICHAHFPGLR   84 (95)
T ss_pred             eeEEecCCCEEEEecCCCCCCCC-EEEEECCCC-cccc-ccccEEECCC-ceEEEEEEehhhCCCCeEEEEEccccc
Confidence            377889999999997 5777777 899996553 2232 3455555443 47999999999999 899999987543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.88  E-value=4.5e-09  Score=65.96  Aligned_cols=54  Identities=15%  Similarity=0.170  Sum_probs=40.5

Q ss_pred             CCCCeeccC--CCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAH--NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||||.++..  ....+....++.|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|
T Consensus        39 yk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~-~~~~~L~v   94 (94)
T cd05756          39 YKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM-KVSISLTV   94 (94)
T ss_pred             EEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE-EEEEEEEC
Confidence            577876542  1233445567899999999999999999999998886 55566654

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.86  E-value=7.2e-09  Score=63.96  Aligned_cols=52  Identities=33%  Similarity=0.521  Sum_probs=41.9

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.++...  .+....++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        34 ~k~g~~~~~~--~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   85 (85)
T cd05728          34 LKNGQPLASE--NRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI-YASAELAV   85 (85)
T ss_pred             EECCEECCCC--CeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeE-EEEEEEEC
Confidence            5889988643  2455678899999999999999999999999987 55666654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=98.86  E-value=5.7e-09  Score=62.12  Aligned_cols=53  Identities=26%  Similarity=0.466  Sum_probs=39.6

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +||+.++... .......+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        18 ~k~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05731          18 IKIGGELPAD-RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV   70 (71)
T ss_pred             EECCeECCCC-ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence            3677776432 22223345699999999999999999999999986 66677766

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.86  E-value=1.2e-08  Score=63.60  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=39.9

Q ss_pred             CCCCeeccCCCCceEEEE-CCeEEEccCCCCCCEeEEEEEEeCCCcc---eeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILS-NQSLVLQKVSRQSAGTYKCSAINTKGEA---TSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~-~~~L~i~~~~~~D~G~Y~C~~~~~~~~~---~s~~~~l~V   55 (261)
                      |||+++|..++.+..... +..|.|.++..+|+|.|+|.+.+..+..   .++.+.|.|
T Consensus        35 YKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v   93 (95)
T cd05897          35 YKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRI   93 (95)
T ss_pred             ccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence            699999975544444433 4689999999999999999999986553   234444443

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.85  E-value=4.4e-09  Score=64.55  Aligned_cols=54  Identities=22%  Similarity=0.396  Sum_probs=40.0

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.++...........+.+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        29 ~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v   82 (82)
T cd05856          29 LKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVDV   82 (82)
T ss_pred             EECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEeC
Confidence            4788887644333333334689999999999999999999999986 55566553

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.84  E-value=1.6e-08  Score=63.35  Aligned_cols=53  Identities=21%  Similarity=0.356  Sum_probs=42.0

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCC-CCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVS-RQSAGTYKCSAINTKGEATSNQLKLR   54 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~s~~~~l~   54 (261)
                      +|||.++..... +....++.|.|.++. .+|+|.|+|.|.|..|...++.+.|.
T Consensus        39 ~k~~~~i~~~~~-~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          39 RKNNLDIDLTND-RYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             EECCEEccCCCC-eEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            578888864334 445678899999985 69999999999999999877766653

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.84  E-value=1.1e-08  Score=64.16  Aligned_cols=52  Identities=25%  Similarity=0.510  Sum_probs=37.6

Q ss_pred             CCeeccCCCCceEEEEC----CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          3 GGIPLAHNTSARIILSN----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||.++....+ .....+    .+|+|.+++.+|+|.|+|.|.|..|.....++.|.|
T Consensus        37 ~~~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          37 NGEKLVTQQQ-ISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             CCCEeccCCC-EEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence            6766654333 333333    389999999999999999999997765566676654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.84  E-value=8.9e-09  Score=63.65  Aligned_cols=54  Identities=20%  Similarity=0.398  Sum_probs=40.4

Q ss_pred             CCCCeeccCCCCc---eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSA---RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||||+++..+...   .....+.+|.|.+++.+|+|.|+|.|.|..|.. ..++.|.|
T Consensus        29 ~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v   85 (85)
T cd05857          29 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDV   85 (85)
T ss_pred             EECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEEEEEC
Confidence            5889998643321   112234589999999999999999999999987 56676654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=98.83  E-value=3.9e-08  Score=61.02  Aligned_cols=74  Identities=9%  Similarity=0.050  Sum_probs=52.1

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      ..|+.+.|.|.+   .|.|.+...|++............ .....|.|.+++.+|.|.|  +|.|.|.+|....+..+.+
T Consensus        14 ~~G~~v~l~C~~---~G~P~P~v~W~k~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y--~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          14 LKGQNVTLECFA---LGNPVPVIRWRKILEPMPATAEIS-MSGAVLKIFNIQPEDEGTY--ECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             eCCCcEEEEEEe---cccCCCEEEEEECCcCCCCCCEEe-cCCCEEEECcCChhhCEEE--EEEEEcCCCceEEEEEEEE
Confidence            459999999997   455644445555433222121222 2346899999999999999  9999999999887776655

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.83  E-value=1.2e-08  Score=61.31  Aligned_cols=37  Identities=30%  Similarity=0.530  Sum_probs=32.6

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        38 ~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V   74 (75)
T cd05763          38 EDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV   74 (75)
T ss_pred             CCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence            45699999999999999999999999986 66677776

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.83  E-value=5e-08  Score=61.05  Aligned_cols=75  Identities=20%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             EEeeCCCcEEEEEEEe----------eCCCCceeEEEEcCCccccccC----CceEEeCCceeEEEEecCCCCcCeEEEE
Q psy11549         69 VGASRSESVDIHCAVE----------ADPPARSFKWKFNNSGETLDVG----SERFSSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~----------~~~~~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      ..+.+|+++.|.|..-          +.....++.|++++.....+..    ..++...+.  .|.|.++..+|+|.|+|
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C   87 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTC   87 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEE
Confidence            5577999999999861          1222337999998633222221    123333443  79999999999999999


Q ss_pred             EEEcCCceEEe
Q psy11549        135 AAQNAIGTQVT  145 (261)
Q Consensus       135 ~~~~~~~~~~~  145 (261)
                      .+.|...-...
T Consensus        88 ~~rN~t~C~~~   98 (104)
T cd05896          88 VLRNSTYCMKV   98 (104)
T ss_pred             EECCCCcceEE
Confidence            99997644333

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.82  E-value=4.5e-08  Score=61.00  Aligned_cols=72  Identities=21%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             EEeeCCCcEEEEEEE-ee----CCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         69 VGASRSESVDIHCAV-EA----DPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~-~~----~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      ..+..|.+..|.|.- .+    .+.+ .+.||+++.  .+.....++........|.|.++..+|+|.|+|.+.+..+..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~-~v~WYKd~~--~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDV-ELQWYKDSV--LLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCC-cEEEccCCE--ECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            345678899999963 22    2334 899999884  333333344332233469999999999999999999986554

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.82  E-value=2.9e-08  Score=59.86  Aligned_cols=55  Identities=24%  Similarity=0.424  Sum_probs=42.6

Q ss_pred             CCCCeeccCCCC-ceEEEEC-CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTS-ARIILSN-QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~~-~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +|||++|..+.. +.....+ .+|.|.+++.+|.|.|+|.+.|..|.. ..++.|.|.
T Consensus        18 ~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   74 (76)
T cd05736          18 LKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE   74 (76)
T ss_pred             EECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence            578888865433 2333344 479999999999999999999999987 667888774

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.81  E-value=1.3e-08  Score=61.04  Aligned_cols=51  Identities=24%  Similarity=0.494  Sum_probs=40.1

Q ss_pred             CCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||..+.. ..+.....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        24 ~~~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v   74 (74)
T cd05764          24 DGKLISN-SSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELHI   74 (74)
T ss_pred             CCEEecC-CCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEEC
Confidence            6666653 344556678899999999999999999999999986 66666654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.81  E-value=1.5e-08  Score=65.56  Aligned_cols=58  Identities=24%  Similarity=0.335  Sum_probs=44.5

Q ss_pred             CCCCeeccCCCCceEEE-------ECCeEEEccCC-CCCCEeEEEEEEeCCCcceeeeEEEEEEeec
Q psy11549          1 MAGGIPLAHNTSARIIL-------SNQSLVLQKVS-RQSAGTYKCSAINTKGEATSNQLKLRVKYAP   59 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~-------~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p   59 (261)
                      +|||.+|...+.++...       .+++|.|.++. .+|.|.|+|.|.|..|.. +..+.|.|..+|
T Consensus        43 ~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i~L~~~~~p  108 (109)
T cd05773          43 AKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLDIQLVSTSRP  108 (109)
T ss_pred             EECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEEEEEEecCCC
Confidence            58999986444333211       13589999997 599999999999999997 777888887665

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.80  E-value=1.6e-08  Score=63.83  Aligned_cols=55  Identities=31%  Similarity=0.465  Sum_probs=43.8

Q ss_pred             CCCCeeccCCCC-ceEEEECCeEEEccC-----CCCCCEeEEEEEEeC-CCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTS-ARIILSNQSLVLQKV-----SRQSAGTYKCSAINT-KGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~~~~L~i~~~-----~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V   55 (261)
                      +|||++|..... +.....+++|.|.++     +.+|+|.|+|.|.|. .|...++.+.|.|
T Consensus        34 ~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          34 KKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence            589999964332 355567788998887     689999999999999 9998788787765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.79  E-value=2.1e-08  Score=62.79  Aligned_cols=53  Identities=15%  Similarity=0.285  Sum_probs=38.6

Q ss_pred             CCCCeeccCCCCceEEEEC---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR   54 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~   54 (261)
                      ||||+++..+........+   .+|.|.+++.+|+|.|+|.|.|..|.. ..++.|.
T Consensus        36 ~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~   91 (92)
T cd05891          36 FKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE-TVDVTVS   91 (92)
T ss_pred             EECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce-eeEEEEE
Confidence            5788888654332232333   289999999999999999999999987 4445544

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>smart00409 IG Immunoglobulin

Probab=98.79  E-value=3.5e-07  Score=56.18  Aligned_cols=74  Identities=36%  Similarity=0.593  Sum_probs=53.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceE--EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF--SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +.+..|+++.|.|.+.+.+.+ .+.|++++ +..+. ...++  ........|.|.++...|.|.|.|.+.+..+....
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~-~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~   79 (86)
T smart00409        4 VTVKEGESVTLSCEVSGSPPP-EVTWYKQG-GKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS   79 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCC-eEEEEECC-CEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence            456789999999999988555 89999872 12221 12222  22222468999999999999999999987666544

>smart00410 IG_like Immunoglobulin like

Probab=98.79  E-value=3.5e-07  Score=56.18  Aligned_cols=74  Identities=36%  Similarity=0.593  Sum_probs=53.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceE--EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF--SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +.+..|+++.|.|.+.+.+.+ .+.|++++ +..+. ...++  ........|.|.++...|.|.|.|.+.+..+....
T Consensus         4 ~~~~~g~~~~l~C~~~~~~~~-~~~W~~~~-~~~v~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~   79 (86)
T smart00410        4 VTVKEGESVTLSCEVSGSPPP-EVTWYKQG-GKLLA-ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASS   79 (86)
T ss_pred             EEEeCCCeEEEEEEEccCCCC-eEEEEECC-CEEcC-CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEE
Confidence            456789999999999988555 89999872 12221 12222  22222468999999999999999999987666544

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.79  E-value=2.3e-08  Score=60.42  Aligned_cols=53  Identities=26%  Similarity=0.483  Sum_probs=39.5

Q ss_pred             CCCCeeccCCCCceEE--EECCeEEEccCCC----CCCEeEEEEEEeCCCcceeeeEEE
Q psy11549          1 MAGGIPLAHNTSARII--LSNQSLVLQKVSR----QSAGTYKCSAINTKGEATSNQLKL   53 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~--~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~~s~~~~l   53 (261)
                      +|||.+|......++.  ..+++|.|.++..    +|+|.|+|.|.|..|...+..+.|
T Consensus        18 ~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733          18 TRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             EECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            5899998643322333  3468999999864    799999999999999886766554

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.78  E-value=2.5e-08  Score=60.15  Aligned_cols=53  Identities=23%  Similarity=0.470  Sum_probs=38.6

Q ss_pred             CCCCeeccCCCCceEE--EECCeEEEccCCC----CCCEeEEEEEEeCCCcceeeeEEE
Q psy11549          1 MAGGIPLAHNTSARII--LSNQSLVLQKVSR----QSAGTYKCSAINTKGEATSNQLKL   53 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~--~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~~s~~~~l   53 (261)
                      +|||.+|.........  ..+++|.|..+..    .|.|.|+|.|.|..|...++.+.|
T Consensus        18 ~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874          18 TRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             EECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            5889988533332232  3468999988875    378999999999999986665554

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.78  E-value=1.2e-07  Score=57.66  Aligned_cols=70  Identities=27%  Similarity=0.490  Sum_probs=49.5

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+..|+.+.|.|.+.+.|.+ .+.|++++.  .+..       ...  .+.+..+..+|.|.|+|.+.+..+. ..+..+
T Consensus        10 ~v~~g~~~~l~C~~~~~p~~-~~~w~~~~~--~~~~-------~~~--~~~~~~~~~~~~g~y~C~~~~~~~~-~~s~~~   76 (80)
T PF13895_consen   10 SVEEGDSVTLTCSVSGNPPP-QVQWYKNGS--PINS-------SQN--GLFIPNVSPEDSGNYTCRASNGSGS-NTSTSV   76 (80)
T ss_dssp             EEETTSEEEEEEEEESSSSS-EEEEEETTE--EEEE-------ESS--EEEESSEEGGGTEEEEEEEEETTEE-EEEEEE
T ss_pred             EEeCCCcEEEEEEEEcccce-eeeeeeeee--eeee-------eee--eeeeeeeccccCEEEEEEEEeCCCC-eEeeeE
Confidence            36789999999999987776 899998652  2211       111  2667888999999999999996553 222244


Q ss_pred             EEE
Q psy11549        150 QVV  152 (261)
Q Consensus       150 ~v~  152 (261)
                      .|.
T Consensus        77 ~v~   79 (80)
T PF13895_consen   77 NVT   79 (80)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            443

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.77  E-value=3e-07  Score=57.41  Aligned_cols=69  Identities=19%  Similarity=0.201  Sum_probs=51.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccc-----cccCCceEE---eCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGET-----LDVGSERFS---SGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-----~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      +.+.+|+++.|.|.+...... .+.|++.+....     ......++.   ..+....|.|.++..+|.|.|+|.+..
T Consensus         7 vtv~~G~ta~L~C~v~~~~~~-~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t   83 (95)
T cd05881           7 VTVVEGEVAIISCRVKNNDDS-VIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT   83 (95)
T ss_pred             eEEcCCCcEEEEEEEccCCcc-EEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence            678899999999999987665 688886653211     112334444   234566899999999999999999986

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.76  E-value=6.3e-07  Score=60.90  Aligned_cols=74  Identities=15%  Similarity=0.147  Sum_probs=48.5

Q ss_pred             EEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcc-eEEeecCCeEEEEeecCCCCCCCe-EEEEEEEe
Q psy11549        118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNC-SVRNETTSSVHISCTPGYDGGLPQ-TFTLELYS  195 (261)
Q Consensus       118 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~-~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~  195 (261)
                      +|.|.++..+|.|.|.|.+.+..+....  .+.+.+..+|...... .+....+..+.|.|.+  .+..|. .-+.|++.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~--~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a--~g~~P~~~~i~W~~~   77 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQ--IIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHI--AGYYPLDVQVEWTRE   77 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceee--EEEEEEecCCceEEeCCCceeecCCcEEEEEEE--CCCCCCCeEEEEEEC
Confidence            6899999999999999999987666555  4455555666421110 1111247889999998  555664 23344444

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.76  E-value=4e-08  Score=59.26  Aligned_cols=53  Identities=25%  Similarity=0.307  Sum_probs=38.8

Q ss_pred             CCCCeeccCC-CCceEE-EECCeEEEccCCC----CCCEeEEEEEEeCCCcceeeeEEE
Q psy11549          1 MAGGIPLAHN-TSARII-LSNQSLVLQKVSR----QSAGTYKCSAINTKGEATSNQLKL   53 (261)
Q Consensus         1 ~~ng~~l~~~-~~~~~~-~~~~~L~i~~~~~----~D~G~Y~C~~~~~~~~~~s~~~~l   53 (261)
                      +|||+++... +.+... ..+++|.|..+..    +|+|.|+|.|.|..|...+..+.|
T Consensus        18 ~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875          18 TRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             EECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            5889887532 333333 3567999998752    579999999999999987776655

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.74  E-value=3.3e-08  Score=61.83  Aligned_cols=54  Identities=37%  Similarity=0.612  Sum_probs=41.8

Q ss_pred             CCCCeeccCCCCceEEEEC--CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~--~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.+|..+........+  .+|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|
T Consensus        35 ~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V   90 (90)
T PF07679_consen   35 YKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSGEA-TASVNLTV   90 (90)
T ss_dssp             EETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             cccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCCEE-EEEEEEEC
Confidence            4788888765443444333  489999999999999999999998877 66677765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.73  E-value=4.7e-08  Score=59.42  Aligned_cols=44  Identities=32%  Similarity=0.501  Sum_probs=36.5

Q ss_pred             CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        12 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .+.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|+|
T Consensus        36 ~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734          36 GRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            34445677899999999999999999999999987677676654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.72  E-value=2.5e-08  Score=60.15  Aligned_cols=46  Identities=22%  Similarity=0.430  Sum_probs=34.6

Q ss_pred             CCCCeeccCCC--CceEEE----ECCeEEEccCCCCCCEeEEEEEEeCCCcc
Q psy11549          1 MAGGIPLAHNT--SARIIL----SNQSLVLQKVSRQSAGTYKCSAINTKGEA   46 (261)
Q Consensus         1 ~~ng~~l~~~~--~~~~~~----~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~   46 (261)
                      ||||++|....  ..++..    ..++|.|.+++.+|+|.|+|.|.|..|..
T Consensus        19 ~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~   70 (76)
T cd05895          19 FKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND   70 (76)
T ss_pred             EECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence            57899886432  112221    23589999999999999999999999876

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.72  E-value=1.1e-07  Score=59.46  Aligned_cols=65  Identities=8%  Similarity=0.100  Sum_probs=47.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ..+..|++++|.|... .+.. .+.|++++......    ..........|.|.+++.+|+|.|+|.+.+.
T Consensus        11 ~vV~~G~~VtL~C~~~-~~~~-~f~l~k~g~~~~~~----~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQGP-YGAV-EYRLYREGSTFAVK----KPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEecC-CCCC-EEEEEECCCCcccc----ccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            3467999999999886 3334 79999987532211    1112344557999999999999999999875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.72  E-value=4.8e-08  Score=61.00  Aligned_cols=35  Identities=34%  Similarity=0.475  Sum_probs=31.6

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ++|.|.+++.+|+|.|+|.|.|..|.. ..++.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGIS-HHSAWLTV   89 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcc-cceEEEEE
Confidence            479999999999999999999999987 66778877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.71  E-value=3e-08  Score=59.68  Aligned_cols=46  Identities=26%  Similarity=0.466  Sum_probs=35.5

Q ss_pred             CCCCeeccCCCCce-EEE----ECCeEEEccCCCCCCEeEEEEEEeCCCcc
Q psy11549          1 MAGGIPLAHNTSAR-IIL----SNQSLVLQKVSRQSAGTYKCSAINTKGEA   46 (261)
Q Consensus         1 ~~ng~~l~~~~~~~-~~~----~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~   46 (261)
                      +|||++|..+.... ...    ..++|.|.+++.+|+|.|+|.|.|..|..
T Consensus        19 ~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750          19 FKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND   69 (75)
T ss_pred             EcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence            58999997543322 111    23589999999999999999999999986

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.70  E-value=2e-07  Score=55.93  Aligned_cols=64  Identities=19%  Similarity=0.321  Sum_probs=45.4

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCcccccc----CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDV----GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      +.|.|...+..|+.++.||+++....-..    .+..+.   ..+.|.+.....+|.+.|+|+|.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t---~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVS---VSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEE---EEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            68999998776666999999885322111    011111   24469999999999999999999987653

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.69  E-value=1.8e-07  Score=58.40  Aligned_cols=78  Identities=15%  Similarity=0.129  Sum_probs=52.9

Q ss_pred             CCeEEEEeecCCCCCCCeEEEEEEEeCCccc--------eeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549        170 TSSVHISCTPGYDGGLPQTFTLELYSASDLN--------LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP  241 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~  241 (261)
                      |+.+.|.|.+   .+.|...+.|++......        ............|.|.+++.+|+|.|  .|.|.|.+|....
T Consensus         1 G~~v~L~C~~---~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~~~   75 (90)
T cd05726           1 GRTVTFQCEA---TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYY--ICQTLNVAGSILT   75 (90)
T ss_pred             CCEEEEEEEC---CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEE--EEEEEcCCCceEE
Confidence            5789999997   444544444555432210        00011112345799999999999999  9999999999888


Q ss_pred             eeeeeeeeccc
Q psy11549        242 VIWDDFSMSGA  252 (261)
Q Consensus       242 s~~~~~~~~~~  252 (261)
                      +..+.|.....
T Consensus        76 ~~~l~V~~~~~   86 (90)
T cd05726          76 KAYLEVTDVIA   86 (90)
T ss_pred             EEEEEEeeccc
Confidence            88888875433

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>KOG0196|consensus

Probab=98.69  E-value=1.4e-06  Score=72.61  Aligned_cols=135  Identities=11%  Similarity=0.064  Sum_probs=103.4

Q ss_pred             eeEEEEecCCCCcCeEEEEEEEcCCceEE----eeEEEEEE-eCCCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEE
Q psy11549        116 GSMLRYTPVTELDYGTLSCAAQNAIGTQV----TPCLYQVV-LAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTF  189 (261)
Q Consensus       116 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~----~~~~~~v~-~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~  189 (261)
                      .....+.++.....+.|...|.|......    ..+.+.|. -...|++...+.+.....++++|+|..+...+.. ..|
T Consensus       397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildY  476 (996)
T KOG0196|consen  397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDY  476 (996)
T ss_pred             cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeE
Confidence            34688899999999999999999754322    22233332 2345556666777778899999999976554444 449


Q ss_pred             EEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeeccc
Q psy11549        190 TLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~  252 (261)
                      .+.|+.+......+.......+..+|.+  |.+++.|.|+|+|.-.+|.+..|...++.+..+
T Consensus       477 Evky~ek~~~e~~~~~~~t~~~~~ti~g--L~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~  537 (996)
T KOG0196|consen  477 EVKYYEKDEDERSYSTLKTKTTTATITG--LKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS  537 (996)
T ss_pred             EEEEeeccccccceeEEecccceEEeec--cCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence            9999988766555566666678899999  999999999999999999999999999988766

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.68  E-value=2.9e-07  Score=58.14  Aligned_cols=78  Identities=17%  Similarity=0.155  Sum_probs=52.6

Q ss_pred             EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc---eeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549        166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN---LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      ....|+.+.|.|.+  . +.|..-+.|++......   ..... ......|.|.++..+|.|.|  +|.|.|.+|..+.+
T Consensus        14 ~~~~G~~v~L~C~~--~-g~P~p~v~W~k~g~~~~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~~~~   87 (95)
T cd05730          14 TANLGQSVTLACDA--D-GFPEPTMTWTKDGEPIESGEEKYSF-NEDGSEMTILDVDKLDEAEY--TCIAENKAGEQEAE   87 (95)
T ss_pred             EEeCCCCEEEEEec--c-EeCCCEEEEEECCEECcCCCCEEEE-eCCCCEEEECCCChhhCEEE--EEEEEcCCCeEEEE
Confidence            34569999999997  3 44433333444422111   11211 22346799999999999999  99999999998888


Q ss_pred             eeeeeee
Q psy11549        243 IWDDFSM  249 (261)
Q Consensus       243 ~~~~~~~  249 (261)
                      ..+.+..
T Consensus        88 ~~L~V~~   94 (95)
T cd05730          88 IHLKVFA   94 (95)
T ss_pred             EEEEEEe
Confidence            8777653

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.68  E-value=4.7e-08  Score=61.18  Aligned_cols=50  Identities=28%  Similarity=0.497  Sum_probs=38.9

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCC-CCCEeEEEEEEeCCCcceeee
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSR-QSAGTYKCSAINTKGEATSNQ   50 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~~~~~~~~~~s~~   50 (261)
                      +|||.+|...........++.|.|.++.. +|+|.|+|.|.|..|...++.
T Consensus        39 ~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~   89 (91)
T cd04967          39 LMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVLSRE   89 (91)
T ss_pred             EECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEEecc
Confidence            57888885333334556778999998874 999999999999999876553

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.68  E-value=7.6e-08  Score=60.38  Aligned_cols=51  Identities=24%  Similarity=0.378  Sum_probs=38.6

Q ss_pred             CCCCeeccCCCCceEEEE---CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEE
Q psy11549          1 MAGGIPLAHNTSARIILS---NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKL   53 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l   53 (261)
                      +|||++|..+.+ ..+..   .++|.|.+++.+|+|.|+|.|.|..|.. +.++.|
T Consensus        38 ~k~g~~l~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l   91 (92)
T cd05747          38 MREGQIIVSSQR-HQITSTEYKSTFEISKVQMSDEGNYTVVVENSEGKQ-EAQFTL   91 (92)
T ss_pred             EECCEECCCCCc-EEEEEcCCeeEEEECCCCcccCEeEEEEEEcCCCCE-eEEEEe
Confidence            478888864333 33333   2489999999999999999999999986 555554

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.67  E-value=2.4e-07  Score=58.84  Aligned_cols=74  Identities=11%  Similarity=0.131  Sum_probs=49.9

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc---------eeEEEe-cCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLN---------LLVNLT-NLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      ..|+.++|.|.+   .+.|.+.+.|++......         ..+... ......|.|.+++.+|.|.|  .|.|.|.+|
T Consensus        14 ~~G~~v~l~C~~---~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y--~C~A~N~~G   88 (98)
T cd05870          14 VENGAATLSCKA---EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRY--DCEAASRIG   88 (98)
T ss_pred             cCCCcEEEEEec---ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEE--EEEEeccCC
Confidence            459999999997   455544444444321110         112221 12235799999999999999  999999999


Q ss_pred             cCCceeeee
Q psy11549        238 RSLPVIWDD  246 (261)
Q Consensus       238 ~~~~s~~~~  246 (261)
                      ....+..+.
T Consensus        89 ~~~~~~~l~   97 (98)
T cd05870          89 GHQKSMYLD   97 (98)
T ss_pred             cceeEEEEe
Confidence            888776664

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.67  E-value=5.8e-07  Score=58.53  Aligned_cols=83  Identities=17%  Similarity=0.292  Sum_probs=53.0

Q ss_pred             EEeeCCCcEEEEEEEeeCC---CCceeEEEEcCCc-------------cccccCC----ceEEe----CCceeEEEEecC
Q psy11549         69 VGASRSESVDIHCAVEADP---PARSFKWKFNNSG-------------ETLDVGS----ERFSS----GSRGSMLRYTPV  124 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~-------------~~~~~~~----~~~~~----~~~~~~l~i~~~  124 (261)
                      +.+..|+.+.|.|......   ....+.|.+....             .......    .+...    .....++.|.++
T Consensus         8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv   87 (116)
T cd05879           8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL   87 (116)
T ss_pred             EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence            5677999999999987643   2348999442111             1110011    12221    234568999999


Q ss_pred             CCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549        125 TELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus       125 ~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      ..+|.|.|+|.+.|..+.......+.+
T Consensus        88 ~~sD~G~Y~C~v~n~p~~~~~~~~~~l  114 (116)
T cd05879          88 DYTDNGTFTCDVKNPPDIVGKSSQVTL  114 (116)
T ss_pred             CcccCEEEEEEEEcCCCcCCceeEEEE
Confidence            999999999999998664443334443

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.67  E-value=6.8e-08  Score=61.65  Aligned_cols=55  Identities=38%  Similarity=0.593  Sum_probs=39.6

Q ss_pred             CCCCeeccC----CCCceEEEECCeEEEcc-----CCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAH----NTSARIILSNQSLVLQK-----VSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~----~~~~~~~~~~~~L~i~~-----~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||||.++..    ...+.....++.+.+..     ++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        36 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          36 LKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEccccceecceEEEEe
Confidence            578988864    22334445565544333     37899999999999999996677788776

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.66  E-value=6.5e-08  Score=58.08  Aligned_cols=58  Identities=34%  Similarity=0.595  Sum_probs=41.1

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      +.|.|.+.+.+++..+.|+ ...  . .............+.|.|.++..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~-~~~--~-~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY-DSN--P-SFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE-TEE--E-EEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE-ecC--C-ceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            9999999998855599998 110  0 01111122333455799999999999999999986

...

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.66  E-value=8e-08  Score=59.88  Aligned_cols=56  Identities=25%  Similarity=0.474  Sum_probs=41.6

Q ss_pred             CCCCeeccCCC--CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNT--SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||||..+....  ..+.....+.|.|.+++.+|+|.|+|.|.+..+.....++.|.|.
T Consensus        30 ~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~   87 (89)
T cd04979          30 LFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL   87 (89)
T ss_pred             EECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence            46777775432  234455566899999999999999999998876655667777774

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.65  E-value=5.7e-07  Score=54.80  Aligned_cols=77  Identities=19%  Similarity=0.315  Sum_probs=53.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|...+...  .+.|++++..  +.. +.++.....  -|.|..+..+|+|.|.|.+.-. |-......
T Consensus         6 ~tv~~g~~v~L~C~~~s~~A--~v~W~~ng~~--l~~-~~r~~~~~~--GLlI~~~~~~dsG~Y~C~s~E~-gf~~~~~~   77 (85)
T cd05872           6 RTVAPGADVVLPCQLRSNLA--SPVWLFNGTP--LNA-QFSYRVGTD--GLLILVTSPEHSGTYRCYSEEE-GFQQLVAS   77 (85)
T ss_pred             EEEecCCCEEEECCCCCCCc--cEEEEECCcc--cCC-CcceEEeCC--CCEEEECCHhhCEEEEEEEecC-CCeEEEEE
Confidence            66789999999999988643  7999998864  222 233333322  3789999999999999998743 33333334


Q ss_pred             EEEEe
Q psy11549        149 YQVVL  153 (261)
Q Consensus       149 ~~v~~  153 (261)
                      +.+.+
T Consensus        78 y~l~v   82 (85)
T cd05872          78 YSLNV   82 (85)
T ss_pred             EEEEE
Confidence            44443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.65  E-value=8.5e-07  Score=57.23  Aligned_cols=74  Identities=20%  Similarity=0.297  Sum_probs=49.3

Q ss_pred             CCCcEEEEEEEeeCC-----CCceeEEEEcCCccc-----c-cc---------CCceEEeC---CceeEEEEecCCCCcC
Q psy11549         73 RSESVDIHCAVEADP-----PARSFKWKFNNSGET-----L-DV---------GSERFSSG---SRGSMLRYTPVTELDY  129 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~-----~~~~~~W~~~~~~~~-----~-~~---------~~~~~~~~---~~~~~l~i~~~~~~d~  129 (261)
                      .|++++|+|.....+     ....+.|++...+..     + ..         ...++...   ....+|.|.++..+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            488999999987663     233699998542210     0 00         01222321   2356899999999999


Q ss_pred             eEEEEEEEcCCceEEee
Q psy11549        130 GTLSCAAQNAIGTQVTP  146 (261)
Q Consensus       130 g~y~C~~~~~~~~~~~~  146 (261)
                      |.|.|.+.+..+.....
T Consensus        81 G~Y~C~v~~~~~~~~~~   97 (106)
T cd05877          81 GRYRCEVIDGLEDESVV   97 (106)
T ss_pred             EEEEEEEEecccceEEE
Confidence            99999999876665553

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.65  E-value=2.4e-08  Score=61.16  Aligned_cols=49  Identities=22%  Similarity=0.347  Sum_probs=38.1

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||||+.+..      ...+..|.|.+++.+|+|.|+|.+.+..+...|..+.|+|
T Consensus        35 ~k~g~~~~~------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          35 YRDGKAKKY------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             EECCeEccc------cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            456665531      1235689999999999999999999999887777777765

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=98.65  E-value=2.9e-07  Score=57.24  Aligned_cols=74  Identities=9%  Similarity=0.062  Sum_probs=50.5

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      ..|+.+.|.|.+   .+.|..-..|++............ .....|.|.+++.+|+|.|  +|.|.|..|....+..+.+
T Consensus        14 ~~g~~v~l~C~~---~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y--~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          14 LKGQNVTLECFA---LGNPVPQIKWRKVDGSMPSSAEIS-MSGAVLKIPNIQFEDEGTY--ECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             eCCCcEEEEEEe---eEeCCCEEEEEECCCcCCCccEEE-EeCCEEEECCCCcccCEEE--EEEEEECCCcEEEEEEEEE
Confidence            459999999997   344533334445433221111111 2457899999999999999  9999999998877766654

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=98.64  E-value=8.7e-08  Score=58.78  Aligned_cols=42  Identities=21%  Similarity=0.455  Sum_probs=35.1

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCC
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      +|||++|..+.. +....++.|.|.+++.+|+|.|+|.+.+..
T Consensus        30 ~~ng~~i~~~~~-r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          30 KFDGKVLTPESA-KYLLYRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EECCEECCCCCc-eEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            489999986544 455677899999999999999999998774

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.63  E-value=3.7e-07  Score=55.87  Aligned_cols=72  Identities=19%  Similarity=0.227  Sum_probs=45.1

Q ss_pred             EEEEEEEeeC-CCCceeEEEEcCCccccccCCceEE--eCC----ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         77 VDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFS--SGS----RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        77 ~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~--~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      +.|.|.+.+. |.+ .+.|++++..  +........  ..+    ..+.|.+.....+|.|.|+|.|.+..........+
T Consensus         2 ~~L~C~v~g~~P~~-~v~W~~~g~~--l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~   78 (82)
T cd05759           2 YNLTCRARGAKPAA-EIIWFRDGEV--LDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSV   78 (82)
T ss_pred             EEEEEEEeCccCCC-EEEEEECCEE--ccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEE
Confidence            6899999985 555 8999998742  221111111  111    13467787777788899999999875443333344


Q ss_pred             EE
Q psy11549        150 QV  151 (261)
Q Consensus       150 ~v  151 (261)
                      ++
T Consensus        79 ~l   80 (82)
T cd05759          79 TL   80 (82)
T ss_pred             EE
Confidence            44

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.63  E-value=1e-07  Score=59.73  Aligned_cols=53  Identities=15%  Similarity=0.163  Sum_probs=38.7

Q ss_pred             CCCCeeccCCC-----CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549          1 MAGGIPLAHNT-----SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR   54 (261)
Q Consensus         1 ~~ng~~l~~~~-----~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~   54 (261)
                      ||||.++....     ..++...+..|.|.++..+|+|.|+|++.|..... ...+.|+
T Consensus        46 yK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~-~~~i~l~  103 (104)
T cd05896          46 YKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCM-KVSMSLT  103 (104)
T ss_pred             EECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCCcce-EEEEEEE
Confidence            46766664322     24778889999999999999999999999887544 3334444

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.62  E-value=2.8e-07  Score=58.31  Aligned_cols=81  Identities=19%  Similarity=0.272  Sum_probs=52.4

Q ss_pred             eCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC--------------CceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG--------------SERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~--------------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      ..|++++|+|..........+.|++..........              ..++.......+|.|.++..+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            37999999998765222337999975321111110              1133444556789999999999999999999


Q ss_pred             cCCceEEeeEEEEEEe
Q psy11549        138 NAIGTQVTPCLYQVVL  153 (261)
Q Consensus       138 ~~~~~~~~~~~~~v~~  153 (261)
                      ...+.... ..+.+.|
T Consensus        82 ~~~~~~~~-~~f~L~v   96 (97)
T cd05775          82 TKNGVTIT-KEFTLHI   96 (97)
T ss_pred             cCCCCeEE-EEEEEEe
Confidence            87655433 2454443

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.62  E-value=4.3e-07  Score=56.98  Aligned_cols=68  Identities=18%  Similarity=0.118  Sum_probs=46.7

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCcccccc---------------CCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDV---------------GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---------------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |++|+|.|........ .+.|++.........               ...++..... .+|.|.++..+|+|.|+|.+..
T Consensus         1 G~~VtL~c~~~~~~~~-~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-~sL~I~~l~~~DsG~Y~c~v~~   78 (92)
T cd05741           1 GESVTLPVSNLPENLQ-EITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-GSLLIQNLTKEDSGTYTLQIIS   78 (92)
T ss_pred             CCcEEEEcccCCCCCE-EEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-ceEEEccCCchhcEEEEEEEEc
Confidence            7899999988764444 899998654321110               1112233333 6899999999999999999998


Q ss_pred             CCceE
Q psy11549        139 AIGTQ  143 (261)
Q Consensus       139 ~~~~~  143 (261)
                      ..+..
T Consensus        79 ~~~~~   83 (92)
T cd05741          79 TNGVT   83 (92)
T ss_pred             CCCcE
Confidence            76443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.61  E-value=8.2e-07  Score=57.41  Aligned_cols=79  Identities=22%  Similarity=0.273  Sum_probs=50.8

Q ss_pred             CCCcEEEEEEEeeCCC-----------CceeEEEEcCCccc---cc----------cCCceEEe-----CCceeEEEEec
Q psy11549         73 RSESVDIHCAVEADPP-----------ARSFKWKFNNSGET---LD----------VGSERFSS-----GSRGSMLRYTP  123 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-----------~~~~~W~~~~~~~~---~~----------~~~~~~~~-----~~~~~~l~i~~  123 (261)
                      .|++++|+|.......           ...|.|++-..+..   +.          ....++..     ......|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            4899999999875431           23899997432111   00          01113333     22567899999


Q ss_pred             CCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549        124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus       124 ~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      +..+|+|.|+|.+.+.......  .+.+.|
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~--~v~l~v  108 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYD--TVEVQV  108 (112)
T ss_pred             cccccCEEEEEEEecCCCCcee--EEEEEE
Confidence            9999999999999976555444  344443

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>KOG3515|consensus

Probab=98.60  E-value=4.2e-07  Score=75.93  Aligned_cols=157  Identities=17%  Similarity=0.218  Sum_probs=98.4

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+..|+.+.|.|.+.+.|++.++.|++...+..    .....+...  .|.......+..+.|.|++.|..+..... .+
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~c~a~ns~~~~~~~-~~   90 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADP--TLVTTGDVRDTVAELNCRAFNSVGMPSRC-PM   90 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCC--ceeeecchhhhhhhhhhhhcccccCceec-ce
Confidence            678999999999999999988999999876533    212222222  57777888888899999999986655443 44


Q ss_pred             EEEeCCCCC-CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-------eeEEE---ecCCCCcEEEcCC
Q psy11549        150 QVVLAGKPQ-PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-------LLVNL---TNLDTPAFTLEDL  218 (261)
Q Consensus       150 ~v~~~~~p~-~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~---~~~~~~~~~i~~~  218 (261)
                      .+.+..+|. .+.........+..+.+.|.....+.....+.|++.......       ..+..   .......+.+...
T Consensus        91 ~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~  170 (741)
T KOG3515|consen   91 ILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVS  170 (741)
T ss_pred             eeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEE
Confidence            455555554 333334445668889999965333333344666654311110       00000   0011234444444


Q ss_pred             CCCCccEEEEEEEEEcC
Q psy11549        219 GLDGTVLMRVVISGVNA  235 (261)
Q Consensus       219 ~l~~~~~Y~~~~~a~N~  235 (261)
                      +..+.+.|  +|.|.|.
T Consensus       171 Rka~~g~~--tC~A~nr  185 (741)
T KOG3515|consen  171 RKADNGNY--TCPANNR  185 (741)
T ss_pred             EecCCcee--Ecccccc
Confidence            47888889  8889885

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.60  E-value=5.4e-07  Score=58.49  Aligned_cols=71  Identities=18%  Similarity=0.281  Sum_probs=50.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEEe----CCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSS----GSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+..|++++|.|.+...+.. .+.|++...+....           ....++..    ......|.|.++..+|+|.|.
T Consensus         8 v~~~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   86 (109)
T cd04983           8 LSVQEGENVTLNCNYSTSTFY-YLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF   86 (109)
T ss_pred             eEEcCCCCEEEEEEECCCCcc-EEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence            678899999999999877555 89999754221100           11223322    235678999999999999999


Q ss_pred             EEEEcCC
Q psy11549        134 CAAQNAI  140 (261)
Q Consensus       134 C~~~~~~  140 (261)
                      |.+.+..
T Consensus        87 C~~~~~~   93 (109)
T cd04983          87 CALSESG   93 (109)
T ss_pred             EEEecCC
Confidence            9998754

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.58  E-value=1.4e-06  Score=55.58  Aligned_cols=78  Identities=14%  Similarity=0.171  Sum_probs=48.6

Q ss_pred             CCcEEEEEEEeeCCC--CceeEEEEcCCccccc-------c-------CCceEEe-----CCceeEEEEecCCCCcCeEE
Q psy11549         74 SESVDIHCAVEADPP--ARSFKWKFNNSGETLD-------V-------GSERFSS-----GSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        74 g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~-------~-------~~~~~~~-----~~~~~~l~i~~~~~~d~g~y  132 (261)
                      |++++|+|.......  ...+.|++........       .       ...++..     .....+|.|.++..+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            678999998863322  2368888754211110       0       0112222     12356899999999999999


Q ss_pred             EEEEEcCCceEEeeEEEEEEe
Q psy11549        133 SCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus       133 ~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      +|.+.+..+....  .+.+.|
T Consensus        81 ~C~v~~~~~~~~~--~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEA--TVELKV   99 (100)
T ss_pred             EEEEecCCcEEEE--EEEEEE
Confidence            9999987665444  444443

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.58  E-value=1.4e-06  Score=56.22  Aligned_cols=74  Identities=19%  Similarity=0.342  Sum_probs=48.8

Q ss_pred             CCCcEEEEEEEeeCC-----CCceeEEEEcC---Ccc-ccc--cCC-------c--eEE---eCCceeEEEEecCCCCcC
Q psy11549         73 RSESVDIHCAVEADP-----PARSFKWKFNN---SGE-TLD--VGS-------E--RFS---SGSRGSMLRYTPVTELDY  129 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~-----~~~~~~W~~~~---~~~-~~~--~~~-------~--~~~---~~~~~~~l~i~~~~~~d~  129 (261)
                      .|++++|.|.....+     ....+.|++..   ... .+.  ...       .  +..   ......+|.|.++..+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999988653     23489999862   111 000  000       0  111   123567899999999999


Q ss_pred             eEEEEEEEcCCceEEee
Q psy11549        130 GTLSCAAQNAIGTQVTP  146 (261)
Q Consensus       130 g~y~C~~~~~~~~~~~~  146 (261)
                      |.|.|.+.+..+.....
T Consensus        81 G~Y~C~v~~~~~~~~~~   97 (106)
T cd05714          81 GRYRCEVIDGIEDEQDT   97 (106)
T ss_pred             EEEEEEEEcCCCceEEE
Confidence            99999999876554553

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.56  E-value=2.1e-06  Score=55.57  Aligned_cols=73  Identities=19%  Similarity=0.278  Sum_probs=48.5

Q ss_pred             CCCcEEEEEEEeeCCC---------CceeEEEEcCCccccc-------------cCCceEEe-----CCceeEEEEecCC
Q psy11549         73 RSESVDIHCAVEADPP---------ARSFKWKFNNSGETLD-------------VGSERFSS-----GSRGSMLRYTPVT  125 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~---------~~~~~W~~~~~~~~~~-------------~~~~~~~~-----~~~~~~l~i~~~~  125 (261)
                      .|++++|+|.....+.         ...+.|++...+....             ....++..     ......|.|.++.
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            4889999999876542         2479999853211110             01112222     2345689999999


Q ss_pred             CCcCeEEEEEEEcCCceEEe
Q psy11549        126 ELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus       126 ~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .+|+|.|.|.+.........
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~  100 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQD  100 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceE
Confidence            99999999999876544444

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>PHA03376 BARF1; Provisional

Probab=98.55  E-value=7.5e-06  Score=56.44  Aligned_cols=122  Identities=18%  Similarity=0.150  Sum_probs=73.1

Q ss_pred             EEeeCCCcEEEEEEEeeCC--CCceeEEEEcCCc---ccccc-----------CCceEEe--CCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADP--PARSFKWKFNNSG---ETLDV-----------GSERFSS--GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~---~~~~~-----------~~~~~~~--~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+..|+.+.|+|......  ....|.|++.+.+   ..+..           ...++.+  +.++.+|.|.++..+|.|
T Consensus        21 Vta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdG  100 (221)
T PHA03376         21 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG  100 (221)
T ss_pred             hhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCc
Confidence            6677899999999876322  3447999984321   11100           1111222  345668999999999999


Q ss_pred             EEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc
Q psy11549        131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQTFTLELYSASDL  199 (261)
Q Consensus       131 ~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~  199 (261)
                      .|+|.++..........++...      .|..+.+..     ...+...+.|..   ++.|.++..|..+.+.+
T Consensus       101 tY~C~fQkge~~~~k~ehLt~V------~~~~Lsv~a~~~dFp~~~~~~i~C~s---ggfP~P~~~Wle~~~~~  165 (221)
T PHA03376        101 NYLCRMKLGETEVTKQEHLSVV------KPLTLSVHSERSQFPDFSVLTVTCTV---NAFPHPHVQWLMPEGVE  165 (221)
T ss_pred             eEEEEEEcCCCceeeeeeeeee------ecceEEEEeccccCCCCCeeEEEEec---CCcCCchheeccccCCC
Confidence            9999998754433332233222      111111211     125667889995   88888776666665544

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.51  E-value=6.4e-07  Score=55.90  Aligned_cols=81  Identities=15%  Similarity=0.123  Sum_probs=52.3

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--e-EEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--L-VNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      +|.+..+  ..|+.+.|.|.+   .|.|.+-..|++.......  . ..........|.|.++..+|.|.|  +|.|.|.
T Consensus         6 ~p~~~~v--~~G~~v~l~C~~---~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y--~C~A~N~   78 (90)
T cd04972           6 GPNATVV--YEGGTATIRCTA---EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTV--TCTAENP   78 (90)
T ss_pred             CCcCEEE--cCCCcEEEEEEE---EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEE--EEEEECC
Confidence            4444333  469999999998   3556554445444322110  1 111122335789999999999999  9999999


Q ss_pred             CCcCCceeeee
Q psy11549        236 KGRSLPVIWDD  246 (261)
Q Consensus       236 ~G~~~~s~~~~  246 (261)
                      +|....+..+.
T Consensus        79 ~G~~~~~~~L~   89 (90)
T cd04972          79 VGQANVSVQVT   89 (90)
T ss_pred             CCceeEEEEEe
Confidence            99877765543

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.50  E-value=1.3e-06  Score=56.81  Aligned_cols=70  Identities=21%  Similarity=0.312  Sum_probs=49.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---------------cCCceEEe--C-CceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---------------VGSERFSS--G-SRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~~~~~--~-~~~~~l~i~~~~~~d~g  130 (261)
                      +.+.+|++++|.|.+.+ +.+ .+.||+...+....               ....++..  . .....|.|.++..+|+|
T Consensus         8 ~~v~~G~~v~l~C~~~~-~~~-~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg   85 (110)
T cd05899           8 LIKGRGQSVTLRCSQTS-GHD-NMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA   85 (110)
T ss_pred             eEEcCCCcEEEEEEECC-CCC-EEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence            67889999999999987 444 79999864321111               11223322  1 24568999999999999


Q ss_pred             EEEEEEEcCC
Q psy11549        131 TLSCAAQNAI  140 (261)
Q Consensus       131 ~y~C~~~~~~  140 (261)
                      .|.|.+.+..
T Consensus        86 ~Y~Ca~~~~~   95 (110)
T cd05899          86 VYLCASSLGG   95 (110)
T ss_pred             EEEEEeeCCC
Confidence            9999998643

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.50  E-value=1.3e-06  Score=55.27  Aligned_cols=74  Identities=12%  Similarity=0.149  Sum_probs=49.0

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-------eeEEEe-cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-------LLVNLT-NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~-~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      ..|+.+.|.|.+   .+.|.....|++......       ...... ......|.|.+++.+|+|.|  .|.|.|.+|..
T Consensus        14 ~~g~~v~l~C~~---~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~   88 (96)
T cd05732          14 VELEQITLTCEA---EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY--DCEASNRIGGD   88 (96)
T ss_pred             ecCCcEEEEEEE---eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEe--EEEEEeCCCCc
Confidence            458999999997   344544344444321110       011111 12235799999999999999  99999999998


Q ss_pred             Cceeeee
Q psy11549        240 LPVIWDD  246 (261)
Q Consensus       240 ~~s~~~~  246 (261)
                      ..+..+.
T Consensus        89 ~~s~~l~   95 (96)
T cd05732          89 QQSMYLE   95 (96)
T ss_pred             EEEEEEe
Confidence            7776654

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.50  E-value=3.1e-06  Score=53.72  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=45.6

Q ss_pred             CcEEEEEEEeeCC--CCceeEEEEcCCcccc--------------ccCCceEEeCC---ceeEEEEecCCCCcCeEEEEE
Q psy11549         75 ESVDIHCAVEADP--PARSFKWKFNNSGETL--------------DVGSERFSSGS---RGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        75 ~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~--------------~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      ++++|.|.....+  ....+.|++...+...              .....+.....   ....|.|.++..+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999988765  3337999986532100              00011222211   356899999999999999999


Q ss_pred             EEc-CCceEEe
Q psy11549        136 AQN-AIGTQVT  145 (261)
Q Consensus       136 ~~~-~~~~~~~  145 (261)
                      +.. +.|....
T Consensus        81 v~~~~~g~~~~   91 (98)
T cd05718          81 FATFPQGNRQK   91 (98)
T ss_pred             EEeCCCCcEEE
Confidence            875 4555554

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.49  E-value=1.1e-06  Score=55.21  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=46.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      ..+..|++++|.|.... ... .+.|++.+........... ......+.|.|..++.+|+|.|.|....
T Consensus        10 ~vV~~G~~VTL~C~~~~-~~~-~f~l~k~g~~~~~~~~~~~-~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711          10 PVVPSGENVTLQCHSDI-RFD-RFILYKEGRSKPVLHLYEK-HHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CccCCCCeEEEEEecCC-CCC-EEEEEECCCCCCceecccc-cCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            34679999999998765 223 7999998754222110000 1123355789999999999999999764

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.48  E-value=6.8e-07  Score=52.58  Aligned_cols=67  Identities=12%  Similarity=0.194  Sum_probs=43.2

Q ss_pred             CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceee
Q psy11549        170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIW  244 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~  244 (261)
                      |+.+.|.|.+   .|.|.+.+.|++........... ......+.|.+  +.+.|.|  +|.|.|.+|..+.+..
T Consensus         1 G~~v~L~C~a---~G~P~P~v~W~k~g~~l~~~~~~-~~~~~~L~i~~--~~d~G~Y--~C~A~N~~G~~~~~a~   67 (69)
T cd05739           1 GGSVNLTCVA---VGAPMPYVKWMKGGEELTKEDEM-PVGRNVLELTN--IYESANY--TCVAISSLGMIEATAQ   67 (69)
T ss_pred             CCeEEEEEEe---eecCCCEEEEEECCEECCCccce-ecCccEEEEec--cccCeeE--EEEEEeCCCEEEEEEE
Confidence            5679999997   45565544455543222111111 12335788999  7899999  9999999997665543

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.48  E-value=2.3e-06  Score=55.04  Aligned_cols=72  Identities=22%  Similarity=0.291  Sum_probs=49.2

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--------------cCCceEEe--CC--ceeEEEEecCCCCcCeE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--------------VGSERFSS--GS--RGSMLRYTPVTELDYGT  131 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~~~~~--~~--~~~~l~i~~~~~~d~g~  131 (261)
                      .+..|++++|.|.+........+.|++...+....              ....++..  ..  ....|.|.++..+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            45689999999999876333379999854311100              01122221  11  46689999999999999


Q ss_pred             EEEEEEcCCc
Q psy11549        132 LSCAAQNAIG  141 (261)
Q Consensus       132 y~C~~~~~~~  141 (261)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999997654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.47  E-value=1.3e-06  Score=54.48  Aligned_cols=73  Identities=19%  Similarity=0.189  Sum_probs=48.5

Q ss_pred             CCeEEEEeecCCCCCCCeEEEEEEEeCC---c------cce-eE-EE-----ecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        170 TSSVHISCTPGYDGGLPQTFTLELYSAS---D------LNL-LV-NL-----TNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~---~------~~~-~~-~~-----~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      |+.++|.|.+   .+.|.+-+.|++...   .      .+. .. ..     .......+.|.+++.+|.|.|  +|.|.
T Consensus         1 G~~v~l~C~v---~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~A~   75 (90)
T cd04974           1 GSDVEFHCKV---YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEY--TCLAG   75 (90)
T ss_pred             CCcEEEEEEE---eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEE--EEEee
Confidence            5678999997   455544444444321   0      010 00 00     011235789999999999999  99999


Q ss_pred             cCCCcCCceeeeee
Q psy11549        234 NAKGRSLPVIWDDF  247 (261)
Q Consensus       234 N~~G~~~~s~~~~~  247 (261)
                      |.+|....+..+.|
T Consensus        76 N~~G~~~~sa~L~V   89 (90)
T cd04974          76 NSIGPSHHSAWLTV   89 (90)
T ss_pred             cccCcccCCEEEEe
Confidence            99999988888765

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.46  E-value=2.7e-06  Score=55.60  Aligned_cols=74  Identities=20%  Similarity=0.377  Sum_probs=48.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCC---CceeEEEEcC--Cccc--c-c-------cCCc----eEE----eCCceeEEEEecCC
Q psy11549         69 VGASRSESVDIHCAVEADPP---ARSFKWKFNN--SGET--L-D-------VGSE----RFS----SGSRGSMLRYTPVT  125 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~--~~~~--~-~-------~~~~----~~~----~~~~~~~l~i~~~~  125 (261)
                      +.+..|++++|.|.....++   ...+.|++..  ....  + .       ....    +..    ......+|.|.++.
T Consensus         8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~   87 (115)
T cd05880           8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ   87 (115)
T ss_pred             EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence            67889999999999875432   2369997521  1111  0 0       0111    111    12235679999999


Q ss_pred             CCcCeEEEEEEEcCCce
Q psy11549        126 ELDYGTLSCAAQNAIGT  142 (261)
Q Consensus       126 ~~d~g~y~C~~~~~~~~  142 (261)
                      .+|+|.|.|.+.+..+.
T Consensus        88 ~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          88 PTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             hhhCEEEEEEEEeCCCC
Confidence            99999999999986553

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.46  E-value=4.5e-07  Score=54.88  Aligned_cols=72  Identities=13%  Similarity=0.161  Sum_probs=46.6

Q ss_pred             CCeEEEEeecCCCCCCCeEEEEEEEeCCccc--eeEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeee
Q psy11549        170 TSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~  246 (261)
                      |+.+.|.|.+   .+.|.+.+.|++......  ..... .......|.|.++..+|.|.|  +|.|.|..|......-+.
T Consensus         1 G~~v~l~C~~---~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVA---TGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAY--TCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEE---EEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEE--EEEEEecCCEEEecccEE
Confidence            5789999997   455544444455432211  12222 222346799999999999999  999999999665544443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.46  E-value=1.6e-06  Score=53.48  Aligned_cols=78  Identities=14%  Similarity=0.076  Sum_probs=51.6

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      +|..+.+  ..|+.++|.|.+  .++.|.....|++.....+...   ......|.|.+++.+|.|.|  .|.|.|..|.
T Consensus         7 ~p~~~~v--~~G~~v~L~C~~--~~~~~~~~i~W~~~~~~~~~~~---~~~~~~L~I~~v~~~DsG~Y--~C~a~n~~g~   77 (85)
T cd05754           7 EPRSQEV--RPGADVSFICRA--KSKSPAYTLVWTRVGGGLPSRA---MDFNGILTIRNVQLSDAGTY--VCTGSNMLDT   77 (85)
T ss_pred             CCCceEE--cCCCCEEEEEEc--CCCCCCcEEEEEECCCcCCCcc---cccCCEEEECCCCHHHCEEE--EEEEeccCCe
Confidence            3443344  459999999997  3334544445555443322111   12346899999999999999  9999999998


Q ss_pred             CCceeee
Q psy11549        239 SLPVIWD  245 (261)
Q Consensus       239 ~~~s~~~  245 (261)
                      ...+..+
T Consensus        78 ~~~~~~l   84 (85)
T cd05754          78 DEATATL   84 (85)
T ss_pred             EeEEEEE
Confidence            7766543

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.45  E-value=7.1e-07  Score=56.96  Aligned_cols=44  Identities=25%  Similarity=0.420  Sum_probs=35.5

Q ss_pred             CCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549         11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR   54 (261)
Q Consensus        11 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~   54 (261)
                      .+|..+..+++|.|.+++.+|+|.|+|.+.+.........+.|.
T Consensus        61 ~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          61 SGRETIYPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             CCcEEEeCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEE
Confidence            45778888999999999999999999999888755434455554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.44  E-value=2.4e-06  Score=55.05  Aligned_cols=71  Identities=20%  Similarity=0.314  Sum_probs=48.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEEe--CCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSS--GSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|.+.+......+.|++...+....           ....++..  ......|.|.++..+|+|.|.|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca   89 (106)
T cd04980          10 LSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQ   89 (106)
T ss_pred             EEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEE
Confidence            667899999999998765522379999754221110           00123332  23445799999999999999999


Q ss_pred             EEcC
Q psy11549        136 AQNA  139 (261)
Q Consensus       136 ~~~~  139 (261)
                      +.+.
T Consensus        90 ~~~~   93 (106)
T cd04980          90 QYGT   93 (106)
T ss_pred             EeCC
Confidence            8653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.43  E-value=1.3e-06  Score=55.33  Aligned_cols=74  Identities=11%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             cCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-------eeEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549        169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLN-------LLVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      .|+.++|.|.+   .|.|.+...|++......       ..... .......|.|.+++.+|.|.|  +|.|.|.+|...
T Consensus        16 ~g~~v~l~C~~---~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y--~C~A~N~~G~~~   90 (97)
T cd05869          16 LEEQITLTCEA---SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY--LCTASNTIGQDS   90 (97)
T ss_pred             cCCCEEEEEEe---eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEE--EEEEecCCCCee
Confidence            37999999997   344544333444322110       01111 111225799999999999999  999999999988


Q ss_pred             ceeeeee
Q psy11549        241 PVIWDDF  247 (261)
Q Consensus       241 ~s~~~~~  247 (261)
                      .+..+.|
T Consensus        91 ~~~~l~v   97 (97)
T cd05869          91 QSMYLEV   97 (97)
T ss_pred             EEEEEEC
Confidence            8877654

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.42  E-value=1.5e-06  Score=53.02  Aligned_cols=72  Identities=13%  Similarity=0.067  Sum_probs=46.5

Q ss_pred             CCeEEEEeecCCCCCCCeEEEEEEEeCC-ccceeE-------EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549        170 TSSVHISCTPGYDGGLPQTFTLELYSAS-DLNLLV-------NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP  241 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~  241 (261)
                      |+.+.|.|.+   .+.|.+...|++... ......       .........|.|.++..+|.|.|  .|.|.|..|....
T Consensus         1 G~~v~l~C~~---~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y--~C~a~N~~G~~~~   75 (81)
T cd05765           1 GETASFHCDV---TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLY--TCTARNSGGLLRA   75 (81)
T ss_pred             CCcEEEEeec---cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEE--EEEEecCCceEEE
Confidence            5788999986   455544444555421 111000       11112336799999999999999  9999999998766


Q ss_pred             eeeee
Q psy11549        242 VIWDD  246 (261)
Q Consensus       242 s~~~~  246 (261)
                      +..+.
T Consensus        76 ~~~l~   80 (81)
T cd05765          76 NFPLS   80 (81)
T ss_pred             EEEEe
Confidence            65543

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.40  E-value=9.6e-07  Score=56.05  Aligned_cols=52  Identities=15%  Similarity=0.282  Sum_probs=37.4

Q ss_pred             CCCCeeccCCC-CceEEEEC-------CeEEEccCCC-CCCEeEEEEEEeCCCcceeeeEEE
Q psy11549          1 MAGGIPLAHNT-SARIILSN-------QSLVLQKVSR-QSAGTYKCSAINTKGEATSNQLKL   53 (261)
Q Consensus         1 ~~ng~~l~~~~-~~~~~~~~-------~~L~i~~~~~-~D~G~Y~C~~~~~~~~~~s~~~~l   53 (261)
                      ++||.+|...+ .+..+...       ++|.|.++.. +|.|.|+|.|.|..|.. ...+.|
T Consensus        37 ~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~-~~~~~L   97 (98)
T cd05758          37 TWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG-TAIISL   97 (98)
T ss_pred             EECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc-cEEEEe
Confidence            36788886432 34444332       3899999999 55999999999999987 444544

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.40  E-value=4.5e-06  Score=54.77  Aligned_cols=74  Identities=22%  Similarity=0.411  Sum_probs=47.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCC---CceeEEEEcCCccc-----ccc--------CCceE----Ee----CCceeEEEEecC
Q psy11549         69 VGASRSESVDIHCAVEADPP---ARSFKWKFNNSGET-----LDV--------GSERF----SS----GSRGSMLRYTPV  124 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~-----~~~--------~~~~~----~~----~~~~~~l~i~~~  124 (261)
                      +.+..|++++|.|.......   ...+.|++...+..     +..        ...++    ..    .....+|.|.++
T Consensus         8 v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   87 (116)
T cd05715           8 VYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNL   87 (116)
T ss_pred             EEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeC
Confidence            56779999999998865432   23699986332100     000        11111    11    123468999999


Q ss_pred             CCCcCeEEEEEEEcCCce
Q psy11549        125 TELDYGTLSCAAQNAIGT  142 (261)
Q Consensus       125 ~~~d~g~y~C~~~~~~~~  142 (261)
                      ..+|+|.|.|.+.+..+.
T Consensus        88 ~~~D~G~Y~C~v~~~~~~  105 (116)
T cd05715          88 QFTDNGTYTCDVKNPPDI  105 (116)
T ss_pred             CcccCEEEEEEEEeCCCC
Confidence            999999999999986543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.39  E-value=3.3e-06  Score=53.46  Aligned_cols=76  Identities=16%  Similarity=0.206  Sum_probs=47.2

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCcccccc------C--------CceEE---eCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDV------G--------SERFS---SGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~------~--------~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      |++++|.|..........+.|++........+      .        ..+..   .....++|.|.++..+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            78999999876554444699987432111000      0        01111   1234568999999999999999998


Q ss_pred             Ec-CCceEEeeEEE
Q psy11549        137 QN-AIGTQVTPCLY  149 (261)
Q Consensus       137 ~~-~~~~~~~~~~~  149 (261)
                      .. +.|.......|
T Consensus        81 ~~~p~g~~~~~~~L   94 (97)
T cd05846          81 NTFPDGSKSGTMCL   94 (97)
T ss_pred             EeCCCCCeeeEEEE
Confidence            74 45554443333

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.39  E-value=8.3e-06  Score=52.53  Aligned_cols=78  Identities=22%  Similarity=0.264  Sum_probs=48.4

Q ss_pred             CCcEEEEEEEeeCC------CCceeEEEEcC--Cccc-c-------------ccCCceEEeC-----CceeEEEEecCCC
Q psy11549         74 SESVDIHCAVEADP------PARSFKWKFNN--SGET-L-------------DVGSERFSSG-----SRGSMLRYTPVTE  126 (261)
Q Consensus        74 g~~~~l~C~~~~~~------~~~~~~W~~~~--~~~~-~-------------~~~~~~~~~~-----~~~~~l~i~~~~~  126 (261)
                      |++++|+|...-.|      ....+.|.+-.  .+.. .             .....+..+.     ....+|.|.++..
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            78899999976432      13489998742  1100 0             0011122221     2467899999999


Q ss_pred             CcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549        127 LDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      +|+|.|.|.+.........  .+.+.|
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~--~v~L~V  106 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQD--TVPLEV  106 (110)
T ss_pred             HHCEEEEEEEEECCcccEE--EEEEEE
Confidence            9999999999985544444  444443

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.39  E-value=2.9e-06  Score=53.84  Aligned_cols=68  Identities=19%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             EeeCCCcEEEEEEEeeC--CCCceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEE
Q psy11549         70 GASRSESVDIHCAVEAD--PPARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      .+.+|++++|.|.+...  ... .+.|++...+....           ....++.  .......|.|.++..+|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~-~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGN-YVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCC-CEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence            35689999999998765  233 69999754322211           0012333  23345679999999999999999


Q ss_pred             EEEc
Q psy11549        135 AAQN  138 (261)
Q Consensus       135 ~~~~  138 (261)
                      .+.+
T Consensus        81 ~~~~   84 (98)
T cd04984          81 QVWD   84 (98)
T ss_pred             EEcc
Confidence            9875

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.38  E-value=5.2e-06  Score=51.96  Aligned_cols=76  Identities=14%  Similarity=0.244  Sum_probs=48.5

Q ss_pred             CcEEEEEEEeeCCCCceeEEEEcCCcccccc--------------CCceEEe---CCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         75 ESVDIHCAVEADPPARSFKWKFNNSGETLDV--------------GSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        75 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--------------~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      ++++|+|.....+....+.|.+........+              ...+...   .....+|.|.++..+|.|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            4689999988655555899987532111100              0012222   2335689999999999999999975


Q ss_pred             -cCCceEEeeEEEE
Q psy11549        138 -NAIGTQVTPCLYQ  150 (261)
Q Consensus       138 -~~~~~~~~~~~~~  150 (261)
                       .+.|....+..++
T Consensus        81 tfP~G~~~~~~~l~   94 (96)
T cd05887          81 TFPLGNTQSSTTVT   94 (96)
T ss_pred             eCCCCCeeEEEEEE
Confidence             5567666644443

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.37  E-value=2.2e-06  Score=53.44  Aligned_cols=42  Identities=29%  Similarity=0.596  Sum_probs=32.5

Q ss_pred             eEEEECCeEEEccCCCCCCEeEEEEEEe-CCCcceeeeEEEEEE
Q psy11549         14 RIILSNQSLVLQKVSRQSAGTYKCSAIN-TKGEATSNQLKLRVK   56 (261)
Q Consensus        14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~-~~~~~~s~~~~l~V~   56 (261)
                      +....+++|.|.+++.+|+|.|+|.+.+ ..+.. ...+.|+|.
T Consensus        47 r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~~~~~l~v~   89 (91)
T cd05871          47 RLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-LAKYTLHVI   89 (91)
T ss_pred             cEEEecCeEEEeeCChhHCEEEEEEEEccCCeEE-EEEEEEEEe
Confidence            4455677899999999999999999985 44444 456777775

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.36  E-value=1.5e-06  Score=53.40  Aligned_cols=38  Identities=18%  Similarity=0.477  Sum_probs=30.7

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCC-cceeeeEEEEEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRVK   56 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~-~~~s~~~~l~V~   56 (261)
                      ..+|.|.+++.+|+|.|+|.|.|..+ ...+.++.|+|.
T Consensus        45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            34899999999999999999998765 334667777774

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.36  E-value=6.3e-06  Score=54.11  Aligned_cols=69  Identities=23%  Similarity=0.367  Sum_probs=48.3

Q ss_pred             EEeeCCCcEEEEEEEee--CCCCceeEEEEcCCccccc----------------cCCceEEe--CC--ceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVEA--DPPARSFKWKFNNSGETLD----------------VGSERFSS--GS--RGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~--~~~~~~~~W~~~~~~~~~~----------------~~~~~~~~--~~--~~~~l~i~~~~~  126 (261)
                      +.+..|++++|.|.+.+  .+.+ .+.|++...+....                ....++..  ..  ....|.|.++..
T Consensus         8 ~~~~~G~~v~l~C~~~~~~~~~~-~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   86 (116)
T cd04982           8 ITREESKSVTISCKVSGIDFSTT-YIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK   86 (116)
T ss_pred             EEeCCCCCEEEEEEEeCCCcccc-EEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence            67889999999999877  4444 79999853221110                01223332  22  456899999999


Q ss_pred             CcCeEEEEEEEc
Q psy11549        127 LDYGTLSCAAQN  138 (261)
Q Consensus       127 ~d~g~y~C~~~~  138 (261)
                      +|+|.|.|.+..
T Consensus        87 ~Dsg~Y~C~~~~   98 (116)
T cd04982          87 EDSATYYCAYWE   98 (116)
T ss_pred             HHCEEEEEEEec
Confidence            999999999874

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.34  E-value=1.8e-06  Score=53.08  Aligned_cols=76  Identities=7%  Similarity=-0.054  Sum_probs=47.3

Q ss_pred             CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-----E--EecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549        170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-----N--LTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      |+.+.|.|.+..+...++.+.|.+..........     .  ........|+|.++++.|.|.|  .|.|.|..|....+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y--~C~a~n~~~~~~~s   78 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTY--TCAASSGTMDQKES   78 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEE--EEEEccCCCceEEE
Confidence            5789999998222113444555432211110000     0  0011235799999999999999  99999999988877


Q ss_pred             eeeee
Q psy11549        243 IWDDF  247 (261)
Q Consensus       243 ~~~~~  247 (261)
                      .-+.+
T Consensus        79 ~~v~v   83 (84)
T cd05742          79 TKVNI   83 (84)
T ss_pred             EEEEE
Confidence            76654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.34  E-value=3e-06  Score=53.50  Aligned_cols=37  Identities=24%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeC-CCcceeeeEEEEE
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRV   55 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V   55 (261)
                      .+.+|.|.+++.+|.|.|+|.+.+. .|.. +..+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~-~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNR-ESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCe-EEEEEEEE
Confidence            4579999999999999999999994 5554 77788877

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>KOG3515|consensus

Probab=98.33  E-value=1.1e-05  Score=67.88  Aligned_cols=222  Identities=17%  Similarity=0.107  Sum_probs=124.6

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcce-eeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~-s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      .+........|.|.|+|.+.+...... +..+.|.+...|.............+++.....-.+.+.|....+.|.+...
T Consensus       362 ~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~  441 (741)
T KOG3515|consen  362 SHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLY  441 (741)
T ss_pred             EeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecce
Confidence            567778899999999999987765442 2335556666665443332223344455444444444666655899988663


Q ss_pred             ccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC-CCCcceEEeecCCeEEEEee
Q psy11549        100 GETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ-PPQNCSVRNETTSSVHISCT  178 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~-~p~~~~v~~~~~~~~~l~c~  178 (261)
                      . ........+............++...|.|.|.|.++|..|....  .+...+.+.|. .+.+..+....++++...|.
T Consensus       442 ~-~~~~~g~~~~v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~--~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~  518 (741)
T KOG3515|consen  442 K-LSQVDGGVVRVGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQA--YLLLGVHTSPHNHHLQDQVEGATGNSVDGECM  518 (741)
T ss_pred             e-cccccCceEEeeccccccccceeeeccCCcceeeeccCCCceee--EEeeccccCCcccccccccccCCCCcccceee
Confidence            2 22223333333333334446678899999999999998887766  34444444443 44444455556777888888


Q ss_pred             cCCCCCCCeEEEEEEEeCCccceeE-----EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        179 PGYDGGLPQTFTLELYSASDLNLLV-----NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       179 ~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      . .+......++-|.+.........     .........+.+..  ......|+..|.+.|..--+..+..+.+.
T Consensus       519 q-~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~d~~~~pA~~~~~l~~~  590 (741)
T KOG3515|consen  519 Q-DEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSG--NSSLQASETACVVDGSSPPAGLSLVLKAY  590 (741)
T ss_pred             c-cccccchhhhcccccCCCCcccccccccccccCCccceeecc--cccccccceEEeecCCCCccccceEEEec
Confidence            6 12222233555555543332111     11112335566666  33333344488888833244444444444

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.32  E-value=9.6e-06  Score=51.21  Aligned_cols=71  Identities=18%  Similarity=0.327  Sum_probs=43.9

Q ss_pred             cEEEEEEEeeCCC---CceeEEEEcCCcccccc--------------CCceEEe---CCceeEEEEecCCCCcCeEEEEE
Q psy11549         76 SVDIHCAVEADPP---ARSFKWKFNNSGETLDV--------------GSERFSS---GSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        76 ~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~--------------~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      .++|+|.....++   ...+.|.+...+.....              ...+...   ...+++|.|.++..+|.|.|+|.
T Consensus         2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~   81 (99)
T cd05886           2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE   81 (99)
T ss_pred             cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence            5789998875332   22588987432111100              0011121   12356899999999999999999


Q ss_pred             EEc-CCceEEee
Q psy11549        136 AQN-AIGTQVTP  146 (261)
Q Consensus       136 ~~~-~~~~~~~~  146 (261)
                      +.+ +.|..+..
T Consensus        82 v~t~P~g~~~~~   93 (99)
T cd05886          82 FATFPTGNRESQ   93 (99)
T ss_pred             EEeCCCCCeEEE
Confidence            998 56655543

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.28  E-value=3.3e-06  Score=51.95  Aligned_cols=54  Identities=22%  Similarity=0.394  Sum_probs=36.9

Q ss_pred             CCCCeeccCCCCceEE---EECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARII---LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||.++..+......   .....|.|.+++.+|+|.|+|.+.|..|.. +.++.|.|
T Consensus        29 ~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~l~v   85 (85)
T cd05729          29 LKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYKVDV   85 (85)
T ss_pred             EECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEEEeC
Confidence            4677777532211111   112379999999999999999999998885 55666653

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.27  E-value=3.7e-05  Score=49.77  Aligned_cols=36  Identities=14%  Similarity=0.211  Sum_probs=28.5

Q ss_pred             ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549        115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus       115 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      ...+|.|.++..+|+|.|.|.+............+.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~  112 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLD  112 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEE
Confidence            467899999999999999999998766555543333

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.27  E-value=2.8e-06  Score=53.22  Aligned_cols=44  Identities=32%  Similarity=0.543  Sum_probs=35.0

Q ss_pred             CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        12 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|.....+++|.|.+++.+|+|.|+|.+....+......+.|.|
T Consensus        49 ~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v   92 (92)
T cd05741          49 GRETIYPNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV   92 (92)
T ss_pred             CeEEEcCCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence            44555667899999999999999999998887766566666653

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.27  E-value=5.2e-06  Score=51.19  Aligned_cols=77  Identities=8%  Similarity=0.021  Sum_probs=48.7

Q ss_pred             CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--------EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549        170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--------NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP  241 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~  241 (261)
                      |+.+.|.|.+..+......+.|.+..........        .........|.|.++++.|.|.|  .|.|.|..|....
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y--~C~a~n~~~~~~~   78 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRY--TCTASSGQMIAKN   78 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEE--EEEEeecceEecc
Confidence            5788999997222222344556443321110000        00011246899999999999999  9999999998888


Q ss_pred             eeeeeee
Q psy11549        242 VIWDDFS  248 (261)
Q Consensus       242 s~~~~~~  248 (261)
                      +.-+.|+
T Consensus        79 ~t~~~V~   85 (86)
T cd05862          79 STIVIVH   85 (86)
T ss_pred             cEEEEEe
Confidence            8777664

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.26  E-value=5e-06  Score=50.49  Aligned_cols=69  Identities=22%  Similarity=0.292  Sum_probs=44.7

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      .|.++.+  ..|+.+.|.|.+   .|.|.+ -+.|+++.......   .......|.|.+  +.+.|.|  .|.|.|.+|
T Consensus         4 ~P~~~~v--~~G~~v~l~C~a---~G~P~P~~I~W~k~g~~l~~~---~~~~~s~L~i~~--~~d~g~Y--~C~A~N~~G   71 (81)
T cd05749           4 EPEDLSV--TANTPFNLTCQA---VGPPEPVEILWWQGGSPLGDP---PAPSPSVLNVPG--LNETSKF--SCEAHNAKG   71 (81)
T ss_pred             CCCceEE--cCCCCEEEEEEe---eeecCCeEEEEEECCEECCCC---CCCCCCEEEEcc--ccCCeEE--EEEEEeccC
Confidence            3455444  459999999997   555544 24444443221110   122346899988  7888989  999999999


Q ss_pred             cC
Q psy11549        238 RS  239 (261)
Q Consensus       238 ~~  239 (261)
                      ..
T Consensus        72 ~~   73 (81)
T cd05749          72 VT   73 (81)
T ss_pred             cE
Confidence            54

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.26  E-value=1.8e-05  Score=50.53  Aligned_cols=70  Identities=14%  Similarity=0.054  Sum_probs=45.2

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCcc-c-----ccc----------CCceEEeCCceeEEEEecCCCCcCeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGE-T-----LDV----------GSERFSSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~-~-----~~~----------~~~~~~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      .+.+|+++.|.|...... ...+.|++..... .     ...          ...+..... ..+|.|.++..+|+|.|+
T Consensus         9 ~~~~G~~V~L~v~~~p~~-~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~-ngSL~I~~v~~~D~G~Y~   86 (105)
T cd05774           9 QVAEGENVLLLVHNLPEN-LLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP-NGSLLIQNVTQKDTGFYT   86 (105)
T ss_pred             cccCCCCEEEEecCCCCC-ceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC-CCcEEEecCCcccCEEEE
Confidence            456899999999754332 2379999853211 0     000          011112211 237999999999999999


Q ss_pred             EEEEcCCc
Q psy11549        134 CAAQNAIG  141 (261)
Q Consensus       134 C~~~~~~~  141 (261)
                      |.+.+...
T Consensus        87 ~~v~~~~~   94 (105)
T cd05774          87 LQTITTNF   94 (105)
T ss_pred             EEEEeCCc
Confidence            99998763

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.25  E-value=5.5e-06  Score=51.71  Aligned_cols=74  Identities=8%  Similarity=-0.070  Sum_probs=49.5

Q ss_pred             cCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC-CCcCCceeeeee
Q psy11549        169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA-KGRSLPVIWDDF  247 (261)
Q Consensus       169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~-~G~~~~s~~~~~  247 (261)
                      .|+.++|.|..   ......| .+++++................|.|.+++.+++|.|  +|.+.|. .+++..|.++++
T Consensus        15 ~G~~VtL~C~~---~~~~~~f-~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y--~C~~~~~~~~~S~~Sd~lel   88 (91)
T cd05751          15 LGKPVTLRCQG---PYGAVEY-RLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRY--RCYYRSGVALWSEPSDPLEL   88 (91)
T ss_pred             CCCcEEEEEec---CCCCCEE-EEEECCCCccccccCCCceeEEEEccCCChhHCEEE--EEEEECCCCccCCCCCcEEE
Confidence            59999999996   2223444 444444332211111223346799999999999999  8888887 678899998876


Q ss_pred             e
Q psy11549        248 S  248 (261)
Q Consensus       248 ~  248 (261)
                      .
T Consensus        89 ~   89 (91)
T cd05751          89 V   89 (91)
T ss_pred             E
Confidence            5

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.24  E-value=1.6e-05  Score=52.15  Aligned_cols=71  Identities=17%  Similarity=0.236  Sum_probs=49.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEEe----CCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSS----GSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+..|++++|.|..........+.|++...+....           ....++..    ......|.|.++..+|+|.|.
T Consensus         9 v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~   88 (116)
T cd07706           9 VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYF   88 (116)
T ss_pred             eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEE
Confidence            668899999999998764333379999753322110           11233432    234668999999999999999


Q ss_pred             EEEEcC
Q psy11549        134 CAAQNA  139 (261)
Q Consensus       134 C~~~~~  139 (261)
                      |.+...
T Consensus        89 C~~~~~   94 (116)
T cd07706          89 CALSTL   94 (116)
T ss_pred             EEEECC
Confidence            999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.23  E-value=7.6e-06  Score=52.04  Aligned_cols=36  Identities=31%  Similarity=0.592  Sum_probs=29.7

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeC-CCcceeeeEEEEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRV   55 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V   55 (261)
                      +.+|+|.+++.+|+|.|.|.+.+. .|.. +..+.|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~-~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNF-EAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCe-eeEEEEEe
Confidence            568999999999999999999884 4544 66777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.22  E-value=2.7e-05  Score=50.73  Aligned_cols=70  Identities=24%  Similarity=0.381  Sum_probs=47.5

Q ss_pred             EEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCccccc--c---CC-----------ceE--E--eCCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETLD--V---GS-----------ERF--S--SGSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~--~---~~-----------~~~--~--~~~~~~~l~i~~~~~~  127 (261)
                      +.+..|+++.|.|... ..... .+.|++...+....  .   ..           .++  .  .......|.|.++..+
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~   89 (114)
T PF07686_consen   11 VTVQEGESVTLPCSYSSSSNQS-SVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS   89 (114)
T ss_dssp             EEEETTSEEEEEEEEESSSSGS-EEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred             EEEecCCCEEEEEEEeCCCCcc-eEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence            6788999999999999 22333 79999844311100  0   00           011  1  1233568999999999


Q ss_pred             cCeEEEEEEEcC
Q psy11549        128 DYGTLSCAAQNA  139 (261)
Q Consensus       128 d~g~y~C~~~~~  139 (261)
                      |+|.|.|.+...
T Consensus        90 DsG~Y~C~v~~~  101 (114)
T PF07686_consen   90 DSGTYFCQVSTS  101 (114)
T ss_dssp             GEEEEEEEEEES
T ss_pred             cCEEEEEEEEEC
Confidence            999999999876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.22  E-value=1e-05  Score=52.17  Aligned_cols=69  Identities=22%  Similarity=0.318  Sum_probs=46.1

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCcc---ccc----------------cCCceEE----eCCceeEEEEecCCC
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGE---TLD----------------VGSERFS----SGSRGSMLRYTPVTE  126 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~---~~~----------------~~~~~~~----~~~~~~~l~i~~~~~  126 (261)
                      .+..|++++|.|.+........+.|++...+.   .+.                ....++.    .......|.|.++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999998764433379999764431   100                0012332    123345799999999


Q ss_pred             CcCeEEEEEEEc
Q psy11549        127 LDYGTLSCAAQN  138 (261)
Q Consensus       127 ~d~g~y~C~~~~  138 (261)
                      +|+|.|.|....
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999999863

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.21  E-value=2.1e-05  Score=49.99  Aligned_cols=70  Identities=17%  Similarity=0.324  Sum_probs=43.7

Q ss_pred             cEEEEEEEeeCC--CCceeEEEEcCCcc-c--cc---c-----------CCceEEe--CCceeEEEEecCCCCcCeEEEE
Q psy11549         76 SVDIHCAVEADP--PARSFKWKFNNSGE-T--LD---V-----------GSERFSS--GSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        76 ~~~l~C~~~~~~--~~~~~~W~~~~~~~-~--~~---~-----------~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +++|+|......  ....+.|++...+. .  +.   .           ...++..  ......|.|.++..+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            688999887544  12379998743221 0  00   0           0111221  2235689999999999999999


Q ss_pred             EEEc-CCceEEe
Q psy11549        135 AAQN-AIGTQVT  145 (261)
Q Consensus       135 ~~~~-~~~~~~~  145 (261)
                      .+.+ +.|..+.
T Consensus        82 ~v~~~p~g~~~~   93 (100)
T cd05888          82 RVITFPAGNFEA   93 (100)
T ss_pred             EEEeCCCCCeee
Confidence            9987 5555433

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.20  E-value=9.4e-06  Score=51.50  Aligned_cols=72  Identities=17%  Similarity=0.105  Sum_probs=48.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc----------ccCCceEEe----CCceeEEEEecCCCCcCeEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL----------DVGSERFSS----GSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~----------~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +.+..|++++|.|..........+.|++...+...          .....++..    ......|.|.++..+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            45679999999999875433337999976432110          011122322    2345689999999999999999


Q ss_pred             EEEcCC
Q psy11549        135 AAQNAI  140 (261)
Q Consensus       135 ~~~~~~  140 (261)
                      .+....
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            988754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.20  E-value=3.4e-06  Score=48.35  Aligned_cols=42  Identities=36%  Similarity=0.641  Sum_probs=31.4

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCC
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKG   44 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~   44 (261)
                      +|||..+.  ........+..|.|.+++.+|+|.|+|.+.|..|
T Consensus        22 ~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       22 LKDGKPLP--ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             EECCEECC--CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            35666665  2333444567999999999999999999988654

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.20  E-value=1.4e-05  Score=48.15  Aligned_cols=63  Identities=21%  Similarity=0.216  Sum_probs=42.7

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceE-E---eCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERF-S---SGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +.|.|.+.+..|+..|.|++++....  ...... .   .....+.|.+..-..+|...|+|+|.|+.-
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~--~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l   68 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELT--GKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAV   68 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECc--CcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCccc
Confidence            68999999887766999999874321  111100 1   112355788877777888899999998653

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.20  E-value=1.7e-05  Score=49.48  Aligned_cols=67  Identities=6%  Similarity=-0.021  Sum_probs=45.8

Q ss_pred             ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcc--c-eeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQT-FTLELYSASDL--N-LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~--~-~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      ..|..+.|.|.+  +.+.|.. |.|. ++....  . ..-......++.|.+.++...|.|+|  .|.|.|.+...
T Consensus        16 ~eG~~~~L~C~p--P~g~P~p~~~W~-k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y--~C~A~n~~~~~   86 (96)
T cd05727          16 KEGWGVVLFCDP--PPHYPDLSYRWL-LNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNY--SCFVSSPSSTK   86 (96)
T ss_pred             eeCCcEEEeeCC--CCCCCCCEEEEE-ECCcccccccCCCeEEeCCCCcEEEeecCHhhCcee--EEEEEecccCC
Confidence            459999999997  5666654 5554 442221  1 01122233468999999999999999  99999998643

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.18  E-value=1.3e-05  Score=48.36  Aligned_cols=62  Identities=11%  Similarity=0.061  Sum_probs=40.8

Q ss_pred             CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        160 PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       160 p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      |....+.  .|+.++|.|.+  .+......+.|+++....       ......|.|.++ .+++|.|  +|.|.|.
T Consensus         7 P~~~~v~--~G~~V~L~C~~--~~~p~~~~~~W~kng~~l-------~~~~~~l~i~~~-~~dsG~Y--~C~a~~~   68 (78)
T cd05752           7 PPWTTIF--QGEKVTLTCNG--FNSPEQNSTQWYHNGKLL-------ETTTNSYRIRAA-NNDSGEY--RCQTQGS   68 (78)
T ss_pred             CCCeEee--CCCCEEEEEeC--CCCCCCccEEEEECCEEe-------eccCCeEEEeec-ccCCEEe--EEECCCC
Confidence            3334443  49999999997  332223334555554221       123478999999 9999999  9999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.17  E-value=6.5e-06  Score=51.65  Aligned_cols=34  Identities=18%  Similarity=0.350  Sum_probs=25.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .+|.|.+++.+|+|.|+|.+......  +..+.|+|
T Consensus        62 ~~L~I~nV~~~D~G~YtC~~~t~~~~--~~~~~~~v   95 (95)
T cd05882          62 LIISISNVQLSDEGEYTCSIFTMPVR--TAKATVTV   95 (95)
T ss_pred             EEEEECCCCcccCEEEEEEEEeeccc--cEEEEEEC
Confidence            48999999999999999999874322  34445543

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.15  E-value=5.6e-06  Score=53.94  Aligned_cols=37  Identities=24%  Similarity=0.454  Sum_probs=28.6

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEE
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLR   54 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~   54 (261)
                      .+.+|.|.+++.+|.|.|+|.+.|..+.. ....+.|.
T Consensus        78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~  115 (116)
T cd05879          78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLY  115 (116)
T ss_pred             CeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence            45699999999999999999999887643 23345554

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.14  E-value=4.2e-05  Score=48.11  Aligned_cols=78  Identities=8%  Similarity=-0.022  Sum_probs=48.3

Q ss_pred             eEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCc---cceeEEEe-----cCCCCcEEEcCCCCCC-ccEEEEEEEEE
Q psy11549        164 SVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASD---LNLLVNLT-----NLDTPAFTLEDLGLDG-TVLMRVVISGV  233 (261)
Q Consensus       164 ~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~i~~~~l~~-~~~Y~~~~~a~  233 (261)
                      ......|+.+.|.|.+  ...+++ ...|.|+...-   ....+.+.     ....+.|+|.++...+ .|.|  .|.|.
T Consensus        10 s~~~~~G~~~~L~C~~--~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y--~C~a~   85 (98)
T cd05898          10 VQYAVRGERGKVKCFI--GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY--NCTAW   85 (98)
T ss_pred             eEEEeCCCcEEEEEEE--ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE--EEEEE
Confidence            3444679999999997  333333 34555543211   11123111     1345789999965556 5799  99999


Q ss_pred             cCCCcCCceeee
Q psy11549        234 NAKGRSLPVIWD  245 (261)
Q Consensus       234 N~~G~~~~s~~~  245 (261)
                      |.+|.......+
T Consensus        86 N~~G~d~~~i~L   97 (98)
T cd05898          86 NSFGSGTAIIQL   97 (98)
T ss_pred             eCCccceEEEEe
Confidence            999987655443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PHA03376 BARF1; Provisional

Probab=98.10  E-value=3.2e-05  Score=53.44  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=46.7

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      +|.|.+++.+|.|.|+|......... ...-.|.+..+-...... ........+.-.+.|...+.|.| .++|.-+..
T Consensus        88 sLvI~~l~lSDdGtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a-~~~dFp~~~~~~i~C~sggfP~P-~~~Wle~~~  163 (221)
T PHA03376         88 FLVVTAANISHDGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHS-ERSQFPDFSVLTVTCTVNAFPHP-HVQWLMPEG  163 (221)
T ss_pred             EEEEEeeeecCCceEEEEEEcCCCce-eeeeeeeeeecceEEEEe-ccccCCCCCeeEEEEecCCcCCc-hheeccccC
Confidence            89999999999999999997765332 222334332211111000 00011234556889997788888 899987653

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.09  E-value=9.6e-06  Score=51.26  Aligned_cols=36  Identities=19%  Similarity=0.438  Sum_probs=31.8

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .+|+|.+++.+|+|.|.|.+.+..+......+.|.|
T Consensus        61 ~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          61 YSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             eeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            699999999999999999999888877677777776

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.08  E-value=0.00011  Score=44.44  Aligned_cols=63  Identities=11%  Similarity=0.122  Sum_probs=45.0

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .+..|++++|.|.....+. ...++|...++. ..      .........|.+..+...|+|.++|.+...
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~-~~------~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNK-SK------QILNQDKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCc-cc------eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence            4568999999999966433 237999865532 11      111223447999999999999999999764

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.07  E-value=1.3e-05  Score=51.80  Aligned_cols=38  Identities=24%  Similarity=0.532  Sum_probs=31.8

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      .+.+|.|.+++.+|+|.|.|.+....... ...+.|.|.
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence            35699999999999999999998887665 667777775

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.07  E-value=7.7e-05  Score=49.13  Aligned_cols=71  Identities=15%  Similarity=0.116  Sum_probs=47.9

Q ss_pred             EEeeCCCcEEEEEEEeeCC-----CCceeEEEEcCCcc---ccc-----------cCCceEEe----CCceeEEEEecCC
Q psy11549         69 VGASRSESVDIHCAVEADP-----PARSFKWKFNNSGE---TLD-----------VGSERFSS----GSRGSMLRYTPVT  125 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-----~~~~~~W~~~~~~~---~~~-----------~~~~~~~~----~~~~~~l~i~~~~  125 (261)
                      +.+..|+.++|+|......     ....+.|++...+.   .+.           ....++..    ......|.|.++.
T Consensus         9 v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l~   88 (119)
T cd05712           9 VSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDAQ   88 (119)
T ss_pred             EEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccCC
Confidence            6788999999999876432     12369999764332   100           00123332    3445689999999


Q ss_pred             CCcCeEEEEEEEcC
Q psy11549        126 ELDYGTLSCAAQNA  139 (261)
Q Consensus       126 ~~d~g~y~C~~~~~  139 (261)
                      .+|+|.|.|.+...
T Consensus        89 ~~Dsg~Y~C~~~~~  102 (119)
T cd05712          89 PEDSGKYFFRVELG  102 (119)
T ss_pred             hhhCeEEEEEEEcC
Confidence            99999999998764

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.07  E-value=1.9e-05  Score=50.07  Aligned_cols=36  Identities=17%  Similarity=0.411  Sum_probs=28.8

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeC-CCcceeeeEEEEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRV   55 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V   55 (261)
                      +.+|+|.+++.+|+|.|.|.+... .|.. ...+.|.|
T Consensus        61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~-~~~~~l~V   97 (98)
T cd05718          61 DATISISNLRLEDEGNYICEFATFPQGNR-QKVTTLTV   97 (98)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCCcE-EEEEEEEe
Confidence            469999999999999999998764 4544 56667766

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.06  E-value=2.9e-05  Score=48.82  Aligned_cols=68  Identities=13%  Similarity=0.177  Sum_probs=44.9

Q ss_pred             eeCCCcEEEEEEEeeCCCCce--eEEEEcCCccccccCCceEE-----eCCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         71 ASRSESVDIHCAVEADPPARS--FKWKFNNSGETLDVGSERFS-----SGSRGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~~~--~~W~~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      +.+|+.++|.|.+.+..+...  +.||+++...    ....+.     .......+.+.....+|...|+|+|.+....
T Consensus        13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l----~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETL----SRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP   87 (100)
T ss_pred             ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEc----ccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence            569999999999998766545  7999977421    111111     1223446676655555566999999986544

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.06  E-value=1.6e-05  Score=49.84  Aligned_cols=38  Identities=21%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .+.+|.|.+++.+|+|.|+|.+.+........+.+|.|
T Consensus        58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            36799999999999999999987664333367777776

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.06  E-value=1.6e-05  Score=50.05  Aligned_cols=69  Identities=20%  Similarity=0.229  Sum_probs=43.4

Q ss_pred             CCCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEEe--CCc---eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         73 RSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFSS--GSR---GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        73 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .|+.+.|.|.+.+. |....+.|++++..............  .+.   .+.|.+......+.+.|+|.|.+...
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            68899999999998 44558999998743221110011111  111   22455555555689999999998654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PHA02633 hypothetical protein; Provisional

Probab=98.05  E-value=2.1e-05  Score=43.62  Aligned_cols=40  Identities=13%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA   58 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~   58 (261)
                      .+..|+|.++..+|+|.|.|+.+|..-.. ..++.|.|...
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~~~   55 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCICLR   55 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEeec
Confidence            45689999999999999999998775444 45677777543

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.04  E-value=8.4e-05  Score=51.57  Aligned_cols=70  Identities=19%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             EEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCccccc-cC--------CceEE---eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETLD-VG--------SERFS---SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~-~~--------~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|... +...+ .+.|.+..+....- ..        ..++.   .....+.|.|.++..+|+|.|+|.
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~-qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSI-LITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccc-eEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            6788999999999985 43344 79998864311110 00        01222   123456899999999999999999


Q ss_pred             EEcC
Q psy11549        136 AQNA  139 (261)
Q Consensus       136 ~~~~  139 (261)
                      +..-
T Consensus       104 F~tf  107 (189)
T PHA02987        104 FNTL  107 (189)
T ss_pred             EEec
Confidence            8653

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.03  E-value=1.6e-05  Score=48.43  Aligned_cols=40  Identities=23%  Similarity=0.448  Sum_probs=30.4

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeC
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      ++||.+|..+ . +....+..|.|.+++.+|+|.|.|.+.-.
T Consensus        30 ~~ng~~l~~~-~-r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~   69 (85)
T cd05872          30 LFNGTPLNAQ-F-SYRVGTDGLLILVTSPEHSGTYRCYSEEE   69 (85)
T ss_pred             EECCcccCCC-c-ceEEeCCCCEEEECCHhhCEEEEEEEecC
Confidence            3688888654 3 44445556889999999999999998643

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.02  E-value=1.3e-05  Score=48.20  Aligned_cols=46  Identities=9%  Similarity=0.099  Sum_probs=34.2

Q ss_pred             CCCCeeccCCCC----ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc
Q psy11549          1 MAGGIPLAHNTS----ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA   46 (261)
Q Consensus         1 ~~ng~~l~~~~~----~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~   46 (261)
                      ||||++|.+...    .......++|.|.....+|.+.|+|.|.|..+..
T Consensus        20 ~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885          20 YRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            689999975321    1111223479999999999999999999998764

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin

Probab=98.02  E-value=0.00026  Score=43.71  Aligned_cols=83  Identities=25%  Similarity=0.280  Sum_probs=58.4

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCCC-CCCeEEEEEEEeCCccceeE-EEec--CCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYDG-GLPQTFTLELYSASDLNLLV-NLTN--LDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~~-~~p~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      .+|.++.+.......+.|.|.++... +....|.+.+......  .+ ....  .....+.|.+  |.+++.|.|++.|.
T Consensus         2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~--~~~~~~~~~~~~~~~~i~~--l~p~~~Y~~~v~a~   77 (93)
T cd00063           2 SPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSG--DWKEVEVTPGSETSYTLTG--LKPGTEYEFRVRAV   77 (93)
T ss_pred             cCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCC--CCEEeeccCCcccEEEEcc--ccCCCEEEEEEEEE
Confidence            35555666666679999999974332 2345588887765422  22 2222  2567889999  99999999999999


Q ss_pred             cCCCcCCceee
Q psy11549        234 NAKGRSLPVIW  244 (261)
Q Consensus       234 N~~G~~~~s~~  244 (261)
                      +..|.+.++..
T Consensus        78 ~~~~~~~~s~~   88 (93)
T cd00063          78 NGGGESPPSES   88 (93)
T ss_pred             CCCccCCCccc
Confidence            99888877663

Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.02  E-value=1.2e-05  Score=51.75  Aligned_cols=37  Identities=24%  Similarity=0.605  Sum_probs=31.4

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +.+|+|.+++.+|+|.|.|.+.+..+.. +..+.|.|.
T Consensus        67 ~~sL~I~~v~~sD~G~Y~C~v~~~~~~~-~~~v~L~V~  103 (106)
T cd05714          67 DASLVITDLRLEDSGRYRCEVIDGIEDE-QDTVELEVR  103 (106)
T ss_pred             cceEEECCCCHHHCEEEEEEEEcCCCce-EEEEEEEEE
Confidence            4699999999999999999999876654 677788775

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.02  E-value=3.7e-05  Score=47.90  Aligned_cols=69  Identities=10%  Similarity=-0.005  Sum_probs=45.6

Q ss_pred             EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCc-cceeEEEecCCCCcEEEcCCCCCCcc-EEEEEEEEEcCCCc
Q psy11549        166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASD-LNLLVNLTNLDTPAFTLEDLGLDGTV-LMRVVISGVNAKGR  238 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~-~Y~~~~~a~N~~G~  238 (261)
                      ....|..+.|.|.+  +.+.|..-+.|+..... ....-.+....++.|.|.++...|.| .|  .|.|.|.+..
T Consensus        14 ~V~eG~~~~L~C~p--P~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y--~C~a~~~~~~   84 (95)
T cd05845          14 EVEEGDSVVLPCNP--PKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDY--ICHAHFPGLR   84 (95)
T ss_pred             EEecCCCEEEEecC--CCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCe--EEEEEccccc
Confidence            33559999999986  46666443344433211 11111333345689999999999999 79  9999999753

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.01  E-value=5.4e-05  Score=48.53  Aligned_cols=67  Identities=24%  Similarity=0.452  Sum_probs=45.5

Q ss_pred             eeCCCcEEEEEEEeeCCCCceeEEEEcCCc--ccc----ccC-------------CceEE--eCCceeEEEEecCCCCcC
Q psy11549         71 ASRSESVDIHCAVEADPPARSFKWKFNNSG--ETL----DVG-------------SERFS--SGSRGSMLRYTPVTELDY  129 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~--~~~----~~~-------------~~~~~--~~~~~~~l~i~~~~~~d~  129 (261)
                      +..|++++|.|.+...... .+.|++...+  ...    ...             ..++.  .......|.|.++..+|+
T Consensus         3 v~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           3 AELGQKVELKCEVLNSSPT-GCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             ccCCCeEEEEEEecCCCCC-cEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            5689999999988655333 6999986543  111    000             11232  233556799999999999


Q ss_pred             eEEEEEEEc
Q psy11549        130 GTLSCAAQN  138 (261)
Q Consensus       130 g~y~C~~~~  138 (261)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999999764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>smart00409 IG Immunoglobulin

Probab=98.00  E-value=3.2e-05  Score=47.24  Aligned_cols=50  Identities=30%  Similarity=0.511  Sum_probs=34.9

Q ss_pred             CeeccCCCCceEEEEC---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          4 GIPLAHNTSARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         4 g~~l~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +.++...+. ......   .+|.|.+++.+|+|.|+|.+.+..+... ..+.|.|
T Consensus        33 ~~~v~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~-~~~~l~V   85 (86)
T smart00409       33 GKLLAESGR-FSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS-STTTLTV   85 (86)
T ss_pred             CEEcCCCCc-EEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE-EEEEEEE
Confidence            566643322 333333   5899999999999999999998777663 3366655

>smart00410 IG_like Immunoglobulin like

Probab=98.00  E-value=3.2e-05  Score=47.24  Aligned_cols=50  Identities=30%  Similarity=0.511  Sum_probs=34.9

Q ss_pred             CeeccCCCCceEEEEC---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          4 GIPLAHNTSARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         4 g~~l~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +.++...+. ......   .+|.|.+++.+|+|.|+|.+.+..+... ..+.|.|
T Consensus        33 ~~~v~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~-~~~~l~V   85 (86)
T smart00410       33 GKLLAESGR-FSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSAS-STTTLTV   85 (86)
T ss_pred             CEEcCCCCc-EEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEE-EEEEEEE
Confidence            566643322 333333   5899999999999999999998777663 3366655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.99  E-value=1.8e-05  Score=51.23  Aligned_cols=38  Identities=21%  Similarity=0.546  Sum_probs=29.9

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      .+.+|+|.+++.+|+|.|+|.+....... +..+.|.|.
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~  109 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIEDN-YDTVEVQVK  109 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence            35699999999999999999998665444 555666664

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.99  E-value=6.4e-05  Score=48.55  Aligned_cols=67  Identities=21%  Similarity=0.339  Sum_probs=40.3

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCCc------eeEEEEecCCCCcCe-EEEEEEEcCC
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSR------GSMLRYTPVTELDYG-TLSCAAQNAI  140 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g-~y~C~~~~~~  140 (261)
                      ...|+.++|.|.+.+..+ ..++.|++++....  ..........+      .+.|.+.. ...|.+ .|+|.+....
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~--~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELS--AEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECc--ccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            447888999999998766 46899999885322  11111111111      22344443 334434 5999999864

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.98  E-value=0.00013  Score=44.61  Aligned_cols=63  Identities=16%  Similarity=0.356  Sum_probs=39.6

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCc------eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR------GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +.|.|.+.+..|+..|.|++++..  +............      .+.|.+.....++...|+|.+.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~--l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQE--LEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEE--CCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            689999998855459999998742  2111111111111      23455555566677899999998754

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=97.97  E-value=1.6e-05  Score=50.62  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=29.0

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .+|+|.+++.+|+|.|+|.+.+..+.. ...+.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~i~l~v   99 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFYE-EATVELKV   99 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcEE-EEEEEEEE
Confidence            489999999999999999999876653 56666665

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.95  E-value=9.5e-06  Score=49.18  Aligned_cols=35  Identities=34%  Similarity=0.620  Sum_probs=29.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .|.|.+++.+|+|.|+|.+.+..+...+..+.|+|
T Consensus        46 ~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   46 GLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            48889999999999999999977665567777765

...

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.95  E-value=0.00011  Score=45.97  Aligned_cols=71  Identities=18%  Similarity=0.273  Sum_probs=43.6

Q ss_pred             CcEEEEEEEeeCCCCceeEEEEcCCcc--cccc----CC--------ceEEeC---CceeEEEEecCCCCcCeEEEEEEE
Q psy11549         75 ESVDIHCAVEADPPARSFKWKFNNSGE--TLDV----GS--------ERFSSG---SRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        75 ~~~~l~C~~~~~~~~~~~~W~~~~~~~--~~~~----~~--------~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      ++++|.|..........+.|.+...+.  .+-.    .+        .+....   ....+|.|.+++.+|.|.|+|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            367899988654444478898753211  1100    00        122221   235689999999999999999986


Q ss_pred             c-CCceEEe
Q psy11549        138 N-AIGTQVT  145 (261)
Q Consensus       138 ~-~~~~~~~  145 (261)
                      . +.|....
T Consensus        81 t~P~g~~~~   89 (96)
T cd05889          81 TYPQGSWEK   89 (96)
T ss_pred             eCCCCCeEE
Confidence            5 4555444

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.94  E-value=5.5e-05  Score=47.41  Aligned_cols=27  Identities=22%  Similarity=0.461  Sum_probs=23.4

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCC
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKG   44 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~   44 (261)
                      .+.+|.|.+++.+|+|.|+|.......
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~   84 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQ   84 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCC
Confidence            357999999999999999999977643

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.93  E-value=0.0002  Score=45.01  Aligned_cols=67  Identities=12%  Similarity=0.069  Sum_probs=42.1

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCC-------c---cceeEEEe--cCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSAS-------D---LNLLVNLT--NLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~-------~---~~~~~~~~--~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      +....|+.+.|.|..   .+.|..++.|++...       .   ...++...  ......|.|.+++.+|.|.|  .|.+
T Consensus         7 v~v~eG~~v~L~C~~---~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y--~C~~   81 (95)
T cd07701           7 VTVVEGGTANLTCRV---DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQY--TCSL   81 (95)
T ss_pred             EEEecCCcEEEEEEE---ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEE--EEEe
Confidence            444569999999997   344555555653211       0   01122221  12346789999999999999  8888


Q ss_pred             EcCC
Q psy11549        233 VNAK  236 (261)
Q Consensus       233 ~N~~  236 (261)
                      .+..
T Consensus        82 ~t~~   85 (95)
T cd07701          82 FTMP   85 (95)
T ss_pred             Eeec
Confidence            7743

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.93  E-value=2.5e-05  Score=50.55  Aligned_cols=38  Identities=18%  Similarity=0.475  Sum_probs=30.5

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY   57 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~   57 (261)
                      +.+|+|.+++.+|+|.|.|.+....... ...+.|.|..
T Consensus        71 ~asL~I~~l~~sD~G~Y~C~v~~~~~~~-~~~v~l~V~g  108 (110)
T cd05878          71 DASLEISRLRSSDSGVYRCEVMHGIEDE-QDTVPLEVTG  108 (110)
T ss_pred             cEEEEECCCChhhCEEEEEEEEeCCCcc-eEEEEEEEEE
Confidence            3589999999999999999998765444 5667777753

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=97.92  E-value=2.4e-05  Score=50.38  Aligned_cols=36  Identities=28%  Similarity=0.545  Sum_probs=30.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|.
T Consensus        68 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~-~~~~~l~v~  103 (106)
T cd05877          68 ASLVITDLRLEDYGRYRCEVIDGLEDE-SVVVALRLR  103 (106)
T ss_pred             EEEEEccCChHHCEEEEEEEEecccce-EEEEEEEEE
Confidence            489999999999999999998877765 667777775

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.86  E-value=2.4e-05  Score=50.38  Aligned_cols=37  Identities=30%  Similarity=0.582  Sum_probs=29.9

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +.+|.|.+++.+|+|.|.|.+....... ...+.|.|.
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~-~~~v~L~V~  107 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGINDE-QDTVPLEVT  107 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCccc-EEEEEEEEE
Confidence            4599999999999999999998865433 566777775

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=97.86  E-value=0.00018  Score=43.86  Aligned_cols=64  Identities=19%  Similarity=0.297  Sum_probs=38.4

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe-CC----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS-GS----RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      +.|.|.+.+..|+.++.|++++..  +......... .+    ..+.|.+.....++.+.|+|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~--l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKE--LKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEE--ccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            589999988744449999998743  2111111111 11    1234555555556677999999987543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.81  E-value=0.00012  Score=44.68  Aligned_cols=63  Identities=14%  Similarity=0.213  Sum_probs=40.1

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCce-EEe-C----CceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSER-FSS-G----SRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~-~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ++|.|.+.+..|+..+.|++++..  +...... ... .    ...+.|.+.....++...|+|.+.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~--l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKE--IKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEE--CcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            689999998776679999998753  2111100 001 1    1233566665556677799999998643

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd00096 Ig Immunoglobulin domain

Probab=97.75  E-value=0.00014  Score=42.42  Aligned_cols=63  Identities=29%  Similarity=0.416  Sum_probs=41.8

Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccC---CceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVG---SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +.|.|.+.+.+.. .+.|++.+........   ............|.+.++...|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPP-TITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCC-cEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            4688999884444 8999987643221110   0011123345579999999999999999998765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=97.74  E-value=7.8e-05  Score=47.14  Aligned_cols=38  Identities=24%  Similarity=0.372  Sum_probs=29.6

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .+.+|.|.+++.+|+|.|+|..........+..+.|+|
T Consensus        59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            34689999999999999999986554333366777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.73  E-value=0.01  Score=47.47  Aligned_cols=77  Identities=18%  Similarity=0.208  Sum_probs=53.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC-c-ceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC--CceeEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG-E-ATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP--ARSFKWKF   96 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~-~-~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~   96 (261)
                      .|.|.+++..+.|.|+=+..+... . .....++|.+..+|.+....   -.+..|++-.-.|.+....+  ...+.|+.
T Consensus       290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p---~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~  366 (566)
T PHA03269        290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG---DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS  366 (566)
T ss_pred             ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            699999999999999855543332 2 22345555555666444322   33669999999999987655  34699999


Q ss_pred             cCCc
Q psy11549         97 NNSG  100 (261)
Q Consensus        97 ~~~~  100 (261)
                      ++..
T Consensus       367 ng~~  370 (566)
T PHA03269        367 NFGN  370 (566)
T ss_pred             CCcc
Confidence            8643

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.73  E-value=0.00014  Score=41.96  Aligned_cols=60  Identities=17%  Similarity=0.121  Sum_probs=35.0

Q ss_pred             CCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEE-ecCCCC---cEEEcCCCCCCccEEEEEEEE
Q psy11549        170 TSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNL-TNLDTP---AFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      |+.++|.|.+ .....+..+.|++............ ......   .|.|.+++.+|+|.|  .|.|
T Consensus         1 G~~v~L~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y--~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSV-SSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTY--TCVV   64 (64)
T ss_dssp             TSEEEEEEEE-EESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEE--EEEE
T ss_pred             CCeEEEEeec-CCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEE--EEEC
Confidence            6789999997 2233334455554433333222222 222211   299999999999999  6654

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=97.70  E-value=8.9e-05  Score=45.23  Aligned_cols=54  Identities=19%  Similarity=0.302  Sum_probs=33.7

Q ss_pred             CCCCeeccCCCCceEEEEC-------CeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSN-------QSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLR   54 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~-------~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~   54 (261)
                      ||||++|...........+       +.|.|.....+|.|.|+|.|.|..... ...++.|.
T Consensus        20 ~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~   81 (82)
T cd05759          20 FRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD   81 (82)
T ss_pred             EECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence            5788888532211222222       368888888889999999998876443 23344443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>TIGR00864 PCC polycystin cation channel protein

Probab=97.70  E-value=0.024  Score=55.12  Aligned_cols=201  Identities=12%  Similarity=0.120  Sum_probs=110.9

Q ss_pred             CCCCCCEeEEE--EEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc
Q psy11549         27 VSRQSAGTYKC--SAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD  104 (261)
Q Consensus        27 ~~~~D~G~Y~C--~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~  104 (261)
                      .+..++|.|+-  .|.|..+.. +.+..+.|..+............+..|+.+.|.+.+...+.. .+.|...+......
T Consensus      1834 ~Tf~~aG~ytV~L~AsN~vs~~-~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~V-tf~w~fGdgs~~~~ 1911 (2740)
T TIGR00864      1834 MTFPDAGTFAIRLNASNAVSGK-SASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAV-NFRLQIGGAAPEVL 1911 (2740)
T ss_pred             EecCCCeEEEEEEEEEcccCcc-eeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCce-EEEEEeCCCCceee
Confidence            46789999977  567887665 456677777665433222222456789999999988877754 89998765321111


Q ss_pred             cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCC---CcceEEeecCCeEEEEeecCC
Q psy11549        105 VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP---QNCSVRNETTSSVHISCTPGY  181 (261)
Q Consensus       105 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p---~~~~v~~~~~~~~~l~c~~~~  181 (261)
                      -....         +. ..-..-.....+..+.|..+.....  +.+.|..+...-   ..+......|....+.-..  
T Consensus      1912 t~~~t---------~~-HsY~~~G~Y~VtV~A~N~Vs~~~a~--~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v-- 1977 (2740)
T TIGR00864      1912 QPGPR---------FS-HSFPRVDDHMVNLRAKNEVSCAQAN--LHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANV-- 1977 (2740)
T ss_pred             cCCCe---------EE-eecCCCCcEEEEEEEEeccceeeee--EEEEEEEeccceEecCCcccceecCceEEEEEEE--
Confidence            01111         11 1112223345566677877776553  334443332211   1111001235555555444  


Q ss_pred             CCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        182 DGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       182 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      ..+.|..|.|.+................+-.+.     ....|.|++++.|.|.+|.......+++.
T Consensus      1978 ~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~-----~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ 2039 (2740)
T TIGR00864      1978 QRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYT-----AEAAGLLEIQLGAFNALGAENITLQLEAQ 2039 (2740)
T ss_pred             ecCCceEEEEEeeecccCCCcceeecCCceEEc-----cCCCcEEEEEEEEEcccCcccccEEEEEE
Confidence            577888888876533211101111112222222     45689999999999999987655555554

Note: this model has been restricted to the amino half because for technical reasons.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.68  E-value=0.00014  Score=45.43  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      +|.|.+++.+|+|.|+|.+....
T Consensus        63 tL~I~~vq~~D~G~Y~Cqv~t~p   85 (95)
T cd05881          63 RVSLSNVSLSDEGRYFCQLYTDP   85 (95)
T ss_pred             EEEECcCCcccCEEEEEEEEccc
Confidence            79999999999999999997654

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.67  E-value=0.00056  Score=44.83  Aligned_cols=70  Identities=17%  Similarity=0.276  Sum_probs=45.8

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----c------------CCceEEeC----CceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----V------------GSERFSSG----SRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----~------------~~~~~~~~----~~~~~l~i~~~~~~  127 (261)
                      ..+..|++++|.|...... ....+.||+-..+....    .            ...++...    .....|.|.++..+
T Consensus         7 ~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~   86 (117)
T cd04981           7 GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTPE   86 (117)
T ss_pred             eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCHH
Confidence            5678999999999876443 12269999754322110    0            01223221    22347999999999


Q ss_pred             cCeEEEEEEEc
Q psy11549        128 DYGTLSCAAQN  138 (261)
Q Consensus       128 d~g~y~C~~~~  138 (261)
                      |+|.|.|.+..
T Consensus        87 Dsa~YyCa~~~   97 (117)
T cd04981          87 DTAVYYCARGL   97 (117)
T ss_pred             HCEEEEEEEEc
Confidence            99999999864

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>smart00060 FN3 Fibronectin type 3 domain

Probab=97.62  E-value=0.0017  Score=38.70  Aligned_cols=76  Identities=21%  Similarity=0.273  Sum_probs=45.8

Q ss_pred             CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-eeE-E-EecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        160 PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLV-N-LTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       160 p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-~~~-~-~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      |..+.+.......+.++|.++...+. ..|.+.+....... ..+ . ........+.|.+  |.++..|.|++.|.+..
T Consensus         4 p~~~~~~~~~~~~~~v~W~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~~~~~Y~v~v~a~~~~   80 (83)
T smart00060        4 PSNLRVTDVTSTSVTLSWEPPPDDGI-TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTG--LKPGTEYEFRVRAVNGA   80 (83)
T ss_pred             CCcEEEEEEeCCEEEEEECCCCCCCC-CccEEEEEEEEecCCCccEEEEecCCccEEEEeC--cCCCCEEEEEEEEEccc
Confidence            44455555556689999996433321 33444444322110 012 1 1112247899999  99999999999999986


Q ss_pred             Cc
Q psy11549        237 GR  238 (261)
Q Consensus       237 G~  238 (261)
                      |.
T Consensus        81 g~   82 (83)
T smart00060       81 GE   82 (83)
T ss_pred             CC
Confidence            64

One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=97.62  E-value=8.7e-05  Score=48.49  Aligned_cols=37  Identities=24%  Similarity=0.515  Sum_probs=28.1

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRV   55 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V   55 (261)
                      +.+|.|.+++.+|+|.|+|.+.|..+.. ....+.|.|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  115 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV  115 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            4589999999999999999998876642 134455543

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.61  E-value=0.00072  Score=41.89  Aligned_cols=68  Identities=22%  Similarity=0.332  Sum_probs=41.5

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      |+.+.|.|.+.+..|+..+.|+.++................    ..+.|.+..-..++...++|.|.+..-
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            67999999877665555999998875331000011111111    134577766556677799999998654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.61  E-value=0.00077  Score=42.17  Aligned_cols=67  Identities=16%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             CCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeC-C-ceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         74 SESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSG-S-RGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        74 g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~-~-~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      ++.++|.|.+.+..+ ...+.|.+++..............+ + .........+...+...|+|.+.+..
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            678999999999754 5589999987311111111111211 1 11112222334457789999998754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.61  E-value=0.00067  Score=40.52  Aligned_cols=63  Identities=19%  Similarity=0.208  Sum_probs=36.8

Q ss_pred             EEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeC-Cc----eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         77 VDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSG-SR----GSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        77 ~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ++|.|.+.+..| ...+.|++++..............+ ++    .+.|.+.....++...|+|.+...
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            689999999754 3589999987421110001111111 11    234555554556777999999865

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=97.58  E-value=0.00011  Score=48.07  Aligned_cols=35  Identities=26%  Similarity=0.528  Sum_probs=27.0

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcce-eeeEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLR   54 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-s~~~~l~   54 (261)
                      .+|+|.+++.+|+|.|+|.+.+..+... ...+.|.
T Consensus        80 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  115 (116)
T cd05715          80 ASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR  115 (116)
T ss_pred             eEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence            5899999999999999999988766431 2345554

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>smart00406 IGv Immunoglobulin V-Type

Probab=97.55  E-value=0.0006  Score=41.25  Aligned_cols=61  Identities=21%  Similarity=0.267  Sum_probs=37.7

Q ss_pred             cEEEEEEEeeCCCC-ceeEEEEcCCcccc----c-----------cCCceEEe--C--CceeEEEEecCCCCcCeEEEEE
Q psy11549         76 SVDIHCAVEADPPA-RSFKWKFNNSGETL----D-----------VGSERFSS--G--SRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        76 ~~~l~C~~~~~~~~-~~~~W~~~~~~~~~----~-----------~~~~~~~~--~--~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      ++.|.|.+.....+ ..+.|++...+...    .           ....++..  .  .....|.|.++..+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            36788987765432 36888875431110    0           01122222  1  4456899999999999999996


Q ss_pred             E
Q psy11549        136 A  136 (261)
Q Consensus       136 ~  136 (261)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=97.54  E-value=0.0005  Score=43.09  Aligned_cols=74  Identities=12%  Similarity=0.003  Sum_probs=46.6

Q ss_pred             cCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--E-EecCCCCcEEEcCCCCCCccEEEEEEEE---EcCCCcCCce
Q psy11549        169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--N-LTNLDTPAFTLEDLGLDGTVLMRVVISG---VNAKGRSLPV  242 (261)
Q Consensus       169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~i~~~~l~~~~~Y~~~~~a---~N~~G~~~~s  242 (261)
                      .|+.++|.|...  . ....| .|++.........  . ........|.|..++..++|.|  +|..   .++..++++|
T Consensus        14 ~G~~VTL~C~~~--~-~~~~f-~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y--~C~~~~~~~~~~wS~~S   87 (94)
T cd05711          14 SGENVTLQCHSD--I-RFDRF-ILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTY--RCYGSYNHSLYEWSAPS   87 (94)
T ss_pred             CCCeEEEEEecC--C-CCCEE-EEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEE--EEEEECCCCCccccCCC
Confidence            599999999852  1 11234 4455443332111  0 0112235789999999999999  6654   3456799999


Q ss_pred             eeeeee
Q psy11549        243 IWDDFS  248 (261)
Q Consensus       243 ~~~~~~  248 (261)
                      .++++.
T Consensus        88 dpl~l~   93 (94)
T cd05711          88 DPLKIV   93 (94)
T ss_pred             CCeEEe
Confidence            998864

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.50  E-value=0.0022  Score=40.29  Aligned_cols=66  Identities=6%  Similarity=0.007  Sum_probs=38.7

Q ss_pred             EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCc----------cceeEEEe--cCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASD----------LNLLVNLT--NLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~----------~~~~~~~~--~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      ....|+.++|.|...   +.+..+..|++..+.          ....+...  ......|.|.++++.|.|.|  .|.+.
T Consensus         8 ~v~~G~~v~L~C~~~---~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~~~   82 (95)
T cd05717           8 TVVEGGTATLKCRVK---NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRY--TCSLY   82 (95)
T ss_pred             EEcCCCCEEEEEEEC---CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEE--EEEEe
Confidence            335699999999972   223333334321110          01122111  12235789999999999999  77777


Q ss_pred             cCC
Q psy11549        234 NAK  236 (261)
Q Consensus       234 N~~  236 (261)
                      +..
T Consensus        83 ~~~   85 (95)
T cd05717          83 TMP   85 (95)
T ss_pred             cCC
Confidence            654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.47  E-value=0.00027  Score=44.32  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +.|++.++..+|+|.|+|.|.|..... +.++.|.|.
T Consensus        65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~-s~tF~l~v~  100 (101)
T cd05860          65 SELHLTRLKGTEGGTYTFLVSNSDASA-SVTFNVYVN  100 (101)
T ss_pred             EEEEEeecChhhCcEEEEEEECCCCeE-EEEEEEEEe
Confidence            479999999999999999999998877 667777764

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.41  E-value=0.0012  Score=41.22  Aligned_cols=73  Identities=11%  Similarity=0.182  Sum_probs=42.2

Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCc---eeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR---GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      .+.+.|.+.+..|+.+|.|+++..+....  .......+.   .+.|.+.....+|...|+|++.+..-.......+.
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~   92 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT   92 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            46789988866655599999863221100  000001111   34577766666777799999999754444433333

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.40  E-value=0.00038  Score=45.21  Aligned_cols=35  Identities=29%  Similarity=0.503  Sum_probs=26.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|.|.+++.+|+|.|.|.+...........+.|.|
T Consensus        80 sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   80 SLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             EEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             EEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            69999999999999999998773333234455544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>TIGR00864 PCC polycystin cation channel protein

Probab=97.39  E-value=0.084  Score=51.66  Aligned_cols=191  Identities=12%  Similarity=0.053  Sum_probs=106.8

Q ss_pred             cCCCCCCEeEEE--EEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc
Q psy11549         26 KVSRQSAGTYKC--SAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETL  103 (261)
Q Consensus        26 ~~~~~D~G~Y~C--~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~  103 (261)
                      .++..+.|.|.-  .|.|..|.. +....+.|.++-.-.........+..|+.+.+.-.....+.. .+.|...+. ...
T Consensus      1663 ~vt~~~pG~Y~VtL~aSN~vG~~-t~s~~i~v~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~v-ty~W~~gdG-~s~ 1739 (2740)
T TIGR00864      1663 KLNPLEAGPCDIFLQAANLLGQA-TADCTIDFLEPAGNLMLQASDNPAAVNALINLSAELAEGSGL-QYRWFLEEG-DDL 1739 (2740)
T ss_pred             EEecCCCceEEEEEEEeecccce-eeEEEEEEEEEcCceEEeccCCcccCCCeEEEEEEecCCCCc-EEEEEECCC-CCc
Confidence            345678899966  557888776 555566666543222111111335578889888766666555 899987653 222


Q ss_pred             ccCCceEEeCCceeEEEEecCCCCcCeEEE--EEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEe---------ecCCe
Q psy11549        104 DVGSERFSSGSRGSMLRYTPVTELDYGTLS--CAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRN---------ETTSS  172 (261)
Q Consensus       104 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~--C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~---------~~~~~  172 (261)
                      ......+          ...  ....|.|.  ..|.|..+....  ...|.|..+....   .+..         ..+..
T Consensus      1740 ~~s~p~~----------tHt--f~~~G~y~VtVta~N~vss~~~--s~~V~VqepV~GL---~i~~~~~~~~~~~~ag~~ 1802 (2740)
T TIGR00864      1740 ETSEPFM----------SHS--FPSAGLHLVTMKAFNELGSANA--SEEVDVQEPISGL---KIRAADAGEQNFFAADSS 1802 (2740)
T ss_pred             ccCCCce----------EEE--ccCCceEEEEEEEEccccccce--eEEEEEEeccccc---eEecCCCCcccceecCcE
Confidence            1111110          011  22345554  456787776665  3445554544322   2211         12333


Q ss_pred             EEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        173 VHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       173 ~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      +.+.=++  ..|.+..|.|.+......       ..  ....   ....+.|.|.+++.|.|.+|....+..+.+..+
T Consensus      1803 v~F~a~v--stGsnVsw~W~f~~g~s~-------~g--k~v~---~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~ 1866 (2740)
T TIGR00864      1803 VCFQGEL--ATGTNVSWCWAIDGGSSK-------MG--KHAC---MTFPDAGTFAIRLNASNAVSGKSASREFFAEEP 1866 (2740)
T ss_pred             EEEEEEc--cCCCeeEEEEEeCCCCcc-------cc--ceeE---EecCCCeEEEEEEEEEcccCcceeeeeEEEEEe
Confidence            3333333  567778888876432211       11  1111   226788999999999999998888877766533

Note: this model has been restricted to the amino half because for technical reasons.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.38  E-value=0.0022  Score=40.13  Aligned_cols=70  Identities=14%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             EEeeCCCcEEE-EEEEeeCCCCceeEEEEcCCcccc----ccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDI-HCAVEADPPARSFKWKFNNSGETL----DVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l-~C~~~~~~~~~~~~W~~~~~~~~~----~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ..+..|+.+.+ .|.+.+..|+.+|.|+.+..+..-    ...+..+.   -.+.+.+.....+|...++|.+....-
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~T---V~S~~~l~p~r~d~G~~vtC~V~H~al   85 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTT---VTSEYIWVPSRHANGHPLTCVVSHPAL   85 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEE---EEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence            55668888888 898876666559999976433210    00111111   133566666667777799999988643

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.35  E-value=0.00018  Score=42.80  Aligned_cols=27  Identities=41%  Similarity=0.629  Sum_probs=23.1

Q ss_pred             EEEECCeEEEccCCCCCCEeEEEEEEe
Q psy11549         15 IILSNQSLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        15 ~~~~~~~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      ....+++|.|.++..+|.|.|+|.|.|
T Consensus        49 ~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   49 SSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            334456899999999999999999986

...

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.33  E-value=0.0011  Score=41.35  Aligned_cols=68  Identities=7%  Similarity=0.039  Sum_probs=41.4

Q ss_pred             EeecCCeEEEEeecCCCCCCCeEEEEEEEeC-----Cccce-----------eE--EE--ecCCCCcEEEcCCCCCCccE
Q psy11549        166 RNETTSSVHISCTPGYDGGLPQTFTLELYSA-----SDLNL-----------LV--NL--TNLDTPAFTLEDLGLDGTVL  225 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-----~~~~~-----------~~--~~--~~~~~~~~~i~~~~l~~~~~  225 (261)
                      ....|+.++|.|..   .+.+..+..|++..     +..+.           .+  ..  .......|+|.+++.+|.|.
T Consensus         3 ~~~~G~~VtL~C~~---s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           3 LGKKGDTAELPCTA---SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             EeeCCCCEEEEEEe---CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence            34569999999996   23344444454211     00000           01  00  01223469999999999999


Q ss_pred             EEEEEEEEcCCCc
Q psy11549        226 MRVVISGVNAKGR  238 (261)
Q Consensus       226 Y~~~~~a~N~~G~  238 (261)
                      |  .|.+.|..+.
T Consensus        80 Y--~C~v~~~~~~   90 (94)
T cd07690          80 Y--ICEVEDKKEE   90 (94)
T ss_pred             E--EEEECCccce
Confidence            9  8889888763

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.31  E-value=0.00057  Score=43.38  Aligned_cols=68  Identities=15%  Similarity=0.222  Sum_probs=38.6

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCce-EEe-CCc---eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSER-FSS-GSR---GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~-~~~-~~~---~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .++.++|.|.+.+..+ ...+.|++++........... ... ++.   .+.|.+..-..++...|+|.+....
T Consensus        16 ~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          16 KSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             cCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            5677999999998755 668999998753211100000 111 111   2234343333334679999998753

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.28  E-value=0.0036  Score=39.18  Aligned_cols=68  Identities=22%  Similarity=0.193  Sum_probs=38.3

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCC--ceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGS--RGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .|+.++|.|.+.+..+ ..++.|++++..............++  ..+....-.+...+...|+|.+....
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            5788999999999755 55899999875322111111111111  11111112333445668999998754

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.26  E-value=0.00091  Score=37.97  Aligned_cols=53  Identities=23%  Similarity=0.353  Sum_probs=35.3

Q ss_pred             eeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ...|.+++|.|.....    .+.|.+++..  .  ..       ....+.+.+.. +++|.|.|.+.+.
T Consensus         4 sisGTtVtlTCP~~~~----~i~W~~n~~~--~--~g-------~~~~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           4 SISGTTVTVTCPLSGD----DIKWKKNDQV--S--QG-------SDEKYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EEeccEEEEECCCCCC----CceEEeCCcc--C--CC-------CCceEEeeccC-CCCceEEEEeCCC
Confidence            3579999999986533    4999998731  1  11       11134555555 8899999998643

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.23  E-value=0.0013  Score=39.79  Aligned_cols=57  Identities=16%  Similarity=0.234  Sum_probs=38.8

Q ss_pred             CCCCeeccCCCCce-----EEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549          1 MAGGIPLAHNTSAR-----IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY   57 (261)
Q Consensus         1 ~~ng~~l~~~~~~~-----~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~   57 (261)
                      ||||++|.+.....     ....-++|.|..-..+|...|+|+|.|..-........|.|.+
T Consensus        20 ~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883          20 FKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            68999997542211     1112247999988999999999999887644445567777764

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.22  E-value=0.0026  Score=39.82  Aligned_cols=75  Identities=15%  Similarity=0.248  Sum_probs=42.2

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe-CC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS-GS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .....+.|.+.+..|+.+|.|+++..+..   ....... .+   ..+.|.+.....++...|+|.+.+..-.......+
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~---~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~   91 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEA---ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSV   91 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcc---eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            34567899996555544999998622111   0001011 11   13466676666667779999999875443333333


Q ss_pred             EE
Q psy11549        150 QV  151 (261)
Q Consensus       150 ~v  151 (261)
                      .+
T Consensus        92 ~L   93 (95)
T cd05719          92 TL   93 (95)
T ss_pred             Ee
Confidence            33

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.11  E-value=0.0044  Score=38.92  Aligned_cols=29  Identities=21%  Similarity=0.399  Sum_probs=23.8

Q ss_pred             eeCCCcEEEEEEEeeC--CCCceeEEEEcCC
Q psy11549         71 ASRSESVDIHCAVEAD--PPARSFKWKFNNS   99 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~   99 (261)
                      +..|+.++|.|.+.+.  |+...+.|.+++.
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~   41 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG   41 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence            3458899999999999  6666899999863

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.07  E-value=0.0058  Score=38.22  Aligned_cols=70  Identities=20%  Similarity=0.239  Sum_probs=38.8

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCc-eEEeCCc----eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSE-RFSSGSR----GSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ....++|.|.+.+..| ..++.|.+++.......... .....++    .+.|.+..-...+...|+|.+......
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            4566899999999655 56899999875321111010 1111111    223334432223556999999876433

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.06  E-value=0.008  Score=37.45  Aligned_cols=66  Identities=15%  Similarity=0.165  Sum_probs=38.1

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeC-Ccee-EEEEecCCCCcCeEEEEEEEcC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSG-SRGS-MLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~-~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .|...+|.|.+.+..+ ...+.|.+++.... .........+ +.+. ......+...+...|+|.+...
T Consensus        14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             CCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            4667799999999654 66899999885322 1111111111 1111 1122233456677899999874

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.03  E-value=0.11  Score=41.01  Aligned_cols=163  Identities=13%  Similarity=0.123  Sum_probs=83.7

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEEe-eceeecCceeEEEeeCCCcEEEEEEEeeCCC--CceeEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKY-APICKSDRIVIVGASRSESVDIHCAVEADPP--ARSFKWKF   96 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~   96 (261)
                      +|.|.++...|.|.|.-...+..... ....+.+.+.. +|.+....   -.+..|++-...|.+...-+  ...+.|+.
T Consensus       208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a---~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~  284 (490)
T PHA03271        208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA---PPVLSGENYKASCIVRHFYPPGSVYVSWRQ  284 (490)
T ss_pred             eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            79999999999997755444444433 12333444443 33333222   23569999999999987655  33699999


Q ss_pred             cCCcccccc-CCceE--EeC----CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC--CCCcceEEe
Q psy11549         97 NNSGETLDV-GSERF--SSG----SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRN  167 (261)
Q Consensus        97 ~~~~~~~~~-~~~~~--~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~--~p~~~~v~~  167 (261)
                      ++....... .+...  ...    ...+.+.+.+...+.--..+|.+.-..+.....  +  .....|.  ++..+.+.-
T Consensus       285 nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~--r--nAaatP~VY~~P~ISv~F  360 (490)
T PHA03271        285 NGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMIST--T--NATAIPTVYHHPRISLAF  360 (490)
T ss_pred             CCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceee--e--ecccCCccccCCeEEEEE
Confidence            875322111 11111  001    112234444433233348899987654433332  1  3333332  333445543


Q ss_pred             ecCCeE-EEEeecCCCCCCCeEEEEEEEe
Q psy11549        168 ETTSSV-HISCTPGYDGGLPQTFTLELYS  195 (261)
Q Consensus       168 ~~~~~~-~l~c~~~~~~~~p~~~~~~~~~  195 (261)
                      ..|..+ +..|-+  +   ...+.|+.++
T Consensus       361 edG~AVCtA~CVP--~---gV~lrWlVgD  384 (490)
T PHA03271        361 KDGYAICTIECVP--S---GITVRWLVHD  384 (490)
T ss_pred             eCCEEEEeccccC--C---CcEEEEEecC
Confidence            334333 333544  1   2355565554

>PHA03270 envelope glycoprotein C; Provisional

Probab=96.97  E-value=0.13  Score=40.87  Aligned_cols=78  Identities=17%  Similarity=0.239  Sum_probs=55.4

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC--CceeEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP--ARSFKWKF   96 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~   96 (261)
                      ..|.|..++...+|.|+=...+..+.. ....++|....+|.+....   -.+..|++-.-.|.+....+  ...+.|+.
T Consensus       182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~  258 (466)
T PHA03270        182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP---HAVLEGEPFGATCVAANYYPGDRAAFRWFE  258 (466)
T ss_pred             ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            359999999999999998876665543 2334455554566544332   23569999999999987655  33699999


Q ss_pred             cCCc
Q psy11549         97 NNSG  100 (261)
Q Consensus        97 ~~~~  100 (261)
                      ++..
T Consensus       259 ng~~  262 (466)
T PHA03270        259 GGDE  262 (466)
T ss_pred             CCcc
Confidence            8853

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=96.96  E-value=0.0086  Score=38.73  Aligned_cols=69  Identities=9%  Similarity=0.073  Sum_probs=41.2

Q ss_pred             CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCC-ccc-------------------eeEEEe--cCCCCcEEEcC
Q psy11549        160 PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSAS-DLN-------------------LLVNLT--NLDTPAFTLED  217 (261)
Q Consensus       160 p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~-~~~-------------------~~~~~~--~~~~~~~~i~~  217 (261)
                      |..+.+  ..|+.++|.|..  ..  +..+..||+... ..+                   ..+...  ......|+|.+
T Consensus         5 p~~~~v--~~G~~v~l~C~~--~~--~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~   78 (110)
T cd05899           5 PRYLIK--GRGQSVTLRCSQ--TS--GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKS   78 (110)
T ss_pred             CCceEE--cCCCcEEEEEEE--CC--CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECC
Confidence            443444  459999999997  22  334455555432 111                   111111  12346789999


Q ss_pred             CCCCCccEEEEEEEEEcCC
Q psy11549        218 LGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       218 ~~l~~~~~Y~~~~~a~N~~  236 (261)
                      ++.+|.|.|  .|.+.+..
T Consensus        79 ~~~~Dsg~Y--~Ca~~~~~   95 (110)
T cd05899          79 AEPEDSAVY--LCASSLGG   95 (110)
T ss_pred             CChhhCEEE--EEEeeCCC
Confidence            999999999  77766543

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=96.96  E-value=0.00074  Score=43.25  Aligned_cols=24  Identities=17%  Similarity=0.475  Sum_probs=22.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG   44 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~   44 (261)
                      +|.|.+++.+|+|.|.|.+.+..+
T Consensus        68 sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          68 TLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             EEEECCCCHHHCEEEEEEEecCCC
Confidence            899999999999999999987664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.96  E-value=0.0028  Score=38.64  Aligned_cols=65  Identities=22%  Similarity=0.188  Sum_probs=38.5

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEE-eCCc----eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFS-SGSR----GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+..++|.|.+.+..+ ...+.|++++............. ..++    .+.|.+.   ..+...|+|.+....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            4889999999998755 66899998875311110000111 1111    2244444   455568999998754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=96.95  E-value=0.012  Score=37.88  Aligned_cols=64  Identities=6%  Similarity=0.049  Sum_probs=39.0

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCc-cc---------------eeEEEe---cCCCCcEEEcCCCCCCccEEEE
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASD-LN---------------LLVNLT---NLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~-~~---------------~~~~~~---~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      ..|+.++|.|...  .. +.....||+.... .+               ..+...   ......+.|.+++.+|+|.|  
T Consensus        11 ~~G~~v~L~C~~~--~~-~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y--   85 (109)
T cd04983          11 QEGENVTLNCNYS--TS-TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVY--   85 (109)
T ss_pred             cCCCCEEEEEEEC--CC-CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEE--
Confidence            5699999999973  22 3334445554221 11               111111   12346789999999999999  


Q ss_pred             EEEEEcCC
Q psy11549        229 VISGVNAK  236 (261)
Q Consensus       229 ~~~a~N~~  236 (261)
                      .|.+.+..
T Consensus        86 ~C~~~~~~   93 (109)
T cd04983          86 FCALSESG   93 (109)
T ss_pred             EEEEecCC
Confidence            77777654

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.88  E-value=0.0098  Score=37.30  Aligned_cols=27  Identities=19%  Similarity=0.212  Sum_probs=21.6

Q ss_pred             CCCcEEEEEEEeeCC-CCceeEEEEcCC
Q psy11549         73 RSESVDIHCAVEADP-PARSFKWKFNNS   99 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~-~~~~~~W~~~~~   99 (261)
                      .+..++|.|.+.+.. ....+.|.+++.
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~   42 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNS   42 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCE
Confidence            456789999999964 466899999875

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.85  E-value=0.013  Score=37.73  Aligned_cols=67  Identities=10%  Similarity=0.112  Sum_probs=44.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCC--ceeEEEEcCCccccc-------------cCCceE----EeCCceeEEEEecCCCCcC
Q psy11549         69 VGASRSESVDIHCAVEADPPA--RSFKWKFNNSGETLD-------------VGSERF----SSGSRGSMLRYTPVTELDY  129 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~-------------~~~~~~----~~~~~~~~l~i~~~~~~d~  129 (261)
                      ..+..|..++|.|.+.+....  ..+.|++...+ .++             ....++    ..+.+...|.+.++..+|.
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DT   86 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQT   86 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHC
Confidence            446678889999999765543  26889875433 211             011111    2244456899999999999


Q ss_pred             eEEEEEE
Q psy11549        130 GTLSCAA  136 (261)
Q Consensus       130 g~y~C~~  136 (261)
                      +.|.|..
T Consensus        87 a~Y~Ca~   93 (115)
T cd05721          87 DIYFCKI   93 (115)
T ss_pred             eEEEEEe
Confidence            9999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=96.85  E-value=0.0018  Score=40.94  Aligned_cols=22  Identities=18%  Similarity=0.460  Sum_probs=19.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      +|.|.+++.+|+|.|.|.+.+.
T Consensus        64 ~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          64 SLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             EEEECCCChhhCEEEEEEEccC
Confidence            7999999999999999988643

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>KOG0196|consensus

Probab=96.82  E-value=0.015  Score=49.69  Aligned_cols=81  Identities=17%  Similarity=0.201  Sum_probs=58.0

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCCCCC-CC-eEEEEEEEeCCccc---------eeE--EEecCCCCcEEEcCCCC
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGG-LP-QTFTLELYSASDLN---------LLV--NLTNLDTPAFTLEDLGL  220 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~-~p-~~~~~~~~~~~~~~---------~~~--~~~~~~~~~~~i~~~~l  220 (261)
                      ..||+.|+++... ..+.++.|.|+++.+.| -+ +.|.+..+.-....         ..+  ....-.++.++|.+  |
T Consensus       329 T~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~--L  405 (996)
T KOG0196|consen  329 TRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSD--L  405 (996)
T ss_pred             CCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEec--c
Confidence            4688888887665 78999999999876544 33 66887765522111         111  12233567899999  9


Q ss_pred             CCccEEEEEEEEEcCCC
Q psy11549        221 DGTVLMRVVISGVNAKG  237 (261)
Q Consensus       221 ~~~~~Y~~~~~a~N~~G  237 (261)
                      .+-.+|.|.+.|.|.+.
T Consensus       406 ~ah~~YTFeV~AvNgVS  422 (996)
T KOG0196|consen  406 LAHTNYTFEVEAVNGVS  422 (996)
T ss_pred             ccccccEEEEEEeeccc
Confidence            99999999999999886

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.81  E-value=0.0083  Score=37.50  Aligned_cols=64  Identities=22%  Similarity=0.243  Sum_probs=36.4

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeC-Cc----eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSG-SR----GSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .++.++|.|.+.+..+ ...+.|.+++..............+ +.    .+.|.+.   +.+...|+|.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence            4566799999999654 6689999987531110000011111 11    2234443   34556899999875

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PHA02633 hypothetical protein; Provisional

Probab=96.76  E-value=0.0066  Score=33.90  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=24.2

Q ss_pred             eEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549        117 SMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus       117 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      ..|.|-++..+|+|.|.|...|..--...+
T Consensus        18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~s   47 (63)
T PHA02633         18 NNMLILNPTQSDSGIYMCITKNETYSDMMK   47 (63)
T ss_pred             ccEEEeccccccCcEEEEEEcCCCeeEEEE
Confidence            369999999999999999999865444443

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=96.71  E-value=0.0042  Score=43.40  Aligned_cols=41  Identities=17%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeC-CCcceeeeEEEEEEee
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRVKYA   58 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V~~~   58 (261)
                      .+.+|+|.+++.+|+|.|+|....- .|...+.++-|.|...
T Consensus        83 ~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987         83 NESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             CcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence            4579999999999999999987544 4424477888888743

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.65  E-value=0.0068  Score=39.42  Aligned_cols=72  Identities=22%  Similarity=0.297  Sum_probs=39.7

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEe-CC-c----eeEEEEecCCCCc-CeEEEEEEEcCCceEE
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSS-GS-R----GSMLRYTPVTELD-YGTLSCAAQNAIGTQV  144 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~-~~-~----~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~  144 (261)
                      .++.++|.|.+.+..+ ...+.|.+++.............. .+ .    .+.|.+......+ ...|+|.+........
T Consensus        17 ~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~~   96 (115)
T cd05769          17 NKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTDT   96 (115)
T ss_pred             cCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCccc
Confidence            4667899999999765 458999998743111100000111 11 1    2234444332223 4589999987644433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PHA03273 envelope glycoprotein C; Provisional

Probab=96.60  E-value=0.28  Score=39.47  Aligned_cols=119  Identities=18%  Similarity=0.198  Sum_probs=69.7

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE--EeeceeecCceeEEEeeCCCcEEEEEEEeeCCC--CceeEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV--KYAPICKSDRIVIVGASRSESVDIHCAVEADPP--ARSFKWKF   96 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V--~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~~~~W~~   96 (261)
                      .|.|..++..++|.|+=...+..+.. ....++.|  ..+|.+....   ..+..|++-.-.|.+...-+  ...+.|+.
T Consensus       199 ~LtI~sltaaTeGvYtWr~~~~n~t~-~~~~~VtV~~yr~Psvsv~~---~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~  274 (486)
T PHA03273        199 PLTIKSVDWRTAGVYVWSLYAKNGTL-VNSTSVTVSTYNAPLVDLSV---HPSLKGENYRAVCVVASYFPHSSVKLRWYK  274 (486)
T ss_pred             ceEEEecchhhceEEEEEEecCCCce-eeeeEEEEEEecCCcccccC---CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence            49999999999999985544554433 33345555  4566544322   23569999999999987655  34699999


Q ss_pred             cCCccccccC-CceEE--eCCc---eeEEEEecCCC-CcCeEEEEEEEcCCceE
Q psy11549         97 NNSGETLDVG-SERFS--SGSR---GSMLRYTPVTE-LDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        97 ~~~~~~~~~~-~~~~~--~~~~---~~~l~i~~~~~-~d~g~y~C~~~~~~~~~  143 (261)
                      ++........ .....  ..+.   .+.|.+..... +.--..+|.+.-..+..
T Consensus       275 dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~v  328 (486)
T PHA03273        275 NAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEV  328 (486)
T ss_pred             CCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCc
Confidence            8853221000 00111  1111   23444444322 23347899987554443

>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors

Probab=96.59  E-value=0.034  Score=35.37  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCc-----EEEcCCCCCCccEEEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPA-----FTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~i~~~~l~~~~~Y~~~  229 (261)
                      +|..|.++.-....-..++..|+++..++.+..|.+.|.......... .........     +.+..-...-...|.++
T Consensus         7 ~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~~y~L~Y~~~~~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~i~   86 (104)
T PF09067_consen    7 PPEKPENLKCFSREMETFTCFWEPGSEGNLPTNYTLFYKKEGEEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYCIQ   86 (104)
T ss_dssp             HCCCCEEEEEEBSSSS-EEEEEEEESSSTSTCEEEEEEEETTSEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEEEE
T ss_pred             CCCCCccCccCCCCCCcEEEEeeCCCCCCCCCcEEEEEEeCCCCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEEEE
Confidence            566777766666678899999999888888877999988876332222 223223334     56663336677899999


Q ss_pred             EEEEcCCCcC
Q psy11549        230 ISGVNAKGRS  239 (261)
Q Consensus       230 ~~a~N~~G~~  239 (261)
                      |.|.|..|..
T Consensus        87 V~a~~~~~~~   96 (104)
T PF09067_consen   87 VEATNALGSI   96 (104)
T ss_dssp             EEEEETTEEE
T ss_pred             EEeccCCCcE
Confidence            9999999854

The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.56  E-value=0.0056  Score=38.98  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=22.1

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNS   99 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~   99 (261)
                      .+..++|.|.+.+..+ ...+.|.+++.
T Consensus        15 ~~~~~tL~C~a~gFyP~~i~v~W~k~g~   42 (102)
T cd05768          15 LQETATLTCLVKGFSPSDIFVKWLQNGQ   42 (102)
T ss_pred             cCCceEEEEEEeeEeCCCCEEEEEECCE
Confidence            4678999999999765 55789999875

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.56  E-value=0.018  Score=36.88  Aligned_cols=63  Identities=8%  Similarity=0.067  Sum_probs=35.8

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCC-ccce---------------eEEEe-cCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSAS-DLNL---------------LVNLT-NLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~-~~~~---------------~~~~~-~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      ..|+.++|.|...  +.....+..||+... ..+.               .+... ......|.|.+++++|.|.|  .|
T Consensus        13 ~~G~~v~L~C~~~--~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y--~C   88 (106)
T cd04980          13 SPGESATISCKAS--QSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVY--YC   88 (106)
T ss_pred             CCCCCEEEEEEEC--CCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEE--EE
Confidence            5699999999972  221123444554422 1110               11111 11223588999999999999  66


Q ss_pred             EEEc
Q psy11549        231 SGVN  234 (261)
Q Consensus       231 ~a~N  234 (261)
                      .+.+
T Consensus        89 a~~~   92 (106)
T cd04980          89 QQYG   92 (106)
T ss_pred             EEeC
Confidence            6644

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.54  E-value=0.006  Score=40.16  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=38.9

Q ss_pred             eCCCcEEEEEEEeeCCC----CceeEEEEcCCccccccCCc--eE-----------EeCCceeEEEEecCCCCcCeEEEE
Q psy11549         72 SRSESVDIHCAVEADPP----ARSFKWKFNNSGETLDVGSE--RF-----------SSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~----~~~~~W~~~~~~~~~~~~~~--~~-----------~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      .=.++|.|+|.+.....    ...+.|.++++. .......  ..           ....+.++|.+.....- .|+|+|
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~-If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKD-IFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEE-EEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeE-EEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            35778999999875222    235999887642 1111111  00           01223445777653333 799999


Q ss_pred             EEEcCCceEEeeEEEE
Q psy11549        135 AAQNAIGTQVTPCLYQ  150 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~  150 (261)
                      .+............+.
T Consensus       103 eVt~~~~ege~~i~Lk  118 (130)
T PF08204_consen  103 EVTELSREGETTIELK  118 (130)
T ss_dssp             EEEETTEEEEEEEEEE
T ss_pred             EEEecCCCceEEEEEE
Confidence            9998776666543333

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=96.52  E-value=0.0028  Score=40.77  Aligned_cols=21  Identities=29%  Similarity=0.662  Sum_probs=19.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .|+|.+++.+|+|.|.|...+
T Consensus        73 ~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          73 RLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             EEEECCCCHHHCEEEEEeEcC
Confidence            599999999999999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.46  E-value=0.004  Score=39.32  Aligned_cols=23  Identities=22%  Similarity=0.500  Sum_probs=20.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      +|.|.+++.+|+|.|.|.+....
T Consensus        65 ~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          65 TVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             EEEEcCCCHHHCEEEEEEcccCC
Confidence            79999999999999999886654

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.39  E-value=0.032  Score=34.82  Aligned_cols=67  Identities=21%  Similarity=0.258  Sum_probs=39.5

Q ss_pred             eeCCCcEEEEEEEeeCCCC--ceeEEEEcCCccccccCCceEE-------eCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         71 ASRSESVDIHCAVEADPPA--RSFKWKFNNSGETLDVGSERFS-------SGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +..|..+++.|.+.+..+.  ..+.|++...  .+.  ...+.       .......+++.....++..+|+|.|.-..+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~--~l~--~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGET--LLP--SKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcc--eec--ccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence            4689999999999866553  4789986442  111  11111       111223556655444444499999986443

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.38  E-value=0.02  Score=36.02  Aligned_cols=27  Identities=19%  Similarity=0.485  Sum_probs=22.1

Q ss_pred             CCCcEEEEEEEeeCC-C-CceeEEEEcCC
Q psy11549         73 RSESVDIHCAVEADP-P-ARSFKWKFNNS   99 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~-~-~~~~~W~~~~~   99 (261)
                      .+..++|.|.+.+.. + ...+.|.+++.
T Consensus        18 ~~~~atLtClV~~f~~P~~i~V~W~~~g~   46 (99)
T cd04986          18 LGSSASLTCTLSGLRDPEGAVFTWTPSGG   46 (99)
T ss_pred             cCCccEEEEEEeccCCCCCeEEEEEECCc
Confidence            577899999999865 3 56899998875

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.36  E-value=0.0048  Score=45.34  Aligned_cols=38  Identities=26%  Similarity=0.464  Sum_probs=30.4

Q ss_pred             CCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEe
Q psy11549          3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      ||+.|.++ +...+.+.|.|.+.+...+|+|.|+|+..-
T Consensus        21 ~g~~l~gn-~~~nIT~TG~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   21 NGKPLSGN-SYVNITETGKLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             CCcccCCC-CeEEEccCceEEeeccccccCCceEEEEEE
Confidence            67777643 346667788999999999999999998743

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.35  E-value=0.016  Score=36.44  Aligned_cols=37  Identities=22%  Similarity=0.433  Sum_probs=30.4

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +-+|.|..++++|+|.|.-.+.+..|......+.|.|
T Consensus        70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   70 NLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             CceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            5599999999999999999999999998677676666

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.27  E-value=0.0022  Score=38.72  Aligned_cols=19  Identities=32%  Similarity=0.672  Sum_probs=17.7

Q ss_pred             CeEEEccCCCCCCEeEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCS   38 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~   38 (261)
                      .+|.|.+++.+|+|.|.|.
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEc
Confidence            3799999999999999996

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.24  E-value=0.026  Score=35.39  Aligned_cols=27  Identities=26%  Similarity=0.551  Sum_probs=21.7

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNS   99 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~   99 (261)
                      .++.++|.|.+.+..+ ...+.|.+++.
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~   42 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSN   42 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCE
Confidence            4567899999999654 66899999875

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R

Probab=96.23  E-value=0.094  Score=33.69  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=53.7

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EE---ecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NL---TNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      ....+|.++++.. ..-..+|.|+++........|.++|+.....  .| ..   .......+-+++........|.++|
T Consensus        20 ~~lp~P~nv~~~s-~nf~~iL~W~~~~~~~~~~~ytVq~~~~~~~--~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV   96 (107)
T PF01108_consen   20 ASLPAPQNVTVDS-VNFKHILRWDPGPGSPPNVTYTVQYKKYGSS--SWKDVPGCQNITETSCDLTDETSDPSESYYARV   96 (107)
T ss_dssp             SSGSSCEEEEEEE-ETTEEEEEEEESTTSSSTEEEEEEEEESSTS--CEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred             ccCCCCCeeEEEE-ECCceEEEeCCCCCCCCCeEEEEEEEecCCc--ceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence            4455777888774 3666899999844444557799999943333  33 11   2234578888886666788999999


Q ss_pred             EEEcCCC
Q psy11549        231 SGVNAKG  237 (261)
Q Consensus       231 ~a~N~~G  237 (261)
                      +|.-.-.
T Consensus        97 ~A~~~~~  103 (107)
T PF01108_consen   97 RAEVGNQ  103 (107)
T ss_dssp             EEEETTE
T ss_pred             EEEeCCc
Confidence            9965443

...

>KOG1480|consensus

Probab=96.21  E-value=0.0055  Score=51.77  Aligned_cols=55  Identities=18%  Similarity=0.367  Sum_probs=42.4

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      |||+..+.+ +.......+..|++..+.+.|.|+|+|+|.|..+...+-++.+.|.
T Consensus       165 ~k~e~~~~p-d~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  165 LKNEVVIDP-DANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             cccCCCCCc-cccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            577777776 4446667788999999999999999999999887764444444443

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=96.10  E-value=0.0059  Score=40.16  Aligned_cols=23  Identities=17%  Similarity=0.223  Sum_probs=20.5

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        80 ~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          80 CSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEEEccCChhhCeEEEEEEEcC
Confidence            37999999999999999988664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=95.92  E-value=0.039  Score=31.74  Aligned_cols=50  Identities=22%  Similarity=0.388  Sum_probs=34.4

Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      ..+.+.|.|...     .+|.|++ +.. .....         ...|.+-....+-.|.|.|.+.+
T Consensus         5 ~~~~V~L~C~~~-----tsi~W~k-G~~-~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNGA-----TNITWKK-GKE-ILEVS---------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecCC-----CcEEEec-Ccc-ccccc---------ccEEeccCcccCCCcceEecCcc
Confidence            355789999662     2799998 432 11111         22678888888899999999876

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=95.78  E-value=0.079  Score=34.56  Aligned_cols=64  Identities=8%  Similarity=0.064  Sum_probs=37.3

Q ss_pred             EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc----------------eeEEEe---cCCCCcEEEcCCCCCCccEE
Q psy11549        166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN----------------LLVNLT---NLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~----------------~~~~~~---~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      ....|+.++|.|...  ......+..||+......                ..+...   ......|.|.+++++|.|.|
T Consensus        10 ~~~~G~~v~L~C~~~--~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y   87 (116)
T cd07706          10 SVQVGEEVTLNCRYE--TSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY   87 (116)
T ss_pred             EEcCCCCEEEEEEEe--CCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence            335699999999862  222334555555432211                112111   12235688999999999999


Q ss_pred             EEEEEEE
Q psy11549        227 RVVISGV  233 (261)
Q Consensus       227 ~~~~~a~  233 (261)
                        .|.+.
T Consensus        88 --~C~~~   92 (116)
T cd07706          88 --FCALS   92 (116)
T ss_pred             --EEEEE
Confidence              55554

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=95.66  E-value=0.0079  Score=38.47  Aligned_cols=20  Identities=30%  Similarity=0.619  Sum_probs=18.8

Q ss_pred             eEEEccCCCCCCEeEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAI   40 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~   40 (261)
                      +|.|.+++.+|+|.|.|.+.
T Consensus        70 ~L~I~~~~~sDsgtY~Ca~~   89 (104)
T cd05720          70 VLTLKNFQKENEGYYFCSVA   89 (104)
T ss_pred             EEEECCCCHHHCEEEEEEEc
Confidence            79999999999999999875

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology

Probab=95.60  E-value=0.053  Score=34.70  Aligned_cols=82  Identities=17%  Similarity=0.262  Sum_probs=48.2

Q ss_pred             ceEEeecCCeEEEEeecCC----CCC--------CC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        163 CSVRNETTSSVHISCTPGY----DGG--------LP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       163 ~~v~~~~~~~~~l~c~~~~----~~~--------~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      +.+. ..+..+.+.+..+.    .++        .+ ..|.+.+...+....... .......++|.+  |.+++.|.++
T Consensus         8 v~v~-~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~-~~~~~~~~~l~~--L~p~t~YCv~   83 (106)
T PF09294_consen    8 VNVS-SCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKE-IETKNSSVTLSD--LKPGTNYCVS   83 (106)
T ss_dssp             EEEE-EETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEE-EESSSEEEEEES----TTSEEEEE
T ss_pred             EEEE-ECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEE-EeecCCEEEEeC--CCCCCCEEEE
Confidence            4553 45888888887643    011        22 457787777666522222 334456779999  9999999999


Q ss_pred             EEEEcCC--CcCCceeeeeee
Q psy11549        230 ISGVNAK--GRSLPVIWDDFS  248 (261)
Q Consensus       230 ~~a~N~~--G~~~~s~~~~~~  248 (261)
                      +.|....  ..|.+|.+..+.
T Consensus        84 V~~~~~~~~~~s~~S~~~C~~  104 (106)
T PF09294_consen   84 VQAFSPSQNKNSQPSEPQCIT  104 (106)
T ss_dssp             EEEEECSSTEEEEEBSEEEEE
T ss_pred             EEEEeccCCCcCCCCCCEeEe
Confidence            9983222  255566555443

They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.58  E-value=0.051  Score=34.32  Aligned_cols=66  Identities=11%  Similarity=-0.040  Sum_probs=37.0

Q ss_pred             cCCeEEEEeecCCCCCCCeEE--EEEEEeCCccceeEEEe-----cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        169 TTSSVHISCTPGYDGGLPQTF--TLELYSASDLNLLVNLT-----NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       169 ~~~~~~l~c~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      .|+.++|.|.+  .++.|...  +.||+............     ......+++.--+-+++..|  +|.|.+.++.
T Consensus        15 eG~~~tL~C~v--~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~--sC~A~l~l~~   87 (100)
T cd05755          15 VGKNYTLQCDV--PGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANF--SCETELDLRP   87 (100)
T ss_pred             CCCcEEEEEEE--cCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEE--EEEEEeccCc
Confidence            49999999998  77777653  46666543332111110     01112333332223344466  9999998874

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=95.54  E-value=0.027  Score=34.17  Aligned_cols=44  Identities=14%  Similarity=0.077  Sum_probs=27.1

Q ss_pred             CCCCeeccCCCCceEEE-ECC------eEEEccCCCCCCEeEEEEEEeCCCc
Q psy11549          1 MAGGIPLAHNTSARIIL-SNQ------SLVLQKVSRQSAGTYKCSAINTKGE   45 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~-~~~------~L~i~~~~~~D~G~Y~C~~~~~~~~   45 (261)
                      ||||++|.... ..... .++      .|.+.....+|.+.|+|.+.+....
T Consensus        20 ~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761          20 FKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            57888886332 11111 122      4555555666778999999888654

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>KOG4367|consensus

Probab=95.51  E-value=0.031  Score=44.07  Aligned_cols=77  Identities=14%  Similarity=0.038  Sum_probs=60.8

Q ss_pred             ecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWD  245 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~  245 (261)
                      ...++++|+|..+.-.+.|. .|.++.-.+..+  .+ ++....+++++|.+  |.-...|.-++.|.|..|.++.|..+
T Consensus       450 t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g--~frevy~g~etmctvdg--lhfns~y~arvka~n~tg~s~ys~tl  525 (699)
T KOG4367|consen  450 THNNSATLSWKQPPLSTVPADGYILELDDGNGG--QFREVYVGKETMCTVDG--LHFNSTYNARVKAFNKTGVSPYSKTL  525 (699)
T ss_pred             ccCCceEEEeecCCCCCCCCcceEEEeecCCCC--ceeEEEecCceeEEecc--eecchhHHHHHHHhhccCCCccccee
Confidence            35789999999544455554 488887766554  34 66667789999999  98899999999999999999998877


Q ss_pred             eee
Q psy11549        246 DFS  248 (261)
Q Consensus       246 ~~~  248 (261)
                      ...
T Consensus       526 ~lq  528 (699)
T KOG4367|consen  526 VLQ  528 (699)
T ss_pred             Eee
Confidence            654

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=95.49  E-value=0.047  Score=33.21  Aligned_cols=45  Identities=16%  Similarity=0.144  Sum_probs=27.5

Q ss_pred             CCCCeeccCCCCceEEEEC-------CeEEEccCCCCCCEeEEEEEEeCCCc
Q psy11549          1 MAGGIPLAHNTSARIILSN-------QSLVLQKVSRQSAGTYKCSAINTKGE   45 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~-------~~L~i~~~~~~D~G~Y~C~~~~~~~~   45 (261)
                      +|||++|...........+       .+|.|.....+|...|+|.+.+....
T Consensus        20 ~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705          20 RKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            5789888643211111112       24555556677889999999887644

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=95.46  E-value=0.079  Score=32.27  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=21.4

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeC
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      .+.+|.+.+++..|+|.++|.+.-.
T Consensus        49 ~~ktL~~~qv~~qdSG~WtC~V~~~   73 (88)
T cd07694          49 DKKTLNLVQLGPNDSGTWDCIVSVN   73 (88)
T ss_pred             CccEEEeceeCcccCCEEEEEEEEC
Confidence            3458999999999999999998543

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA03042 CD47-like protein; Provisional

Probab=95.41  E-value=0.18  Score=37.57  Aligned_cols=65  Identities=20%  Similarity=0.342  Sum_probs=39.3

Q ss_pred             CCCcEEEEEEEeeCC----CCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         73 RSESVDIHCAVEADP----PARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      =.+++.++|.+....    ....+.|.++++. ....++.      ..++|.+ +-...-.|+|+|+|.+.......
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~-If~~n~t------n~aSL~~-~f~~~l~GNYTCEv~~l~n~gk~   98 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKV-IFKKNNT------NTSSLKF-NFSKNLSGNYTCEAINKFNKIKN   98 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCee-EEEecCC------cceEEEE-eccccCCCceeEEEeecccCccE
Confidence            467889999987531    2336999987742 2211111      1234544 34455589999999986554444

>KOG1480|consensus

Probab=95.17  E-value=0.0032  Score=53.11  Aligned_cols=119  Identities=17%  Similarity=0.282  Sum_probs=68.3

Q ss_pred             eEEEccCCCCCCE---eEE--EEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEE
Q psy11549         21 SLVLQKVSRQSAG---TYK--CSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWK   95 (261)
Q Consensus        21 ~L~i~~~~~~D~G---~Y~--C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~   95 (261)
                      ...|+...-++.|   .|.  |.|....|...+..+.+.+.+.-...........+..+..+.+.|...-.-+...+.|+
T Consensus        86 si~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~  165 (909)
T KOG1480|consen   86 SIDISRQQVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWL  165 (909)
T ss_pred             eeeeehhhhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhcc
Confidence            4555555444443   354  45666666433332333322222222223333557788889999976544443379999


Q ss_pred             EcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         96 FNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      +++.....   ...... .....+.+..+...|.|+|+|++.|..+..
T Consensus       166 k~e~~~~p---d~n~~~-~~d~~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  166 KNEVVIDP---DANVIR-ASDHNLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             ccCCCCCc---cccchh-hhcCCccccchhhhhcccceeeeehhhccc
Confidence            98753222   111111 112358899999999999999999976543

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=95.13  E-value=0.27  Score=32.00  Aligned_cols=66  Identities=15%  Similarity=0.157  Sum_probs=37.5

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEeC-Cccc--------------------eeEEEe-cC--CCCcEEEcCCCC
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSA-SDLN--------------------LLVNLT-NL--DTPAFTLEDLGL  220 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-~~~~--------------------~~~~~~-~~--~~~~~~i~~~~l  220 (261)
                      +....|+.++|.|..... ..+..+..||+.. +..+                    ..+... ..  ....|+|.+++.
T Consensus         8 ~~~~~G~~v~l~C~~~~~-~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   86 (116)
T cd04982           8 ITREESKSVTISCKVSGI-DFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK   86 (116)
T ss_pred             EEeCCCCCEEEEEEEeCC-CccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence            344569999999996221 1233345555542 2111                    111111 11  235788999999


Q ss_pred             CCccEEEEEEEEE
Q psy11549        221 DGTVLMRVVISGV  233 (261)
Q Consensus       221 ~~~~~Y~~~~~a~  233 (261)
                      +|+|.|  .|.+.
T Consensus        87 ~Dsg~Y--~C~~~   97 (116)
T cd04982          87 EDSATY--YCAYW   97 (116)
T ss_pred             HHCEEE--EEEEe
Confidence            999999  55553

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.83  E-value=0.075  Score=33.51  Aligned_cols=44  Identities=25%  Similarity=0.237  Sum_probs=31.9

Q ss_pred             eEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549        109 RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus       109 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      ++........|.|..+.+.|+|.|..++++..|.... ..|.|.|
T Consensus        63 r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~-~~FqVsV  106 (108)
T PF11465_consen   63 RFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCT-KNFQVSV  106 (108)
T ss_dssp             HEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEE-EEEEEEE
T ss_pred             eEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEE-EEEEEEe
Confidence            4445555558999999999999999999998887643 3666654

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=94.80  E-value=0.038  Score=36.17  Aligned_cols=21  Identities=19%  Similarity=0.339  Sum_probs=19.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .|.|.+++.+|+|.|.|.+..
T Consensus        77 ~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          77 YLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             EEEECCCCHHHCEEEEEEEEc
Confidence            699999999999999998754

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd00096 Ig Immunoglobulin domain

Probab=94.61  E-value=0.045  Score=31.21  Aligned_cols=27  Identities=30%  Similarity=0.589  Sum_probs=23.1

Q ss_pred             EECCeEEEccCCCCCCEeEEEEEEeCC
Q psy11549         17 LSNQSLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        17 ~~~~~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      .....|.|.+++.+|.|.|.|.+.+..
T Consensus        40 ~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          40 SGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             eeEEEEEECccCcccCcEEEEEEecCc
Confidence            344589999999999999999997765

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PHA02982 hypothetical protein; Provisional

Probab=94.55  E-value=0.11  Score=36.98  Aligned_cols=75  Identities=20%  Similarity=0.356  Sum_probs=50.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--------c-----------CCceEEeCCceeEEEEecCCCCcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--------V-----------GSERFSSGSRGSMLRYTPVTELDY  129 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~-----------~~~~~~~~~~~~~l~i~~~~~~d~  129 (261)
                      +....++.+.|.|.......-....|.... +.-+.        +           ...+.+.++..++|+|.++..+..
T Consensus        34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~-~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         34 VNATVDQEVKLQCLFKDADEISRAMWKGDA-GFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhccCCCcEEEEecCCCcchhhhheeeCCC-CeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            445678999999986544433357786532 21111        0           112235677788999999999999


Q ss_pred             eEEEEEEEcCCceEE
Q psy11549        130 GTLSCAAQNAIGTQV  144 (261)
Q Consensus       130 g~y~C~~~~~~~~~~  144 (261)
                      |=|+|.+....+..+
T Consensus       113 GCYtc~~ks~~~k~E  127 (251)
T PHA02982        113 GCFTCEAKDAEGKEE  127 (251)
T ss_pred             CceEEEEecCCCchh
Confidence            999999998654433

>cd00098 IgC Immunoglobulin Constant domain

Probab=94.40  E-value=0.031  Score=34.91  Aligned_cols=44  Identities=18%  Similarity=0.286  Sum_probs=27.7

Q ss_pred             CCCCeeccCCCC--ceEEEECC------eEEEccCCCCCCEeEEEEEEeCCC
Q psy11549          1 MAGGIPLAHNTS--ARIILSNQ------SLVLQKVSRQSAGTYKCSAINTKG   44 (261)
Q Consensus         1 ~~ng~~l~~~~~--~~~~~~~~------~L~i~~~~~~D~G~Y~C~~~~~~~   44 (261)
                      +|||+++.....  ......++      .|.|.....+|.|.|+|.+.+...
T Consensus        35 ~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          35 LKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             EECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            478888853321  12222333      455666666799999999988754

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=94.29  E-value=0.16  Score=41.50  Aligned_cols=40  Identities=23%  Similarity=0.267  Sum_probs=0.0

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY   57 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~   57 (261)
                      .++.|.|.+++.+|+|.|+-...+..+......+.|.|..
T Consensus        87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~  126 (439)
T PF02480_consen   87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKG  126 (439)
T ss_dssp             ----------------------------------------
T ss_pred             cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence            4467999999999999999988877766545556777764

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PHA03283 envelope glycoprotein E; Provisional

Probab=94.19  E-value=2.7  Score=34.72  Aligned_cols=76  Identities=18%  Similarity=0.227  Sum_probs=48.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecC--------------------ceeEEEeeCCCcEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD--------------------RIVIVGASRSESVDI   79 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~--------------------~~~~~~~~~g~~~~l   79 (261)
                      +.|.|.+++.+++|.|+--.++..+ .....+.|+|+.++.....                    .........|++..+
T Consensus       134 ~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l  212 (542)
T PHA03283        134 SVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL  212 (542)
T ss_pred             CeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence            5799999999999999988887666 3344566777752211100                    011133567898888


Q ss_pred             EEEEeeCC----CCceeEEEE
Q psy11549         80 HCAVEADP----PARSFKWKF   96 (261)
Q Consensus        80 ~C~~~~~~----~~~~~~W~~   96 (261)
                      +-......    -...+.|++
T Consensus       213 si~l~s~~~d~~fs~~i~Wyy  233 (542)
T PHA03283        213 SVHLESDIGDPSFSATIDWYY  233 (542)
T ss_pred             eEEEeeccCCCCceEEEEEEE
Confidence            76655333    133788985

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=93.96  E-value=0.12  Score=29.78  Aligned_cols=34  Identities=29%  Similarity=0.461  Sum_probs=25.4

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY   57 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~   57 (261)
                      +.+|-+-+...+-.|.|.|.+.+.     +....|+|.+
T Consensus        32 ~~tlnLGs~~~DPRG~Y~C~~s~~-----~~~~~LQVyY   65 (69)
T cd07691          32 NTLLDLGSRINDPRGTYSCKESEP-----NKEKTLQVYY   65 (69)
T ss_pred             ccEEeccCcccCCCcceEecCccC-----CCcEEEEEEE
Confidence            568889999999999999988761     2334566653

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=93.90  E-value=0.14  Score=37.96  Aligned_cols=47  Identities=17%  Similarity=0.312  Sum_probs=32.4

Q ss_pred             eeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         91 SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        91 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+.|..++. ..+ ..+....+... ..|.+.+..++++|.|+|.+....
T Consensus        14 ~y~W~GP~g-~~l-~gn~~~nIT~T-G~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   14 TYLWTGPNG-KPL-SGNSYVNITET-GKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             ceEEECCCC-ccc-CCCCeEEEccC-ceEEeeccccccCCceEEEEEEEe
Confidence            799987653 333 23333333332 259999999999999999987643

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.45  E-value=1  Score=27.18  Aligned_cols=42  Identities=12%  Similarity=0.330  Sum_probs=26.9

Q ss_pred             eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ........+.....+..|+|.+.|.|....-......+.|.|
T Consensus        37 k~~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   37 KSLETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             cccccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            344445567888889999999999996433333233344433

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>KOG0613|consensus

Probab=92.49  E-value=0.92  Score=41.46  Aligned_cols=218  Identities=11%  Similarity=0.036  Sum_probs=115.9

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe-----e-----------ceee--cCceeEEEeeCCCcEEEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY-----A-----------PICK--SDRIVIVGASRSESVDIH   80 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~-----~-----------p~~~--~~~~~~~~~~~g~~~~l~   80 (261)
                      +.+..|.+....+.+.|+|...+..++.... ++..+..     .           +...  ......+.+..+..+.+.
T Consensus       277 ~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~-v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~  355 (1205)
T KOG0613|consen  277 GNTKTIQNDGPEPELSWTVADKRQGCQDRFK-VTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMP  355 (1205)
T ss_pred             CccccccccCCccccceeeecccCCccccee-eeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeec
Confidence            3467778888888889999887777665222 2222221     0           1000  011112556778889999


Q ss_pred             EEEeeCCCCceeEEEEcCCccccccCC-ceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC-
Q psy11549         81 CAVEADPPARSFKWKFNNSGETLDVGS-ERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ-  158 (261)
Q Consensus        81 C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~-  158 (261)
                      |...+...+..+.|+++.......... ..+.-......+.+..+...+.+.|.|.|.|..|........++.. ..+. 
T Consensus       356 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~-~~~gt  434 (1205)
T KOG0613|consen  356 TALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSE-EMPGT  434 (1205)
T ss_pred             ccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhccc-ccCCC
Confidence            999988887569999865432221111 1111122334678889999999999999999888655432222322 1111 


Q ss_pred             CCC----cceEEe--ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEE
Q psy11549        159 PPQ----NCSVRN--ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVIS  231 (261)
Q Consensus       159 ~p~----~~~v~~--~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~  231 (261)
                      .|.    ......  ...+.+.+.|........ ....-+++......... ......-..+.+.-..+.+++.|  ...
T Consensus       435 ~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~-~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~--~~a  511 (1205)
T KOG0613|consen  435 QPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMP-MTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQY--TRA  511 (1205)
T ss_pred             CCccccccccccccccCCcccccccCCCCcccc-ceeEeeccCCcccccccccccccchhhheeeccCCCccchh--hhh
Confidence            221    112222  234777778876333222 44444444433322222 22222223444444448888888  333


Q ss_pred             EEcCCCcCCc
Q psy11549        232 GVNAKGRSLP  241 (261)
Q Consensus       232 a~N~~G~~~~  241 (261)
                      ..-..|...+
T Consensus       512 ~~~~~~k~~~  521 (1205)
T KOG0613|consen  512 LRTLQGKPVP  521 (1205)
T ss_pred             hhccCCCCCC
Confidence            3333343333

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=91.88  E-value=1.1  Score=25.58  Aligned_cols=52  Identities=10%  Similarity=0.001  Sum_probs=29.6

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      +.|..|+|+|..  ..+ .   +.|.+.....       ...+..+.+.+.. +..|.|  .|.+.+.
T Consensus         5 isGTtVtlTCP~--~~~-~---i~W~~n~~~~-------~g~~~~~~~~~~~-e~~G~Y--~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPL--SGD-D---IKWKKNDQVS-------QGSDEKYLSLNHF-SSSGYY--HCTADNA   56 (65)
T ss_pred             EeccEEEEECCC--CCC-C---ceEEeCCccC-------CCCCceEEeeccC-CCCceE--EEEeCCC
Confidence            569999999985  211 1   3343433222       1122455555544 778899  8877543

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=89.98  E-value=2.9  Score=25.32  Aligned_cols=63  Identities=8%  Similarity=0.114  Sum_probs=31.2

Q ss_pred             EEEEeecCCCCCCCeEEEEEEEeCCccceeE--EEecCCCC------cEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        173 VHISCTPGYDGGLPQTFTLELYSASDLNLLV--NLTNLDTP------AFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       173 ~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      +.|.|.+  .+..|...+.|+++........  ........      .+.+.--.-.++..|  +|.+.|+.-.+
T Consensus         2 ~~LtC~a--~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~y--tC~v~h~~l~~   72 (83)
T cd05884           2 MQLTCKT--SGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAI--ICRVDHESLNA   72 (83)
T ss_pred             EEEEEEe--CCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEE--EEEEechhcCC
Confidence            5788997  5666655455555543321111  11111111      223332113345677  88898887644

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=88.82  E-value=0.52  Score=30.51  Aligned_cols=19  Identities=21%  Similarity=0.487  Sum_probs=17.8

Q ss_pred             eEEEccCCCCCCEeEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSA   39 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~   39 (261)
                      +|.|.+++.+|++.|.|..
T Consensus        75 ~L~l~~L~a~DTa~Y~Ca~   93 (115)
T cd05721          75 NFTLQNLRANQTDIYFCKI   93 (115)
T ss_pred             EEEEcCCCHHHCeEEEEEe
Confidence            8999999999999999964

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT

Probab=88.71  E-value=0.91  Score=37.45  Aligned_cols=31  Identities=10%  Similarity=0.148  Sum_probs=0.0

Q ss_pred             CCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        209 DTPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       209 ~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      ....+.|..-.|+++..|.|++.+.+.-|..
T Consensus       258 ~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~  288 (440)
T PF02010_consen  258 SSSNLVIDPGVLEPGSTYTFRLTVTDSSGSS  288 (440)
T ss_dssp             -------------------------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            4466777766689999999999999887764

The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=88.38  E-value=1.1  Score=26.42  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=16.4

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      .|.|.....++...|+|.+....
T Consensus        49 ~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407       49 YLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             EEEEccccCCCCCEEEEEEEEcC
Confidence            45555556678899999986553

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=87.92  E-value=1.4  Score=26.99  Aligned_cols=28  Identities=18%  Similarity=0.418  Sum_probs=18.6

Q ss_pred             CCeEEEEeecCCCCCCCeEEEEEEEeCCcc
Q psy11549        170 TSSVHISCTPGYDGGLPQTFTLELYSASDL  199 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~  199 (261)
                      +..+.+.|..  .++.|..-+.|+......
T Consensus        14 ~~~~~~~C~s--~~~~P~~~i~W~~~~~~~   41 (89)
T PF08205_consen   14 GEEVTLTCSS--SGGYPPPQITWYLDGGPV   41 (89)
T ss_dssp             TEEEEEEEEE--EEEBS-EEEEEEETTCEE
T ss_pred             ceEEEEEEEe--CCeECCeEEEEEECCCce
Confidence            5789999986  677776655565554443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>KOG4258|consensus

Probab=87.73  E-value=2.4  Score=37.38  Aligned_cols=84  Identities=13%  Similarity=0.042  Sum_probs=55.8

Q ss_pred             cCCeEEEEeecCC-CCCCCeEEEEEEEeCCccceeE---EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceee
Q psy11549        169 TTSSVHISCTPGY-DGGLPQTFTLELYSASDLNLLV---NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIW  244 (261)
Q Consensus       169 ~~~~~~l~c~~~~-~~~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~  244 (261)
                      ..+.+.|.|..+. ++|.-..|.+.|+....+....   ...........+.+  |.+ |.|+++++|..-+|.+.+...
T Consensus       841 ~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~--l~~-G~y~~~vratSlaGng~~t~~  917 (1025)
T KOG4258|consen  841 EMNSVILRWLEPKEPNGLILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKR--LNP-GNYSVRVRATSLAGNGSWTES  917 (1025)
T ss_pred             CcceEEEecCCCCCCCccEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEe--cCC-CcEEEEEEEEeeccCCCCcCC
Confidence            5778889998654 4455566999988655542111   11112234455555  555 789999999999999998888


Q ss_pred             eeeeecccccC
Q psy11549        245 DDFSMSGAHYA  255 (261)
Q Consensus       245 ~~~~~~~~~~~  255 (261)
                      +.+...+.+..
T Consensus       918 ~~~~v~~~~~~  928 (1025)
T KOG4258|consen  918 VIFYVSDEDGL  928 (1025)
T ss_pred             cceEEecCccc
Confidence            87776655443

>KOG4597|consensus

Probab=87.59  E-value=1.1  Score=36.35  Aligned_cols=80  Identities=11%  Similarity=0.059  Sum_probs=54.6

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEc---CCccccccCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFN---NSGETLDVGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~---~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      .+-++++..+.|-+.|.+.+ .+.|.+-   .....+. .+..+.  .......|.|-+....|+|.|+|.+.+..|...
T Consensus       207 ~vg~wetcS~tCg~~G~q~r-~V~c~qv~anr~~vv~~-~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~  284 (560)
T KOG4597|consen  207 FVGDWETCSSTCGVQGRQYR-VVTCEQVFANRENVVMR-PNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR  284 (560)
T ss_pred             hcccchhhcccccccCCcCc-eeeeehhhccccceeec-CccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence            36678899999999999988 7999742   1111111 111111  122344789999999999999999999988877


Q ss_pred             eeEEEEE
Q psy11549        145 TPCLYQV  151 (261)
Q Consensus       145 ~~~~~~v  151 (261)
                      ....+.+
T Consensus       285 rdv~c~s  291 (560)
T KOG4597|consen  285 RDVPCSS  291 (560)
T ss_pred             ccceeee
Confidence            6444433

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=86.76  E-value=5.2  Score=31.47  Aligned_cols=22  Identities=18%  Similarity=0.539  Sum_probs=18.4

Q ss_pred             cEEEEEEEeeCCC-CceeEEEEc
Q psy11549         76 SVDIHCAVEADPP-ARSFKWKFN   97 (261)
Q Consensus        76 ~~~l~C~~~~~~~-~~~~~W~~~   97 (261)
                      .++|.|.+.+.-| .+.+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            5799999999865 557899887

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=86.53  E-value=0.47  Score=31.48  Aligned_cols=34  Identities=24%  Similarity=0.471  Sum_probs=20.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .+|.+.....- .|+|+|.+.....+. ...+.|.+
T Consensus        86 aSL~~~~~~a~-~GnYTCeVt~~~~eg-e~~i~Lk~  119 (130)
T PF08204_consen   86 ASLKMDKSDAV-EGNYTCEVTELSREG-ETTIELKY  119 (130)
T ss_dssp             --EEEEHHHHH--EEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEEcchhcc-ccceEEEEEecCCCc-eEEEEEEE
Confidence            45777776555 999999997776544 44444444

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=86.46  E-value=1.9  Score=34.34  Aligned_cols=40  Identities=20%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceee
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK   62 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~   62 (261)
                      ++.+.+++.+|.|.|+|...-...+....  .|.|...|.+.
T Consensus        82 sf~~~Nvs~sdEGrYrCIFYLn~~EtyrH--~I~vrVmPKId  121 (500)
T PHA02914         82 SFIEENIGEHEDGDFKCIFYLGDNESHKH--EILVRKAPKID  121 (500)
T ss_pred             EEEecCcccccCCcEEEEEEeCCceeEEE--EEEEEEcccee
Confidence            68899999999999999987766565444  44555555544

>PHA03269 envelope glycoprotein C; Provisional

Probab=85.33  E-value=20  Score=29.74  Aligned_cols=77  Identities=9%  Similarity=-0.028  Sum_probs=48.1

Q ss_pred             eeEEEEecCCCCcCeEEEEEEEcC-CceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE--EEEE
Q psy11549        116 GSMLRYTPVTELDYGTLSCAAQNA-IGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT--FTLE  192 (261)
Q Consensus       116 ~~~l~i~~~~~~d~g~y~C~~~~~-~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~--~~~~  192 (261)
                      ...|.|..+...+.|.|+-.+.+. .+.......++|....+|..-..-. ....|+...-.|.+  .+-+|..  ...|
T Consensus       288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~-PVL~Ge~YkAtC~v--A~YYPp~SvrlrW  364 (566)
T PHA03269        288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD-PVLLGNPYAAYCKV--NKYYPPHSVIVKW  364 (566)
T ss_pred             ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC-ccccCCCceEEEEe--eeecCCCceEEEE
Confidence            457999999999999998776532 2333444466676666664111000 11459999999997  5555643  4455


Q ss_pred             EEe
Q psy11549        193 LYS  195 (261)
Q Consensus       193 ~~~  195 (261)
                      +.+
T Consensus       365 f~n  367 (566)
T PHA03269        365 TSN  367 (566)
T ss_pred             EeC
Confidence            555

>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology

Probab=85.03  E-value=7.4  Score=24.46  Aligned_cols=78  Identities=10%  Similarity=0.054  Sum_probs=48.0

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--EEecCC--CCcEEEcCCCCC--CccEEEEEEEEEcCCCcCCc
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--NLTNLD--TPAFTLEDLGLD--GTVLMRVVISGVNAKGRSLP  241 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~i~~~~l~--~~~~Y~~~~~a~N~~G~~~~  241 (261)
                      ...+.+..+|.++........|.+.|+.........  ......  ...+.+......  ....|.+.+.+.|..|.-.+
T Consensus        10 ~~~~~m~CtW~~g~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~ss~~~~i~~   89 (99)
T PF09240_consen   10 YNLEYMNCTWEPGKEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNGSSSAGSIRS   89 (99)
T ss_dssp             ETTTEEEEEEECCTTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEEEETTEEEEC
T ss_pred             ECCEEEEEEECCCCCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEeccCCCccCC
Confidence            347888999998555555567888887765333222  332222  345566663342  23489999999999987665


Q ss_pred             eeee
Q psy11549        242 VIWD  245 (261)
Q Consensus       242 s~~~  245 (261)
                      ....
T Consensus        90 ~~~~   93 (99)
T PF09240_consen   90 SDQT   93 (99)
T ss_dssp             EEEE
T ss_pred             cceE
Confidence            5443

They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....

>PHA03286 envelope glycoprotein E; Provisional

Probab=84.93  E-value=13  Score=30.41  Aligned_cols=77  Identities=19%  Similarity=0.180  Sum_probs=49.6

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee-----ceee--cCc-----------eeEEEeeCCCcEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA-----PICK--SDR-----------IVIVGASRSESVDIHC   81 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~-----p~~~--~~~-----------~~~~~~~~g~~~~l~C   81 (261)
                      +.|.|.+++.+++|.|+--.+|..+......+.|.|...     |...  ..+           ........|++..++-
T Consensus       127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv  206 (492)
T PHA03286        127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV  206 (492)
T ss_pred             CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence            579999999999999999888887776556677777421     2111  000           0113355788887776


Q ss_pred             EEee----CCCCceeEEEE
Q psy11549         82 AVEA----DPPARSFKWKF   96 (261)
Q Consensus        82 ~~~~----~~~~~~~~W~~   96 (261)
                      ....    .+-...+.|++
T Consensus       207 ~l~~~~~d~~Fsl~i~W~y  225 (492)
T PHA03286        207 TAHLTNWAGAFSLEFRVLF  225 (492)
T ss_pred             EEeecccCCCceEEEEEEE
Confidence            5541    12233788985

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=84.85  E-value=1.5  Score=27.38  Aligned_cols=43  Identities=14%  Similarity=0.290  Sum_probs=25.0

Q ss_pred             CCCCeeccCCC-CceEEEECCeEEEcc---CCCCCCEeEEEEEEeCC
Q psy11549          1 MAGGIPLAHNT-SARIILSNQSLVLQK---VSRQSAGTYKCSAINTK   43 (261)
Q Consensus         1 ~~ng~~l~~~~-~~~~~~~~~~L~i~~---~~~~D~G~Y~C~~~~~~   43 (261)
                      +|||+++.+.. ......+++++.+..   +..++...|+|.+....
T Consensus        37 ~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          37 LKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             EECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            47898886211 112223445544432   35678888999987653

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=84.47  E-value=3.4  Score=26.71  Aligned_cols=42  Identities=7%  Similarity=0.154  Sum_probs=22.1

Q ss_pred             CCCCeeccCCCCceEEEEC-C------eEEEccCCCCCCE-eEEEEEEeCC
Q psy11549          1 MAGGIPLAHNTSARIILSN-Q------SLVLQKVSRQSAG-TYKCSAINTK   43 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~-~------~L~i~~~~~~D~G-~Y~C~~~~~~   43 (261)
                      +|||+++...........+ +      +|.+.. ...|.| .|+|.+....
T Consensus        43 ~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          43 LKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             EECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            5899998532111111122 1      344443 445555 4999997764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PHA03281 envelope glycoprotein E; Provisional

Probab=84.40  E-value=24  Score=29.78  Aligned_cols=79  Identities=13%  Similarity=0.171  Sum_probs=47.6

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece--eecCc--------------eeEEEeeCCCcEEEEE
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI--CKSDR--------------IVIVGASRSESVDIHC   81 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~--~~~~~--------------~~~~~~~~g~~~~l~C   81 (261)
                      ..+.|.|.+++.+++|.|+--.+...|......+.|.|+..+.  +..+.              ........|++..+.-
T Consensus       296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v  375 (642)
T PHA03281        296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAM  375 (642)
T ss_pred             cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEE
Confidence            3468999999999999999877766565433356677764321  11110              0012345688777665


Q ss_pred             EEeeC----CCCceeEEEE
Q psy11549         82 AVEAD----PPARSFKWKF   96 (261)
Q Consensus        82 ~~~~~----~~~~~~~W~~   96 (261)
                      .....    +-...+.|++
T Consensus       376 ~L~s~ihD~pFsleI~Wyy  394 (642)
T PHA03281        376 HLQYKIHDAPFDLLLEWLY  394 (642)
T ss_pred             EEeeeccCCCceeEEEEEE
Confidence            54432    2234788985

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=84.25  E-value=5.7  Score=22.54  Aligned_cols=38  Identities=5%  Similarity=-0.055  Sum_probs=23.2

Q ss_pred             eEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549        202 LVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       202 ~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      .|.........+.+.+  | +.|.|.|.|.|.+..|.....
T Consensus        20 ~W~~~~~~~~~~~~~~--L-~~G~Y~l~V~a~~~~~~~~~~   57 (66)
T PF07495_consen   20 EWITLGSYSNSISYTN--L-PPGKYTLEVRAKDNNGKWSSD   57 (66)
T ss_dssp             SEEEESSTS-EEEEES-----SEEEEEEEEEEETTS-B-SS
T ss_pred             eEEECCCCcEEEEEEe--C-CCEEEEEEEEEECCCCCcCcc
Confidence            3433333323788878  6 558999999999999855443

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=83.76  E-value=7.4  Score=23.46  Aligned_cols=20  Identities=30%  Similarity=0.386  Sum_probs=17.0

Q ss_pred             EEEEecCCCCcCeEEEEEEE
Q psy11549        118 MLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus       118 ~l~i~~~~~~d~g~y~C~~~  137 (261)
                      ..........|+|.+.|.|.
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEc
Confidence            46677888899999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria

Probab=83.55  E-value=0.77  Score=26.78  Aligned_cols=18  Identities=17%  Similarity=0.056  Sum_probs=14.8

Q ss_pred             cCCCCCCccEEEEEEEEE
Q psy11549        216 EDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       216 ~~~~l~~~~~Y~~~~~a~  233 (261)
                      .+-+|+++|+|.|+++|.
T Consensus        63 ~DY~LEpGgdY~Ftirak   80 (80)
T PF11344_consen   63 SDYQLEPGGDYSFTIRAK   80 (80)
T ss_pred             cceeccCCCceEEEEecC
Confidence            346699999999999873

>PHA03282 envelope glycoprotein E; Provisional

Probab=82.63  E-value=3.5  Score=33.62  Aligned_cols=43  Identities=23%  Similarity=0.328  Sum_probs=30.6

Q ss_pred             eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcce-eeeEEEEEE
Q psy11549         14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRVK   56 (261)
Q Consensus        14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-s~~~~l~V~   56 (261)
                      +....|++|.|.+++.+|+|.|+-.+........ ...+.|.|.
T Consensus       118 rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~  161 (540)
T PHA03282        118 RVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG  161 (540)
T ss_pred             ceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence            4556688999999999999999998755544432 333555554

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=81.98  E-value=10  Score=23.75  Aligned_cols=73  Identities=10%  Similarity=-0.057  Sum_probs=36.0

Q ss_pred             cCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCC-----cEEEcCCCCCCccEEEEEEEEEcCCCcCCcee
Q psy11549        169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTP-----AFTLEDLGLDGTVLMRVVISGVNAKGRSLPVI  243 (261)
Q Consensus       169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~  243 (261)
                      ....+.+.|..  .++.|..-+.|+.................+     .|.+.-..-.++..+  +|.+.|..-......
T Consensus        14 ~~~~~va~C~s--~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~l--tC~v~h~al~~~~~~   89 (95)
T cd07703          14 TIPVPVAKCVS--ANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEV--TCKVEHETLQEPQLL   89 (95)
T ss_pred             CCccEEEEEEc--CCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEE--EEEEeCcccCCCeEE
Confidence            34567889987  667776655555542211111111111111     222222112344566  999999876554444


Q ss_pred             ee
Q psy11549        244 WD  245 (261)
Q Consensus       244 ~~  245 (261)
                      .+
T Consensus        90 ~~   91 (95)
T cd07703          90 PV   91 (95)
T ss_pred             EE
Confidence            43

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>KOG4802|consensus

Probab=81.68  E-value=3.2  Score=33.22  Aligned_cols=43  Identities=19%  Similarity=0.074  Sum_probs=29.1

Q ss_pred             CcEEEcCCCCCCccEEEEEEEEEcCCCc---CCceeeee-eeecccccC
Q psy11549        211 PAFTLEDLGLDGTVLMRVVISGVNAKGR---SLPVIWDD-FSMSGAHYA  255 (261)
Q Consensus       211 ~~~~i~~~~l~~~~~Y~~~~~a~N~~G~---~~~s~~~~-~~~~~~~~~  255 (261)
                      ..+...+  +.|+..|+|++.|.|..|.   +++|..-. ...+.+++.
T Consensus       209 ~~~~~t~--~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~  255 (516)
T KOG4802|consen  209 NTYIFTD--MRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPS  255 (516)
T ss_pred             ceeeeee--cCcceeEEEEEeeeecccccccCCCCCCCCCCCCCCCCcC
Confidence            3666777  9999999999999999874   44444433 334444443

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=81.61  E-value=10  Score=23.46  Aligned_cols=17  Identities=29%  Similarity=0.610  Sum_probs=12.6

Q ss_pred             CCeEEEEeecCCCCCCCeE
Q psy11549        170 TSSVHISCTPGYDGGLPQT  188 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~  188 (261)
                      ++.++|.|.+  .+..|..
T Consensus        14 ~~~~~L~C~a--~gF~P~~   30 (93)
T cd07698          14 DGSLTLSCHA--TGFYPRD   30 (93)
T ss_pred             CCcEEEEEEE--EEEeCCC
Confidence            5679999998  5556654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PHA02982 hypothetical protein; Provisional

Probab=80.20  E-value=20  Score=26.08  Aligned_cols=72  Identities=14%  Similarity=0.285  Sum_probs=44.6

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcE-EEEEEEeeCCCCceeEEEEc
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESV-DIHCAVEADPPARSFKWKFN   97 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~-~l~C~~~~~~~~~~~~W~~~   97 (261)
                      .++|+|.++..+..|=|+|.+....+......-=|.|+..      . ....+.++.+. .+.|.+-....+. ..|.-+
T Consensus        99 ~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~------~-V~~~W~e~nNeT~V~CyVgS~~~dv-p~W~V~  170 (251)
T PHA02982         99 SSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKE------D-ILYVVEEHNNETIITCFVGSKHGDV-PRFIVA  170 (251)
T ss_pred             ceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecc------e-EEEEEEecCCeEEEEEEEEeccCCC-ccEEEe
Confidence            4699999999999999999998877665332333444211      0 11223344444 4678876655542 378665


Q ss_pred             C
Q psy11549         98 N   98 (261)
Q Consensus        98 ~   98 (261)
                      |
T Consensus       171 G  171 (251)
T PHA02982        171 G  171 (251)
T ss_pred             e
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	261
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		4e-07
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		6e-07
1e07_A	642	Model Of Human Carcinoembryonic Antigen By Homology		3e-04

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 52.0 bits (123), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 10/221 (4%)
Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
           SL ++ V    +G Y C A +  G      + L ++YAP   S++  I  +     ++I 
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQ-TIYYSWEGNPINIS 121
Query: 81  CAVEADPPARSFKWKFNN-SGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQNA 139
           C V+++PPA S  W+ +       +             +L   P ++ D+G  +C A N 
Sbjct: 122 CDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 140 IGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT-PGYDGGLP-QTFTLELYSAS 197
           IGT+     Y + LA  P  P    +   + ++  +S   P   GG+P   + +++   +
Sbjct: 181 IGTRFQE--YILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVA 238
Query: 198 XXXXXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGR 238
                            L +L  + T  +RV  + VN KG+
Sbjct: 239 SEIWKIVRSHGVQTMVVLNNLEPNTTYEIRV--AAVNGKGQ 277

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 92/221 (41%), Gaps = 10/221 (4%)
Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
           SL ++ V    +G Y C A +  G      + L ++YAP   S++  I  +     ++I 
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQ-TIYYSWEGNPINIS 121
Query: 81  CAVEADPPARSFKWKFNN-SGETLDVXXXXXXXXXXXXMLRYTPVTELDYGTLSCAAQNA 139
           C V+++PPA S  W+ +       +             +L   P ++ D+G  +C A N 
Sbjct: 122 CDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 140 IGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT-PGYDGGLP-QTFTLELYSAS 197
           IGT+     Y + LA  P  P    +   + ++  +S   P   GG+P   + +++   +
Sbjct: 181 IGTRFQE--YILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVA 238
Query: 198 XXXXXXXXXXXXXPAFTLEDLGLDGTVLMRVVISGVNAKGR 238
                            L +L  + T  +RV  + VN KG+
Sbjct: 239 SEIWKIVRSHGVQTMVVLNNLEPNTTYEIRV--AAVNGKGQ 277

>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology Modelling And Curve-Fitting To Experimental Solution Scattering Data Length = 642

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 18/173 (10%)
Query: 12  SARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIV 69
           S R+ LSN  ++L L  V+R    +YKC   N      S+ + L V Y P   +   +  
Sbjct: 154 SPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNT 213
Query: 70  GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVXXXXXXXXXXXXMLRYTPVTELDY 129
                E++++ C   ++PPA+ + W  N + +                 L    +T  + 
Sbjct: 214 SYRSGENLNLSCHAASNPPAQ-YSWFVNGTFQ------------QSTQELFIPNITVNNS 260
Query: 130 GTLSCAAQNA-IGTQVTPCLYQVVLAGKPQP--PQNCSVRNETTSSVHISCTP 179
           G+ +C A N+  G   T      V A  P+P    N S   E   +V ++C P
Sbjct: 261 GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	5e-30
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-05
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-05
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-23
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	3e-06
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-22
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-20
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	9e-17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-12
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-19
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-18
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-16
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-16
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-15
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-18
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-16
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-14
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-06
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	3e-18
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-18
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-12
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	7e-08
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	8e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	7e-18
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	6e-08
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-05
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	8e-18
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-14
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	4e-04
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-17
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-17
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	3e-05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-05
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-17
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-10
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-17
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-07
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-17
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-17
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-07
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	4e-17
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-11
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-06
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-17
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-15
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	7e-04
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-14
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	8e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-06
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-17
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	3e-04
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	5e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-12
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-16
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-15
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	3e-16
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	8e-08
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-16
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-06
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-16
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	5e-05
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-16
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	9e-06
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-04
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	1e-15
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-05
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-04
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-15
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	5e-15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	8e-12
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-04
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-15
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	4e-15
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	3e-15
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-06
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-04
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	5e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-13
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-06
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	8e-15
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-15
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	2e-14
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-14
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-06
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	1e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-14
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-06
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-05
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	4e-04
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	5e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	7e-07
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	9e-07
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-14
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-13
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-14
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	6e-14
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	4e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-13
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-12
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-11
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	9e-07
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-04
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-13
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	5e-11
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	2e-13
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-11
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-13
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	9e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-13
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	5e-05
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	2e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-05
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-05
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	8e-13
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-12
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-09
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	7e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-12
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-12
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-04
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-12
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-04
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-12
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-10
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-12
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-08
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	4e-12
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	2e-06
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-12
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-05
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	5e-12
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-11
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-10
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-11
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-04
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	3e-04
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-11
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-11
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	7e-07
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-11
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-05
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	4e-11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-06
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	8e-05
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-10
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	1e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	9e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-10
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	2e-09
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-05
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	4e-09
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-08
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-05
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	4e-08
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	2e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	6e-08
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	6e-08
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	7e-08
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	7e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	7e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-07
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	4e-07
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	7e-05
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	8e-07
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-05
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-06
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-06
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	3e-04
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	2e-06
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-06
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	2e-06
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-06
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-06
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	7e-06
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	4e-06
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	4e-06
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	5e-06
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	4e-06
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	6e-06
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	8e-06
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-05
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	9e-06
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	9e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	1e-05
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	1e-05
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-05
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-05
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	3e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-04
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	3e-05
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	3e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-05
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	3e-05
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	4e-05
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	9e-05
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	4e-05
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	5e-05
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-05
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	6e-05
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	8e-05
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	8e-05
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	4e-04
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-04
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	1e-04
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	1e-04
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	1e-04
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-04
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	9e-04
1x5y_A	111	Myosin binding protein C, fast-type; fast MYBP-C,	2e-04
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	2e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-04
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	2e-04
3e0g_A	483	Leukemia inhibitory factor receptor; IG domain, cy	2e-04
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-04
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	5e-04
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-04
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-04
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-04
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	6e-04
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	4e-04
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
2crm_A	120	Fibronectin type-III domain containing protein 3A;	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	7e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	7e-04
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-04
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	8e-04

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  114 bits (288), Expect = 5e-30
 Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 20/247 (8%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
           G   L      +    + SL ++ V    +G Y C A +  G    + + L ++YAP   
Sbjct: 46  GDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFI 104

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE---RFSSGSRG 116
             ++      G      ++I C V+++PPA S  W+ +     L   +    +  S  R 
Sbjct: 105 SNQTIYYSWEG----NPINISCDVKSNPPA-SIHWRRD--KLVLPAKNTTNLKTYSTGRK 157

Query: 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
            +L   P ++ D+G  +C A N IGT+       + LA  P  P    +   + ++  +S
Sbjct: 158 MILEIAPTSDNDFGRYNCTATNHIGTRFQEY--ILALADVPSSPYGVKIIELSQTTAKVS 215

Query: 177 CT-PGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVN 234
              P   GG+P   + +++   +     +  ++       L +L  + T  +RV    VN
Sbjct: 216 FNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVA--AVN 273

Query: 235 AKGRSLP 241
            KG+   
Sbjct: 274 GKGQGDY 280

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 22/124 (17%), Positives = 31/124 (25%), Gaps = 18/124 (14%)

Query: 64  DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE------RFSSGSRGS 117
           +            V + C  E +P      WK    G T   G +              S
Sbjct: 9   NETTYEN----GQVTLVCDAEGEPIP-EITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63

Query: 118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVH 174
            L    V   D G   C A + IG         + +   P                  ++
Sbjct: 64  SLHIKDVKLSDSGRYDCEAASRIGGHQKSM--YLDIEYAPKFISNQTIYYSWEGNP--IN 119

Query: 175 ISCT 178
           ISC 
Sbjct: 120 ISCD 123

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 43.6 bits (103), Expect = 3e-05
 Identities = 42/266 (15%), Positives = 73/266 (27%), Gaps = 42/266 (15%)

Query: 3   GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
             + L    +  +   +      L +   S    G Y C+A N  G        L +   
Sbjct: 137 DKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQE-YILALADV 195

Query: 59  PICKSDRIVIVGASRSESVDIHCAVEADPPARS-----------FKWKFNNSGETLDVGS 107
           P   S   V +      +  +      + P               K   +   + +    
Sbjct: 196 P--SSPYGVKIIELSQTTAKVSF----NKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH- 248

Query: 108 ERFSSGSRGSMLRYTPVTEL----DYGTLSCAAQNAIGT-QVTPCLYQVVLAGKPQPPQN 162
                   G       +  L     Y  +  AA N  G    +       L  +   P +
Sbjct: 249 --------GVQTMVV-LNNLEPNTTY-EIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS 298

Query: 163 CSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSA-SDLNLLVNLTNLDTPAFTLEDLGL 220
              +  +  S  +S T   DGG P   + ++  S   +   L      +     LE L  
Sbjct: 299 IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHL-Q 357

Query: 221 DGTVLMRVVISGVNAKGRSLPVIWDD 246
                  V I+  N  G S P +++ 
Sbjct: 358 WTMG-YEVQITAANRLGYSEPTVYEF 382

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 96.4 bits (240), Expect = 1e-23
 Identities = 47/231 (20%), Positives = 82/231 (35%), Gaps = 17/231 (7%)

Query: 19  NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVI----VGASRS 74
              L++  V+   A  Y+  A N  G  +     L V+        + +     V A R 
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSG-TASLEVEVPAKIHLPKTLEGMGAVHALRG 119

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGS--ERFSSGSRGSMLRYTPVTELDYGTL 132
           E V I       P      W+     + +D     +   + S  S++    V   D G  
Sbjct: 120 EVVSIKIPFSGKPDP-VITWQKG--QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176

Query: 133 SCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLP-QTFT 190
              A+N  G        ++ +A  P PP+   V + +  SV+++   P  DGG     + 
Sbjct: 177 VVCAKNRFGI--DQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYI 234

Query: 191 LELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
           +E   A+     + +       +T+ +L    +   RV+    N  G S P
Sbjct: 235 VE-KCATTAERWLRVGQARETRYTVINLFGKTSYQFRVI--AENKFGLSKP 282

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 21/121 (17%), Positives = 29/121 (23%), Gaps = 10/121 (8%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG-SMLRY 121
            +  V        +  + C V   P     KW         D    R      G   L  
Sbjct: 12  RNLNVRYQ----SNATLVCKVTGHPKP-IVKWYRQGKEIIADGLKYRIQEFKGGYHQLII 66

Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISC 177
             VT+ D       A N  G+       +V +  K   P+               V I  
Sbjct: 67  ASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKI 126

Query: 178 T 178
            
Sbjct: 127 P 127

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 89.9 bits (223), Expect = 5e-22
 Identities = 46/218 (21%), Positives = 75/218 (34%), Gaps = 26/218 (11%)

Query: 33  GTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSF 92
            TY  ++            +    YAP  +    V         V+I C V A P A + 
Sbjct: 1   ATYAAASSALVP-------RGSHMYAPKLQGPVAVYTWEG--NQVNITCEVFAYPSA-TI 50

Query: 93  KWKFNNSGETLDVGSE---RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149
            W  +  G+ L   +    +  +    S L  TP +E D+G  +C A N IG +      
Sbjct: 51  SWFRD--GQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEF-- 106

Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLP-QTFTLELYSASDLNLLVNLTN 207
            +V A  P  P    V    +S+  +    P   GG+P   +  E  +  +        +
Sbjct: 107 ILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD 165

Query: 208 L----DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
                     T+  L  + T  +R+    +N KG    
Sbjct: 166 AKEASMEGIVTIVGLKPETTYAVRLA--ALNGKGLGEI 201

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 90.4 bits (224), Expect = 1e-20
 Identities = 39/179 (21%), Positives = 66/179 (36%), Gaps = 9/179 (5%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
               L  N   ++   N +L+++ V R S   TY C A N +G +    L+++V   P  
Sbjct: 563 DNRALPINRKQKV-FPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRI 621

Query: 62  KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
                    A   + + +HC+V       +  W  +    + D+G      G RGS+L  
Sbjct: 622 IPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTI 681

Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISC 177
             V     G  +C A+N  G Q       + +   P     P + +      S   + C
Sbjct: 682 EAVEASHAGNFTCHARNLAGHQQFTT--PLNVYVPPRWILEPTDKAF--AQGSDAKVEC 736

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 78.8 bits (194), Expect = 9e-17
 Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 20/175 (11%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAP----ICKSDRIVI 68
            I  S   L ++ V ++  G Y+C   N +  A ++ +LKL  ++ P        +  + 
Sbjct: 383 AIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETME 442

Query: 69  VGASRSESVDIHCAVEADPPARSFKWKFNN----SGETLDVGSERFSSGSRGSMLRYTPV 124
            G     SV + C    +P      W+ +     + +   VG     +G   S L  T V
Sbjct: 443 PG----PSVFLKCVAGGNPTP-EISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSV 497

Query: 125 TELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRNETTSSVHISC 177
              D G   C A++ +G        ++ + G P     +  ++      ++ ++C
Sbjct: 498 HANDGGLYKCIAKSKVGVAEHSA--KLNVYGLPYIRQMEKKAIV--AGETLIVTC 548

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 78.1 bits (192), Expect = 1e-16
 Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 13/159 (8%)

Query: 9   HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK---SDR 65
             T++R+      L ++ V    AG + C A N  G        L V   P      +D+
Sbjct: 666 GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF-TTPLNVYVPPRWILEPTDK 724

Query: 66  IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR--GSMLRYTP 123
               G        + C  +  P      WK        +    + S   R     L    
Sbjct: 725 AFAQG----SDAKVECKADGFPKP-QVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDN 779

Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
           + + + G   C A N IG+ ++  +   V A       +
Sbjct: 780 IQKTNEGYYLCEAINGIGSGLSAVIMISVQA--HHHHHH 816

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 76.1 bits (187), Expect = 7e-16
 Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 17/175 (9%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKS--DRIVIVGASRSESVD 78
            L +  V     G YKC A +  G A  +  KL V   P  +    + ++ G    E++ 
Sbjct: 491 YLNITSVHANDGGLYKCIAKSKVGVAEHS-AKLNVYGLPYIRQMEKKAIVAG----ETLI 545

Query: 79  IHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTEL-DYGTLSCAAQ 137
           + C V   P   S  W+ +     L +   +      G+ L    V    D  T +C A+
Sbjct: 546 VTCPVAGYPID-SIVWERD--NRALPINR-KQKVFPNGT-LIIENVERNSDQATYTCVAK 600

Query: 138 NAIGTQVTPCLY-QVVLAGKPQPPQNCSVRNETTSSVHISCTP-GYDGGLPQTFT 190
           N  G      L  QV++  +  P        +    + + C+  G D  LP    
Sbjct: 601 NQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD--LPLNID 653

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 66.1 bits (161), Expect = 1e-12
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 26/175 (14%)

Query: 12  SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIVI 68
           + R+   + +L+++    + +G Y C   N+ G  +  +  L V       I    + V 
Sbjct: 298 NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV-ETVLTVTAPLSAKIDPPTQTVD 356

Query: 69  VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
            G          C    +P   +  W  +  G+ +             S+LR   V + D
Sbjct: 357 FG----RPAVFTCQYTGNPIK-TVSWMKD--GKAIG---------HSESVLRIESVKKED 400

Query: 129 YGTLSCAAQNAIGTQVTPCLYQVVLAGKP----QPPQNCSVRNETTSSVHISCTP 179
            G   C  +N   +       ++     P    Q  Q  ++      SV + C  
Sbjct: 401 KGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETME--PGPSVFLKCVA 453

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 64.2 bits (156), Expect = 7e-12
 Identities = 27/176 (15%), Positives = 49/176 (27%), Gaps = 16/176 (9%)

Query: 22  LVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
           + +     +    +   A+   G  T         +  P+   +    +  S S   +I 
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 81  CAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDY------GTLSC 134
           C    +P      W  ++ G  +          S G  L + P    DY         +C
Sbjct: 61  CKASGNPMP-EIIWIRSD-GTAVGDVPGLRQISSDGK-LVFPPFRAEDYRQEVHAQVYAC 117

Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT---SSVHISCTPGYDGGLPQ 187
            A+N  G+ ++  +  V             V  E     +S  I C          
Sbjct: 118 LARNQFGSIISRDV-HVRAVVAQYYEA--DVNKEHVIRGNSAVIKCLIPSFVADFV 170

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 63.8 bits (155), Expect = 8e-12
 Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 19/155 (12%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQS------AGTYKCSAINTKGEATSNQLKLRVK 56
            G  +      R I S+  LV      +       A  Y C A N  G   S  + +R  
Sbjct: 77  DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV 136

Query: 57  YAPICK---SDRIVIVGASRSESVDIHCAVEADP--PARSFKWKFNNS--GETLDVGSER 109
            A   +   +   VI G     S  I C + +          W  +             +
Sbjct: 137 VAQYYEADVNKEHVIRG----NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 192

Query: 110 FSSGSRGSMLRYTPVTELD-YGTLSCAAQNAIGTQ 143
           +     G  L    V   D Y +  C  ++ +  +
Sbjct: 193 YLVLPSGE-LHIREVGPEDGYKSYQCRTKHRLTGE 226

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 58.0 bits (140), Expect = 8e-10
 Identities = 25/188 (13%), Positives = 50/188 (26%), Gaps = 19/188 (10%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQ-SAGTYKCSAINTKGEATSNQLKLRV-------- 55
            P A      ++L +  L +++V  +    +Y+C   +     T                
Sbjct: 184 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 243

Query: 56  -KYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
                +    +  +   S S ++ + C  +  P    F+W     G T            
Sbjct: 244 SAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVP-VFRWYKFIEGTTRKQAVVLNDRVK 302

Query: 115 -RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETT 170
                L        D G   C   N++G +       + +         P   +V     
Sbjct: 303 QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET--VLTVTAPLSAKIDPPTQTVDFG-- 358

Query: 171 SSVHISCT 178
                +C 
Sbjct: 359 RPAVFTCQ 366

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 86.2 bits (213), Expect = 2e-19
 Identities = 29/143 (20%), Positives = 51/143 (35%), Gaps = 21/143 (14%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---- 59
           G  L  +   ++   N++L L  V+R  A  Y C   N+     S+ + L V Y P    
Sbjct: 504 GQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPI 563

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           I   D   + G     ++++ C   ++P    + W+ N                    +L
Sbjct: 564 ISPPDSSYLSG----ANLNLSCHSASNPSP-QYSWRING------------IPQQHTQVL 606

Query: 120 RYTPVTELDYGTLSCAAQNAIGT 142
               +T  + GT +C   N    
Sbjct: 607 FIAKITPNNNGTYACFVSNLATG 629

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 83.9 bits (207), Expect = 1e-18
 Identities = 37/184 (20%), Positives = 67/184 (36%), Gaps = 24/184 (13%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---- 59
              L  +   ++   N++L L  V+R   G Y+C   N      S+ + L V Y P    
Sbjct: 326 NQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPT 385

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           I  S      G     ++ + C   ++PPA  + W  +  G       E          L
Sbjct: 386 ISPSYTYYRPG----VNLSLSCHAASNPPA-QYSWLID--GNIQQHTQE----------L 428

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT---SSVHIS 176
             + +TE + G  +C A N+        +  + ++ +   P   S  ++      +V  +
Sbjct: 429 FISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFT 488

Query: 177 CTPG 180
           C P 
Sbjct: 489 CEPE 492

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 77.7 bits (191), Expect = 2e-16
 Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPI-----CKSDRIV 67
            I    Q L +  ++ +++G Y C A N+    +      + V            + + V
Sbjct: 420 NIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPV 479

Query: 68  IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTEL 127
                  ++V   C  EA     ++ W  N     +   S R    +    L    VT  
Sbjct: 480 EDK----DAVAFTCEPEAQNT--TYLWWVNGQSLPV---SPRLQLSNGNRTLTLFNVTRN 530

Query: 128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISCT 178
           D     C  QN++    +  +   VL G       P + S    + +++++SC 
Sbjct: 531 DARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYL--SGANLNLSCH 582

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 76.5 bits (188), Expect = 4e-16
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 28/186 (15%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---- 59
              L  +   ++   N++L L  V+R    +YKC   N      S+ + L V Y P    
Sbjct: 148 NQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPT 207

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           I   +     G    E++++ C   ++PPA  + W  N        G+ + S+      L
Sbjct: 208 ISPLNTSYRSG----ENLNLSCHAASNPPA-QYSWFVN--------GTFQQSTQE----L 250

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP-----QPPQNCSVRNETTSSVH 174
               +T  + G+ +C A N+        +  + +  +P         +  V +E    V 
Sbjct: 251 FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDA--VA 308

Query: 175 ISCTPG 180
           ++C P 
Sbjct: 309 LTCEPE 314

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 74.2 bits (182), Expect = 2e-15
 Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 15/182 (8%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA---PI 60
             P    +   II  N SL++Q + +   G Y    I +         + RV      P 
Sbjct: 55  ATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPS 114

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
             S+    V     ++V   C  E      ++ W  N   ++L V      S    + L 
Sbjct: 115 ISSNNSKPV--EDKDAVAFTCEPETQDA--TYLWWVN--NQSLPVSPRLQLSNGNRT-LT 167

Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP---PQNCSVRNETTSSVHISC 177
              VT  D  +  C  QN +  + +  +   VL G   P   P N S R+    ++++SC
Sbjct: 168 LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSG--ENLNLSC 225

Query: 178 TP 179
             
Sbjct: 226 HA 227

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 83.0 bits (205), Expect = 2e-18
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 16/181 (8%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD 64
           +      S  ++L + +L + ++    +G Y+CSA N     T N+ ++R+   P     
Sbjct: 162 LNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQ 221

Query: 65  RIVIVG-----ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
              +       A   +   + C V   PP  SF W      E + + S+++S     + L
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPP-SFTWLRG--EEVIQLRSKKYSLLGGSN-L 277

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHIS 176
             + VT+ D GT +C               ++ +   P     P N          +   
Sbjct: 278 LISNVTDDDSGTYTCVVTYKNENISAS--AELTVLVPPWFLNHPSNLYAYESMD--IEFE 333

Query: 177 C 177
           C
Sbjct: 334 C 334

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 77.2 bits (190), Expect = 2e-16
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 13/143 (9%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-IC 61
           G   +   +    +L   +L++  V+   +GTY C         ++   +L V   P   
Sbjct: 258 GEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISA-SAELTVLVPPWFL 316

Query: 62  K--SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
              S+            ++  CAV   P   +  W  N  G+ + + S+ F      + L
Sbjct: 317 NHPSNLYAYES----MDIEFECAVSGKPVP-TVNWMKN--GDVV-IPSDYFQIVGGSN-L 367

Query: 120 RYTPVTELDYGTLSCAAQNAIGT 142
           R   V + D G   C A+N  G 
Sbjct: 368 RILGVVKSDEGFYQCVAENEAGN 390

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 71.4 bits (175), Expect = 2e-14
 Identities = 41/192 (21%), Positives = 65/192 (33%), Gaps = 26/192 (13%)

Query: 4   GIPLAHNTSARI-ILSNQSLVLQKV-----SRQSAGTYKCSA-INTKGEATSNQLKLRVK 56
           G+ LA     R   L N SL++Q +      +   G Y+C A +   G   S   K+ V 
Sbjct: 60  GLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA 119

Query: 57  YAPICKS---DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG 113
                 S        +G    ++V + C V  DP   +  W+ N        G  R    
Sbjct: 120 GPLRFLSQTESITAFMG----DTVLLKCEVIGDPMP-TIHWQKNQQDLNPIPGDSRVVVL 174

Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK--------PQPPQNCSV 165
             G+ L+ + +   D G   C+A+N   T+        +L+           Q P N   
Sbjct: 175 PSGA-LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIA 233

Query: 166 RNETTSSVHISC 177
                    + C
Sbjct: 234 IEG--KDAVLEC 243

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 25/150 (16%), Positives = 54/150 (36%), Gaps = 20/150 (13%)

Query: 41  NTKGEATSNQLKLRVKYAPICK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN 97
           +    +  +      + +       SD + + G     +V ++C+ E+D      KWK +
Sbjct: 5   SELESS-HHHHHHGGRRSLHFVSEPSDAVTMRG----GNVLLNCSAESDRGVPVIKWKKD 59

Query: 98  NSGETLDVG-SERFSSGSRGSM----LRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
             G  L +G  +R      GS+    + ++   + D G   C A       +     +V+
Sbjct: 60  --GLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVM 117

Query: 153 LAGKP---QPPQNCSVRNETTSSVHISCTP 179
           +AG        ++ +       +V + C  
Sbjct: 118 VAGPLRFLSQTESITAFMG--DTVLLKCEV 145

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 81.8 bits (202), Expect = 4e-18
 Identities = 35/140 (25%), Positives = 53/140 (37%), Gaps = 2/140 (1%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
           G  L     +R  L    LV+    +   AG+Y+C A N +G   S +  LR  +     
Sbjct: 45  GTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS 104

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
           ++    V  +    V   C+     PA S++W  N     +     RF S + G+ L   
Sbjct: 105 AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN-LYIA 163

Query: 123 PVTELDYGTLSCAAQNAIGT 142
                D G  SC A + I  
Sbjct: 164 KTEASDLGNYSCFATSHIDF 183

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 65.7 bits (160), Expect = 1e-12
 Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 22/153 (14%)

Query: 1   MAGGIPLAH--------NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLK 52
            A G P+          + +++ + S   L +Q V  +  GTY+C A N KG  T  Q +
Sbjct: 230 FAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTY-QGR 288

Query: 53  LRVKYAP---ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER 109
           + +   P      +D    +G      +   C     P   + +W  +  G+ L     R
Sbjct: 289 IIIHAQPDWLDVITDTEADIG----SDLRWSCVASGKPRP-AVRWLRD--GQPLA-SQNR 340

Query: 110 FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
                 G  LR++ +   D G   C A+N  GT
Sbjct: 341 IE--VSGGELRFSKLVLEDSGMYQCVAENKHGT 371

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 25/186 (13%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT----SNQLKLRVKYAPI 60
             +  +    +  +  +L + K      G Y C A +     T    S   +L +     
Sbjct: 143 NFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA 202

Query: 61  CKSDRIVIVG------ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
            +    +         A   + V + C    +P     KW+  +       GS+     S
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVP-QIKWRKLD-------GSQTSKWLS 254

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTS 171
              +L    V   D GT  C A+N  G        ++++  +P       +     +  S
Sbjct: 255 SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ--GRIIIHAQPDWLDVITDTEA--DIGS 310

Query: 172 SVHISC 177
            +  SC
Sbjct: 311 DLRWSC 316

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 11/121 (9%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
           +  +   G++  E V + C   A+PPA +++WK N  G  L +G +       G ++   
Sbjct: 12  AHTLFPEGSAE-EKVTLTCRARANPPA-TYRWKMN--GTELKMGPDSRYRLVAGDLVISN 67

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP----QPPQNCSVRNETTSSVHISCT 178
           PV   D G+  C A NA GT V+     +          +      +       V  +C+
Sbjct: 68  PVKAKDAGSYQCVATNARGTVVSREA-SLRFGFLQEFSAEERDPVKITEG--WGVMFTCS 124

Query: 179 P 179
           P
Sbjct: 125 P 125

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 42.2 bits (99), Expect = 8e-05
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
           G PL   +  RI +S   L   K+  + +G Y+C A N  G   ++  +L V+
Sbjct: 332 GQPL--ASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYAS-AELTVQ 381

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 77.9 bits (192), Expect = 7e-18
 Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 7/142 (4%)

Query: 4   GIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAIN-TKGEATSNQLKLRVKYAP-I 60
              +   +  R  +L+N +L +  +++   G Y+C      +GE     + + V   P I
Sbjct: 40  NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI 99

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
               +     A R E +   C     P   +  W  N  G+ ++  +E++      + L 
Sbjct: 100 SMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRN--GKLIE-ENEKYILKGSNTELT 155

Query: 121 YTPVTELDYGTLSCAAQNAIGT 142
              +   D G   C A N  G 
Sbjct: 156 VRNIINSDGGPYVCRATNKAGE 177

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 50.5 bits (121), Expect = 6e-08
 Identities = 19/122 (15%), Positives = 40/122 (32%), Gaps = 14/122 (11%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
           S +    G    E  ++ C V + P   +  W ++   E +   S+   +    + L+  
Sbjct: 10  SPQEFKQG----EDAEVVCRVSSSPAP-AVSWLYH--NEEVTTISDNRFAMLANNNLQIL 62

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP-----QPPQNCSVRNETTSSVHISC 177
            + + D G   C  +     ++      V++   P     Q   N +        +  SC
Sbjct: 63  NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG--EEMTFSC 120

Query: 178 TP 179
             
Sbjct: 121 RA 122

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
            G  +  N    +  SN  L ++ +     G Y C A N  GE    Q  L+V
Sbjct: 135 NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-QAFLQV 186

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 81.0 bits (200), Expect = 8e-18
 Identities = 34/141 (24%), Positives = 55/141 (39%), Gaps = 4/141 (2%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
           G  +      R  + + SL++   ++   AGTY+C A N+ G   S + KL+  Y    K
Sbjct: 46  GTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFK 105

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
           +     V   R + + + C         S+ W FN         + RF S   G+ L   
Sbjct: 106 TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN--EYPSYQDNRRFVSQETGN-LYIA 162

Query: 123 PVTELDYGTLSCAAQNAIGTQ 143
            V + D G  +C   N +   
Sbjct: 163 KVEKSDVGNYTCVVTNTVTNH 183

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 69.5 bits (170), Expect = 7e-14
 Identities = 35/186 (18%), Positives = 61/186 (32%), Gaps = 21/186 (11%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA--TSNQLKLRVKYAPIC 61
             P   +    +     +L + KV +   G Y C   NT            L ++   + 
Sbjct: 141 EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVM 200

Query: 62  KSDRIVI-------VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
                 I       V A +  +V + C    +P   +  W+  + G+ +   + R  S  
Sbjct: 201 GEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVP-TILWRRAD-GKPIARKARRHKSNG 258

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTS 171
               L      + D G+  C A+N+ G  V     Q+    +P   Q   +  V  E + 
Sbjct: 259 I---LEIPNFQQEDAGSYECVAENSRGKNVAK--GQLTFYAQPNWVQIINDIHVAMEES- 312

Query: 172 SVHISC 177
            V   C
Sbjct: 313 -VFWEC 317

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 66.8 bits (163), Expect = 5e-13
 Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 16/143 (11%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
            G P+A    AR   SN  L +    ++ AG+Y+C A N++G+  + + +L     P   
Sbjct: 243 DGKPIA--RKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA-KGQLTFYAQPNWV 299

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
              +D  V +     ESV   C     P   +++W  N  G+ L    +R         L
Sbjct: 300 QIINDIHVAME----ESVFWECKANGRPKP-TYRWLKN--GDPLL-TRDRIQ--IEQGTL 349

Query: 120 RYTPVTELDYGTLSCAAQNAIGT 142
             T V   D G   C A+N  G 
Sbjct: 350 NITIVNLSDAGMYQCVAENKHGV 372

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
           S  +  +  S  + V + C V+ +P     +WK N  G  +D+G +   S   GS+L   
Sbjct: 13  SHVMFPLD-SEEKKVKLSCEVKGNPKP-HIRWKLN--GTDVDIGMDFRYSVVDGSLLINN 68

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP----QPPQNCSVRNETTSSVHISCT 178
           P    D GT  C A N+ GT V+    ++  A       +     SVR      + + C 
Sbjct: 69  PNKTQDAGTYQCIATNSFGTIVS-REAKLQFAYLENFKTRTRSTVSVR--RGQGMVLLCG 125

Query: 179 P 179
           P
Sbjct: 126 P 126

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
           G PL   T  RI +   +L +  V+   AG Y+C A N  G   S+
Sbjct: 333 GDPL--LTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSS 376

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 78.7 bits (194), Expect = 2e-17
 Identities = 31/185 (16%), Positives = 62/185 (33%), Gaps = 15/185 (8%)

Query: 3   GGIPLAHNTSARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
            G  +       +        L +   + + AG Y+C A + KG+     + L +     
Sbjct: 41  QGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLT 100

Query: 61  CK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGS 117
            +   S +    G    E  ++ C V + P   +  W ++N  E   +   RF+  +  +
Sbjct: 101 FREVVSPQEFKQG----EDAEVVCRVSSSPAP-AVSWLYHN-EEVTTISDNRFAMLANNN 154

Query: 118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT---SSVH 174
            L+   + + D G   C  +     ++      V++   P         N T      + 
Sbjct: 155 -LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213

Query: 175 ISCTP 179
            SC  
Sbjct: 214 FSCRA 218

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 77.5 bits (191), Expect = 6e-17
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 9/162 (5%)

Query: 4   GIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRVKYAP-I 60
              +   +  R  +L+N +L +  +++   G Y+C      +GE     + + V   P I
Sbjct: 136 NEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI 195

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
               +     A R E +   C     P   +  W  N  G+ ++  +E++      + L 
Sbjct: 196 SMPQKSFNATAERGEEMTFSCRASGSPEP-AISWFRN--GKLIE-ENEKYILKGSNTELT 251

Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
              +   D G   C A N  G        QV    +     +
Sbjct: 252 VRNIINSDGGPYVCRATNKAGEDEKQAFLQVF--VQHHHHHH 291

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
            G  +  N    +  SN  L ++ +     G Y C A N  GE    Q  L+V    
Sbjct: 231 NGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-QAFLQVFVQH 286

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 42.5 bits (100), Expect = 6e-05
 Identities = 23/121 (19%), Positives = 35/121 (28%), Gaps = 16/121 (13%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG--SMLR 120
           S   + VG    ES    C    +P   S  W     GE + + ++R      G  S L 
Sbjct: 12  SKVELSVG----ESKFFTCTAIGEPE--SIDWYNPQ-GEKI-ISTQRVVVQKEGVRSRLT 63

Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISC 177
                  D G   C A +A G         + +  K    +       +        + C
Sbjct: 64  IYNANIEDAGIYRCQATDAKGQTQE-ATVVLEIYQKLTFREVVSPQEFKQG--EDAEVVC 120

Query: 178 T 178
            
Sbjct: 121 R 121

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 76.8 bits (189), Expect = 2e-17
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 16/158 (10%)

Query: 3   GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
            G  L+ N     ++ N     +L +   +   AG YKC      G  +   + +++   
Sbjct: 41  NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK 100

Query: 59  PICK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG-SERFSSGS 114
            + K   + +    G    E   I C V +  P  +  WK    G  + +    RF   S
Sbjct: 101 LMFKNAPTPQEFKEG----EDAVIVCDVVSSLPP-TIIWKHK--GRDVILKKDVRFIVLS 153

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
               L+   + + D GT  C  +     ++     QV+
Sbjct: 154 NNY-LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 57.1 bits (138), Expect = 3e-10
 Identities = 31/133 (23%), Positives = 38/133 (28%), Gaps = 17/133 (12%)

Query: 53  LRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS- 111
           L+V   P   S   + VG    ES    C V  D   +   W   N GE L    +R S 
Sbjct: 3   LQVDIVP---SQGEISVG----ESKFFLCQVAGDAKDKDISWFSPN-GEKLSPNQQRISV 54

Query: 112 --SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVR 166
             +    S L        D G   C      GTQ       V +  K      P     +
Sbjct: 55  VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE-ATVNVKIFQKLMFKNAPTPQEFK 113

Query: 167 NETTSSVHISCTP 179
                   I C  
Sbjct: 114 EGED--AVIVCDV 124

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 77.0 bits (189), Expect = 3e-17
 Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 9/151 (5%)

Query: 15  IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS 74
           II SN SL+ Q ++ +  G Y     +     T   ++  V         ++        
Sbjct: 66  IIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKEL 125

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
           +SV + C         + +W FN   ++L + +ER +     S+LR  P+   D G   C
Sbjct: 126 DSVTLTCLSNDIGA--NIQWLFN--SQSLQL-TERMTLSQNNSILRIDPIKREDAGEYQC 180

Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSV 165
              N +  + +  +   ++      P +   
Sbjct: 181 EISNPVSVRRSNSIKLDIIF----DPHHHHH 207

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 49.7 bits (118), Expect = 2e-07
 Identities = 14/57 (24%), Positives = 23/57 (40%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
               L       +  +N  L +  + R+ AG Y+C   N      SN +KL + + P
Sbjct: 146 NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 78.0 bits (192), Expect = 4e-17
 Identities = 31/145 (21%), Positives = 54/145 (37%), Gaps = 9/145 (6%)

Query: 4   GIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAP-I 60
           G  +      R  +LSN  L ++ + +   GTY+C          +   +++ V   P +
Sbjct: 138 GRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTV 197

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS---ERFSSGSRGS 117
                IV   A+  +SV + C  +  P   +  W  +  GE ++      E+       S
Sbjct: 198 QARQSIVNATANLGQSVTLVCDADGFPEP-TMSWTKD--GEPIENEEEDDEKHIFSDDSS 254

Query: 118 MLRYTPVTELDYGTLSCAAQNAIGT 142
            L    V + D     C A+N  G 
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAGE 279

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 78.0 bits (192), Expect = 4e-17
 Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 13/167 (7%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK---SDRIVIVGASRS 74
            + +L +   +   AG YKC      G  +   + +++    + K   + +    G    
Sbjct: 60  DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEG---- 115

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
           E   I C V +  P  +  WK     + +     RF   S    L+   + + D GT  C
Sbjct: 116 EDAVIVCDVVSSLPP-TIIWKHKG-RDVILKKDVRFIVLSNNY-LQIRGIKKTDEGTYRC 172

Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT---SSVHISCT 178
             +     ++     QV++   P      S+ N T     SV + C 
Sbjct: 173 EGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCD 219

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 30/132 (22%), Positives = 40/132 (30%), Gaps = 17/132 (12%)

Query: 53  LRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS- 111
           L+V   P   S   + VG    ES    C V  D   +   W F+ +GE L    +R S 
Sbjct: 3   LQVDIVP---SQGEISVG----ESKFFLCQVAGDAKDKDISW-FSPNGEKLSPNQQRISV 54

Query: 112 --SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVR 166
             +    S L        D G   C      GTQ    +   +   K      P     +
Sbjct: 55  VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQ-KLMFKNAPTPQEFK 113

Query: 167 NETTSSVHISCT 178
                   I C 
Sbjct: 114 EG--EDAVIVCD 123

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 76.3 bits (188), Expect = 4e-17
 Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 13/153 (8%)

Query: 4   GIPLAHNTSARIILSN-QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
            I +    +   I  N Q L +  V     G Y C+A N  G A  +   L+VK  P   
Sbjct: 45  KILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKIT 104

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
               +  +I G        + C    +P   S  W        L   + R +    GS L
Sbjct: 105 RPPINVKIIEG----LKAVLPCTTMGNPKP-SVSWIKG--DSALRE-NSRIAVLESGS-L 155

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
           R   V + D G   C A+N++GT  +  +   V
Sbjct: 156 RIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 60.5 bits (147), Expect = 2e-11
 Identities = 29/120 (24%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
                +V     E     CAVE+ P      W  N     + +   R+S    G +L   
Sbjct: 15  ETVDALVE----EVATFMCAVESYPQP-EISWTRN--KILIKLFDTRYSIRENGQLLTIL 67

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISCTP 179
            V + D G   C A N +G  V  C   + +  KP   +PP N  +         + CT 
Sbjct: 68  SVEDSDDGIYCCTANNGVGGAVESC-GALQVKMKPKITRPPINVKII--EGLKAVLPCTT 124

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 3   GGIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
           G   L    ++RI +L + SL +  V ++ AG Y+C A N+ G A S  +KL V+
Sbjct: 137 GDSALR--ENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 77.9 bits (192), Expect = 4e-17
 Identities = 38/181 (20%), Positives = 67/181 (37%), Gaps = 20/181 (11%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI---- 60
           I    N    ++ +  +L + KV++  AG Y C A N  G+ + +  +L V+  P     
Sbjct: 46  IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKK 104

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSML 119
            +  RIV       E     C +   P      W  +     +   S+ R S     ++L
Sbjct: 105 LEPSRIVKQD----EHTRYECKIGGSPEI-KVLWYKD--ETEIQESSKFRMSFVESVAVL 157

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHIS 176
               ++  D G  +C A NA G+  +     + +   P   + P          + VH+ 
Sbjct: 158 EMYNLSVEDSGDYTCEAHNAAGSASSST--SLKVKEPPVFRKKPHPVETL--KGADVHLE 213

Query: 177 C 177
           C
Sbjct: 214 C 214

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-ICK- 62
           I  +       + S   L +  +S + +G Y C A N  G A+S+   L+VK  P   K 
Sbjct: 140 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS-TSLKVKEPPVFRKK 198

Query: 63  -SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSMLR 120
                 + G      V + C ++  PP     W  +     L  G + +  S +  + + 
Sbjct: 199 PHPVETLKG----ADVHLECELQGTPPF-QVSWHKD--KRELRSGKKYKIMSENFLTSIH 251

Query: 121 YTPVTELDYGTLSCAAQNAIGT 142
              V   D G   C A N +G+
Sbjct: 252 ILNVDSADIGEYQCKASNDVGS 273

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 14/119 (11%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ERFSSGSRGSMLRY 121
               + +G    ES    C V    P     W  +     +  G   + +     + L  
Sbjct: 13  VSVDLALG----ESGTFKCHVTGTAPI-KITWAKD--NREIRPGGNYKMTLVENTATLTV 65

Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISC 177
             VT+ D G  +C A N  G        Q+ +   P   +  +   +  +        C
Sbjct: 66  LKVTKGDAGQYTCYASNVAGKDSCSA--QLGVQEPPRFIKKLEPSRIVKQ-DEHTRYEC 121

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 79.0 bits (194), Expect = 6e-17
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 16/150 (10%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSN---QLKLRVKYAPICK---SDRIVIVGA 71
               + L+  S Q  G Y C A + K +       QL +  + AP       ++   +G 
Sbjct: 623 DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIG- 681

Query: 72  SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
              ES+++ C    +PP     W  +   ETL               L    V + D G 
Sbjct: 682 ---ESIEVSCTASGNPPP-QIMWFKD--NETLV-EDSGIVLKDGNRNLTIRRVRKEDEGL 734

Query: 132 LSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
            +C A + +G          ++ G  +   
Sbjct: 735 YTCQACSVLGCAK--VEAFFIIEGAQEKTN 762

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 71.3 bits (174), Expect = 3e-14
 Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 25/193 (12%)

Query: 9   HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI------CK 62
             + + +     +L +  V+R   G Y C+A +      +    +RV   P        +
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN-STFVRVHEKPFVAFGSGME 337

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
           S     VG    E V I       PP    KW  N  G  L+      +       L   
Sbjct: 338 SLVEATVG----ERVRIPAKYLGYPPP-EIKWYKN--GIPLESNHTIKAGHV----LTIM 386

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISCT 178
            V+E D G  +    N I  +    +  +V+   PQ  +   +    +    ++  ++CT
Sbjct: 387 EVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCT 446

Query: 179 -PGYDGGLPQTFT 190
                   P    
Sbjct: 447 VYAIP--PPHHIH 457

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 68.6 bits (167), Expect = 2e-13
 Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 13/166 (7%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGASRSES 76
           +L + KV     G YKC    T   +    + ++   +P    +     +V +  +++++
Sbjct: 87  TLTIPKVIGNDTGAYKCFYRETDLASVI-YVYVQDYRSPFIASVSDQHGVVYITENKNKT 145

Query: 77  VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA 136
           V I C         S   ++      +  G+       +G             G + C A
Sbjct: 146 VVIPCLGSISNLNVSLCARYPE-KRFVPDGNRISWDSKKG--FTIPSYMISYAGMVFCEA 202

Query: 137 QNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISCT 178
           +    +  +   Y VV+ G        S  +         + ++CT
Sbjct: 203 KINDESYQSIM-YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 247

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 65.5 bits (159), Expect = 3e-12
 Identities = 35/210 (16%), Positives = 56/210 (26%), Gaps = 40/210 (19%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQ-LKLRVKYAP--I 60
           GIPL    S   I +   L + +VS +  G Y     N   +   +  + L V   P   
Sbjct: 368 GIPL---ESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIG 424

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE------------ 108
            KS    +       +  + C V A PP     W +    E  +  S+            
Sbjct: 425 EKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEE 484

Query: 109 --------------------RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL 148
                                   G   ++               C A N +G       
Sbjct: 485 WRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVIS 544

Query: 149 YQVVLAGKPQPPQNCSVRNETTSSVHISCT 178
           + V    +     +     +   SV + CT
Sbjct: 545 FHVTRGPEITLQPDMQPTEQ--ESVSLWCT 572

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 64.0 bits (155), Expect = 8e-12
 Identities = 32/191 (16%), Positives = 51/191 (26%), Gaps = 20/191 (10%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPIC 61
                  + +     S +   +       AG   C A        S   + + V Y    
Sbjct: 166 PEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYD 225

Query: 62  -----KSDRIVIVGASRSESVDIHCAVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSR 115
                     + VG    E + ++C    +      F W++ +S         R      
Sbjct: 226 VVLSPSHGIELSVG----EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 281

Query: 116 G-------SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNE 168
           G       S L    VT  D G  +CAA + + T+      +V                E
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341

Query: 169 TT--SSVHISC 177
            T    V I  
Sbjct: 342 ATVGERVRIPA 352

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 64.0 bits (155), Expect = 9e-12
 Identities = 28/184 (15%), Positives = 52/184 (28%), Gaps = 34/184 (18%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGASRSESVD 78
              L   +   +  YKC A+N  G      +   V   P    + D          ESV 
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERV-ISFHVTRGPEITLQPDMQPTEQ----ESVS 568

Query: 79  IHCAVEADPPARSFKWKFNNS-------------------GETLDVGSERFSSGSRGSML 119
           + C  +      +  W                               +   +S +   ++
Sbjct: 569 LWCTADRSTFE-NLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIM 627

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP-----PQNCSVRNETTSSVH 174
                +  D G   C AQ+    +    + Q+ +  +  P      +N +       S+ 
Sbjct: 628 ELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTS--IGESIE 685

Query: 175 ISCT 178
           +SCT
Sbjct: 686 VSCT 689

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 55.5 bits (133), Expect = 5e-09
 Identities = 22/154 (14%), Positives = 35/154 (22%), Gaps = 16/154 (10%)

Query: 32  AGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARS 91
              + C             + L +    I K    +        ++ I C          
Sbjct: 9   VALWLCVETRAASVGLP-SVSLDLPRLSIQKDILTIKAN----TTLQITC--RGQRD--- 58

Query: 92  FKWKFNNSGETLDVGSER--FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY 149
             W + N+    +   E    S G     L    V   D G   C  +      V     
Sbjct: 59  LDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYV 118

Query: 150 QVV----LAGKPQPPQNCSVRNETTSSVHISCTP 179
           Q      +A          +      +V I C  
Sbjct: 119 QDYRSPFIASVSDQHGVVYITENKNKTVVIPCLG 152

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
              L  ++   +   N++L +++V ++  G Y C A +  G A        ++ A 
Sbjct: 704 NETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVE-AFFIIEGAQ 758

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 76.2 bits (187), Expect = 7e-17
 Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 17/148 (11%)

Query: 7   LAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPI---CK 62
           +    + R+  S+  +    V+R+  G Y C      G+      + L V   P      
Sbjct: 52  ITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTIS 111

Query: 63  SDRIVIVGASRSESVDIHC-AVEADPPARSFKWKFN-------NSGETLDVGSERFSSGS 114
               V +G        + C   +  PP+  + W  +       ++ +T    +  F+   
Sbjct: 112 VPSSVTIG----NRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMNSSFTIDP 166

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGT 142
           +   L + PVT  D G   C AQN  GT
Sbjct: 167 KSGDLIFDPVTAFDSGEYYCQAQNGYGT 194

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 23/126 (18%), Positives = 36/126 (28%), Gaps = 17/126 (13%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR------- 115
           SD  V       ES+ + C        R  +WKF     T  V      +          
Sbjct: 9   SDVQVPEN----ESIKLTCTYSGFSSPR-VEWKFVQGSTTALVCYNSQITAPYADRVTFS 63

Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSS 172
            S + ++ VT  D G  +C      G         + +   P         SV       
Sbjct: 64  SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR-- 121

Query: 173 VHISCT 178
             ++C+
Sbjct: 122 AVLTCS 127

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVK 56
                N+S  I   +  L+   V+   +G Y C A N  G A  +    +   
Sbjct: 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 77.4 bits (190), Expect = 1e-16
 Identities = 36/201 (17%), Positives = 61/201 (30%), Gaps = 22/201 (10%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
               +      R+   + +L L    ++ +GTY C+  N       + ++LRV       
Sbjct: 64  SARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMS-IELRVFENTDAF 122

Query: 63  S-----DRIVIVGASRS-ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG 116
                  +I+ +  S      D+             +W  +     LD  +E+F S    
Sbjct: 123 LPFISYPQILTLSTSGVLVCPDLSEFTRDKTDV-KIQWYKD--SLLLDKDNEKFLSVRGT 179

Query: 117 SMLRYTPVTELDYGTLSCAAQNAIGTQ---VTPCLYQVVLAGKP-------QPPQNCSVR 166
           + L    V   D G   C    A   Q   +T  +   +   K         P +  S  
Sbjct: 180 THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISA- 238

Query: 167 NETTSSVHISCTPGYDGGLPQ 187
               S + I C      G P 
Sbjct: 239 -SLGSRLTIPCKVFLGTGTPL 258

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 77.0 bits (189), Expect = 3e-16
 Identities = 28/171 (16%), Positives = 44/171 (25%), Gaps = 25/171 (14%)

Query: 6   PLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR 65
               + +   I     L L ++     GTY     N+   A      + V   P      
Sbjct: 361 DYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIA-FNVYVNTKP------ 413

Query: 66  IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSSGS 114
             I+   R  +  + C     P   +  W F    E              + S     G 
Sbjct: 414 -EILTYDRLVNGMLQCVAAGFPEP-TIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGK 471

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP---PQN 162
                          GT+ C A N +G   T   +     G  +    P +
Sbjct: 472 LVVQSSIDSSAFKHNGTVECKAYNDVGK--TSAYFNFAFKGNNKEQIHPHH 520

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 73.2 bits (179), Expect = 5e-15
 Identities = 32/173 (18%), Positives = 52/173 (30%), Gaps = 22/173 (12%)

Query: 16  ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP------ICKSDRIVIV 69
                +L +       +G + C A NT G A      L V          +  +   V  
Sbjct: 269 YERQATLTISSARVNDSGVFMCYANNTFGSANVT-TTLEVVDKGFINIFPMINTTVFVND 327

Query: 70  GASRSESVDIHCAVEADPPARSFKWKFNN----SGETLDVGSERFSSGSRGSMLRYTPVT 125
           G    E+VD+    EA P     +W + N            SE  S+    S L  T + 
Sbjct: 328 G----ENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLK 383

Query: 126 ELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT 178
             + GT +    N+           V        P+  +   +   +  + C 
Sbjct: 384 GTEGGTYTFLVSNSDVNAAIAFNVYVN-----TKPEILTY--DRLVNGMLQCV 429

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 67.0 bits (163), Expect = 6e-13
 Identities = 37/188 (19%), Positives = 61/188 (32%), Gaps = 19/188 (10%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSR-QSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
           G PL  +    I      ++++ V R        CS         S +  L+V+ A    
Sbjct: 153 GKPLPKDLRF-IPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211

Query: 60  ----ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS- 114
               + K+  ++  G    E   + C ++    +    WK  NS   L      +  G  
Sbjct: 212 PVVSVSKASYLLREG----EEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 267

Query: 115 ---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRNET 169
              R + L  +     D G   C A N  G+       +VV  G     P  N +V    
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVND 327

Query: 170 TSSVHISC 177
             +V +  
Sbjct: 328 GENVDLIV 335

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 65.5 bits (159), Expect = 2e-12
 Identities = 17/168 (10%), Positives = 41/168 (24%), Gaps = 18/168 (10%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIVIVGASRS 74
                + +K    + G Y C+  +    +      + V+      +              
Sbjct: 78  KQNEWITEKAEATNTGKYTCTNKHGLSNSIY----VFVRDPAKLFLVDRSLYGKED---- 129

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
               + C +  DP   ++  K             RF    +  ++  +         L C
Sbjct: 130 NDTLVRCPL-TDPEVTNYSLKGCQGKPLPK--DLRFIPDPKAGIMIKSVKRAYHRLCLHC 186

Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISCT 178
           +      + ++      V       P     +            ++CT
Sbjct: 187 SVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCT 234

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 37/187 (19%), Positives = 67/187 (35%), Gaps = 22/187 (11%)

Query: 3   GGIPLAHNTSARIIL--SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
               +    + ++ L  +  +L + KV++  AG Y C A N  G+ +    +L V+  P 
Sbjct: 234 DNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSC-SAQLGVQEPPR 292

Query: 61  C----KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSR 115
                +  RIV       E     C +   P      W  +     +   S+ R S    
Sbjct: 293 FIKKLEPSRIVKQD----EHTRYECKIGGSPEI-KVLWYKD--ETEIQESSKFRMSFVES 345

Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSS 172
            ++L    ++  D G  +C A NA G+  +     + +   P   + P          + 
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSST--SLKVKEPPVFRKKPHPVET--LKGAD 401

Query: 173 VHISCTP 179
           VH+ C  
Sbjct: 402 VHLECEL 408

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 76.0 bits (187), Expect = 7e-16
 Identities = 37/181 (20%), Positives = 64/181 (35%), Gaps = 19/181 (10%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK-- 62
           I  +       + S   L +  +S + +G Y C A N  G A+S+   L+VK  P+ +  
Sbjct: 332 IQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS-TSLKVKEPPVFRKK 390

Query: 63  -SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSMLR 120
                 + G      V + C ++  PP     W  +     L  G + +  S +  + + 
Sbjct: 391 PHPVETLKG----ADVHLECELQGTPPF-QVSWHKD--KRELRSGKKYKIMSENFLTSIH 443

Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISC 177
              V   D G   C A N +G+        + L   P   +   + S        V +  
Sbjct: 444 ILNVDSADIGEYQCKASNDVGSDTCVG--SITLKAPPRFVKKLSDISTVVGEE--VQLQA 499

Query: 178 T 178
           T
Sbjct: 500 T 500

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 74.8 bits (184), Expect = 1e-15
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 9/162 (5%)

Query: 4   GIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAPI 60
              L    + ++   N   SLV+ KV     G Y C A N+ G   S+  L ++ +  P 
Sbjct: 43  HTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPP 102

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSRGSML 119
             + ++  V  +    V   C +    P     W  +  GE L   +  + S     + L
Sbjct: 103 SFARKLKDVHETLGFPVAFECRINGSEPL-QVSWYKD--GELLKDDANLQTSFIHNVATL 159

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
           +     +   G  +C+A N +GT  +    ++ L+    PP 
Sbjct: 160 QILQTDQSHVGQYNCSASNPLGTASSSA--KLTLSEHEVPPF 199

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 74.5 bits (183), Expect = 2e-15
 Identities = 31/152 (20%), Positives = 52/152 (34%), Gaps = 19/152 (12%)

Query: 3   GGIPLAHNTSARIILS----NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
               L   +  +  +       S+ +  V     G Y+C A N  G  T     + +K  
Sbjct: 421 DKREL--RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTC-VGSITLKAP 477

Query: 59  PICK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF--SSG 113
           P      SD   +VG    E V +   +E   P  S  W  +     +   S+    S  
Sbjct: 478 PRFVKKLSDISTVVG----EEVQLQATIEGAEPI-SVAWFKD--KGEIVRESDNIWISYS 530

Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145
              + L+++     + G  +C  +N  GTQ  
Sbjct: 531 ENIATLQFSRAEPANAGKYTCQIKNEAGTQEC 562

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 72.9 bits (179), Expect = 6e-15
 Identities = 38/181 (20%), Positives = 64/181 (35%), Gaps = 11/181 (6%)

Query: 3   GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAP 59
            G  L  + + +    +   +L + +  +   G Y CSA N  G A+S+ +L L     P
Sbjct: 138 DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVP 197

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
                + V V  +  ES    C V    P     W  +N  E    G+ + +     + L
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPI-KITWAKDN-REIRPGGNYKMTLVENTATL 255

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTSSVHIS 176
               VT+ D G  +C A N  G        Q+ +   P+     +   +  +        
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKDSCSA--QLGVQEPPRFIKKLEPSRIVKQ-DEHTRYE 312

Query: 177 C 177
           C
Sbjct: 313 C 313

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 74.1 bits (182), Expect = 3e-16
 Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 26/176 (14%)

Query: 4   GIPLAHNTSARIILSN----QSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYA 58
           G  ++   S   +L        L ++ V        Y+C A N  G+A S    L +   
Sbjct: 44  GKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEG 103

Query: 59  PICK----------SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE 108
                           R++ VG     +V + C    +P   +  W  N     +D+ + 
Sbjct: 104 DKTPAGFPVITQGPGTRVIEVG----HTVLMTCKAIGNPTP-NIYWIKN--QTKVDMSNP 156

Query: 109 RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK--PQPPQN 162
           R+S    G  L+     E D G   C A+N++GT+ +      V   +   +   +
Sbjct: 157 RYSLKD-GF-LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTKHHHH 210

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 50.6 bits (121), Expect = 8e-08
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
               +  +   R  L +  L ++    +  G Y+C A N+ G   S    L VK   +
Sbjct: 147 NQTKVDMSNP-RYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV 203

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 75.6 bits (185), Expect = 4e-16
 Identities = 25/123 (20%), Positives = 38/123 (30%), Gaps = 7/123 (5%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
              L         +  C           + L L V+Y P    +        +   V + 
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKES-LTLNVQYEPEVTIEGFDGNWYLQRMDVKLT 253

Query: 81  CAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI 140
           C  +A+PPA  + W   N      V           ++    P+     GT  C A N I
Sbjct: 254 CKADANPPATEYHWTTLNGSLPKGV------EAQNRTLFFKGPINYSLAGTYICEATNPI 307

Query: 141 GTQ 143
           GT+
Sbjct: 308 GTR 310

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 64.4 bits (156), Expect = 3e-12
 Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 5/135 (3%)

Query: 17  LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGAS 72
            ++ ++ L ++  +  G Y C           +QL L V   P          +      
Sbjct: 89  FTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQ 148

Query: 73  RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG-SRGSMLRYTPVTELDYGT 131
             + +   C      P     W+    GE         +   +  S  R  P  E    +
Sbjct: 149 DDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQS 208

Query: 132 LSCAAQNAIGTQVTP 146
           L+C     +      
Sbjct: 209 LACIVNYHMDRFKES 223

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 47.1 bits (111), Expect = 2e-06
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 15  IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD 64
              +        ++   AGTY C A N  G   S Q+++ +  A   +  
Sbjct: 279 EAQNRTLFFKGPINYSLAGTYICEATNPIGT-RSGQVEVNITEAAALEHH 327

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 73.2 bits (180), Expect = 5e-16
 Identities = 28/156 (17%), Positives = 48/156 (30%), Gaps = 16/156 (10%)

Query: 3   GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
            G  +  +     I   +     L++  V+   A  Y+  A N  G  +     L V+  
Sbjct: 41  QGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVP 99

Query: 59  PICKSDRIVI----VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF---S 111
                 + +     V A R E V I       P      W+     + +D  +  +    
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPV-ITWQKG--QDLIDN-NGHYQVIV 155

Query: 112 SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147
           + S  S++    V   D G     A+N  G      
Sbjct: 156 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTV 191

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 10/102 (9%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF---SSGSRGSML 119
            +  V        +  + C V   P     KW     G+ +     ++           L
Sbjct: 12  RNLNVRYQ----SNATLVCKVTGHPKP-IVKWYRQ--GKEIIADGLKYRIQEFKGGYHQL 64

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
               VT+ D       A N  G+       +V +  K   P+
Sbjct: 65  IIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 106

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 28/147 (19%), Positives = 50/147 (34%), Gaps = 14/147 (9%)

Query: 6   PLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYAP---IC 61
            +  +   R+      +  + V+R+  GTY C      G +    ++KL V   P     
Sbjct: 54  KITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV 113

Query: 62  KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN------NSGETLDVGSERFSSGSR 115
                  +G        + C+ +   P   + W  +      N   T    +  +     
Sbjct: 114 NIPSSATIG----NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPT 169

Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGT 142
              L + P++  D G  SC A+N  GT
Sbjct: 170 TGELVFDPLSASDTGEYSCEARNGYGT 196

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 42.6 bits (100), Expect = 4e-05
 Identities = 20/126 (15%), Positives = 38/126 (30%), Gaps = 17/126 (13%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR------- 115
            +  +         V + CA       R  +WKF+    T  V      + S        
Sbjct: 12  PEVRIPEN----NPVKLSCAYSGFSSPR-VEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66

Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTSS 172
            + + +  VT  D GT +C      G        ++++   P         S      + 
Sbjct: 67  PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG--NR 124

Query: 173 VHISCT 178
             ++C+
Sbjct: 125 AVLTCS 130

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 6   PLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
               N+S  +  +   LV   +S    G Y C A N  G   ++   +R++
Sbjct: 157 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS-NAVRME 206

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 74.2 bits (182), Expect = 1e-15
 Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 12/136 (8%)

Query: 15  IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC-------KSDRIV 67
                    + +     +  Y+CSA+    +  S  ++L+V+             ++ + 
Sbjct: 139 SFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVR 198

Query: 68  IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-VGSERFSSGSRGSMLRYTPVTE 126
           I G    E+  I C+  +         + NN+   +        +   +   L    V  
Sbjct: 199 IRG----EAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDF 254

Query: 127 LDYGTLSCAAQNAIGT 142
              G  SC A N  G 
Sbjct: 255 QHAGNYSCVASNVQGK 270

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 72.3 bits (177), Expect = 5e-15
 Identities = 25/173 (14%), Positives = 48/173 (27%), Gaps = 16/173 (9%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIV 69
               S+  L     + Q+ GTY+C+        ++  + L VK       +   + +V  
Sbjct: 45  YSDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAA-IHLYVKDPARPWNVLAQEVVVFE 103

Query: 70  GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDY 129
                +   + C +                G  L   +  +S               +  
Sbjct: 104 D----QDALLPCLLTDPVLEAGVSLVRVR-GRPLMRHT-NYSFSPWHG-FTIHRAKFIQS 156

Query: 130 GTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISCT 178
               C+A       ++  +   V    P PP    V  E       +  I C+
Sbjct: 157 QDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCS 209

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 74.1 bits (181), Expect = 1e-15
 Identities = 30/231 (12%), Positives = 60/231 (25%), Gaps = 28/231 (12%)

Query: 12  SARIILSNQSLVLQKVSRQSAGT-YKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVG 70
                + N  L +   +   +   Y C+     G+     ++  ++  P C  +   +  
Sbjct: 81  PLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELG- 139

Query: 71  ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG 130
                 +D++C +       +  W  N   + L +   ++S    G  L        D G
Sbjct: 140 THDKYGIDLYCGILYAKHYNNITWYKN--NQELIIDGTKYSQS--GQNLIIHNPELEDSG 195

Query: 131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT--------SSVHISC----T 178
              C             +          P Q+   +               +I+C    T
Sbjct: 196 RYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVST 255

Query: 179 PG----------YDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLG 219
                          G        +YS    +  +    L     T E +G
Sbjct: 256 SLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIG 306

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 63.3 bits (153), Expect = 8e-12
 Identities = 23/158 (14%), Positives = 44/158 (27%), Gaps = 16/158 (10%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-----QLKLRVKYA 58
              L      +   S Q+L++     + +G Y C          ++        L V  +
Sbjct: 167 NQEL-IIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPS 225

Query: 59  PICKSDRIV--IVGASRSESVDIHCAVEADPPAR---SFKWKFNNSGETLDVGSERFSSG 113
              +   I+   +  +  E  +I C   +           W+  +               
Sbjct: 226 QDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILT 285

Query: 114 SRG----SMLRYTPVTELDYGTL-SCAAQNAIGTQVTP 146
           S G    + L +  VTE   G   +C   N    +   
Sbjct: 286 SSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLT 323

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 40.2 bits (93), Expect = 3e-04
 Identities = 19/149 (12%), Positives = 33/149 (22%), Gaps = 9/149 (6%)

Query: 33  GTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSF 92
             +     +T     S  L     +      + +  +G    E     C    D      
Sbjct: 9   TEFFNKMRDTLPAKDSKWLNPSCMFGGT--MNDMAALG----EPFSAKCPPIEDSLLSHR 62

Query: 93  KWKFNNSGETLDVGSERFSSGSR--GSMLRYTPVTELDYGTL-SCAAQNAIGTQVTPCLY 149
               +N      +G  R     R     L     T  D      C      G  V   + 
Sbjct: 63  YNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVR 122

Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHISCT 178
             +       P+   +       + + C 
Sbjct: 123 SHIRKPPSCIPETYELGTHDKYGIDLYCG 151

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 73.1 bits (179), Expect = 2e-15
 Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 12/147 (8%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC-- 61
           G       +       +  +++K     + TY C  +    E+TS  + L+V        
Sbjct: 128 GGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPP 187

Query: 62  -----KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGSR 115
                 S  + I G    E+  I C+        +   K  ++   + + S+ + +   +
Sbjct: 188 QIKLEPSKLVRIRG----EAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKK 243

Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGT 142
              L    V   D G  SC A N +GT
Sbjct: 244 VRALSLNAVDFQDAGIYSCVASNDVGT 270

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 72.3 bits (177), Expect = 4e-15
 Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 16/181 (8%)

Query: 6   PLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----IC 61
           P++   +        +L  +  + ++ GTY+C+ +      ++  + L VK       + 
Sbjct: 37  PISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTT-IHLYVKDPAHSWNLL 95

Query: 62  KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
             +  V+ G    +   + C +       S        G    +    +           
Sbjct: 96  AQEVTVVEG----QEAVLPCLITDPALKDSVSLMRE--GGRQVLRKTVYFFSPWRG-FII 148

Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISC 177
                LD  T  C          +  ++  V    P+PPQ     ++       +  I C
Sbjct: 149 RKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVC 208

Query: 178 T 178
           +
Sbjct: 209 S 209

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 71.0 bits (174), Expect = 3e-15
 Identities = 29/147 (19%), Positives = 43/147 (29%), Gaps = 23/147 (15%)

Query: 4   GIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           G  + +     I +S Q     L L+ V R  AG Y C   +      S  + L V+  P
Sbjct: 40  GAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVP 99

Query: 60  ICKSDRIVI----VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR 115
                   +    +    +    + C     P   +  W        +            
Sbjct: 100 -----FFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRG--TTKIG------GPAPS 146

Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGT 142
            S+L  T VT       SC A N  G 
Sbjct: 147 PSVLNVTGVT--QSTMFSCEAHNLKGL 171

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 24/131 (18%), Positives = 46/131 (35%), Gaps = 19/131 (14%)

Query: 53  LRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF-- 110
           L++  AP       V  G    + V ++C+VE        +W  +  G  +    + +  
Sbjct: 3   LKLMGAP---VKLTVSQG----QPVKLNCSVEGMEEP-DIQWVKD--GAVVQNLDQLYIP 52

Query: 111 -SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVR 166
            S       L    V   D G   C  ++   T+++     + + G P     P++ +V 
Sbjct: 53  VSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS-QPVWLTVEGVPFFTVEPKDLAVP 111

Query: 167 NETTSSVHISC 177
                   +SC
Sbjct: 112 PNAP--FQLSC 120

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 10/48 (20%), Positives = 18/48 (37%)

Query: 9   HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
             T+     +    VL       +  + C A N KG A+S    + ++
Sbjct: 135 RGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ 182

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 73.6 bits (180), Expect = 5e-15
 Identities = 18/130 (13%), Positives = 38/130 (29%), Gaps = 11/130 (8%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-ICKSDRIVIVGAS 72
           R ++      +  V+R   G Y CS+     ++      + +     I  ++        
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSAL----VTIVEKGFINATNSSEDYEID 339

Query: 73  RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTL 132
           + E        +A P  R   W F+   ++     +       G  +      +   G  
Sbjct: 340 QYEEFCFSVRFKAYPQIR-CTWTFS--RKSFPCEQKGL---DNGYSISKFCNHKHQPGEY 393

Query: 133 SCAAQNAIGT 142
              A+N    
Sbjct: 394 IFHAENDDAQ 403

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 67.8 bits (165), Expect = 4e-13
 Identities = 24/188 (12%), Positives = 47/188 (25%), Gaps = 25/188 (13%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-IC 61
                +    +  ++  +  VL +         +C A N  G   +    + +   P   
Sbjct: 177 DSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFTIDLNQTPQTT 233

Query: 62  KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS------- 114
                + VG    E + I C            W+     + L+ G+    S         
Sbjct: 234 LPQLFLKVG----EPLWIRCKAVHVNHGFGLTWELE--NKALEEGNYFEMSTYSTNRTMI 287

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTS 171
           R      + V   D G  +C++              V +  K        +     +   
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPSQSAL-----VTIVEKGFINATNSSEDYEIDQYE 342

Query: 172 SVHISCTP 179
               S   
Sbjct: 343 EFCFSVRF 350

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 64.0 bits (155), Expect = 8e-12
 Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 21/139 (15%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73
           + + +  S+      +   G Y   A N   + T     L ++  P     +++      
Sbjct: 372 KGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKM-FTLNIRRKP-----QVLAEA--- 422

Query: 74  SESVDIHCAVEADPPARSFKWKFNNSGETLDVG----------SERFSSGSRGSMLRYTP 123
             +    C  +  P   S+ WK  +                  + R   G   S      
Sbjct: 423 -SASQASCFSDGYPLP-SWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNM 480

Query: 124 VTELDYGTLSCAAQNAIGT 142
              +    + C A N++GT
Sbjct: 481 SEAIKGFLVKCCAYNSLGT 499

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 62.0 bits (150), Expect = 3e-11
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 17/162 (10%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
           S+V+ K++   AG Y     +     T     + ++   +    R         +++   
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTI-LFTVSIRNTLLYTLRRPYFRKMENQDAL--V 160

Query: 81  CAVEADPPARSFKWKFNNS-GETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA 139
           C  E+ P     +W   +S GE+    S                + EL    + C A+N 
Sbjct: 161 CISESVPEP-IVEWVLCDSQGESCKEESPAVVKKEEKV------LHELFGTDIRCCARNE 213

Query: 140 IGTQVTPCLYQVVLAGKPQ--PPQNCSVRNETTSSVHISCTP 179
           +G + T  L+ + L   PQ   PQ      E    + I C  
Sbjct: 214 LGRECT-RLFTIDLNQTPQTTLPQLFLKVGEP---LWIRCKA 251

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 46.2 bits (109), Expect = 6e-06
 Identities = 27/169 (15%), Positives = 43/169 (25%), Gaps = 23/169 (13%)

Query: 27  VSRQSAGTYKCSAINTKGEATS----------------NQLKLRVKYAPICKSDRIVIVG 70
              Q     KC  IN K   +S                    LR + +        V V 
Sbjct: 2   TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV- 60

Query: 71  ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG 130
              S S+ +   V+A     S  W F +S   L+              +    +TE   G
Sbjct: 61  -DVSASITLQVLVDAPGNI-SCLWVFKHSS--LNCQPHFDLQNRGVVSMVILKMTETQAG 116

Query: 131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
                 Q+         L+ V +              +  +   + C  
Sbjct: 117 EYLLFIQSEATN--YTILFTVSIRNTLLYTLRRPYFRKMENQDALVCIS 163

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 69.9 bits (171), Expect = 8e-15
 Identities = 25/151 (16%), Positives = 40/151 (26%), Gaps = 20/151 (13%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-ICK--SDRIVIVG 70
              +    L +  +     G Y+C          S    + ++  P   +   DR V   
Sbjct: 62  DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAAN 121

Query: 71  ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG 130
                  ++ C  +  P      W  +     L          S    L    +      
Sbjct: 122 ----TPFNLSCQAQGPPEPVDLLWLQD--AVPLATAPGHGPQRS----LHVPGLN--KTS 169

Query: 131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
           + SC A NA G   +      VL     P Q
Sbjct: 170 SFSCEAHNAKGVTTSRTATITVL-----PQQ 195

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 22/126 (17%), Positives = 40/126 (31%), Gaps = 18/126 (14%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNN--------SGETLDVGSERFSSGS 114
            +     G     +  + C ++         W  +         +   + +G +      
Sbjct: 10  GNITGARG----LTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWI 65

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTS 171
             S LR T +   D G   C       T V+     V L G P   + P++ +V   T  
Sbjct: 66  VVSQLRITSLQLSDTGQYQCLVFLGHQTFVS-QPGYVGLEGLPYFLEEPEDRTVAANTP- 123

Query: 172 SVHISC 177
             ++SC
Sbjct: 124 -FNLSC 128

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 70.1 bits (171), Expect = 8e-15
 Identities = 21/147 (14%), Positives = 37/147 (25%), Gaps = 12/147 (8%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
           +    P           +   LV+   +    G Y C     + E T  Q  L V     
Sbjct: 48  IFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTK-QEHLSVVKPLT 106

Query: 61  ---CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRG 116
                              + + C V A P     +W      E      +        G
Sbjct: 107 LSVHSERSQFPDF----SVLTVTCTVNAFPHPH-VQWLMPEGVEPAPTAANGGVMKEKDG 161

Query: 117 SM--LRYTPVTELDYGTLSCAAQNAIG 141
           S+       + +  +  ++C  +N   
Sbjct: 162 SLSVAVDLSLPKPWHLPVTCVGKNDKE 188

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 24/158 (15%), Positives = 43/158 (27%), Gaps = 26/158 (16%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS--- 74
           +   L+   V  + AG Y C   N      S   +L V   P      +  V  S+    
Sbjct: 63  NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122

Query: 75  -----------ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTP 123
                       ++ + C     P    ++W  N     L        +     +     
Sbjct: 123 VEPTSQKLMPGSTLVLQCVAVGSPIP-HYQWFKN--ELPL--------THETKKLYMVPY 171

Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
           V     GT  C   N   +Q +    ++++        
Sbjct: 172 VDLEHQGTYWCHVYNDRDSQDS-KKVEIIIDELNNLGH 208

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 69.5 bits (170), Expect = 2e-14
 Identities = 36/172 (20%), Positives = 58/172 (33%), Gaps = 21/172 (12%)

Query: 5   IPLAHNTSARIILSNQSL----VLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP- 59
           +      S R+   + +L     +Q    Q  G Y C A N  G+A S    L++     
Sbjct: 50  VSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD 109

Query: 60  ---ICKSDRIVIVGASRSESVDIHC-AVEADPPARSFKWKFNN-----SGETLDVGSERF 110
              +   D  V  G    E+  + C   +  P   +  W  +              S R 
Sbjct: 110 DFRVEPKDTRVAKG----ETALLECGPPKGIPEP-TLIWIKDGVPLDDLKAMSFGASSRV 164

Query: 111 SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
                G+ L  + V  +D G   C AQN +GT+ +     +V   K     +
Sbjct: 165 RIVDGGN-LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV-KAAAHHH 214

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 70.7 bits (173), Expect = 3e-14
 Identities = 32/199 (16%), Positives = 52/199 (26%), Gaps = 20/199 (10%)

Query: 4   GIPLAHNTSARII-LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
           G           +     SLV  +      G Y+C A    G A+S  +  R  Y     
Sbjct: 45  GKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASP 104

Query: 63  S---DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV----GSERFSSGSR 115
           +   ++  I G        + C +    P     WK   SG   +        R ++G  
Sbjct: 105 AKTHEKTPIEG----RPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160

Query: 116 GS--MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSV 173
           G+      T     D     C A+NA   +    +   +                   S 
Sbjct: 161 GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 220

Query: 174 HISCTPGYDGGLPQTFTLE 192
            +    G          + 
Sbjct: 221 DMMAKAG------DVTMIY 233

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 69.6 bits (170), Expect = 6e-14
 Identities = 36/147 (24%), Positives = 49/147 (33%), Gaps = 19/147 (12%)

Query: 4   GIPLAHNTSARI----ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           G  +  N   RI      S + L+ +    +  G Y C   N  G+   + LKL V  AP
Sbjct: 250 GKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP 309

Query: 60  ----ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR 115
                 +   +V  G    + V I C V   P   +  W  N   + L  G    +    
Sbjct: 310 KYEQKPEKVIVVKQG----QDVTIPCKVTGLPAP-NVVWSHN--AKPLSGGRATVTDSG- 361

Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGT 142
              L    V   D G   C A N  G 
Sbjct: 362 ---LVIKGVKNGDKGYYGCRATNEHGD 385

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 64.5 bits (157), Expect = 4e-12
 Identities = 29/181 (16%), Positives = 59/181 (32%), Gaps = 23/181 (12%)

Query: 15  IILSNQSLVLQKVSRQSA---GTYKCSAINTKGEATSNQLKLRVKYAPICKSD---RIVI 68
               + +L    V+++       Y C+A N   +     ++  +K      S      V 
Sbjct: 156 TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVP 215

Query: 69  VGASRS------ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE---RFSSGSRGSML 119
              S+       +   I+C   ++P      +  N  G+ ++   E      + + G  L
Sbjct: 216 QYVSKDMMAKAGDVTMIYCMYGSNPMG-YPNYFKN--GKDVNGNPEDRITRHNRTSGKRL 272

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHIS 176
            +      D G  +C   N +G        ++ +   P   Q P+   +  +    V I 
Sbjct: 273 LFKTTLPEDEGVYTCEVDNGVGKPQK-HSLKLTVVSAPKYEQKPEK-VIVVKQGQDVTIP 330

Query: 177 C 177
           C
Sbjct: 331 C 331

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 18/132 (13%), Positives = 37/132 (28%), Gaps = 13/132 (9%)

Query: 53  LRVKYAPICK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER 109
           L V   P+ K   ++ +            + C +E +     + WK +  G++ +     
Sbjct: 1   LPVDKYPVLKDQPAEVLFREN----NPTVLECIIEGNDQGVKYSWKKD--GKSYNWQEHN 54

Query: 110 FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC--LYQVVLAGKPQPPQNCSVRN 167
            +       L +      D G   C A+   G   +      +  L   P      +   
Sbjct: 55  AALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPI- 113

Query: 168 ETTSSVHISCTP 179
                  + C  
Sbjct: 114 -EGRPFQLDCVL 124

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
             PL   +  R  +++  LV++ V     G Y C A N  G+       ++V
Sbjct: 347 AKPL---SGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFE-TLVQV 394

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 18/132 (13%), Positives = 30/132 (22%), Gaps = 18/132 (13%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGA 71
            I    Q     K +   +G Y C    T   + S+ + L V +    +         G 
Sbjct: 45  LIPTHTQPSYRFKANNNDSGEYTCQTGQT---SLSDPVHLTVLFEWLVLQTPHLEFQEG- 100

Query: 72  SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
              E++ + C    D P     +  N          +                     G 
Sbjct: 101 ---ETIMLRCHSWKDKPLVKVTFFQNG---------KSQKFSHLDPTFSIPQANHSHSGD 148

Query: 132 LSCAAQNAIGTQ 143
             C         
Sbjct: 149 YHCTGNIGYTLF 160

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 46.3 bits (110), Expect = 1e-06
 Identities = 5/39 (12%), Positives = 16/39 (41%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
            + +  + + +   +G Y C+        +S  + + V+
Sbjct: 132 LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 70.3 bits (172), Expect = 4e-14
 Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 8/142 (5%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVS----RQSAGTYKCSAINTKGEATSNQLKLRVKYAPI 60
             +A +    +   + +LV+   S     +  G Y+C A N  G A SN+++L+V  +P+
Sbjct: 58  FNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPL 117

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
              + +  V       + + C      P+    W  +          +R S G  G  L 
Sbjct: 118 WPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSS--SMEPITQDKRVSQGHNGD-LY 174

Query: 121 YTPVTELD-YGTLSCAAQNAIG 141
           ++ V   D     SC A+    
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFT 196

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 69.5 bits (170), Expect = 9e-14
 Identities = 32/189 (16%), Positives = 49/189 (25%), Gaps = 24/189 (12%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQ-SAGTYKCSAINTKGEAT--SNQLKLRVKYAPI 60
            +             N  L    V  Q     Y C+A           N   L+V     
Sbjct: 155 SMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRG 214

Query: 61  CKSDRIVIVG---------ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS 111
                   +            R   + + C     P      W         D+ S++  
Sbjct: 215 VAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTP-DIAWYKKGG----DLPSDKAK 269

Query: 112 SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNE 168
             +    LR T V+E D G   C A N +G+        V +   P     P+N  +   
Sbjct: 270 FENFNKALRITNVSEEDSGEYFCLASNKMGSIR--HTISVRVKAAPYWLDEPKNLILAPG 327

Query: 169 TTSSVHISC 177
                 + C
Sbjct: 328 --EDGRLVC 334

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 69.1 bits (169), Expect = 9e-14
 Identities = 32/142 (22%), Positives = 50/142 (35%), Gaps = 12/142 (8%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---I 60
           G  L  +  A+    N++L +  VS + +G Y C A N  G      + +RVK AP    
Sbjct: 260 GGDLPSD-KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRH-TISVRVKAAPYWLD 317

Query: 61  CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
              + I+  G    E   + C    +P   + +W  N  GE L       +    G  + 
Sbjct: 318 EPKNLILAPG----EDGRLVCRANGNPKP-TVQWMVN--GEPLQSAPPNPNREVAGDTII 370

Query: 121 YTPVTELDYGTLSCAAQNAIGT 142
           +            C   N  G 
Sbjct: 371 FRDTQISSRAVYQCNTSNEHGY 392

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 25/126 (19%), Positives = 46/126 (36%), Gaps = 19/126 (15%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-----RFSSGSRGS 117
            D IV       +++ I C  + +P   SF W  N      ++  +     R  SG+   
Sbjct: 25  KDHIVDPR----DNILIECEAKGNPAP-SFHWTRN--SRFFNIAKDPRVSMRRRSGTLVI 77

Query: 118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP----QPPQNCSVRNETTSSV 173
             R     E   G   C A+N  GT ++    ++ ++  P    +      V+    + +
Sbjct: 78  DFRSGGRPEEYEGEYQCFARNKFGTALS-NRIRLQVSKSPLWPKENLDPVVVQEG--APL 134

Query: 174 HISCTP 179
            + C P
Sbjct: 135 TLQCNP 140

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 4   GIPL-AHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
           G PL +   +    ++  +++ +     S   Y+C+  N  G   +N
Sbjct: 350 GEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLAN 396

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 68.3 bits (167), Expect = 5e-14
 Identities = 43/162 (26%), Positives = 61/162 (37%), Gaps = 23/162 (14%)

Query: 14  RIILSNQSLVLQKV-----SRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSD 64
           R++L + SL   ++     SR   G Y C A N  GEA S+   L V           SD
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD 120

Query: 65  RIVIVGASRSESVDIHC-AVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTP 123
            +V VG    E   + C      P   +  WK +  G  LD   ER +    G  L  T 
Sbjct: 121 VMVAVG----EPAVMECQPPRGHPEP-TISWKKD--GSPLDDKDERITIRG-GK-LMITY 171

Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQN 162
             + D G   C   N +G + +      VL  +P   +   +
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLE-RPSFVKAAAH 212

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 30/136 (22%), Positives = 47/136 (34%), Gaps = 22/136 (16%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER-------FSSGS- 114
           SD IV  G    E   ++C  E  P   + +W     GE ++   +          SGS 
Sbjct: 17  SDLIVSKG----EPATLNCKAEGRPTP-TIEWYKG--GERVETDKDDPRSHRMLLPSGSL 69

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTS 171
               + +   +  D G   C A+N +G  V+      V   +    Q P +  V      
Sbjct: 70  FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMV--AVGE 127

Query: 172 SVHISCTPGYDGGLPQ 187
              + C P    G P+
Sbjct: 128 PAVMECQPPR--GHPE 141

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 47.5 bits (113), Expect = 9e-07
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
            G PL      RI +    L++    +  AG Y C   N  GE  S   +L V   P
Sbjct: 149 DGSPLDDKDE-RITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERP 204

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 69.5 bits (170), Expect = 5e-14
 Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 22/168 (13%)

Query: 3   GGIPLAHNTSARII--LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQ--LKLRVKYA 58
             +P+  + S   I  L + +L ++       G Y+C A N+ G   S+   L +RV+  
Sbjct: 145 DFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNV 204

Query: 59  P----ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
                I      ++ G     +V+I C     P     KW      E L    +    G 
Sbjct: 205 APRFSILPMSHEIMPG----GNVNITCVAVGSPMPY-VKWMQG--AEDLT-PEDDMPVGR 256

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
                        D    +C A +++G        Q+ +   P+    
Sbjct: 257 ----NVLELTDVKDSANYTCVAMSSLGVIEAVA--QITVKSLPKAGTK 298

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 67.5 bits (165), Expect = 2e-13
 Identities = 38/197 (19%), Positives = 63/197 (31%), Gaps = 32/197 (16%)

Query: 4   GIPLAHNTSARIIL---SNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAP 59
           G  +       I     +   L +Q +        Y+C A N+ GE T +  KL V    
Sbjct: 44  GKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVH-AKLTVLRED 102

Query: 60  ICK----------SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-- 107
                          ++V        +  + CA   +P      W  +     +D  +  
Sbjct: 103 QLPSGFPNIDMGPQLKVVERT----RTATMLCAASGNPDP-EITWFKD--FLPVDPSASN 155

Query: 108 ERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC--LYQVVLAGKP---QPPQN 162
            R      G+ L+     E D G   C A N+ G + +    LY  V    P     P +
Sbjct: 156 GRIKQLRSGA-LQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMS 214

Query: 163 CSVRNETTSSVHISCTP 179
             +      +V+I+C  
Sbjct: 215 HEIM--PGGNVNITCVA 229

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 67.8 bits (166), Expect = 5e-14
 Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 20/161 (12%)

Query: 3   GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP- 59
            G  L  +   ++    +  +L +    ++  G Y C A N  GE  ++  KL ++  P 
Sbjct: 44  FGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETS-SKLLLQATPQ 102

Query: 60  -----ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--S 112
                  K      VG     ++ +H      P   +  W      + L   SE  +  +
Sbjct: 103 FHPGYPLKEKYYGAVG----STLRLHVMYIGRPVP-AMTWFHG--QKLLQN-SENITIEN 154

Query: 113 GSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVTPCLYQVV 152
               + L    V  +   G       N  GT       ++ 
Sbjct: 155 TEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 70.0 bits (171), Expect = 6e-14
 Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 15/183 (8%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADP------PARSFKWKFNNSGETLDVGSERFSSGSRG 116
              +V +      +    C ++          A    WK N    T+        + +  
Sbjct: 11  ESPVVQLH----SNFTAVCVLKEKCMDYFHVNANYIVWKTN--HFTIPKEQYTIINRT-A 63

Query: 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
           S + +T +  L+   L+C        +       ++    P+ P+N S        +   
Sbjct: 64  SSVTFTDIASLN-IQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCE 122

Query: 177 CTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK 236
              G +  L   FTL+    +           DTP     D      V + V +   NA 
Sbjct: 123 WDGGRETHLETNFTLK-SEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENAL 181

Query: 237 GRS 239
           G+ 
Sbjct: 182 GKV 184

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 55.4 bits (133), Expect = 4e-09
 Identities = 34/244 (13%), Positives = 74/244 (30%), Gaps = 15/244 (6%)

Query: 10  NTSARIILSNQSLVLQKVSRQSAGTYKCSAIN-TKGEATSNQLKLRVKYAPICKSDRIVI 68
                II    S V             C+ +   + E     + +     P  +  + + 
Sbjct: 53  KEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP--EKPKNLS 110

Query: 69  VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTEL 127
              +  + +        +     +F  K   +        +          + Y+ V  +
Sbjct: 111 CIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKF-ADCKAKRDTPTSCTVDYSTVYFV 169

Query: 128 DYGTLSCAAQNAIGT-QVTPCLYQVVLAGKPQPPQNCSVR--NETTSSVHISCTPGYDGG 184
           +   +   A+NA+G        +  V   KP PP N SV    E +S + ++ T      
Sbjct: 170 NI-EVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKS 228

Query: 185 LP-QTFTLELYSASDL---NLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL 240
           +    + ++  +        +    T     +FT++DL      + R+    +   G+  
Sbjct: 229 VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI--RCMKEDGKGY 286

Query: 241 PVIW 244
              W
Sbjct: 287 WSDW 290

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 68.0 bits (166), Expect = 1e-13
 Identities = 35/212 (16%), Positives = 62/212 (29%), Gaps = 24/212 (11%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGA 71
               S  S  +   S   +G Y+C    +     S+ ++L +      +  S R+   G 
Sbjct: 42  ATQTSTPSYRITSASVNDSGEYRCQRGLSGR---SDPIQLEIHRGWLLLQVSSRVFTEG- 97

Query: 72  SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
              E + + C    D    +  +  N          + F      S L          GT
Sbjct: 98  ---EPLALRCHAWKDKLVYNVLYYRNG---------KAFKFFHWNSNLTILKTNISHNGT 145

Query: 132 LSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT--SSVHISCTPGYDGGLPQTF 189
             C+            +   V    P P  N SV +     + V +SC       L Q  
Sbjct: 146 YHCSGMGKHRYTSAG-ISVTVKELFPAPVLNASVTSPLLEGNLVTLSCET---KLLLQRP 201

Query: 190 TLELYSASDLNLLVNLTNLDTPAFTLEDLGLD 221
            L+LY +  +          +  + +     +
Sbjct: 202 GLQLYFSFYMGSKTLRGRNTSSEYQILTARRE 233

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 64.6 bits (157), Expect = 2e-12
 Identities = 24/130 (18%), Positives = 39/130 (30%), Gaps = 15/130 (11%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRI-----VIVGAS 72
            N +L + K +    GTY CS +      TS  + + VK               ++ G  
Sbjct: 129 WNSNLTILKTNISHNGTYHCSGMGKHRY-TSAGISVTVKELFPAPVLNASVTSPLLEG-- 185

Query: 73  RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTL 132
               V + C  +        +  F+        GS+     +  S  +       D G  
Sbjct: 186 --NLVTLSCETKLLLQRPGLQLYFSFYM-----GSKTLRGRNTSSEYQILTARREDSGLY 238

Query: 133 SCAAQNAIGT 142
            C A    G 
Sbjct: 239 WCEAATEDGN 248

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 68.9 bits (168), Expect = 1e-13
 Identities = 18/150 (12%), Positives = 43/150 (28%), Gaps = 13/150 (8%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-ICKSDRIVIVGAS 72
           R ++      +  V+R   G Y CS+     ++      + +     I  ++        
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSA----LVTIVEKGFINATNSSEDYEID 339

Query: 73  RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTL 132
           + E        +A P  R   W F+   ++             G  +      +   G  
Sbjct: 340 QYEEFCFSVRFKAYPQIR-CTWTFS--RKSF---PCEQKGLDNGYSISKFCNHKHQPGEY 393

Query: 133 SCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
              A+N         ++ + +    +   +
Sbjct: 394 IFHAENDDAQFT--KMFTLNIRSGTKHHHH 421

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 62.0 bits (150), Expect = 2e-11
 Identities = 27/229 (11%), Positives = 61/229 (26%), Gaps = 24/229 (10%)

Query: 4   GIPLAHNTSARII-LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
              L       +      S+V+ K++   AG Y     +     T     + ++   +  
Sbjct: 86  HSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTI-LFTVSIRNTLLYT 144

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
             R             + C  E+ P     +W   +  +      E  +   +       
Sbjct: 145 LRRPYFRKM--ENQDALVCISESVPEP-IVEWVLCD-SQGESCKEESPAVVKKEE-KVLH 199

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGY- 181
            +   D     C A+N +G + T      +            ++      + I C   + 
Sbjct: 200 ELFGTDI---RCCARNELGRECTRLFTIDLNQTPQTTLPQLFLK--VGEPLWIRCKAVHV 254

Query: 182 -----------DGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLG 219
                      +  L +    E+ + S    ++ +      +    D G
Sbjct: 255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG 303

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 48.5 bits (115), Expect = 9e-07
 Identities = 27/180 (15%), Positives = 44/180 (24%), Gaps = 32/180 (17%)

Query: 27  VSRQSAGTYKCSAINTKGEATS----------------NQLKLRVKYAPICKSDRIVIVG 70
              Q     KC  IN K   +S                    LR + +        V V 
Sbjct: 2   TGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV- 60

Query: 71  ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG 130
              S S+ +   V+A     S  W F     +L+              +    +TE   G
Sbjct: 61  -DVSASITLQVLVDAPGNI-SCLWVFK--HSSLNCQPHFDLQNRGVVSMVILKMTETQAG 116

Query: 131 TLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISCTPGYDGGLPQ 187
                 Q+         L+ V +                    +   + C       +P+
Sbjct: 117 EYLLFIQSEATN--YTILFTVSIRNTLLYTLRRPYFRKMENQDA---LVCIS---ESVPE 168

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 7/48 (14%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 12  SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
             + + +  S+      +   G Y   A N   + T     L ++   
Sbjct: 370 EQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTK-MFTLNIRSGT 416

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 68.2 bits (166), Expect = 1e-13
 Identities = 22/123 (17%), Positives = 36/123 (29%), Gaps = 8/123 (6%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRVKYAPICKSDRIVIVGASRSESVDI 79
             +L   S+       C   +   E      + L V Y P                   +
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237

Query: 80  HCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA 139
            C   ++P    + W           G     + ++G+ L   PV +    TL C   NA
Sbjct: 238 TCDARSNPEPTGYNWSTTM-------GPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNA 290

Query: 140 IGT 142
           +G 
Sbjct: 291 LGA 293

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 60.9 bits (147), Expect = 5e-11
 Identities = 25/139 (17%), Positives = 45/139 (32%), Gaps = 11/139 (7%)

Query: 11  TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIV 67
                 L N SL +  +  +  G Y C  +     + S  + LRV   P          +
Sbjct: 70  ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQL 129

Query: 68  IVGASRSESVDIHC-AVEADPPARSFKWKFNNSGETLDVGSERFSSG--SRGSMLRYTPV 124
                        C +    PPA+   W  +  G         F SG  +  S+    P 
Sbjct: 130 TGE----PVPMARCVSTGGRPPAQ-ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS 184

Query: 125 TELDYGTLSCAAQNAIGTQ 143
           +++D   ++C  ++    +
Sbjct: 185 SQVDGKNVTCKVEHESFEK 203

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 12  SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
               +     L+++ V +    T  C+  N  G   + +L ++V
Sbjct: 260 PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGARQA-ELTVQV 302

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 67.8 bits (165), Expect = 2e-13
 Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 17/155 (10%)

Query: 1   MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP- 59
              G  L  + +          +            +C+A        S++  L+V+ A  
Sbjct: 127 ECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIK 186

Query: 60  ------ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG 113
                 + ++  ++  G    ++  + C ++    + +  W   N         +  S  
Sbjct: 187 AIPVVSVPETSHLLKKG----DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWH 242

Query: 114 S------RGSMLRYTPVTELDYGTLSCAAQNAIGT 142
                  R   L  +     D G   C A N  G+
Sbjct: 243 RGDFNYERQETLTISSARVDDSGVFMCYANNTFGS 277

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 61.3 bits (148), Expect = 3e-11
 Identities = 22/174 (12%), Positives = 42/174 (24%), Gaps = 18/174 (10%)

Query: 12  SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIVI 68
           +  +       + +K      GTY CS  N    +      + V+      +        
Sbjct: 49  NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIY----VFVRDPAKLFLVGLPLFGK 104

Query: 69  VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
                     + C +  DP    +     + G++L      F    +  +          
Sbjct: 105 ED----SDALVRCPL-TDPQVSQYSLIECD-GKSLPTDL-TFVPNPKAGITIKNVKRAYH 157

Query: 129 YGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SSVHISCT 178
              + CAAQ       +      V       P               +  + CT
Sbjct: 158 RLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCT 211

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 65.9 bits (160), Expect = 3e-13
 Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 11/139 (7%)

Query: 8   AHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSD 64
            H TS  +   + S+ +  +     GTY+C      G A      L V   P    C  D
Sbjct: 72  VHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK-FLLTVLVKPSGTRCFVD 130

Query: 65  RIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPV 124
               +G        + C  +       F+W+  +  +T+      + +     ++     
Sbjct: 131 GSEEIG----NDFKLKCEPKEGSLPLQFEWQKLSDSQTM---PTPWLAEMTSPVISVKNA 183

Query: 125 TELDYGTLSCAAQNAIGTQ 143
           +    GT SC  QN +G+ 
Sbjct: 184 SSEYSGTYSCTVQNRVGSD 202

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 38.5 bits (89), Expect = 9e-04
 Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
                   T     +++  + ++  S + +GTY C+  N  G      L+L V
Sbjct: 159 LSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCM-LRLDV 210

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 66.1 bits (161), Expect = 3e-13
 Identities = 33/167 (19%), Positives = 51/167 (30%), Gaps = 26/167 (15%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK--------SDR 65
           ++   + SL+++ V     G Y C   N  G        L V      +        ++ 
Sbjct: 70  KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT-YHLDVVERSRHRPILQAGLPANA 128

Query: 66  IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGET----------LDVGSERFSSGSR 115
             +VG      V+  C V +D      +W  +               L V      + S 
Sbjct: 129 STVVG----GDVEFVCKVYSDAQPH-IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183

Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
             +L    VTE D G   C   N IG         + +  K Q P  
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQ--ANQSAWLTVLPKQQAPGR 228

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 25/148 (16%), Positives = 43/148 (29%), Gaps = 14/148 (9%)

Query: 39  AINTKGEATSNQLKLR-VKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN 97
           A +   E ++N+          + K    V        +V   C    +P   + +W  N
Sbjct: 2   AEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAA----NTVKFRCPAGGNPMP-TMRWLKN 56

Query: 98  NSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP 157
                 +     +   ++   L    V   D G  +C  +N  G+        VV   + 
Sbjct: 57  GKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRH 116

Query: 158 QP------PQNCSVRNETTSSVHISCTP 179
           +P      P N S        V   C  
Sbjct: 117 RPILQAGLPANASTVVG--GDVEFVCKV 142

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 67.1 bits (163), Expect = 4e-13
 Identities = 30/197 (15%), Positives = 54/197 (27%), Gaps = 30/197 (15%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
              P++   ++RI    + L       + +G Y C   N+        +  +        
Sbjct: 45  SKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK-ISAKFVENEPNL 103

Query: 63  S-------DRIVIVGASRSESVDIHCAVEADPPAR-----SFKWKFNNSGETLDVGSERF 110
                    + + V         + C                +W  +   + L + +  F
Sbjct: 104 CYNAQAIFKQKLPVA----GDGGLVCPYMEFFKNENNELPKLQWYKD--CKPLLLDNIHF 157

Query: 111 SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC----LYQVVLAGKPQPPQNCSVR 166
           S       L    V E   G  +C A      +  P      +  +   KP  P   S  
Sbjct: 158 SGV--KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPA 215

Query: 167 NETT-----SSVHISCT 178
           NET      S + + C 
Sbjct: 216 NETMEVDLGSQIQLICN 232

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 62.0 bits (150), Expect = 2e-11
 Identities = 24/160 (15%), Positives = 42/160 (26%), Gaps = 22/160 (13%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN---QLKLRVKYAP 59
              PL    +         L++  V+ +  G Y C A  T           ++       
Sbjct: 146 DCKPL-LLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204

Query: 60  ICKSDRIV-----IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF---- 110
                 IV      +       + + C V          WK+N S    D          
Sbjct: 205 KPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPVLGEDYYS 263

Query: 111 -------SSGSRGSMLRYTPVTELDY-GTLSCAAQNAIGT 142
                     +  ++L  + +    Y    +C A+N  G 
Sbjct: 264 VENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI 303

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 18/125 (14%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 58  APICKS-DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG 116
           A  CK  +  +I+ +S +E     C +  +    +  W  ++S   +           + 
Sbjct: 3   ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62

Query: 117 SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT----SS 172
             L + P    D G   C  +N+    +   +    +  +P    N     +        
Sbjct: 63  K-LWFVPAKVEDSGHYYCVVRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD 120

Query: 173 VHISC 177
             + C
Sbjct: 121 GGLVC 125

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 65.0 bits (158), Expect = 4e-13
 Identities = 30/149 (20%), Positives = 48/149 (32%), Gaps = 22/149 (14%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
           GG+ L  +      L  Q    +  S    G Y C  +       +    +++   P   
Sbjct: 37  GGVVLKEDA-----LPGQKTEFKVDSDDQWGEYSCVFLPEPMGTAN----IQLHGPPRVK 87

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG---SERFSSGSRG 116
             KS   +  G    E+  + C  E+ PP   + W      E   +      RF   S  
Sbjct: 88  AVKSSEHINEG----ETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143

Query: 117 --SMLRYTPVT-ELDYGTLSCAAQNAIGT 142
             S L    +  E D G   C   ++ G+
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGS 172

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 8/84 (9%), Positives = 19/84 (22%), Gaps = 9/84 (10%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
           +  +          + + C++          +W     G  L            G    +
Sbjct: 2   AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKG--GVVLK------EDALPGQKTEF 53

Query: 122 TPVTELDYGTLSCAAQNAIGTQVT 145
              ++  +G  SC           
Sbjct: 54  KVDSDDQWGEYSCVFLPEPMGTAN 77

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 64.8 bits (158), Expect = 8e-13
 Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 29/178 (16%)

Query: 4   GIPLAHNTSARIILSN---QSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAP 59
           G  +++     I   +     L +Q +        Y+C A N  GE + +  +L V    
Sbjct: 44  GKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVS-TRLTVLRED 102

Query: 60  ICKS----------DRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE- 108
                          ++V        +  + CA   +P      W  +     +D  +  
Sbjct: 103 QIPRGFPTIDMGPQLKVVERT----RTATMLCAASGNPDP-EITWFKD--FLPVDTSNNN 155

Query: 109 ----RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
               +  S S G+ L+     E D G   C A N+ GT+ +     + + G      +
Sbjct: 156 GRIKQLRSESIGA-LQIEQSEESDQGKYECVATNSAGTRYS-APANLYVRGTKHHHHH 211

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 65.7 bits (160), Expect = 1e-12
 Identities = 32/197 (16%), Positives = 64/197 (32%), Gaps = 18/197 (9%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK- 62
              ++ +          +L++ + S++ AG Y+    + +G+  S +LKL  +       
Sbjct: 45  EREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVDEAFKELMM 103

Query: 63  --SDRIVIVGA-----SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR 115
               +I +        S +E + ++  V          W  N  G  +   S+R  +G  
Sbjct: 104 EVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHN--GSAIRY-SDRVKTGVT 160

Query: 116 GSM--LRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSV 173
           G    L+    T  D G       +              L+G+         +    +++
Sbjct: 161 GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV----DLSGQAYDEAYAEFQRLKQAAI 216

Query: 174 HISCTPGYDGGLPQTFT 190
                    GGLP   T
Sbjct: 217 AEKNRARVLGGLPDVVT 233

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 22/164 (13%), Positives = 51/164 (31%), Gaps = 30/164 (18%)

Query: 4   GIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
           G  + ++   +  ++ +   L + + +    G Y     + K       + L  +     
Sbjct: 146 GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEA 204

Query: 62  KSDRIVIVGASRSE--------------------SVDIHCAVEADPPARSFKWKFNNSGE 101
            ++   +  A+ +E                    ++++ C V  DPP     W  N   +
Sbjct: 205 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKN--EK 261

Query: 102 TLDVGSERFS---SGSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
            L    +  +      R +      V+  D G      +N  G+
Sbjct: 262 AL-ASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 304

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 39.1 bits (91), Expect = 7e-04
 Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 5/60 (8%)

Query: 3   GGIPLAHNTSARIILS---NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
               LA +    +           +  VS   +G Y     N  G  TS    + V + P
Sbjct: 259 NEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS-DFTVSV-FIP 316

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 32/195 (16%), Positives = 58/195 (29%), Gaps = 22/195 (11%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQS------AGTYKCSAINTKGEATSNQLKLRVK 56
            G  +      R I S+  LV      +       A  Y C A N  G   S  + +R  
Sbjct: 42  DGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAV 101

Query: 57  YAPICKSDRIVIVGASRSESVDIHCAVEADP--PARSFKWKFNNS--GETLDVGSERFSS 112
            A   ++D        R  S  I C + +          W  +             ++  
Sbjct: 102 VAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 160

Query: 113 GSRGSMLRYTPVTELD-YGTLSCAAQNAIG--TQVTPCLYQVVL---AGKPQPPQNCSVR 166
              G  L    V   D Y +  C  ++ +   T+++    ++V+        P     V+
Sbjct: 161 LPSGE-LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQ 219

Query: 167 NETT----SSVHISC 177
                    ++ + C
Sbjct: 220 KPLELMVAHTISLLC 234

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 63.4 bits (154), Expect = 9e-12
 Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 20/134 (14%)

Query: 12  SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIVI 68
           + R+   + +L+++    + +G Y C   N+ G  +  +  L V       I    + V 
Sbjct: 262 NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV-ETVLTVTAPLSAKIDPPTQTVD 320

Query: 69  VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
            G          C    +P   +  W  +  G+ +             S+LR   V + D
Sbjct: 321 FG----RPAVFTCQYTGNPIK-TVSWMKD--GKAIG---------HSESVLRIESVKKED 364

Query: 129 YGTLSCAAQNAIGT 142
            G   C  +N   +
Sbjct: 365 KGMYQCFVRNDRES 378

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 18/187 (9%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQ-SAGTYKCSAINTKGEAT--SNQLKLRVKYAPIC 61
            P A      ++L +  L +++V  +    +Y+C   +     T  S      V   PI 
Sbjct: 149 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS 208

Query: 62  KSDRIVIVGASRS------ESVDIHCAVEADPPARSFKW-KFNNSGETLDVGSERFSSGS 114
            S         +        ++ + C  +  P   SF+W KF                  
Sbjct: 209 SSAPRTPALVQKPLELMVAHTISLLCPAQGFPAP-SFRWYKFIEGTTRKQAVVLNDRVKQ 267

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTS 171
               L        D G   C   N++G +       + +         P   +V      
Sbjct: 268 VSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE--TVLTVTAPLSAKIDPPTQTVDFG--R 323

Query: 172 SVHISCT 178
               +C 
Sbjct: 324 PAVFTCQ 330

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 19/127 (14%), Positives = 35/127 (27%), Gaps = 13/127 (10%)

Query: 69  VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML-----RYTP 123
           +  S S   +I C    +P      W  ++ G  +          S G ++         
Sbjct: 14  IDFSNSTGAEIECKASGNPMP-EIIWIRSD-GTAVGDVPGLRQISSDGKLVFPPFRAEDY 71

Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP---QPPQNCSVRNETTSSVHISCTPG 180
             E+     +C A+N  G+ ++  +  V                V     +S  I C   
Sbjct: 72  RQEVHAQVYACLARNQFGSIISRDV-HVRAVVAQYYEADVNKEHV--IRGNSAVIKCLIP 128

Query: 181 YDGGLPQ 187
                  
Sbjct: 129 SFVADFV 135

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 63.2 bits (154), Expect = 2e-12
 Identities = 32/149 (21%), Positives = 56/149 (37%), Gaps = 17/149 (11%)

Query: 4   GIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRVKYA 58
           G  ++ +T   + +S       L +  V++ ++G Y   A N  G+ATS  +L ++ + A
Sbjct: 43  GQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102

Query: 59  P--ICK--SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSG 113
           P    +      V  G      V +   V   P     K+  +  G  +    + + S  
Sbjct: 103 PPNFVQRLQSMTVRQG----SQVRLQVRVTGIPTP-VVKFYRD--GAEIQSSLDFQISQE 155

Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
                L        D GT S  A N++G 
Sbjct: 156 GDLYSLLIAEAYPEDSGTYSVNATNSVGR 184

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 3   GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
            G  +  +   +I       SL++ +   + +GTY  +A N+ G ATS   +L V+
Sbjct: 140 DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS-TAELLVQ 194

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 64.8 bits (157), Expect = 3e-12
 Identities = 25/183 (13%), Positives = 53/183 (28%), Gaps = 22/183 (12%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73
           + I   ++L + ++  Q +GT+ C+ +  + +     + + V       S      G   
Sbjct: 136 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK-IDIVVLAFQKASSIVYKKEGEQV 194

Query: 74  SESVDIHCAVEADPPARSFKWKFNNSGE-------TLDVGSERFSSGSRGSMLRYTPVTE 126
             S  +   VE    +    W+   +          L          ++   L+      
Sbjct: 195 EFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLP 254

Query: 127 L------------DYGTLSCAAQNAIGT-QVTPCLYQVVLAGKPQPPQNCSVRNETTSSV 173
           L              G L+ A +   G       L  +      +    C V   T+  +
Sbjct: 255 LHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLT-CEVWGPTSPKL 313

Query: 174 HIS 176
            +S
Sbjct: 314 MLS 316

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 28/180 (15%), Positives = 51/180 (28%), Gaps = 29/180 (16%)

Query: 3   GGIPLAHNTSARIIL---SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           G   L     +R  L    N  L+++ +  + + TY C   + K E       L      
Sbjct: 47  GPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---- 102

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
              SD  ++ G    +S+ +           S + +           S R  +   G  L
Sbjct: 103 --NSDTHLLQG----QSLTLTLESPPGSSP-SVQCR-----------SPRGKNIQGGKTL 144

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTP 179
             + +   D GT +C                +V+    +       +      V  S   
Sbjct: 145 SVSQLELQDSGTWTCTVLQNQKKVEFK--IDIVVLAFQKASSIVYKKEGEQ--VEFSFPL 200

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 62.2 bits (151), Expect = 3e-12
 Identities = 24/147 (16%), Positives = 44/147 (29%), Gaps = 22/147 (14%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGASRSE 75
           +N SL +     + +G YKC          S  + L V      +  S  +V+ G    +
Sbjct: 49  TNSSLNIVNAKFEDSGEYKCQHQQV---NESEPVYLEVFSDWLLLQASAEVVMEG----Q 101

Query: 76  SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA 135
            + + C    +       +  +          E          +  T  T  D GT  C 
Sbjct: 102 PLFLRCHGWRNWDVYKVIYYKDG---------EALKYWYENHNISITNATVEDSGTYYCT 152

Query: 136 AQNAIGTQVTPCLYQVVLAGKPQPPQN 162
            +       +  L   V+    + P+ 
Sbjct: 153 GKVWQLDYESEPLNITVI----KAPRE 175

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 10  NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
             + +    N ++ +   + + +GTY C+    + +  S  L + V  AP  K
Sbjct: 124 GEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPREK 176

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 62.6 bits (152), Expect = 4e-12
 Identities = 16/145 (11%), Positives = 35/145 (24%), Gaps = 18/145 (12%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC--KSDRIVIVGASRSE 75
              S  +   +   +G Y+C    +     S+ ++L V    +       +        +
Sbjct: 52  QASSYFIDAATVDDSGEYRCQTQLSTL---SDPVQLEVHIGWLLLQAPRWVFKEE----D 104

Query: 76  SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA 135
            + + C    +       +  N  G                S       T  D G+  C 
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGKG---------RKYFHHNSDFYIPKATLKDSGSYFCR 155

Query: 136 AQNAIGTQVTPCLYQVVLAGKPQPP 160
                    +  +   +  G     
Sbjct: 156 GLVGSKNVSSETVQITITQGLAVST 180

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 6/51 (11%), Positives = 19/51 (37%)

Query: 9   HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           +    +    N    + K + + +G+Y C  +      +S  +++ +    
Sbjct: 126 NGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 62.6 bits (152), Expect = 4e-12
 Identities = 32/148 (21%), Positives = 53/148 (35%), Gaps = 18/148 (12%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
            G+ L   T+ R   SN    + K   + +G Y C   +      +N   + VK AP   
Sbjct: 42  NGVEL---TATRKNASNMEYRINKPRAEDSGEYHCVY-HFVSAPKAN-ATIEVKAAPDIT 96

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG--SERF--SSGSR 115
             K       G    +   ++C     P    + W+   +G   ++   S RF   +   
Sbjct: 97  GHKRSENKNEG----QDAMMYCKSVGYPHP-EWMWRKKENGVFEEISNSSGRFFIINKEN 151

Query: 116 GSMLRYTPV-TELDYGTLSCAAQNAIGT 142
            + L    +    D G   C A N+IG+
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGS 179

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 12/84 (14%), Positives = 18/84 (21%), Gaps = 11/84 (13%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
              I          V + C + +         W  N  G  L    +  S+       R 
Sbjct: 11  EVIIRDSL----LPVTLQCNLTSSSHTLMYSYWTKN--GVELTATRKNASNME----YRI 60

Query: 122 TPVTELDYGTLSCAAQNAIGTQVT 145
                 D G   C        +  
Sbjct: 61  NKPRAEDSGEYHCVYHFVSAPKAN 84

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 63.9 bits (155), Expect = 5e-12
 Identities = 32/207 (15%), Positives = 54/207 (26%), Gaps = 38/207 (18%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV-------- 55
           G  L    S R+++  Q L +   S + +G Y C    T+       +++          
Sbjct: 47  GTGL--VPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDE 104

Query: 56  -------------------KYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKF 96
                              +   + K    V        +V   C    +P   S  W  
Sbjct: 105 DGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAA----NTVRFRCPAAGNPTP-SISWLK 159

Query: 97  NNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK 156
           N      +          +   L    V   D G  +C  +N  G+        V+    
Sbjct: 160 NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP 219

Query: 157 PQPPQNCSVRNETT----SSVHISCTP 179
            +P     +    T    S V   C  
Sbjct: 220 HRPILQAGLPANQTAVLGSDVEFHCKV 246

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 26/149 (17%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK--------SDR 65
           ++     SLV++ V     G Y C   N  G        L V      +        +++
Sbjct: 174 KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQ 232

Query: 66  IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSG------------ETLDVGSERFSSG 113
             ++G      V+ HC V +D      +W  +                T+   +   ++ 
Sbjct: 233 TAVLG----SDVEFHCKVYSDAQP-HIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTD 287

Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
               +L    VT  D G  +C A N+IG 
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGF 316

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 62.8 bits (152), Expect = 1e-11
 Identities = 18/126 (14%), Positives = 34/126 (26%), Gaps = 14/126 (11%)

Query: 27  VSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-----ICKSDRIVIVGASRSESVDIHC 81
                  +Y C       E  S+   +           +     +V  G    E++ + C
Sbjct: 148 SGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQG----ENITLMC 203

Query: 82  AVEADPPARSFKWKFNNSGETLDVGSERFSSGS----RGSMLRYTPVTELDYGTLSCAAQ 137
            V  +    +F+W +        V               S+L        D GT +C   
Sbjct: 204 IVIGNEVV-NFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVT 262

Query: 138 NAIGTQ 143
            ++   
Sbjct: 263 ESVNDH 268

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 22/183 (12%), Positives = 48/183 (26%), Gaps = 19/183 (10%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
              P      A+    +  L L  ++    G Y C+  +++G  T  + +L +       
Sbjct: 34  SQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTV 93

Query: 60  --ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGS 117
             +      + +  +    + I C V  DP               L V  +         
Sbjct: 94  GFLPNDAEELFIFLTEITEITIPCRVT-DPQLV-VTLHEKKGDVALPVPYD--------- 142

Query: 118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT--SSVHI 175
             +       +  +  C          +   Y   L          +V+       ++ +
Sbjct: 143 -HQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITL 201

Query: 176 SCT 178
            C 
Sbjct: 202 MCI 204

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 61.9 bits (150), Expect = 1e-11
 Identities = 37/180 (20%), Positives = 57/180 (31%), Gaps = 28/180 (15%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK--------SDR 65
           ++     SLV++ V     G Y C   N  G        L V      +        +++
Sbjct: 66  KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQ 124

Query: 66  IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSERFSSGS 114
             ++G      V+ HC V +D      +W  +       V            S    S  
Sbjct: 125 TAVLG----SDVEFHCKVYSDAQPH-IQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVH 174
               LR   V+E D G   C A N IG       + + + G     +   V  +   SVH
Sbjct: 180 ADVRLRLANVSERDGGEYLCRATNFIGV--AEKAFWLSVHGPRAAEEE-LVEADEAGSVH 236

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD 64
           + +  +  +  + ++  L L  VS +  G Y C A N  G A      L V        +
Sbjct: 167 VTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA-FWLSVHGPRA-AEE 224

Query: 65  RIVIVGASRSESVDIHC 81
            +V       E+  +H 
Sbjct: 225 ELVEAD----EAGSVHH 237

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 21/129 (16%), Positives = 33/129 (25%), Gaps = 9/129 (6%)

Query: 55  VKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGS 114
            +   + K    V        +V   C    +P   S  W  N      +          
Sbjct: 15  TRPERMDKKLLAVPAA----NTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRH 69

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETT---- 170
           +   L    V   D G  +C  +N  G+        V+     +P     +    T    
Sbjct: 70  QQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG 129

Query: 171 SSVHISCTP 179
           S V   C  
Sbjct: 130 SDVEFHCKV 138

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 62.3 bits (151), Expect = 1e-11
 Identities = 18/163 (11%), Positives = 42/163 (25%), Gaps = 23/163 (14%)

Query: 3   GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
               +      ++ +        + ++K+  +  GTY     + K    S  + +   + 
Sbjct: 145 NEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK 204

Query: 59  PICKSDRIVIVGASRS----------------ESVDIHCAVEADPPARSFKWKFNNSGET 102
            + K          R                  +V + C V          W  +     
Sbjct: 205 KLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKD--ERE 262

Query: 103 LDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145
           +    E+         L  T  ++ D G      ++  G   +
Sbjct: 263 IS-VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS 304

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 60.0 bits (145), Expect = 8e-11
 Identities = 21/174 (12%), Positives = 44/174 (25%), Gaps = 17/174 (9%)

Query: 4   GIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
            +    +    +        +  + +     G Y C   +T G A+S  +        + 
Sbjct: 40  YVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLA 99

Query: 62  KSDRIVI----------VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE--- 108
            S               V       V      E         + FN   + +  G +   
Sbjct: 100 LSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN--EKEIFEGPKYKM 157

Query: 109 RFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQN 162
                +    +    + + D GT +   Q+   T  +  +    +  K Q    
Sbjct: 158 HIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAE 211

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
               ++ +          +L++ + S++ AG Y+    + +G+  S +LKL  +
Sbjct: 259 DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVDE 311

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 62.9 bits (152), Expect = 2e-11
 Identities = 29/227 (12%), Positives = 69/227 (30%), Gaps = 16/227 (7%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESV 77
           +   ++ + ++    G      +   G   +                RI  V  +  +  
Sbjct: 133 NFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL----------RIQNVEVNAGQFA 182

Query: 78  DIHCAVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA 136
              C+      A      +  +  +      +  SS    +       T+ D G   C  
Sbjct: 183 TFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI 242

Query: 137 QNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPG-YDGGLP-QTFTLELY 194
           +   G  ++    ++V+   P P     + +   + + I       +G  P     +E  
Sbjct: 243 RTEGGVGISN-YAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYC 301

Query: 195 SASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
           +AS      +   +D+ ++ +  L  D    + V+++     G   P
Sbjct: 302 TASGSW--NDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSP 346

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 49.0 bits (116), Expect = 7e-07
 Identities = 37/251 (14%), Positives = 81/251 (32%), Gaps = 28/251 (11%)

Query: 6   PLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR 65
           PL             S  +   +++ AG Y+C      G   SN  +L VK  P+  +  
Sbjct: 209 PLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPP 268

Query: 66  IVIVGASRSESVDIHC-AVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPV 124
            +    +    + ++  ++  D P  + + ++  +  +       ++         Y  +
Sbjct: 269 QLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGS-------WNDRQPVDSTSYK-I 320

Query: 125 TEL----DYGTLSCAAQNAI----GTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
             L    +Y  +S           G+       +   A   + P+   V    +  + I 
Sbjct: 321 GHLDPDTEY-EISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIR 379

Query: 177 -CTPGYDGGLPQTFTLELY-------SASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRV 228
               GY+     ++ L ++              +   T    P  T+ +L    T  + V
Sbjct: 380 WEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNL-SPYT-NVSV 437

Query: 229 VISGVNAKGRS 239
            +  +N +GR 
Sbjct: 438 KLILMNPEGRK 448

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 21/164 (12%), Positives = 45/164 (27%), Gaps = 23/164 (14%)

Query: 4   GIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATS------NQLKL 53
              +      ++ +        + ++K+  +  GTY     + K    S      +  K 
Sbjct: 41  EKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKK 100

Query: 54  RVKYAPICKSDRIVIVG----------ASRSESVDIHCAVEADPPARSFKWKFNNSGETL 103
             K A   + + I   G           +   +V + C V          W  +     +
Sbjct: 101 LQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKD--EREI 158

Query: 104 DVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC 147
               E+         L  T  ++ D G      ++  G   +  
Sbjct: 159 S-VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 201

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 42.2 bits (99), Expect = 4e-05
 Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
               ++ +          +L++ + S++ AG Y+    + +G+  S +LKL  +
Sbjct: 154 DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKS-RLKLVDE 206

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 60.6 bits (146), Expect = 3e-11
 Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 20/158 (12%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK------SDRIVIVGA 71
           S +   +       AG   C A        S    + V    I            + VG 
Sbjct: 62  SKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVG- 120

Query: 72  SRSESVDIHCAVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSRGSMLRYT-------P 123
              E + ++C    +      F W++ +S         R      GS ++          
Sbjct: 121 ---EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177

Query: 124 VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
           VT  D G  +CAA + + T+      +V     P   +
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNSTFVRVH--EDPIEGR 213

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 59.9 bits (145), Expect = 4e-11
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 22/150 (14%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK-- 62
           + +  +    +  +N +L +  V     G Y C   +     +     + +   P     
Sbjct: 51  VFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTK 110

Query: 63  ----------SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS 112
                      D   ++G    ++V + C    +P     +W+     E +   +   S+
Sbjct: 111 PYPADIVVQFKDVYALMG----QNVTLECFALGNPVPD-IRWRKV--LEPMP-STAEIST 162

Query: 113 GSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
              G++L+   +   D G   C A+N  G 
Sbjct: 163 S--GAVLKIFNIQLEDEGIYECEAENIRGK 190

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 23/125 (18%), Positives = 41/125 (32%), Gaps = 15/125 (12%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
            +  V  G    + + + C      P   S++W  N     + +   RF S + G+ L  
Sbjct: 16  PEVRVKEG----KGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN-LYI 70

Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL-----AGKPQPPQNCSVRNETT----SS 172
             V   D G  SC   +   T+     +  ++       KP P        +       +
Sbjct: 71  ANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQN 130

Query: 173 VHISC 177
           V + C
Sbjct: 131 VTLEC 135

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 11  TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATS 48
           ++A I  S   L +  +  +  G Y+C A N +G+   
Sbjct: 156 STAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKH 193

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 58.0 bits (140), Expect = 1e-10
 Identities = 14/128 (10%), Positives = 30/128 (23%), Gaps = 18/128 (14%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGASRSE 75
              S  +   +   +G Y+C    +     S+ ++L V      +     +        +
Sbjct: 52  QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEE----D 104

Query: 76  SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA 135
            + + C    +       +  N                   S       T  D G+  C 
Sbjct: 105 PIHLRCHSWKNTALHKVTYLQNGK---------DRKYFHHNSDFHIPKATLKDSGSYFCR 155

Query: 136 AQNAIGTQ 143
                   
Sbjct: 156 GLVGSKNV 163

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 7/41 (17%), Positives = 17/41 (41%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
            N    + K + + +G+Y C  +      +S  + + +  A
Sbjct: 135 HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQA 175

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 58.6 bits (141), Expect = 1e-10
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 13/147 (8%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV---KYAP 59
             I    N       +  +L +  VS  +  +Y C+A     +     +++ +      P
Sbjct: 37  TQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVEIYSFPKDP 95

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPAR--SFKWKFNN---SGETLDVGSERFSSGS 114
                  +  G    + + + C+V    P           +     +     ++R S  +
Sbjct: 96  EIHLSGPLEAG----KPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLET 151

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIG 141
           +   + +TPV E     L C A+  I 
Sbjct: 152 KSLEVTFTPVIEDIGKVLVCRAKLHID 178

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 59.9 bits (144), Expect = 2e-10
 Identities = 28/181 (15%), Positives = 49/181 (27%), Gaps = 21/181 (11%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGASR 73
            N   V +  + Q      C +    G++T+    L V + P    +        VG   
Sbjct: 46  GNNRKVYELSNVQEDSQPMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVG--- 101

Query: 74  SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
            +++ + C VE   P  +         + L    E                 +      S
Sbjct: 102 -KNLTLRCQVEGGAPRANLTVVLLRGEKELK--REPAVGEPAEVTTTVLVRRDHHGANFS 158

Query: 134 CAAQNAIGTQ--------VTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGL 185
           C  +  +  Q          P   Q  +     P        E  +   + C+   DG  
Sbjct: 159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCS--LDGLF 216

Query: 186 P 186
           P
Sbjct: 217 P 217

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 57.2 bits (137), Expect = 1e-09
 Identities = 23/149 (15%), Positives = 39/149 (26%), Gaps = 27/149 (18%)

Query: 11  TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT---SNQLKLRVKYAPI-----CK 62
             A+ +     L+L+     +  ++ CSA           +   +LRV Y P      C 
Sbjct: 318 VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP 377

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
            +                C    +P     K   + +                  +    
Sbjct: 378 GNWTWPEN----SQQTPMCQAWGNPLP-ELKCLKDGTFPL--------------PIGESV 418

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQV 151
            VT    GT  C A++  G         V
Sbjct: 419 TVTRDLEGTYLCRARSTQGEVTREVTVNV 447

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 48.3 bits (114), Expect = 9e-07
 Identities = 21/184 (11%), Positives = 43/184 (23%), Gaps = 11/184 (5%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-------TSNQLKLRV 55
           G   L     A    +  +  +          + C                TS   +L+ 
Sbjct: 126 GEKEL-KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQT 184

Query: 56  KYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR 115
              P      +            + C+++   P    +       + L+      +    
Sbjct: 185 FVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFS 244

Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCS-VRNETTSSVH 174
                     +     L+CA      +Q    L  V +   P P    +       + V 
Sbjct: 245 AKASVSVTAEDEGTQRLTCAVILGNQSQ--ETLQTVTIYSFPAPNVILTKPEVSEGTEVT 302

Query: 175 ISCT 178
           + C 
Sbjct: 303 VKCE 306

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 23/184 (12%), Positives = 41/184 (22%), Gaps = 27/184 (14%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP--- 59
                   T      S ++ V      +      C+ I       +    + +   P   
Sbjct: 229 DQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET-LQTVTIYSFPAPN 287

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           +  +   V  G      V + C                  G                + L
Sbjct: 288 VILTKPEVSEG----TEVTVKCEAHPRAKVTLNGVPAQPLGP--------------RAQL 329

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA--GKPQPPQNCSVRNETT---SSVH 174
                 E +  + SC+A   +  Q+        L     P+  +     N T    S   
Sbjct: 330 LLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQT 389

Query: 175 ISCT 178
             C 
Sbjct: 390 PMCQ 393

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 55.7 bits (134), Expect = 8e-10
 Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 20/142 (14%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQ-LKLRVKYAPIC 61
                        +  N +L ++ +       YK S  +TKG+    +   L+++     
Sbjct: 49  KEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-- 106

Query: 62  KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
              +I         +  + C V             +  G+ L +     +          
Sbjct: 107 SKPKISWTC----INTTLTCEVMNGTDP-ELNLYQD--GKHLKLSQRVITH--------- 150

Query: 122 TPVTELDYGTLSCAAQNAIGTQ 143
              T        C A N +  +
Sbjct: 151 -KWTTSLSAKFKCTAGNKVSKE 171

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 18/128 (14%)

Query: 16  ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSE 75
           IL+N  L ++ ++R  +GTY  +  +T G    N+  L ++   +     I         
Sbjct: 57  ILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNK-ALDLRILEMVSKPMIYW----ECS 111

Query: 76  SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA 135
           +  + C V         K                            +           C 
Sbjct: 112 NATLTCEVLEGTDV-ELKLYQGK------------EHLRSLRQKTMSYQWTNLRAPFKCK 158

Query: 136 AQNAIGTQ 143
           A N +  +
Sbjct: 159 AVNRVSQE 166

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 54.6 bits (131), Expect = 2e-09
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 25/143 (17%)

Query: 3   GGIPLAHNTSARIIL---SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           G   L     +R  L    N  L+++ +  + + TY C   + K E       L      
Sbjct: 48  GPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTA---- 103

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
              SD  ++ G    +S+ +           S + +           S R  +   G  L
Sbjct: 104 --NSDTHLLQG----QSLTLTLESPPGSSP-SVQCR-----------SPRGKNIQGGKTL 145

Query: 120 RYTPVTELDYGTLSCAAQNAIGT 142
             + +   D GT +C        
Sbjct: 146 SVSQLELQDSGTWTCTVLQNQKK 168

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 6/36 (16%), Positives = 18/36 (50%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
           + I   ++L + ++  Q +GT+ C+ +  + +    
Sbjct: 137 KNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 27/146 (18%), Positives = 46/146 (31%), Gaps = 14/146 (9%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQS-AGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
            +  +        L +  L L  V+         C A N  G A  + +++ V +     
Sbjct: 196 ELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVS-VQVNVSFPA--- 251

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN------NSGETLDVGSERFSSGSRG 116
              + +  A       I  +V+  P   S +W FN       S    +      +   R 
Sbjct: 252 --SVQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSVLNETSFIFTEFLEPAANETVRH 308

Query: 117 SMLRYTPVTELDYGTLSCAAQNAIGT 142
             LR    T ++ G  +  A N  G 
Sbjct: 309 GCLRLNQPTHVNNGNYTLLAANPFGQ 334

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 20/114 (17%), Positives = 34/114 (29%), Gaps = 11/114 (9%)

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
           + V + C VE         W              +        +      ++L+   ++C
Sbjct: 174 DDVLLRCQVEGRGLE-QAGWILTE--LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTC 230

Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT 188
            A+N +G         V +      P   SV+  T   +H  C P    G P  
Sbjct: 231 WAENDVGRAEV----SVQV--NVSFP--ASVQLHTAVEMHHWCIPFSVDGQPAP 276

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 54.2 bits (130), Expect = 4e-09
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 16/155 (10%)

Query: 15  IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS 74
           + L N +L +  V  Q AG Y+C    + G A   ++ ++V       + RI++V    +
Sbjct: 75  LSLGNAALQITDVKLQDAGVYRCMI--SYGGADYKRITVKVNAPYNKINQRILVVD-PVT 131

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG-----SMLRYTPVTELDY 129
              ++ C  E  P A    W  ++        +   S          S LR   +     
Sbjct: 132 SEHELTCQAEGYPKAEV-IWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLR---INTTTN 187

Query: 130 GTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQN 162
               C  +     +      ++V+   P   PP  
Sbjct: 188 EIFYCTFRRLDPEE--NHTAELVIPELPLAHPPNE 220

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 53.7 bits (128), Expect = 1e-08
 Identities = 19/189 (10%), Positives = 45/189 (23%), Gaps = 29/189 (15%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC- 61
              P  +NT+        +L +   + ++AG+YK +  +T    +       ++ A +  
Sbjct: 43  DDQPHENNTA--------TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIV 94

Query: 62  ----KSDRIVIVGASRSESVDIHCAVEADPPAR---SFKWKFNNSGETLDVGSERFSSGS 114
                    V           +  +    P       + W                    
Sbjct: 95  NITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGE------------DVID 142

Query: 115 RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA-GKPQPPQNCSVRNETTSSV 173
               +     T    G  +                +++LA          S      + +
Sbjct: 143 TTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEI 202

Query: 174 HISCTPGYD 182
            ++     D
Sbjct: 203 SLNYVVSED 211

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 18/146 (12%)

Query: 15  IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS 74
           +I + Q + +Q+ +    G Y         ++ ++     +        D +     +  
Sbjct: 140 VIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALG 199

Query: 75  ESVDIHCAVEAD---------PPARSFKWKFNNSGETLDV--------GSERFSSGSRGS 117
             + ++  V  D              + W     G+              E FS    G 
Sbjct: 200 NEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH 259

Query: 118 MLRYTPVTELDYGTLSCAAQNAIGTQ 143
            L     T  D     C A+     +
Sbjct: 260 -LFKESATYDDTAKFWCVAKLYQQIE 284

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 54.2 bits (129), Expect = 1e-08
 Identities = 26/229 (11%), Positives = 58/229 (25%), Gaps = 21/229 (9%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK--YAPICKSDRIVIVGASRSE 75
            + S+V+  + ++ AG Y C A +       + ++                 +V      
Sbjct: 288 GSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGS 347

Query: 76  SVDIHCAVEADPPARSFKWKFN-------------NSGETLDVGSERFSSGSRGSMLRYT 122
           SV + C            W                + G        R S         +T
Sbjct: 348 SVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFT 407

Query: 123 P----VTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT 178
                +T  D G   C        + T  +  +   G+P      +V      ++ + C 
Sbjct: 408 VILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIE--GEPNLKVPGNVTAVLGETLKVPCH 465

Query: 179 PGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMR 227
                   + +  +  +     L              ++     ++ + 
Sbjct: 466 FPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLN 514

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 12/170 (7%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
           +++L +++ + AG Y C         T+ ++K+      +     +    A   E++ + 
Sbjct: 407 TVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVT---AVLGETLKVP 463

Query: 81  CAVEADPPARSFKW-KFNNSGETLDVGSERFSS--------GSRGSMLRYTPVTELDYGT 131
           C       +    W K+NN+G       +   S         SR   L    VT  D G 
Sbjct: 464 CHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW 523

Query: 132 LSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGY 181
             C  +       T  +Y  V   K    ++ S+     +        G+
Sbjct: 524 YWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSLAKADAAPDEKVLDSGF 573

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 27/184 (14%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
           S+V+ ++    AG Y C A +       N          +     +V        SV  H
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKN-----ADLQVLKPEPELVY--EDLRGSVTFH 238

Query: 81  CAVEADPPARSFKWKFNNSGETLDV-----GSERFSSGSRGSM----------LRYTPVT 125
           CA+  +    +      +SGE  DV     G    +   R  +          +  T + 
Sbjct: 239 CALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLR 298

Query: 126 ELDYGTLSCAAQNAIGT---QVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYD 182
           + D G   C A +                V      P     V+    SSV + C   Y+
Sbjct: 299 KEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCP--YN 356

Query: 183 GGLP 186
               
Sbjct: 357 RKES 360

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 37/232 (15%), Positives = 75/232 (32%), Gaps = 29/232 (12%)

Query: 21  SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH 80
            + + ++S+  +G YKC         + +      +   +    ++  V   R+ ++  +
Sbjct: 76  VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTI--N 133

Query: 81  CAVEADPPARSFKW----------KFNNSGETLDVGSERFS-----SGSRGSMLRYTPVT 125
           C  + +   +                ++SG      + R       +G     +    + 
Sbjct: 134 CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193

Query: 126 ELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGL 185
             D G   C A +   +       QV+       P+   V  +   SV   C  G +   
Sbjct: 194 LSDAGQYLCQAGDDSNSNKKNADLQVL------KPEPELVYEDLRGSVTFHCALGPEVAN 247

Query: 186 PQTFTLELYSASDLNLLVNLTNLDTPA----FTLEDLGLDGTVLMRVVISGV 233
              F     S  + +++VN      PA      L     DG+    VVI+G+
Sbjct: 248 VAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSF--SVVITGL 297

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 12/104 (11%)

Query: 47  TSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG 106
           + +   L V   PI  S +         E   I C + + PP     W +      L+ G
Sbjct: 3   SGSSGTLTVNGPPIISSTQTQHA--LHGEKGQIKCFIRSTPPPDRIAWSWK--ENVLESG 58

Query: 107 S-------ERFSSGSRGSMLRYTPVTELDYGTL-SCAAQNAIGT 142
           +          +     S L  + +   D+ T+ +C A N+ G+
Sbjct: 59  TSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS 102

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 52.2 bits (124), Expect = 4e-08
 Identities = 23/118 (19%), Positives = 31/118 (26%), Gaps = 9/118 (7%)

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
           +SV + C         +  W           GS        G  L    V   D G  SC
Sbjct: 22  DSVTLTCPGVEPEDNATVHWVLRKP----AAGSHPSRWAGMGRRLLLRSVQLHDSGNYSC 77

Query: 135 AAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLE 192
                    V      +++   P+ PQ    R    S+V     P     L     L 
Sbjct: 78  YRAGRPAGTV-----HLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLL 130

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 27/216 (12%), Positives = 57/216 (26%), Gaps = 13/216 (6%)

Query: 12  SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGA 71
            +R     + L+L+ V    +G Y C          +  + L V   P            
Sbjct: 52  PSRWAGMGRRLLLRSVQLHDSGNYSCYR----AGRPAGTVHLLVDVPPEEPQLSCFRKSP 107

Query: 72  SRSESVDIHCAVEADPPAR---SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
             +   +           +     +   N+  E      +      + S     P  +  
Sbjct: 108 LSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSS 167

Query: 129 YGTLSCAAQNAIGTQVTPCLY-QVVLAGKPQPPQNCSVRNETTSSVHISCT-----PGYD 182
           +  +S    +++G++ +     Q     +P PP N +V     +   +S T         
Sbjct: 168 FYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS 227

Query: 183 GGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDL 218
                 F L   +         +         + D 
Sbjct: 228 SFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDA 263

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 51.0 bits (122), Expect = 6e-08
 Identities = 23/174 (13%), Positives = 55/174 (31%), Gaps = 30/174 (17%)

Query: 4   GIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
           G  + ++   +  ++ +   L + + +    G Y     + K       + L  +     
Sbjct: 41  GSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKT-VDLSGQAYDEA 99

Query: 62  KSDRIVIVGASRSE--------------------SVDIHCAVEADPPARSFKWKFNNSGE 101
            ++   +  A+ +E                    ++++ C V  DPP     W  N   +
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPE-VSWLKN--EK 156

Query: 102 TLDVGSERFS---SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
            L   ++  +      R +      V+  D G      +N  G++ +     V 
Sbjct: 157 ALA-QTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 22/134 (16%), Positives = 38/134 (28%), Gaps = 14/134 (10%)

Query: 64  DRIVIVG-----ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSM 118
             I +        S +E + ++  V          W  N  G  +   S+R  +G  G  
Sbjct: 2   SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHN--GSAIRY-SDRVKTGVTGEQ 58

Query: 119 --LRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
             L+    T  D G       +              L+G+         +    +++   
Sbjct: 59  IWLQINEPTPNDKGKYVMELFDGKTGHQKTV----DLSGQAYDEAYAEFQRLKQAAIAEK 114

Query: 177 CTPGYDGGLPQTFT 190
                 GGLP   T
Sbjct: 115 NRARVLGGLPDVVT 128

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 51.4 bits (122), Expect = 6e-08
 Identities = 28/184 (15%), Positives = 54/184 (29%), Gaps = 37/184 (20%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73
               ++ SL+LQ V +   G Y C            +  + +   P    D  V VG   
Sbjct: 78  DTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKK-PVELWVLPEEPRDLRVRVG--- 133

Query: 74  SESVDIHCAVEADPPAR--SFKWKFNNSGETLDVGSERFSSGSRGSM------------- 118
            ++  + C++++    R     W F++   T +     + S  R                
Sbjct: 134 -DTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL 192

Query: 119 ----------LRYTPVTELDYGTLSCAAQNAIGT-------QVTPCLYQVVLAGKPQPPQ 161
                     ++   V E D G  +C+               V    +Q  ++  P   +
Sbjct: 193 TGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDK 252

Query: 162 NCSV 165
               
Sbjct: 253 GQQG 256

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 117

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYS-ASDLNLLVNLTN 207
              L+  P PP    V + T +SV +S  PG  G LP   + +E +S +   +      +
Sbjct: 9   NYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANH 68

Query: 208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
           + T  +T+  L  +   L  V    +N +G S P
Sbjct: 69  VKTTLYTVRGLRPNTIYLFMVR--AINPQGLSDP 100

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 51.8 bits (123), Expect = 7e-08
 Identities = 25/178 (14%), Positives = 40/178 (22%), Gaps = 20/178 (11%)

Query: 9   HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC------- 61
                RI      L  +       G Y C   NT   +      L V     C       
Sbjct: 68  RLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVA-FPLEVVQKDSCFNSPMKL 126

Query: 62  -KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLR 120
                 +  G  R    ++     +     +  W        +   +     G     L 
Sbjct: 127 PVHKLYIEYGIQRITCPNVDGYFPSSVKP-TITWYMG--CYKIQNFNNVIPEGMN---LS 180

Query: 121 YTPVTELDYGTLSCAAQ---NAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRNETTSSV 173
           +      + G  +C      N     +T  L   V+       PP   S  +      
Sbjct: 181 FLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEK 238

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 27/141 (19%)

Query: 11  TSARIILSNQSLVLQKVSRQSAGTYKCSAINT---KGEATSNQLKLRVKYAPI-----CK 62
             A+ +     L+L+     +  ++ CSA      +    +   +LRV Y P      C 
Sbjct: 133 VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCP 192

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
            +                C    +P     K   +        G+     G         
Sbjct: 193 GNWTWPEN----SQQTPMCQAWGNPLP-ELKCLKD--------GTFPLPIGES------V 233

Query: 123 PVTELDYGTLSCAAQNAIGTQ 143
            VT    GT  C A++  G  
Sbjct: 234 TVTRDLEGTYLCRARSTQGEV 254

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 23/176 (13%), Positives = 41/176 (23%), Gaps = 27/176 (15%)

Query: 11  TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIV 67
           T      S ++ V      +      C+ I       +    + +   P   +  +   V
Sbjct: 52  TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET-LQTVTIYSFPAPNVILTKPEV 110

Query: 68  IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTEL 127
             G      V + C                  G                + L      E 
Sbjct: 111 SEG----TEVTVKCEAHPRAKVTLNGVPAQPLGPR--------------AQLLLKATPED 152

Query: 128 DYGTLSCAAQNAIGTQVTPCLYQVVLA--GKPQPPQNCSVRNETT---SSVHISCT 178
           +  + SC+A   +  Q+        L     P+  +     N T    S     C 
Sbjct: 153 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQ 208

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 25/173 (14%), Positives = 45/173 (26%), Gaps = 19/173 (10%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGASR 73
            N   V +  + Q      C +       ++ +  L V + P    +        VG   
Sbjct: 46  GNNRKVYELSNVQEDSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVG--- 101

Query: 74  SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
            +++ + C VE   P  +         + L    E                 +      S
Sbjct: 102 -KNLTLRCQVEGGAPRANLTVVLLRGEKELK--REPAVGEPAEVTTTVLVRRDHHGANFS 158

Query: 134 CAAQNAIGTQVTPCLYQV-------VLAGKPQPPQNCSVRN-ETTSSVHISCT 178
           C  +  +  Q                      PPQ  S R  E  +   + C+
Sbjct: 159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCS 211

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 22/158 (13%), Positives = 38/158 (24%), Gaps = 9/158 (5%)

Query: 9   HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKG-------EATSNQLKLRVKYAPIC 61
               A    +  +  +          + C              E TS   +L+    P  
Sbjct: 131 KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT 190

Query: 62  KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
               +            + C+++   P    +       + L+            S    
Sbjct: 191 PPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN--PTVTYGNDSFSAKAS 248

Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP 159
             VT  D GT        +G Q    L  V +   P P
Sbjct: 249 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP 286

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS---SGSRGSML 119
             + V+ G    +SV + C + A PP +   WK N   E +   ++R S     +    L
Sbjct: 23  QSKKVLEG----DSVKLECQISAIPPPK-LFWKRN--NEMVQFNTDRISLYQDNTGRVTL 75

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPC 147
               V + D G  + +A N  G      
Sbjct: 76  LIKDVNKKDAGWYTVSAVNEAGVTTCNT 103

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 3   GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA 58
               +  NT    +  +     +L+++ V+++ AG Y  SA+N  G  T N  +L V   
Sbjct: 52  NNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCN-TRLDVTAR 110

Query: 59  P 59
           P
Sbjct: 111 P 111

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 44.7 bits (106), Expect = 1e-06
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 4  GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
          G+ LA   S R  ++ + + +Q      +G Y C   +  G  T+    + V  A 
Sbjct: 40 GVQLA--ESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTY-FSVNVSDAL 92

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 19/152 (12%)

Query: 28  SRQSAGTYKCSAINTKGEATSNQL-----KLRVKYAP--ICK-SDRIVIVGASRSESVDI 79
            R+++G+   S IN       +       + +    P       D  V+ G     +   
Sbjct: 6   GRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEG----SAARF 61

Query: 80  HCAVEADPPARSFKWKFNNSGETLDVGSERF---SSGSRGSMLRYTPVTELDYGTLSCAA 136
            C VE  P      W  +     +   S  F           L  + V   D    +C A
Sbjct: 62  DCKVEGYPDP-EVMWFKD--DNPVK-ESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKA 117

Query: 137 QNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNE 168
            N++G         V   GK    +     +E
Sbjct: 118 VNSLGEATCTAELLVETMGKEGEGEGEGEEDE 149

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 4   GIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
             P+  +   +I    +   SL + +V       Y C A+N+ GEAT    +L V+   
Sbjct: 79  DNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT-AELLVETMG 136

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 127

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 1/93 (1%)

Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNL 208
              +   P PP +  + ++   SV +S TPG D   P   F +E   A     L +    
Sbjct: 10  PAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTE 69

Query: 209 DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
            +   T   L L   V     +  VN+ G+SLP
Sbjct: 70  VSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLP 102

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 29/134 (21%), Positives = 40/134 (29%), Gaps = 14/134 (10%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAIN---TKGEATSNQLKLRVKY---APICKSDRIVIVGA 71
            N SL +     +  G+Y          K     N+L L V      P       +  G 
Sbjct: 80  KNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGR 139

Query: 72  SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGT 131
               S  +  + EA PP  +F W  N                +R S L  TP  E     
Sbjct: 140 PTRLSCSLPGSCEAGPPL-TFSWTGNALSPLD-------PETTRSSELTLTPRPEDHGTN 191

Query: 132 LSCAAQNAIGTQVT 145
           L+C  +       T
Sbjct: 192 LTCQMKRQGAQVTT 205

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1 Length = 121

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLN---LLVNLTNLDT 210
             P+ P   ++   + +SV+++  P  +GG P Q+F +E      +    L  +      
Sbjct: 16  SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 75

Query: 211 PAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
            +  +  L    +   RV    +N  G S P
Sbjct: 76  LSVEITGLEKGISYKFRVR--ALNMLGESEP 104

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 46.4 bits (109), Expect = 3e-06
 Identities = 25/153 (16%), Positives = 39/153 (25%), Gaps = 28/153 (18%)

Query: 17  LSNQSLVLQKVSRQSAGTYKCSAINT--KGEATSNQLKLRVKYAPICKSDRIVI-----V 69
           L+  +L L  V  Q  G Y C       + E   +   + +K      S+ + +     V
Sbjct: 87  LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVV 146

Query: 70  GASRSESVDIHCAVEADPPARSFKWKFNNS-------------GETLDVGSERFSSGSRG 116
                  + + C       A +  W    +                   G   FSS   G
Sbjct: 147 QVDEGNDITMTCPCTDCANA-NVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG 205

Query: 117 SM-------LRYTPVTELDYGTLSCAAQNAIGT 142
                    L        D G + C      G 
Sbjct: 206 RASFSGARNLVIRAAKITDAGRVWCELATGQGE 238

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 4   GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           G+ ++   S    L N  L ++       G Y C A    GEAT +   + V+   
Sbjct: 46  GVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSGEATWS-AYIEVQEFG 100

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 9/104 (8%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
            ++ V V      +  + C     P   +  W+ +  G  +     R      G  L+  
Sbjct: 16  VNQTVAVD----GTFVLSCVATGSPVP-TILWRKD--GVLVSTQDSRIKQLENGV-LQIR 67

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP-QPPQNCSV 165
                D G  +C A    G        +V   G P QPP+    
Sbjct: 68  YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDP 111

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 118

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 3/93 (3%)

Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNL 208
              L+ +P  P    + N T +S+ +      D G     F LE                
Sbjct: 11  FTTLSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMG 70

Query: 209 DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
               F +  L        R+     N  G S  
Sbjct: 71  SQKQFKITKLSPAMGCKFRLS--ARNDYGTSGF 101

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
               L  ++   +   N++L +++V ++  G Y C A +  G A   +    ++ A 
Sbjct: 47  DNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKV-EAFFIIEGAQ 102

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 13/114 (11%)

Query: 50  QLKLRVKYAP-ICK--SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG 106
           QL +  + AP I     ++   +G    ES+++ C    +PP +   W  +   ETL   
Sbjct: 2   QLTVLERVAPTITGNLENQTTSIG----ESIEVSCTASGNPPPQ-IMWFKD--NETLVE- 53

Query: 107 SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP 160
                       L    V + D G  +C A + +G       + +   G  +  
Sbjct: 54  DSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII--EGAQEKT 105

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 45.4 bits (107), Expect = 4e-06
 Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 11/131 (8%)

Query: 16  ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSE 75
              + SL L  +  +  G+Y+           S+     ++     +      +  + + 
Sbjct: 66  FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTC 125

Query: 76  SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA 135
            + + C+VE      SF+W+               SS    + + + P    +    +C 
Sbjct: 126 ELHLTCSVEDADDNVSFRWEALG---------NTLSSQPNLT-VSWDPRISSE-QDYTCI 174

Query: 136 AQNAIGTQVTP 146
           A+NA+      
Sbjct: 175 AENAVSNLSFS 185

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 42.9 bits (101), Expect = 6e-06
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 4  GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN 49
          G+ L    S R  ++ + + ++      +G Y C   +  G  T+ 
Sbjct: 46 GVQLV--ESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTY 89

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
           +++ + V      +  + C    DP      W     G T      R +   +G+ L+  
Sbjct: 16  ANQTLAVD----GTALLKCKATGDPLP-VISWLKE--GFTFPGRDPRATIQEQGT-LQIK 67

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG 155
            +   D GT +C A ++ G      +  V  +G
Sbjct: 68  NLRISDTGTYTCVATSSSGETSWSAVLDVTESG 100

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 4  GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
          G           I    +L ++ +     GTY C A ++ GE + +   L V 
Sbjct: 46 GFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSGETSWS-AVLDVT 97

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 4  GIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
          G  +  +   ++I+S +   SL+ + V    AG Y C A N  GEAT   ++L V 
Sbjct: 43 GRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFT-VQLDVL 97

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 42.7 bits (101), Expect = 9e-06
 Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 4/94 (4%)

Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQT-FTLELYSASDLNLLVNLTN 207
            + +  +P PPQ   + +    +V ++   P  DG    T +T++      +     + +
Sbjct: 11  DIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEH 70

Query: 208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
               + T+ +L +      RV     N  G S  
Sbjct: 71  YHRTSATITELVIGNEYYFRVF--SENMCGLSED 102

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQT-FTLELYSASDLNLLVNLTN 207
            V    +P+PP+   + N    +V +S   P  DGG   T +T+E    +          
Sbjct: 3   MVADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIE-KREAMGGSWSPCAK 61

Query: 208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
                 T+E L        R++    N  G+S P
Sbjct: 62  SRYTYTTIEGLRAGKQYEFRIIAE--NKHGQSKP 93

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 3  GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
          G   L ++    I   +    L ++ +++   GTY+C  +N  GE +S   +L VK
Sbjct: 39 GVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSS-YAELFVK 93

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 9/87 (10%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSM--LR 120
              +   G      V   C +E    +    W F      L+  SE++       +  L 
Sbjct: 9   MHAVGEEG----GHVKYVCKIENYDQSTQVTWYFG--VRQLE-NSEKYEITYEDGVAILY 61

Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPC 147
              +T+LD GT  C   N  G   +  
Sbjct: 62  VKDITKLDDGTYRCKVVNDYGEDSSYA 88

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 18/138 (13%), Positives = 38/138 (27%), Gaps = 7/138 (5%)

Query: 8   AHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIV 67
                  I     +L +  V+   +G Y C   +      +                  V
Sbjct: 71  TSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLH----V 126

Query: 68  IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG--SMLRYTPVT 125
            V   +   + + C      P    +W  NN GE +        +   G  ++     + 
Sbjct: 127 DVKGYKDGGIHLECRSTGWYPQPQIQW-SNNKGENIPTVEAPVVADGVGLYAVAASVIMR 185

Query: 126 ELDYGTLSCAAQNAIGTQ 143
                 +SC  ++++   
Sbjct: 186 GSSGEGVSCTIRSSLLGL 203

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 21/173 (12%), Positives = 42/173 (24%), Gaps = 36/173 (20%)

Query: 3   GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK 62
            G  +   T  +   +     L   ++   G Y+C     K +      ++         
Sbjct: 37  DGKMIGFLTEDKKKWN-----LGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKD 91

Query: 63  SDRIVIVGAS-------------------------RSESVDIHCAVEADPPARSFKWKFN 97
           + +                                   +V + C      P     W+ N
Sbjct: 92  AAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY---PGSEILWQHN 148

Query: 98  NSGETLDVGSERFSSGSRGSMLRYTPVTEL-DYGTLSCAAQNAIGTQVTPCLY 149
              + +    +  + GS    L     +EL   G   C  + +        LY
Sbjct: 149 --DKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLY 199

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 17/130 (13%), Positives = 36/130 (27%), Gaps = 21/130 (16%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73
            +  +N +L +  VS++  G Y    ++   +    ++ + V Y  + K           
Sbjct: 63  DLDKTNGALRIYNVSKEDRGDYYMRMLHETED--QWKITMEV-YEMVSKPMIYW-----E 114

Query: 74  SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
             +  + C V         K              E   S  +      +           
Sbjct: 115 CSNATLTCEVLEGTDV-ELKLYQGK---------EHLRSLRQ---KTMSYQWTNLRAPFK 161

Query: 134 CAAQNAIGTQ 143
           C A N +  +
Sbjct: 162 CKAVNRVSQE 171

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 4  GIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
          G+ +  +              LV++ V+ + + +    AIN  GE +S    L V+
Sbjct: 43 GVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSS-HAFLLVQ 97

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 41.7 bits (98), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 14  RIILSNQSLVLQKV-----SRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           R++L + SL   ++     SR   G Y C A N  GEA S+   L V  A 
Sbjct: 61  RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS--GETLDVGSERFSSGSRGSML- 119
           SD IV  G    E   ++C  E  P     +W           D           GS+  
Sbjct: 17  SDLIVSKG----EPATLNCKAEGRPTPT-IEWYKGGERVETDKDDPRSHRMLLPSGSLFF 71

Query: 120 ---RYTPVTELDYGTLSCAAQNAIGTQVT 145
               +   +  D G   C A+N +G  V+
Sbjct: 72  LRIVHGRKSRPDEGVYVCVARNYLGEAVS 100

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens} Length = 114

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAF 213
            +P PP     +  +  S  +S T   DGG P   + ++ Y + D         +     
Sbjct: 7   REPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVK-YRSKDKEDQWLEKKVQGNKD 64

Query: 214 TLEDLGLDGTVLMRVVISGVNAKGRSLP 241
            +    L  T+   V I+  N  G S P
Sbjct: 65  HIILEHLQWTMGYEVQITAANRLGYSEP 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 7/58 (12%)

Query: 3  GGIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
          G    A   +  +++  +    S+      R  +G YK    N  GE  +   ++ V+
Sbjct: 39 GDSGAA--LAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAI-FEVIVQ 93

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 25/141 (17%), Positives = 36/141 (25%), Gaps = 19/141 (13%)

Query: 16  ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP---ICKSDRIVIVGAS 72
           + S   LVL +        Y C              +L V   P       ++  +    
Sbjct: 73  LDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVME 132

Query: 73  RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG--------------SM 118
            S      C      PA    W  N  G+ L+V  E    G                 S 
Sbjct: 133 DSAQEIATCNSRNGNPAPKITWYRN--GQRLEVPVEMNPEGYMTSRTVREASGLLSLTST 190

Query: 119 LRYTPVTELDYGTLSCAAQNA 139
           L      +    +  CAA  +
Sbjct: 191 LYLRLRKDDRDASFHCAAHYS 211

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 4/56 (7%)

Query: 4  GIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
            P+  +       +      L +    R  AG Y C A+N  G       +L V+
Sbjct: 43 RQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCE-ARLEVR 97

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 11/93 (11%)

Query: 55  VKYAPICKSDRIV-IVGASRSESVDIHCAVEADPPARSFKWKFN----NSGETLDVGSER 109
           V +AP      I  +   +      I   V+ +P   + +W +N    N  + +      
Sbjct: 1   VHFAP-----TITFLESPTSDHHWCIPFTVKGNPKP-ALQWFYNGAILNESKYICTKIHV 54

Query: 110 FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT 142
            +       L+    T ++ G  +  A+N  G 
Sbjct: 55  TNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK 87

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 19  NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           +  L L   +  + G Y   A N  G+     +       P
Sbjct: 61  HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ-ISAHFMGWP 100

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 109

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 154 AGKPQPPQNCSVRNETTSSVHIS-CTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTP 211
           +  P  P +  +     + + +    P          + LE+   +         + +  
Sbjct: 5   SSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDL 64

Query: 212 AFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
           A+T+++L        +V     N++G+S P
Sbjct: 65  AYTVKNLRRSTKYKFKV--IAYNSEGKSNP 92

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 4   GIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           G  ++  +    I  +     SL     +    G Y   A N +G  +    +L V+   
Sbjct: 46  GKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCT-GRLMVQAVN 104

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 3  GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATS 48
           G P+     +        L +Q    +  GTY C A N  G+ + 
Sbjct: 48 NGQPI-QYARSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSC 92

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
            D  VI G    +   + C+V   P  R   W  N  G+ +        +G   + L   
Sbjct: 19  KDCAVIEG----QDFVLQCSVRGTPVPR-ITWLLN--GQPIQYARSTCEAGV--AELHIQ 69

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPC 147
                D+GT +C A+NA+G      
Sbjct: 70  DALPEDHGTYTCLAENALGQVSCSA 94

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 2   AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
           +    L+  ++  + + N  L  +KV  +  G Y C A+      T + ++L+V    + 
Sbjct: 283 SNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLS-VELKVYNFTLH 341

Query: 62  KSD 64
              
Sbjct: 342 GHH 344

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
            C   +     A   +++ I C  +      +  W   ++ + L  GS    S   G  L
Sbjct: 247 NCSEYKESAWEAHLGDTLTIRCDTKQQGM--TKVWVSPSNEQVLSQGSNGSVSVRNGD-L 303

Query: 120 RYTPVTELDYGTLSCAAQNAIG 141
            +  V   D G  +C A     
Sbjct: 304 FFKKVQVEDGGVYTCYAMGETF 325

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 12/90 (13%)

Query: 62  KSDRIVIVGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSGSRG---- 116
                + VG    E + ++C    +      F W++ +S         R      G    
Sbjct: 15  SHGIELSVG----EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMK 70

Query: 117 ---SMLRYTPVTELDYGTLSCAAQNAIGTQ 143
              S L    VT  D G  +CAA + + T+
Sbjct: 71  KFLSTLTIDGVTRSDQGLYTCAASSGLMTK 100

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 4   GIPLAHNTSARIILS---NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           G P+  +++ ++++      SL+++ V+ + AG Y C A N  G+ + + L+L V    
Sbjct: 47  GKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFS-LELVVAAKE 104

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 11/100 (11%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER--FSSGSRGSMLR 120
            D  V  G    +   + C V   P      W+ +  G+ +   S        +    L 
Sbjct: 17  GDLTVQEG----KLCRMDCKVSGLPTP-DLSWQLD--GKPVRPDSAHKMLVRENGVHSLI 69

Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP 160
             PVT  D G  +C A N  G        ++V+A K   P
Sbjct: 70  IEPVTSRDAGIYTCIATNRAGQNSFSL--ELVVAAKESGP 107

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 3  GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
            +PL H T        +  ++  V  +  GTY C   N +    S ++++ +    
Sbjct: 40 NELPLTHET-------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 106

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPA 212
           +  P+PP +  V   T +SV ++   G     P   + ++  +A        +  + T  
Sbjct: 5   SSGPKPPIDLVVTETTATSVTLTWDSG--NSEPVTYYGIQYRAAGTEGPFQEVDGVATTR 62

Query: 213 FTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
           +++  L        RV+   VN+ GR  P
Sbjct: 63  YSIGGLSPFSEYAFRVL--AVNSIGRGPP 89

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
           +R +  N  L ++ V    AGTY C+  N           L V+
Sbjct: 54 PSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT-ATLHVQ 97

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 121

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 150 QVVLAGKPQPPQNCSVR--NETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLT 206
            + +   P  P++           +++++ T  +DG  P   + LE  S ++    V L 
Sbjct: 11  HLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILE-MSENNAPWTVLLA 69

Query: 207 NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
           ++D  A ++   GL      +  +  VN  G+   
Sbjct: 70  SVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQF 104

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 4  GIPLAHNTSARIILSNQ----SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
          G+ L    S++I  +N     +L +       +GTY+    N KGEA+     L V 
Sbjct: 46 GVEL--QESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYA-TLDVT 99

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 10/87 (11%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSM--LR 120
               V  G    ++      V++ P A   KW  N  G  L   S +    +   +  L 
Sbjct: 16  RSHRVPCG----QNTRFILNVQSKPTAE-VKWYHN--GVELQ-ESSKIHYTNTSGVLTLE 67

Query: 121 YTPVTELDYGTLSCAAQNAIGTQVTPC 147
                  D GT      N  G      
Sbjct: 68  ILDCHTDDSGTYRAVCTNYKGEASDYA 94

>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type III domain containing protein, cytoskeleton, muscle contraction; NMR {Mus musculus} SCOP: b.1.2.1 Length = 111

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 5/91 (5%)

Query: 154 AGKPQPPQNCSVRNETTSSVHISCT-PGYDGGLPQT-FTLELYSASDLN-LLVNLTNLDT 210
           +G    PQ+ +V + T ++  +    P   G      + +E         +  N   ++ 
Sbjct: 6   SGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVER 65

Query: 211 PAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
             FT++DL     +L RVV  GVN  GRS P
Sbjct: 66  CGFTVKDLPTGARILFRVV--GVNIAGRSEP 94

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens} Length = 680

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 15/127 (11%), Positives = 32/127 (25%), Gaps = 12/127 (9%)

Query: 128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGL-P 186
             G   C +     T   P    +      +P +        +  + +  +  ++  + P
Sbjct: 134 CSGVKKCCSNGCGHTCQVPKT--LYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEP 191

Query: 187 QTFTLE-------LYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS 239
             + ++         S  D      +         L D+        RV  + VN  G  
Sbjct: 192 VIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRV--AAVNVHGTR 249

Query: 240 LPVIWDD 246
                  
Sbjct: 250 GFTAPSK 256

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 11/132 (8%)

Query: 19  NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVI--VGASRSES 76
           N S+V+  +     GTY+C  +  + +A   +    V  +         I       S  
Sbjct: 64  NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNI 123

Query: 77  VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG-----SMLRYTPVTELDYGT 131
             I C+     P     W   N  E   + +              S L +         +
Sbjct: 124 RRIICSTSGGFPEPHLSW-LENGEELNAINTTVSQDPETELYAVSSKLDFNMT---TNHS 179

Query: 132 LSCAAQNAIGTQ 143
             C  +      
Sbjct: 180 FMCLIKYGHLRV 191

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 157 PQPPQNCSVRNETTSSVHISCT-PGYDGGLPQT-FTLELYSASDLN-LLVNLTNLDTPAF 213
             PP   +V + T ++V +    P + G      + LE       + ++ N   +D   F
Sbjct: 8   TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKF 67

Query: 214 TLEDLGLDGTVLMRVVISGVNAKGRSLP 241
           T+  L  D  + +RV    VNA G S P
Sbjct: 68  TITGLPTDAKIFVRVK--AVNAAGASEP 93

>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens} Length = 483

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 29/222 (13%), Positives = 73/222 (32%), Gaps = 18/222 (8%)

Query: 9   HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVI 68
           H     I L  +++ ++  +   + +   + + T  +       +   Y P    D    
Sbjct: 233 HTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFG-TVIFAGYPP----DTPQQ 287

Query: 69  VGASRSESVDIHCAVEADPPAR-------SFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
           +     +  +I C+               S+    + SG+ + +      +      L +
Sbjct: 288 LNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQ-LLF 346

Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS-CTPG 180
             +   +    +  A N +G   +  L  +     P  P +  V++  +++V +S   PG
Sbjct: 347 QMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPG 406

Query: 181 YDGGLPQTFTLELYSASDLNLLVNLTNLDTPA----FTLEDL 218
               +     +E+  ++ +    N+T            L+ L
Sbjct: 407 NFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKL 448

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 18/121 (14%)

Query: 51  LKLRVKYAPICKSDRIV-IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER 109
           + L V Y P     R+V +          I   V  +PP  +  W  N  G+ L   S+ 
Sbjct: 1   VALTVYYPP-----RVVSLEEPELRLEHCIEFVVRGNPPP-TLHWLHN--GQPLR-ESKI 51

Query: 110 FS------SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNC 163
                          L +   T  + G  +  A+N +GT             +P P    
Sbjct: 52  IHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGT--ANQTINGHFLKEPFPVDEV 109

Query: 164 S 164
           S
Sbjct: 110 S 110

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 13/62 (20%), Positives = 20/62 (32%), Gaps = 7/62 (11%)

Query: 4   GIPLAHNTSARII------LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY 57
           G PL  +    +       +S   L+  K +  + G Y   A N  G A    +      
Sbjct: 43  GQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT-INGHFLK 101

Query: 58  AP 59
            P
Sbjct: 102 EP 103

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 17/122 (13%), Positives = 27/122 (22%), Gaps = 12/122 (9%)

Query: 29  RQSAGTYKCSAINTKGEATSNQLKLRVKYAP----ICKSDRIVIVGASRSESVDIHCAVE 84
           R+      C            +  +R    P    +        VG    E+  + C V 
Sbjct: 60  REPETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVG----ENFTLSCRVP 114

Query: 85  ADPPARSFKWKFNNSGETL---DVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG 141
              P  S         + L       E   +             E      SC A+  + 
Sbjct: 115 GAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR 174

Query: 142 TQ 143
             
Sbjct: 175 PH 176

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 4  GIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
          G  +      ++        L + K     +G Y C+  N+ G  +S+  KL +K
Sbjct: 44 GKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSC-KLTIK 97

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 14/130 (10%), Positives = 29/130 (22%), Gaps = 22/130 (16%)

Query: 14  RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR 73
            +   + SL +  ++      Y+  + N           L V    +  S  ++    S 
Sbjct: 54  YLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMK---FFLYV-LEMV--SKPMIYWECS- 106

Query: 74  SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS 133
             +  + C V         K                            +           
Sbjct: 107 --NATLTCEVLEGTDV-ELKLYQGKE------------HLRSLRQKTMSYQWTNLRAPFK 151

Query: 134 CAAQNAIGTQ 143
           C A N +  +
Sbjct: 152 CKAVNRVSQE 161

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 8/86 (9%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRY 121
               V  G    ES    C  + +P      W     G+ L      + ++    S    
Sbjct: 22  RSMTVYEG----ESARFSCDTDGEPVPT-VTWLRK--GQVLSTSARHQVTTTKYKSTFEI 74

Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPC 147
           + V   D G  S   +N+ G Q    
Sbjct: 75  SSVQASDEGNYSVVVENSEGKQEAEF 100

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 3   GGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
            G  L+ +   ++  +    +  +  V     G Y     N++G+  +    L ++
Sbjct: 51  KGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAE-FTLTIQ 105

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A* Length = 306

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 35/215 (16%), Positives = 61/215 (28%), Gaps = 35/215 (16%)

Query: 9   HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVI 68
            + S+ ++ S ++L +Q      AG Y C      GE  S+ L L  K      S  I+ 
Sbjct: 40  LDQSSEVLGSGKTLTIQVKEFGDAGQYTCHK---GGEVLSHSLLLLHKKEDGIWSTDILK 96

Query: 69  VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT--- 125
                     + C  +      +  W    S +          S S    +     T   
Sbjct: 97  DQKEPKNKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGS-SDPQGVTCGAATLSA 155

Query: 126 --------------------------ELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP 159
                                     E     +   A + +  +     + +    KP P
Sbjct: 156 ERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDP 215

Query: 160 PQNCSVRNETTSS-VHISCTPGYDGGLPQT-FTLE 192
           P+N  ++    S  V +S         P + F+L 
Sbjct: 216 PKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLT 250

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 33/195 (16%), Positives = 53/195 (27%), Gaps = 36/195 (18%)

Query: 18  SNQSLVLQKVSRQSAGTYKCSAINTKGE----ATSNQLKLRVKYAPICKS-----DRIVI 68
             +S  +  V+   AG Y C   +        A SN + + V       S       +V 
Sbjct: 72  FQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVK 131

Query: 69  VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
            G    E V + C   +D     F        +       +   G   +     P+    
Sbjct: 132 SG----ERVILQC--WSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLAL 185

Query: 129 YGTLSCAAQNAIGT------------QVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHIS 176
            GT  C                     VT    +  L+ +P P        +   SV +S
Sbjct: 186 AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKV------QAGESVTLS 239

Query: 177 CTPGYDGGLPQTFTL 191
           C+          + L
Sbjct: 240 CSSRSSYD---MYHL 251

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 16  ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC 61
           +L++ +L    V     G Y C   N  G + ++   L V  A   
Sbjct: 403 VLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNAS-AYLNVSTAGTH 447

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 120

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 150 QVVLAGKPQPPQNCSVRNETTS-SVHIS-CTPGYDGGLP-QTFTLELYSASDLNLLVNLT 206
                 KP  P   SV+ +  S S  I+   P  +GG     + +E+   S+ N    + 
Sbjct: 11  FTTCPDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIY 70

Query: 207 NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
           +  T     + L       +RV    ++  G+S  
Sbjct: 71  SGATREHLCDRLNPGCFYRLRV--YCISDGGQSAV 103

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 4   GIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
              ++  ++ R+ +  + +L ++    Q  GTY C A N  G  +     L V+
Sbjct: 424 KHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGNDSMP-AHLHVR 476

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 108

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 15/87 (17%), Positives = 21/87 (24%), Gaps = 5/87 (5%)

Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDL-NLLVNLTNLDTPAFT 214
             PP+       T   V +   P          + LE    S    +L            
Sbjct: 8   LSPPRGLVA-VRTPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELL 66

Query: 215 LEDLGLDGTVLMRVVISGVNAKGRSLP 241
           +  L  D     R+V         S P
Sbjct: 67  VPGLIKDVLYEFRLV--AFAGSFVSDP 91

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 37.7 bits (87), Expect = 7e-04
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 5   IPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
           +   H  +     +  ++ +  +  +  GTY+C A N        +   RVK+  
Sbjct: 75  LDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTR-APRVKWVR 128

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 7/91 (7%)

Query: 62  KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
           +   I  VG    E +++    +  P  +   W     G  LD       +    ++   
Sbjct: 31  RQTYIRKVG----EQLNLVVPFQGKPRPQ-VVWTKG--GAPLDTSRVHVRTSDFDTVFFV 83

Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
                 D G    + Q            +VV
Sbjct: 84  RQAARSDSGEYELSVQIENMKDTATIRIRVV 114

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1 Length = 124

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 9/92 (9%)

Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLE----LYSASDLNLLVNLTNLDTP 211
           P PP N  + N    SV +   PGYDG      + +E    +    +  LL++  + +  
Sbjct: 18  PGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPD 77

Query: 212 AFTLEDLGLD-GTV-LMRVVISGVNAKGRSLP 241
           A ++E   L+  T    R+    VN  G S P
Sbjct: 78  ARSMEVPDLNPFTCYSFRMR--QVNIVGTSPP 107

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	100.0
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.97
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.97
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.97
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.97
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.96
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.95
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.95
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.95
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.95
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.95
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.95
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.94
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.94
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.94
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.94
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.94
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.94
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.94
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.94
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.94
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.94
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.94
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.94
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.93
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.93
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.93
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.93
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.93
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.93
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.93
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.93
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.92
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.92
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.92
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.92
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.92
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.92
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.92
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.92
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.92
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.92
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.91
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.91
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.91
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.91
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.91
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.91
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.91
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.9
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.9
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.9
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.89
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.89
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.89
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.89
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.88
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.88
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.88
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.88
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.88
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.87
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.87
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.87
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.87
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.87
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.87
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.87
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.86
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.86
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.86
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.86
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.86
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.86
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.85
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.85
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.85
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.85
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.85
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.85
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.85
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.84
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.84
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.84
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.84
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.84
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.84
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.83
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.83
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.83
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.83
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.82
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.82
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.82
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.82
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.82
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.82
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.82
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.82
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.82
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.82
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.81
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.81
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.81
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.81
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.81
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.81
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.81
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.81
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.81
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.81
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.81
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.81
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.8
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.8
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.8
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.8
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.8
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.8
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.8
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.8
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.8
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.8
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.8
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.8
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.79
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.79
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.79
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.79
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.79
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.79
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.79
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.79
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.79
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.79
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.79
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.79
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.79
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.79
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.79
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.78
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.78
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.78
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.78
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.78
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.78
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.78
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.78
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.77
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.77
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.77
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.77
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.77
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.77
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.76
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.76
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.76
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.76
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.76
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.76
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.76
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.76
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.75
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.75
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.75
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.75
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.75
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.75
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.75
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.75
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.74
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.74
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.74
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.74
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.74
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.74
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.74
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.74
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.74
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.74
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.73
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.73
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.73
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.73
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.73
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.73
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.73
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.73
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.72
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.72
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.72
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.72
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.72
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.72
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.71
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.71
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.71
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.71
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.71
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.71
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.71
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.7
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.7
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.7
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.7
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.7
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.7
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.69
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.69
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.69
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.69
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.69
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.68
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.68
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.68
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.68
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.68
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.68
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.68
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.68
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.68
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.68
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.67
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.67
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.67
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.67
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.66
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.66
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.66
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.66
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.66
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.66
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.66
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.65
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.65
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.65
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.65
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.65
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.65
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.65
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.64
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.64
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.64
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.64
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.64
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.64
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.64
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.64
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	99.64
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.64
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.64
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.64
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.64
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.63
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.63
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.63
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.63
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.63
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.63
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.63
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.63
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.63
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.63
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.63
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.63
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.63
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.63
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.62
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.62
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.62
3d85_D	306	IL-12B, interleukin-12 subunit P40, cytotoxic lymp	99.62
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.62
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.62
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.61
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.61
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.61
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.6
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.6
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.6
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.6
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.6
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.6
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.6
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.6
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.6
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.59
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.59
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.59
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.59
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.59
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.59
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.59
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.58
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.58
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.58
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.58
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.58
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.58
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.57
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.57
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.57
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.57
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.57
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.57
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.57
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.56
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.56
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.56
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.56
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.56
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.55
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.55
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.55
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.55
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.55
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.55
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.54
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.54
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.54
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.54
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.54
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.54
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.54
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.54
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.53
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.53
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.53
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.53
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.53
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.53
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.53
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.53
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.52
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.52
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.51
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.51
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.51
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.5
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.5
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.5
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.5
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.5
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.5
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.5
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.49
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.49
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.49
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.49
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.49
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.49
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.49
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.49
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.48
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.48
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.48
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.47
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.46
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.46
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.46
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.46
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.46
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.46
2kbg_A	114	N-CAM 2, neural cell adhesion molecule 2; fibronec	99.46
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.45
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.45
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.45
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.45
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.45
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.45
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.45
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.44
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.44
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.44
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.44
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.43
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.43
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.43
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.42
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.42
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.42
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.42
1v5j_A	108	KIAA1355 protein, RSGI RUH-008; FN3 domain, human	99.42
3fl7_A	536	Ephrin receptor; ATP-binding, kinase, nucleotide-b	99.42
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.41
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.41
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.41
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.41
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.41
1he7_A	126	High affinity nerve growth factor receptor; transf	99.39
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.39
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.39
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.38
2vkw_A	209	Neural cell adhesion molecule 1,140 kDa isoform; a	99.38
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.38
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.38
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.38
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.37
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.37
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.37
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.37
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.37
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.37
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.37
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.36
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.36
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.36
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	99.36
2q7n_A	488	Leukemia inhibitory factor receptor; cytokine cell	99.36
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.36
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.35
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.35
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.35
1x4z_A	121	Biregional cell adhesion molecule-related/DOWN- re	99.35
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.34
1x4x_A	106	Fibronectin type-III domain containing protein 3A;	99.34
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.34
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.34
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.34
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.34
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.33
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.33
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.33
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.33
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.33
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.33
2djs_A	108	Ephrin type-B receptor 1; tyrosine-protein kinase	99.33
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.33
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.33
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.32
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.32
3r8q_A	290	Fibronectin; heparin, FNIII, heparin binding, cell	99.32
1uey_A	127	KIAA0343 protein; immunoglobulin-like beta-sandwic	99.32
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.31
1bqu_A	215	Protein (GP130); cytokine receptor, glycoprotein 1	99.31
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.31
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.31
1x3d_A	118	Fibronectin type-III domain containing protein 3A;	99.31
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.3
1bpv_A	112	Titin, A71, connectin; fibronectin type III; NMR {	99.3
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.3
2e7h_A	109	Ephrin type-B receptor 4; FN3 domain, tyrosine- pr	99.3
2ed7_A	119	Netrin receptor DCC; tumor suppressor protein DCC,	99.3
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.3
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.3
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.29
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.29
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.29
1wf5_A	121	Sidekick 2 protein; FNIII domain, structural genom	99.29
3f7q_A	234	Integrin beta-4, GP150; hemidesmosome, cell adhesi	99.28
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.28
1x5x_A	109	Fibronectin type-III domain containing protein 3A;	99.28
2yuw_A	110	Myosin binding protein C, SLOW type; fibronectin I	99.28
1wis_A	124	KIAA1514 protein; FNIII domain, sidekick-2, struct	99.28
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.27
1x5j_A	113	Neogenin; RGM binding, fibronectin type III domain	99.27
2yux_A	120	Myosin-binding protein C, SLOW-type; fibronectin I	99.27
2ibg_A	214	CG9211-PA, GH03927P; IHOG, fibronectin type III, p	99.27
3l5i_A	290	Interleukin-6 receptor subunit beta; cytokine rece	99.26
1uem_A	117	KIAA1568 protein; immunoglobulin-like beta-sandwic	99.26
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.26
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.26
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.26
3p4l_A	211	Neogenin; iron homeostasis, hemojuvelin receptor,	99.26
1x5f_A	120	Neogenin; RGM binding, fibronectin type III domain	99.25
2ed8_A	106	Netrin receptor DCC; tumor suppressor protein DCC,	99.25
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.25
2yrz_A	118	Integrin beta-4; GP150, CD104 antigen, structural	99.25
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.25
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.25
2crz_A	110	Fibronectin type-III domain containing protein 3A;	99.25
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.25
2crm_A	120	Fibronectin type-III domain containing protein 3A;	99.24
1x5l_A	111	Ephrin type-A receptor 8; FN3 domain, structural g	99.24
2ens_A	96	Advanced glycosylation END product-specific recept	99.24
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.24
1wfu_A	120	Unnamed protein product; FN3 domain, similar to 17	99.24
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.24
2dm4_A	108	Sortilin-related receptor; beta-sandwich, sorting	99.24
1cfb_A	205	Drosophila neuroglian; neural adhesion molecule; H	99.24
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.23
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.23
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.23
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.23
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.23
2dju_A	106	Receptor-type tyrosine-protein phosphatase F; LAR	99.23
2edd_A	123	Netrin receptor DCC; tumor suppressor protein DCC,	99.23
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.23
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.22
1tdq_A	283	Tenascin-R; extracellular matrix, lecticans, tenas	99.22
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.22
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.22
1qr4_A	186	Protein (tenascin); fibronectin type-III, heparin,	99.22
3t1w_A	375	Four-domain fibronectin fragment; human fibronecti	99.21
2ede_A	114	Netrin receptor DCC; tumor suppressor protein DCC,	99.21
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.21
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.21
2ed9_A	124	Netrin receptor DCC; tumor suppressor protein DCC,	99.21
1zlg_A	680	Anosmin 1; insulin-like growth factor receptor Cys	99.21
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.21

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=100.00  E-value=5.6e-31  Score=202.53  Aligned_cols=240  Identities=20%  Similarity=0.242  Sum_probs=183.8

Q ss_pred             CCCCeeccCCCCceEEE--ECC--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCce----eEEEee
Q psy11549          1 MAGGIPLAHNTSARIIL--SNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRI----VIVGAS   72 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~--~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~----~~~~~~   72 (261)
                      +|||.++..+..+..+.  .++  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+..+..    ....+.
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~  117 (305)
T 2nzi_A           39 YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHAL  117 (305)
T ss_dssp             EETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEEECEEEEECCCHHHHSSCCEEEE
T ss_pred             EECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCCCCc-cceEEEEEecCCccCCCccccccccEEec
Confidence            47888887554444332  233  89999999999999999999998876 7788999998887654331    225678


Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEec-CCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTP-VTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      .|+.+.|.|.+.+.|.+ .+.|++++.... ......+........|.|.+ +..+|.|.|+|.|.|..|....  .+.+
T Consensus       118 ~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~--~~~l  193 (305)
T 2nzi_A          118 RGEVVSIKIPFSGKPDP-VITWQKGQDLID-NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQK--TVEL  193 (305)
T ss_dssp             TTCCEEEEEEEEEESCC-EEEEEESSSBCC-SSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEE--EEEE
T ss_pred             CCCEEEEEEEECCCCCC-EEEEEECCEECC-CCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceee--EEEE
Confidence            99999999999999888 899999774211 11222233344556899999 9999999999999999988766  4556


Q ss_pred             EeCCCCCCCCcceEEeecCCeEEEEeecC-CCCCCCe-EEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEE
Q psy11549        152 VLAGKPQPPQNCSVRNETTSSVHISCTPG-YDGGLPQ-TFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       152 ~~~~~p~~p~~~~v~~~~~~~~~l~c~~~-~~~~~p~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      .+..+|.+|..+.+....+..+.|.|.++ .+++.++ .|.+.++.....  .| .........+.|.+  |.++..|.|
T Consensus       194 ~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~--~w~~~~~~~~~~~~i~~--l~~~~~y~~  269 (305)
T 2nzi_A          194 DVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAE--RWLRVGQARETRYTVIN--LFGKTSYQF  269 (305)
T ss_dssp             EEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSC--CEEEEEEESSSEEEECS--CCSSCEEEE
T ss_pred             EEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCC--ccEECccccCceEEecC--CCCCCeEEE
Confidence            66688999998888878899999999964 4556665 488888776544  34 22222367899999  899999999


Q ss_pred             EEEEEcCCCcCCceeeeeeee
Q psy11549        229 VISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      +|.|.|..|.+++|.......
T Consensus       270 ~~~A~N~~G~~~~S~~~~~~~  290 (305)
T 2nzi_A          270 RVIAENKFGLSKPSEPSEPTI  290 (305)
T ss_dssp             EEEEEETTEECCCCCCCCCEE
T ss_pred             EEEEEeCCcccCCcCCCCCEE
Confidence            999999999999998876443

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=100.00  E-value=1.1e-30  Score=207.44  Aligned_cols=242  Identities=21%  Similarity=0.376  Sum_probs=184.6

Q ss_pred             CC--CeeccCC----CCceEEEE---CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEee
Q psy11549          2 AG--GIPLAHN----TSARIILS---NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGAS   72 (261)
Q Consensus         2 ~n--g~~l~~~----~~~~~~~~---~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~   72 (261)
                      ||  |.+|...    +.+.....   +++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...... ..+.
T Consensus        36 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~P~~~~~~~~-~~~~  113 (389)
T 2jll_A           36 RAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGH-QKSMYLDIEYAPKFISNQTI-YYSW  113 (389)
T ss_dssp             ETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEECCSCCE-EEEC
T ss_pred             eCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEEeCCCCc-ceEEEEEEEeCCEEecCcce-EEec
Confidence            55  7887532    23344332   3589999999999999999999999987 77899999999988765543 5778


Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      .|+.+.|.|.+.+.|.+ .+.|++++....... .............|.|.++..+|+|.|+|.|.|..|....  .+.+
T Consensus       114 ~g~~~~l~C~~~g~p~~-~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~--~~~l  190 (389)
T 2jll_A          114 EGNPINISCDVKSNPPA-SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQ--EYIL  190 (389)
T ss_dssp             TTCCEEEEECEEEESCC-EEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEE--EEEE
T ss_pred             cCCEEEEEEEEEecCCC-eEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEE--EEEE
Confidence            99999999999999887 899999874322111 1112223444568999999999999999999999988766  4556


Q ss_pred             EeCCCCCCCCcceEEeecCCeEEEEeecC-CCCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        152 VLAGKPQPPQNCSVRNETTSSVHISCTPG-YDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       152 ~~~~~p~~p~~~~v~~~~~~~~~l~c~~~-~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      .+..+|.+|..+.+.......+.|.|.++ .+++.|+. |.+.|+..+...............+.|.+  |.++..|.|+
T Consensus       191 ~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~--l~~~~~y~~~  268 (389)
T 2jll_A          191 ALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNN--LEPNTTYEIR  268 (389)
T ss_dssp             EECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECS--CCTTCEEEEE
T ss_pred             EecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECC--ccCCCEEEEE
Confidence            66788888888877777889999999964 35566764 88888876654222222233457899999  9999999999


Q ss_pred             EEEEcCCCcCCceeeeeeeec
Q psy11549        230 ISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      |.|.|..|.+.+|..+.+...
T Consensus       269 v~A~N~~G~~~~s~~~~~~t~  289 (389)
T 2jll_A          269 VAAVNGKGQGDYSKIEIFQTL  289 (389)
T ss_dssp             EEEEESSCBCCCCCCEEEECC
T ss_pred             EEEEcCCccCCCCcceEEEec
Confidence            999999999999988776653

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.97  E-value=1.3e-28  Score=187.49  Aligned_cols=236  Identities=17%  Similarity=0.217  Sum_probs=166.9

Q ss_pred             CCCCeeccCCCCceEEEE--CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEE
Q psy11549          1 MAGGIPLAHNTSARIILS--NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVD   78 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~   78 (261)
                      +|||.++...........  +.+|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|..+|.+.........+..|+.+.
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~  118 (284)
T 2rik_A           40 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR  118 (284)
T ss_dssp             EETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCEEEECCCSEEEEETTCCEE
T ss_pred             EECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCceE-EEEEEEEccCCCcccccCCCceEecCCceEE
Confidence            478888875444333333  3589999999999999999999998876 6788999998888765443336688999999


Q ss_pred             EEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549         79 IHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus        79 l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      |.|.+.+.|.+ .+.|++++.... ...............|.|.++..+|+|.|+|.+.|..|.....  +.+.+..+|.
T Consensus       119 l~C~~~g~p~~-~v~W~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~~~p~  194 (284)
T 2rik_A          119 YECKIGGSPEI-KVLWYKDETEIQ-ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS--TSLKVKEPPV  194 (284)
T ss_dssp             EEEEEESSSCC-EEEEEETTEECC-CSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEE--EEEEEECCCB
T ss_pred             EEEEEeeeCCC-EEEEEECCEECc-CCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEE--EEEEEecCCc
Confidence            99999988877 899999874221 1222233344556689999999999999999999998877664  4444545553


Q ss_pred             ---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc--eeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        159 ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       159 ---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                         .|..  +....|..+.|.|.+  .+..++.+.| ++......  ..+ .........|.|.+++..|.|.|  +|.|
T Consensus       195 ~~~~~~~--~~~~~g~~v~l~C~~--~g~p~~~v~W-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y--~C~a  267 (284)
T 2rik_A          195 FRKKPHP--VETLKGADVHLECEL--QGTPPFQVSW-HKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY--QCKA  267 (284)
T ss_dssp             CCSCCCC--EEECTTCCEEEEEEC--BSSSCCEEEE-EETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEE--EEEE
T ss_pred             ceeCCCc--ceecCCCeEEEEEEE--EecCCCEEEE-EECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEE--EEEE
Confidence               3333  333569999999997  3333344444 44322211  011 11222335788999999999999  9999


Q ss_pred             EcCCCcCCceeeeeee
Q psy11549        233 VNAKGRSLPVIWDDFS  248 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~  248 (261)
                      .|..|....+..+.++
T Consensus       268 ~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          268 SNDVGSYTCVGSITLK  283 (284)
T ss_dssp             EETTEEEEEEEEEEEC
T ss_pred             EeCCCceeEEEEEEEc
Confidence            9999987776666553

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.97  E-value=9.7e-29  Score=188.75  Aligned_cols=241  Identities=15%  Similarity=0.228  Sum_probs=163.5

Q ss_pred             CCeeccCCCCceEEEECC---eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549          3 GGIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      ||..+..+.+ .....++   +|.|.+++.+|+|.|+|.+.|..|...+..+.|.|..+|.+...... ..+..|+.+.|
T Consensus        41 ~g~~~~~~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~-~~v~~G~~v~l  118 (291)
T 2wim_A           41 QGEKIISTQR-VVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP-QEFKQGEDAEV  118 (291)
T ss_dssp             TCCBCCCBTT-EEEEEETTEEEEEECSCCGGGCEEEEEEEECSSSCEEEEEEEEEEECCCBCCSCCCS-EEEETTSCEEE
T ss_pred             CCcCccCCCc-EEEecCCCEEEEEEccCCcccCEEEEEEEecccCceEEEEEEEEecCCcceEeCCCC-hhhcCCCCEEE
Confidence            7777764333 4444433   89999999999999999999998887566788888877766544443 66889999999


Q ss_pred             EEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCC
Q psy11549         80 HCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP  159 (261)
Q Consensus        80 ~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~  159 (261)
                      .|.+.+.|.+ .+.|++++.... .....++..... ..|.|.++..+|.|.|+|.+.+..+.......+.+.+..+|..
T Consensus       119 ~C~~~~~p~~-~v~W~~~~~~~~-~~~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~  195 (291)
T 2wim_A          119 VCRVSSSPAP-AVSWLYHNEEVT-TISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAI  195 (291)
T ss_dssp             CCCCBCSSCC-EEEEECC----C-BCCCSSEEECTT-SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCC
T ss_pred             EEEEccCCCC-EEEEEECCcccc-ccCCceEEEccC-CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCcc
Confidence            9999998887 899998874322 222333333222 3699999999999999999998875544433555555555542


Q ss_pred             CCcc---eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcccee-EEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        160 PQNC---SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL-VNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       160 p~~~---~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      ....   .+....|+.+.|.|.+  . +.|.....|+++....... ..........|.|.++..+|.|.|  +|.|.|.
T Consensus       196 ~~~~~~~~~~~~~g~~~~l~C~~--~-g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y--~C~a~N~  270 (291)
T 2wim_A          196 SMPQKSFNATAERGEEMTFSCRA--S-GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPY--VCRATNK  270 (291)
T ss_dssp             BCSCSEEECCSSSCCEEEEECBC--C-CBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEE--EEEEEET
T ss_pred             ccCcccccceecCCCeEEEEEEe--e-cCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEE--EEEEEEC
Confidence            2111   2233569999999997  3 3343334444543221110 011223457899999999999999  9999999


Q ss_pred             CCcCCceeeeeeeecccc
Q psy11549        236 KGRSLPVIWDDFSMSGAH  253 (261)
Q Consensus       236 ~G~~~~s~~~~~~~~~~~  253 (261)
                      +|..+.+..+.+..++++
T Consensus       271 ~G~~~~~~~l~v~~~~~~  288 (291)
T 2wim_A          271 AGEDEKQAFLQVFVQHHH  288 (291)
T ss_dssp             TEEEEEEEEEEC------
T ss_pred             CCceeeeEEEEEEEeccc
Confidence            999999999998876554

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.97  E-value=5.6e-29  Score=190.07  Aligned_cols=237  Identities=18%  Similarity=0.229  Sum_probs=164.4

Q ss_pred             CCeeccCCCCceEEEE----CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEE
Q psy11549          3 GGIPLAHNTSARIILS----NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVD   78 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~   78 (261)
                      ||.++..+..+.....    +.+|.|.+++.+|+|.|+|.+.|..|...+..+.|.|..+|.+...+.. ..+..|+.+.
T Consensus        41 ~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~  119 (291)
T 1qz1_A           41 NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP-QEFKEGEDAV  119 (291)
T ss_dssp             TSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCSEEEECCSS-EEEETTSCEE
T ss_pred             CCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCeeEEEEEEEeeccccccCCCCc-ccccCCCeEE
Confidence            8888875555444432    3589999999999999999999998766577888888888776655444 6678999999


Q ss_pred             EEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549         79 IHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus        79 l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      |.|.+.+.|.+ .+.|++++..... ....++..... ..|.|.++..+|+|.|+|.+.|..+.......+.+.+..+|.
T Consensus       120 l~C~~~~~p~~-~v~W~~~~~~~~~-~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~  196 (291)
T 1qz1_A          120 IVCDVVSSLPP-TIIWKHKGRDVIL-KKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPT  196 (291)
T ss_dssp             ECCEEECSSCC-EEEEEETTSCSST-TCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEE
T ss_pred             EEEEeccCCCC-EEEEEECCEEccc-CCCceEEEccC-CcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCc
Confidence            99999998887 8999998753222 22223333222 369999999999999999999876444333345555544443


Q ss_pred             C---CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcccee-----EEEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        159 P---PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL-----VNLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       159 ~---p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .   +....+....|+.+.|.|.+  .+..++.+. |+++.......     ..........|.|.++..+|.|.|  +|
T Consensus       197 ~~~~~~~~~~~~~~g~~v~l~C~~--~g~p~p~i~-W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y--~C  271 (291)
T 1qz1_A          197 VQARQSIVNATANLGQSVTLVCDA--DGFPEPTMS-WTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY--VC  271 (291)
T ss_dssp             EEESCSEEEEETTSCCCEEEEEEE--EEESCCEEE-EEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEE--EE
T ss_pred             ccccccccccccccCceEEEEEEE--EEeCCCcEE-EEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEE--EE
Confidence            1   11123344579999999997  333333444 44443221110     111223346799999999999999  99


Q ss_pred             EEEcCCCcCCceeeeeee
Q psy11549        231 SGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~~  248 (261)
                      .|.|..|....+..+.|.
T Consensus       272 ~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          272 IAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCceEEEEEEEEE
Confidence            999999988777776664

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.97  E-value=1.5e-28  Score=204.24  Aligned_cols=234  Identities=17%  Similarity=0.274  Sum_probs=169.8

Q ss_pred             CCCCeeccCCCCceEEEEC--CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEE
Q psy11549          1 MAGGIPLAHNTSARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVD   78 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~--~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~   78 (261)
                      ||||.+|..+........+  ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+.. ..+.+|+.+.
T Consensus       326 ~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~P~~~~~~~~-~~~~~G~~v~  403 (570)
T 3b43_A          326 YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKPHP-VETLKGADVH  403 (570)
T ss_dssp             EETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCC-EEEEEECEECCCEECSCCCC-EEECTTCCEE
T ss_pred             eECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEE-EEEEEEEecCCCeeecCCCc-eeecCCCEEE
Confidence            5789998755443333333  479999999999999999999999987 66789999999988766554 6678999999


Q ss_pred             EEEEEeeCCCCceeEEEEcCCccccccC-CceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCC
Q psy11549         79 IHCAVEADPPARSFKWKFNNSGETLDVG-SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP  157 (261)
Q Consensus        79 l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p  157 (261)
                      |.|.+.+.|.| .+.|++++..  +... ...+...+....|.|.++..+|+|.|+|.|.|..|.....  ..+.+..+|
T Consensus       404 l~C~~~g~P~p-~v~W~k~g~~--l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~--~~l~v~~~P  478 (570)
T 3b43_A          404 LECELQGTPPF-QVSWHKDKRE--LRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCV--GSITLKAPP  478 (570)
T ss_dssp             EEEEEESSSSC-CCEEEETTEE--CCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEE--EEEEECCCC
T ss_pred             EEEEEecCCCC-EEEEEECCEE--CcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEE--EEEEeccCC
Confidence            99999999988 8999998742  2221 2222334445679999999999999999999999987764  445555666


Q ss_pred             C---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc---ceeEEE-ecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        158 Q---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL---NLLVNL-TNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       158 ~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .   .+.+..  ...|+.+.|.|.+  .+..++.+.| +++....   ...... .......|.|.++..+|+|.|  +|
T Consensus       479 ~~~~~~~~~~--~~~g~~~~l~c~~--~g~p~~~v~W-~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y--~C  551 (570)
T 3b43_A          479 RFVKKLSDIS--TVVGEEVQLQATI--EGAEPISVAW-FKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKY--TC  551 (570)
T ss_dssp             EEEECCCCBC--CBTTCCEEEEEEE--ESCSSCCCEE-EETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEE--EE
T ss_pred             cccccCCCce--ecCCCeEEEEEEE--ecCCCCEEEE-EeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEE--EE
Confidence            4   333333  3469999999997  3433444444 4432111   001111 112335799999999999999  99


Q ss_pred             EEEcCCCcCCceeeeeee
Q psy11549        231 SGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~~  248 (261)
                      .|.|.+|..+.+..+.|.
T Consensus       552 ~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          552 QIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             EEECSSCEEEEEEEECCB
T ss_pred             EEEECCcEEEEEEEEEEe
Confidence            999999999888877663

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.96  E-value=2.9e-28  Score=202.64  Aligned_cols=237  Identities=17%  Similarity=0.207  Sum_probs=167.9

Q ss_pred             CCCCeeccCCCCceEEEEC--CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEE
Q psy11549          1 MAGGIPLAHNTSARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVD   78 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~--~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~   78 (261)
                      +|||++|..+........+  .+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+.........+..|+.+.
T Consensus       232 ~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~  310 (570)
T 3b43_A          232 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR  310 (570)
T ss_dssp             EETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEE-EEEEEECCBCCCEEEECCCSBCCEESSCEEE
T ss_pred             EECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcE-EEEEEEEeecCCcccccCCCccEEcCCCcEE
Confidence            4789998755443333332  489999999999999999999999887 6778999998888764433224567999999


Q ss_pred             EEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549         79 IHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus        79 l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      |.|.+.+.|.+ .+.|++++.... .....++........|.|.++..+|+|.|+|.|.|..|.......  +.+..+|.
T Consensus       311 l~C~~~g~P~p-~v~W~k~~~~l~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~--l~V~~~P~  386 (570)
T 3b43_A          311 YECKIGGSPEI-KVLWYKDETEIQ-ESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTS--LKVKEPPV  386 (570)
T ss_dssp             EEEEEESSSSC-EEEEEETTEECC-CSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEE--ECEECCCE
T ss_pred             EEEEEeeCCCC-EEEEeECCEECC-CCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEE--EEecCCCe
Confidence            99999999888 899999874221 122223333445568999999999999999999999998777544  44445553


Q ss_pred             ---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc--eeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        159 ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       159 ---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                         .|..  +....|..+.|.|.+  . +.|..-+.|+++.....  ..+ .........|.|.++..+|.|.|  +|.|
T Consensus       387 ~~~~~~~--~~~~~G~~v~l~C~~--~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y--~C~A  459 (570)
T 3b43_A          387 FRKKPHP--VETLKGADVHLECEL--Q-GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY--QCKA  459 (570)
T ss_dssp             ECSCCCC--EEECTTCCEEEEEEE--E-SSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEE--EEEE
T ss_pred             eecCCCc--eeecCCCEEEEEEEE--e-cCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEE--EEEE
Confidence               3333  333569999999997  3 44433233444432211  112 12222235788999999999999  9999


Q ss_pred             EcCCCcCCceeeeeeee
Q psy11549        233 VNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~  249 (261)
                      .|.+|....+..+.+..
T Consensus       460 ~N~~G~~~~~~~l~v~~  476 (570)
T 3b43_A          460 SNDVGSDTCVGSITLKA  476 (570)
T ss_dssp             ECSSCEEEEEEEEEECC
T ss_pred             EECCCeEEEEEEEEecc
Confidence            99999877766665543

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.95  E-value=2.5e-27  Score=182.13  Aligned_cols=236  Identities=18%  Similarity=0.253  Sum_probs=148.8

Q ss_pred             CCCCeeccCCCCceEEEEC---CeEEEccCCC-CCCEeEEEEEEeCCCcceeeeEEEEEEee-------ceeecCceeEE
Q psy11549          1 MAGGIPLAHNTSARIILSN---QSLVLQKVSR-QSAGTYKCSAINTKGEATSNQLKLRVKYA-------PICKSDRIVIV   69 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~---~~L~i~~~~~-~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~-------p~~~~~~~~~~   69 (261)
                      +|||+++...........+   .+|.|.+++. +|+|.|+|.|.|..|.. +..+.|.|...       |.+...+.. .
T Consensus        41 ~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~p~~~p~i~~~~~~-~  118 (304)
T 2yd9_A           41 NKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEI-TVHAKLTVLREDQLPSGFPNIDMGPQL-K  118 (304)
T ss_dssp             C-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEEECSSCEE-CCEEEEEEECGGGCCTTCCEEEECCCC-E
T ss_pred             EECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEEECCCCeE-EEEEEEEEeccccCCCCCCeeecCCcc-E
Confidence            5788888533222222233   4799999998 99999999999998885 67789999865       444433333 5


Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee-EE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP-CL  148 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~  148 (261)
                      .+..|+.+.|.|.+.+.|.+ .+.|++++..........++.... ...|.|.++..+|+|.|+|.+.|..|..... ..
T Consensus       119 ~v~~g~~v~l~C~~~g~p~~-~v~W~k~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~  196 (304)
T 2yd9_A          119 VVERTRTATMLCAASGNPDP-EITWFKDFLPVDPSASNGRIKQLR-SGALQIESSEETDQGKYECVATNSAGVRYSSPAN  196 (304)
T ss_dssp             EEETTSCEEECCEEECSSCC-EEEEEETTEECCGGGGTTSEEECT-TSCEEECSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred             EEeCCCeEEEEEECccCCCC-eEEEEECCEECcCCCCcceEEeCC-CeEEEEccCCcccCEEEEEEEEeCCCCEEeccEE
Confidence            67899999999999998888 899999874322211122332222 2379999999999999999999998876543 35


Q ss_pred             EEEEeC-CCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCcc
Q psy11549        149 YQVVLA-GKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTV  224 (261)
Q Consensus       149 ~~v~~~-~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~  224 (261)
                      +.+.+. .+|.   .|....+  ..|+.+.|.|.+  . +.|...+.|+++......... .......+.|.+  ++++|
T Consensus       197 l~v~~~~~~P~~~~~~~~~~v--~~G~~v~l~C~~--~-g~p~p~v~W~~~~~~l~~~~~-~~~~~~~L~i~~--~~d~G  268 (304)
T 2yd9_A          197 LYVRVQNVAPRFSILPMSHEI--MPGGNVNITCVA--V-GSPMPYVKWMQGAEDLTPEDD-MPVGRNVLELTD--VKDSA  268 (304)
T ss_dssp             EEEECCCEEEEEEECCCCBCC--CTTCCEEEEEEE--E-EESCCEEEEEETTEECSCSSS-CCBSEEEEEECS--CCSCE
T ss_pred             EEEEeeccCCcEEecCCceEE--cCCCeEEEEEEE--e-eeCCCEEEEEECCEECCCccc-ccCCcEEEEEcc--cccCE
Confidence            555442 2221   2233222  469999999997  3 334333344444322110000 111223467777  78999


Q ss_pred             EEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        225 LMRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       225 ~Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      .|  +|.|.|.+|....+..+.+..+
T Consensus       269 ~Y--~C~a~N~~G~~~~~~~l~V~~~  292 (304)
T 2yd9_A          269 NY--TCVAMSSLGVIEAVAQITVKSL  292 (304)
T ss_dssp             EE--EEEEEETTEEEEEEEEEC----
T ss_pred             EE--EEEEEeCCCcEEEEEEEEEecC
Confidence            99  9999999998887777776543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.95  E-value=6.4e-27  Score=185.56  Aligned_cols=231  Identities=16%  Similarity=0.264  Sum_probs=155.8

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcce--eeeEEEEEE-------eeceeecCceeEEEe
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT--SNQLKLRVK-------YAPICKSDRIVIVGA   71 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~--s~~~~l~V~-------~~p~~~~~~~~~~~~   71 (261)
                      +|||.++..+..+.....+++|.|.+++.+|+|.|+|.|.|..+...  .....+.+.       ..|.+.........+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~  217 (384)
T 3kld_A          138 IFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPA  217 (384)
T ss_dssp             EETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEE
T ss_pred             EECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEe
Confidence            36777776444444444567999999999999999999999877542  112233332       233333222222567


Q ss_pred             eCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      ..|+.+.|.|.+.+.|.| .+.|++++. ..+.. ..+  .......|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus       218 ~~G~~v~l~C~~~g~P~p-~i~W~k~~~-~~~~~-~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v  292 (384)
T 3kld_A          218 EKGTTVKLECFALGNPVP-TILWRRADG-KPIAR-KAR--RHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF  292 (384)
T ss_dssp             ETTSCEEEEEEEEEESCC-EEEEEETTC-CCCCT-TCE--ECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCcEEEEEEEeecCCC-cEEEEeCCC-ccccc-cce--ecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            899999999999999988 899998543 22211 111  1222347999999999999999999999998777555554


Q ss_pred             EeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--eEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        152 VLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--LVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       152 ~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      .  .+|.   .+.+..  ...|..+.|.|.+   .+.|..-+.|+++......  ....   ....+.|.++..+|.|.|
T Consensus       293 ~--~~P~~~~~~~~~~--v~~g~~v~l~C~~---~g~P~p~i~W~k~g~~l~~~~~~~~---~~~~L~i~~v~~~D~G~Y  362 (384)
T 3kld_A          293 Y--AQPNWVQIINDIH--VAMEESVFWECKA---NGRPKPTYRWLKNGDPLLTRDRIQI---EQGTLNITIVNLSDAGMY  362 (384)
T ss_dssp             E--EEEEEEECCCCEE--ECTTCCEEEECEE---EEESCCEEEEEETTEECCCBTTEEE---ETTEEEESSCCGGGCEEE
T ss_pred             e--cCCccccCCCceE--ecCCCCEEEEeEC---CccCCCeEEEEECCEECCCCccEEE---eCCEEEEeecChhhCEEE
Confidence            4  3332   333333  3569999999997   3444333344454322211  1111   235899999999999999


Q ss_pred             EEEEEEEcCCCcCCceeeeeee
Q psy11549        227 RVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       227 ~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                        +|.|.|.+|....+..+.|.
T Consensus       363 --~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          363 --QCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             --EEEEEETTEEEEEEEEEEEC
T ss_pred             --EEEEEeCCceEEeceEEEEe
Confidence              99999999988888777664

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.95  E-value=3.5e-27  Score=183.64  Aligned_cols=239  Identities=18%  Similarity=0.242  Sum_probs=117.0

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece--------------------
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI--------------------   60 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~--------------------   60 (261)
                      +|||.+|..+.  +....+++|.|.+++.+|+|.|+|.+.|. +.. +..+.|.|...|.                    
T Consensus        44 ~k~g~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~  119 (334)
T 1ry7_B           44 VKDGTGLVPSE--RVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRV-LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA  119 (334)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             EECCeeCCCcc--cEEeccceEEEeecccccCEEEEEEEEeC-CeE-EEEEEEEEeccCccccccccccccccccccCCC
Confidence            57888885432  34446789999999999999999999998 554 5667777775432                    


Q ss_pred             --eecCc---eeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         61 --CKSDR---IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        61 --~~~~~---~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                        +..+.   .....+..|+.+.|.|.+.+.|.+ .+.|++++...........+........|.|.++..+|+|.|+|.
T Consensus       120 p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  198 (334)
T 1ry7_B          120 PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV  198 (334)
T ss_dssp             CCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCC-EEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEE
T ss_pred             CEEeccccccceeEEecCCCcEEEEEEccCCCCC-eEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEE
Confidence              22111   122567899999999999988877 899999874322111111122333445799999999999999999


Q ss_pred             EEcCCceEEeeEEEEEEeCCC--CC----CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEe----CCcc----ce
Q psy11549        136 AQNAIGTQVTPCLYQVVLAGK--PQ----PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYS----ASDL----NL  201 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~~~~~--p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~----~~~~----~~  201 (261)
                      +.|..|.......+.|....+  |.    .|..  .....|+.+.|.|.+  . +.|.....|++.    ....    ..
T Consensus       199 a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~--~~~~~G~~v~l~C~~--~-g~p~p~v~W~~~~~~~g~~~~~~~~~  273 (334)
T 1ry7_B          199 VENKFGSIRQTYTLDVLERSPHRPILQAGLPAN--QTAVLGSDVEFHCKV--Y-SDAQPHIQWLKHVEVNGSKVGPDGTP  273 (334)
T ss_dssp             EEETTEEEEEEEEEEEECCCCSSCBCCTTCSCC--EEEESSCCEEECCCC--B-CSSCEEEEEEECCCGGGCSBCTTSSB
T ss_pred             EEeCCCCEEEEEEEEEecCCCCCCceEecCCCc--eEEeCCCCEEEEEEE--e-cCCCCeEEEEECCcCCCccccCCCCe
Confidence            999988776654454443211  11    1222  333569999999997  3 445443444442    1110    00


Q ss_pred             eEEEe--------cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeecc
Q psy11549        202 LVNLT--------NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       202 ~~~~~--------~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~  251 (261)
                      .....        ......|.|.+++..|.|.|  +|.|.|..|....+..+.+....
T Consensus       274 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y--~C~a~N~~G~~~~~~~l~V~~~~  329 (334)
T 1ry7_B          274 YVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY--TCLAGNSIGFSHHSAWLVVLPAE  329 (334)
T ss_dssp             CCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEE--EEEEEESSCCEEEEEEEEEECSC
T ss_pred             eEEEeecCccccccccccEEEEccCCHHHCEEE--EEEEeCCCCeEEEEEEEEEEECC
Confidence            00000        01123799999999999999  99999999998888888776543

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.95  E-value=5.1e-27  Score=187.19  Aligned_cols=236  Identities=18%  Similarity=0.226  Sum_probs=163.4

Q ss_pred             CCCCeeccC--CCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceee------cCceeEEEee
Q psy11549          1 MAGGIPLAH--NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK------SDRIVIVGAS   72 (261)
Q Consensus         1 ~~ng~~l~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~------~~~~~~~~~~   72 (261)
                      +|||.++..  ...+.....+++|.|.+++.+|+|.|+|.+.|..+...+..+.|.|...|...      ..... ..+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~-~~~~  234 (403)
T 3laf_A          156 QKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSN-VIAI  234 (403)
T ss_dssp             EESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCC-EEEE
T ss_pred             EECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCc-eEec
Confidence            467887752  23445555678999999999999999999999887765567788887665322      12222 5677


Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      .|+.+.|.|.+.+.|.+ .+.|++++..  +......+.... ...|.|.++..+|+|.|+|.+.|..|.......+.+.
T Consensus       235 ~g~~~~l~C~~~~~p~~-~~~W~~~~~~--~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  310 (403)
T 3laf_A          235 EGKDAVLECCVSGYPPP-SFTWLRGEEV--IQLRSKKYSLLG-GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVL  310 (403)
T ss_dssp             TTSCEEECCEEEEESCC-EEEEEETTEE--CCCSSSSEEEET-TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEcCCCCCC-eEEEEECCee--ccCCCceEEECC-ccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence            99999999999998888 8999997742  222233333222 2369999999999999999999998877765455444


Q ss_pred             eCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        153 LAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       153 ~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                        .+|.   .|...  ....|..+.|.|.+  .+..+..+. |+++.................|.|.++..+|.|.|  +
T Consensus       311 --~~p~~~~~~~~~--~~~~g~~v~l~C~~--~g~p~p~v~-W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y--~  381 (403)
T 3laf_A          311 --VPPWFLNHPSNL--YAYESMDIEFECAV--SGKPVPTVN-WMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFY--Q  381 (403)
T ss_dssp             --EEEEEEECCCCE--ECCTTCCEEECCEE--EEESCCEEE-EEETTEECCCSSSEEEETTTEEEESSCCGGGCEEE--E
T ss_pred             --CCCcEeecCcce--EEecCCeEEEEEEE--eeccCCEEE-EEECCEECCCCCcEEEecCccEEEeccccccCEEE--E
Confidence              3442   33333  33569999999997  333334444 44433221101111112347899999999999999  9


Q ss_pred             EEEEcCCCcCCceeeeeeeec
Q psy11549        230 ISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      |.|.|..|....+..+.+..+
T Consensus       382 C~a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          382 CVAENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             EEEEETTEEEEEEEEEECCCC
T ss_pred             EEEEcCCceEEEEEEEEEeCC
Confidence            999999999888877776543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.95  E-value=5.6e-26  Score=191.48  Aligned_cols=228  Identities=18%  Similarity=0.260  Sum_probs=162.1

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~   80 (261)
                      +|||++|..+........+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|..+|...........+..|+.+.|.
T Consensus       323 ~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~  402 (642)
T 1e07_A          323 WVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLS  402 (642)
T ss_pred             EECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEE
Confidence            47898886544433334567999999999999999999999998766677899998777543222222567899999999


Q ss_pred             EEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCC
Q psy11549         81 CAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP  160 (261)
Q Consensus        81 C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p  160 (261)
                      |.+.+.|.+ .+.|++++..  +.  .        ...|.|.++..+|.|.|+|.|.|..|....+..+.+.+..++.+|
T Consensus       403 C~~~g~p~~-~i~W~~~g~~--~~--~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p  469 (642)
T 1e07_A          403 CHAASNPPA-QYSWLIDGNI--QQ--H--------TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKP  469 (642)
T ss_pred             EEcCccCCC-eEEEEECCEE--cC--C--------CceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCc
Confidence            999998888 8999998742  21  1        236999999999999999999999887766556667665544433


Q ss_pred             Cc---ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--eEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        161 QN---CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--LVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       161 ~~---~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      ..   .......|+.+.|.|.+.   +.+..+.|+ ++......  ..... .....|.|.++...|.|.|  +|.|.|.
T Consensus       470 ~i~~~~~~~v~~g~~v~l~C~~~---~~~~~i~W~-~~g~~l~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y--~C~a~n~  542 (642)
T 1e07_A          470 SISSNNSKPVEDKDAVAFTCEPE---AQNTTYLWW-VNGQSLPVSPRLQLS-NGNRTLTLFNVTRNDARAY--VCGIQNS  542 (642)
T ss_pred             eEecCCceeecCCCeEEEEEECC---CCCcEEEEE-ECCEeCCCCCcEEEc-CCCcEEEEeecChhcCceE--EEEeEcC
Confidence            21   112234699999999983   334445554 43322211  11222 2346899999999999999  9999999


Q ss_pred             CCcCCc-eeeeeee
Q psy11549        236 KGRSLP-VIWDDFS  248 (261)
Q Consensus       236 ~G~~~~-s~~~~~~  248 (261)
                      .|.... +..+.+.
T Consensus       543 ~g~~~s~~~~l~V~  556 (642)
T 1e07_A          543 VSANRSDPVTLDVL  556 (642)
T ss_pred             CCCccCCCEEEEEE
Confidence            996543 3455554

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.95  E-value=4.1e-27  Score=183.62  Aligned_cols=242  Identities=14%  Similarity=0.081  Sum_probs=161.7

Q ss_pred             CCCCeec--cCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCc-eeEEEeeCCCcE
Q psy11549          1 MAGGIPL--AHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR-IVIVGASRSESV   77 (261)
Q Consensus         1 ~~ng~~l--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~-~~~~~~~~g~~~   77 (261)
                      +|||.++  ......++...+++|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|..++...... .....+..|+.+
T Consensus        60 ~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v  138 (339)
T 3o4o_C           60 HKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQILTLSTSG  138 (339)
T ss_dssp             EESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEEEETTSCE
T ss_pred             EECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCcceE-EEEEEEEEEcCCCccccccccceEEECCCCE
Confidence            4677774  333244666788999999999999999999999988765 667888888665432111 112467899999


Q ss_pred             EEEEE-----EeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCce----EEeeEE
Q psy11549         78 DIHCA-----VEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT----QVTPCL  148 (261)
Q Consensus        78 ~l~C~-----~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~----~~~~~~  148 (261)
                      .|.|.     +.+.|.+ .+.|++++.  .+.....++........|.|.++..+|+|.|+|.+.|..+.    ......
T Consensus       139 ~l~C~~~~~~~~g~p~~-~v~W~k~g~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~  215 (339)
T 3o4o_C          139 VLVCPDLSEFTRDKTDV-KIQWYKDSL--LLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE  215 (339)
T ss_dssp             EEECCSCTTTCCSSSCC-CBCCEESSC--BCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEE
T ss_pred             EEEecCCcccccCCCCc-eEEEecCCe--eCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEE
Confidence            99999     6777777 899999774  33333345555554458999999999999999999998763    333334


Q ss_pred             EEEEeCCCCCCCCc----ceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccc-------eeE--EEecCCCC---
Q psy11549        149 YQVVLAGKPQPPQN----CSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLN-------LLV--NLTNLDTP---  211 (261)
Q Consensus       149 ~~v~~~~~p~~p~~----~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~-------~~~--~~~~~~~~---  211 (261)
                      +.|.......+|..    ..+....|+.+.|.|.+....+.| ....+|+++.....       ...  ........   
T Consensus       216 l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  295 (339)
T 3o4o_C          216 LRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENY  295 (339)
T ss_dssp             EEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCE
T ss_pred             EEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceE
Confidence            44432221112211    111224599999999963334555 55556655433210       000  11111122   


Q ss_pred             ---cEEEcCCCCCCc-cEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        212 ---AFTLEDLGLDGT-VLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       212 ---~~~i~~~~l~~~-~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                         .|.|.++..+|. |.|  +|.|.|.+|.......+.+.
T Consensus       296 ~~~~L~i~~v~~~d~~G~Y--~C~a~N~~G~~~~~~~~~~~  334 (339)
T 3o4o_C          296 IEVPLIFDPVTREDLHMDF--KCVVHNTLSFQTLRTTVKEH  334 (339)
T ss_dssp             EEECCEECSSCCCSCCCCC--EEEEEETTEEECCBCCCCC-
T ss_pred             EEEEEEEEEechhhcCccE--EEEEEeccCceEEEEEhhHh
Confidence               799999999996 999  99999999988877766654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.94  E-value=1.8e-26  Score=179.24  Aligned_cols=232  Identities=13%  Similarity=0.139  Sum_probs=151.2

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCE-eEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAG-TYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      ||||.++....+ .  ..+++|.|.+++.+|+| .|+|.|.|..|......+.+.+..+|.+...... ..+..|+.+.|
T Consensus        73 ~k~~~~~~~~~~-~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~-~~~~~G~~v~L  148 (329)
T 3oq3_B           73 EKIGKTRRPLNR-R--VKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYE-LGTHDKYGIDL  148 (329)
T ss_dssp             EECSSSCEECST-T--EETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEE-TTSSTTTCEEE
T ss_pred             EECCCCccccCc-e--eecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccc-eEEeCCCcEEE
Confidence            467776654333 2  56889999999999999 9999999998775333333333344443322221 34567999999


Q ss_pred             EEEEeeCC-CCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC--CceEEe--eEEEEEEeC
Q psy11549         80 HCAVEADP-PARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA--IGTQVT--PCLYQVVLA  154 (261)
Q Consensus        80 ~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~--~~~~~v~~~  154 (261)
                      .|.+.+.| .+ .+.|++++..  +.....++...+  ..|.|.++..+|+|.|+|.|.|.  .|....  +..+.+.+.
T Consensus       149 ~C~~~g~p~~~-~i~W~k~~~~--l~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~  223 (329)
T 3oq3_B          149 YCGILYAKHYN-NITWYKNNQE--LIIDGTKYSQSG--QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVI  223 (329)
T ss_dssp             ECCCCSCCCCC-EEEEEETTEE--CCCSSSSEEEET--TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEE
T ss_pred             EeccCCCCCCc-eEEEEECCcc--CCCCCceEecCC--CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEE
Confidence            99999988 66 8999998743  323344444333  47999999999999999999986  443322  223555555


Q ss_pred             CCCC------CCCcceEEeecCCeEEEEeecCCCCCC--CeE-EEEEEEeCCc-ccee---E-EE-ec--CCCCcEEEcC
Q psy11549        155 GKPQ------PPQNCSVRNETTSSVHISCTPGYDGGL--PQT-FTLELYSASD-LNLL---V-NL-TN--LDTPAFTLED  217 (261)
Q Consensus       155 ~~p~------~p~~~~v~~~~~~~~~l~c~~~~~~~~--p~~-~~~~~~~~~~-~~~~---~-~~-~~--~~~~~~~i~~  217 (261)
                      .+|.      .|.  .+....|+.+.|.|.+  .+..  +.. ...|++.... ....   . .. ..  .....|.|.+
T Consensus       224 ~~~~~~~~~~~~~--~~~v~~G~~~~l~C~~--~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~  299 (329)
T 3oq3_B          224 PSQDHRFKLILDP--KINVTIGEPANITCTA--VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFEN  299 (329)
T ss_dssp             CCCCCCEEEECCS--EEEECTTSCEEEEEEE--EETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESS
T ss_pred             CCCCCCCceecCC--eeEEecCCCEEEEEEE--EECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEe
Confidence            5552      222  2444679999999997  3332  233 3344444322 1100   0 10 00  0236799999


Q ss_pred             CCCCCcc-EEEEEEEEEcCCCcCCceeeeee
Q psy11549        218 LGLDGTV-LMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       218 ~~l~~~~-~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      ++.+|.| .|  +|.|.|..|....+..+.+
T Consensus       300 v~~~D~G~~Y--~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          300 VTEEYIGNTY--TCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             CCGGGTTCEE--EEEEECSSCEEEEEEEEEE
T ss_pred             ccHHHCCCcE--EEEEEecCCceEEEEEEEe
Confidence            9999999 99  9999999998776655543

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.94  E-value=1.7e-26  Score=183.17  Aligned_cols=239  Identities=19%  Similarity=0.260  Sum_probs=157.4

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccC-CCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKV-SRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      +|||++|......+....+++|.|.++ +.+|+|.|+|.|.|..|...+..+.|.|.+.+.+.......+.+..|+.+.|
T Consensus        43 ~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l  122 (384)
T 3kld_A           43 KLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL  122 (384)
T ss_dssp             EETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEE
T ss_pred             EECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEE
Confidence            589999975544456667889999887 7899999999999999887666788888776654433323367889999999


Q ss_pred             EEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe---eEEEEEEeC--
Q psy11549         80 HCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT---PCLYQVVLA--  154 (261)
Q Consensus        80 ~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~---~~~~~v~~~--  154 (261)
                      .|.+....+...+.|++++..  ......++. ......|.|.++..+|+|.|+|.|.|..+....   ...+.+...  
T Consensus       123 ~C~~~~~~~~~~~~W~~~~~~--~~~~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~  199 (384)
T 3kld_A          123 LCGPPPHSGELSYAWIFNEYP--SYQDNRRFV-SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGV  199 (384)
T ss_dssp             CCCCCSEESCEEEEEEETTEE--CCCSSSEEE-CTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEE
T ss_pred             ecCCCCCCCCeEEEEEECCCC--CEeeccEEE-EcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCc
Confidence            997653333348999997742  222233332 223346999999999999999999998764321   112222110  


Q ss_pred             ---CCCC----CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEE
Q psy11549        155 ---GKPQ----PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       155 ---~~p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                         ..|.    .|..  +....|+.+.|.|.+   .+.|...+.|++..+...............|.|.+++.+|.|.| 
T Consensus       200 ~~~~~p~~~~~~~~~--~~~~~G~~v~l~C~~---~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y-  273 (384)
T 3kld_A          200 MGEYEPKIEVQFPET--VPAEKGTTVKLECFA---LGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSY-  273 (384)
T ss_dssp             CCCEEEEEEEECCSE--EEEETTSCEEEEEEE---EEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEE-
T ss_pred             ccccCCceeecCCCc--eEecCCCcEEEEEEE---eecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEE-
Confidence               1111    2222  333569999999997   44454444555533221101111123346899999999999999 


Q ss_pred             EEEEEEcCCCcCCceeeeeeee
Q psy11549        228 VVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       228 ~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                       +|.|.|..|....+..+.+..
T Consensus       274 -~C~a~N~~G~~~~~~~l~v~~  294 (384)
T 3kld_A          274 -ECVAENSRGKNVAKGQLTFYA  294 (384)
T ss_dssp             -EEEEEETTEEEEEEEEEEEEE
T ss_pred             -EEEEEcCCCeEEEEEEEEEec
Confidence             999999999877666666554

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.94  E-value=2.8e-27  Score=182.78  Aligned_cols=239  Identities=14%  Similarity=0.091  Sum_probs=150.9

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~   80 (261)
                      +|||++|..+........+.+|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|...|.+...... ..+..|+.+.|.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~~~~~-~~~~~g~~~~l~  119 (317)
T 2y25_A           42 YKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLVDEAFKELMMEVCK-KIALSATDLKIQ  119 (317)
T ss_dssp             EETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEE-EEEECCSTHHHHHHHHHHHH-HHHTCBCCCEEE
T ss_pred             EECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcE-EEEEEEEEecCccccccCCc-eecccCCCeEEE
Confidence            4788888744432333334599999999999999999999998876 45566665544432211111 223456666666


Q ss_pred             EEEee----------CCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         81 CAVEA----------DPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        81 C~~~~----------~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      |.+.+          .|.+ .+.|++++.... ......+........|.|.++..+|+|.|+|.+.|..|.......+.
T Consensus       120 c~~~~~~l~c~~~~~~p~~-~i~W~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  197 (317)
T 2y25_A          120 STAEGIQLYSFVTYYVEDL-KVNWSHNGSAIR-YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS  197 (317)
T ss_dssp             ECSSEEEEEEEBSSCCSSC-EEEEEESSSBCC-CCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred             eeccccEEEEEeccCCCCc-EEEEEECCEECC-CCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEe
Confidence            66554          4555 899999875322 12222334455556799999999999999999999888776643333


Q ss_pred             EEe----------------CC--CCC----CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--eEEEe
Q psy11549        151 VVL----------------AG--KPQ----PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--LVNLT  206 (261)
Q Consensus       151 v~~----------------~~--~p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~  206 (261)
                      +..                ..  +|.    .|..  +....|+.+.|.|.+  . +.|.....|+++......  .+...
T Consensus       198 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~v~~g~~~~l~C~~--~-g~p~p~i~W~~~g~~~~~~~~~~~~  272 (317)
T 2y25_A          198 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV--VTIQEGKALNLTCNV--W-GDPPPEVSWLKNEKALASDDHCNLK  272 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSE--EEEETTSBBCEEEEE--E-CSSCCEEEEEESSSEECCCSSEEEC
T ss_pred             eeeccccchhhcccCCcccCcCCCCcccccCCcc--EEEEcCCEEEEEEEE--e-cCCCCEEEEEECCEeCCCCCcEEEE
Confidence            211                00  110    1222  333569999999997  3 444333444554332211  11111


Q ss_pred             c--CCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        207 N--LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       207 ~--~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      .  .....|.|.+++..|+|.|  +|.|.|..|....+..+.+..+
T Consensus       273 ~~~~~~~~L~i~~v~~~d~G~Y--~C~a~N~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          273 FEAGRTAYFTINGVSTADSGKY--GLVVKNKYGSETSDFTVSVFIP  316 (317)
T ss_dssp             CBTTTEEEEEEBSCCSTTCEEE--EEEEEETTEEEEEEEEEEEECC
T ss_pred             EcCCCEEEEEECCCCHHHCEEE--EEEEEeCCCeEEEEEEEEEEcC
Confidence            1  2224899999999999999  9999999998887777777643

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.94  E-value=1e-25  Score=194.75  Aligned_cols=238  Identities=19%  Similarity=0.286  Sum_probs=167.4

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCC-CCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVS-RQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      +|||+++..+ .+.....+++|.|.++. .+|+|.|+|.|.|..|...+..+.|.|..+|.+.........+..|+.++|
T Consensus       561 ~k~~~~l~~~-~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L  639 (816)
T 3dmk_A          561 ERDNRALPIN-RKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTL  639 (816)
T ss_dssp             EETTEESCCS-TTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEE
T ss_pred             EECCeEcccC-CceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEE
Confidence            4788888654 34556678899999998 699999999999999876566788888887766543322245779999999


Q ss_pred             EEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC-
Q psy11549         80 HCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ-  158 (261)
Q Consensus        80 ~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~-  158 (261)
                      .|.+.+.+++..+.|++++..................+.|.|.++..+|+|.|+|.|.|..|.......+.|  ..+|. 
T Consensus       640 ~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V--~~~P~~  717 (816)
T 3dmk_A          640 HCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV--YVPPRW  717 (816)
T ss_dssp             EEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECE--EEEEEE
T ss_pred             EEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEE--EeCCce
Confidence            999987777668999998753211111111123345668999999999999999999999988877544444  34443 


Q ss_pred             --CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE------EEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        159 --PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV------NLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       159 --~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                        .|....+  ..|+.+.|.|.+  .+..++.+.| ++.....+...      .........|.|.+++..|.|.|  +|
T Consensus       718 ~~~~~~~~v--~~G~~v~l~C~~--~g~P~p~i~W-~k~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y--~C  790 (816)
T 3dmk_A          718 ILEPTDKAF--AQGSDAKVECKA--DGFPKPQVTW-KKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYY--LC  790 (816)
T ss_dssp             EECCCCEEE--ETTCCEEEECEE--EEESCCEEEC-CEECSSSTTCCBCCCCBTTEEEETTEEEECSCCGGGCEEE--EE
T ss_pred             eeeccccee--cCCCcEEEEEEE--ecCCCCeEEE-EecCCCCCccccccccCCCEEecCCEEEECcCChhhCeEE--EE
Confidence              3444333  469999999997  3333344444 44432211000      00011236899999999999999  99


Q ss_pred             EEEcCCCcCCceeeeeee
Q psy11549        231 SGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~~  248 (261)
                      .|.|.+|.+..+..+.+.
T Consensus       791 ~a~N~~G~~~~~v~~~~~  808 (816)
T 3dmk_A          791 EAINGIGSGLSAVIMISV  808 (816)
T ss_dssp             EEECSSSSCEEEEEEEEE
T ss_pred             EEEeCCCCCcEEEEEEEe
Confidence            999999998887777665

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.94  E-value=2.2e-25  Score=183.62  Aligned_cols=239  Identities=15%  Similarity=0.135  Sum_probs=162.2

Q ss_pred             CCeeccCCCCceEEEECCeEEEccCCCCCCE-eEEEEEEeCCCcceeeeEEEEEE----eeceeecCceeEEEeeCCCcE
Q psy11549          3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAG-TYKCSAINTKGEATSNQLKLRVK----YAPICKSDRIVIVGASRSESV   77 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~~~~~~~~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~   77 (261)
                      ||+++.. +.+.....+++|.|.+++.+|+| .|+|.|.|..+...+..+.|.|.    .+|.+...+.. ..+..|+.+
T Consensus       152 ~g~~l~~-~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~-~~v~~G~~v  229 (524)
T 2ec8_A          152 QGKPLPK-DLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKAS-YLLREGEEF  229 (524)
T ss_dssp             SSCCCCS-SCEEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSE-EEEETTSCE
T ss_pred             CCcCcCC-CCceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCc-ceEEcCCcE
Confidence            8888864 33455556789999999999999 99999999877665667888887    66777655544 578899999


Q ss_pred             EEEEEEeeCCCCceeEEEEcCCccccccCC-ceEE---eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549         78 DIHCAVEADPPARSFKWKFNNSGETLDVGS-ERFS---SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus        78 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      .|.|.+.+.|.+..+.|++++....+.... ..+.   .......|.|.++..+|+|.|+|.|.|..|.....  +.+.|
T Consensus       230 ~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~--~~l~V  307 (524)
T 2ec8_A          230 TVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVT--TTLEV  307 (524)
T ss_dssp             EEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEE--EEEEE
T ss_pred             EEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEE--EEEEE
Confidence            999999998888569999988532111111 1111   11234589999999999999999999998887764  44455


Q ss_pred             CCCCCC---CC-cceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce---eEEEecC-----CCCcEEEcCCCCC
Q psy11549        154 AGKPQP---PQ-NCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL---LVNLTNL-----DTPAFTLEDLGLD  221 (261)
Q Consensus       154 ~~~p~~---p~-~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~i~~~~l~  221 (261)
                      ..+|..   |. ...+....|+.+.|.|.+  .+..++....|+++......   .+.....     ....|.|.++..+
T Consensus       308 ~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~--~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~  385 (524)
T 2ec8_A          308 VDKGFINIFPMINTTVFVNDGENVDLIVEY--EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGT  385 (524)
T ss_dssp             ESSCEEEEEESSCSEEEECTTCCEEEEEEE--EEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGG
T ss_pred             eccCceEeecCCCceEEEcCCCcEEEEEEE--eecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcc
Confidence            455531   11 123444679999999997  33333332444444332211   1111111     1257999999999


Q ss_pred             CccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        222 GTVLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       222 ~~~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      |.|.|  +|.|.|..|....+..+.+..
T Consensus       386 d~G~Y--~C~a~N~~g~~~~~~~l~V~~  411 (524)
T 2ec8_A          386 EGGTY--TFLVSNSDVNAAIAFNVYVNT  411 (524)
T ss_dssp             GCEEE--EEEEECSSCEEEEEEEEEECE
T ss_pred             cCeEE--EEEEEecCceEEEEEEEEEec
Confidence            99999  999999999877766666653

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=173.52  Aligned_cols=234  Identities=11%  Similarity=0.094  Sum_probs=151.3

Q ss_pred             CCCCeeccCCCCceEEEEC--CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe------------eceeecCce
Q psy11549          1 MAGGIPLAHNTSARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY------------APICKSDRI   66 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~--~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~------------~p~~~~~~~   66 (261)
                      +|||+++..+.+-.....+  .+|.|.+++.+|+|.|+|.+.|..|...  .+.|.|..            +|.+.....
T Consensus        37 ~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~--s~~l~v~~~~~~~~~~~~~~~p~~~~~~~  114 (312)
T 2y23_A           37 SKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS--SYLIDEEELKRLLALSHEHKFPTVPVKSE  114 (312)
T ss_dssp             EETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE--EEEECHHHHHHHHHHHHHHHSCBCCEEEE
T ss_pred             EECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE--EEEEEEeeeeeeecccccCCCCccccccC
Confidence            5889999754433333333  4999999999999999999999888653  45566643            444433332


Q ss_pred             eEEEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCcccccc-CCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         67 VIVGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETLDV-GSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        67 ~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~-~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ....+..|+.+.|.|.+. +.|.+ .+.|++++..  +.. ....+..  ......|.|.++..+|+|.|+|.+.+..+.
T Consensus       115 ~~~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~~~~--i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  191 (312)
T 2y23_A          115 LAVEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKE--IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKAT  191 (312)
T ss_dssp             EEEEECSSSCEEEEEEESCCCSSC-EEEEEETTEE--ECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCE
T ss_pred             CceEEeeCCCEEEEEEEEeCCCCC-EEEEEECCEE--CeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCce
Confidence            247788999999999999 66666 8999998742  222 1222222  244556999999999999999999875444


Q ss_pred             EEeeEEEEEEeC----------------CCCCCCC---cceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCcccee
Q psy11549        143 QVTPCLYQVVLA----------------GKPQPPQ---NCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLL  202 (261)
Q Consensus       143 ~~~~~~~~v~~~----------------~~p~~p~---~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~  202 (261)
                      ...  .+.+...                ....+|.   ........|+.+.|.|.+  .+..+. .+. |+++.......
T Consensus       192 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~--~~~p~~~~v~-W~~~g~~~~~~  266 (312)
T 2y23_A          192 NHS--TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV--ANIKKETHIV-WYKDEREISVD  266 (312)
T ss_dssp             EEE--EEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEE--ESCCSSCEEE-EEETTEEEEEE
T ss_pred             EEE--EEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEE--cCCCCCCEEE-EeeCCEECCCC
Confidence            333  2222100                0001121   112334579999999997  443344 444 44433222111


Q ss_pred             --EEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        203 --VNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       203 --~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                        .... .....|.|.++..+|.|.|  +|.|.|..|....+..+.+
T Consensus       267 ~~~~~~-~~~~~L~I~~v~~~d~G~Y--~C~a~N~~G~~~~~~~l~i  310 (312)
T 2y23_A          267 EKHDFK-DGICTLLITEFSKKDAGIY--EVILKDDRGKDKSRLKLVD  310 (312)
T ss_dssp             CCC-----CEEEEEECSCSGGGCEEE--EEEEESTTCCEEEEEEECS
T ss_pred             CcEEEE-CCEEEEEECcCCHHHCEEE--EEEEEcCCCceeeeeEEEe
Confidence              1111 2236899999999999999  9999999998877766654

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.94  E-value=7.5e-26  Score=174.61  Aligned_cols=221  Identities=14%  Similarity=0.155  Sum_probs=148.6

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEe-eCCCCceeEEEEc
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVE-ADPPARSFKWKFN   97 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~   97 (261)
                      +.+|.|.+++.+|+|.|+|.+.+..+...+..+.|.|...|........ ..+..++.+.+.|.+. +.|.+ .+.|+++
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~-~~~~~~~~~~~~C~~~~~~P~~-~i~W~~~  155 (313)
T 4fqp_A           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQK-VQLTGEPVPMARCVSTGGRPPA-QITWHSD  155 (313)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECC-BCCCSSCEEEEEEEEEEEBSCC-EEEEEET
T ss_pred             ceEEEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccc-eEeecCceEEEEEEccCccCCc-EEEeecC
Confidence            4579999999999999999987654444466778888777765543332 4456788889999876 55656 8999998


Q ss_pred             CCccccccCCceEEe--CC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC----CCCcceEEee
Q psy11549         98 NSGETLDVGSERFSS--GS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ----PPQNCSVRNE  168 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~--~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~----~p~~~~v~~~  168 (261)
                      +.....  . .....  .+   ..+.|.|.....+|.|.|+|.|.|..+.......+.+.+..+|.    ++....  ..
T Consensus       156 ~~~~~~--~-~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~--~~  230 (313)
T 4fqp_A          156 LGGMPN--T-SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNW--YL  230 (313)
T ss_dssp             TCCEEE--E-EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCE--ET
T ss_pred             Cccccc--c-ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCcccccccccee--ec
Confidence            753221  1 11111  11   12368889999999999999999987665554455566655553    111111  24


Q ss_pred             cCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        169 TTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       169 ~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      .|+.++|.|.+  . +.|.. -+.|++...........   ....|.|.++...|+|.|  +|.|.|.+|....+..+.|
T Consensus       231 ~g~~v~l~C~~--~-g~P~p~~v~W~~~~~~l~~~~~~---~~~~L~i~~v~~~d~G~Y--~C~a~N~~G~~~~~~~l~V  302 (313)
T 4fqp_A          231 GQNEATLTCDA--R-SNPEPTGYNWSTTMGPLPPFAVA---QGAQLLIRPVDKPINTTL--ICNVTNALGARQAELTVQV  302 (313)
T ss_dssp             TCCCEEEEEEE--E-EESCCCEEEEEETTBSCCTTEEE---ETTEEEECCCSSCCEEEE--EEEEECSSCEEEEEEEEEE
T ss_pred             CCCeEEEEEEe--c-CCCCCcEEEEEECCEECCCceEE---eCCEEEECcCChhhCEEE--EEEEEeCCCcEEEEEEEEE
Confidence            57889999997  3 34433 23445554333211111   236899999999999999  9999999999888888888


Q ss_pred             eeccccc
Q psy11549        248 SMSGAHY  254 (261)
Q Consensus       248 ~~~~~~~  254 (261)
                      ..++|+.
T Consensus       303 ~~~PP~~  309 (313)
T 4fqp_A          303 KEGPPHH  309 (313)
T ss_dssp             ECCC---
T ss_pred             EeCCCCC
Confidence            7766654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.94  E-value=1e-24  Score=183.86  Aligned_cols=220  Identities=19%  Similarity=0.276  Sum_probs=154.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~   80 (261)
                      +|||++|..+........+++|.|.+++.+|+|.|+|.|.|..+...+..+.|.|.++|...........+..|+.+.|.
T Consensus       145 ~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~  224 (642)
T 1e07_A          145 WVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLS  224 (642)
T ss_pred             EECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEE
Confidence            57899997544433334467999999999999999999999988765677889998665432211122457799999999


Q ss_pred             EEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCC
Q psy11549         81 CAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP  160 (261)
Q Consensus        81 C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p  160 (261)
                      |.+.+.|.+ .+.|++++..  +.          ....|.|.++..+|+|.|+|.+.|..|....+..+.+.+..+|.+|
T Consensus       225 C~~~g~p~~-~i~W~~~g~~--i~----------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p  291 (642)
T 1e07_A          225 CHAASNPPA-QYSWFVNGTF--QQ----------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP  291 (642)
T ss_pred             EEcCCCCCc-EEEEEECCeE--cc----------cCCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCC
Confidence            999888887 8999998742  21          1236999999999999999999998887665555666665544433


Q ss_pred             Ccc---eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--eEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        161 QNC---SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--LVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       161 ~~~---~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      ...   ......++.+.|.|.+  . +.|..+.|+ ++......  ..... .....|.|.++...|.|.|  +|.|.|.
T Consensus       292 ~i~~~~~~~~~~g~~v~l~C~~--~-~~p~~v~W~-~~g~~l~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y--~C~a~n~  364 (642)
T 1e07_A          292 FITSNNSNPVEDEDAVALTCEP--E-IQNTTYLWW-VNNQSLPVSPRLQLS-NDNRTLTLLSVTRNDVGPY--ECGIQNE  364 (642)
T ss_pred             EEEcCCceeEecCCcEEEEEEC--C-CCCccEEEE-ECCccCCCcCCEEEe-CCCCEEEEeccCcccCeeE--EEEEeCC
Confidence            210   1112347779999997  3 335445444 44322211  11222 2347899999999999999  9999999


Q ss_pred             CCcCC
Q psy11549        236 KGRSL  240 (261)
Q Consensus       236 ~G~~~  240 (261)
                      .|...
T Consensus       365 ~g~~~  369 (642)
T 1e07_A          365 LSVDH  369 (642)
T ss_pred             CCCcc
Confidence            98643

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.94  E-value=2.3e-25  Score=177.57  Aligned_cols=241  Identities=19%  Similarity=0.222  Sum_probs=162.4

Q ss_pred             CCCCeeccCC-CCceEEEECCeEEEccC-----CCCCCEeEEEEEEeC-CCcceeeeEEEEEEeeceeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHN-TSARIILSNQSLVLQKV-----SRQSAGTYKCSAINT-KGEATSNQLKLRVKYAPICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~-~~~~~~~~~~~L~i~~~-----~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~   73 (261)
                      +|||.++... ..+.....+++|.|.++     +.+|+|.|+|.+.+. .+...+..+.|.|..+|.+...... ..+..
T Consensus        57 ~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~-~~~~~  135 (403)
T 3laf_A           57 KKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTES-ITAFM  135 (403)
T ss_dssp             EETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCC-EEEET
T ss_pred             EECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCc-EEEEc
Confidence            4789998643 45566677889999988     678999999999865 4444466788888887777655544 77889


Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      |+.+.|.|.+.+.|.+ .+.|++++..........+..... ...|.|.++..+|+|.|+|.+.|..+..... .+.+.+
T Consensus       136 G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~-~~~l~v  212 (403)
T 3laf_A          136 GDTVLLKCEVIGDPMP-TIHWQKNQQDLNPIPGDSRVVVLP-SGALQISRLQPGDSGVYRCSARNPASTRTGN-EAEVRI  212 (403)
T ss_dssp             TSCEEECCCEECSSCC-EEEEEESSSBCCCCTTCCSEEECT-TSCEEECSCCGGGCEEEEEEEECSSCCCBCC-CEEEEE
T ss_pred             CCeEEEEEEEcccCCC-eEEEEECCEeccccCCceEEEEcC-CceEEEcccccccCEEEEEEEEcCCCceecc-ceeEEE
Confidence            9999999999988887 899999875322112222222222 2369999999999999999999987653321 233333


Q ss_pred             CCCCCCCCc-------ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcccee-EEEecCCCCcEEEcCCCCCCccE
Q psy11549        154 AGKPQPPQN-------CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL-VNLTNLDTPAFTLEDLGLDGTVL  225 (261)
Q Consensus       154 ~~~p~~p~~-------~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~~~  225 (261)
                      ...|..+..       ..+....|+.+.|.|.+  .+..+..+. |++........ ..........|.|.+++..|.|.
T Consensus       213 ~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~~p~~~~~-W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  289 (403)
T 3laf_A          213 LSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV--SGYPPPSFT-WLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGT  289 (403)
T ss_dssp             ECCCCCCEEEEEEECCCCEEEETTSCEEECCEE--EEESCCEEE-EEETTEECCCSSSSEEEETTTEEEECSCCGGGCEE
T ss_pred             ecCCCcccCceEecCCCceEecCCCcEEEEEEc--CCCCCCeEE-EEECCeeccCCCceEEECCccEEEEeCCCHHHCEE
Confidence            344432211       11223469999999997  333334444 44432221100 01111234679999999999999


Q ss_pred             EEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        226 MRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       226 Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      |  +|.|.|..|....+..+.+..+
T Consensus       290 Y--~C~a~n~~g~~~~~~~l~V~~~  312 (403)
T 3laf_A          290 Y--TCVVTYKNENISASAELTVLVP  312 (403)
T ss_dssp             E--EEEEEETTEEEEEEEEEEEEEE
T ss_pred             E--EEEEEcCCCceEEEEEEEEECC
Confidence            9  9999999998777766666543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.94  E-value=3.6e-25  Score=175.35  Aligned_cols=237  Identities=18%  Similarity=0.205  Sum_probs=161.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCC-CCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSR-QSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      +|||.+|......+....+++|.|.++.. +|+|.|+|.|.|..|...+..+.|.|...|.+.........+..|+.+.|
T Consensus        42 ~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l  121 (382)
T 1cs6_A           42 KMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMF  121 (382)
T ss_dssp             EETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEE
T ss_pred             EECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEE
Confidence            58999997654556667789999999997 99999999999998876566788888877765544333367889999999


Q ss_pred             EEEEe-eCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe-----eEEEEEEe
Q psy11549         80 HCAVE-ADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT-----PCLYQVVL  153 (261)
Q Consensus        80 ~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-----~~~~~v~~  153 (261)
                      .|.+. +.|.+ .+.|++++......... +.........|.|.++..+|+|.|+|.+.+..+....     ...+.+..
T Consensus       122 ~C~~~~~~p~~-~i~W~~~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~  199 (382)
T 1cs6_A          122 TCSPPPHYPAL-SYRWLLNEFPNFIPADG-RRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAA  199 (382)
T ss_dssp             CCCCCSEESCC-EEEEEESSTTCBCCCCS-SEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEES
T ss_pred             EeCCCCCCCCc-EEEEEECCCccccccCc-eEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccch
Confidence            99864 44555 89999987533222222 2233333347999999999999999999987642221     12233321


Q ss_pred             CC----CCC----CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccE
Q psy11549        154 AG----KPQ----PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVL  225 (261)
Q Consensus       154 ~~----~p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~  225 (261)
                      ..    +|.    .|.  ......|+.+.|.|.+  . +.|.....|++.......   ........|.|.+++..|.|.
T Consensus       200 ~~~~~~~P~~~~~~~~--~~~~~~G~~v~l~C~~--~-g~p~~~i~W~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~  271 (382)
T 1cs6_A          200 EDARQYAPSIKAKFPA--DTYALTGQMVTLECFA--F-GNPVPQIKWRKLDGSQTS---KWLSSEPLLHIQNVDFEDEGT  271 (382)
T ss_dssp             CCCCCEEEEEEECCCS--EEEEETTCCEEEECEE--E-EESCCEEEEEECCSCCSC---CCSBSSSEEEECSCCGGGCEE
T ss_pred             hhcccCCCceeccCCC--ceEEeCCCeEEEEEEE--c-cCCCCEEEEEECCccccc---EEecCCcEEEEccCChhhCEE
Confidence            11    121    122  2334569999999997  3 334333444444333211   112345789999999999999


Q ss_pred             EEEEEEEEcCCCcCCceeeeeeee
Q psy11549        226 MRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       226 Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      |  +|.|.|..|....+..+.+..
T Consensus       272 Y--~C~a~n~~g~~~~~~~l~V~~  293 (382)
T 1cs6_A          272 Y--ECEAENIKGRDTYQGRIIIHA  293 (382)
T ss_dssp             E--EEEEEETTEEEEEEEEEEEEE
T ss_pred             E--EEEEEcCCCeEEEEEEEEEec
Confidence            9  999999999876666665543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.94  E-value=1.7e-25  Score=177.23  Aligned_cols=228  Identities=18%  Similarity=0.223  Sum_probs=153.3

Q ss_pred             CCCCeeccC-CCCceEE-EECCeEEEccCCCCCCEeEEEEEEeCCCcc----eeeeEEEEEE------eeceeecCceeE
Q psy11549          1 MAGGIPLAH-NTSARII-LSNQSLVLQKVSRQSAGTYKCSAINTKGEA----TSNQLKLRVK------YAPICKSDRIVI   68 (261)
Q Consensus         1 ~~ng~~l~~-~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~----~s~~~~l~V~------~~p~~~~~~~~~   68 (261)
                      +|||.++.. .+.+... ..+++|.|.+++.+|+|.|+|.+.|..+..    .+..+.|.|.      .+|.+.......
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~  216 (382)
T 1cs6_A          137 LLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPAD  216 (382)
T ss_dssp             EESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSE
T ss_pred             EECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCc
Confidence            366766532 2233333 234799999999999999999999887532    1233455543      355554332223


Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +.  . .  .......|.|.++..+|+|.|+|.+.|..|.......
T Consensus       217 ~~~~~G~~v~l~C~~~g~p~~-~i~W~~~~~~--~~--~-~--~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  288 (382)
T 1cs6_A          217 TYALTGQMVTLECFAFGNPVP-QIKWRKLDGS--QT--S-K--WLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR  288 (382)
T ss_dssp             EEEETTCCEEEECEEEEESCC-EEEEEECCSC--CS--C-C--CSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCeEEEEEEEccCCCC-EEEEEECCcc--cc--c-E--EecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEE
Confidence            678899999999999998887 8999997743  11  1 1  1223447999999999999999999999888666444


Q ss_pred             EEEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--eEEEecCCCCcEEEcCCCCCCc
Q psy11549        149 YQVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--LVNLTNLDTPAFTLEDLGLDGT  223 (261)
Q Consensus       149 ~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~l~~~  223 (261)
                      +.+  ..+|.   .+....+  ..|+.+.|.|.+  .+..++.+ .|+++......  ....   ....|.|.++..+|.
T Consensus       289 l~V--~~~p~~~~~~~~~~~--~~g~~~~l~C~~--~g~p~p~v-~W~~~g~~~~~~~~~~~---~~~~L~i~~v~~~d~  358 (382)
T 1cs6_A          289 III--HAQPDWLDVITDTEA--DIGSDLRWSCVA--SGKPRPAV-RWLRDGQPLASQNRIEV---SGGELRFSKLVLEDS  358 (382)
T ss_dssp             EEE--EEEEEEEECCCCEEE--ETTCCEEEECEE--EEESCCEE-EEEETTEECCCCSSEEE---ETTEEEESSCCGGGC
T ss_pred             EEE--ecCCCcccCCCccEE--cCCCeEEEEEEe--eeecCCEE-EEEECCEECCCCceEEE---ECCEEEECcCCcccC
Confidence            444  34443   3333333  569999999997  33333444 44444322211  1111   236899999999999


Q ss_pred             cEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        224 VLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       224 ~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      |.|  +|.|.|..|....+..+.|.
T Consensus       359 G~Y--~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          359 GMY--QCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             EEE--EEEEEETTEEEEEEEEEEEE
T ss_pred             EEE--EEEEEeCCCeEEEEEEEEEe
Confidence            999  99999999988777766653

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.94  E-value=1.9e-26  Score=177.58  Aligned_cols=222  Identities=14%  Similarity=0.130  Sum_probs=146.3

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceee--cCceeEEEeeCCCcEEEEEEE-eeCCCCceeEEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICK--SDRIVIVGASRSESVDIHCAV-EADPPARSFKWK   95 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~--~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~   95 (261)
                      +.+|.|.+++.+|+|.|+|.|.|..+...+..+.+.+...|...  ..... .....|+.+.|.|.+ .+.|.+ .+.|+
T Consensus        73 ~~sL~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~~~~~l~C~~~~g~P~~-~i~W~  150 (308)
T 4fom_A           73 DATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDS-LIDGGNETVAAICIAATGKPVA-HIDWE  150 (308)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSC-CCTTCSCEEEEEEEEEEEBSCC-EEEEC
T ss_pred             ceEEEEccCCHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccce-eEEcCCceEEEEEEecCCcCCc-eEEEE
Confidence            35899999999999999999998755444666777777655432  11221 345568899999976 466666 89999


Q ss_pred             EcCCccccccCCceEEe----CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC---CCCcceEEee
Q psy11549         96 FNNSGETLDVGSERFSS----GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNE  168 (261)
Q Consensus        96 ~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~---~p~~~~v~~~  168 (261)
                      +++....    ......    ....+.|.|..+..+|.|.|+|.|.|..+.......+.+.+..+|.   .+.... ...
T Consensus       151 ~~~~~~~----~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~-~~~  225 (308)
T 4fom_A          151 GDLGEME----STTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGN-WFV  225 (308)
T ss_dssp             CCSSBCC----EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSC-EET
T ss_pred             ECCcccc----cccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEccccee-eee
Confidence            8774311    111111    1113468999999999999999999987765554456666655553   111111 224


Q ss_pred             cCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        169 TTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       169 ~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .++.+.|.|.+  .+..++..+.|++........  ........+.|.+++.+|+|.|  +|.|.|.+|....+..+.|.
T Consensus       226 ~g~~v~l~C~~--~g~P~p~~v~W~k~~~~~~~~--~~~~~~~~l~i~~v~~~d~G~Y--~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          226 GRKGVNLKCNA--DANPPPFKSVWSRLDGQWPDG--LLASDNTLHFVHPLTFNYSGVY--ICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             TCCSCEEECCE--EEESCEEEEECCBSSSCCCSS--CBCSTTEEECCSCCCSCCCSEE--EEEEEETTEEEEEEEECCEE
T ss_pred             ccccEEEEEEE--ecCCCCcEEEEEECCeECCCc--EEEcCCeEEEECCCChhhCEEE--EEEEEeCCCcEEEEEEEEEE
Confidence            58899999997  433334334455544332211  1122334566788889999999  99999999998888888877


Q ss_pred             ecccc
Q psy11549        249 MSGAH  253 (261)
Q Consensus       249 ~~~~~  253 (261)
                      .++.+
T Consensus       300 ~~P~~  304 (308)
T 4fom_A          300 DPPHH  304 (308)
T ss_dssp             CCC--
T ss_pred             cCCCC
Confidence            65443

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.93  E-value=2.6e-25  Score=169.74  Aligned_cols=227  Identities=12%  Similarity=0.117  Sum_probs=148.2

Q ss_pred             CCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEE
Q psy11549          2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHC   81 (261)
Q Consensus         2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C   81 (261)
                      |||.++     ......+++|.|.+++.+|+|.|+|.+.|  |.  +..+.|.|..+|........ ..+..|+.+.|.|
T Consensus        44 ~~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~--~~~~~l~V~~~~~~~~~~~~-~~~~~g~~v~l~C  113 (290)
T 2o26_X           44 FKTYFN-----EMVENKKNEWIQEKAEATRTGTYTCSNSN--GL--TSSIYVFVRDPAKLFLVGLP-LFGKEDSDALVRC  113 (290)
T ss_dssp             EECSSS-----CEEEECSSEEEETTCCGGGCEEEEEEESS--SC--EEEEEEEEECSSCCBCCCCC-EEEETTSCEEECC
T ss_pred             cCCcce-----eeecCCCceEEEeccCHHhCeEEEEEeeC--Cc--cEEEEEEEeCCCcccccccc-eEEecCCeEEEeC
Confidence            555555     12233457999999999999999999998  43  56788999887776643333 6778999999999


Q ss_pred             EEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCe-EEEEEEEcCCceEEe-eEEEEEE--eCCCC
Q psy11549         82 AVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG-TLSCAAQNAIGTQVT-PCLYQVV--LAGKP  157 (261)
Q Consensus        82 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~-~~~~~v~--~~~~p  157 (261)
                      .+.+ |....+.|++.+. ..+. ...++..... ..|.|.++..+|+| .|+|.|.|..+.... ...+.+.  ...+|
T Consensus       114 ~~~~-p~~~~v~W~~~~g-~~l~-~~~~~~~~~~-~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P  189 (290)
T 2o26_X          114 PLTD-PQVSQYSLIECDG-KSLP-TDLTFVPNPK-AGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIP  189 (290)
T ss_dssp             CBSC-CSCEEEEEEETTS-CCCC-TTCEEEEETT-TEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCC
T ss_pred             cCCC-CCCceEEEEeCCC-cCCC-CCCceeeCCC-CCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCC
Confidence            9985 5523899965332 2232 2233333322 36999999999999 999999998554332 2334333  11333


Q ss_pred             C---CCCcceEEeecCCeEEEEeecCCCCCCCeEE-EEEEEeCCcc----cee--EEE----ecCCCCcEEEcCCCCCCc
Q psy11549        158 Q---PPQNCSVRNETTSSVHISCTPGYDGGLPQTF-TLELYSASDL----NLL--VNL----TNLDTPAFTLEDLGLDGT  223 (261)
Q Consensus       158 ~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~-~~~~~~~~~~----~~~--~~~----~~~~~~~~~i~~~~l~~~  223 (261)
                      .   .|...  ....|+.+.|.|.+  . +.|... ..|++.....    ...  ...    .......|.|.+++.+|+
T Consensus       190 ~i~~~~~~~--~v~~G~~v~l~C~~--~-g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~  264 (290)
T 2o26_X          190 VVSVPETSH--LLKKGDTFTVVCTI--K-DVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDS  264 (290)
T ss_dssp             EEECSCSBC--CCCTTCCEEEEEEE--E-ESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSC
T ss_pred             ccccCCCcc--eEecCCcEEEEEEE--e-cCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccC
Confidence            2   22222  23569999999998  3 334332 3444444331    100  000    112236899999999999


Q ss_pred             cEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        224 VLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       224 ~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      |.|  +|.|.|..|....+..+.+..
T Consensus       265 G~Y--~C~a~N~~g~~~~~~~l~V~~  288 (290)
T 2o26_X          265 GVF--MCYANNTFGSANVTTTLKVVE  288 (290)
T ss_dssp             EEE--EEEEECSSCEEEEEEEECC--
T ss_pred             eEE--EEEEeCCCCcEEEEEEEEEEe
Confidence            999  999999999887666666643

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.93  E-value=1.7e-25  Score=172.71  Aligned_cols=237  Identities=15%  Similarity=0.170  Sum_probs=152.3

Q ss_pred             CCCCeecc--CCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE-eeceeecCc--eeEEEeeCCC
Q psy11549          1 MAGGIPLA--HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK-YAPICKSDR--IVIVGASRSE   75 (261)
Q Consensus         1 ~~ng~~l~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~-~~p~~~~~~--~~~~~~~~g~   75 (261)
                      +|||.++.  .....+....+++|.|.+++.+|+|.|+|.+.|..+.. ...+.+.|. .+|.+....  .....+..|+
T Consensus        41 ~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~  119 (315)
T 1itb_B           41 YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-RIKISAKFVENEPNLCYNAQAIFKQKLPVAG  119 (315)
T ss_dssp             ECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCC-CEECCCEEECCCTTSSSCGGGEEEEEEETTS
T ss_pred             EeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEE-EEEEEEEEeCCCCCcccccccccceEEecCC
Confidence            46776543  22334555567799999999999999999999988765 344445543 333332111  1225678999


Q ss_pred             cEEEEEEE------eeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE-cCCceEEe-eE
Q psy11549         76 SVDIHCAV------EADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ-NAIGTQVT-PC  147 (261)
Q Consensus        76 ~~~l~C~~------~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~~-~~  147 (261)
                      .+.|.|.+      .+.|.+ .+.|++++..  +.....++.....  .|.|.++..+|+|.|+|.+. +..|.... ..
T Consensus       120 ~v~l~C~~~~~~~~~g~p~~-~i~W~k~~~~--l~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~  194 (315)
T 1itb_B          120 DGGLVCPYMEFFKNENNELP-KLQWYKDCKP--LLLDNIHFSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITR  194 (315)
T ss_dssp             CEEEECSSCTTTCTTTTCCC-CCEEEETTEE--CCCCSSSEEEETT--EEEESSCCGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred             CeEEEEecccccccCCCCCC-EEEEEECCEE--CCCccceEeecCc--eEEEEeceehhCcEEEEEEEcCCCCcEEEEEE
Confidence            99999998      677767 8999998743  2222333333333  79999999999999999999 67776532 22


Q ss_pred             EEEEEeC--CCCCCCC-----cceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-------eeEEEecC-----
Q psy11549        148 LYQVVLA--GKPQPPQ-----NCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-------LLVNLTNL-----  208 (261)
Q Consensus       148 ~~~v~~~--~~p~~p~-----~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-------~~~~~~~~-----  208 (261)
                      .+.+.+.  ..+.+|.     ...+....|+.+.|.|.+  .+..+..+ .|+++.....       ........     
T Consensus       195 ~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~--~g~P~p~i-~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~  271 (315)
T 1itb_B          195 VIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNV--TGQLSDIA-YWKWNGSVIDEDDPVLGEDYYSVENPANKR  271 (315)
T ss_dssp             EEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEE--EECTTSEE-EEEETTEECCTTCSSEEEEEEEECCSSCGG
T ss_pred             EEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEE--ecCCCCee-EEEECCEECCcccccccccceeeeccCCCc
Confidence            3333222  1122332     112445679999999997  33333334 4544322110       01111111     


Q ss_pred             ---CCCcEEEcCCCCCC-ccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        209 ---DTPAFTLEDLGLDG-TVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       209 ---~~~~~~i~~~~l~~-~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                         ....|.|.+++.+| +|.|  +|.|.|..|....+..+.+.
T Consensus       272 ~~~~~~~L~i~~v~~~d~~G~Y--~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          272 RSTLITVLNISEIESRFYKHPF--TCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             GEEEEEEEEESSCCGGGGTSCE--EEEEECTTCCEEEEEEEECC
T ss_pred             eeEEEEEEEEeecCHHHcCCce--EEEEecCCCceeEEEEEEec
Confidence               11379999999999 9999  99999999998887777664

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.93  E-value=2.7e-25  Score=176.40  Aligned_cols=227  Identities=13%  Similarity=0.180  Sum_probs=152.2

Q ss_pred             CCCeeccC----CCCceEEEECCeEEEccCCCCCC-EeEEEEEEeCCCccee---eeEEEEEEee-----ceeecCceeE
Q psy11549          2 AGGIPLAH----NTSARIILSNQSLVLQKVSRQSA-GTYKCSAINTKGEATS---NQLKLRVKYA-----PICKSDRIVI   68 (261)
Q Consensus         2 ~ng~~l~~----~~~~~~~~~~~~L~i~~~~~~D~-G~Y~C~~~~~~~~~~s---~~~~l~V~~~-----p~~~~~~~~~   68 (261)
                      |||.++..    ...+.....+++|.|.+++.+|+ |.|+|.+.|..+....   ....|.|..+     |.........
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~  221 (388)
T 2v5m_A          142 TDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP  221 (388)
T ss_dssp             ETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCC
T ss_pred             eCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCc
Confidence            56665532    13455666778999999999999 9999999998644311   1235666543     3222111122


Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+..|+.+.|.|.+.+.|.+ .+.|++++.+....   ....++...  ...|.|.++..+|+|.|+|.|.|..|....
T Consensus       222 ~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  298 (388)
T 2v5m_A          222 LELMVAHTISLLCPAQGFPAP-SFRWYKFIEGTTRKQAVVLNDRVKQV--SGTLIIKDAVVEDSGKYLCVVNNSVGGESV  298 (388)
T ss_dssp             EEEETTSCEEECCCCEEESCC-EEEEEEECTTSSCEEECCCSSSEEEE--TTEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred             eEEeeCCcEEEEEECCCCCCC-EEEEEecCCCCcccccccccCceecc--cCEEEECcCCHHHCeEEEEEEecCCCceeE
Confidence            457789999999999998888 89999975432110   111122222  237999999999999999999999988766


Q ss_pred             eEEEEEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCC
Q psy11549        146 PCLYQVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDG  222 (261)
Q Consensus       146 ~~~~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~  222 (261)
                      ...+.|.  .+|.   .|..  .....|+.+.|.|.+  .+..+..+. |+++....       ......|.|.++...|
T Consensus       299 ~~~l~V~--~~p~~~~~~~~--~~v~~g~~~~l~C~~--~g~p~p~i~-W~~~g~~i-------~~~~~~L~i~~v~~~d  364 (388)
T 2v5m_A          299 ETVLTVT--APLSAKIDPPT--QTVDFGRPAVFTCQY--TGNPIKTVS-WMKDGKAI-------GHSESVLRIESVKKED  364 (388)
T ss_dssp             EEEEEEE--EEEEEEEESSE--EEECTTSCEEEEEEE--EEECCCEEE-EEETTEEC-------SCCSSEEEESSCCGGG
T ss_pred             EEEEEEe--CCCccccCCCc--EEecCCCCEEEEEEe--ccccCCeEE-EEECCEEC-------ccCCCEEEEecCChhh
Confidence            4444443  3332   2222  333569999999997  333334444 44433221       2235789999999999


Q ss_pred             ccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        223 TVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       223 ~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      .|.|  +|.|.|..|....+..+.+
T Consensus       365 ~G~Y--~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          365 KGMY--QCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             CEEE--EEEEECSSCEEEEEEEEEE
T ss_pred             CEEE--EEEEEcCCCcEEEEEEEEe
Confidence            9999  9999999998877766654

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.93  E-value=3.6e-25  Score=170.98  Aligned_cols=238  Identities=15%  Similarity=0.081  Sum_probs=139.7

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCC----cceeeeEEEEEEee---ceeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKG----EATSNQLKLRVKYA---PICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~----~~~s~~~~l~V~~~---p~~~~~~~~~~~~~~   73 (261)
                      +|||.++...  ......+++|.|.+++.+|+|.|+|.|.+..+    ...+..+.|.|...   |.+...+..  .+..
T Consensus        57 ~k~g~~~~~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~--~v~~  132 (316)
T 3vh8_G           57 YKEDRIHIPI--FHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP--LVKS  132 (316)
T ss_dssp             EESSCSSSCH--HHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCS--EEET
T ss_pred             EeCCCcccee--ecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCC--ccCC
Confidence            4677776421  12223467899999999999999999986432    12355677887643   333322222  2679


Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE---EeeEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ---VTPCLYQ  150 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~---~~~~~~~  150 (261)
                      |++++|.|.+.+ +++ .+.|++++....................|.|.++..+|+|.|+|.|.|..+..   ..+..+.
T Consensus       133 G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~  210 (316)
T 3vh8_G          133 GERVILQCWSDI-MFE-HFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLD  210 (316)
T ss_dssp             TCCEEEEEEESS-CCS-EEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEE
T ss_pred             CCeEEEEEcCCC-CCc-EEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEE
Confidence            999999999954 334 79999987532211111111122345579999999999999999999987631   1122344


Q ss_pred             EEeCCCCCCCCcceE---EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEE--EecC--CCCcEEEcCCCCCCc
Q psy11549        151 VVLAGKPQPPQNCSV---RNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVN--LTNL--DTPAFTLEDLGLDGT  223 (261)
Q Consensus       151 v~~~~~p~~p~~~~v---~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~i~~~~l~~~  223 (261)
                      +.+...+.+|.....   ....|+.++|.|.+.   ..+..|.| ++..........  ....  ....|.|.+++  |+
T Consensus       211 l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~---~~~~~~~W-~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~  284 (316)
T 3vh8_G          211 IVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSR---SSYDMYHL-SREGGAHERRLPAVRKVNRTFQADFPLGPAT--HG  284 (316)
T ss_dssp             EEEECSSCCCEEEEESCSCCCTTSCCEEEEEES---SCCSEEEE-EETTSSCCEEEECEECTTSCEEEEEECC-------
T ss_pred             EEecCCCCCCeEEeCCCCeecCCCcEEEEEECC---CCCcEEEE-EECCCcCCCceeceeccCCceeEEEEcCCcC--CC
Confidence            555444333321110   124699999999972   33344444 444433322111  1111  12578999966  99


Q ss_pred             cEEEEEEEEEcCCC---cCCceeeeeeeeccc
Q psy11549        224 VLMRVVISGVNAKG---RSLPVIWDDFSMSGA  252 (261)
Q Consensus       224 ~~Y~~~~~a~N~~G---~~~~s~~~~~~~~~~  252 (261)
                      |.|  +|.|.|..+   .+..|..+++...++
T Consensus       285 G~Y--~C~a~n~~~~~~~s~~S~~~~l~V~g~  314 (316)
T 3vh8_G          285 GTY--RCFGSFRHSPYEWSDPSDPLLVSVTGN  314 (316)
T ss_dssp             CEE--EEEEEBTTBTTEECCCCCCEEC-----
T ss_pred             EEE--EEEeecCCCchhccCCCCcEEEEEeCC
Confidence            999  999999877   467788877766543

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.93  E-value=9.3e-25  Score=166.49  Aligned_cols=225  Identities=14%  Similarity=0.142  Sum_probs=144.7

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcC
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNN   98 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~   98 (261)
                      +.+|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..+|...........+..|+.+.|.|.+.+.+.+..+.|++.+
T Consensus        50 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~  128 (289)
T 3ejj_X           50 GSTLTTRNATFKNTGTYRCTELEDPMAG-STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREG  128 (289)
T ss_dssp             CCEEEESSCCGGGCEEEEEECCC------CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGG
T ss_pred             ccEEEEeeeccccCEEEEEEEeccCCcc-eeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecC
Confidence            4689999999999999999999887775 677889998776532222233778899999999999987766459998754


Q ss_pred             CccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE-cCCceEEeeEEEEEEeCCCC-CCCCcc----eEEeecCCe
Q psy11549         99 SGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ-NAIGTQVTPCLYQVVLAGKP-QPPQNC----SVRNETTSS  172 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~-~~~~~~~~~~~~~v~~~~~p-~~p~~~----~v~~~~~~~  172 (261)
                      . ..+ ....++..... ..|.|.++..+|+|.|+|.+. +..+....  .+.+.+...+ .+|...    ......|..
T Consensus       129 ~-~~~-~~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~--~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~  203 (289)
T 3ejj_X          129 G-RQV-LRKTVYFFSPW-RGFIIRKAKVLDSNTYVCKTMVNGRESTST--GIWLKVNRVHPEPPQIKLEPSKLVRIRGEA  203 (289)
T ss_dssp             G-EEC-CTTCCEEEETT-TEEEESSCCGGGCEEEEEEEEETTEEEECC--CEEEEEESSCCCCCEEEEESSSEECCSSSC
T ss_pred             C-eec-CCCccEEECCC-CCEEEeecccccCEEEEEEEEeCCCccccc--cEEEEEEECCCCCCeEEecCCceEEEeCCc
Confidence            2 222 22333333222 259999999999999999999 43343334  3444443322 222211    112246999


Q ss_pred             EEEEeecCCCCCCCeEEEEEEEeCCccceeEEE--e---cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        173 VHISCTPGYDGGLPQTFTLELYSASDLNLLVNL--T---NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       173 ~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      +.|.|.+  .+..|.....|++...........  .   ......|.|.+++.+|.|.|  +|.|.|.+|....+..+.+
T Consensus       204 ~~l~C~~--~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y--~C~a~N~~G~~~~s~~L~~  279 (289)
T 3ejj_X          204 AQIVCSA--TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY--SCVASNDVGTRTATMNFQV  279 (289)
T ss_dssp             EEEEEEE--EESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEE--EEEEECSSCEEEEEEEEEC
T ss_pred             EEEEEEe--CCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEE--EEEEEcCCCCccccEEEEE
Confidence            9999997  343454434444543322111100  0   01135799999999999999  9999999999999888887


Q ss_pred             eecccc
Q psy11549        248 SMSGAH  253 (261)
Q Consensus       248 ~~~~~~  253 (261)
                      ..+.+.
T Consensus       280 ~~~~~~  285 (289)
T 3ejj_X          280 VESHHH  285 (289)
T ss_dssp             C-----
T ss_pred             Eecccc
Confidence            655443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.93  E-value=2.2e-25  Score=177.79  Aligned_cols=233  Identities=17%  Similarity=0.221  Sum_probs=156.2

Q ss_pred             CCCeeccCCCCceEEEECCeEEEccCCCCC-CEeEEEEEEeCCCcce--eeeEEEEEEee-------ceeecCc--eeEE
Q psy11549          2 AGGIPLAHNTSARIILSNQSLVLQKVSRQS-AGTYKCSAINTKGEAT--SNQLKLRVKYA-------PICKSDR--IVIV   69 (261)
Q Consensus         2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D-~G~Y~C~~~~~~~~~~--s~~~~l~V~~~-------p~~~~~~--~~~~   69 (261)
                      ||+..+.....+.....+++|.|.+++.+| +|.|+|.+.|..+...  +..+.|.|...       |.+..+.  ....
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~  232 (404)
T 3p3y_A          153 SSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ  232 (404)
T ss_dssp             CTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEE
T ss_pred             CCCccccCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCc
Confidence            555444434455666677899999999999 5999999999877642  23355666532       2222221  1235


Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+..|+.+.|.|.+.+.|.+ .+.|++++..  +......+  ......|.|.++..+|+|.|+|.|.|..|....... 
T Consensus       233 ~~~~G~~v~l~C~~~g~p~~-~v~W~~~~~~--~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~-  306 (404)
T 3p3y_A          233 MVLRGMDLLLECIASGVPTP-DIAWYKKGGD--LPSDKAKF--ENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS-  306 (404)
T ss_dssp             EEETTSCEEEECCBCCSSCC-EEEEEETTBC--CCTTTEEE--EGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEE-
T ss_pred             eEecCCCEEEEEEECCCCCC-cEEEEECCEE--CCCCcccc--cccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEE-
Confidence            68899999999999998888 8999998743  22222222  222347999999999999999999999888666444 


Q ss_pred             EEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcccee--EEEecCCCCcEEEcCCCCCCcc
Q psy11549        150 QVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL--VNLTNLDTPAFTLEDLGLDGTV  224 (261)
Q Consensus       150 ~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~l~~~~  224 (261)
                       +.+..+|.   .|....+  ..|+.+.|.|.+  .+..+..+.| +++.......  ..........|.|.++..+|+|
T Consensus       307 -l~V~~~p~~~~~~~~~~v--~~g~~~~l~C~~--~g~p~p~v~W-~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  380 (404)
T 3p3y_A          307 -VRVKAAPYWLDEPKNLIL--APGEDGRLVCRA--NGNPKPTVQW-MVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRA  380 (404)
T ss_dssp             -EEEEEEEEEEECCCCEEE--CTTCCEEEECEE--EEESCCEEEE-EETTEEGGGSCCCTTEEEETTEEEESSCCSSCCC
T ss_pred             -EEEeCCCeeeccCCccee--ecCCcEEEEEEc--cccCCCceEE-EECCEecCCCCCCceEEecCCEEEEeecCHHHCE
Confidence             44444442   3333333  469999999997  3333344444 4443222100  0000112358999999999999


Q ss_pred             EEEEEEEEEcCCCcCCceeeeeee
Q psy11549        225 LMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       225 ~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .|  +|.|.|..|....+..+.+.
T Consensus       381 ~Y--~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          381 VY--QCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             EE--EEEEEETTEEEEEEEEEEEC
T ss_pred             EE--EEEEEeCCCcEEEEEEEEEE
Confidence            99  99999999988877777653

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.93  E-value=8.4e-24  Score=158.89  Aligned_cols=214  Identities=13%  Similarity=0.119  Sum_probs=141.5

Q ss_pred             CCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEE
Q psy11549          2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHC   81 (261)
Q Consensus         2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C   81 (261)
                      |||.++..        .+.+|.|.+++.+|+|.|+|.+.|..+.   ..+.|.|..++....+..  ..+.+|+.+.|.|
T Consensus        38 ~~g~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~s---~~~~l~v~~~~~~~~~~~--~~~~~g~~v~l~C  104 (262)
T 3rjd_A           38 LNGTATQT--------STPSYRITSASVNDSGEYRCQRGLSGRS---DPIQLEIHRGWLLLQVSS--RVFTEGEPLALRC  104 (262)
T ss_dssp             ETTEECSC--------CSSEEEESSCCGGGCEEEEEEESSSCCC---CCEEEEEECSSEEEEESC--SEEETTSCEEEEE
T ss_pred             ECCEEeec--------cCCeEEEecCCcccCeEEEEEEecCCcc---ccEEEEEeccceEecCCC--eEEecCCeEEEEE
Confidence            56666642        2568999999999999999999876543   357788876654433322  3467899999999


Q ss_pred             EEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCC
Q psy11549         82 AVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus        82 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~  161 (261)
                      .+....++..+.|++++..  +.       .......|.|.++..+|.|.|+|.+.+..+.......+.+.  .++.+|.
T Consensus       105 ~~~~~~p~~~v~W~~~g~~--~~-------~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~--~~~~~p~  173 (262)
T 3rjd_A          105 HAWKDKLVYNVLYYRNGKA--FK-------FFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK--ELFPAPV  173 (262)
T ss_dssp             EEGGGCCCEEEEEEETTEE--EE-------EEEECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEE--CSSCCCE
T ss_pred             EccCCCCCceEEEEECCcc--cc-------ccCCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEec--cCCCCCe
Confidence            9944444348999997642  11       11113469999999999999999999988666654444444  3222221


Q ss_pred             -----cceEEeecCCeEEEEeecCCCCCC--C-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        162 -----NCSVRNETTSSVHISCTPGYDGGL--P-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       162 -----~~~v~~~~~~~~~l~c~~~~~~~~--p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                           ...+  ..|+.+.|.|.+  .+..  | ..+.+.|...+...   . .......|.|.+++.+|.|.|  +|.|.
T Consensus       174 ~~~~~~~~~--~~g~~~~l~C~~--~~~p~~p~~~~~~~w~~~~~~~---~-~~~~~~~L~i~~v~~~d~G~Y--~C~a~  243 (262)
T 3rjd_A          174 LNASVTSPL--LEGNLVTLSCET--KLLLQRPGLQLYFSFYMGSKTL---R-GRNTSSEYQILTARREDSGLY--WCEAA  243 (262)
T ss_dssp             EEESSCSSE--ETTCCEEEEEEC--CCCCC-----EEEEEEETTEEE---E-EEESCCEEEESSCCGGGCEEE--EEEEE
T ss_pred             EeecCceee--cCCCeEEEEeEc--ccCCCCCCccEEEEEEeCCcEe---c-ccCCCceEEEEEechhhCeEE--EEEEE
Confidence                 2223  459999999997  3332  2 22333233322221   1 112447899999999999999  99999


Q ss_pred             cCCCcC-Cceeeeeeee
Q psy11549        234 NAKGRS-LPVIWDDFSM  249 (261)
Q Consensus       234 N~~G~~-~~s~~~~~~~  249 (261)
                      |..|.. ..|..+.+..
T Consensus       244 n~~G~~~~~s~~~~l~V  260 (262)
T 3rjd_A          244 TEDGNVLKRSPELELQV  260 (262)
T ss_dssp             ETTSSCEEECCCEEECE
T ss_pred             cccCceEEecCCeEEEE
Confidence            999964 5555555543

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.93  E-value=2.7e-25  Score=169.73  Aligned_cols=223  Identities=13%  Similarity=0.124  Sum_probs=142.0

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      ++|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..+|...........+.+|+.+.|.|.+.+......+.|++++.
T Consensus        51 ~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~  129 (292)
T 4dkd_C           51 SILSTNNATFQNTGTYRCTEPGDPLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRG  129 (292)
T ss_dssp             EEEEESSCCGGGCSCEEECCCC----C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGG
T ss_pred             EEEEEcccccccCEEEEEEEccCCCCc-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCC
Confidence            489999999999999999999987776 6778899987775422222236788999999999999833213799998742


Q ss_pred             ccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCC-CCCC------cceEEeecCCe
Q psy11549        100 GETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP-QPPQ------NCSVRNETTSS  172 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p-~~p~------~~~v~~~~~~~  172 (261)
                       ..+ ....++..... ..|.|.++..+|+|.|+|.+.+..+..... .+.+.+...+ .+|.      ...+  ..|+.
T Consensus       130 -~~~-~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~-~~~l~V~~~~~~~p~i~~~~~~~~~--~~g~~  203 (292)
T 4dkd_C          130 -RPL-MRHTNYSFSPW-HGFTIHRAKFIQSQDYQCSALMGGRKVMSI-SIRLKVQKVIPGPPALTLVPAELVR--IRGEA  203 (292)
T ss_dssp             -CCC-CSSCCEECCSS-SCCEETTCCGGGCSEEEEEECSTTSCEECC-CEEEEEECCCCSSCEEEEESSCBCC--CSSSC
T ss_pred             -Ccc-ccCCcccccCC-ceEEECCCCHHHCeEEEEEEEeCCCceeEE-EEEEEEeCCCCCCCeEEccCCceeE--ecCCC
Confidence             222 22223333322 249999999999999999999876654331 3344443322 1221      1111  36999


Q ss_pred             EEEEeecCCCCCCCeEEEEEEEeCCc-cce--eEEEecC---CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeee
Q psy11549        173 VHISCTPGYDGGLPQTFTLELYSASD-LNL--LVNLTNL---DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       173 ~~l~c~~~~~~~~p~~~~~~~~~~~~-~~~--~~~~~~~---~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~  246 (261)
                      +.|.|.+  . +.|..+.|+|...+. ...  .......   ....|.|.+++.+|.|.|  +|.|.|..|....+..+.
T Consensus       204 v~l~C~~--~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y--~C~a~N~~g~~~~~~~l~  278 (292)
T 4dkd_C          204 AQIVCSA--S-SVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY--SCVASNVQGKHSTSMFFR  278 (292)
T ss_dssp             EEEEEEE--E-ESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEE--EEEEECSSCEEEEEEEEC
T ss_pred             EEEEEEe--c-CCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEE--EEEEecCCCCceeEEEEE
Confidence            9999997  3 444444444433322 110  1111110   124799999999999999  999999999988888887


Q ss_pred             eeeccccc
Q psy11549        247 FSMSGAHY  254 (261)
Q Consensus       247 ~~~~~~~~  254 (261)
                      |.......
T Consensus       279 V~~~~~~~  286 (292)
T 4dkd_C          279 VVESAGNS  286 (292)
T ss_dssp             C-------
T ss_pred             EeeCCCcc
Confidence            76554443

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.92  E-value=6.6e-23  Score=149.63  Aligned_cols=185  Identities=23%  Similarity=0.309  Sum_probs=139.6

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCC-ceE--EeCCceeEEEEecCCCCcCeEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ERF--SSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~--~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      ++|.+..+. . +.+..|+.+.|.|.+.+.|.+ .+.|++++..  +.... .++  ........|.|.++..+|+|.|+
T Consensus        18 ~~P~~~~p~-~-~~~~~G~~v~l~C~~~g~p~p-~i~W~~~g~~--l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (215)
T 3mtr_A           18 YAPKLQGPV-A-VYTWEGNQVNITCEVFAYPSA-TISWFRDGQL--LPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYN   92 (215)
T ss_dssp             EEEEEECCS-E-EEECTTCCEEEEEEEEEESCC-EEEEEETTEE--SSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEE
T ss_pred             cCCcccCCc-e-EEEECCCCEEEEEEEeecCCC-EEEEEECCeE--CCCCCCccEEEecCCCeeEEEEecCChhhCeEEE
Confidence            566664333 3 678899999999999999988 8999998743  22221 222  23344678999999999999999


Q ss_pred             EEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecC-CCCCCCeE-EEEEEEeCCccceeEEE-e---c
Q psy11549        134 CAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPG-YDGGLPQT-FTLELYSASDLNLLVNL-T---N  207 (261)
Q Consensus       134 C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~-~~~~~p~~-~~~~~~~~~~~~~~~~~-~---~  207 (261)
                      |.|.|..|....  .+.+.+..+|.+|..+.+. ..+..+.|.|.++ .+++.|+. |.+.|+..+........ .   .
T Consensus        93 C~a~n~~g~~~~--~~~l~v~~~P~~p~~~~~~-~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~  169 (215)
T 3mtr_A           93 CTAVNRIGQESL--EFILVQADTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEA  169 (215)
T ss_dssp             EEEECSSCEEEE--EEEEEECCCCCCCEEEEEE-EETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHH
T ss_pred             EEEEECCCceEE--EEEEEECCCCCCCcceEEE-EecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccc
Confidence            999999998765  5667777889998877764 5688899999854 46677765 88888876654211111 1   1


Q ss_pred             CCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeecc
Q psy11549        208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       208 ~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~  251 (261)
                      .....+.|.+  |.++..|.|+|.|.|.+|.+++|..+.+.+++
T Consensus       170 ~~~~~l~i~~--L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          170 SMEGIVTIVG--LKPETTYAVRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             HHHTEEEEEC--CCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred             cccccEEECC--CCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence            1127899999  99999999999999999999999999887653

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.92  E-value=6e-25  Score=172.01  Aligned_cols=229  Identities=15%  Similarity=0.141  Sum_probs=130.1

Q ss_pred             CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCc---eeEEEeeCCCcEEEEEEE-----
Q psy11549         12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR---IVIVGASRSESVDIHCAV-----   83 (261)
Q Consensus        12 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~---~~~~~~~~g~~~~l~C~~-----   83 (261)
                      ..++...+++|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|..+|......   .....+..|+.+.|.|.+     
T Consensus        71 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~  149 (349)
T 4dep_C           71 ENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCS-KVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYF  149 (349)
T ss_dssp             GGCEEEETTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSS
T ss_pred             CceEeecCCEEEEccCChhhCEEEEEEEecCCceE-EEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccc
Confidence            34566778899999999999999999999988776 556888888765433222   122567899999999985     


Q ss_pred             eeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC-ceE-EeeEEEEEEeCCCCC---
Q psy11549         84 EADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI-GTQ-VTPCLYQVVLAGKPQ---  158 (261)
Q Consensus        84 ~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~-~~~~~~~v~~~~~p~---  158 (261)
                      .+.|.+ .+.|++++..  +.. ...+...+  ..|.|.++..+|+|.|+|.|.|.. |.. .....+.+.+..++.   
T Consensus       150 ~g~p~~-~v~W~k~~~~--l~~-~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~  223 (349)
T 4dep_C          150 PSSVKP-TITWYMGCYK--IQN-FNNVIPEG--MNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAV  223 (349)
T ss_dssp             CTTSCC-EEEEEETTEE--CCS-CSSEEEET--TEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCC
T ss_pred             cCCCCc-eEEEeeCCEE--CCC-ccceeecC--CEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCC
Confidence            556666 8999998742  211 12333333  479999999999999999999976 443 123355565544321   


Q ss_pred             CCC-----c-ceEEeecCCeEEEEeecCC-CCCCCeEEEEEEEeCCccce---eEEE----ec---C---CCCcEEEcCC
Q psy11549        159 PPQ-----N-CSVRNETTSSVHISCTPGY-DGGLPQTFTLELYSASDLNL---LVNL----TN---L---DTPAFTLEDL  218 (261)
Q Consensus       159 ~p~-----~-~~v~~~~~~~~~l~c~~~~-~~~~p~~~~~~~~~~~~~~~---~~~~----~~---~---~~~~~~i~~~  218 (261)
                      +|.     . ..+....|+.+.|.|.+.. ..+.|...+.|+++......   ....    ..   .   ....|.|.++
T Consensus       224 ~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  303 (349)
T 4dep_C          224 PPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV  303 (349)
T ss_dssp             SCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-----
T ss_pred             CCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeec
Confidence            221     1 1113345899999999721 11344443444444322211   0000    00   0   0134889999


Q ss_pred             CCCCc-cEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        219 GLDGT-VLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       219 ~l~~~-~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      ..+|. |.|  +|.|.|..|....+..+.+..
T Consensus       304 ~~~d~~G~Y--~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          304 TSEDLKRSY--VCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             --------C--EEEEECSSCEEEEECC-----
T ss_pred             cHHHcCCcE--EEEEEcCCCcEEEEEEEeeec
Confidence            99999 999  999999999888887777754

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.92  E-value=4.6e-24  Score=169.30  Aligned_cols=242  Identities=14%  Similarity=0.147  Sum_probs=159.4

Q ss_pred             CC-CCeeccCCCCceEEEECCeEEEccCCCCC------CEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeC
Q psy11549          1 MA-GGIPLAHNTSARIILSNQSLVLQKVSRQS------AGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~-ng~~l~~~~~~~~~~~~~~L~i~~~~~~D------~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~   73 (261)
                      +| ||.++......+....+++|.|.+++.+|      +|.|+|.|.|..|...+..+.|.|..+|.+...... ..+.+
T Consensus        39 ~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~-~~v~~  117 (388)
T 2v5m_A           39 IRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNK-EHVIR  117 (388)
T ss_dssp             EETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCC-EEEET
T ss_pred             EcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEEEEEEccCCeEEecceEEEEccccccccCccc-eeeec
Confidence            35 88888755555566678899999999998      999999999998876567788888877766554444 67889


Q ss_pred             CCcEEEEEEEeeCCC--CceeEEEEcCCcccccc--CCceEEeCCceeEEEEecCCCCcC-eEEEEEEEcCCceEEe-e-
Q psy11549         74 SESVDIHCAVEADPP--ARSFKWKFNNSGETLDV--GSERFSSGSRGSMLRYTPVTELDY-GTLSCAAQNAIGTQVT-P-  146 (261)
Q Consensus        74 g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~~~-~-  146 (261)
                      |+.+.|.|.+.+.++  ...+.|++++.......  ...++.... ...|.|.++..+|. |.|+|.+.+..+.... . 
T Consensus       118 G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~  196 (388)
T 2v5m_A          118 GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP-SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA  196 (388)
T ss_dssp             TSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECT-TSCEEESSCCGGGGGCCEEEEEEETTTCCEEECS
T ss_pred             CCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEcc-CCcEEEecCCccccCeeEEEEeccCCCCceeecc
Confidence            999999999988764  24899999875322111  122333222 23699999999999 9999999987543221 1 


Q ss_pred             --EEEEEEeCC---CCCCCCc--ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeC-CccceeE----EEecCCCCcEE
Q psy11549        147 --CLYQVVLAG---KPQPPQN--CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSA-SDLNLLV----NLTNLDTPAFT  214 (261)
Q Consensus       147 --~~~~v~~~~---~p~~p~~--~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~  214 (261)
                        ..+.+....   .|..|..  .......|+.+.|.|.+  .+..+..+. |++.. .......    .........|.
T Consensus       197 ~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~--~g~p~p~v~-W~~~~~~~~~~~~~~~~~~~~~~~~~L~  273 (388)
T 2v5m_A          197 TKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA--QGFPAPSFR-WYKFIEGTTRKQAVVLNDRVKQVSGTLI  273 (388)
T ss_dssp             SCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCC--EEESCCEEE-EEEECTTSSCEEECCCSSSEEEETTEEE
T ss_pred             ccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEEC--CCCCCCEEE-EEecCCCCcccccccccCceecccCEEE
Confidence              123333211   1111111  11223469999999997  333334444 44442 2111000    00011246899


Q ss_pred             EcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        215 LEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       215 i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      |.+++..|.|.|  +|.|.|..|....+..+.+..
T Consensus       274 i~~v~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~~  306 (388)
T 2v5m_A          274 IKDAVVEDSGKY--LCVVNNSVGGESVETVLTVTA  306 (388)
T ss_dssp             ESSCCGGGCEEE--EEEEECSSCEEEEEEEEEEEE
T ss_pred             ECcCCHHHCeEE--EEEEecCCCceeEEEEEEEeC
Confidence            999999999999  999999999876666666654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.92  E-value=1.4e-24  Score=178.77  Aligned_cols=219  Identities=16%  Similarity=0.185  Sum_probs=139.8

Q ss_pred             EECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCce--eEEEeeCCCcEEEEEEEeeCCCCceeEE
Q psy11549         17 LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRI--VIVGASRSESVDIHCAVEADPPARSFKW   94 (261)
Q Consensus        17 ~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~~~~~~W   94 (261)
                      ..+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+.  ....+..|+.+.|.|.+.+.|.|..+.|
T Consensus       270 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W  348 (524)
T 2ec8_A          270 ERQATLTISSARVNDSGVFMCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQW  348 (524)
T ss_dssp             EEEEEEEESSCCTTTCEEEEEEEECSSCEE-EEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEE
T ss_pred             ceEEEEEECCCCHHHCEEEEEEEEecCCce-EEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEE
Confidence            345699999999999999999999999887 5588999998887654321  2377889999999999999998833999


Q ss_pred             EEcCCccccccCCceEEeCC------ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEE-e
Q psy11549         95 KFNNSGETLDVGSERFSSGS------RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVR-N  167 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~-~  167 (261)
                      ++++..  +.....++....      ....|.|.++..+|+|.|+|.|.|..|.....  +.+.+..+|.   ..... .
T Consensus       349 ~k~g~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~--~~l~V~~~P~---i~~~~~~  421 (524)
T 2ec8_A          349 IYMNRT--FTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIA--FNVYVNTKPE---ILTYDRL  421 (524)
T ss_dssp             ESSSCB--CSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEE--EEEEECEEEE---EEEEECC
T ss_pred             EECCee--ccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEE--EEEEEecCCe---EeecccC
Confidence            998743  222222333221      24689999999999999999999999986664  4455544443   11111 1


Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc----------eeE-EEecCCCCcEE----EcCCCCCCccEEEEEEEE
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLN----------LLV-NLTNLDTPAFT----LEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~----i~~~~l~~~~~Y~~~~~a  232 (261)
                      ..|   .|.|.+  . +.|..-+.|+++.....          ... .........+.    |.....+|.|.|  +|.|
T Consensus       422 ~~g---~l~C~~--~-g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y--~C~a  493 (524)
T 2ec8_A          422 VNG---MLQCVA--A-GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTV--ECKA  493 (524)
T ss_dssp             SSS---CEEEEE--E-EESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-------CEE
T ss_pred             cCc---EEEEEE--E-eecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEE--EEEE
Confidence            123   999997  3 44433334444422210          000 01111223333    333336899999  9999


Q ss_pred             EcCCCcCCceeeeeeeecc
Q psy11549        233 VNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~~~  251 (261)
                      .|.+|....+..+.|..+.
T Consensus       494 ~N~~G~~~~~~~l~V~e~~  512 (524)
T 2ec8_A          494 YNDVGKTSAYFNFAFKGNN  512 (524)
T ss_dssp             ECSSCEEECCCCCCC----
T ss_pred             EcCCCceEEEEEEEEecCC
Confidence            9999998888888776443

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.92  E-value=3.2e-24  Score=171.02  Aligned_cols=240  Identities=16%  Similarity=0.200  Sum_probs=156.2

Q ss_pred             CCCCeeccCCC--CceEEEECCeEEEc----cCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCC
Q psy11549          1 MAGGIPLAHNT--SARIILSNQSLVLQ----KVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRS   74 (261)
Q Consensus         1 ~~ng~~l~~~~--~~~~~~~~~~L~i~----~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g   74 (261)
                      +|||+++....  .......+++|.|.    +++.+|+|.|+|.|.|..|...+..+.|.|..+|...........+.+|
T Consensus        52 ~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G  131 (404)
T 3p3y_A           52 TRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEG  131 (404)
T ss_dssp             EETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETT
T ss_pred             EECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccC
Confidence            47888875332  22222345677775    8899999999999999988876677889998877654433333678899


Q ss_pred             CcEEEEEEE-eeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCc-CeEEEEEEEcCCceEEe-eEEEEE
Q psy11549         75 ESVDIHCAV-EADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD-YGTLSCAAQNAIGTQVT-PCLYQV  151 (261)
Q Consensus        75 ~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~~-~~~~~v  151 (261)
                      +.+.|.|.+ .+.|.+ .+.|++++. ... ....++.... ...|.|.++...| .|.|+|.+.|..+.... ...+.+
T Consensus       132 ~~v~l~C~~~~~~p~~-~v~W~~~~~-~~~-~~~~~~~~~~-~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l  207 (404)
T 3p3y_A          132 APLTLQCNPPPGLPSP-VIFWMSSSM-EPI-TQDKRVSQGH-NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTL  207 (404)
T ss_dssp             SCEEECCCCCCCSSCC-EEEEECTTS-CBC-CCCSSEEECT-TSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCE
T ss_pred             CcEEEEeCCCCCCCCC-eEEEeCCCc-ccc-CCCCcEEEcC-CCcEEEEeeeeccCCcceEEEEEeccccceeccCceeE
Confidence            999999999 566666 899998763 222 1222333322 2369999999999 59999999998765322 112233


Q ss_pred             EeCCCC----CCCCc-------ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCC
Q psy11549        152 VLAGKP----QPPQN-------CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGL  220 (261)
Q Consensus       152 ~~~~~p----~~p~~-------~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  220 (261)
                      .+...+    .+|..       .......|+.+.|.|.+  .+ .|.....|++..................|.|.+++.
T Consensus       208 ~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~--~g-~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~  284 (404)
T 3p3y_A          208 KVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA--SG-VPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSE  284 (404)
T ss_dssp             EEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCB--CC-SSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCG
T ss_pred             EEeccCCccccCCccccccCCCCCceEecCCCEEEEEEE--CC-CCCCcEEEEECCEECCCCcccccccCceEEEccCCH
Confidence            332111    11111       12334569999999987  33 343333444443322111111222346899999999


Q ss_pred             CCccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        221 DGTVLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       221 ~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      .|.|.|  +|.|.|..|....+..+.+..
T Consensus       285 ~d~G~Y--~C~a~n~~g~~~~~~~l~V~~  311 (404)
T 3p3y_A          285 EDSGEY--FCLASNKMGSIRHTISVRVKA  311 (404)
T ss_dssp             GGCEEE--EEEEECSSCEEEEEEEEEEEE
T ss_pred             hHCEEE--EEEEEeCCCcEEEEEEEEEeC
Confidence            999999  999999999876666666553

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.92  E-value=3.5e-24  Score=175.81  Aligned_cols=222  Identities=15%  Similarity=0.159  Sum_probs=137.9

Q ss_pred             CCCCeeccCCCCc--------eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCc-eeEEEe
Q psy11549          1 MAGGIPLAHNTSA--------RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDR-IVIVGA   71 (261)
Q Consensus         1 ~~ng~~l~~~~~~--------~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~-~~~~~~   71 (261)
                      +|||++|......        ......++|.|.+++.+|+|.|+|.|.|.    .+..+.|.|..+|.+.... .....+
T Consensus       263 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~----~~~~~~L~V~~~p~i~~~~~~~~~~v  338 (527)
T 3qs9_E          263 ELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH----PSQSALVTIVEKGFINATNSSEDYEI  338 (527)
T ss_dssp             ECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE----EEEEEEEEEC--CEEECCCSCCEECC
T ss_pred             EECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC----CCceEEEEEEccCccccccCcccEEE
Confidence            4778877532111        11233457999999999999999999887    3667889998888765332 223667


Q ss_pred             eCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      ..|+.+.|.|.+.+.|.| .+.|++++..  +.... .+..  ....|.|.++..+|+|.|+|.|.|..|....  .+.+
T Consensus       339 ~~G~~v~L~C~~~g~P~p-~i~W~k~g~~--l~~~~-~~~~--~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~--~~~L  410 (527)
T 3qs9_E          339 DQYEEFCFSVRFKAYPQI-RCTWTFSRKS--FPCEQ-KGLD--NGYSISKFCNHKHQPGEYIFHAENDDAQFTK--MFTL  410 (527)
T ss_dssp             CTTCCCCEEEEEEEESCC-EEEEEETTEE--EECBC-CBCS--SSSEEEEECCCTTCCSCEEEEEEETTEEEEE--EEEE
T ss_pred             cCCCeEEEEEEEEecCCC-EEEEEECCEE--CcCCc-cccc--CCcEEEEecCCcccCEEEEEEEEeCCCcEEE--EEEE
Confidence            899999999999999988 7999998742  22211 1111  2347999999999999999999999988776  4555


Q ss_pred             EeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc--------eeEE------EecC--CCCcEEE
Q psy11549        152 VLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN--------LLVN------LTNL--DTPAFTL  215 (261)
Q Consensus       152 ~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--------~~~~------~~~~--~~~~~~i  215 (261)
                      .|..+|.   . ...   .....|.|.+  .+.+++.+.|. +..+...        ..+.      ....  ....+.|
T Consensus       411 ~V~~~P~---i-~~~---~~~~~l~C~a--~g~P~p~i~W~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i  480 (527)
T 3qs9_E          411 NIRRKPQ---V-LAE---ASASQASCFS--DGYPLPSWTWK-KCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNM  480 (527)
T ss_dssp             C--CCCE---E-EEC---CCCE---EEE--ECSSCCEEEEE-CCC-----CCCCCCCCEEEC---------CEEEEECCC
T ss_pred             EEecCCe---E-EEe---CCCCEEEEEE--EEEcCCeEEEE-ECCCCcCCCccccccccceeccccccCCceEEEEEEEE
Confidence            5555543   1 111   1234679997  33333444443 3221110        0010      0000  1123444


Q ss_pred             cCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        216 EDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       216 ~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      ..  ..+.|.|  +|.|.|.+|..+.+..+.+.
T Consensus       481 ~~--~~d~G~Y--~C~A~N~~G~~~~~~~L~V~  509 (527)
T 3qs9_E          481 SE--AIKGFLV--KCCAYNSLGTSCETILLNSP  509 (527)
T ss_dssp             CC--SSCSCEE--EEEEECSSCEEEEEEEC---
T ss_pred             EE--cCCCEEE--EEEEEeCCCCceeEEEEecC
Confidence            45  7899999  99999999998877777543

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.92  E-value=3.2e-23  Score=165.91  Aligned_cols=210  Identities=14%  Similarity=0.113  Sum_probs=129.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCc
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSG  100 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~  100 (261)
                      +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+.....  .....|+.+.|.|.+.+.|.| .+.|++++..
T Consensus       104 sL~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~~~~p--~~~~~~~~~~L~C~a~G~P~P-~i~W~k~~~~  179 (423)
T 3qs7_E          104 SMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTLRRP--YFRKMENQDALVCISESVPEP-IVEWVLCDSQ  179 (423)
T ss_dssp             EEEESSCCSSSCSEEEEEEEC--CEE-EEEEEEEEC-----CEEEE--EEEECSSSSCEEEEEEESSCC-EEEEEEC---
T ss_pred             EEEEeecCcccCEEEEEEEEcCCCcE-EEEEEEEEecCccccccCC--cEeccCCceEEEEEEeeecCC-eEEEEECCCC
Confidence            69999999999999999999998876 6678888886665431111  234568889999999999988 8999997642


Q ss_pred             cccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecC
Q psy11549        101 ETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPG  180 (261)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~  180 (261)
                      ..................+     ...|+|.|+|.|.|..|.... ..+.+.+..+|..+.. ......|+.+.|.|.+ 
T Consensus       180 ~~~~~~~~~~~~~~~~~~l-----~~~d~G~Y~C~A~N~~G~~~~-~~~~l~V~~~p~~~~~-~~~v~~G~~v~L~C~~-  251 (423)
T 3qs7_E          180 GESCKEESPAVVKKEEKVL-----HELFGTDIRCCARNELGRECT-RLFTIDLNQTPQTTLP-QLFLKVGEPLWIRCKA-  251 (423)
T ss_dssp             ----------CEEECCSEE-----CCCCSSCEEEEEECSSCEEEE-ECEEEESSSCCCSSTT-EEEEETTSCEEEEEEE-
T ss_pred             CccccccccccccccceEE-----ecccCeEEEEEEEcCCCCcce-eeEEEEEecCCccCCC-ceEEeCCCeEEEEEEE-
Confidence            1100000000000000011     578999999999999887655 3566777666653322 3334569999999998 


Q ss_pred             CCCCCCeEEEEEEEeCCccce--eE---EEe----cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        181 YDGGLPQTFTLELYSASDLNL--LV---NLT----NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       181 ~~~~~p~~~~~~~~~~~~~~~--~~---~~~----~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                       .+..|...+.|++.......  ..   ...    ......|.|.+++.+|+|.|  +|.|.|.   ...+..+.+.
T Consensus       252 -~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~A~N~---~~~~~~L~V~  322 (423)
T 3qs7_E          252 -VHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYY--TCSSSKH---PSQSALVTIV  322 (423)
T ss_dssp             -EESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEE--EEEETTE---EEEEEEEEEE
T ss_pred             -EcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEE--EEEEecC---CCceEEEEEE
Confidence             44345332334454332211  11   111    01124699999999999999  9999999   3444444443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.92  E-value=1.8e-22  Score=168.36  Aligned_cols=221  Identities=16%  Similarity=0.148  Sum_probs=148.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcce----eeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCcee----
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEAT----SNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSF----   92 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~----s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~----   92 (261)
                      +|.|.+++.+|+|.|+|.|.|. |...    ...+.|.|..+|.+...+.. ..+..|+.+.|.|.+.+.|.+ .+    
T Consensus       291 ~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~v~l~C~~~~~p~p-~i~~w~  367 (585)
T 2ocw_A          291 SVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTV-VKGVAGSSVAVLCPYNRKESK-SIKYWC  367 (585)
T ss_pred             EEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcc-eEEEeCCcEEEEEecCCCCCc-cEEEEE
Confidence            7999999999999999999995 4432    26788999988887665544 678899999999999988887 45    


Q ss_pred             EEEE--cCCccccc--------cCCceEEe----CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549         93 KWKF--NNSGETLD--------VGSERFSS----GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus        93 ~W~~--~~~~~~~~--------~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      .|++  ++....+.        ....++..    ......|.|.++..+|+|.|+|.| |..|.......+.|.. .+|.
T Consensus       368 ~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~-~~p~  445 (585)
T 2ocw_A          368 LWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIE-GEPN  445 (585)
T ss_pred             EEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEec-Cccc
Confidence            7988  65310111        01122222    223345999999999999999999 8777666544444432 1232


Q ss_pred             --CCCcceEEeecCCeEEEEeecCC-CCCCCeEEEEEEEeCCcccee--------EEEe--cCCCCcEEEcCCCCCCccE
Q psy11549        159 --PPQNCSVRNETTSSVHISCTPGY-DGGLPQTFTLELYSASDLNLL--------VNLT--NLDTPAFTLEDLGLDGTVL  225 (261)
Q Consensus       159 --~p~~~~v~~~~~~~~~l~c~~~~-~~~~p~~~~~~~~~~~~~~~~--------~~~~--~~~~~~~~i~~~~l~~~~~  225 (261)
                        .|....  ...|+.+.|.|.+.. ..+.|...+.|+++.......        +...  ......|.|.++..+|+|.
T Consensus       446 ~~~~~~~~--v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~  523 (585)
T 2ocw_A          446 LKVPGNVT--AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGW  523 (585)
T ss_pred             cccCCcee--EecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeE
Confidence              333333  356999999999732 225555555555553322100        1111  1122589999999999999


Q ss_pred             EEEEEEEEcCCCcCCce-eeeeeeec
Q psy11549        226 MRVVISGVNAKGRSLPV-IWDDFSMS  250 (261)
Q Consensus       226 Y~~~~~a~N~~G~~~~s-~~~~~~~~  250 (261)
                      |  +|.|.|..|.++.. ..+.|..+
T Consensus       524 Y--~C~a~N~~G~~~~~~~~l~V~~~  547 (585)
T 2ocw_A          524 Y--WCGVKQGHFYGETAAVYVAVEER  547 (585)
T ss_pred             E--EEEeEeCCCccEEEEEEEEEEee
Confidence            9  99999999977754 55555544

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.92  E-value=2.8e-22  Score=167.23  Aligned_cols=205  Identities=14%  Similarity=0.120  Sum_probs=139.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCc
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSG  100 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~  100 (261)
                      +|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..+|.+...... ..+..|+.+.|.|.+.+.+++..+.|++++..
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~~~~~-~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~  153 (585)
T 2ocw_A           76 VVNIAQLSQDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKV-YTVDLGRTVTINCPFKTENAQKRKSLYKQIGL  153 (585)
T ss_pred             EEEECCCCcccCEEEEEEcccCCCCc-eEEEEEEEecCccccCCCcc-EEEEcCCCEEEEEEecCCCCCccEEEEECCCC
Confidence            69999999999999999999988776 67789999988887655544 77889999999999997766548999998642


Q ss_pred             ccccc----------CCceEE--eCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceE
Q psy11549        101 ETLDV----------GSERFS--SGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSV  165 (261)
Q Consensus       101 ~~~~~----------~~~~~~--~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v  165 (261)
                      .....          ...++.  ..+   ....|.|.++..+|+|.|+|.+.|..+.....  +.+.|..+|  |..+.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~--~~l~V~~~~--p~~~~~  229 (585)
T 2ocw_A          154 YPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKN--ADLQVLKPE--PELVYE  229 (585)
T ss_pred             CceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccce--EEEEEccCC--CceeEE
Confidence            11100          012222  222   22379999999999999999999988876654  444443332  333333


Q ss_pred             EeecCCeEEEEeecCCCCCCC--eEEEEEEEeCCcc--------------ceeEEEec-CCCC--cEEEcCCCCCCccEE
Q psy11549        166 RNETTSSVHISCTPGYDGGLP--QTFTLELYSASDL--------------NLLVNLTN-LDTP--AFTLEDLGLDGTVLM  226 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~p--~~~~~~~~~~~~~--------------~~~~~~~~-~~~~--~~~i~~~~l~~~~~Y  226 (261)
                        ..|+.+.|.|..  ....|  ..+.|.+++....              ........ ....  .|.|.+++..|.|.|
T Consensus       230 --~~G~~v~l~C~~--~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y  305 (585)
T 2ocw_A          230 --DLRGSVTFHCAL--GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRY  305 (585)
T ss_pred             --cCCCcEEEEEEc--CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEE
Confidence              469999999996  22223  3344432333110              00111111 1123  699999999999999


Q ss_pred             EEEEEEEcCCC
Q psy11549        227 RVVISGVNAKG  237 (261)
Q Consensus       227 ~~~~~a~N~~G  237 (261)
                        +|.|.|..+
T Consensus       306 --~C~a~n~g~  314 (585)
T 2ocw_A          306 --LCGAHSDGQ  314 (585)
T ss_pred             --EEEEEcCCC
Confidence              999999533

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.92  E-value=1.9e-23  Score=162.33  Aligned_cols=219  Identities=16%  Similarity=0.208  Sum_probs=144.4

Q ss_pred             CCeEEEccCCCCCCEeEEEEEE-eCCCcceeeeEEEEEEeeceeecC-ceeEEEeeCC---CcEEEEEE-EeeCCCCcee
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAI-NTKGEATSNQLKLRVKYAPICKSD-RIVIVGASRS---ESVDIHCA-VEADPPARSF   92 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~-~~~~~~~s~~~~l~V~~~p~~~~~-~~~~~~~~~g---~~~~l~C~-~~~~~~~~~~   92 (261)
                      +++|.|.+++.+|+|.|+|.+. +..+.. +..+.|.|..+|.+... ....+.+..|   +.+.|.|. +.+.|.+ .+
T Consensus        91 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~-~i  168 (331)
T 3u83_A           91 DGTIRLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPS-VV  168 (331)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCC-EE
T ss_pred             CceEEEcccCcccCcEEEEEEEecCCCcc-EEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCc-eE
Confidence            5689999999999999999854 445544 67789999888776321 1122567778   77999998 7777777 89


Q ss_pred             EEEEcCCccccc----cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC----CCCcce
Q psy11549         93 KWKFNNSGETLD----VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ----PPQNCS  164 (261)
Q Consensus        93 ~W~~~~~~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~----~p~~~~  164 (261)
                      .|+++..+....    .....+..   .+.|.|.++..+|.|.|+|.|.|..+.....  +.+.+..+|.    ++....
T Consensus       169 ~W~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~--~~l~V~~~P~~~~~~~~~~~  243 (331)
T 3u83_A          169 SWETRLKGEAEYQEIRNPNGTVTV---ISRYRLVPSREAHQQSLACIVNYHMDRFKES--LTLNVQYEPEVTIEGFDGNW  243 (331)
T ss_dssp             EEEESSCCEEEEEEEECTTSCEEE---EEEEEECCCGGGTTCEEEEEEEETTEEEEEE--EECCEEEEEEEEEECCCSCC
T ss_pred             EEEcCCCCccccceeECCCCcEEE---EEEEEEEeccccCCCEEEEEEecCCCcceee--EEEEEecCCeEEEecCCCce
Confidence            999864332210    01111111   2368888999999999999999998776654  3344433332    111111


Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEc-CCCCCCccEEEEEEEEEcCCCcCCcee
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLE-DLGLDGTVLMRVVISGVNAKGRSLPVI  243 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~~~~Y~~~~~a~N~~G~~~~s~  243 (261)
                        ...|+.+.|.|.+  .+..+.....|++...........   ....|.|. ++..+|.|.|  +|.|.|..|....+.
T Consensus       244 --~~~g~~~~l~C~~--~g~p~p~~i~W~~~~~~~~~~~~~---~~~~L~i~~~v~~~d~G~Y--~C~a~N~~G~~~~~~  314 (331)
T 3u83_A          244 --YLQRMDVKLTCKA--DANPPATEYHWTTLNGSLPKGVEA---QNRTLFFKGPINYSLAGTY--ICEATNPIGTRSGQV  314 (331)
T ss_dssp             --BTTCCCEEEEEEE--EEESCCCEEEEEETTBSCCTTEEE---ETTEEEECSCCCGGGCEEE--EEEEEETTEEEEEEE
T ss_pred             --EeCCCeEEEEEeC--cCCCCCCEEEEEECCCccccccee---cCcEEEEeCCCccccCeEE--EEEEEeccccceEEE
Confidence              2458999999997  333333324555554433222211   23679999 8999999999  999999999887777


Q ss_pred             eeeeeecccc
Q psy11549        244 WDDFSMSGAH  253 (261)
Q Consensus       244 ~~~~~~~~~~  253 (261)
                      .+.|......
T Consensus       315 ~l~V~~~~~~  324 (331)
T 3u83_A          315 EVNITEAAAL  324 (331)
T ss_dssp             EECCBC----
T ss_pred             EEEEeccchh
Confidence            7776654433

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.91  E-value=9.8e-22  Score=155.93  Aligned_cols=237  Identities=18%  Similarity=0.151  Sum_probs=158.0

Q ss_pred             CCCCeeccCCCC-ceEEEEC---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCc
Q psy11549          1 MAGGIPLAHNTS-ARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSES   76 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~   76 (261)
                      +|||++|..... +.....+   .+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|...  .........+..
T Consensus       135 ~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~P--~~~~~~~~~~~~  211 (389)
T 2jll_A          135 RRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR-FQEYILALADVPSSP--YGVKIIELSQTT  211 (389)
T ss_dssp             EETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEE-EEEEEEEECCCCCCC--EEEEEEEECSSC
T ss_pred             EECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcE-EEEEEEEecCCCCCC--cceEEeeccCCE
Confidence            478888875432 3333333   379999999999999999999999986 556777776555321  111133345678


Q ss_pred             EEEEEEEeeCC--CCc---eeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         77 VDIHCAVEADP--PAR---SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        77 ~~l~C~~~~~~--~~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      +.|.|......  .+.   .+.|...+.. ..    ...........+.|.++...+.|.|+|.|.|..|....+..+.+
T Consensus       212 ~~l~w~~p~~~~g~pi~~y~v~~~~~~~~-~~----~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~  286 (389)
T 2jll_A          212 AKVSFNKPDSHGGVPIHHYQVDVKEVASE-IW----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIF  286 (389)
T ss_dssp             EEEEEECCSCCTTSCEEEEEEEEEETTCS-CC----EEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEE
T ss_pred             EEEEEeCCCCCCCcceEEEEEEEEECCCc-cc----EEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEE
Confidence            99999854322  121   3667665431 11    11222333457999999999999999999999886544323333


Q ss_pred             E--eCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEE
Q psy11549        152 V--LAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       152 ~--~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      .  ...+|.+|. +.........+.|+|.++.+++.++ .|.++|+......... .........+.|.+  |.+++.|+
T Consensus       287 ~t~~~~~p~~p~-~~~~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~~~t~Y~  363 (389)
T 2jll_A          287 QTLPVREPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEH--LQWTMGYE  363 (389)
T ss_dssp             ECCCCCCCCCCC-EEEEEETTTEEEEEECCCCCCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECS--CCTTCEEE
T ss_pred             EecCCCCCCCCc-cccccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCC--cCCCCEEE
Confidence            2  223666775 4455568999999999877777664 4999988754432111 22334557889999  99999999


Q ss_pred             EEEEEEcCCCcCCceeeeeee
Q psy11549        228 VVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       228 ~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      |+|.|.|..|.|++|.+...+
T Consensus       364 ~~V~A~n~~G~s~~s~~~~~T  384 (389)
T 2jll_A          364 VQITAANRLGYSEPTVYEFSM  384 (389)
T ss_dssp             EEEEEEC-CCBCCCEEEEEEC
T ss_pred             EEEEEEcCCcCCCceeeEecC
Confidence            999999999999999884433

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.91  E-value=1.1e-22  Score=175.81  Aligned_cols=234  Identities=18%  Similarity=0.221  Sum_probs=160.4

Q ss_pred             CCCCeeccCCCCceEE---EEC----CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHNTSARII---LSN----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~---~~~----~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~   73 (261)
                      +|||.++..+......   ..+    .+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+.....  ..+..
T Consensus       464 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~--~~v~~  540 (816)
T 3dmk_A          464 ELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA-EHSAKLNVYGLPYIRQMEK--KAIVA  540 (816)
T ss_dssp             EETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEE-EEEEEEEECSSCEECCCCC--EEEET
T ss_pred             EECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeE-EEEEEEEEecCCeeEccCC--eEEec
Confidence            4688888644331111   112    269999999999999999999999886 6778999988886654332  56779


Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      |+.+.|.|.+.+.|.+ .+.|++++..  +.... +..... ...|.|.++. .+|+|.|+|.|.|..|.... ..+.+.
T Consensus       541 G~~v~l~C~~~g~p~~-~i~W~k~~~~--l~~~~-~~~~~~-~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~-~~~~v~  614 (816)
T 3dmk_A          541 GETLIVTCPVAGYPID-SIVWERDNRA--LPINR-KQKVFP-NGTLIIENVERNSDQATYTCVAKNQEGYSAR-GSLEVQ  614 (816)
T ss_dssp             TCCEEEECCEECSSEE-EEEEEETTEE--SCCST-TEEECT-TSEEEESSCCHHHHCEEEEEEEEESSSCEEE-EEEEEE
T ss_pred             CCeEEEEEEecCCCCC-EEEEEECCeE--cccCC-ceEEec-CCeEEEEecCccccCEEEEEEEEECCCceee-eeEEEE
Confidence            9999999999998877 8999998743  22222 222221 2269999998 68999999999999875433 244555


Q ss_pred             eCCCCC----CCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccc----eeEEEecCCCCcEEEcCCCCCCc
Q psy11549        153 LAGKPQ----PPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLN----LLVNLTNLDTPAFTLEDLGLDGT  223 (261)
Q Consensus       153 ~~~~p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~l~~~  223 (261)
                      +..+|.    .+....+  ..|+.+.|.|.+  .++.+. .+.| +++.....    ............|.|.++...|.
T Consensus       615 v~~~p~~~~~~~~~~~~--~~G~~v~L~C~~--~~~~~~~~i~W-~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~  689 (816)
T 3dmk_A          615 VMVLPRIIPFAFEEGPA--QVGQYLTLHCSV--PGGDLPLNIDW-TLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHA  689 (816)
T ss_dssp             EECCCCCBCCCCCSSCE--ESSCEEEEEEBC--CCSSSCCEEEE-EETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGC
T ss_pred             EecCCcccccccccccc--CCCCeEEEEEEE--eCCCCCCEEEE-EECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhC
Confidence            444443    1222333  459999999997  444443 4444 44432211    11122223446799999999999


Q ss_pred             cEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        224 VLMRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       224 ~~Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      |.|  +|.|.|..|....+..+.+..+
T Consensus       690 G~Y--~C~a~N~~g~~~~~~~l~V~~~  714 (816)
T 3dmk_A          690 GNF--TCHARNLAGHQQFTTPLNVYVP  714 (816)
T ss_dssp             EEE--EEEEECSSCEEEEEEEECEEEE
T ss_pred             EEE--EEEEEeCCccEEEEEEEEEEeC
Confidence            999  9999999998888877776644

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.91  E-value=1.1e-23  Score=167.54  Aligned_cols=240  Identities=18%  Similarity=0.226  Sum_probs=152.7

Q ss_pred             CCCCeeccCCCC-ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549          1 MAGGIPLAHNTS-ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      +|||++|..... ......+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.+.+....... ...+.+|+.+.|
T Consensus        42 ~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~-~~~~~~G~~v~l  120 (395)
T 1bih_A           42 KKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTH-EKTPIEGRPFQL  120 (395)
T ss_dssp             EESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCEEE-EECCBTTEEEEE
T ss_pred             EECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcCCc-ceeeeeCCcEEE
Confidence            578998875443 233345679999999999999999999998887655567777765433222222 366789999999


Q ss_pred             EEEE-eeCCCCceeEEEEcCCccccccC----CceEEeCCceeEEEEecCCCCcCe---EEEEEEEcCCceEEeeE-EEE
Q psy11549         80 HCAV-EADPPARSFKWKFNNSGETLDVG----SERFSSGSRGSMLRYTPVTELDYG---TLSCAAQNAIGTQVTPC-LYQ  150 (261)
Q Consensus        80 ~C~~-~~~~~~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g---~y~C~~~~~~~~~~~~~-~~~  150 (261)
                      .|.+ .+.|.+ .+.|++++........    ..++..... ..|.|.++..+|.|   .|+|.+.|..+...... ...
T Consensus       121 ~C~~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~  198 (395)
T 1bih_A          121 DCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGPD-GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE  198 (395)
T ss_dssp             CCCCCEEESCC-EEEEEEEETTSCGGGCCCCCCTTEEECTT-SCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEE
T ss_pred             EecCCCCCCCC-eEEEEecCCCcCcccccccccccEEEcCC-CcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEE
Confidence            9996 677777 8999997622111111    223333222 26999999999999   99999999887643321 112


Q ss_pred             EEeCCCCC-------CCC--cceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc----eeEEEe-cCCCCcEEEc
Q psy11549        151 VVLAGKPQ-------PPQ--NCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN----LLVNLT-NLDTPAFTLE  216 (261)
Q Consensus       151 v~~~~~p~-------~p~--~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~i~  216 (261)
                      +.+..++.       +|.  ...+....|+.+.|.|.+  . +.|.....|++......    ...... ......|.|.
T Consensus       199 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~--~-g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~  275 (395)
T 1bih_A          199 IKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY--G-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFK  275 (395)
T ss_dssp             ECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEE--E-CSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEES
T ss_pred             ecccccccccccCCcCceecCCceEEECCCcEEEEEEe--c-cCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEc
Confidence            22222211       110  012233569999999997  3 34433344444432211    011111 1222479999


Q ss_pred             CCCCCCccEEEEEEEEEcCCCcCCc-eeeeeee
Q psy11549        217 DLGLDGTVLMRVVISGVNAKGRSLP-VIWDDFS  248 (261)
Q Consensus       217 ~~~l~~~~~Y~~~~~a~N~~G~~~~-s~~~~~~  248 (261)
                      +++..|.|.|  +|.|.|..|.... +..+.+.
T Consensus       276 ~~~~~d~G~Y--~C~a~n~~g~~~~~~~~l~V~  306 (395)
T 1bih_A          276 TTLPEDEGVY--TCEVDNGVGKPQKHSLKLTVV  306 (395)
T ss_dssp             SCCGGGCEEE--EEEECCSSSSCEEEEEEEEEE
T ss_pred             cCChhhCEEE--EEEEEeCCCCceEEEEEEEEE
Confidence            9999999999  9999999997654 5555554

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.91  E-value=8e-24  Score=161.38  Aligned_cols=218  Identities=11%  Similarity=0.088  Sum_probs=129.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcce--eeeEEEEEEeeceeecCce---eEEEeeCCCcEEEEEEEeeCCCCceeEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEAT--SNQLKLRVKYAPICKSDRI---VIVGASRSESVDIHCAVEADPPARSFKW   94 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~--s~~~~l~V~~~p~~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~~~~~W   94 (261)
                      ++|.|.+++.+|+|.|+|.|.|..|...  +..+.|.|..+........   ..+.+.+|+.+.|.|.+. .|.+ .+.|
T Consensus        51 ~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~-~v~w  128 (289)
T 3mjg_X           51 SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQL-VVTL  128 (289)
T ss_dssp             EEEEECSCCGGGCEEEEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTS-CEEE
T ss_pred             EEEEEccCChhhCEEEEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCc-eEEE
Confidence            4899999999999999999999887632  3344444443222221111   115678999999999998 5555 7999


Q ss_pred             EEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCC--CCC---CCCcceEEeec
Q psy11549         95 KFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG--KPQ---PPQNCSVRNET  169 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~--~p~---~p~~~~v~~~~  169 (261)
                      ++.+++..+.   ..+....   .+.    ...|+|.|+|.|.+..+..... .+.+.+..  +|.   .|....  ...
T Consensus       129 ~~~~~~~~~~---~~~~~~~---~~~----~~~d~G~Y~C~a~n~~~~~~s~-~~~l~v~~~~~p~i~~~~~~~~--v~~  195 (289)
T 3mjg_X          129 HEKKGDVALP---VPYDHQR---GFS----GIFEDRSYICKTTIGDREVDSD-AYYVYRLQVSSINVSVNAVQTV--VRQ  195 (289)
T ss_dssp             EESSCCSCCC---CCEETTT---EEE----ECCCSSEEEEEEEETTEEEECC-CEEEEECCCCCCCCEEEESCSE--EET
T ss_pred             EeCCCCCccc---eeecCCc---Cee----eeccCcEEEEEEEeCCceeeee-eEEEEecCCCCCCcEEeCCcce--eEc
Confidence            8875433321   1111111   121    2568999999999876655442 23444433  222   112222  346


Q ss_pred             CCeEEEEeecCCCCCCCeEEEEEEEeCCccc--eeE-EEe----cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549        170 TSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLV-NLT----NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       170 ~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--~~~-~~~----~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      |+.+.|.|.+  .+..++.+.|.+.......  ... ...    ......|.|.++..+|.|.|  +|.|.|.+|....+
T Consensus       196 G~~v~L~C~~--~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~~~~  271 (289)
T 3mjg_X          196 GENITLMCIV--IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTY--TCNVTESVNDHQDE  271 (289)
T ss_dssp             TSCEEEEEEE--ESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEE--EEEEEETTTTEEEE
T ss_pred             CCCEEEEEEE--CCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEE--EEEeecCCCCceeE
Confidence            9999999997  3333344444422211111  011 111    11236899999999999999  99999999999999


Q ss_pred             eeeeeeecccccCC
Q psy11549        243 IWDDFSMSGAHYAD  256 (261)
Q Consensus       243 ~~~~~~~~~~~~~~  256 (261)
                      ..+.+.......+.
T Consensus       272 ~~l~v~~~~~~~~~  285 (289)
T 3mjg_X          272 KAINITVVESGHHH  285 (289)
T ss_dssp             EEEEEEEEC-----
T ss_pred             EEEEEEEEecCccc
Confidence            88888766555443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.91  E-value=9.7e-24  Score=173.20  Aligned_cols=210  Identities=11%  Similarity=0.049  Sum_probs=139.1

Q ss_pred             ccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCcccc
Q psy11549         25 QKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETL  103 (261)
Q Consensus        25 ~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~  103 (261)
                      ..+..+|+|.|+|.|.|..|...+..+.|.|..+|..  ++. ...+..|+.+.|.|.+. +.|.+ .+.|++++.....
T Consensus       196 ~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~-~~~v~~G~~v~L~C~~~~g~p~p-~i~W~k~g~~l~~  271 (527)
T 3qs9_E          196 KVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLP-QLFLKVGEPLWIRCKAVHVNHGF-GLTWELENKALEE  271 (527)
T ss_dssp             SEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCC-EEEECTTSCEEEEEEEEESSSCC-CEEEECSSSCCCG
T ss_pred             eeccccCCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCC-ceEEeCCCeEEEEEEEccCCCCe-EEEEEECCEECCC
Confidence            3456899999999999999987565688888877765  223 36788999999999997 66666 8999998753211


Q ss_pred             ccCC--ceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC---CCCcceEEeecCCeEEE
Q psy11549        104 DVGS--ERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTSSVHI  175 (261)
Q Consensus       104 ~~~~--~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~---~p~~~~v~~~~~~~~~l  175 (261)
                      ....  ..+..   ......|.|.++..+|+|.|+|.|.|.   ...  .+.+.|..+|.   .|....+....|+.+.|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~--~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L  346 (527)
T 3qs9_E          272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQ--SALVTIVEKGFINATNSSEDYEIDQYEEFCF  346 (527)
T ss_dssp             GGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEE--EEEEEEC--CEEECCCSCCEECCCTTCCCCE
T ss_pred             CceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCc--eEEEEEEccCccccccCcccEEEcCCCeEEE
Confidence            1000  00110   112346999999999999999999987   333  45555555552   22222344456999999


Q ss_pred             EeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        176 SCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       176 ~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      .|.+  . +.|..-+.|+++......... .......+.|.+++..|+|.|  +|.|.|..|....+..+.+..
T Consensus       347 ~C~~--~-g~P~p~i~W~k~g~~l~~~~~-~~~~~~~L~I~~v~~~D~G~Y--tC~A~N~~g~~~~~~~L~V~~  414 (527)
T 3qs9_E          347 SVRF--K-AYPQIRCTWTFSRKSFPCEQK-GLDNGYSISKFCNHKHQPGEY--IFHAENDDAQFTKMFTLNIRR  414 (527)
T ss_dssp             EEEE--E-EESCCEEEEEETTEEEECBCC-BCSSSSEEEEECCCTTCCSCE--EEEEEETTEEEEEEEEEC--C
T ss_pred             EEEE--E-ecCCCEEEEEECCEECcCCcc-cccCCcEEEEecCCcccCEEE--EEEEEeCCCcEEEEEEEEEec
Confidence            9997  3 344333444454322211111 112346789999999999999  999999999877776666653

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.91  E-value=3.8e-23  Score=164.34  Aligned_cols=221  Identities=15%  Similarity=0.209  Sum_probs=145.6

Q ss_pred             CceEEEECCeEEEccCCCCCCE---eEEEEEEeCCCcceeeeE--EEEEEe----------eceeecCceeEEEeeCCCc
Q psy11549         12 SARIILSNQSLVLQKVSRQSAG---TYKCSAINTKGEATSNQL--KLRVKY----------APICKSDRIVIVGASRSES   76 (261)
Q Consensus        12 ~~~~~~~~~~L~i~~~~~~D~G---~Y~C~~~~~~~~~~s~~~--~l~V~~----------~p~~~~~~~~~~~~~~g~~   76 (261)
                      .+.....+++|.|.+++.+|+|   .|+|.+.|..+.......  .+.+..          .|.+.  .. ...+..|+.
T Consensus       153 ~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~-~~~~~~G~~  229 (395)
T 1bih_A          153 RRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYV--SK-DMMAKAGDV  229 (395)
T ss_dssp             TTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEE--CC-SEEEETTSC
T ss_pred             ccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceec--CC-ceEEECCCc
Confidence            4455566789999999999999   999999999887522211  111111          22221  11 256789999


Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeC
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA  154 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~  154 (261)
                      +.|.|.+.+.|.+ .+.|++++.... .....++..  ......|.|.++..+|+|.|+|.|.|..|..... .+.+.+.
T Consensus       230 v~l~C~~~g~p~~-~i~W~~~g~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~~l~V~  306 (395)
T 1bih_A          230 TMIYCMYGSNPMG-YPNYFKNGKDVN-GNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKH-SLKLTVV  306 (395)
T ss_dssp             EEEEEEEECSSCC-CCEEEETTEECC-CCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEE-EEEEEEE
T ss_pred             EEEEEEeccCCCC-eEEEEECCEEcC-CCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEE-EEEEEEE
Confidence            9999999998888 799999874221 111222222  1223379999999999999999999988875431 3334443


Q ss_pred             CCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-eeEEEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        155 GKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLVNLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       155 ~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .+|.   .|.. .+....|+.+.|.|.+  . +.|.....|+++..... ......   ...|.|.++..+|.|.|  +|
T Consensus       307 ~~P~~~~~~~~-~~~~~~g~~~~l~C~~--~-g~p~p~v~W~~~g~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y--~C  377 (395)
T 1bih_A          307 SAPKYEQKPEK-VIVVKQGQDVTIPCKV--T-GLPAPNVVWSHNAKPLSGGRATVT---DSGLVIKGVKNGDKGYY--GC  377 (395)
T ss_dssp             EEEEEEECCCS-EEEECTTSCEEEECEE--E-EESCCCCEEEETTEECCSSSEEEE---TTEEEESSCCSTTCEEE--EE
T ss_pred             cCCccccCCCc-ceEecCCCeEEEEEEE--C-cccCCeeEEEECCEECCCCceEEE---CCEEEEeeCCcccCEEE--EE
Confidence            4443   2322 2344569999999997  3 33433234444432221 112222   24899999999999999  99


Q ss_pred             EEEcCCCcCCceeeeee
Q psy11549        231 SGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~  247 (261)
                      .|.|..|....+..+.|
T Consensus       378 ~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          378 RATNEHGDKYFETLVQV  394 (395)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEccCCCceEEEEEEE
Confidence            99999998877766654

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.91  E-value=3.5e-23  Score=165.67  Aligned_cols=209  Identities=11%  Similarity=0.057  Sum_probs=130.5

Q ss_pred             CCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeEEEEcCCccccccC
Q psy11549         28 SRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVG  106 (261)
Q Consensus        28 ~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~  106 (261)
                      +..|+|.|+|.|.|..|...+..+.|.|..+|...  ... ..+.+|+.+.|.|.+.+. |.+ .+.|++++..... ..
T Consensus       199 ~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~--~~~-~~v~~G~~v~L~C~~~g~~p~p-~i~W~k~g~~l~~-~~  273 (423)
T 3qs7_E          199 HELFGTDIRCCARNELGRECTRLFTIDLNQTPQTT--LPQ-LFLKVGEPLWIRCKAVHVNHGF-GLTWELENKALEE-GN  273 (423)
T ss_dssp             CCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSS--TTE-EEEETTSCEEEEEEEEESSSCC-CEEEEESSSBCCG-GG
T ss_pred             ecccCeEEEEEEEcCCCCcceeeEEEEEecCCccC--CCc-eEEeCCCeEEEEEEEEcCCCCc-EEEEEECCEEccc-cc
Confidence            67999999999999999875555778887666542  223 668899999999999994 445 8999998753211 00


Q ss_pred             Cc---eEEe---CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC---CCCcceEEeecCCeEEEEe
Q psy11549        107 SE---RFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTSSVHISC  177 (261)
Q Consensus       107 ~~---~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c  177 (261)
                      ..   .+..   ......|.|.++..+|+|.|+|.|.|.   ...  .+.+.|..+|.   .|....+....|+.+.|.|
T Consensus       274 ~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~--~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C  348 (423)
T 3qs7_E          274 YFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQ--SALVTIVEKGFINATNSSEDYEIDQYEEFCFSV  348 (423)
T ss_dssp             EEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEE--EEEEEEESSCEEEEC---CEECCCTTCCCCEEE
T ss_pred             eeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCc--eEEEEEEeCCcceEcCCCccEEecCCCeEEEEE
Confidence            00   0000   111236999999999999999999987   333  44445545443   2222234445689999999


Q ss_pred             ecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEE--cCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeeccccc
Q psy11549        178 TPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTL--EDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGAHY  254 (261)
Q Consensus       178 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~~~  254 (261)
                      .+   .+.|..-+.|+++.......   .......+.+  ......|+|.|  +|.|.|.+|....+..+.+....+.+
T Consensus       349 ~~---~g~P~p~i~W~k~g~~l~~~---~~~~~~~~~~~~~~~~~~D~G~Y--tC~A~N~~G~~~~s~~L~v~~~p~~~  419 (423)
T 3qs7_E          349 RF---KAYPQIRCTWTFSRKSFPCE---QKGLDNGYSISKFCNHKHQPGEY--IFHAENDDAQFTKMFTLNIRSGTKHH  419 (423)
T ss_dssp             EE---EEESCCEEEEEETTEEEECB---CCBCSSSSEEEEECCCTTCCSCE--EEEEEETTEEEEEEEEEC--------
T ss_pred             EE---EEcCCCeEEEEECCEECCCc---cccccCCcEEEEEecccccCEEE--EEEEEcCCceEEEEEEEEEecCCccc
Confidence            97   34443333444443222100   0000112333  45557899999  99999999998888888776554443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=162.66  Aligned_cols=215  Identities=13%  Similarity=0.120  Sum_probs=125.5

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcc----eeeeEEEEEEeeceeecC-ceeEEEeeCCCcEEEEEEEeeCCCC-cee
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEA----TSNQLKLRVKYAPICKSD-RIVIVGASRSESVDIHCAVEADPPA-RSF   92 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~----~s~~~~l~V~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~-~~~   92 (261)
                      +.+|.|.+++.+|+|.|+|.+.|..+..    .+..+.|.|..+|..... ... ..+..|+.+.|.|.+.+.|++ ..+
T Consensus        73 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~-~~~~~g~~~~l~C~~~g~p~~~~~v  151 (327)
T 2wng_A           73 DFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPA-ARATPQHTVSFTCESHGFSPRDITL  151 (327)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCS-SCBCTTCEEEEEEEEEEEBSSCCEE
T ss_pred             eeEEEEccCccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccc-cccCCCCEEEEEEEEeCccCCCcEE
Confidence            4589999999999999999999986642    124567888765532110 111 346789999999999988765 389


Q ss_pred             EEEEcCCccccccCCceEEeCC------ceeEEEEecCCCCcCeEEEEEEEcCCceE---EeeEEEEEEeCCCCCCCCcc
Q psy11549         93 KWKFNNSGETLDVGSERFSSGS------RGSMLRYTPVTELDYGTLSCAAQNAIGTQ---VTPCLYQVVLAGKPQPPQNC  163 (261)
Q Consensus        93 ~W~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~---~~~~~~~v~~~~~p~~p~~~  163 (261)
                      .|++++..  +......+....      ..+.|.|.....+|.|.|+|.|.|..+..   .....+.+.+..+|.    +
T Consensus       152 ~W~k~g~~--l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~----i  225 (327)
T 2wng_A          152 KWFKNGNE--LSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPT----L  225 (327)
T ss_dssp             EEEETTEE--CCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCE----E
T ss_pred             EEEECCEE--ccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCE----E
Confidence            99998742  221111111111      12357777777778899999999987652   222122222233332    1


Q ss_pred             eEE---eecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE--EEecCCC------CcEEEcCCCCCCccEEEEEEE
Q psy11549        164 SVR---NETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV--NLTNLDT------PAFTLEDLGLDGTVLMRVVIS  231 (261)
Q Consensus       164 ~v~---~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~--~~~~~~~------~~~~i~~~~l~~~~~Y~~~~~  231 (261)
                      .+.   ...|+.+.|.|.+  .+..|.. .+.|+++........  .......      ..+.|..+..+|+|.|  +|.
T Consensus       226 ~~~~~~~~~G~~v~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y--~C~  301 (327)
T 2wng_A          226 EVTQQPVRAENQVNVTCQV--RKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKL--TCQ  301 (327)
T ss_dssp             EEEEECCSSTTCCEEEEEE--EEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEE--EEE
T ss_pred             EEecCCcCCCCcEEEEEEE--ccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEE--EEE
Confidence            111   2369999999997  4434432 334444433221110  1111111      2366777777899999  999


Q ss_pred             EEcCCCcCCceee
Q psy11549        232 GVNAKGRSLPVIW  244 (261)
Q Consensus       232 a~N~~G~~~~s~~  244 (261)
                      |.|..|......+
T Consensus       302 a~N~~~~~~s~~~  314 (327)
T 2wng_A          302 VEHDGQPAVSKSH  314 (327)
T ss_dssp             EEETTCCCEEEEE
T ss_pred             EEeCCCCCchhhe
Confidence            9999986543333

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.90  E-value=5.5e-23  Score=166.26  Aligned_cols=215  Identities=15%  Similarity=0.143  Sum_probs=138.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCc--eeEEEEcC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPAR--SFKWKFNN   98 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~~~W~~~~   98 (261)
                      +|.|.+++. |+| |+|.|.+..+.. +..+.|.|..+|...........+.+|+.+.|.|.+.+.+++.  .+.|++++
T Consensus        51 ~l~i~~v~~-d~g-Y~C~a~~~~~~~-~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g  127 (450)
T 1z7z_I           51 VYELSNVQE-DSQ-PMCYSNCPDGQS-TAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE  127 (450)
T ss_dssp             EEEEEEECS-CBC-CEEEEEETTEEE-EEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred             EEEEEeccc-CCe-eEEEEeCCCCcc-eeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCC
Confidence            799999987 999 999997654444 6678899988777653222224577999999999999988764  68999987


Q ss_pred             CccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE------eeEEEEEEeCCC-CCCCCc---ceEEee
Q psy11549         99 SGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV------TPCLYQVVLAGK-PQPPQN---CSVRNE  168 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~------~~~~~~v~~~~~-p~~p~~---~~v~~~  168 (261)
                      ..  +...  ..........|.|.++..+|+|.|+|.|.|..|...      .+....+.+... +.+|..   ..+  .
T Consensus       128 ~~--l~~~--~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v--~  201 (450)
T 1z7z_I          128 KE--LKRE--PAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVL--E  201 (450)
T ss_dssp             EE--EEEE--ECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEE--E
T ss_pred             EE--eecc--cccccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeE--E
Confidence            42  2111  111133345899999999999999999999865321      111223333333 334443   333  4


Q ss_pred             cCCeEEEEeecCCCCCCC--eEEEEEEEeCCccceeEEEecCCCCcEEEc---CCCCCCccEEEEEEEEEcCCCcCCcee
Q psy11549        169 TTSSVHISCTPGYDGGLP--QTFTLELYSASDLNLLVNLTNLDTPAFTLE---DLGLDGTVLMRVVISGVNAKGRSLPVI  243 (261)
Q Consensus       169 ~~~~~~l~c~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~l~~~~~Y~~~~~a~N~~G~~~~s~  243 (261)
                      .|+.+.|.|.+  .+..|  ..-..|++.............   ..+.+.   +++..|.|.|.|+|.|.|..|....+.
T Consensus       202 ~G~~v~l~C~~--~g~~P~~~~~~~W~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~  276 (450)
T 1z7z_I          202 VDTQGTVVCSL--DGLFPVSEAQVHLALGDQRLNPTVTYGN---DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ  276 (450)
T ss_dssp             TTSEEEEEEEE--ESCTTGGGCEEEEEETTEECCCEEEEET---TEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred             eCCcEEEEEEe--eCCCCCCceEEEEeCCCEeCCceEEecC---CceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEE
Confidence            69999999997  44434  233333343322211221111   122222   556889996666999999999887777


Q ss_pred             eeeeee
Q psy11549        244 WDDFSM  249 (261)
Q Consensus       244 ~~~~~~  249 (261)
                      .+.+..
T Consensus       277 ~l~V~~  282 (450)
T 1z7z_I          277 TVTIYS  282 (450)
T ss_dssp             EEEEEC
T ss_pred             EEEEec
Confidence            776654

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.90  E-value=4e-22  Score=156.85  Aligned_cols=202  Identities=12%  Similarity=0.056  Sum_probs=138.0

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcC
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNN   98 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~   98 (261)
                      +.+|.|.+++.+|+|.|+|.+.|..     ..+.|.|...+  ..+.   ..+.+|+.+.|.|.+.+.|.+ .+.|++++
T Consensus        66 ~~~L~I~~v~~~D~G~Y~C~~~n~~-----~~~~l~V~~~~--~~~~---~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~  134 (363)
T 1wio_A           66 NFPLIIKNLKIEDSDTYICEVEDQK-----EEVQLLVFGLT--ANSD---THLLQGQSLTLTLESPPGSSP-SVQCRSPR  134 (363)
T ss_dssp             CCCEEECSCCGGGCEEEEEEETTEE-----EEEEEEEEEEE--ESSC---SSEESBSCEEEEEECCTTCCC-CEEEECSS
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECC-----CcEEEEEEeCC--CCCc---eEEecCCCEEEEEEcCCCCCC-eEEEEcCC
Confidence            4579999999999999999998763     35677776532  1111   246799999999999887777 89999876


Q ss_pred             CccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEee
Q psy11549         99 SGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT  178 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~  178 (261)
                      ...         .  .....|.|.++..+|+|.|+|.+.+..+....  .+.+.+..+|..|..  +....|+.+.|.|.
T Consensus       135 ~~~---------~--~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~--~~~l~v~~~p~~~~~--~~~~~G~~v~l~C~  199 (363)
T 1wio_A          135 GKN---------I--QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEF--KIDIVVLAFQKASSI--VYKKEGEQVEFSFP  199 (363)
T ss_dssp             SCE---------E--EESSEEEECSBCGGGCEECEEEEEETTEEEEE--CCEECEECCSCSEEE--EEEETBCCEEEECC
T ss_pred             Ccc---------c--ccceEEEEeeCChhcCCEEEEEEecCCCeEEE--EEEEEEecCCCCCCc--eEEecCCEEEEEEE
Confidence            421         1  12347999999999999999999987655544  344555556655533  33356999999998


Q ss_pred             cCC-CCC-CCeEEEEEEEeCCccce----------eEEEe-----------cCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        179 PGY-DGG-LPQTFTLELYSASDLNL----------LVNLT-----------NLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       179 ~~~-~~~-~p~~~~~~~~~~~~~~~----------~~~~~-----------~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      +.. ..+ .|...+.|++.......          .....           ......|.|.++...|+|.|  +|.|.|.
T Consensus       200 ~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y--~C~a~n~  277 (363)
T 1wio_A          200 LAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG--NLTLALE  277 (363)
T ss_dssp             CCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEE--EEEECBT
T ss_pred             EecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEE--EEEEEEh
Confidence            621 112 45554444554332211          11110           11234899999888999999  9999999


Q ss_pred             --CCcCCceeeeeee
Q psy11549        236 --KGRSLPVIWDDFS  248 (261)
Q Consensus       236 --~G~~~~s~~~~~~  248 (261)
                        .|.......+.+.
T Consensus       278 ~~~g~~~~~~~l~V~  292 (363)
T 1wio_A          278 AKTGKLHQEVNLVVM  292 (363)
T ss_dssp             TTTCCEEEEEEEEEE
T ss_pred             hhcCeEEEEEeEEEE
Confidence              8866555555443

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.89  E-value=7.5e-22  Score=141.22  Aligned_cols=145  Identities=19%  Similarity=0.316  Sum_probs=110.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~   80 (261)
                      +|||.++..+..   ...+++|.|.+++.+|+|.|+|.+.|. +.. +..+.|.|..+|.+...... ..+..|+.+.|.
T Consensus        40 ~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~-~~~~~l~V~~~p~~~~~~~~-~~~~~g~~v~l~  113 (190)
T 2wv3_A           40 TKNGVELTATRK---NASNMEYRINKPRAEDSGEYHCVYHFV-SAP-KANATIEVKAAPDITGHKRS-ENKNEGQDAMMY  113 (190)
T ss_dssp             EETTEECTTCCB---CCSEEEEEESSCCGGGCEEEEEEEEET-TEE-EEEEEEEEECCCEEEEECSE-EEEETTSCEEEE
T ss_pred             EECCEECcccce---EeccEEEEEecCCcccCEEEEEEEEeC-Ccc-cccEEEEEecCCcccccCCc-ceeeCCCcEEEE
Confidence            478888864322   115578999999999999999999998 655 67889999998887755444 668899999999


Q ss_pred             EEEeeCCCCceeEEEEcCCcccccc--CCceEE--eCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         81 CAVEADPPARSFKWKFNNSGETLDV--GSERFS--SGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        81 C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~--~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      |.+.+.|.+ .+.|++++++..+..  ...++.  .......|.|.++. .+|+|.|+|.|.|..|.......+.|.
T Consensus       114 C~~~g~p~p-~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          114 CKSVGYPHP-EWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EEEECSSCC-EEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             EEeCccCCC-ceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            999998888 899999533333221  223332  23444579999999 799999999999999988876666554

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.89  E-value=2.3e-22  Score=151.44  Aligned_cols=209  Identities=15%  Similarity=0.123  Sum_probs=139.6

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccC---CCCCCEe--EEEEEEeCCCcceeeeEEEEEEeec--eeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKV---SRQSAGT--YKCSAINTKGEATSNQLKLRVKYAP--ICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~---~~~D~G~--Y~C~~~~~~~~~~s~~~~l~V~~~p--~~~~~~~~~~~~~~   73 (261)
                      +|||++|..    .....+..|.+..+   +.+|+|.  |+|.+.|..+.. +..+.|.|...|  .+...  . ..+.+
T Consensus        41 ~k~~~~l~~----~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~-~~~~~l~V~~~p~p~~~~~--~-~~v~~  112 (265)
T 2oz4_A           41 ALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVTIYSFPAPNVILT--K-PEVSE  112 (265)
T ss_dssp             EETTEECCC----EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEE-EEEEEEEEECCCCCEEEES--C-SEEET
T ss_pred             EeCCEECCc----eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCc-EEEEEEEEeCCCCceeecC--C-ceecC
Confidence            478888843    45556668888777   7888885  999999998876 667888887533  33322  1 34678


Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC-ceEE-eeEEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI-GTQV-TPCLYQV  151 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~-~~~~~~v  151 (261)
                      |+.+.|.|.+.  |.+ .+.|  ++.  .+..       .+....|.+..+..+|.|.|+|.|.|.. |... .+..+.+
T Consensus       113 G~~v~l~C~~~--p~~-~i~W--~g~--~~~~-------~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l  178 (265)
T 2oz4_A          113 GTEVTVKCEAH--PRA-KVTL--NGV--PAQP-------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL  178 (265)
T ss_dssp             TCEEEEEEECC--TTS-EEEE--SSC--SSSC-------CSSEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEE
T ss_pred             CCcEEEEEEcc--CCC-EEEE--CCE--EccC-------CCCcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEE
Confidence            99999999998  556 8999  543  2211       1233468899999999999999998543 5443 2234455


Q ss_pred             EeCCCCCC-----CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        152 VLAGKPQP-----PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       152 ~~~~~p~~-----p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      .+..+|..     |....+  ..|+.+.|.|.+   .+.|...+.|++.....      . .. ..+.  .++.+|+|.|
T Consensus       179 ~V~~~p~~~~~~~p~~~~v--~~g~~~~l~C~~---~g~P~p~i~W~~~~~~~------~-~~-g~~~--~v~~~d~G~Y  243 (265)
T 2oz4_A          179 RVLYGPRLDERDCPGNWTW--PENSQQTPMCQA---WGNPLPELKCLKDGTFP------L-PI-GESV--TVTRDLEGTY  243 (265)
T ss_dssp             EEEEEEECCGGGSCSEEEE--ETTCEECCCCCC---EEESCCEEEEEETTTEE------C-CT-TSCE--ECCGGGCEEE
T ss_pred             EEEeCCccccccCCCccEE--cCCCeEEEEeEC---ccCCCCeEEEEECCccc------C-CC-CcEE--EeehhhCeEE
Confidence            55555532     233333  569999999997   44454434455554411      1 11 2233  2558999999


Q ss_pred             EEEEEEEcCCCcCCceeeeeee
Q psy11549        227 RVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       227 ~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                        +|.|.|..|....+..+.+.
T Consensus       244 --~C~a~N~~G~~~~~~~l~V~  263 (265)
T 2oz4_A          244 --LCRARSTQGEVTREVTVNVL  263 (265)
T ss_dssp             --EEEEEETTEEEEEEEEEEEE
T ss_pred             --EEEEECCCCcEEEEEEEEEe
Confidence              99999999988777776664

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.89  E-value=2.5e-22  Score=158.01  Aligned_cols=198  Identities=11%  Similarity=0.085  Sum_probs=133.3

Q ss_pred             EEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEee-----CCCCc
Q psy11549         16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEA-----DPPAR   90 (261)
Q Consensus        16 ~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~   90 (261)
                      ...+.+|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|...|...    ....+.+|+.+.|.|.+.+     .|.+ 
T Consensus       138 ~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~-~~~~~l~v~~~p~~~----~~~~~~~G~~v~l~C~~~~~~~~~~P~p-  211 (363)
T 1wio_A          138 IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVLAFQKAS----SIVYKKEGEQVEFSFPLAFTVEKLTGSG-  211 (363)
T ss_dssp             EEESSEEEECSBCGGGCEECEEEEEETTEEE-EECCEECEECCSCSE----EEEEEETBCCEEEECCCCCCCCSSCEEE-
T ss_pred             cccceEEEEeeCChhcCCEEEEEEecCCCeE-EEEEEEEEecCCCCC----CceEEecCCEEEEEEEEecccccCCCce-
Confidence            4466799999999999999999999875544 555677776555422    2366789999999998877     5555 


Q ss_pred             eeEEEEcCCccccc-----cCCceEEe------------CCceeEEEEecCCCCcCeEEEEEEEcC--CceEEeeEEEEE
Q psy11549         91 SFKWKFNNSGETLD-----VGSERFSS------------GSRGSMLRYTPVTELDYGTLSCAAQNA--IGTQVTPCLYQV  151 (261)
Q Consensus        91 ~~~W~~~~~~~~~~-----~~~~~~~~------------~~~~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~~~~~v  151 (261)
                      .+.|++++......     ....++..            ......|.|.++..+|+|.|+|.|.|.  .|.......+.|
T Consensus       212 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V  291 (363)
T 1wio_A          212 ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVV  291 (363)
T ss_dssp             EEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEE
T ss_pred             eEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEE
Confidence            89999987532210     01222222            222447999999999999999999999  887666444443


Q ss_pred             EeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        152 VLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       152 ~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .              ...|..+.|.|.+  .+..++. ...|++.......        ...+.|.++..+|+|.|  +|
T Consensus       292 ~--------------~v~g~~~~l~C~~--~g~p~p~~~i~W~~~~~~~~~--------~~~l~i~~v~~~d~G~Y--~C  345 (363)
T 1wio_A          292 M--------------RATQLQKNLTCEV--WGPTSPKLMLSLKLENKEAKV--------SKREKAVWVLNPEAGMW--QC  345 (363)
T ss_dssp             E--------------EECCCSSSEEEEE--ESSCCTTCCEEEECSSSSCSE--------EESSSEEEESSCCSEEE--EE
T ss_pred             E--------------EecCCCeeEEEEE--ccccCCCccEEEEeCCCceee--------eeeeeeeeeccccceeE--EE
Confidence            3              1238889999997  3333333 1344444433211        23456778889999999  99


Q ss_pred             EEEcCCCcCCceeeee
Q psy11549        231 SGVNAKGRSLPVIWDD  246 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~  246 (261)
                      .|.|. |....+.-++
T Consensus       346 ~a~~~-~~~~~~~~~~  360 (363)
T 1wio_A          346 LLSDS-GQVLLESNIK  360 (363)
T ss_dssp             EECSS-SSCCEEEEEE
T ss_pred             EEecC-CeEEEecceE
Confidence            99865 4444444443

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.89  E-value=1.1e-21  Score=161.65  Aligned_cols=232  Identities=11%  Similarity=0.066  Sum_probs=139.0

Q ss_pred             CCCCeeccCCCCce--EEEEC------CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE----EeeceeecCceeE
Q psy11549          1 MAGGIPLAHNTSAR--IILSN------QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV----KYAPICKSDRIVI   68 (261)
Q Consensus         1 ~~ng~~l~~~~~~~--~~~~~------~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V----~~~p~~~~~~~~~   68 (261)
                      +|||++|..+....  ....+      ..|.|.+++.+|+|.|+|.|.|..+.. ...+.+.+    ..+|.+...... 
T Consensus       151 ~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~~~-  228 (523)
T 2rcj_C          151 KADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV-EKTVAPTECSASTKGPSVFPLAPS-  228 (523)
T ss_pred             ecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccc-ccceeeeecCCCCcCCEEEecCCC-
Confidence            58888885321111  01112      269999999999999999999988765 33344322    234544422222 


Q ss_pred             EEeeCCCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEEeCCc----eeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         69 VGASRSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFSSGSR----GSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      ..+..|+.+.|.|.+.+. |.|..+.|++++...... ........+.    .+.|.|.++..+| |.|+|.|.|..|..
T Consensus       229 ~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~  306 (523)
T 2rcj_C          229 SKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT  306 (523)
T ss_pred             cccccCCceEEEEEEeceeCCCeEEEEecCCcccceE-eCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc
Confidence            345789999999999887 556589999987531110 0111111111    3479999999999 99999999998875


Q ss_pred             EeeEEEEEEeCCCCC----CCCcceEEeecCCeEEEEeecCCCCCCCe---EEEEEEEeCCccceeE---EEecCC----
Q psy11549        144 VTPCLYQVVLAGKPQ----PPQNCSVRNETTSSVHISCTPGYDGGLPQ---TFTLELYSASDLNLLV---NLTNLD----  209 (261)
Q Consensus       144 ~~~~~~~v~~~~~p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~p~---~~~~~~~~~~~~~~~~---~~~~~~----  209 (261)
                      ...  ..+.+...|.    +|.... ....|+.+.|.|.+  .+..|.   .-+.|+++........   ......    
T Consensus       307 ~~~--~~l~v~~~P~~~~~~p~~~~-~v~~g~~~~l~C~~--~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~  381 (523)
T 2rcj_C          307 KVD--KRVEPLSLPSVFLFPPKPKD-TLMISRTPEVTCVV--VDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYR  381 (523)
T ss_pred             ceE--EecCCCcCceEEecCCCchh-hcccCCceEEEEEE--ecccCCCCceEEEEEECCeEccCCccCCceecCCCcEE
Confidence            543  3333333332    222221 02349999999997  333332   2334444432221000   000111    


Q ss_pred             -CCcEEEcCCCCCCccEEEEEEEEEcCCCcCCcee
Q psy11549        210 -TPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVI  243 (261)
Q Consensus       210 -~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~  243 (261)
                       ...|.|.++..+|+|.|  +|.|.|..|....+.
T Consensus       382 ~~s~L~i~~~~~~d~G~Y--~C~a~n~~~~~~~~~  414 (523)
T 2rcj_C          382 VVSVLTVLHQNWLDGKEY--KCKVSNKALPAPIEK  414 (523)
T ss_pred             EEEEEEECHHHhcCCCeE--EEEEeCCCCCCceeE
Confidence             13477877778899999  999999988665443

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.88  E-value=2.3e-21  Score=159.68  Aligned_cols=216  Identities=14%  Similarity=0.152  Sum_probs=134.6

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcc--eeeeEEEEEE----eeceeecCceeEEEeeCCCcEEEEEEEeeCCCC-ceeE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEA--TSNQLKLRVK----YAPICKSDRIVIVGASRSESVDIHCAVEADPPA-RSFK   93 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~--~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~   93 (261)
                      +|.|.+++.+|+|.|+|.|.|..|..  ....+.|.|.    .+|.+...... ..+..|+.+.|.|.+.+.+++ ..+.
T Consensus        71 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~  149 (523)
T 2rcj_C           71 SLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPS-SEELQANKATLVCLISDFYPGAVTVA  149 (523)
T ss_pred             EEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCc-ccccCCCceEEEEEeccccCCceEEE
Confidence            79999999999999999999986532  2345678873    45554433322 345679999999999988764 4899


Q ss_pred             EEEcCCccccccCCceE--Ee-CCc----eeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcc---
Q psy11549         94 WKFNNSGETLDVGSERF--SS-GSR----GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNC---  163 (261)
Q Consensus        94 W~~~~~~~~~~~~~~~~--~~-~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~---  163 (261)
                      |++++..  +.......  .. .+.    .+.|.|.++..+|+|.|+|.|.|..+.......+.+ +...+.+|...   
T Consensus       150 W~k~g~~--l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~-~~~~~~~P~v~~~~  226 (523)
T 2rcj_C          150 WKADGSP--VKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTE-CSASTKGPSVFPLA  226 (523)
T ss_pred             EecCCCC--CCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeee-cCCCCcCCEEEecC
Confidence            9998743  21111100  00 111    236999999999999999999998776554322211 11112222111   


Q ss_pred             -eEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccce-eE-EEecCC-----CCcEEEcCCCCCCccEEEEEEEEEc
Q psy11549        164 -SVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNL-LV-NLTNLD-----TPAFTLEDLGLDGTVLMRVVISGVN  234 (261)
Q Consensus       164 -~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~-~~-~~~~~~-----~~~~~i~~~~l~~~~~Y~~~~~a~N  234 (261)
                       ......|+.+.|.|.+  .+..|.. -+.|+++...... .. ......     ...|.|.++...+ |.|  +|.|.|
T Consensus       227 ~~~~~~~G~~~~l~C~~--~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y--~C~a~n  301 (523)
T 2rcj_C          227 PSSKSTSGGTAALGCLV--KDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY--ICNVNH  301 (523)
T ss_pred             CCcccccCCceEEEEEE--eceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceE--EEEEEe
Confidence             1112469999999997  4443433 2333444322111 11 111111     1378999988889 999  999999


Q ss_pred             CCCcCCceeee
Q psy11549        235 AKGRSLPVIWD  245 (261)
Q Consensus       235 ~~G~~~~s~~~  245 (261)
                      ..|.......+
T Consensus       302 ~~g~~~~~~~l  312 (523)
T 2rcj_C          302 KPSNTKVDKRV  312 (523)
T ss_pred             CCCCcceEEec
Confidence            99976554443

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.88  E-value=9.5e-21  Score=136.17  Aligned_cols=148  Identities=20%  Similarity=0.224  Sum_probs=111.6

Q ss_pred             CCCCeeccCCCCceEEE--ECC--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCce----eEEEee
Q psy11549          1 MAGGIPLAHNTSARIIL--SNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRI----VIVGAS   72 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~--~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~----~~~~~~   72 (261)
                      +|||+++..+..+....  .++  +|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|..+|.+..+..    ....+.
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~  117 (197)
T 2j8h_A           39 YRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHAL  117 (197)
T ss_dssp             EETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEEETTEEE-EEEEEEEEEEEEEECCSSCBTTBEEEEEE
T ss_pred             EECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEEECCCce-eEEEEEEEcCCCcCCCCccccccCeEEEe
Confidence            57888887544434332  233  89999999999999999999998876 6788999998887654331    336688


Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEec-CCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTP-VTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      .|+.+.|.|.+.+.|.+ .+.|++++.... ......+........|.|.+ +..+|+|.|+|.|.|..|.......+.|
T Consensus       118 ~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  195 (197)
T 2j8h_A          118 RGEVVSIKIPFSGKPDP-VITWQKGQDLID-NNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV  195 (197)
T ss_dssp             TTCCCEEEEEEEEESCC-EEEEEESSCEEC-SSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEecCCC-cEEEEECCEEee-cCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEE
Confidence            99999999999998888 899999874221 12222333344566899999 9999999999999999998766444433

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.88  E-value=4.3e-21  Score=137.27  Aligned_cols=148  Identities=20%  Similarity=0.298  Sum_probs=111.1

Q ss_pred             CC-CCeeccCCCCceEEEE----CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCC
Q psy11549          1 MA-GGIPLAHNTSARIILS----NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSE   75 (261)
Q Consensus         1 ~~-ng~~l~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~   75 (261)
                      +| ||+++.....+.....    +++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+.. ..+..|+
T Consensus        38 ~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~  116 (191)
T 1epf_A           38 FSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTP-QEFKEGE  116 (191)
T ss_dssp             ECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSS-EECCTTS
T ss_pred             EeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCc-EeecCCC
Confidence            35 8888875544444432    3589999999999999999999998655577888999888887655544 6678999


Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      .+.|.|.+.+.|.+ .+.|++++..... ....++..... ..|.|.++..+|+|.|+|.|.|..+.......+.+.
T Consensus       117 ~~~l~C~~~g~p~~-~v~W~~~~~~~~~-~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~  190 (191)
T 1epf_A          117 DAVIVCDVVSSLPP-TIIWKHKGRDVIL-KKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI  190 (191)
T ss_dssp             CEEECCEEECSSCC-EEEEEETTEEGGG-GCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred             eEEEEEEECCCCCC-EEEEEECCEEeec-cCCceEEEecC-CeEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence            99999999998888 7999998753222 22333333322 269999999999999999999988655554455443

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.88  E-value=3.7e-21  Score=137.71  Aligned_cols=149  Identities=25%  Similarity=0.311  Sum_probs=111.4

Q ss_pred             CCCCeeccCCCCceEEEEC-CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549          1 MAGGIPLAHNTSARIILSN-QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~-~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      +|||.++.....+.....+ .+|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+...... ..+..|+.+.|
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~~g~~~~l  120 (192)
T 2iep_A           42 TRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPIN-VKIIEGLKAVL  120 (192)
T ss_dssp             EETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCC-EEEETTSCEEE
T ss_pred             EECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcc-eEEeCCCcEEE
Confidence            4788888755555554443 479999999999999999999988876566788999988887765544 67889999999


Q ss_pred             EEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCC
Q psy11549         80 HCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK  156 (261)
Q Consensus        80 ~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~  156 (261)
                      .|.+.+.|.+ .+.|++++.  .+.. ..++..... ..|.|.++..+|+|.|+|.|.|..|..... .+.+.|..+
T Consensus       121 ~C~~~g~p~~-~v~W~~~~~--~~~~-~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~-~~~l~V~~p  191 (192)
T 2iep_A          121 PCTTMGNPKP-SVSWIKGDS--ALRE-NSRIAVLES-GSLRIHNVQKEDAGQYRCVAKNSLGTAYSK-LVKLEVEVF  191 (192)
T ss_dssp             CCEEEEESCC-EEEEEETTE--ECCC-CSSEEECTT-SCEEESSCCGGGCEEEEEEEEETTEEEECC-CEEEEEEC-
T ss_pred             EEEEeccCCc-eEEEEeCCE--EccC-CCcEEEecC-CcEEEecCChhhCEEEEEEEEcCCCcEEEE-EEEEEEEeC
Confidence            9999998888 899999874  2222 222322222 269999999999999999999998877432 334444333

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.87  E-value=7.3e-21  Score=138.33  Aligned_cols=148  Identities=15%  Similarity=0.238  Sum_probs=106.1

Q ss_pred             CCCCeeccCCCCceEEEECC--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe--------------------e
Q psy11549          1 MAGGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY--------------------A   58 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~--------------------~   58 (261)
                      +|||++|..+++......++  +|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..                    .
T Consensus        38 ~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~  116 (212)
T 2r15_A           38 SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR  116 (212)
T ss_dssp             EETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcce-EEEEEEEEeeccchhhhccccCcccccccCC
Confidence            57899987654433334443  49999999999999999999987765 4556665542                    2


Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCC-ceEEeC-CceeEEEEecCCCCcCeEEEEEE
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ERFSSG-SRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      |.+.........+..|+.+.|.|.+.+.|.| .+.|++++..  +.... ..+... +....|.|.++..+|+|.|+|.|
T Consensus       117 p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~v~W~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  193 (212)
T 2r15_A          117 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEKA--LAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVV  193 (212)
T ss_dssp             CEEEEBCCSEEEEETTCCEEEEEEEECSSCC-EEEEEETTEE--ECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CcccccCCCcEEEccCCeEEEEEEEcCCCCc-eEEEEECCeE--CccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEE
Confidence            2233222223678899999999999999888 7999998742  22222 222222 44568999999999999999999


Q ss_pred             EcCCceEEeeEEEEEE
Q psy11549        137 QNAIGTQVTPCLYQVV  152 (261)
Q Consensus       137 ~~~~~~~~~~~~~~v~  152 (261)
                      .|..|.......+.|.
T Consensus       194 ~N~~g~~~~~~~l~V~  209 (212)
T 2r15_A          194 KNKYGSETSDFTVSVF  209 (212)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EcCCCcEEEEEEEEEE
Confidence            9999987775555443

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.87  E-value=1.1e-20  Score=135.46  Aligned_cols=146  Identities=20%  Similarity=0.232  Sum_probs=108.7

Q ss_pred             CCCCeeccCCC--CceEEEECC--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE---eeceeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHNT--SARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK---YAPICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~~--~~~~~~~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~---~~p~~~~~~~~~~~~~~   73 (261)
                      +|||+++....  .......++  +|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|.   .+|.+...... ..+..
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~v~~~~~~p~~~~~~~~-~~~~~  117 (194)
T 2a38_A           40 FRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQA-TSTAELLVKAETAPPNFVQRLQS-MTVRQ  117 (194)
T ss_dssp             EESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCEEEEEEECCCC-EEECT
T ss_pred             EECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEEcCCceE-eEEEEEEEccCCCCCEEEeCCcc-EEEcC
Confidence            47888886443  334444444  89999999999999999999988776 556788887   56665544443 67889


Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      |+.+.|.|.+.+.|.+ .+.|++++.... ......+...+....|.|.++..+|.|.|+|.|.|..|.......+.
T Consensus       118 g~~~~l~C~~~g~p~~-~v~W~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  192 (194)
T 2a38_A          118 GSQVRLQVRVTGIPTP-VVKFYRDGAEIQ-SSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL  192 (194)
T ss_dssp             TEEEEEEEEEEEESCC-EEEEEETTEECC-CSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEecCC-eEEEEECCEECC-CCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEE
Confidence            9999999999998888 799999874221 11222233344455799999999999999999999999877644443

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.1e-20  Score=134.91  Aligned_cols=149  Identities=17%  Similarity=0.308  Sum_probs=109.7

Q ss_pred             CCCCeeccC-CCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCc-ceeeeEEEEEEeeceeecCcee-EEEeeCCCcE
Q psy11549          1 MAGGIPLAH-NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKYAPICKSDRIV-IVGASRSESV   77 (261)
Q Consensus         1 ~~ng~~l~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~-~~s~~~~l~V~~~p~~~~~~~~-~~~~~~g~~~   77 (261)
                      +|||.++.. ...+.....+++|.|.+++.+|+|.|+|.+.+..+. .....+.|.|..+|.+...... ...+..|+.+
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v  116 (189)
T 2v5t_A           37 LYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM  116 (189)
T ss_dssp             EC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCE
T ss_pred             EECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcE
Confidence            467777753 345566667789999999999999999999988744 3345678888888877654432 3567789999


Q ss_pred             EEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549         78 DIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus        78 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      .|.|.+.+.|.+ .+.|++++..  +.. ..++........|.|.++..+|+|.|+|.|.|..|.......+.|.+
T Consensus       117 ~l~C~~~g~p~~-~v~W~~~g~~--~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          117 TFSCRASGSPEP-AISWFRNGKL--IEE-NEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV  188 (189)
T ss_dssp             EEECEEEEESCC-EEEEEETTEE--CCC-SSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEccCCCC-eEEEEECCEE--CcC-CCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence            999999998888 8999998742  222 22334444445799999999999999999999999888766666654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.87  E-value=1.1e-20  Score=137.60  Aligned_cols=151  Identities=21%  Similarity=0.336  Sum_probs=109.8

Q ss_pred             CCCCeeccCCCCceEEEE--C--CeEEEccCCC-CCCEeEEEEEEeCCCcceeeeEEEEEEee-------ceeecCceeE
Q psy11549          1 MAGGIPLAHNTSARIILS--N--QSLVLQKVSR-QSAGTYKCSAINTKGEATSNQLKLRVKYA-------PICKSDRIVI   68 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~--~--~~L~i~~~~~-~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~-------p~~~~~~~~~   68 (261)
                      +|||+++.....+.....  +  .+|.|.+++. +|+|.|+|.+.|..|...+..+.|.|...       |.+...+.. 
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~-  119 (212)
T 2yd1_A           41 RKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGT-  119 (212)
T ss_dssp             EETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCC-
T ss_pred             EECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCc-
Confidence            478888874444444432  3  3899999999 99999999999998884477888999865       454443333 


Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +.....++.....  .|.|.++..+|+|.|+|.|.|..|..... .
T Consensus       120 ~~~~~g~~v~l~C~~~g~p~p-~i~W~~~~~~--~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~-~  193 (212)
T 2yd1_A          120 RVIEVGHTVLMTCKAIGNPTP-NIYWIKNQTK--VDMSNPRYSLKDG--FLQIENSREEDQGKYECVAENSMGTEHSK-A  193 (212)
T ss_dssp             EEEETTCCEEECCEEECSSCC-EEEEEETTEE--CCTTSTTEEEETT--EEEECSCCGGGCEEEEEEEEETTEEEECC-C
T ss_pred             eEeecCCeEEEEEEeccCCCC-eEEEEECCeE--cccCCCeEEccCC--eEEEccCChhhCEEEEEEeecCCCceeEE-E
Confidence            567889999999999999888 8999998742  3222333333333  79999999999999999999999987653 2


Q ss_pred             EEEEeCCCCC
Q psy11549        149 YQVVLAGKPQ  158 (261)
Q Consensus       149 ~~v~~~~~p~  158 (261)
                      +.+.|...+.
T Consensus       194 ~~l~V~~~~~  203 (212)
T 2yd1_A          194 TNLYVKVRRV  203 (212)
T ss_dssp             EEEEEEC---
T ss_pred             EEEEEEeccc
Confidence            3344434443

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.87  E-value=1.2e-20  Score=136.56  Aligned_cols=140  Identities=14%  Similarity=0.192  Sum_probs=100.5

Q ss_pred             CCCCeeccCCCCceEEEEC--C--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE--------------------
Q psy11549          1 MAGGIPLAHNTSARIILSN--Q--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK--------------------   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~--~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~--------------------   56 (261)
                      ||||++|..+....+...+  +  +|.|.+++.+|+|.|+|.|.|  |.. ...+.+.+.                    
T Consensus        38 ~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (207)
T 3rbs_A           38 IFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKA-TNHSTVVLVGDVFKKLQKEAEFQRQEWIR  114 (207)
T ss_dssp             EETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTE-EEEEEEEECTHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCe-EEEEEEEEEccchhhhccccccccccccc
Confidence            5899999765544444433  2  699999999999999999999  443 233333221                    


Q ss_pred             -eeceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEE
Q psy11549         57 -YAPICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        57 -~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                       .+|.+.... . ..+.+|+.+.|.|.+.+. |.| .+.|++++..  +.. ..++........|.|.++..+|+|.|+|
T Consensus       115 ~~~P~~~~~~-~-~~v~~g~~v~l~C~v~g~~P~p-~i~W~k~g~~--l~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  188 (207)
T 3rbs_A          115 KQGPHFVEYL-S-WEVTGECNVLLKCKVANIKKET-HIVWYKDERE--ISV-DEKHDFKDGICTLLITEFSKKDAGIYEV  188 (207)
T ss_dssp             HTSSEEEEEE-E-EEEETTTEEEEEEEEESCCTTC-EEEEEETTEE--ECC-CCCCCCSSEEEEEEETTCCGGGCEEEEE
T ss_pred             CCCCceEecC-C-cEEcCCCcEEEEEEEeCCCCCC-EEEEEECCEE--CCC-CCceEcCCCEEEEEECCCCcccCEEEEE
Confidence             134443332 2 567899999999999998 677 8999998742  222 2233344445579999999999999999


Q ss_pred             EEEcCCceEEeeEEE
Q psy11549        135 AAQNAIGTQVTPCLY  149 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~  149 (261)
                      .|.|..|.......+
T Consensus       189 ~a~N~~G~~~~~~~L  203 (207)
T 3rbs_A          189 ILKDDRGKDKSRLKL  203 (207)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             EEEcCCCEEEEEEEE
Confidence            999999988775443

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.87  E-value=2.6e-22  Score=161.71  Aligned_cols=213  Identities=13%  Similarity=0.158  Sum_probs=125.2

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCC--CCceeEEEEc
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADP--PARSFKWKFN   97 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~   97 (261)
                      ++|.|.+++.+|+|.|+|.|.|..+.. .....+.+...+.....+. ...+..|+.+.|.|.+.+.|  .+ .+.|+++
T Consensus       181 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~~~~~-~~~v~~G~~v~L~C~~~g~p~~~~-~v~W~k~  257 (438)
T 1qgc_4          181 STLTLTKDEYERHNSYTCEATHKTSTS-PIVKSFNRNECEVMLVESG-GGLVKPGGSLKLSCTASGFIFNRC-AMSWVRQ  257 (438)
T ss_dssp             EEEEEEHHHHHTCCEEEEEEEETTCSS-CEEEEEETTC-CCEEEEEC-CEEECTTCCEEEEEEEESSCGGGS-CEEEEEE
T ss_pred             EEEEEeCcccCCCCeEEEEEEecccCC-ceecccccccceeEEecCC-ceEEecCCcEEEEEEEcccccCCc-EEEEEEC
Confidence            479999999999999999999987764 2222222111111111112 25688999999999999888  34 8999986


Q ss_pred             CCccccc----------------cCCceEEe----CCceeEEEEecCCCCcCeEEEEEEEcCCc-----eEEeeEEEEEE
Q psy11549         98 NSGETLD----------------VGSERFSS----GSRGSMLRYTPVTELDYGTLSCAAQNAIG-----TQVTPCLYQVV  152 (261)
Q Consensus        98 ~~~~~~~----------------~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-----~~~~~~~~~v~  152 (261)
                      ..+....                ....++..    ......|.|.++..+|+|.|+|.|.|..+     .......+.|.
T Consensus       258 ~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~  337 (438)
T 1qgc_4          258 TPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVS  337 (438)
T ss_dssp             ETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEEC
T ss_pred             CCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEe
Confidence            2111111                01122322    12355899999999999999999998433     11122233333


Q ss_pred             eCCCCCCCCcceE----EeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccce-eE-EEecCC----CCcEEEcCCCCC
Q psy11549        153 LAGKPQPPQNCSV----RNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNL-LV-NLTNLD----TPAFTLEDLGLD  221 (261)
Q Consensus       153 ~~~~p~~p~~~~v----~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~-~~-~~~~~~----~~~~~i~~~~l~  221 (261)
                      . .++.+|.....    ....|+.++|.|.+  .+..|.. .+.|+++...... .. ......    ...|.|.++...
T Consensus       338 ~-~~~~~P~v~~~~~~~~~~~g~~v~L~C~~--~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~  414 (438)
T 1qgc_4          338 A-AKTTPPSVYPLAPGSAAAAASMVTLGCLV--KGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWP  414 (438)
T ss_dssp             S-SCCBCCEEEEECCCGGGCCSSEEEEEEEE--ESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHH
T ss_pred             c-CCCCCCeEEEcCcccccccCCcEEEEEEe--ccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcC
Confidence            2 22223321111    12358999999997  4443533 3334444322211 11 111111    124778885555


Q ss_pred             CccEEEEEEEEEcCCCcCCc
Q psy11549        222 GTVLMRVVISGVNAKGRSLP  241 (261)
Q Consensus       222 ~~~~Y~~~~~a~N~~G~~~~  241 (261)
                      + |.|  +|.|.|.+|....
T Consensus       415 d-g~Y--~C~a~n~~g~~~~  431 (438)
T 1qgc_4          415 S-ETV--TCNVAHPASSTKV  431 (438)
T ss_dssp             H-SCC--EEEEEEGGGTEEE
T ss_pred             C-ceE--EEEEEeCCCCcce
Confidence            7 999  9999999996543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.86  E-value=1e-23  Score=181.11  Aligned_cols=218  Identities=16%  Similarity=0.200  Sum_probs=0.0

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      .+|.|.++  +|+|.|+|.|.|..|.. +..+.|.|..+|.+...+.  ..+.+|+.+.|.|.+.+.|.+ .+.|++++.
T Consensus       515 ~~L~i~~~--~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~i~~~p~--~~~~~G~~v~l~C~~~~~p~~-~v~W~k~~~  588 (772)
T 3v2a_R          515 STLVIQAA--NVSALYKCEAVNKVGRG-ERVISFHVTRGPEITLQPD--MQPTEQESVSLWCTADRSTFE-NLTWYKLGP  588 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEeec--ccCeEEEEEEEcccccc-ceeEEEEEECCceeeccCC--cccccCCceEEEEeccCCCCC-CcEEEEcCC
Confidence            47888877  79999999999999876 6678888888776654332  346789999999999998877 899998764


Q ss_pred             ccccccCCceE--------------------EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe--eEEEEEEeCCCC
Q psy11549        100 GETLDVGSERF--------------------SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT--PCLYQVVLAGKP  157 (261)
Q Consensus       100 ~~~~~~~~~~~--------------------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~~~v~~~~~p  157 (261)
                      .... ......                    ........|.|.++..+|+|.|+|.|.|..+....  ...+.+.+..+|
T Consensus       589 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P  667 (772)
T 3v2a_R          589 QPLP-IHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAP  667 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccc-cccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCC
Confidence            2111 000000                    01112335999999999999999999996554432  224444434444


Q ss_pred             C---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        158 Q---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       158 ~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      .   .+.+..+  ..|+.+.|.|.+  . +.|..-+.|+++........ .........|.|.++..+|+|.|  +|.|.
T Consensus       668 ~~~~~~~~~~v--~~g~~~~l~C~~--~-g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~  740 (772)
T 3v2a_R          668 TITGNLENQTT--SIGESIEVSCTA--S-GNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLY--TCQAC  740 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeecCCCceEE--eCCCCEEEEEEe--C-ccCCCeEEEEECCeECcCCCCeEEcCCCcEEEECcCCHHHCEEE--EEEEE
Confidence            3   2223233  459999999997  3 44444334444433221111 11122347899999999999999  99999


Q ss_pred             cCCCcCCceeeeeeeecc
Q psy11549        234 NAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       234 N~~G~~~~s~~~~~~~~~  251 (261)
                      |.+|....+..+.|..++
T Consensus       741 N~~G~~~~~~~l~V~~~p  758 (772)
T 3v2a_R          741 SVLGCAKVEAFFIIEGAQ  758 (772)
T ss_dssp             ------------------
T ss_pred             eCCcceeEEEEEEEECCC
Confidence            999999888888876543

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.86  E-value=3.8e-21  Score=155.50  Aligned_cols=211  Identities=14%  Similarity=0.113  Sum_probs=129.8

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEc---cCCCCCCE--eEEEEEEeCCCcceeeeEEEEEEe--eceeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQ---KVSRQSAG--TYKCSAINTKGEATSNQLKLRVKY--APICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~---~~~~~D~G--~Y~C~~~~~~~~~~s~~~~l~V~~--~p~~~~~~~~~~~~~~   73 (261)
                      +|||+++..    .....+..+.+.   +++.+|+|  .|+|.|.|..+.. +..+.|.|..  +|.+....   ..+.+
T Consensus       226 ~~~~~~~~~----~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~-~~~~~l~V~~~~~p~i~~~~---~~v~~  297 (450)
T 1z7z_I          226 ALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVTIYSFPAPNVILTK---PEVSE  297 (450)
T ss_dssp             EETTEECCC----EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEE-EEEEEEEEECCCCCEEEESC---SEEET
T ss_pred             eCCCEeCCc----eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccE-EEEEEEEEecCCCCeEecCC---eeEeC
Confidence            367777743    233334444433   77999999  9999999998876 5577888886  44443221   35789


Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc-eEE-eeEEEEE
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG-TQV-TPCLYQV  151 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~-~~~~~~v  151 (261)
                      |+.++|.|.+.  |.+ .+.|  ++.  .+..       .+....|.|..+..+|+|.|+|.|.|..+ ... ....+.+
T Consensus       298 G~~v~l~C~~~--p~p-~i~W--~g~--~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l  363 (450)
T 1z7z_I          298 GTEVTVKCEAH--PRA-KVTL--NGV--PAQP-------LGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL  363 (450)
T ss_dssp             TCEEEEEEEC------------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CCcEEEEEecC--CCC-EeEE--CCE--EcCC-------CCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEE
Confidence            99999999998  555 7999  442  2211       12234799999999999999999997554 322 2224445


Q ss_pred             EeCCCCCCCCc---ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEE
Q psy11549        152 VLAGKPQPPQN---CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       152 ~~~~~p~~p~~---~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      .+..+|.....   ..+....|+.+.|.|.+   .+.|...+.|+++....      . .....+   .++.+|+|.|  
T Consensus       364 ~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~---~g~P~p~i~W~~~g~~~------~-~~g~~~---~v~~~d~G~Y--  428 (450)
T 1z7z_I          364 RVLYGPRLDERDCPGNWTWPENSQQTPMCQA---WGNPLPELKCLKDGTFP------L-PIGESV---TVTRDLEGTY--  428 (450)
T ss_dssp             EEEEEEECCSTTSCSEEEEETTCEECCCCCC---EEESCCEEEEEETTTEE------C-CTTSCE---ECCGGGCEEE--
T ss_pred             EEecCCceeeccCCCceeEcCCCeEEEEEec---ccCCCCcEEEEECCccc------C-CCCCeE---eEehhhCeEE--
Confidence            55444432111   23344569999999997   44454434455554311      1 112333   4567999999  


Q ss_pred             EEEEEcCCCcCCceeeeeee
Q psy11549        229 VISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~~~  248 (261)
                      +|.|.|.+|....+..+.|.
T Consensus       429 ~C~a~N~~G~~~~~~~l~V~  448 (450)
T 1z7z_I          429 LCRARSTQGEVTREVTVNVL  448 (450)
T ss_dssp             EEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEeCCCceeEEEEEEEE
Confidence            99999999988877777664

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.86  E-value=1.8e-20  Score=150.98  Aligned_cols=205  Identities=17%  Similarity=0.146  Sum_probs=125.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe---eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY---APICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFKWKF   96 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~   96 (261)
                      +|.|.+++.+|+|.|+|.|.|..+......+.|.|..   +|.+...... .....|+.+.|.|.+.+. |.+..+.|++
T Consensus        76 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k  154 (438)
T 1qgc_4           76 TLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKI  154 (438)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             EEEeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCC-hhhccCCceEEEEEEccccCCCcEEEEEE
Confidence            7999999999999999999998775434556777753   3443321111 112358899999999884 4444899999


Q ss_pred             cCCccccccC-C--ceEEeCC-----ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC---CCCcceE
Q psy11549         97 NNSGETLDVG-S--ERFSSGS-----RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSV  165 (261)
Q Consensus        97 ~~~~~~~~~~-~--~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~---~p~~~~v  165 (261)
                      ++..  +... .  .......     ..+.|.|.++..+|+|.|+|.|.|..+....  ...+....++.   .|..  +
T Consensus       155 ~g~~--~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~--~~~~~~~~~~~~~~~~~~--~  228 (438)
T 1qgc_4          155 DGSE--RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI--VKSFNRNECEVMLVESGG--G  228 (438)
T ss_dssp             TTEE--ECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCE--EEEEETTC-CCEEEEECC--E
T ss_pred             CCEE--cCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCce--ecccccccceeEEecCCc--e
Confidence            7742  2111 0  0011111     1347999999999999999999998765422  22233211111   1222  2


Q ss_pred             EeecCCeEEEEeecCCCCCC--CeEEEEEEEeC-Cccc--------------------eeEEEec---CCCCcEEEcCCC
Q psy11549        166 RNETTSSVHISCTPGYDGGL--PQTFTLELYSA-SDLN--------------------LLVNLTN---LDTPAFTLEDLG  219 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~--p~~~~~~~~~~-~~~~--------------------~~~~~~~---~~~~~~~i~~~~  219 (261)
                      ....|+.++|.|.+  .+..  +..+. |++.. +...                    ..+....   .....|.|.+++
T Consensus       229 ~v~~G~~v~L~C~~--~g~p~~~~~v~-W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~  305 (438)
T 1qgc_4          229 LVKPGGSLKLSCTA--SGFIFNRCAMS-WVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLR  305 (438)
T ss_dssp             EECTTCCEEEEEEE--ESSCGGGSCEE-EEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             EEecCCcEEEEEEE--cccccCCcEEE-EEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCC
Confidence            33569999999997  3322  12343 44431 2111                    0111111   112479999999


Q ss_pred             CCCccEEEEEEEEEcCCC
Q psy11549        220 LDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       220 l~~~~~Y~~~~~a~N~~G  237 (261)
                      .+|.|.|  +|.|.|..|
T Consensus       306 ~~D~G~Y--~C~a~n~~~  321 (438)
T 1qgc_4          306 SADTAMY--YCVRREDGG  321 (438)
T ss_dssp             GGGCCEE--EEEECCSSS
T ss_pred             hhhCEEE--EEEEEccCC
Confidence            9999999  999999554

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.86  E-value=3.9e-20  Score=140.56  Aligned_cols=147  Identities=20%  Similarity=0.350  Sum_probs=112.4

Q ss_pred             CCCCeeccCCCCceEEEEC--CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEE
Q psy11549          1 MAGGIPLAHNTSARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVD   78 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~--~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~   78 (261)
                      +|||.++...........+  ..|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|..+|.+...+.. ..+..|+.+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~-~~~~~g~~v~  211 (284)
T 2rik_A          134 YKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKPHP-VETLKGADVH  211 (284)
T ss_dssp             EETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCBCCSCCCC-EEECTTCCEE
T ss_pred             EECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCce-eEEEEEEEecCCcceeCCCc-ceecCCCeEE
Confidence            4788888654432333332  479999999999999999999998876 67789999998887765544 6678999999


Q ss_pred             EEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         79 IHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        79 l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      |.|.+.+.|.+ .+.|++++.... ......+...+....|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus       212 l~C~~~g~p~~-~v~W~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  282 (284)
T 2rik_A          212 LECELQGTPPF-QVSWHKDKRELR-SGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL  282 (284)
T ss_dssp             EEEECBSSSCC-EEEEEETTEEEC-BTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEecCCC-EEEEEECCEECc-CCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEE
Confidence            99999998887 899999874211 112222333444568999999999999999999999998877544443

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.86  E-value=3.3e-20  Score=133.19  Aligned_cols=142  Identities=15%  Similarity=0.232  Sum_probs=105.6

Q ss_pred             CCCCeeccCCCCceEEEE-----------CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEE
Q psy11549          1 MAGGIPLAHNTSARIILS-----------NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIV   69 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~-----------~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~   69 (261)
                      +|||++|......+....           +++|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..+|.+...+.. .
T Consensus        38 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~-~  116 (195)
T 2c5d_C           38 LRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPED-R  116 (195)
T ss_dssp             EETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCC-E
T ss_pred             EECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCc-E
Confidence            478888864422122211           3589999999999999999999988776566689999998887665544 6


Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE-eeEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV-TPCL  148 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~  148 (261)
                      .+..|+.+.|.|.+.+.|.|..+.|++++..  +......    .....|.|.++.  |+|.|+|.|.|..|... ....
T Consensus       117 ~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~--~~~~~~~----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~  188 (195)
T 2c5d_C          117 TVAANTPFNLSCQAQGPPEPVDLLWLQDAVP--LATAPGH----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTAT  188 (195)
T ss_dssp             EECTTCCEEEEEEEECSSCCCEEEEEESSCB--SSSSTTS----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEE
T ss_pred             EEcCCCEEEEEeECCCCCCCCEEEEEECCEe--ccCCCCc----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEE
Confidence            7889999999999999887757999998753  2211111    234478999887  78999999999998775 4444


Q ss_pred             EEE
Q psy11549        149 YQV  151 (261)
Q Consensus       149 ~~v  151 (261)
                      +.|
T Consensus       189 l~V  191 (195)
T 2c5d_C          189 ITV  191 (195)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.86  E-value=9e-21  Score=162.91  Aligned_cols=235  Identities=15%  Similarity=0.069  Sum_probs=94.7

Q ss_pred             CeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee--ceeecCceeEEEeeCCCcEEEEE
Q psy11549          4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA--PICKSDRIVIVGASRSESVDIHC   81 (261)
Q Consensus         4 g~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~--p~~~~~~~~~~~~~~g~~~~l~C   81 (261)
                      |..+..+...........|.|.+++.+|+|.|+|.+.+......+..+.+.+...  +.+...+.....+..|+.++|.|
T Consensus       167 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C  246 (772)
T 3v2a_R          167 EKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC  246 (772)
T ss_dssp             TEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEE
T ss_pred             CccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEE
Confidence            4455433333344455789999999999999999998765444343344544422  22222111125688999999999


Q ss_pred             EEeeCC-CCceeEEEEcCCccccccCCc-eE------EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549         82 AVEADP-PARSFKWKFNNSGETLDVGSE-RF------SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus        82 ~~~~~~-~~~~~~W~~~~~~~~~~~~~~-~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      .+.+.+ +...+.|++++.......... ..      ......+.|.|.++..+|+|.|+|.+.+..+....  .+.+.+
T Consensus       247 ~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~--~~~l~V  324 (772)
T 3v2a_R          247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN--STFVRV  324 (772)
T ss_dssp             EEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEE--EEEEEE
T ss_pred             EEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeE--EEEEEE
Confidence            999853 233899998774311100000 00      11123457999999999999999999998876655  444555


Q ss_pred             CCCCCCCCc----ceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEE
Q psy11549        154 AGKPQPPQN----CSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       154 ~~~p~~p~~----~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      ..+|.....    ..+....|+.+.|.|.+  . +.| ..+. |+++..........  .....|.|.++...++|.|  
T Consensus       325 ~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~--~-~~p~~~v~-W~~~g~~l~~~~~~--~~~~~L~i~~v~~~d~G~Y--  396 (772)
T 3v2a_R          325 HEKPFVAFGSGMESLVEATVGERVRIPAKY--L-GYPPPEIK-WYKNGIPLESNHTI--KAGHVLTIMEVSERDTGNY--  396 (772)
T ss_dssp             ECCCC---------------------------------------------------------------------------
T ss_pred             eCCCeeEeccCCCCcEEEcCCCcEEEEEEE--e-eeCCCeEE-EEECCEeCCCCceE--ccceeEEEecCChhcCceE--
Confidence            455542211    12233569999999997  3 344 3344 44443332211111  1347889999899999999  


Q ss_pred             EEEEEcCCCcCCceeeeeee
Q psy11549        229 VISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~~~  248 (261)
                      +|.|.|..|....+..+.+.
T Consensus       397 ~C~a~n~~g~~~~s~~~~l~  416 (772)
T 3v2a_R          397 TVILTNPISKEKQSHVVSLV  416 (772)
T ss_dssp             --------------------
T ss_pred             EEEEEECCcCeEEEEEEEEE
Confidence            99999999977655544433

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.85  E-value=1.3e-19  Score=130.11  Aligned_cols=147  Identities=16%  Similarity=0.181  Sum_probs=109.0

Q ss_pred             CCCCeeccCCCCceEEEECC---eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecC--ceeEEEeeCCC
Q psy11549          1 MAGGIPLAHNTSARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSD--RIVIVGASRSE   75 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~--~~~~~~~~~g~   75 (261)
                      +|||.++..+.. .....++   +|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..+|.....  ......+..|+
T Consensus        42 ~~~~~~~~~~~~-~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~  119 (197)
T 3lcy_A           42 YRFGKELIQSRK-YKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEV-ETSSKLLLQATPQFHPGYPLKEKYYGAVGS  119 (197)
T ss_dssp             EETTEEECCCSS-EEEEESSSEEEEEEECCSGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEECTTSCCCSEEEEETTS
T ss_pred             EECCEECCCCcc-EEEEeCCCEEEEEEecCCccCCEEEEEEEECCCCce-eEEEEEEEEcCCCCCCCccCCcceeecCCC
Confidence            478888865433 4444444   89999999999999999999988876 56788889888776532  12235678999


Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCC-CcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTE-LDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      .+.|.|.+.+.|.+ .+.|++++.... ......+........|.|.++.. +|+|.|+|.|.|..|.......+.|
T Consensus       120 ~~~l~C~~~~~p~p-~v~W~~~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  194 (197)
T 3lcy_A          120 TLRLHVMYIGRPVP-AMTWFHGQKLLQ-NSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEI  194 (197)
T ss_dssp             CEEEEEEEEEESCC-EEEEEETTEECC-CCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eEEEEEEEeeeeCC-eeEEeECCEECC-CCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEE
Confidence            99999999999888 899999774211 11222233344446899999985 8999999999999998877444433

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.85  E-value=7.9e-20  Score=132.98  Aligned_cols=149  Identities=21%  Similarity=0.301  Sum_probs=105.2

Q ss_pred             CCCCeeccCCCCceEEEE---CCeEEEccC-CCCCCEeEEEEEEeCCCcceeeeEEEEEEee-------ceeecCceeEE
Q psy11549          1 MAGGIPLAHNTSARIILS---NQSLVLQKV-SRQSAGTYKCSAINTKGEATSNQLKLRVKYA-------PICKSDRIVIV   69 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~---~~~L~i~~~-~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~-------p~~~~~~~~~~   69 (261)
                      +|||.++...........   +..|.|.++ +.+|+|.|+|.+.|..|.. +..+.|.|...       |.+...+.. .
T Consensus        41 ~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~p~~~~~~~~-~  118 (212)
T 2yd6_A           41 NKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQL-K  118 (212)
T ss_dssp             EETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEEEETTEEE-EEEEEEEEECGGGCCTTCCEEEECCCC-E
T ss_pred             EECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEEEcCCCcE-EEEEEEEEeccCccCCCcceeecCCcc-e
Confidence            478888864332222222   236999999 5999999999999998875 66788888764       344433333 5


Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe-e
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT-P  146 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~  146 (261)
                      .+..|+.+.|.|.+.+.|.+ .+.|++++..........++.  .......|.|.++..+|+|.|+|.|.|..|.... .
T Consensus       119 ~~~~g~~v~l~C~~~g~p~p-~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~  197 (212)
T 2yd6_A          119 VVERTRTATMLCAASGNPDP-EITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAP  197 (212)
T ss_dssp             EEETTSCEEEEEEEECSSCC-EEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCC
T ss_pred             eEecCCCEEEEEEecCCCCC-eEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCcccccc
Confidence            67889999999999999888 899999874322111112222  2234568999999999999999999999998765 3


Q ss_pred             EEEEEE
Q psy11549        147 CLYQVV  152 (261)
Q Consensus       147 ~~~~v~  152 (261)
                      +.+.+.
T Consensus       198 a~l~~~  203 (212)
T 2yd6_A          198 ANLYVR  203 (212)
T ss_dssp             EEEEEE
T ss_pred             ccEEEE
Confidence            344444

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.85  E-value=3.6e-20  Score=131.46  Aligned_cols=134  Identities=20%  Similarity=0.271  Sum_probs=103.2

Q ss_pred             CCCCeeccCCCCceEEEEC----CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCc
Q psy11549          1 MAGGIPLAHNTSARIILSN----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSES   76 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~   76 (261)
                      +|||.++...........+    ++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...... ..+..|+.
T Consensus        37 ~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~  115 (182)
T 1rhf_A           37 VKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKD-LAVPPNAP  115 (182)
T ss_dssp             EETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCC-EEECTTCC
T ss_pred             EECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcc-eEecCCCE
Confidence            4788888654333333333    589999999999999999999987765567899999999987765554 67889999


Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +.|.|.+.+.|.|..+.|++++..  +...  ..    ....|.|.++  +|+|.|+|.|.|..|....
T Consensus       116 ~~l~C~~~g~p~p~~v~W~~~~~~--~~~~--~~----~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s  174 (182)
T 1rhf_A          116 FQLSCEAVGPPEPVTIVWWRGTTK--IGGP--AP----SPSVLNVTGV--TQSTMFSCEAHNLKGLASS  174 (182)
T ss_dssp             EEEEEEEECSSSCCEEEEEETTEE--CSCS--EE----SSEEEEECCC--SSCEEEEEEEEETTEEEEC
T ss_pred             EEEEeEecCCCCCCEEEEEcCCeE--CCCC--CC----CceEEEEecc--ccCeEEEEEEECCCCCccc
Confidence            999999999887768999998742  2111  10    3447888887  5899999999999887753

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.85  E-value=3.7e-20  Score=134.85  Aligned_cols=152  Identities=16%  Similarity=0.120  Sum_probs=98.6

Q ss_pred             CCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe--eceeecCceeEEEeeCCCcEEEE
Q psy11549          3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY--APICKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~--~p~~~~~~~~~~~~~~g~~~~l~   80 (261)
                      ||..+... .+.....++.|.|.+++.+|+|.|+|.|.|..+...+..+.|.|..  +|.+.......+.+..|++++|.
T Consensus        48 ~g~~~~~~-~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~  126 (213)
T 2x1w_L           48 EKRFVPDG-NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLN  126 (213)
T ss_dssp             TEEECCCS-SSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEE
T ss_pred             CCccccCC-CcccccCCccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEE
Confidence            57776533 3344445678999999999999999999886555445457777753  33333222222578899999999


Q ss_pred             EEEeeCCC-CceeEEEEcCCccccccC-CceEEe------CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         81 CAVEADPP-ARSFKWKFNNSGETLDVG-SERFSS------GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        81 C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      |.+.+.|. +..+.|++++........ ......      ....+.|.|.++..+|+|.|+|.|.|..|.....  +.+.
T Consensus       127 C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~--~~l~  204 (213)
T 2x1w_L          127 CTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS--TFVR  204 (213)
T ss_dssp             EEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEE--EEEE
T ss_pred             EEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEE--EEEE
Confidence            99998654 337999988753111100 001000      1123479999999999999999999999887664  4444


Q ss_pred             eCCCC
Q psy11549        153 LAGKP  157 (261)
Q Consensus       153 ~~~~p  157 (261)
                      |..+|
T Consensus       205 V~~~p  209 (213)
T 2x1w_L          205 VHEDP  209 (213)
T ss_dssp             EEC--
T ss_pred             Eeccc
Confidence            44444

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.85  E-value=1.2e-20  Score=136.00  Aligned_cols=122  Identities=15%  Similarity=0.134  Sum_probs=92.6

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCc
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSG  100 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~  100 (261)
                      +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.+...+.. ..+.+|+.+.|.|.+.+.|.| .+.|++++..
T Consensus        70 ~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~~-~~v~~g~~~~l~C~~~G~P~P-~v~W~~~~~~  146 (203)
T 4fa8_A           70 FLVVTAANISHDGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSER-SQFPDFSVLTVTCTVNAFPHP-HVQWLMPEGV  146 (203)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEEEEEE-CCSSCSCCEEEEEEEEEESCC-EEEECCC---
T ss_pred             EEEEccCCHHHCeEEEEEEEcCCCcE-EEEEEEEecCCceeeeccee-EEEcCCCEEEEEEEcCCCCCC-EEEEEECCee
Confidence            79999999999999999999998887 66789999888876654443 667899999999999999988 8999886543


Q ss_pred             cccc-cCCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549        101 ETLD-VGSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus       101 ~~~~-~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ...+ ....++..  ++....+.+.++..+|+|.|+|.|.|..|....
T Consensus       147 ~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~  194 (203)
T 4fa8_A          147 EPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG  194 (203)
T ss_dssp             ---------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred             ecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence            2221 12233333  333345667799999999999999999998765

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.85  E-value=3.8e-19  Score=151.94  Aligned_cols=222  Identities=13%  Similarity=0.108  Sum_probs=152.7

Q ss_pred             eEEEccCCC-CCCEeEEEEEEeCCCcceeeeEEEEEE---eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeE-EE
Q psy11549         21 SLVLQKVSR-QSAGTYKCSAINTKGEATSNQLKLRVK---YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFK-WK   95 (261)
Q Consensus        21 ~L~i~~~~~-~D~G~Y~C~~~~~~~~~~s~~~~l~V~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~-W~   95 (261)
                      .+.|..+.. +..+.|.|.+.+..|......+.+.+.   .+|.+..+. . +.+..|+.+.|.|.+.+.|.| .+. |+
T Consensus       124 ~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~~~~-~-~~v~~G~~v~l~C~~~g~P~p-~i~~W~  200 (731)
T 2v5y_A          124 ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQ-N-VEVNAGQFATFQCSAIGRTVA-GDRLWL  200 (731)
T ss_dssp             EEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEECCCC-C-EEEETTSCEEEEEEEESCCCT-TCEEEE
T ss_pred             EEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccccccccc-c-eEEeCCCcEEEEEEeCCCCCC-ceeEEE
Confidence            466665523 335889998888777653333333332   345555332 3 778899999999999999988 566 87


Q ss_pred             EcCCccccccCCce-EEeCCceeEEEEecCCCCcCeEEEEEEEcCCce-EEeeEEEEEEeCCCCCCCCcceEEeecCCeE
Q psy11549         96 FNNSGETLDVGSER-FSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT-QVTPCLYQVVLAGKPQPPQNCSVRNETTSSV  173 (261)
Q Consensus        96 ~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~  173 (261)
                      +..++..+...... +........|.|.++...|.|.|+|.|.|..|. ....  ..+.+..+|.+|....+.......+
T Consensus       201 ~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~--~~l~V~~~P~~~~~p~~~~~~~~~v  278 (731)
T 2v5y_A          201 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNY--AELVVKEPPVPIAPPQLASVGATYL  278 (731)
T ss_dssp             EESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCC--EEEEEECCCCBSSCCEEEEECSSCE
T ss_pred             ecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceee--EEEEEecCCCCCCCcceeccCCceE
Confidence            32222222211111 111122458999999999999999999999987 4443  3455557777777666766778999


Q ss_pred             EEEeecCC-CCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE--cCCCcCCceeeeeeee
Q psy11549        174 HISCTPGY-DGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV--NAKGRSLPVIWDDFSM  249 (261)
Q Consensus       174 ~l~c~~~~-~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~--N~~G~~~~s~~~~~~~  249 (261)
                      .|.|.++. .++.|+ .|.+.|+......  ..........+.|.+  |.+++.|+|+|.|.  |..|.+.+|..+.+.+
T Consensus       279 ~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t  354 (731)
T 2v5y_A          279 WIQLNANSINGDGPIVAREVEYCTASGSW--NDRQPVDSTSYKIGH--LDPDTEYEISVLLTRPGEGGTGSPGPALRTRT  354 (731)
T ss_dssp             EEECCCSSBSSCSCCCEEEEEEEESSSSC--EEEEECCSSEEEECS--CCTTCEEEEEEEEECSSTTCSCCBCCCEEEEC
T ss_pred             EEEeCCcccCCCCccEEEEEEEEECCCCc--eEEeccCcceEEEeC--CCCCCEEEEEEEEEecCCCccccCCCcEEeee
Confidence            99999643 344554 5888888754332  123334458899999  99999999999999  9999999998877765


Q ss_pred             cc
Q psy11549        250 SG  251 (261)
Q Consensus       250 ~~  251 (261)
                      ..
T Consensus       355 ~~  356 (731)
T 2v5y_A          355 KC  356 (731)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.85  E-value=1.1e-19  Score=138.44  Aligned_cols=149  Identities=22%  Similarity=0.355  Sum_probs=113.6

Q ss_pred             CCCCeeccCC-CCceEEEECCeEEEccCCCCCCEeEEEEEEeCC-CcceeeeEEEEEEeeceeecCc-eeEEEeeCCCcE
Q psy11549          1 MAGGIPLAHN-TSARIILSNQSLVLQKVSRQSAGTYKCSAINTK-GEATSNQLKLRVKYAPICKSDR-IVIVGASRSESV   77 (261)
Q Consensus         1 ~~ng~~l~~~-~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~-~~~~s~~~~l~V~~~p~~~~~~-~~~~~~~~g~~~   77 (261)
                      +|||.++... ..+.....+++|.|.+++.+|+|.|+|.+.|.. +...+..+.|.|..+|.+.... .....+..|+.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v  214 (291)
T 1qz1_A          135 KHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSV  214 (291)
T ss_dssp             EETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCE
T ss_pred             EECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceE
Confidence            4678887543 345566677899999999999999999999875 4444567888888888776443 223568899999


Q ss_pred             EEEEEEeeCCCCceeEEEEcCCccccccCC---ceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         78 DIHCAVEADPPARSFKWKFNNSGETLDVGS---ERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        78 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      .|.|.+.+.|.| .+.|++++..  +....   .++........|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus       215 ~l~C~~~g~p~p-~i~W~~~g~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  289 (291)
T 1qz1_A          215 TLVCDADGFPEP-TMSWTKDGEP--IENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF  289 (291)
T ss_dssp             EEEEEEEEESCC-EEEEEETTEE--CCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCC-cEEEEECCEE--CcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEE
Confidence            999999998888 8999998742  22221   245555555689999999999999999999999987775555443

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.84  E-value=8.9e-20  Score=135.23  Aligned_cols=155  Identities=23%  Similarity=0.331  Sum_probs=104.9

Q ss_pred             CCCCeeccCCCC---ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee----ceeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHNTS---ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA----PICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~----p~~~~~~~~~~~~~~   73 (261)
                      +|||+++.....   ......+.+|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|...    |...........+..
T Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~  128 (241)
T 3grw_A           50 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDVLERSPHRPILQAGLPANQTAVL  128 (241)
T ss_dssp             EETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCCEEEECTTCSEECCT
T ss_pred             EECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCce-EEEEEEEEeccCCCCceeecCCCccceecC
Confidence            478888864322   2334455699999999999999999999988776 56678888752    222222222256788


Q ss_pred             CCcEEEEEEEeeCCCCceeEEEE----cCCccccccCCce-EE--------eCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         74 SESVDIHCAVEADPPARSFKWKF----NNSGETLDVGSER-FS--------SGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~----~~~~~~~~~~~~~-~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      |+.+.|.|.+.+.|.+ .+.|++    ++..  +...... ..        .......|.|.++..+|+|.|+|.|.|..
T Consensus       129 g~~v~L~C~~~~~p~p-~v~W~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~  205 (241)
T 3grw_A          129 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGSK--VGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFI  205 (241)
T ss_dssp             TCCEEEEEEEECSSCC-EEEEEEECCSSSCS--SCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCEEEEEEEEecCCCC-EEEEEEcccCCCcc--cCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCc
Confidence            9999999999999888 899998    5432  2111111 11        11234579999999999999999999999


Q ss_pred             ceEEeeEEEEEEeCCCCCCCC
Q psy11549        141 GTQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus       141 ~~~~~~~~~~v~~~~~p~~p~  161 (261)
                      |....  .+.+.|..+|.+|.
T Consensus       206 g~~~~--~~~l~V~~~p~~~~  224 (241)
T 3grw_A          206 GVAEK--AFWLSVHGPRAAEE  224 (241)
T ss_dssp             CEEEE--EEEEEC--------
T ss_pred             ceEEE--EEEEEecCCCCCCc
Confidence            88866  56666767776554

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.84  E-value=2.6e-20  Score=135.49  Aligned_cols=129  Identities=18%  Similarity=0.311  Sum_probs=97.4

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEE-eeCCCCceeEEEEc
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAV-EADPPARSFKWKFN   97 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~   97 (261)
                      +.+|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..+|........ ..+..|+.+.|.|.+ .+.|.+ .+.|+++
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~-~~~~~g~~v~l~C~~~~g~p~~-~v~W~~~  159 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVD-GSEEIGNDFKLKCEPKEGSLPL-QFEWQKL  159 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEEE-SCCBTTCCEEEEEECSBCCSSC-EEEEEEC
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeeee-cceecCCcEEEEecCCCCCCCC-EEEEEEC
Confidence            4689999999999999999999988766 67789999887765433322 346789999999999 677777 8999996


Q ss_pred             CCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCC
Q psy11549         98 NSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG  155 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~  155 (261)
                      +....+... ...  ......|.|.++..+|+|.|+|.|.|..|....  .+.+.|..
T Consensus       160 ~~~~~~~~~-~~~--~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~--~~~l~V~~  212 (214)
T 3jz7_A          160 SDSQTMPTP-WLA--EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQC--MLRLDVVP  212 (214)
T ss_dssp             STTCCCCGG-GGG--GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEE--EEEECCBC
T ss_pred             CCCCccCcc-cee--ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEE--EEEEEEeC
Confidence            543332211 111  112237999999999999999999999988866  45555543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.84  E-value=2.5e-20  Score=134.69  Aligned_cols=138  Identities=12%  Similarity=0.156  Sum_probs=95.8

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~   80 (261)
                      ||||++|...        .++|.|.+++.+|+|.|+|.+.|..   .+..+.|.|..+|.+.....  ..+.+|+.+.|.
T Consensus        43 ~k~g~~l~~~--------~~~L~i~~v~~~D~G~Y~C~a~n~~---~s~~~~l~V~~~p~~~~~~~--~~v~~G~~v~L~  109 (204)
T 3sgj_C           43 FHNESLISSQ--------ASSYFIDAATVDDSGEYRCQTQLST---LSDPVQLEVHIGWLLLQAPR--WVFKEEDPIHLR  109 (204)
T ss_dssp             EETTEEESCC--------SSEEEESSCCGGGCEEEEEEETTSB---CCCCEEEEEECSSEEEECSC--SEEETTCCEEEE
T ss_pred             EECCEEcccC--------ccEEEEecccccCCEEEEEEeCCCc---ccccEEEEEecCceEecCCc--eeEeCCCcEEEE
Confidence            3566666432        2789999999999999999998742   24567888887776554433  456789999999


Q ss_pred             EEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCC
Q psy11549         81 CAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP  160 (261)
Q Consensus        81 C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p  160 (261)
                      |.+.+.++...+.|++++.....         ......|.|.++..+|+|.|+|.|.|..+.. .+..+.+.|..+|..|
T Consensus       110 C~~~~~~p~~~v~W~k~g~~~~~---------~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~-~s~~~~l~V~~~~~~P  179 (204)
T 3sgj_C          110 CHSWKNTALHKVTYLQNGKGRKY---------FHHNSDFYIPKATLKDSGSYFCRGLVGSKNV-SSETVQITITQGLAVS  179 (204)
T ss_dssp             EEEGGGCCCEEEEEEETTEEEEE---------EEECCCEEESSCCGGGCEEEEEEEEETTEEE-ECCCEEEEEEC-----
T ss_pred             EEecCCCCCceEEEEECCcEeec---------ccCCceEEECcCCcccCEEEEEEEEeCCCce-ecCcEEEEEeCcCCCC
Confidence            99977766448999998742111         1123369999999999999999999954432 3335666666666665


Q ss_pred             C
Q psy11549        161 Q  161 (261)
Q Consensus       161 ~  161 (261)
                      .
T Consensus       180 ~  180 (204)
T 3sgj_C          180 T  180 (204)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.84  E-value=8.3e-20  Score=139.19  Aligned_cols=152  Identities=14%  Similarity=0.205  Sum_probs=109.8

Q ss_pred             CCCeeccCCCCceEEEECCeEEEccCCCCCCE-eEEEEEEeCCCcceeeeEEEEEE----eeceeecCceeEEEeeCCCc
Q psy11549          2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAG-TYKCSAINTKGEATSNQLKLRVK----YAPICKSDRIVIVGASRSES   76 (261)
Q Consensus         2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G-~Y~C~~~~~~~~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~   76 (261)
                      +||++|.. ..+.....++.|.|.+++.+|+| .|+|.|.|..+...+..+.|.|.    .+|.+...... ..+..|+.
T Consensus       128 ~~g~~l~~-~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~-~~v~~G~~  205 (290)
T 2o26_X          128 CDGKSLPT-DLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETS-HLLKKGDT  205 (290)
T ss_dssp             TTSCCCCT-TCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSB-CCCCTTCC
T ss_pred             CCCcCCCC-CCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCc-ceEecCCc
Confidence            68888864 34445555689999999999999 99999999866654556888887    66777554444 47889999


Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCcc---ccccCCceEE---eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGE---TLDVGSERFS---SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~---~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      +.|.|.+.+.|.|..+.|++++...   ........+.   .......|.|.++..+|+|.|+|.|.|..|....  .+.
T Consensus       206 v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~--~~~  283 (290)
T 2o26_X          206 FTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANV--TTT  283 (290)
T ss_dssp             EEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEE--EEE
T ss_pred             EEEEEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEE--EEE
Confidence            9999999999888559999987531   0111111111   1123458999999999999999999999998866  455


Q ss_pred             EEeCCCC
Q psy11549        151 VVLAGKP  157 (261)
Q Consensus       151 v~~~~~p  157 (261)
                      |.|..+|
T Consensus       284 l~V~~~P  290 (290)
T 2o26_X          284 LKVVEKG  290 (290)
T ss_dssp             ECC----
T ss_pred             EEEEeCC
Confidence            5555443

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.84  E-value=1.3e-19  Score=133.35  Aligned_cols=155  Identities=22%  Similarity=0.321  Sum_probs=107.0

Q ss_pred             CCCCeeccCCCC---ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee----ceeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHNTS---ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA----PICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~~~---~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~----p~~~~~~~~~~~~~~   73 (261)
                      +|||+++.....   ......+.+|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|...    |...........+..
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~  132 (231)
T 3ojm_B           54 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDVVERSRHRPILQAGLPANASTVV  132 (231)
T ss_dssp             EETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCCEECTTCSCCEEEET
T ss_pred             EECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcc-cccEEEEEEcCCCCCCceeeccCCceEEEe
Confidence            478888864322   1333445689999999999999999999988776 56778888753    333322222367889


Q ss_pred             CCcEEEEEEEeeCCCCceeEEEE----cCCccccccCCce-EE-------eCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         74 SESVDIHCAVEADPPARSFKWKF----NNSGETLDVGSER-FS-------SGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~----~~~~~~~~~~~~~-~~-------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      |+.+.|.|.+.+.|.+ .+.|++    ++.  .+...... ..       .......|.|.++..+|+|.|+|.|.|..|
T Consensus       133 g~~~~l~C~~~~~p~p-~v~W~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g  209 (231)
T 3ojm_B          133 GGDVEFVCKVYSDAQP-HIQWIKHVEKNGS--KYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG  209 (231)
T ss_dssp             TCCEEEECCEECSSCC-EEEEEEECCBTTB--SBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCcEEEEEEEecCCCC-EEEEEECCCCCCc--cccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccc
Confidence            9999999999998888 899998    442  12111111 10       112234699999999999999999999998


Q ss_pred             eEEeeEEEEEEeCCCCCCCC
Q psy11549        142 TQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus       142 ~~~~~~~~~v~~~~~p~~p~  161 (261)
                      ....  .+.+.+..+|.+|.
T Consensus       210 ~~~~--~~~l~V~~~p~~p~  227 (231)
T 3ojm_B          210 QANQ--SAWLTVLPKQQAPG  227 (231)
T ss_dssp             EEEE--EEEEEEECCC----
T ss_pred             eEee--EEEEEEecCCCCCc
Confidence            8766  45566667777664

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.84  E-value=6.1e-20  Score=131.35  Aligned_cols=179  Identities=21%  Similarity=0.313  Sum_probs=117.9

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      .+|.+...... +.+..|+.+.|.|.+.+.|.+ .+.|++++.  .+.....++........|.|.++..+|+|.|+|.+
T Consensus         6 ~~P~i~~~~~~-~~~~~G~~v~l~C~~~~~p~~-~i~W~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (192)
T 2iep_A            6 KAPVITTPLET-VDALVEEVATFMCAVESYPQP-EISWTRNKI--LIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTA   81 (192)
T ss_dssp             EEEEESSCCCE-EEEETTSCEEEECCEEEESCC-EEEEEETTE--ECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEE
T ss_pred             CCceeecCccc-eeeeCCCcEEEEeeCCCCCCC-eEEEEECCE--EccccCccEEEcCCccEEEEcCCCcccCeEEEEEE
Confidence            45666655544 778899999999999998887 899999774  23233344444444457999999999999999999


Q ss_pred             EcCCceE-EeeEEEEEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCc
Q psy11549        137 QNAIGTQ-VTPCLYQVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPA  212 (261)
Q Consensus       137 ~~~~~~~-~~~~~~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (261)
                      .+..+.. .....+.+.  .+|.   .|....+  ..|..+.|.|.+  .+..+..+. |++..................
T Consensus        82 ~~~~~~~~~~~~~l~v~--~~p~~~~~~~~~~~--~~g~~~~l~C~~--~g~p~~~v~-W~~~~~~~~~~~~~~~~~~~~  154 (192)
T 2iep_A           82 NNGVGGAVESCGALQVK--MKPKITRPPINVKI--IEGLKAVLPCTT--MGNPKPSVS-WIKGDSALRENSRIAVLESGS  154 (192)
T ss_dssp             ECSSSCCEEEEEEEEEE--EEEEEEECCCCEEE--ETTSCEEECCEE--EEESCCEEE-EEETTEECCCCSSEEECTTSC
T ss_pred             EcCCCceeEeEEEEEEE--eCCccccCCcceEE--eCCCcEEEEEEE--eccCCceEE-EEeCCEEccCCCcEEEecCCc
Confidence            9987763 333334333  3332   3333333  469999999997  333333444 444432221111112223468


Q ss_pred             EEEcCCCCCCccEEEEEEEEEcCCCcCC-ceeeeeee
Q psy11549        213 FTLEDLGLDGTVLMRVVISGVNAKGRSL-PVIWDDFS  248 (261)
Q Consensus       213 ~~i~~~~l~~~~~Y~~~~~a~N~~G~~~-~s~~~~~~  248 (261)
                      +.|.+++..|.|.|  +|.|.|..|... .+..+.+.
T Consensus       155 L~i~~~~~~d~G~Y--~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          155 LRIHNVQKEDAGQY--RCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             EEESSCCGGGCEEE--EEEEEETTEEEECCCEEEEEE
T ss_pred             EEEecCChhhCEEE--EEEEEcCCCcEEEEEEEEEEE
Confidence            99999999999999  999999999763 34444444

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.83  E-value=4.3e-20  Score=134.17  Aligned_cols=139  Identities=22%  Similarity=0.403  Sum_probs=101.7

Q ss_pred             eEEEECCeEEEccCCCCCCEeEEEEEEeCCCc-ceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEE-EeeCCCCce
Q psy11549         14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCA-VEADPPARS   91 (261)
Q Consensus        14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~-~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~~   91 (261)
                      +....+++|.|.+++.+|+|.|+|.+.+..|. ..+..+.|.|..+|........ ..+..|+.+.|.|. +.+.|.+ .
T Consensus        59 r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~-~  136 (212)
T 1f97_A           59 RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVP-SSVTIGNRAVLTCSEHDGSPPS-E  136 (212)
T ss_dssp             TEEEETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECC-SEEETTSCEEEEEECSCCBSCC-E
T ss_pred             cEEeeceeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCc-cccCCCCeEEEEEEcccCcCCC-E
Confidence            45556689999999999999999999998763 2356788888887765433222 45779999999999 6777777 8


Q ss_pred             eEEEEcCC-ccccccC------CceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeC
Q psy11549         92 FKWKFNNS-GETLDVG------SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA  154 (261)
Q Consensus        92 ~~W~~~~~-~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~  154 (261)
                      +.|++++. .......      ...+........|.|.++..+|.|.|+|.|.|..|....+..+.+.+.
T Consensus       137 i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          137 YSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             EEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             EEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence            99999874 3221111      123344444567999999999999999999999988744435555543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.83  E-value=3.8e-19  Score=127.74  Aligned_cols=181  Identities=15%  Similarity=0.135  Sum_probs=118.8

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE---eCCceeEEEEecCCCCcCeEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS---SGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +|.+...+.. ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +.....++.   ..+....|.|.++..+|+|.|+|
T Consensus         4 ~P~~~~~~~~-~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (197)
T 2j8h_A            4 APHFKEELRN-LNVRYQSNATLVCKVTGHPKP-IVKWYRQGKE--IIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV   79 (197)
T ss_dssp             CCEEEECCCC-EEEETTSCEEEEEEEECSSCC-EEEEEETTEE--CCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEE
T ss_pred             CCEEEEcCCc-cEEcCCCEEEEEEEEeecCCC-EEEEEECCEE--CccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEE
Confidence            4455444443 678899999999999988877 8999998743  222222322   23445589999999999999999


Q ss_pred             EEEcCCceEEeeEEEEEEeCCCCCCCCc----ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc--eeE-EEec
Q psy11549        135 AAQNAIGTQVTPCLYQVVLAGKPQPPQN----CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLV-NLTN  207 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~v~~~~~p~~p~~----~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--~~~-~~~~  207 (261)
                      .+.+..+.......+.|........|..    ..+....|..+.|.|.+  . +.|.....|++......  ..+ ....
T Consensus        80 ~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~-g~p~p~i~W~~~~~~~~~~~~~~~~~~  156 (197)
T 2j8h_A           80 RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF--S-GKPDPVITWQKGQDLIDNNGHYQVIVT  156 (197)
T ss_dssp             EEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE--E-EESCCEEEEEESSCEECSSSSCEEEEC
T ss_pred             EEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE--E-ecCCCcEEEEECCEEeecCCCEEEEEc
Confidence            9999888766654555543211112221    22344569999999997  3 33433334444432211  011 1122


Q ss_pred             CCCCcEEEcC-CCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        208 LDTPAFTLED-LGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       208 ~~~~~~~i~~-~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      .....+.|.+ +...|.|.|  +|.|.|..|....+..+.+
T Consensus       157 ~~~~~L~i~~~~~~~d~G~Y--~C~a~N~~g~~~~~~~l~V  195 (197)
T 2j8h_A          157 RSFTSLVFPNGVERKDAGFY--VVCAKNRFGIDQKTVELDV  195 (197)
T ss_dssp             SSEEEEECTTCCCGGGCEEE--EEEEEETTEEEEEEEEEEE
T ss_pred             CCceEEEEeCCCCcccCEeE--EEEEEeCCCcEeEEEEEEE
Confidence            2346788888 999999999  9999999998766666555

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.83  E-value=5.6e-19  Score=126.75  Aligned_cols=184  Identities=15%  Similarity=0.137  Sum_probs=120.7

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      .+|.+...... +.+..|+.+.|.|.+.+.|.+ .+.|++++.. ............+....|.|.++..+|+|.|+|.+
T Consensus         6 ~~P~~~~~~~~-~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   82 (197)
T 3lcy_A            6 EAPGIRKEMKD-VTTKLGEAAQLSCQIVGRPLP-DIKWYRFGKE-LIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA   82 (197)
T ss_dssp             EEEEEEECCCC-EEEETTSEEEEEEEEEEESCC-EEEEEETTEE-ECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred             CCCcccccCCc-eEEeCCCcEEEEEEEecCCCC-EEEEEECCEE-CCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence            45665555444 678899999999999998877 8999998742 11222223344555668999999999999999999


Q ss_pred             EcCCceEEeeEEEEEEeCC--CCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc--eeE-EEecCCCC
Q psy11549        137 QNAIGTQVTPCLYQVVLAG--KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLV-NLTNLDTP  211 (261)
Q Consensus       137 ~~~~~~~~~~~~~~v~~~~--~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--~~~-~~~~~~~~  211 (261)
                      .+..+.......+.+....  .+..+....+....|..+.|.|.+  .+..+..+. |+++.....  ... ........
T Consensus        83 ~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~--~~~p~p~v~-W~~~~~~~~~~~~~~~~~~~~~~  159 (197)
T 3lcy_A           83 TNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY--IGRPVPAMT-WFHGQKLLQNSENITIENTEHYT  159 (197)
T ss_dssp             ECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEE--EEESCCEEE-EEETTEECCCCSSEEEEECSSEE
T ss_pred             ECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEE--eeeeCCeeE-EeECCEECCCCCceEEEEcCCEE
Confidence            9988877665455444211  111122233444569999999997  333334444 444322211  111 11122226


Q ss_pred             cEEEcCCC-CCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        212 AFTLEDLG-LDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       212 ~~~i~~~~-l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .+.|.++. .++.|.|  +|.|.|..|....+..+.+.
T Consensus       160 ~L~i~~~~~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          160 HLVMKNVQRKTHAGKY--KVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             EEEESSCCHHHHCEEE--EEEEECSSCEEEEEEEEEEE
T ss_pred             EEEEccccchhhCceE--EEEEEcCcCceEEEEEEEEe
Confidence            78899966 3689999  99999999988777766664

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.83  E-value=1.2e-19  Score=135.72  Aligned_cols=202  Identities=12%  Similarity=0.158  Sum_probs=103.8

Q ss_pred             CCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC----CceeEEEEcCCccc
Q psy11549         27 VSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP----ARSFKWKFNNSGET  102 (261)
Q Consensus        27 ~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~~~~W~~~~~~~~  102 (261)
                      ++.+|+|.|+|.|.   |.. ...+.+.+..++.+...+.. +.+.+|++++|.|.+.+.++    ...+.|++...+..
T Consensus        11 v~~~dsg~Y~C~a~---g~~-~~~~~~~~~~~~~~~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~   85 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYS-FTNYWMNWLRELVMTQSPLT-LSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQS   85 (254)
T ss_dssp             -------------------------------CCCEEEECSE-EEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSC
T ss_pred             ecCCccEEEEEcCc---hhh-hhhhhhheeeceeEEeCCce-EEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCC
Confidence            78899999999998   333 22334444445555443333 77889999999999998873    13899998543221


Q ss_pred             cc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEe--
Q psy11549        103 LD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRN--  167 (261)
Q Consensus       103 ~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~--  167 (261)
                      ..           ....++.  .......|.|.++..+|+|.|+|.+.+..+..... ...+.+...+.+|. +.+..  
T Consensus        86 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~-~~~l~V~~~~~~P~-v~~~~~~  163 (254)
T 2c1o_A           86 PKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGA-GTKLELKRADAAPT-VSIFPPS  163 (254)
T ss_dssp             CEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBC-CEEEEECCCCBCCE-EEEECCC
T ss_pred             ceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecC-CEEEEECCCCCCCe-eEeecCC
Confidence            10           0112332  23345589999999999999999999875532221 11233333333332 22211  


Q ss_pred             ---ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcccee----EEEecCC------CCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        168 ---ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLL----VNLTNLD------TPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       168 ---~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~----~~~~~~~------~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                         ..+..++|.|.+  .+..|.. .+.|+++.......    .......      ...|.|.++..+|+|.|  +|.|.
T Consensus       164 ~~~~~g~~v~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y--~C~a~  239 (254)
T 2c1o_A          164 SEQLTSGGASVVCFL--NNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSY--TCEAT  239 (254)
T ss_dssp             HHHHHTTEEEEEEEE--EEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEE--EEEEE
T ss_pred             hhhccCCcEEEEEEE--ecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeE--EEEEE
Confidence               236799999997  3333432 23444543322111    1111111      13678888777899999  99999


Q ss_pred             cCCCcC
Q psy11549        234 NAKGRS  239 (261)
Q Consensus       234 N~~G~~  239 (261)
                      |.....
T Consensus       240 n~~~~~  245 (254)
T 2c1o_A          240 HKTSTS  245 (254)
T ss_dssp             CTTCSS
T ss_pred             cCCCCC
Confidence            998754

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.82  E-value=8.2e-19  Score=127.58  Aligned_cols=178  Identities=16%  Similarity=0.164  Sum_probs=114.8

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE-e-CCceeEEEEecC-CCCcCeEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS-S-GSRGSMLRYTPV-TELDYGTLS  133 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~-~~~~~~l~i~~~-~~~d~g~y~  133 (261)
                      .+|.+...+.. ..+.+|+.+.|.|.+.+.|.+ .+.|++++..  +........ . ......|.|.++ ..+|+|.|+
T Consensus         5 ~~P~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~-~v~W~k~~~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~   80 (212)
T 2yd6_A            5 TPPRFTRTPVD-QTGVSGGVASFICQATGDPRP-KIVWNKKGKK--VSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE   80 (212)
T ss_dssp             EEEEEEECCCC-EEEETTSCEEEEEEEEEESCC-EEEEEETTEE--CCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEE
T ss_pred             CCCeEEeCcce-eEEecCCeEEEEEEEeeCCCC-EEEEEECCcC--CCCCceeEEEEcCCCceEEEEeccCCCCCCeEEE
Confidence            45666655444 678899999999999988887 8999998742  222221111 1 234567999999 599999999


Q ss_pred             EEEEcCCceEEeeEEEEEEeC--CCCCCCCc----ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-----ee
Q psy11549        134 CAAQNAIGTQVTPCLYQVVLA--GKPQPPQN----CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-----LL  202 (261)
Q Consensus       134 C~~~~~~~~~~~~~~~~v~~~--~~p~~p~~----~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-----~~  202 (261)
                      |.+.|..|.......+.|...  .++..|..    .......|+.+.|.|.+  . +.|.....|++......     ..
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~--~-g~p~p~v~W~~~g~~l~~~~~~~~  157 (212)
T 2yd6_A           81 CVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA--S-GNPDPEITWFKDFLPVDTSNNNGR  157 (212)
T ss_dssp             EEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEE--E-CSSCCEEEEEETTEEC------CC
T ss_pred             EEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEe--c-CCCCCeEEEEECCccccCcCCCce
Confidence            999999887666545544432  11222211    11223468999999997  3 33433344444432211     01


Q ss_pred             E-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCcee
Q psy11549        203 V-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVI  243 (261)
Q Consensus       203 ~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~  243 (261)
                      . .........|.|.+++.+|.|.|  +|.|.|.+|....+.
T Consensus       158 ~~~~~~~~~~~L~i~~~~~~d~G~Y--~C~a~N~~G~~~s~~  197 (212)
T 2yd6_A          158 IKQLRSESIGALQIEQSEESDQGKY--ECVATNSAGTRYSAP  197 (212)
T ss_dssp             EEEEEETTEEEEEECSCCGGGCEEE--EEEEEETTEEEECCC
T ss_pred             EEEEecCCeEEEEEcCCCcccCEEE--EEEEECCCCcccccc
Confidence            1 11223347899999999999999  999999999665443

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.82  E-value=2.1e-19  Score=136.94  Aligned_cols=147  Identities=17%  Similarity=0.318  Sum_probs=108.8

Q ss_pred             CCCCeeccC-CCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCc-ceeeeEEEEEEeeceeecCcee-EEEeeCCCcE
Q psy11549          1 MAGGIPLAH-NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKYAPICKSDRIV-IVGASRSESV   77 (261)
Q Consensus         1 ~~ng~~l~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~-~~s~~~~l~V~~~p~~~~~~~~-~~~~~~g~~~   77 (261)
                      +|||.++.. ...+.....+++|.|.+++.+|+|.|+|.+.|..+. .....+.|.|..+|.+...... ...+..|+.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~  212 (291)
T 2wim_A          133 LYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM  212 (291)
T ss_dssp             ECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEE
T ss_pred             EECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeE
Confidence            467777763 344556667789999999999999999999998744 3456678888888876654422 2457789999


Q ss_pred             EEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         78 DIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        78 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      .|.|.+.+.|.+ .+.|++++.  .+. ...++........|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus       213 ~l~C~~~g~p~p-~v~W~~~g~--~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  282 (291)
T 2wim_A          213 TFSCRASGSPEP-AISWFRNGK--LIE-ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV  282 (291)
T ss_dssp             EEECBCCCBSCC-EEEEEETTE--ECC-CTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC
T ss_pred             EEEEEeecCCCC-eEEEEECCE--ECc-CCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEE
Confidence            999999998888 899999874  222 2234444444568999999999999999999999998888544443

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.82  E-value=4.5e-19  Score=128.92  Aligned_cols=182  Identities=17%  Similarity=0.210  Sum_probs=117.8

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE---eCCceeEEEEecCCC-CcCeEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS---SGSRGSMLRYTPVTE-LDYGTLS  133 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~-~d~g~y~  133 (261)
                      +|.+...+.. ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +.....++.   ..+....|.|.++.. +|+|.|+
T Consensus         6 pP~~~~~p~~-~~v~~G~~v~l~C~~~g~p~~-~v~W~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~   81 (212)
T 2yd1_A            6 PPEIIRKPQN-QGVRVGGVASFYCAARGDPPP-SIVWRKNGKK--VSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE   81 (212)
T ss_dssp             CCEEEECCCC-EEEETTSCEEEEEEEECSSCC-EEEEEETTEE--CCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEE
T ss_pred             CCEEEcCCCc-eEEecCCEEEEEEEEccCCCC-eEEEEECCEE--CCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEE
Confidence            4555554444 678899999999999998887 8999998743  222233332   234446899999999 9999999


Q ss_pred             EEEEcCCce-EEeeEEEEEEeCCC--CCCCCc----ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc---eeE
Q psy11549        134 CAAQNAIGT-QVTPCLYQVVLAGK--PQPPQN----CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN---LLV  203 (261)
Q Consensus       134 C~~~~~~~~-~~~~~~~~v~~~~~--p~~p~~----~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~---~~~  203 (261)
                      |.+.|..+. ......+.|.....  +..|..    .......|..+.|.|.+  .+..+.. +.|++......   ...
T Consensus        82 C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~--~g~p~p~-i~W~~~~~~~~~~~~~~  158 (212)
T 2yd1_A           82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKA--IGNPTPN-IYWIKNQTKVDMSNPRY  158 (212)
T ss_dssp             EEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEE--ECSSCCE-EEEEETTEECCTTSTTE
T ss_pred             EEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEe--ccCCCCe-EEEEECCeEcccCCCeE
Confidence            999998887 45544444443211  111211    11223469999999997  3333334 44444432211   011


Q ss_pred             EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce-eeeeeeecc
Q psy11549        204 NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV-IWDDFSMSG  251 (261)
Q Consensus       204 ~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s-~~~~~~~~~  251 (261)
                      ..   ....|.|.+++..|.|.|  +|.|.|..|..... ..+.|....
T Consensus       159 ~~---~~~~L~i~~v~~~d~G~Y--~C~a~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          159 SL---KDGFLQIENSREEDQGKY--ECVAENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             EE---ETTEEEECSCCGGGCEEE--EEEEEETTEEEECCCEEEEEEC--
T ss_pred             Ec---cCCeEEEccCChhhCEEE--EEEeecCCCceeEEEEEEEEEecc
Confidence            11   135899999999999999  99999999987654 566665443

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.82  E-value=3.3e-19  Score=130.28  Aligned_cols=135  Identities=16%  Similarity=0.174  Sum_probs=100.0

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee---------------ceeecCc
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA---------------PICKSDR   65 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~---------------p~~~~~~   65 (261)
                      +|||.++...       .+++|.|.+++.+|+|.|+|.+.|..+...+..+.|.|...               |.+....
T Consensus        53 ~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~  125 (218)
T 3k0w_A           53 FKMNKEIPNG-------NTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP  125 (218)
T ss_dssp             EETTEECTTC-------CSSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECC
T ss_pred             EECCEECCCC-------CCCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECC
Confidence            3566666432       24689999999999999999999998876566788888765               3333333


Q ss_pred             eeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         66 IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        66 ~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .. ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +...        ....|.|.++..+|+|.|+|.|.|..|....
T Consensus       126 ~~-~~v~~G~~v~L~C~~~g~p~~-~v~W~~~~~~--~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s  193 (218)
T 3k0w_A          126 TS-QKLMPGSTLVLQCVAVGSPIP-HYQWFKNELP--LTHE--------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS  193 (218)
T ss_dssp             CC-EEECTTCCEEEECEEEBSSCC-EEEEEETTEE--CTTC--------CSSEEEESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred             Cc-eeecCCCcEEEEEEecccCCC-eEEEEECCEE--CCCC--------CCCEEEEeecChhcCEEEEEEEEcCCCCcee
Confidence            33 568899999999999998888 8999997742  2111        1237999999999999999999998876433


Q ss_pred             eEEEEEEeCC
Q psy11549        146 PCLYQVVLAG  155 (261)
Q Consensus       146 ~~~~~v~~~~  155 (261)
                      . .+.+.+..
T Consensus       194 ~-~~~l~V~~  202 (218)
T 3k0w_A          194 K-KVEIIIDE  202 (218)
T ss_dssp             C-CEEEEECC
T ss_pred             e-eEEEEEeC
Confidence            2 34444433

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.82  E-value=4.1e-19  Score=127.25  Aligned_cols=182  Identities=14%  Similarity=0.098  Sum_probs=119.1

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      .+|.+...+.. ..+.+|+.+.|.|.+.+.|.+ .+.|++++....... ...++........|.|.++..+|+|.|+|.
T Consensus         4 ~~P~~~~~~~~-~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (194)
T 2a38_A            4 QAPTFTQPLQS-VVVLEGSTATFEAHISGFPVP-EVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK   81 (194)
T ss_dssp             EEEEEEECCCC-EEEETTSCEEEEEEEEEESCC-EEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEccCCc-eEEECCCEEEEEEEEEecCCC-EEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            34555544444 678899999999999998877 899999875322111 123344455567899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEEeC-CCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc--eeEE-EecC
Q psy11549        136 AQNAIGTQVTPCLYQVVLA-GKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLVN-LTNL  208 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~~~-~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--~~~~-~~~~  208 (261)
                      +.+..+.......+.+... .+|.   .+..  +....|..+.|.|.+  .+..+..+ .|+++.....  .... ....
T Consensus        82 ~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~--~~~~~g~~~~l~C~~--~g~p~~~v-~W~~~~~~~~~~~~~~~~~~~  156 (194)
T 2a38_A           82 ATNGSGQATSTAELLVKAETAPPNFVQRLQS--MTVRQGSQVRLQVRV--TGIPTPVV-KFYRDGAEIQSSLDFQISQEG  156 (194)
T ss_dssp             EEETTEEEEEEEEEEEECCCEEEEEEECCCC--EEECTTEEEEEEEEE--EEESCCEE-EEEETTEECCCSSSEEEEEET
T ss_pred             EEcCCceEeEEEEEEEccCCCCCEEEeCCcc--EEEcCCCEEEEEEEE--EEecCCeE-EEEECCEECCCCCcEEEEEcC
Confidence            9998887666544444421 1221   2222  333568999999997  33333444 4444432211  1111 1122


Q ss_pred             CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        209 DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       209 ~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      ....+.|.+++..|.|.|  +|.|.|..|....+..+.|
T Consensus       157 ~~~~L~i~~~~~~d~G~Y--~C~a~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          157 DLYSLLIAEAYPEDSGTY--SVNATNSVGRATSTAELLV  193 (194)
T ss_dssp             TEEEEEEEEECGGGCEEE--EEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEECCCChhcCeEE--EEEEEeCCCceEEEEEEEE
Confidence            223688999888999999  9999999998766665554

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.82  E-value=4e-18  Score=131.96  Aligned_cols=232  Identities=14%  Similarity=0.150  Sum_probs=140.8

Q ss_pred             CCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEE
Q psy11549          2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHC   81 (261)
Q Consensus         2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C   81 (261)
                      |||..+.. ...+....+++|.|.+++..|+|.|+|.+   .|.. ...+.|.|..+|....  .  .-...+....+.|
T Consensus        43 ~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~-~~~~~L~V~~pP~~P~--l--~c~~~~~~~~~~c  113 (325)
T 1n26_A           43 LRKPAAGS-HPSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRP-AGTVHLLVDVPPEEPQ--L--SCFRKSPLSNVVC  113 (325)
T ss_dssp             EECSSSSC-CCEEEEEESSEEEECSCCGGGCEEEEEES---SSSC-SCEEEEEECCCCCCCC--C--EEEBSSTTSCEEE
T ss_pred             ECCccCCc-cccccccccceEEecccchhhCeEeEEEe---CCEE-eeeEEEEeccCCCCCc--e--eEEeecCCCcEEE
Confidence            45555421 22344556789999999999999999993   4554 5568999988775322  1  1111333335556


Q ss_pred             EEeeCC---CCce--eEEEEc-CCccccccCCceEE--eCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEe-eEEEEE
Q psy11549         82 AVEADP---PARS--FKWKFN-NSGETLDVGSERFS--SGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVT-PCLYQV  151 (261)
Q Consensus        82 ~~~~~~---~~~~--~~W~~~-~~~~~~~~~~~~~~--~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~-~~~~~v  151 (261)
                      ......   .+..  +.+.+. +.. .... .....  .........+..+. ....+.|+|.|.|..|.... ...+.+
T Consensus       114 ~W~~~~~~~~~~~y~l~~~~~~~~~-~~~~-~~~c~~~~~~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s~~~~~~~  191 (325)
T 1n26_A          114 EWGPRSTPSLTTKAVLLVRKFQNSP-AEDF-QEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQG  191 (325)
T ss_dssp             EECCSSCCCTTCEEEEEEEEESSSS-CEEE-EEEEEEETTTTEEEEEECCCTTCCCEEEEEEEEEETTEEEECCCEEEET
T ss_pred             EECCCCCCCCCceEEEEEEEccCCC-CCcc-cccCCCCCCCCCEEEEECCCcccCcEEEEEEEEEcCCCCcccCcEEEee
Confidence            544221   1212  222221 110 0000 00010  11223456666654 44667889999999987643 223333


Q ss_pred             EeCCCCCCCCcceEEeecC--CeEEEEeecCCC--CCCC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        152 VLAGKPQPPQNCSVRNETT--SSVHISCTPGYD--GGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       152 ~~~~~p~~p~~~~v~~~~~--~~~~l~c~~~~~--~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      ....+|.+|.++.+....+  ..+.|+|.++..  .+.+ ..|.+.|+..................+.|.+  |.++..|
T Consensus       192 ~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~~~W~~~~~~~~~~~~~l~~--L~p~t~Y  269 (325)
T 1n26_A          192 CGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHD--AWSGLRH  269 (325)
T ss_dssp             TTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGGCSEEEESS--CCTTCCE
T ss_pred             ccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCCCCCCEEEcccCCceEEEEeC--CCCCCeE
Confidence            3346788999888876543  589999998654  2333 6699999887554211111223457899999  9999999


Q ss_pred             EEEEEEEcCCCcCCceeeee
Q psy11549        227 RVVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       227 ~~~~~a~N~~G~~~~s~~~~  246 (261)
                      +|+|+|.|..|.+.+|.+.+
T Consensus       270 ~~rVrA~n~~g~G~~S~wS~  289 (325)
T 1n26_A          270 VVQLRAQEEFGQGEWSEWSP  289 (325)
T ss_dssp             EEEEEEEETTTBSCCCCCCC
T ss_pred             EEEEEEecCCCCCCCcCCCC
Confidence            99999999999777776654

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.82  E-value=5.2e-19  Score=136.35  Aligned_cols=147  Identities=15%  Similarity=0.254  Sum_probs=105.1

Q ss_pred             CCCCeeccCCCCceEEEECC--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe--------------------e
Q psy11549          1 MAGGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY--------------------A   58 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~--------------------~   58 (261)
                      +|||+++..+........++  +|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..                    .
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~  221 (317)
T 2y25_A          143 SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR  221 (317)
T ss_dssp             EESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             EECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceE-EEEEEEeeeeccccchhhcccCCcccCcCCC
Confidence            47888886544323322332  49999999999999999999988776 4556665431                    1


Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe--C-CceeEEEEecCCCCcCeEEEEE
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS--G-SRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~-~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      |.+.........+..|+.+.|.|.+.+.|.+ .+.|++++..  +.. ..++..  . +..+.|.|.++..+|+|.|+|.
T Consensus       222 p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~i~W~~~g~~--~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  297 (317)
T 2y25_A          222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPP-EVSWLKNEKA--LAS-DDHCNLKFEAGRTAYFTINGVSTADSGKYGLV  297 (317)
T ss_dssp             CEEEEBCCSEEEEETTSBBCEEEEEECSSCC-EEEEEESSSE--ECC-CSSEEECCBTTTEEEEEEBSCCSTTCEEEEEE
T ss_pred             CcccccCCccEEEEcCCEEEEEEEEecCCCC-EEEEEECCEe--CCC-CCcEEEEEcCCCEEEEEECCCCHHHCEEEEEE
Confidence            2233222223678899999999999999888 8999998742  222 222322  2 4456899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEE
Q psy11549        136 AQNAIGTQVTPCLYQVV  152 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~  152 (261)
                      |.|..|.......+.|.
T Consensus       298 a~N~~g~~~~~~~l~V~  314 (317)
T 2y25_A          298 VKNKYGSETSDFTVSVF  314 (317)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            99999988775555554

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.82  E-value=5.6e-19  Score=127.16  Aligned_cols=144  Identities=17%  Similarity=0.262  Sum_probs=101.8

Q ss_pred             CCCCeeccC--CCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCccee--eeEEEEEE-------eeceeecCceeEE
Q psy11549          1 MAGGIPLAH--NTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATS--NQLKLRVK-------YAPICKSDRIVIV   69 (261)
Q Consensus         1 ~~ng~~l~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s--~~~~l~V~-------~~p~~~~~~~~~~   69 (261)
                      +|||.++..  +..+.....+++|.|.+++.+|+|.|+|.+.+..+....  ..+.+.+.       .+|.+...... .
T Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~  123 (201)
T 3s97_C           45 LLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKD-V  123 (201)
T ss_dssp             EESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCC-E
T ss_pred             EECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCc-e
Confidence            467777752  233334445679999999999999999999987655422  23444443       34444433332 6


Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+..|+.+.|.|.+.+.|.+ .+.|++++..  +. ....+...  ...|.|.++..+|+|.|+|.|.|..|.......+
T Consensus       124 ~~~~g~~~~l~C~~~g~p~p-~v~W~~~~~~--~~-~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  197 (201)
T 3s97_C          124 YALMGQNVTLECFALGNPVP-DIRWRKVLEP--MP-STAEISTS--GAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI  197 (201)
T ss_dssp             EEETTCCEEEEEEEEEESCC-EEEEEETTBC--CC-TTCEEETT--TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEecCCcEEEEEEccCCCCC-ceEEEeCCCc--CC-CceeecCC--CCEEEEccCChhhCEEEEEEEEecCCceeeeEEE
Confidence            78899999999999998888 8999998742  21 12222222  3479999999999999999999999988775555


Q ss_pred             EE
Q psy11549        150 QV  151 (261)
Q Consensus       150 ~v  151 (261)
                      .|
T Consensus       198 ~V  199 (201)
T 3s97_C          198 YV  199 (201)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.82  E-value=3.5e-19  Score=129.39  Aligned_cols=152  Identities=26%  Similarity=0.379  Sum_probs=103.9

Q ss_pred             CCCCeeccCCC----CceEEEECCeEEE-----ccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEe
Q psy11549          1 MAGGIPLAHNT----SARIILSNQSLVL-----QKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGA   71 (261)
Q Consensus         1 ~~ng~~l~~~~----~~~~~~~~~~L~i-----~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~   71 (261)
                      +|||.++....    ..+....++.+.+     .+++.+|+|.|+|.+.|..|...+..+.|.|...|...........+
T Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~  123 (212)
T 2v9r_A           44 YKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMV  123 (212)
T ss_dssp             EETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEE
T ss_pred             EECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEe
Confidence            46788875322    2244445555544     45699999999999999887765567788887654333222222668


Q ss_pred             eCCCcEEEEEEE-eeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         72 SRSESVDIHCAV-EADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        72 ~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      ..|+.+.|.|.+ .+.|.+ .+.|++++.  .+.....++...+.  .|.|.++..+|+|.|+|.|.|..|..... .+.
T Consensus       124 ~~g~~~~l~C~~~~~~p~~-~v~W~~~~~--~l~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~-~~~  197 (212)
T 2v9r_A          124 AVGEPAVMECQPPRGHPEP-TISWKKDGS--PLDDKDERITIRGG--KLMITYTRKSDAGKYVCVGTNMVGERESE-VAE  197 (212)
T ss_dssp             ETTSCEEEECBCCCEESCC-EEEEEETTE--EECTTSTTEEEETT--EEEESSCCGGGCEEEEEEEEETTEEEECC-CEE
T ss_pred             cCCCcEEEEEecCCCCCCC-EEEEEECCc--cCCCCcceEEccCC--eEEEeeCCHhhCeeEEEEEecccCceecc-eEE
Confidence            899999999998 787877 899999874  23233333333333  79999999999999999999998876542 244


Q ss_pred             EEeCCCCC
Q psy11549        151 VVLAGKPQ  158 (261)
Q Consensus       151 v~~~~~p~  158 (261)
                      +.|..+|.
T Consensus       198 l~V~~~P~  205 (212)
T 2v9r_A          198 LTVLERPS  205 (212)
T ss_dssp             EEEEC---
T ss_pred             EEEEeCch
Confidence            55555554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.82  E-value=4.4e-19  Score=126.50  Aligned_cols=172  Identities=14%  Similarity=0.221  Sum_probs=112.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+.+|+.+.|.|.+.+.|.+ .+.|++++.... .....++..... ..|.|.++..+|+|.|+|.+.+..+.......
T Consensus        12 ~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~-~~~~~~~~~~~~-~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~   88 (189)
T 2v5t_A           12 QEFKQGEDAEVVCRVSSSPAP-AVSWLYHNEEVT-TISDNRFAMLAN-NNLQILNINKSDEGIYRCEGRVEARGEIDFRD   88 (189)
T ss_dssp             EEEETTSCEEECCEEECSSCC-EEEEEC-----C-BCCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCcEEEEEEEcCCCCC-EEEEEECCccce-eccCCeEEEecC-CCEEEeeCCHhHCcEEEEEEEEcCCCceEEEE
Confidence            567899999999999988777 899998874322 223334443332 36999999999999999999988654443334


Q ss_pred             EEEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcccee-EEEecCCCCcEEEcCCCCCCcc
Q psy11549        149 YQVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL-VNLTNLDTPAFTLEDLGLDGTV  224 (261)
Q Consensus       149 ~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~~  224 (261)
                      +.+.+..+|.   .+.........|..+.|.|.+  .+..+..+ .|+++....... ..........+.|.++..+|.|
T Consensus        89 ~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~--~g~p~~~v-~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  165 (189)
T 2v5t_A           89 IIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA--SGSPEPAI-SWFRNGKLIEENEKYILKGSNTELTVRNIINSDGG  165 (189)
T ss_dssp             EEEEEEEEEEEECSCCEEEEETTSCCCEEEECEE--EEESCCEE-EEEETTEECCCSSSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEecCCCCcccccccccccccCCCcEEEEEEE--ccCCCCeE-EEEECCEECcCCCcEEEecCCCEEEEcCCChhhCe
Confidence            4444444443   222223344569999999997  33323334 444443221111 1112233578999999999999


Q ss_pred             EEEEEEEEEcCCCcCCceeeeeee
Q psy11549        225 LMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       225 ~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .|  +|.|.|..|....+..+.+.
T Consensus       166 ~Y--~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          166 PY--VCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             EE--EEEEEETTEEEEEEEEEEEE
T ss_pred             eE--EEEEEeCCCceeEEEEEEEE
Confidence            99  99999999988877777664

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.81  E-value=3e-19  Score=128.26  Aligned_cols=170  Identities=14%  Similarity=0.089  Sum_probs=108.6

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+..|++++|.|.+.+ +.+ .+.|++++....  ..............|.|.++..+|+|.|+|.+.|..+....+..+
T Consensus        15 ~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~--~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~   90 (196)
T 3p2t_A           15 VISWGNSVTIWCQGTL-EAR-EYRLDKEESPAP--WDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPL   90 (196)
T ss_dssp             EEETTCCEEEEEECCT-TCC-EEEEEETTSCSC--SEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCE
T ss_pred             cCCCCCcEEEEeeCCC-CCC-EEEEEECCCCCc--ccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccE
Confidence            4679999999999988 445 899999875322  111111112345689999999999999999999988743333344


Q ss_pred             EEEeCCCCCCCCcce---EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce---eE-EEecCCCCcEEEcCCCCCC
Q psy11549        150 QVVLAGKPQPPQNCS---VRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL---LV-NLTNLDTPAFTLEDLGLDG  222 (261)
Q Consensus       150 ~v~~~~~p~~p~~~~---v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~i~~~~l~~  222 (261)
                      .+.+...+.+|....   .....|+.++|.|.+  . +.+..+.| +++......   .. .........|.|.+++.+|
T Consensus        91 ~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~--~-~~~~~~~w-~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  166 (196)
T 3p2t_A           91 ELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS--R-SPMDTFLL-CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVH  166 (196)
T ss_dssp             EEEEECSSCCCEEEEESCSEECTTCCEEEEEEE--E-EEEEEEEE-EETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGG
T ss_pred             EEEecCCCCCCEEEeCCcceecCCCeEEEEEec--C-CCCCEEEE-EeCCCcccceeecccccccCcceEEEeCCCcccC
Confidence            555544333332110   022469999999997  2 33444544 444332211   11 1111234679999999999


Q ss_pred             ccEEEEEEEEEcCCC---cCCceeeeeeee
Q psy11549        223 TVLMRVVISGVNAKG---RSLPVIWDDFSM  249 (261)
Q Consensus       223 ~~~Y~~~~~a~N~~G---~~~~s~~~~~~~  249 (261)
                      +|.|  +|.|.|..+   .+..|..+.+..
T Consensus       167 ~G~Y--~C~a~n~~~~~~~s~~S~~~~l~V  194 (196)
T 3p2t_A          167 GGTY--RCFSSHGFSHYLLSHPSDPLELIV  194 (196)
T ss_dssp             CEEE--EEEEECGGGTTEECCCCCCEEEEE
T ss_pred             CCeE--EEEEEcCCCCcccCCCCCCEEEEe
Confidence            9999  999999987   456666665543

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.81  E-value=5.8e-19  Score=127.87  Aligned_cols=139  Identities=22%  Similarity=0.417  Sum_probs=100.2

Q ss_pred             CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee---ceeecCceeEEEeeCCCcEEEEEEEeeCCC
Q psy11549         12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA---PICKSDRIVIVGASRSESVDIHCAVEADPP   88 (261)
Q Consensus        12 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~   88 (261)
                      .+.....+++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+   |.+.....  . +..|+.+.|.|.+.+.| 
T Consensus        63 ~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~--~-~~~g~~v~l~C~~~~~p-  138 (208)
T 3r4d_A           63 GREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNT--T-VKELDSVTLTCLSNDIG-  138 (208)
T ss_dssp             SSEEECTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCS--S-CCTTCCEEEEEECSCTT-
T ss_pred             ceeEEecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCc--e-EeeCCCEEEEEECCCCC-
Confidence            34555566799999999999999999999986555467788888755   33332222  1 67899999999999865 


Q ss_pred             CceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCC
Q psy11549         89 ARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP  159 (261)
Q Consensus        89 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~  159 (261)
                      + .+.|++++..  +.. ..++........|.|.++..+|+|.|+|.|.|..|..... .+++.+..+|..
T Consensus       139 p-~i~W~~~g~~--l~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~-~~~l~v~~~~~~  204 (208)
T 3r4d_A          139 A-NIQWLFNSQS--LQL-TERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSN-SIKLDIIFDPHH  204 (208)
T ss_dssp             C-EEEEEETTEE--CCC-CSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECC-CEEECCC-----
T ss_pred             C-ceEEEECCEe--CCC-CCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCC-ceeeeEEeCCcc
Confidence            5 8999997742  222 2333433333579999999999999999999999886654 677777666543

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.81  E-value=1.9e-18  Score=127.10  Aligned_cols=190  Identities=13%  Similarity=0.160  Sum_probs=121.2

Q ss_pred             eeceeecCc---eeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEE
Q psy11549         57 YAPICKSDR---IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        57 ~~p~~~~~~---~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      .+|.+....   .....+..|+.+.|.|.+.+.|.+ .+.|++++....................|.|.++..+|+|.|+
T Consensus        14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~   92 (231)
T 3ojm_B           14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT   92 (231)
T ss_dssp             EEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred             cCCccccccccCceeEEEccCCCEEEEEecccCCCC-eEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence            455554333   123678899999999999998887 8999998743221111111233334457999999999999999


Q ss_pred             EEEEcCCceEEeeEEEEEEeCCCCC------CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc-------c
Q psy11549        134 CAAQNAIGTQVTPCLYQVVLAGKPQ------PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL-------N  200 (261)
Q Consensus       134 C~~~~~~~~~~~~~~~~v~~~~~p~------~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~-------~  200 (261)
                      |.+.+..+.......+.+.......      .|..  +....|..+.|.|.+  .+..+..+.|++.....+       .
T Consensus        93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~--~~~~~g~~~~l~C~~--~~~p~p~v~W~~~~~~~g~~~~~~~~  168 (231)
T 3ojm_B           93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPAN--ASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGL  168 (231)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCC--EEEETTCCEEEECCE--ECSSCCEEEEEEECCBTTBSBCTTSC
T ss_pred             EEEecccCcccccEEEEEEcCCCCCCceeeccCCc--eEEEeCCcEEEEEEE--ecCCCCEEEEEECCCCCCccccCCCc
Confidence            9999988877665455554321111      1222  333569999999997  333334444443211110       0


Q ss_pred             eeE-EE-----ecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeecccc
Q psy11549        201 LLV-NL-----TNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGAH  253 (261)
Q Consensus       201 ~~~-~~-----~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~~  253 (261)
                      ... ..     .......|.|.++...|.|.|  +|.|.|..|....+..+.+..++..
T Consensus       169 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEY--ICKVSNYIGQANQSAWLTVLPKQQA  225 (231)
T ss_dssp             BCEEEEEECSTTCSCTTEEEECSCCGGGCEEE--EEEEEETTEEEEEEEEEEEECCC--
T ss_pred             ceEeEecccccccCCccEEEEecCCHHHCeEE--EEEEEeccceEeeEEEEEEecCCCC
Confidence            000 00     112335699999999999999  9999999999877777777655433

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.81  E-value=7.1e-18  Score=120.45  Aligned_cols=174  Identities=10%  Similarity=0.097  Sum_probs=112.8

Q ss_pred             eceeecCceeEEEeeC-CCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         58 APICKSDRIVIVGASR-SESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +|.+..+..  ..+.+ |+.+.|.|.+.+.+. +..+.|++++..  +...  ....  ....|.|.++..+|+|.|+|.
T Consensus         3 ~P~i~~~~~--~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~--~~~~--~~~~--~~~~L~i~~~~~~d~G~Y~C~   74 (190)
T 2wv3_A            3 EPRIVTSEE--VIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVE--LTAT--RKNA--SNMEYRINKPRAEDSGEYHCV   74 (190)
T ss_dssp             CCEEEECCC--EECCCSSSCEEEEEEEEECSSCEEEEEEEETTEE--CTTC--CBCC--SEEEEEESSCCGGGCEEEEEE
T ss_pred             CCcccccce--EEEccCCceEEEEEEeccCCCCceEEEEEECCEE--Cccc--ceEe--ccEEEEEecCCcccCEEEEEE
Confidence            455544332  33445 999999999998886 238999998742  2111  1111  345899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc------ceeEEE-
Q psy11549        136 AQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL------NLLVNL-  205 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~------~~~~~~-  205 (261)
                      +.+. +.....  +.+.+..+|.   .+..  .....|..+.|.|.+  .+..+..+.|.....+..      ...+.. 
T Consensus        75 ~~n~-~~~~~~--~~l~V~~~p~~~~~~~~--~~~~~g~~v~l~C~~--~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~  147 (190)
T 2wv3_A           75 YHFV-SAPKAN--ATIEVKAAPDITGHKRS--ENKNEGQDAMMYCKS--VGYPHPEWMWRKKENGVFEEISNSSGRFFII  147 (190)
T ss_dssp             EEET-TEEEEE--EEEEEECCCEEEEECSE--EEEETTSCEEEEEEE--ECSSCCEEEEEEEETTEEEECCCTTSCEEEE
T ss_pred             EEeC-Cccccc--EEEEEecCCcccccCCc--ceeeCCCcEEEEEEe--CccCCCceEEEEcCCCceeeeecCCCeEEEe
Confidence            9998 666554  4444445553   2222  233569999999997  333334454443222211      111211 


Q ss_pred             ecCCCCcEEEcCCCC-CCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        206 TNLDTPAFTLEDLGL-DGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       206 ~~~~~~~~~i~~~~l-~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .......|.|.++.+ +|.|.|  +|.|.|..|....+..+.++
T Consensus       148 ~~~~~~~L~i~~~~~~~d~G~Y--~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          148 NKENYTELNIVNLQITEDPGEY--ECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             ECSSEEEEEECSCCTTTSCEEE--EEEEECSSCEEEEEEEEEEE
T ss_pred             cCCCeeEEEEEeccccCCCEEE--EEEEEecCCcceeEEEEEEE
Confidence            112224799999994 999999  99999999988777777664

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.81  E-value=1.8e-18  Score=133.28  Aligned_cols=147  Identities=16%  Similarity=0.245  Sum_probs=107.9

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEE-eCCCccee--eeEEEEEE-----eeceeecCceeEEEee
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAI-NTKGEATS--NQLKLRVK-----YAPICKSDRIVIVGAS   72 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~-~~~~~~~s--~~~~l~V~-----~~p~~~~~~~~~~~~~   72 (261)
                      +|||+++..+.. +....+++|.|.+++.+|+|.|+|.|. |..|...+  ..+.|.+.     .+|.+..+....+.+.
T Consensus       144 ~k~~~~l~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~  222 (315)
T 1itb_B          144 YKDCKPLLLDNI-HFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVD  222 (315)
T ss_dssp             EETTEECCCCSS-SEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECC
T ss_pred             EECCEECCCccc-eEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEe
Confidence            478888875443 456678899999999999999999999 77777532  34444444     5666665554436788


Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCC-----ceEEeCC--------ceeEEEEecCCCCc-CeEEEEEEEc
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-----ERFSSGS--------RGSMLRYTPVTELD-YGTLSCAAQN  138 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-----~~~~~~~--------~~~~l~i~~~~~~d-~g~y~C~~~~  138 (261)
                      .|+.+.|.|.+.+.|.| .+.|++++..  +....     ..+....        ..+.|.|.++..+| +|.|+|.|.|
T Consensus       223 ~g~~v~l~C~~~g~P~p-~i~W~~~g~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N  299 (315)
T 1itb_B          223 LGSQIQLICNVTGQLSD-IAYWKWNGSV--IDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKN  299 (315)
T ss_dssp             SSSCEEEEEEEEECTTS-EEEEEETTEE--CCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEEC
T ss_pred             CCCcEEEEEEEecCCCC-eeEEEECCEE--CCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEec
Confidence            99999999999999888 8999998742  22211     1111111        23479999999999 9999999999


Q ss_pred             CCceEEeeEEEEE
Q psy11549        139 AIGTQVTPCLYQV  151 (261)
Q Consensus       139 ~~~~~~~~~~~~v  151 (261)
                      ..|.......+.+
T Consensus       300 ~~G~~~~~~~l~v  312 (315)
T 1itb_B          300 THGIDAAYIQLIY  312 (315)
T ss_dssp             TTCCEEEEEEEEC
T ss_pred             CCCceeEEEEEEe
Confidence            9998887544443

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.81  E-value=7.3e-20  Score=131.53  Aligned_cols=137  Identities=15%  Similarity=0.224  Sum_probs=92.9

Q ss_pred             CCCCeeccCCCCceE-EEECCeEEEccCCCCCCEeEEEEEEeCCC-cceeeeEEEEEEe---eceeecCceeEEEeeCCC
Q psy11549          1 MAGGIPLAHNTSARI-ILSNQSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRVKY---APICKSDRIVIVGASRSE   75 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~-~~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~   75 (261)
                      +|||.++........ ...+++|.|.+++.+|+|.|+|.|.|..+ ...+..+.|.|..   +|.+.....  ..+..|+
T Consensus        38 ~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~--~~v~~G~  115 (196)
T 3p2t_A           38 DKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPS--PLVTSGK  115 (196)
T ss_dssp             EETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESC--SEECTTC
T ss_pred             EECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCc--ceecCCC
Confidence            467777753211111 02346899999999999999999999987 3336677888864   333332222  2467999


Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .++|.|.+.+.+ + .+.|++++....................|.|.++..+|+|.|+|.|.|..+
T Consensus       116 ~v~L~C~~~~~~-~-~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          116 SVTLLCQSRSPM-D-TFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             CEEEEEEEEEEE-E-EEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             eEEEEEecCCCC-C-EEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            999999998743 3 799999875322211111111223345799999999999999999999865

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.81  E-value=4.4e-18  Score=132.04  Aligned_cols=146  Identities=16%  Similarity=0.166  Sum_probs=105.0

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeC--CCcc---eeeeEEEEEEeec----eeecCceeEEEe
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINT--KGEA---TSNQLKLRVKYAP----ICKSDRIVIVGA   71 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~--~~~~---~s~~~~l~V~~~p----~~~~~~~~~~~~   71 (261)
                      +|||+++..+..+... .+++|.|.+++.+|+|.|+|.|.|.  .|..   .+..+.|.|..+|    ... .+.. ..+
T Consensus       164 ~k~~~~l~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~-~~v  240 (329)
T 3oq3_B          164 YKNNQELIIDGTKYSQ-SGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPK-INV  240 (329)
T ss_dssp             EETTEECCCSSSSEEE-ETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSE-EEE
T ss_pred             EECCccCCCCCceEec-CCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCe-eEE
Confidence            5789988654444444 4889999999999999999999986  5433   2334778887665    233 2333 678


Q ss_pred             eCCCcEEEEEEEeeCC---CCceeEEEEcCCccccccCCceEEe---C--CceeEEEEecCCCCcCe-EEEEEEEcCCce
Q psy11549         72 SRSESVDIHCAVEADP---PARSFKWKFNNSGETLDVGSERFSS---G--SRGSMLRYTPVTELDYG-TLSCAAQNAIGT  142 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~  142 (261)
                      ..|+.+.|.|.+.+.|   ++..+.|++++... .......+..   .  .....|.|.++..+|+| .|+|.|.|..|.
T Consensus       241 ~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i-~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~  319 (329)
T 3oq3_B          241 TIGEPANITCTAVSTSLLVDDVLIDWENPSGWI-IGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD  319 (329)
T ss_dssp             CTTSCEEEEEEEEETTCCTTCCEEEEECTTSCB-CCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCE
T ss_pred             ecCCCEEEEEEEEECCCCCCCcEEEEEECCeee-eccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCc
Confidence            8999999999999998   34378999987531 1112111111   1  13557999999999999 999999999998


Q ss_pred             EEeeEEEE
Q psy11549        143 QVTPCLYQ  150 (261)
Q Consensus       143 ~~~~~~~~  150 (261)
                      ......+.
T Consensus       320 ~~~~~~l~  327 (329)
T 3oq3_B          320 KTLTTTVV  327 (329)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEE
Confidence            87754444

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.81  E-value=1.2e-19  Score=127.96  Aligned_cols=117  Identities=18%  Similarity=0.225  Sum_probs=87.2

Q ss_pred             CCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCC
Q psy11549         11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPA   89 (261)
Q Consensus        11 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~   89 (261)
                      ..+..+..+++|.|.+++.+|+|.|+|.+.|..|.. .+..+.|.|..++.   .+ . + ...+..+.|.|.+.+.|+|
T Consensus        52 ~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~---~p-~-i-~~~~~~v~L~C~~~g~p~p  125 (176)
T 1hng_A           52 SGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS---KP-M-I-YWECSNATLTCEVLEGTDV  125 (176)
T ss_dssp             STTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCC---CC-E-E-EEETTTTEEEEECSSCSSC
T ss_pred             CCeEEECCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCC---CC-E-E-EecCCcEEEEEEecCCCCc
Confidence            455666678899999999999999999999998875 45667788865431   11 1 1 1235579999999999987


Q ss_pred             ceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         90 RSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        90 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                       .+.|++++..  +....          .+.|.++..+|+|.|+|.|.|..|.....
T Consensus       126 -~i~W~~~g~~--l~~~~----------~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~  169 (176)
T 1hng_A          126 -ELKLYQGKEH--LRSLR----------QKTMSYQWTNLRAPFKCKAVNRVSQESEM  169 (176)
T ss_dssp             -EEEEEETTEE--EEEES----------SSEEEEECSCCSSCEEEEEEETTEEEEEE
T ss_pred             -EEEEEECCEE--CCCCC----------cEEEEEEEccCCeEEEEEEEecCCCceec
Confidence             8999997732  21111          14455777999999999999999887764

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.81  E-value=1.2e-18  Score=127.10  Aligned_cols=188  Identities=15%  Similarity=0.197  Sum_probs=116.5

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEEeCCcee--EEEEecCCCCcCeEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRGS--MLRYTPVTELDYGTLS  133 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~--~l~i~~~~~~d~g~y~  133 (261)
                      .+|.+...+.. +.+.+|+.+.|.|.+.+.|.+ .+.|++++....... ...++.......  .+.|.++..+|+|.|+
T Consensus         8 ~~P~i~~~p~~-~~v~~G~~v~L~C~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            8 QSPRIIEHPTD-LVVKKNEPATLNCKVEGKPEP-TIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCEEEECCCC-EEECTTSCEEECCEEECSSCC-EEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred             CCCEEecCCCc-eEEeCCCcEEEEEEcCCCCCC-eEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence            34555544444 678899999999999988877 899999774322111 122233322221  2367889999999999


Q ss_pred             EEEEcCCceEEe-eEEEEEEeCCCCC--CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--------e
Q psy11549        134 CAAQNAIGTQVT-PCLYQVVLAGKPQ--PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--------L  202 (261)
Q Consensus       134 C~~~~~~~~~~~-~~~~~v~~~~~p~--~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--------~  202 (261)
                      |.+.+..|.... ...+.+.+..++.  .|..  .....|+.+.|.|.+  ..+.|.....|++.......        .
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~--~~~~~g~~v~l~C~~--~~g~p~~~v~W~~~g~~~~~~~~~~~~~~  161 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAVLRDDFRVEPKD--TRVAKGETALLECGP--PKGIPEPTLIWIKDGVPLDDLKAMSFGAS  161 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECEECCSCSBCCCC--EEECTTSCEEECCBC--CCEESCCEEEEEETTEEECCCCCC---CC
T ss_pred             EEEecCCCccccccceEEEEEeCCCcEECCCc--cEEcCCCeEEEEEEC--CCCCCCCeEEEEECCcCCCcccccccccC
Confidence            999998876532 3344444322221  3333  333569999999986  34445433444444221110        0


Q ss_pred             EEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeeccc
Q psy11549        203 VNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       203 ~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~  252 (261)
                      ..........|.|.+++..|.|.|  +|.|.|..|....+..+.+....+
T Consensus       162 ~~~~~~~~~~L~i~~~~~~d~G~Y--~C~a~N~~G~~~~~~~~lv~~~~~  209 (217)
T 2vr9_A          162 SRVRIVDGGNLLISNVEPIDEGNY--KCIAQNLVGTRESSYAKLIVQVKA  209 (217)
T ss_dssp             CSEEEETTTEEEESSCCSTTCEEE--EEEEEETTEEEECCCEEEEEC---
T ss_pred             CcEEecCCCcEEEeeCCHHHCeEE--EEEEEcccceeccccEEEEEEeeh
Confidence            011112346899999999999999  999999999887776665554433

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.81  E-value=3.6e-18  Score=131.01  Aligned_cols=167  Identities=16%  Similarity=0.122  Sum_probs=120.8

Q ss_pred             EEeeCCCcEEEEEEEeeC-------CCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDIHCAVEAD-------PPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-------~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ..+..|++++|.|.+.+.       +.+ .+.|++++.  .+... ......+..+.|.|.++...+ |.|+|.|.+...
T Consensus        14 ~~v~~G~~v~l~C~~~~~~~~~~~~p~p-~i~W~~~g~--~i~~~-~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~g~   88 (303)
T 1i1r_A           14 PVVQLHSNFTAVCVLKEKCMDYFHVNAN-YIVWKTNHF--TIPKE-QYTIINRTASSVTFTDIASLN-IQLTCNILTFGQ   88 (303)
T ss_dssp             CEEETTCCEEEEEEECHHHHHHHTCCGG-GEEEEETTE--ECCGG-GCEEEETTEEEEEECSCCCSE-EEEEEEEEETTT
T ss_pred             ceEeCCCCEEEEEEECCccccccCCChh-heEEEECCE--ECChh-heeeeCCcEEEEEEcCcCCCc-eEEEEecccCCC
Confidence            447799999999999863       445 899999874  22221 112234445689999999885 999999987532


Q ss_pred             eEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCC-
Q psy11549        142 TQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGL-  220 (261)
Q Consensus       142 ~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l-  220 (261)
                      .........+.+..+|.+|.++.........+.|+|.++.+.+.+..|.+.++..................+.|.+  | 
T Consensus        89 ~~~~~~~~~l~v~~~P~~P~~l~~~~~~~~~v~l~W~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~--L~  166 (303)
T 1i1r_A           89 LEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDY--ST  166 (303)
T ss_dssp             EEEEEEEEEEEEECCCCCCEEEEEEEETTSCCEEEEECCSCCSSCCEEEEEEEETTEECCCEECCSSCTTEEECSS--CC
T ss_pred             cceEEEEEEEeccCCCCCCeeeEEEECCCCcEEEEccCCCCCCCCcCEEEEEEecCCCCccCCCcCCCceEEEECC--cC
Confidence            3222234556677899999988877666789999999877766677899998765432111122233457899999  8 


Q ss_pred             CCccEEEEEEEEEcCCCcCCce
Q psy11549        221 DGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       221 ~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      .++..|.|+|.|.|.+|.+.++
T Consensus       167 ~p~t~Y~f~V~A~N~~G~~~s~  188 (303)
T 1i1r_A          167 VYFVNIEVWVEAENALGKVTSD  188 (303)
T ss_dssp             CTTSCEEEEEEEEETTEEEECC
T ss_pred             cccccEEEEEEEEcCCCCcccC
Confidence            8999999999999999987643

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.80  E-value=5.5e-18  Score=125.57  Aligned_cols=181  Identities=14%  Similarity=0.173  Sum_probs=114.7

Q ss_pred             EEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         68 IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      .+.+.+|+.+.|.|.+.+.|.+ .+.|++++....................|.|.++..+|+|.|+|.+.+..+......
T Consensus        24 ~~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~  102 (241)
T 3grw_A           24 LLAVPAANTVRFRCPAAGNPTP-SISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTY  102 (241)
T ss_dssp             EEEEETTSEEEEECCEECSSCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ceEEcCCCeEEEEEEecCCCCc-eeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEE
Confidence            3778899999999999998877 899999875322211111223333445799999999999999999999888776654


Q ss_pred             EEEEEeCCCCCCCC-----cceEEeecCCeEEEEeecCCCCCCCeEEEEEEE---eCCcc----ceeEE---E----ecC
Q psy11549        148 LYQVVLAGKPQPPQ-----NCSVRNETTSSVHISCTPGYDGGLPQTFTLELY---SASDL----NLLVN---L----TNL  208 (261)
Q Consensus       148 ~~~v~~~~~p~~p~-----~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~---~~~~~----~~~~~---~----~~~  208 (261)
                      .+.+.... +.+|.     ........|..+.|.|.+  .+..+..+.|.+.   .....    .....   .    ...
T Consensus       103 ~l~V~~~~-~~~~~~~~~~~~~~~~~~g~~v~L~C~~--~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  179 (241)
T 3grw_A          103 TLDVLERS-PHRPILQAGLPANQTAVLGSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE  179 (241)
T ss_dssp             EEEEECCC-CCCCEEEECTTCSEECCTTCCEEEEEEE--ECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSE
T ss_pred             EEEEeccC-CCCceeecCCCccceecCCCEEEEEEEE--ecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecC
Confidence            55554322 21121     112233569999999997  3333344555432   11110    00000   0    001


Q ss_pred             CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeeccccc
Q psy11549        209 DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGAHY  254 (261)
Q Consensus       209 ~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~~~  254 (261)
                      ....|.|.++...|.|.|  +|.|.|..|....+..+.+..+++.+
T Consensus       180 ~~~~L~i~~~~~~d~G~Y--~C~a~N~~g~~~~~~~l~V~~~p~~~  223 (241)
T 3grw_A          180 ADVRLRLANVSERDGGEY--LCRATNFIGVAEKAFWLSVHGPRAAE  223 (241)
T ss_dssp             EEEEEEECSCCGGGCEEE--EEEEECSSCEEEEEEEEEC-------
T ss_pred             CceEEEECcCCcccCcEE--EEEEecCcceEEEEEEEEecCCCCCC
Confidence            235689999999999999  99999999998888888776554443

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.80  E-value=6.3e-18  Score=122.67  Aligned_cols=174  Identities=14%  Similarity=0.194  Sum_probs=113.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc---------ccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL---------DVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      +.+.+|+.+.|.|.+.+.|.+ .+.|++++.....         .....++....  ..|.|.++..+|+|.|+|.+.+.
T Consensus        11 ~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~L~i~~v~~~D~G~Y~C~~~~~   87 (212)
T 1f97_A           11 VQVPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTFSS--SGITFSSVTRKDNGEYTCMVSEE   87 (212)
T ss_dssp             EEEETTCCEEEECEEESCSSE-EEEEEEEETTEEEEEEETTEECGGGTTTEEEET--TEEEESCCCGGGCEEEEEEEEET
T ss_pred             eEEEcCCCEEEEeEeCCCCCc-EEEEEECCCceeeEEecCCcccccccCcEEeec--eeEEEcccCcccCeEEEEEEEcc
Confidence            678899999999999987766 8999997743100         01122333333  47999999999999999999998


Q ss_pred             CceEEeeEEEEEEeCCCCCCCCc-ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCC-ccceeE----------EEec
Q psy11549        140 IGTQVTPCLYQVVLAGKPQPPQN-CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSAS-DLNLLV----------NLTN  207 (261)
Q Consensus       140 ~~~~~~~~~~~v~~~~~p~~p~~-~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~-~~~~~~----------~~~~  207 (261)
                      .|.......+.+.+..+|..+.. .......|+.+.|.|..  ..+.|..-..|++... ......          ....
T Consensus        88 ~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~--~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~  165 (212)
T 1f97_A           88 GGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSE--HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID  165 (212)
T ss_dssp             TSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEEC--SCCBSCCEEEEEETTEESBC-----CBSCSSSCEEEC
T ss_pred             CCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEc--ccCcCCCEEEEEeCCcccccccccccccccCceeEec
Confidence            76333333555666566654321 11123469999999993  2444433334444433 221100          1122


Q ss_pred             CCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       208 ~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      .....|.|.+++.+|.|.|  +|.|.|..|....+..+.+..
T Consensus       166 ~~~~~L~i~~~~~~d~G~Y--~C~a~n~~g~~~~s~~~~l~V  205 (212)
T 1f97_A          166 PKSGDLIFDPVTAFDSGEY--YCQAQNGYGTAMRSEAAHMDA  205 (212)
T ss_dssp             TTTCCEEESSCCGGGCEEE--EEEEECSSSCCEECCCEEEEE
T ss_pred             CCCceEEEEecChhhCcEE--EEEEccccCCccccceEEEEE
Confidence            3457899999999999999  999999999885555554443

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.80  E-value=1e-19  Score=146.88  Aligned_cols=213  Identities=11%  Similarity=0.058  Sum_probs=127.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCc--ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCcee
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGE--ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PPARSF   92 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~--~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~   92 (261)
                      .+|.|.+++.+|+|.|+|.+.|..+.  .....+.|.|..    +|.+...... ..+..|+.+.|.|.+.+. |.+..+
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v  157 (444)
T 1igt_B           79 LYLQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTL  157 (444)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCC-SSCCCSSCEEEEEEEEEEBSSCCEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEeccc-ccCCCCCcEEEEEEEcceeCCCcEE
Confidence            48999999999999999999987654  223446777763    3333211111 123689999999999986 555589


Q ss_pred             EEEEcCCccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE-------------eCCC
Q psy11549         93 KWKFNNSGETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV-------------LAGK  156 (261)
Q Consensus        93 ~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~-------------~~~~  156 (261)
                      .|++++....... .......+   ..+.|.|.++..+| |.|+|.|.|..+.......+.+.             +...
T Consensus       158 ~W~~~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  235 (444)
T 1igt_B          158 TWNSGSLSSGVHT-FPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNL  235 (444)
T ss_dssp             EEGGGTBCTTEEE-CCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCC
T ss_pred             EEecCCCCCCeEe-cCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCccc
Confidence            9998764311100 00000011   12468899999889 99999999988765432222210             0011


Q ss_pred             CCCCCcceEE-------eecCCeEEEEeecCCCCCC--Ce-EEEEEEEeCCccce---e-EEEec----CCCCcEEEcCC
Q psy11549        157 PQPPQNCSVR-------NETTSSVHISCTPGYDGGL--PQ-TFTLELYSASDLNL---L-VNLTN----LDTPAFTLEDL  218 (261)
Q Consensus       157 p~~p~~~~v~-------~~~~~~~~l~c~~~~~~~~--p~-~~~~~~~~~~~~~~---~-~~~~~----~~~~~~~i~~~  218 (261)
                      ..+|. +.+.       ...|+.++|.|.+  .+..  |. ..+.|++.......   . .....    .....|.|.++
T Consensus       236 ~~~p~-v~~~~p~~~~~~~~G~~~~L~C~~--~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v  312 (444)
T 1igt_B          236 LGGPS-VFIFPPKIKDVLMISLSPIVTCVV--VDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQ  312 (444)
T ss_dssp             CCCCE-EEEECCCHHHHHCTTSCCEEEEEE--EEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHH
T ss_pred             CCCce-EEecCCchhheeecCCCcEEEEEE--eecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHH
Confidence            11121 1111       1459999999997  3332  32 23344444322110   0 01110    01246888888


Q ss_pred             CCCCccEEEEEEEEEcCCCcCC
Q psy11549        219 GLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       219 ~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      +..|+|.|  +|.|.|..|...
T Consensus       313 ~~~d~G~Y--~C~a~n~~~~~~  332 (444)
T 1igt_B          313 DWMSGKEF--KCKVNNKDLPAP  332 (444)
T ss_dssp             HHHTTCEE--EEEEECTTCSSC
T ss_pred             HhccCCcE--EEEEEcCCCCCc
Confidence            88899999  999999999763

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.80  E-value=6.1e-20  Score=133.05  Aligned_cols=137  Identities=22%  Similarity=0.397  Sum_probs=99.9

Q ss_pred             eEEEECCeEEEccCCCCCCEeEEEEEEeCCCc-ceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEE-eeCCCCce
Q psy11549         14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAV-EADPPARS   91 (261)
Q Consensus        14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~-~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~   91 (261)
                      +....+.+|.|.+++.+|+|.|+|.+.+..|. ..+..+.|.|..+|........ ..+..|+.+.|.|.+ .+.|.+ .
T Consensus        62 r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~-~  139 (209)
T 1nbq_A           62 RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIP-SSATIGNRAVLTCSEQDGSPPS-E  139 (209)
T ss_dssp             TCEEETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCB-SEEETTSCEEECCCCCSCBSCC-E
T ss_pred             ceEeeccEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccc-cceecCCEEEEEEeCCCCCCCc-e
Confidence            34445689999999999999999999998663 2356788888888876544333 457799999999997 777777 8


Q ss_pred             eEEEEcCCccccccCC------ceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         92 FKWKFNNSGETLDVGS------ERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        92 ~~W~~~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      +.|++++.........      ..+........|.|.++..+|.|.|+|.|.|..|....+..+.+.
T Consensus       140 v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~  206 (209)
T 1nbq_A          140 YTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME  206 (209)
T ss_dssp             EEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCE
T ss_pred             eEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEE
Confidence            9999987532211110      122333344579999999999999999999999887443344443

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.80  E-value=1.4e-18  Score=124.79  Aligned_cols=169  Identities=16%  Similarity=0.133  Sum_probs=101.3

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+.+|++++|.|.+.+.+.  .+.|++++.....  .............|.|.++..+|+|.|+|.+.|..+....+..+
T Consensus        15 ~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~--~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~   90 (196)
T 2d3v_A           15 VISRGNSVTIRCQGTLEAQ--EYRLVKEGSPEPW--DTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPL   90 (196)
T ss_dssp             EEETTCCEEEEEECCTTCC--EEEEEETTCSSCS--EEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCE
T ss_pred             cccCCCeEEEEEeCCCCCc--EEEEEECCCCCCc--ccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccE
Confidence            5679999999999987654  8999998753211  11111123345689999999999999999999877643322234


Q ss_pred             EEEeCCCCCCCCcc---eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-eeEE--Eec--CCCCcEEEcCCCCC
Q psy11549        150 QVVLAGKPQPPQNC---SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLVN--LTN--LDTPAFTLEDLGLD  221 (261)
Q Consensus       150 ~v~~~~~p~~p~~~---~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-~~~~--~~~--~~~~~~~i~~~~l~  221 (261)
                      .+.+...+.+|...   ......|+.++|.|.+  . +.|..+.| +++..... ....  ...  .....|.|.+++.+
T Consensus        91 ~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~--~-~~p~~~~W-~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  166 (196)
T 2d3v_A           91 ELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS--R-LRFDRFIL-TEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPS  166 (196)
T ss_dssp             EEEEECSSCCCEEEC-----------CEEEEEE--S-SCCSEEEE-EEC---CCEEEEECEECTTSCEEEEEECCCCBTT
T ss_pred             EEEecCCCCCCeEEccCCccccCCCcEEEEEEc--C-CCCCEEEE-EccCCcccccccccccccCCCceeEEEeeecCcc
Confidence            44444432222110   1123459999999997  3 33444444 44433321 1111  111  12268999999999


Q ss_pred             CccEEEEEEEEEcCCC---cCCceeeeeee
Q psy11549        222 GTVLMRVVISGVNAKG---RSLPVIWDDFS  248 (261)
Q Consensus       222 ~~~~Y~~~~~a~N~~G---~~~~s~~~~~~  248 (261)
                      |+|.|  +|.|.|..+   .+..|..+++.
T Consensus       167 D~G~Y--~C~a~n~~~~~~~s~~S~~~~l~  194 (196)
T 2d3v_A          167 HRWML--RCYGSRRHILQVWSEPSDLLEIP  194 (196)
T ss_dssp             BCEEE--EEEEEETTEEEEECCCCCCEEEC
T ss_pred             cCeeE--EEEEEccCCCCccCCCCccEEEE
Confidence            99999  999999875   46677766654

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.80  E-value=2.1e-17  Score=126.76  Aligned_cols=223  Identities=13%  Similarity=0.188  Sum_probs=137.0

Q ss_pred             CCCCeeccCCCCceEEEEC--CeEEEccCCCCCCEeEEEEEEeCCCcc--eeeeEEEEEEeeceeecCceeEEEeeCCCc
Q psy11549          1 MAGGIPLAHNTSARIILSN--QSLVLQKVSRQSAGTYKCSAINTKGEA--TSNQLKLRVKYAPICKSDRIVIVGASRSES   76 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~--~~L~i~~~~~~D~G~Y~C~~~~~~~~~--~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~   76 (261)
                      +|||++|..+  ++.+..+  ++|.|.++.+.| |.|+|.|.+. |..  ....+.|.|..+|.              ..
T Consensus        46 ~~~g~~i~~~--~~~~~~~~~~~L~i~~~~~~~-g~Y~C~a~~~-g~~~~~~~~~~l~v~~~P~--------------~P  107 (303)
T 1i1r_A           46 KTNHFTIPKE--QYTIINRTASSVTFTDIASLN-IQLTCNILTF-GQLEQNVYGITIISGLPPE--------------KP  107 (303)
T ss_dssp             EETTEECCGG--GCEEEETTEEEEEECSCCCSE-EEEEEEEEET-TTEEEEEEEEEEEEECCCC--------------CC
T ss_pred             EECCEECChh--heeeeCCcEEEEEEcCcCCCc-eEEEEecccC-CCcceEEEEEEEeccCCCC--------------CC
Confidence            3788888543  3334443  479999999985 9999999774 332  12234444544432              22


Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCcccc---c-------cCCceE-EeCCceeEEEEecC-CCCcCeEEEEEEEcCCceEE
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETL---D-------VGSERF-SSGSRGSMLRYTPV-TELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~---~-------~~~~~~-~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~~~~~  144 (261)
                      ..|.|........ .+.|.........   .       ...... ........+.+.++ .....+.|++.|.|..|...
T Consensus       108 ~~l~~~~~~~~~v-~l~W~~~~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~  186 (303)
T 1i1r_A          108 KNLSCIVNEGKKM-RCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT  186 (303)
T ss_dssp             EEEEEEEETTSCC-EEEEECCSCCSSCCEEEEEEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEE
T ss_pred             eeeEEEECCCCcE-EEEccCCCCCCCCcCEEEEEEecCCCCccCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCcc
Confidence            2334443332222 4444422111000   0       000000 01222346788888 78888899999999988765


Q ss_pred             ee-EEEEEEeCCCCCCCCcceEEee--cCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeEEEe-----cCCCCcEEE
Q psy11549        145 TP-CLYQVVLAGKPQPPQNCSVRNE--TTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLT-----NLDTPAFTL  215 (261)
Q Consensus       145 ~~-~~~~v~~~~~p~~p~~~~v~~~--~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i  215 (261)
                      .. ..+......+|.+|.++.+...  ....+.|+|.++...+.+ ..|.+.|+..+..  .|...     ......+.|
T Consensus       187 s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~~~~~--~w~~~~~~~~~~~~~~~~l  264 (303)
T 1i1r_A          187 SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAS--TWSQIPPEDTASTRSSFTV  264 (303)
T ss_dssp             CCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECCGGGGTSCEEEEEEEEETTCS--SCEECCGGGGCSCCSEEEE
T ss_pred             cCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCCCCCCcccEEEEEEEEeCCCC--CceEEccccCCCceeEEEe
Confidence            32 1222222247888888877643  568999999976544444 5699999887643  33222     234578999


Q ss_pred             cCCCCCCccEEEEEEEEEcCCCcCCceeeee
Q psy11549        216 EDLGLDGTVLMRVVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       216 ~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~  246 (261)
                      .+  |.+++.|+|+|.|.|..|.+.+|.+.+
T Consensus       265 ~~--L~p~t~Y~~rV~A~n~~G~G~~S~wS~  293 (303)
T 1i1r_A          265 QD--LKPFTEYVFRIRCMKEDGKGYWSDWSE  293 (303)
T ss_dssp             CS--CCTTCEEEEEEEEEETTSCSCCCCCCC
T ss_pred             CC--CCCCCEEEEEEEeccCCCCCCcCCCCC
Confidence            99  999999999999999999877776554

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.80  E-value=3.5e-18  Score=131.05  Aligned_cols=182  Identities=14%  Similarity=0.117  Sum_probs=121.5

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE---eCCceeEEEEecCCCCcCeEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS---SGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +|.+...+.. +.+..|+.+.|.|.+.+.|.+ .+.|++++..  +.....++.   ..+....|.|.++..+|+|.|+|
T Consensus         4 ~P~~~~~p~~-~~v~~G~~v~l~C~~~g~p~~-~v~W~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C   79 (305)
T 2nzi_A            4 APHFKEELRN-LNVRYQSNATLVCKVTGHPKP-IVKWYRQGKE--IIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV   79 (305)
T ss_dssp             CCEEEECCCC-EEECTTCCEEEEEEEECSSCC-EEEEEETTEE--CCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEE
T ss_pred             CCeeeecccc-eEEeCCCcEEEEEEEeCCCCC-eEEEEECCEE--cccCCCeEEEEECCCCEEEEEEccCChhhCeEEEE
Confidence            4555444444 778899999999999998887 8999998743  222222322   24455689999999999999999


Q ss_pred             EEEcCCceEEeeEEEEEEeCCCCC--CCCc----ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc--eeE-EE
Q psy11549        135 AAQNAIGTQVTPCLYQVVLAGKPQ--PPQN----CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLV-NL  205 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~v~~~~~p~--~p~~----~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--~~~-~~  205 (261)
                      .+.|..|.......+.|.  .+|.  .|..    ..+....|..+.|.|.+  . +.|.....|++......  ..+ ..
T Consensus        80 ~a~n~~g~~~~~~~l~V~--~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~-g~p~p~i~W~~~~~~~~~~~~~~~~  154 (305)
T 2nzi_A           80 RATNQGGSVSGTASLEVE--VPAKIHLPKTLEGMGAVHALRGEVVSIKIPF--S-GKPDPVITWQKGQDLIDNNGHYQVI  154 (305)
T ss_dssp             EEEETTEEEEEEEEEEEC--EEEEECCCHHHHSSCCEEEETTCCEEEEEEE--E-EESCCEEEEEESSSBCCSSSSCEEE
T ss_pred             EEEcCCCCccceEEEEEe--cCCccCCCccccccccEEecCCCEEEEEEEE--C-CCCCCEEEEEECCEECCCCCcEEEE
Confidence            999998876664444443  3332  2211    12334569999999997  3 33433334444432211  111 11


Q ss_pred             ecCCCCcEEEcC-CCCCCccEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        206 TNLDTPAFTLED-LGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       206 ~~~~~~~~~i~~-~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      .......+.|.+ +...+.|.|  +|.|.|..|....+..+.+...
T Consensus       155 ~~~~~~~l~i~~~~~~~d~G~Y--~C~a~N~~G~~~~~~~l~v~~~  198 (305)
T 2nzi_A          155 VTRSFTSLVFPNGVERKDAGFY--VVCAKNRFGIDQKTVELDVADV  198 (305)
T ss_dssp             ECSSEEEEEETTCCCSTTCEEE--EEEEEETTEEEEEEEEEEEEBC
T ss_pred             EcCCceEEEEecCCccCccEEE--EEEEEeCCCceeeEEEEEEecC
Confidence            222346788888 999999999  9999999999888777776543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.80  E-value=2e-18  Score=122.60  Aligned_cols=140  Identities=18%  Similarity=0.328  Sum_probs=98.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~   80 (261)
                      +|||++|......   .....|.|.  +.+|+|.|+|.+.|..    +..+.|.|..+|.+...... ..+..|+.+.|.
T Consensus        35 ~k~~~~l~~~~~~---~~~~~l~i~--~~~d~G~Y~C~~~n~~----~~~~~l~V~~~P~~~~~~~~-~~~~~g~~~~l~  104 (184)
T 3b5h_A           35 LKGGVVLKEDALP---GQKTEFKVD--SDDQWGEYSCVFLPEP----MGTANIQLHGPPRVKAVKSS-EHINEGETAMLV  104 (184)
T ss_dssp             ESSSEEEECTTCC---CSEEEEEEC--GGGCCEEEEEEEESTT----SCEEEEEECCSCCCEESCSE-EEECTTSCEEEE
T ss_pred             EeCCEEeeccccc---CCcEEEEEe--chhhCeEEEEEEECCc----CcEEEEEEecCCceeecCCC-cEEcCCCcEEEE
Confidence            4778877533211   112256666  6899999999999832    45678999988887765544 568899999999


Q ss_pred             EEEeeCCCCceeEEEE---cCCccccccCCceEE--eCCceeEEEEecCC-CCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         81 CAVEADPPARSFKWKF---NNSGETLDVGSERFS--SGSRGSMLRYTPVT-ELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        81 C~~~~~~~~~~~~W~~---~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      |.+.+.|++..+.|++   ++..........++.  .....+.|.|.++. .+|+|.|+|.|.|..|.......+.
T Consensus       105 C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~  180 (184)
T 3b5h_A          105 CKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR  180 (184)
T ss_dssp             EECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEE
Confidence            9999998433899999   442211111123332  23445689999999 8999999999999999877754433

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.80  E-value=3.4e-18  Score=122.61  Aligned_cols=173  Identities=20%  Similarity=0.231  Sum_probs=113.6

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCccccccCC---ceEEeCCc-------eeEEEEecCCCC
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETLDVGS---ERFSSGSR-------GSMLRYTPVTEL  127 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~-------~~~l~i~~~~~~  127 (261)
                      |.+...+.. ..+..|+.+.|.|.+. +.|.+ .+.|++++..  +....   .++.....       ...|.|.++..+
T Consensus         3 ~~~~~~p~~-~~v~~G~~v~l~C~~~~~~p~~-~v~W~~~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   78 (195)
T 2c5d_C            3 SPFVGNPGN-ITGARGLTGTLRCQLQVQGEPP-EVHWLRDGQI--LELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLS   78 (195)
T ss_dssp             CSEEECCCC-EEECTTCCEEEEEEEEEESSCC-CCEEEETTEE--CCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCST
T ss_pred             CeeccChhh-eEEecCCcEEEecccccCCCCc-EEEEEECCEE--cccCCCCceEEEEccccccceeeccEEEEEecccc
Confidence            444444444 6788999999999999 87777 8999997742  22221   12222221       458999999999


Q ss_pred             cCeEEEEEEEcCCceEEeeEEEEEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE
Q psy11549        128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV  203 (261)
Q Consensus       128 d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~  203 (261)
                      |+|.|+|.+.+..+..... .+.+.+..+|.   .|...  ....|+.+.|.|.+  .+ .|.. -..|++.........
T Consensus        79 d~G~Y~C~~~~~~~~~~~~-~~~l~V~~~p~~~~~~~~~--~~~~g~~~~l~C~~--~g-~p~p~~v~W~~~~~~~~~~~  152 (195)
T 2c5d_C           79 DTGQYQCLVFLGHQTFVSQ-PGYVGLEGLPYFLEEPEDR--TVAANTPFNLSCQA--QG-PPEPVDLLWLQDAVPLATAP  152 (195)
T ss_dssp             TCEEEEEEEEETTEEEECC-CEEEEECCSCEEEECCCCE--EECTTCCEEEEEEE--EC-SSCCCEEEEEESSCBSSSST
T ss_pred             CCcEEEEEEEeCCCceecc-cEEEEEecCCeEEcCCCcE--EEcCCCEEEEEeEC--CC-CCCCCEEEEEECCEeccCCC
Confidence            9999999999987654332 34555555553   33333  33569999999997  33 3433 334444433221110


Q ss_pred             EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCC-ceeeeee
Q psy11549        204 NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL-PVIWDDF  247 (261)
Q Consensus       204 ~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~-~s~~~~~  247 (261)
                      .  ......|.|.+  +.+.|.|  +|.|.|..|... .+..+.+
T Consensus       153 ~--~~~~~~L~i~~--~~d~G~Y--~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          153 G--HGPQRSLHVPG--LNKTSSF--SCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             T--SSCCEEEEECC--CSSCEEE--EEEEEETTEEEECCCEEEEE
T ss_pred             C--cCCCCeEEEcc--cccCceE--EEEEEcCCCceEEEEEEEEE
Confidence            0  02457889999  6689999  999999999775 5666665

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.80  E-value=4e-20  Score=143.17  Aligned_cols=228  Identities=12%  Similarity=0.108  Sum_probs=127.5

Q ss_pred             CCCCeeccCCCCc-eEEEECC------eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE---eeceee-cCceeEE
Q psy11549          1 MAGGIPLAHNTSA-RIILSNQ------SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK---YAPICK-SDRIVIV   69 (261)
Q Consensus         1 ~~ng~~l~~~~~~-~~~~~~~------~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~---~~p~~~-~~~~~~~   69 (261)
                      +|||++|...... .....++      .|.|.++..+|+|.|+|.|.|..+.. ...+.+.+.   ..|.+. .++.. .
T Consensus        46 ~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~p~v~~~~p~~-~  123 (323)
T 2wqr_A           46 LEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTF-EDSTKKCADSNPRGVSAYLSRPSP-F  123 (323)
T ss_dssp             EETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEE-EEEECCCCCSSGGGCEEEECCCCH-H
T ss_pred             EECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCc-ceeeecCCCCCCCCCEEEEcCCCH-H
Confidence            4788888632211 1111233      57788888889999999999976543 222221111   122221 11111 3


Q ss_pred             EeeCCCcEEEEEEEeeCCC-C--ceeEEEEcCCccccccCCceEE--eCC---ceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-A--RSFKWKFNNSGETLDVGSERFS--SGS---RGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~--~~~~W~~~~~~~~~~~~~~~~~--~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .+..|+.+.|.|.+.+.++ +  ..+.|++++. ..+........  ..+   ..+.|.|.++..+|.|.|+|.|.|..+
T Consensus       124 ~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g-~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~  202 (323)
T 2wqr_A          124 DLFIRKSPTITCLVVDLAPSKGTVQLTWSRASG-KPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHL  202 (323)
T ss_dssp             HHHTSSCCEEEEEEEEECCCSSCCEEEEEETTC-CCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             HhccCCeEEEEEEEeccCCCCCceEEEEEECCC-cccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCC
Confidence            4668999999999988654 3  3899999652 22211111100  011   234699999999999999999999764


Q ss_pred             eEEeeEEEEEEeC-CCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccce-eEE----EecCC
Q psy11549        142 TQVTPCLYQVVLA-GKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNL-LVN----LTNLD  209 (261)
Q Consensus       142 ~~~~~~~~~v~~~-~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~-~~~----~~~~~  209 (261)
                      ....  .+.+... ....+|. +.+..     ..|+.++|.|.+  .+..|.. .+.|+++...... ...    .....
T Consensus       203 ~~~~--~~~v~~~~~~~~~P~-v~~~~~~~~~~~g~~~~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~  277 (323)
T 2wqr_A          203 PRAL--MRSTTKTSGPRAAPE-VYAFATPEWPGSRDKRTLACLI--QNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKG  277 (323)
T ss_dssp             SSCE--EEEECCCCSCCBCCE-EEEEECCCCTTCTTEEEEEEEE--EEEBSSCCEEEEEETTEECCGGGEEECCCEECSS
T ss_pred             CCCe--eeEEEccCCCCCCCE-EEEeCCChHHhcCCcEEEEEEe--eeeeCCCcEEEEEECCEECCCCceeecCcccCCC
Confidence            3222  3333221 1112222 11111     128999999997  3334432 3344454322110 010    00111


Q ss_pred             -----CCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        210 -----TPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       210 -----~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                           ...|.|..+..+++|.|  +|.|.|..+.
T Consensus       278 g~~~~~s~L~i~~~~~~d~g~Y--~C~a~n~~~~  309 (323)
T 2wqr_A          278 SGFFVFSRLEVTRAEWEQKDEF--ICRAVHEAAS  309 (323)
T ss_dssp             SSEEEEEEEEEEHHHHHHCCCE--EEEEECTTST
T ss_pred             CcEEEEEEEEEChHHccCCCEE--EEEEEeCCCC
Confidence                 13577777667788999  9999999986

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.80  E-value=8.3e-19  Score=123.66  Aligned_cols=121  Identities=12%  Similarity=0.158  Sum_probs=88.5

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEc
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN   97 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~   97 (261)
                      .+++|.|.+++.+|+|.|+|.+.|..+   +..+.|.|..++.......  ..+..|+.+.|.|.+.+.+++..+.|+++
T Consensus        52 ~~~~L~i~~~~~~d~G~Y~C~~~n~~~---s~~~~l~V~~~~~~~~~~~--~~~~~g~~~~l~C~~~~~~~~~~~~W~k~  126 (175)
T 1fnl_A           52 QASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPR--WVFKEEDPIHLRCHSWKNTALHKVTYLQN  126 (175)
T ss_dssp             SCSEEEESSCCGGGCEEEEEECSSSCC---CCCEEEEEECSSEEEECSC--SEEETTCCEEEEEEECTTCCCEEEEEEET
T ss_pred             CceEEEEeCCCcccCEEEEEEeeCCcc---cccEEEEEeCCCceeeCCC--ceecCCCCEEEEEEcCCCCCceEEEEEEC
Confidence            356899999999999999999987544   4467888875554443322  34679999999999998877668999998


Q ss_pred             CCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549         98 NSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      +.....         ......|.|.++..+|+|.|+|.|.|..+.... ..+.+.|
T Consensus       127 g~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s-~~~~l~V  172 (175)
T 1fnl_A          127 GKDRKY---------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSS-ETVNITI  172 (175)
T ss_dssp             TEEEEE---------EEECCCEEESSCCGGGCEEEEEEEEETTEEEEC-CCEEEEE
T ss_pred             CeEccC---------CCCCCEEEEcccChhhCeEEEEEEEcCCCCccC-ccEEEEE
Confidence            742110         112346999999999999999999997654332 2344444

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.80  E-value=2.8e-18  Score=123.37  Aligned_cols=170  Identities=12%  Similarity=0.119  Sum_probs=105.9

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC-ceEEeeEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI-GTQVTPCL  148 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~~~~~  148 (261)
                      .+..|++++|.|.+.+.+.  .+.|++++..........  ........|.|.++..+|+|.|+|.+.|.. +....+..
T Consensus        15 ~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~~~--~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~   90 (198)
T 1ugn_A           15 VITQGSPVTLRCQGGQETQ--EYRLYREKKTAPWITRIP--QELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDP   90 (198)
T ss_dssp             EEETTCCEEEEEECCTTCC--CEEEEESSSCCHHHHTSC--HHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCC
T ss_pred             cccCCCcEEEEEEecCCCc--EEEEEECCcccccccccc--ccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCcc
Confidence            5679999999999988765  699999875322111110  111223479999999999999999999977 53222223


Q ss_pred             EEEEeCCCCCCCCcc---eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc-ceeEE--Ee--cCCCCcEEEcCCCC
Q psy11549        149 YQVVLAGKPQPPQNC---SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL-NLLVN--LT--NLDTPAFTLEDLGL  220 (261)
Q Consensus       149 ~~v~~~~~p~~p~~~---~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~-~~~~~--~~--~~~~~~~~i~~~~l  220 (261)
                      +.+.|...+.+|...   ......|+.++|.|.+  .+. +..+.|+ ++.... .....  ..  ......|.|.+++.
T Consensus        91 ~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~--~~~-~~~v~W~-k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~  166 (198)
T 1ugn_A           91 LELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDS--QVA-FDGFILC-KEGEDEHPQCLNSQPHARGSSRAIFSVGPVSP  166 (198)
T ss_dssp             EEEEEECSSCCCEEEEESCSEEETTCCEEEEEEC--SSC-CSEEEEE-EC------CEEEC------CCEEEEEECCCCT
T ss_pred             EEEEEcccccCCccccCCccccCCCCcEEEEEec--CCC-CcEEEEE-ECCCccCCccccccccCCCcceeEEEecccCc
Confidence            444444433222210   0122469999999997  444 5555554 433222 11111  11  11236899999999


Q ss_pred             CCccEEEEEEEEEcCCC---cCCceeeeeeee
Q psy11549        221 DGTVLMRVVISGVNAKG---RSLPVIWDDFSM  249 (261)
Q Consensus       221 ~~~~~Y~~~~~a~N~~G---~~~~s~~~~~~~  249 (261)
                      +|.|.|  +|.|.|..+   ++..|..+++..
T Consensus       167 ~D~G~Y--~C~a~n~~~~~~~s~~S~~~~l~V  196 (198)
T 1ugn_A          167 SRRWWY--RCYAYDSNSPYEWSLPSDLLELLV  196 (198)
T ss_dssp             TSCEEE--EEEEECTTSTTEECCCCCCEEEEE
T ss_pred             ccCeEE--EEEEEeCCCCccccCcCceEEEEe
Confidence            999999  999999976   556677766654

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.79  E-value=1.3e-17  Score=135.62  Aligned_cols=209  Identities=14%  Similarity=0.137  Sum_probs=125.6

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCc-----ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CC-
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGE-----ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PP-   88 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~-----~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-   88 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+.     .....+.|.|..    +|.+.....  ..+..|+.+.|.|.+.+. |. 
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~--~~~~~g~~v~L~C~~~g~~P~~  157 (475)
T 1iga_A           80 AYMGLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSL--CSTQPDGNVVIACLVQGFFPQE  157 (475)
T ss_pred             EEEEECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCc--cccCCCCeEEEEEEEeeecCCC
Confidence            38999999999999999999987652     112345777763    343332221  123589999999999987 44 


Q ss_pred             CceeEEEEcCCccccccCCceEE-eCCc----eeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCC--------
Q psy11549         89 ARSFKWKFNNSGETLDVGSERFS-SGSR----GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG--------  155 (261)
Q Consensus        89 ~~~~~W~~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~--------  155 (261)
                      +..+.|++++....... ..... ..+.    .+.|.|..+..+|.|.|+|.|.|..+.. ....+.+.+..        
T Consensus       158 p~~v~W~~~~~~~~~~~-~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~-~~~~v~l~V~~~~~~~~~~  235 (475)
T 1iga_A          158 PLSVTWSESGQGVTARN-FPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS-QDVTVPCPVPSTPPTPSPS  235 (475)
T ss_pred             ceEEEEcCCCcccceEe-CCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc-eeeeEecccccCccccccc
Confidence            45899988663211100 00000 0111    2357888888899999999999987632 22233332211        


Q ss_pred             ----------CCC----CCCcceEEeecCCeEEEEeecCCCCCCC---eEEEEEEEeCCccceeE---EEec-----CCC
Q psy11549        156 ----------KPQ----PPQNCSVRNETTSSVHISCTPGYDGGLP---QTFTLELYSASDLNLLV---NLTN-----LDT  210 (261)
Q Consensus       156 ----------~p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~p---~~~~~~~~~~~~~~~~~---~~~~-----~~~  210 (261)
                                +|.    +|....+  ..|+.+.|.|.+  .+..|   ..+.|  .. .......   ....     ...
T Consensus       236 ~~~~~~~~~~~p~v~~~~p~~~~~--~~G~~v~L~C~~--~g~~p~~~~~i~W--~~-~~~~~~~~~~~~~~~~g~~~~~  308 (475)
T 1iga_A          236 TPPTPSPSCCHPRLSLHRPALEDL--LLGSEANLTCTL--TGLRDASGVTFTW--TP-SSGKSAVQGPPERDLCGCYSVS  308 (475)
T ss_pred             ccccCCCCCCCcEEEEcCCChHHh--ccCCceEEEEEE--EcccCCCceEEEE--CC-CCcCCccccCceECCCCCEEEE
Confidence                      111    1111111  459999999997  34334   34444  22 2111000   0000     012


Q ss_pred             CcEEEcCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549        211 PAFTLEDLGLDGTVLMRVVISGVNAKGRSLP  241 (261)
Q Consensus       211 ~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~  241 (261)
                      ..|.|.+++..|+|.|  +|.|.|..|....
T Consensus       309 ~~L~I~~~~~~d~G~Y--~C~a~n~~~~~~~  337 (475)
T 1iga_A          309 SVLPGCAEPWNHGKTF--TCTAAYPESKTPL  337 (475)
T ss_pred             EEEEEchHHhccCCcE--EEEEEcCCCCCce
Confidence            4588999999999999  9999999997643

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.79  E-value=1.1e-18  Score=123.08  Aligned_cols=125  Identities=14%  Similarity=0.104  Sum_probs=89.0

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcC
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNN   98 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~   98 (261)
                      +++|.|.+++.+|+|.|+|.+.|..+   +..+.|.|..++.......  ..+..|+.+.|.|.+.+.++...+.|++++
T Consensus        50 ~~~L~i~~v~~~d~G~Y~C~~~~~~~---s~~~~l~V~~~~~~~~~~~--~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g  124 (176)
T 1f2q_A           50 NSSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQASA--EVVMEGQPLFLRCHGWRNWDVYKVIYYKDG  124 (176)
T ss_dssp             SSEEEECSCCGGGCEEEEEECTTSSC---CCCEEEEEECSSEEEEESC--SEEETTSCEEEEEEEGGGCCEEEEEEEETT
T ss_pred             ceEEEEeccceecCEEEEEEcCCccc---cccEEEEEeCcceeecCCc--ceeeCCCCEEEEEEecCCCCceEEEEEECC
Confidence            56999999999999999999987554   3456788875444332222  346799999999999654443489999977


Q ss_pred             CccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549         99 SGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      .....         ......|.|.++..+|+|.|+|.|.|..+.... ..+.+.+..+|.
T Consensus       125 ~~~~~---------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s-~~~~l~V~~~p~  174 (176)
T 1f2q_A          125 EALKY---------WYENHNISITNATVEDSGTYYCTGKVWQLDYES-EPLNITVIKAPR  174 (176)
T ss_dssp             EECCS---------CCCSSEEEESSCCGGGCEEEEEEEEETTEEEEC-CCEEEEEECSCC
T ss_pred             EEEee---------ecCCCeEEECCCCcccCEEEEEEEEeCCcceEe-cCEEEEEecCCC
Confidence            42211         112347999999999999999999997444332 245566655553

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.79  E-value=6.8e-19  Score=127.00  Aligned_cols=124  Identities=15%  Similarity=0.214  Sum_probs=91.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      .+|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|..++..  +......+..|+.+.|.|.+.+.|.| .+.|++++.
T Consensus        67 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~--p~~~~~~~~~g~~v~l~C~~~g~P~p-~v~W~~~~~  142 (202)
T 3bp6_B           67 ALFHIPSVQVRDSGQYRCLVICGAAWD-YKYLTVKVKASYMR--IDTRILEVPGTGEVQLTCQARGYPLA-EVSWQNVSV  142 (202)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCCC--EEEEEEECTTTCCEEEEEEEEEBSCC-EEEETTCCS
T ss_pred             eEEEECCCCHHHCcEEEEEEEeCCCcc-eEEEEEEecCCCCc--ccEEEEecCCCCeEEEEEEccccCCc-eEEEEeCCC
Confidence            589999999999999999999988766 66788888765421  11221356789999999999998887 899998664


Q ss_pred             ccccccCCceE-EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549        100 GETLDVGSERF-SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus       100 ~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      .  .  ..... ...+....+.+..+..+|.|.|+|.|.|..|.......+.+
T Consensus       143 ~--~--~~~~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v  191 (202)
T 3bp6_B          143 P--A--NTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP  191 (202)
T ss_dssp             C--C--EEEEEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC
T ss_pred             C--c--cCceeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEe
Confidence            2  1  11111 12233345677788899999999999999998777544433

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.79  E-value=6.7e-18  Score=130.07  Aligned_cols=244  Identities=13%  Similarity=0.053  Sum_probs=135.8

Q ss_pred             CCCCeeccCCCCceEEEEC---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEee-CCCc
Q psy11549          1 MAGGIPLAHNTSARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGAS-RSES   76 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~-~g~~   76 (261)
                      +|||++|.. ++.+.+..+   ++|.|.+++..|+|.|+|.+.+..+.. ...+.|.|..+|...  ........ ....
T Consensus        40 ~~~g~~l~~-~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~~-~~~~~l~v~~~P~~P--~~l~c~~~~~~~~  115 (313)
T 2d9q_B           40 RLGAELQPG-GRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQI-LDQVELRAGYPPAIP--HNLSCLMNLTTSS  115 (313)
T ss_dssp             ESSSCBCTT-CEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEEE-EEEEEEEECCCCCCC--EEEEEEEETTTTE
T ss_pred             EeCCEECCc-cceEEEecCeEEEEEEEeccCCCccceEEeeecCCCcee-EEEEEEccCCCCCCC--ccceeeECCCCcc
Confidence            368887742 211112222   469999999999999999886544333 455677776655321  11111121 1234


Q ss_pred             EEEEEEEeeCCC-CceeE--EEEcCCccccccCCceEEe--CCceeEEEEe--cCCCCcCeEEEEEEEcCCceEEee-EE
Q psy11549         77 VDIHCAVEADPP-ARSFK--WKFNNSGETLDVGSERFSS--GSRGSMLRYT--PVTELDYGTLSCAAQNAIGTQVTP-CL  148 (261)
Q Consensus        77 ~~l~C~~~~~~~-~~~~~--W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~--~~~~~d~g~y~C~~~~~~~~~~~~-~~  148 (261)
                      +++.+....... +..+.  +...+.... .........  ........+.  .+.....+.+++.|.|..|..... ..
T Consensus       116 ~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~~~  194 (313)
T 2d9q_B          116 LICQWEPGPETHLPTSFTLKSFKSRGNCQ-TQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLC  194 (313)
T ss_dssp             EEEEEECCSCCSSCCEEEEEEEECCTTSC-SCCCCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCCEE
T ss_pred             EEEEecCCCCCCCceeEEEEEEecCCCcc-cCCcccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCccEE
Confidence            444443322111 11222  111110000 000000000  1112234454  477778888899999999876432 12


Q ss_pred             EEEEeCCCCCCCCcceEEee------cCCeEEEEeecCCCCCCC-eEEEEEEE-eCCccceeE-EEecCCCCcEEEcCCC
Q psy11549        149 YQVVLAGKPQPPQNCSVRNE------TTSSVHISCTPGYDGGLP-QTFTLELY-SASDLNLLV-NLTNLDTPAFTLEDLG  219 (261)
Q Consensus       149 ~~v~~~~~p~~p~~~~v~~~------~~~~~~l~c~~~~~~~~p-~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~i~~~~  219 (261)
                      +.+....+|.+|.++.+...      ....+.|+|.++...+.. ..|.+.|+ ..+...... .........+.|.+  
T Consensus       195 ~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l~Y~v~y~~~~~~~~w~~~~~~~~~~~~~~l~~--  272 (313)
T 2d9q_B          195 LDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCG--  272 (313)
T ss_dssp             ECGGGGEECCCCEEEECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECS--
T ss_pred             EehhheeccCcCceeEEEEecccccCCCCeEEEEECCCCCCCceeEEEEEEEccCCCCCCcEEcccccCcceEEEEeC--
Confidence            22222346888887766543      357899999986544443 57999998 444332111 22223346789999  


Q ss_pred             CCCccEEEEEEEEEcCCCcCC---ceeeeeeeecc
Q psy11549        220 LDGTVLMRVVISGVNAKGRSL---PVIWDDFSMSG  251 (261)
Q Consensus       220 l~~~~~Y~~~~~a~N~~G~~~---~s~~~~~~~~~  251 (261)
                      |.+++.|+|+|+|.|..|.+.   +|..+.+++..
T Consensus       273 L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~  307 (313)
T 2d9q_B          273 LLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTE  307 (313)
T ss_dssp             CCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC
T ss_pred             CCCCCeEEEEEEeeECCCCCccCCCCCccceeCCc
Confidence            999999999999999977665   55555665544

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.79  E-value=2.1e-18  Score=132.26  Aligned_cols=146  Identities=21%  Similarity=0.306  Sum_probs=101.4

Q ss_pred             CCCCeeccCCC--CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE---eeceeecCceeEEEeeCCC
Q psy11549          1 MAGGIPLAHNT--SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK---YAPICKSDRIVIVGASRSE   75 (261)
Q Consensus         1 ~~ng~~l~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~---~~p~~~~~~~~~~~~~~g~   75 (261)
                      +|||.++....  .+.....+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.   .+|.+...+.. ..+..|+
T Consensus       143 ~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~-~~v~~G~  221 (304)
T 2yd9_A          143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMS-HEIMPGG  221 (304)
T ss_dssp             EETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCC-BCCCTTC
T ss_pred             EECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCc-eEEcCCC
Confidence            47888886432  234455677999999999999999999999988764444566664   56666544433 5678999


Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCC
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG  155 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~  155 (261)
                      .+.|.|.+.+.|.| .+.|++++..  +.... .  .......|.+.++  +|+|.|+|.|.|..|.....  +.+.|..
T Consensus       222 ~v~l~C~~~g~p~p-~v~W~~~~~~--l~~~~-~--~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~--~~l~V~~  291 (304)
T 2yd9_A          222 NVNITCVAVGSPMP-YVKWMQGAED--LTPED-D--MPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAV--AQITVKS  291 (304)
T ss_dssp             CEEEEEEEEEESCC-EEEEEETTEE--CSCSS-S--CCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEE--EEEC---
T ss_pred             eEEEEEEEeeeCCC-EEEEEECCEE--CCCcc-c--ccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEE--EEEEEec
Confidence            99999999999888 8999998742  21111 1  1123335666665  68999999999999988774  4444444


Q ss_pred             CC
Q psy11549        156 KP  157 (261)
Q Consensus       156 ~p  157 (261)
                      ++
T Consensus       292 ~~  293 (304)
T 2yd9_A          292 LP  293 (304)
T ss_dssp             --
T ss_pred             Cc
Confidence            43

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.79  E-value=2.5e-18  Score=125.41  Aligned_cols=173  Identities=10%  Similarity=0.015  Sum_probs=107.8

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCcee--EEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGS--MLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      .+.+|++++|.|.+.+ +.+ .+.|++++.....  ............  .|.|.++..+|+|.|+|.+.|..+....+.
T Consensus        19 ~v~~G~~vtL~C~~~~-~~~-~~~W~k~g~~~~~--~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~   94 (218)
T 1uct_A           19 VIPLDGSVKIQCQAIR-EAY-LTQLMIIKNSTYR--EIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSD   94 (218)
T ss_dssp             EEETTCCEEEEECCCT-TCS-EEEEEEEETTEEE--ECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECC
T ss_pred             ccCCCCCEEEEEEcCC-CCC-EEEEEECCCcccc--cccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecC
Confidence            4679999999999876 444 8999998743221  111111112233  799999999999999999999765443333


Q ss_pred             EEEEEeCCCCCCCC-----cceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCC
Q psy11549        148 LYQVVLAGKPQPPQ-----NCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDG  222 (261)
Q Consensus       148 ~~~v~~~~~p~~p~-----~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~  222 (261)
                      .+.+.+...+.+|.     ...+  ..|+.++|.|..  .+..+..|. |+++....... .........|.|.+++.+|
T Consensus        95 ~~~l~V~~~~~~P~i~~~p~~~v--~~G~~v~L~C~~--~~~~~~~~~-W~k~g~~~~~~-~~~~~~~~~L~I~~v~~~D  168 (218)
T 1uct_A           95 TLELVVTGLYGKPFLSADRGLVL--MPGENISLTCSS--AHIPFDRFS-LAKEGELSLPQ-HQSGEHPANFSLGPVDLNV  168 (218)
T ss_dssp             CEEEEEECSSCCCEEEESSCSEE--CTTCCCEEEEEC--SSSCCSEEE-EEETTCSSCCS-EEECSSSEEEECCSCCGGG
T ss_pred             CEEEEEcCcccCCEEEeCCCCcc--CCCCCEEEEEeC--CCCCCCEEE-EEECCCccccc-ccCCCccCEEEEccCCccc
Confidence            44555544322221     1222  569999999954  233334444 44544333211 1123345789999999999


Q ss_pred             ccEEEEEEEEEcCC---CcCCceeeeeeeeccccc
Q psy11549        223 TVLMRVVISGVNAK---GRSLPVIWDDFSMSGAHY  254 (261)
Q Consensus       223 ~~~Y~~~~~a~N~~---G~~~~s~~~~~~~~~~~~  254 (261)
                      +|.|  +|.|.|..   ..+..|..+.+...+..+
T Consensus       169 ~G~Y--~C~a~n~~~~~~~s~~S~~~~l~V~g~~~  201 (218)
T 1uct_A          169 SGIY--RCYGWYNRSPYLWSFPSNALELVVTDSIH  201 (218)
T ss_dssp             CEEE--EEEEECTTSTTEECCCCCCEEEEEC----
T ss_pred             CEEE--EEEEEcCCCCCcCCCCCCcEEEEEecCCC
Confidence            9999  99999864   456778877776665443

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.79  E-value=1.9e-18  Score=125.98  Aligned_cols=143  Identities=24%  Similarity=0.358  Sum_probs=101.0

Q ss_pred             CCCCeeccCCC--CceEEEECCeE----EEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee-ceeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHNT--SARIILSNQSL----VLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA-PICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~~--~~~~~~~~~~L----~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~-p~~~~~~~~~~~~~~   73 (261)
                      +|||+++....  ..+....++.+    .|.+++.+|+|.|+|.+.|..|...+..+.|.|... |.+...... ..+..
T Consensus        44 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~-~~~~~  122 (217)
T 2vr9_A           44 FKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKD-TRVAK  122 (217)
T ss_dssp             EETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCC-EEECT
T ss_pred             EECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCc-cEEcC
Confidence            47888886432  23444455555    688999999999999999998876555677877753 333333333 66889


Q ss_pred             CCcEEEEEEE-eeCCCCceeEEEEcCCccccc-----cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         74 SESVDIHCAV-EADPPARSFKWKFNNSGETLD-----VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        74 g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      |+.+.|.|.+ .+.|.+ .+.|++++......     ....++.... ...|.|.++..+|+|.|+|.|.|..|.....
T Consensus       123 g~~v~l~C~~~~g~p~~-~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  199 (217)
T 2vr9_A          123 GETALLECGPPKGIPEP-TLIWIKDGVPLDDLKAMSFGASSRVRIVD-GGNLLISNVEPIDEGNYKCIAQNLVGTRESS  199 (217)
T ss_dssp             TSCEEECCBCCCEESCC-EEEEEETTEEECCCCCC---CCCSEEEET-TTEEEESSCCSTTCEEEEEEEEETTEEEECC
T ss_pred             CCeEEEEEECCCCCCCC-eEEEEECCcCCCcccccccccCCcEEecC-CCcEEEeeCCHHHCeEEEEEEEcccceeccc
Confidence            9999999998 787777 89999987421100     0111222211 2369999999999999999999999987764

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.79  E-value=7e-19  Score=128.36  Aligned_cols=132  Identities=18%  Similarity=0.208  Sum_probs=90.3

Q ss_pred             CCCCeeccCCCCce-EEEECC--eEEEccCCCCCCEeEEEEEEeCCCc-ceeeeEEEEEEe---eceeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHNTSAR-IILSNQ--SLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKY---APICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~~~~~-~~~~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~-~~s~~~~l~V~~---~p~~~~~~~~~~~~~~   73 (261)
                      ||||+++....... ....++  +|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..   +|.+...+.  ..+.+
T Consensus        42 ~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~--~~v~~  119 (218)
T 1uct_A           42 MIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRG--LVLMP  119 (218)
T ss_dssp             EEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSC--SEECT
T ss_pred             EECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCC--CccCC
Confidence            46777664322111 112345  8999999999999999999998653 235567888874   444443322  35679


Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      |++++|.|...+.+.+ .+.|++++....  .  .. ........|.|.++..+|+|.|+|.|.+..
T Consensus       120 G~~v~L~C~~~~~~~~-~~~W~k~g~~~~--~--~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  180 (218)
T 1uct_A          120 GENISLTCSSAHIPFD-RFSLAKEGELSL--P--QH-QSGEHPANFSLGPVDLNVSGIYRCYGWYNR  180 (218)
T ss_dssp             TCCCEEEEECSSSCCS-EEEEEETTCSSC--C--SE-EECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred             CCCEEEEEeCCCCCCC-EEEEEECCCccc--c--cc-cCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence            9999999976666655 899999874321  1  11 123334579999999999999999999853

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.79  E-value=8.4e-19  Score=135.11  Aligned_cols=125  Identities=18%  Similarity=0.224  Sum_probs=94.4

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      .|.|.++..+|+|.|+|.|.|..+.. .+.++.|.|.++|.+.........+..|+.++|.|.+.+.|.|..+.|++++.
T Consensus       178 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~  257 (313)
T 4fqp_A          178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMG  257 (313)
T ss_dssp             EEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTB
T ss_pred             eeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCE
Confidence            58999999999999999999986653 35567788888887653332224466789999999999998886799999874


Q ss_pred             ccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549        100 GETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      .  +  .... ...+  ..|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus       258 ~--l--~~~~-~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          258 P--L--PPFA-VAQG--AQLLIRPVDKPINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             S--C--CTTE-EEET--TEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             E--C--CCce-EEeC--CEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            2  2  1111 1122  369999999999999999999999987775444433

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.79  E-value=7.4e-18  Score=119.47  Aligned_cols=161  Identities=14%  Similarity=0.223  Sum_probs=105.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCc-eEEeCC--ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSGS--RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +..... .+....  ....|.|.++..+|+|.|+|.+.+..+....
T Consensus        12 ~~v~~G~~v~l~C~~~~~p~~-~v~W~k~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~   88 (182)
T 1rhf_A           12 LTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAV--VQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   88 (182)
T ss_dssp             EEEETTCCEEEEEEEESCSSC-CEEEEETTEE--CCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             eEEeCCCcEEEEEEEeCCCCC-eEEEEECCee--cCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEcCCCcEEE
Confidence            678899999999999987777 8999997742  222211 111111  1357999999999999999999998664332


Q ss_pred             eEEEEEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCC
Q psy11549        146 PCLYQVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLD  221 (261)
Q Consensus       146 ~~~~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~  221 (261)
                       ..+.+.+..+|.   .|..  +....|..+.|.|.+  .+..+. .+.|+ +........ .   .....+.|.+  ++
T Consensus        89 -~~~~l~V~~~p~~~~~~~~--~~~~~g~~~~l~C~~--~g~p~p~~v~W~-~~~~~~~~~-~---~~~~~L~i~~--~~  156 (182)
T 1rhf_A           89 -QPVWLTVEGVPFFTVEPKD--LAVPPNAPFQLSCEA--VGPPEPVTIVWW-RGTTKIGGP-A---PSPSVLNVTG--VT  156 (182)
T ss_dssp             -CCEEEEEECSCEEEECCCC--EEECTTCCEEEEEEE--ECSSSCCEEEEE-ETTEECSCS-E---ESSEEEEECC--CS
T ss_pred             -EEEEEEEecCCeEEecCcc--eEecCCCEEEEEeEe--cCCCCCCEEEEE-cCCeECCCC-C---CCceEEEEec--cc
Confidence             134445545553   3333  333569999999997  333333 44443 432221101 1   1457889999  68


Q ss_pred             CccEEEEEEEEEcCCCcCCc-eeeee
Q psy11549        222 GTVLMRVVISGVNAKGRSLP-VIWDD  246 (261)
Q Consensus       222 ~~~~Y~~~~~a~N~~G~~~~-s~~~~  246 (261)
                      +.|.|  +|.|.|..|.... +..+.
T Consensus       157 d~G~Y--~C~a~N~~g~~~s~~~~l~  180 (182)
T 1rhf_A          157 QSTMF--SCEAHNLKGLASSRTATVH  180 (182)
T ss_dssp             SCEEE--EEEEEETTEEEECCCEEEE
T ss_pred             cCeEE--EEEEECCCCCcccceEEEE
Confidence            99999  9999999997643 44443

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.79  E-value=5.7e-18  Score=120.96  Aligned_cols=168  Identities=18%  Similarity=0.162  Sum_probs=110.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEE-cCCccccccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKF-NNSGETLDVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      ..+..|+.+.|.|.+.+.++...+.|++ ++.  .+.....++..   ......|.|.++..+|+|.|+|.+.+..+. .
T Consensus        12 ~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~-~   88 (191)
T 1epf_A           12 GEISVGESKFFLCQVAGDAKDKDISWFSPNGE--KLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGT-Q   88 (191)
T ss_dssp             EEEETTCCEEEEEEECCCSCCCEEEEECTTSC--EECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTE-E
T ss_pred             cEEcCCCCEEEEEECCCCCCCceEEEEeCCCc--cccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEEEcCCCc-c
Confidence            5678999999999999987434899998 553  23223333332   245568999999999999999999998743 2


Q ss_pred             eeEEEEEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--eEEEecCCCCcEEEcCCC
Q psy11549        145 TPCLYQVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--LVNLTNLDTPAFTLEDLG  219 (261)
Q Consensus       145 ~~~~~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~  219 (261)
                      ....+.+.+..+|.   .|...  ....|+.+.|.|.+  .+..+..+ .|++.......  ...........|.|.++.
T Consensus        89 ~~~~~~l~v~~~p~~~~~~~~~--~~~~g~~~~l~C~~--~g~p~~~v-~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  163 (191)
T 1epf_A           89 SEATVNVKIFQKLMFKNAPTPQ--EFKEGEDAVIVCDV--VSSLPPTI-IWKHKGRDVILKKDVRFIVLSNNYLQIRGIK  163 (191)
T ss_dssp             EEEEEEEEEECCSEEEECCSSE--ECCTTSCEEECCEE--ECSSCCEE-EEEETTEEGGGGCCTTEEECTTSCEEETTCC
T ss_pred             eEEEEEEEeecCceEecCCCcE--eecCCCeEEEEEEE--CCCCCCEE-EEEECCEEeeccCCceEEEecCCeEEECCCC
Confidence            22355566555553   33333  33569999999997  33333444 44444322210  001112234589999999


Q ss_pred             CCCccEEEEEEEEEcCCCcCCceeeee
Q psy11549        220 LDGTVLMRVVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       220 l~~~~~Y~~~~~a~N~~G~~~~s~~~~  246 (261)
                      ..|.|.|  +|.|.|..|....+..+.
T Consensus       164 ~~d~G~Y--~C~a~n~~~~~~~~~~i~  188 (191)
T 1epf_A          164 KTDEGTY--RCEGRILARGEINFKDIQ  188 (191)
T ss_dssp             GGGCEEE--EEEEEEGGGTEEEEEEEE
T ss_pred             hhhCEEE--EEEEEEecceeEEEEEEE
Confidence            9999999  999999987554444433

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.79  E-value=9.3e-19  Score=136.64  Aligned_cols=119  Identities=12%  Similarity=0.146  Sum_probs=80.3

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFKW   94 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W   94 (261)
                      .+|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..    +|.+...... ..+..|+.++|.|.+.+. |.+..+.|
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W  156 (344)
T 1za6_B           79 AYVELSSLRSEDTAVYFCTRSLNMAYW-GQGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSW  156 (344)
T ss_dssp             EEEEECSCCGGGCEEEEEEETTTTCEE-CCCEEEEECSSCCBCCEEEEECCS-CTTTSSSEEEEEEEEEEEBSSCCCEEE
T ss_pred             EEEEECCCCcccCEEEEEEEecCccee-cCcEEEEEecCCCCCCeEEEcccc-ccccCCCcEEEEEEEeeEECCCeEEEE
Confidence            389999999999999999998854433 3456788873    3333321111 234689999999999987 43348999


Q ss_pred             EEcCCcccccc------CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         95 KFNNSGETLDV------GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        95 ~~~~~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      ++++.......      ....+.   ..+.|.|..+..+| |.|+|.|.|..+...
T Consensus       157 ~k~g~~~~~~~~~~~~~~~~~~~---~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~  208 (344)
T 1za6_B          157 NSGALTSGVHTFPAVLQSSGLYS---LSSVVTVPSSSLGT-QTYICNVNHKPSNTK  208 (344)
T ss_dssp             TTTTBCTTEEECCCEECTTSCEE---EEEEEEEETTHHHH-BCEEEEEEEGGGTEE
T ss_pred             ecCCccCceeECCCeECCCCCEE---EEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            98774211110      011111   12368898888888 999999999877543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.79  E-value=3.2e-19  Score=128.46  Aligned_cols=164  Identities=15%  Similarity=0.084  Sum_probs=101.5

Q ss_pred             EEeeCCCcEEEEEE---EeeCCCCceeEEEEcCCcccccc----------------CCceEEeCCceeEEEEecCCCCcC
Q psy11549         69 VGASRSESVDIHCA---VEADPPARSFKWKFNNSGETLDV----------------GSERFSSGSRGSMLRYTPVTELDY  129 (261)
Q Consensus        69 ~~~~~g~~~~l~C~---~~~~~~~~~~~W~~~~~~~~~~~----------------~~~~~~~~~~~~~l~i~~~~~~d~  129 (261)
                      +.+..|+.++|.|.   +.+.|.+ .+.|++++.......                .............|.|.++..+|+
T Consensus         3 Vta~~Ge~v~L~C~~~~v~~~p~~-~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            3 VTAFLGERVTLTSYWRRVSLGPEI-EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CEEETTCCEEEEEECSSTTCSTTS-EEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEEEcCCCEEEEeeeeccCCCCCc-EEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            46779999999996   4556666 899999764322100                000112234456899999999999


Q ss_pred             eEEEEEEEcCCceEEeeEEEEEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce----e
Q psy11549        130 GTLSCAAQNAIGTQVTPCLYQVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL----L  202 (261)
Q Consensus       130 g~y~C~~~~~~~~~~~~~~~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~----~  202 (261)
                      |.|+|.|.|..|.......+.|  ..||.   .|...  ....|+.+.|.|.+   .|.|.+.+.|+++.+....    .
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V--~~p~~~~~~~~~~--~v~~g~~~~l~C~~---~G~P~P~v~W~~~~~~~~~~~~~~  154 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSV--VKPLTLSVHSERS--QFPDFSVLTVTCTV---NAFPHPHVQWLMPEGVEPAPTAAN  154 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE--EEEEEEEEEEEEC--CSSCSCCEEEEEEE---EEESCCEEEECCC-----------
T ss_pred             eEEEEEEEcCCCcEEEEEEEEe--cCCceeeecceeE--EEcCCCEEEEEEEc---CCCCCCEEEEEECCeeecCccccc
Confidence            9999999998887776544444  33332   11111  12458999999997   3455443444443322211    1


Q ss_pred             EEEecCCCCc---EEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549        203 VNLTNLDTPA---FTLEDLGLDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       203 ~~~~~~~~~~---~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      ..........   +.|.+++.+|.|.|  +|.|.|.+|..+..
T Consensus       155 ~r~~~~~~g~l~il~i~~v~~~D~G~Y--tC~A~N~~G~a~~v  195 (203)
T 4fa8_A          155 GGVMKEKDGSLSVAVDLSLPKPWHLPV--TCVGKNDKEEAHGV  195 (203)
T ss_dssp             -CCEECTTSCEEEEEEEEECSSCCCCE--EEEEESSSCEEEEE
T ss_pred             ceEEEeCCCCEEEEEECCCCHHHCEEE--EEEEEcCCCEEEEE
Confidence            1111122233   34457788999999  99999999987653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.79  E-value=4e-19  Score=138.88  Aligned_cols=129  Identities=22%  Similarity=0.290  Sum_probs=99.1

Q ss_pred             ECCeEEEccCCCCCCE-eEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEE
Q psy11549         18 SNQSLVLQKVSRQSAG-TYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKF   96 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G-~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~   96 (261)
                      .+++|.|.+++.+|+| .|+|.|.|..|.. +..+.|.|..+|.+     ....+..|+.++|.|.+.+.|.| .+.|++
T Consensus       210 ~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~-~~~~~l~V~~~P~i-----~~~~~~~g~~v~l~C~~~g~P~p-~i~W~~  282 (347)
T 2ifg_A          210 PSLGLTLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNVSFPASV-----QLHTAVEMHHWCIPFSVDGQPAP-SLRWLF  282 (347)
T ss_dssp             SEEEEEEESCCSTTTTCCEEECCEETTEEC-CEEECCCCBEEEEE-----EECCCEESSSEEEEEEEEEESCC-EEEEEE
T ss_pred             ccceEEEeeCChHHCCCeEEEEEEcCCCCE-EEEEEEEEcCCCee-----eeccCccCceEEEEEEeeecCCC-cEEEEe
Confidence            4568999999999999 9999999998877 66788899888876     11334579999999999999888 899999


Q ss_pred             cCCccccccCCce-EEeC-------CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCC
Q psy11549         97 NNSGETLDVGSER-FSSG-------SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP  157 (261)
Q Consensus        97 ~~~~~~~~~~~~~-~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p  157 (261)
                      ++..  +...... ....       .....|.|.++..+|+|.|+|.|.|..|....  .+.+.|..+|
T Consensus       283 ~g~~--l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~--~~~l~V~~~P  347 (347)
T 2ifg_A          283 NGSV--LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA--SIMAAFMDNP  347 (347)
T ss_dssp             TTEE--CCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEE--EEEECSCCCC
T ss_pred             CCEE--CCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceee--EEEEEecCCC
Confidence            8742  2211111 1111       12457999999999999999999999998766  5556665554

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.78  E-value=5.7e-18  Score=123.03  Aligned_cols=174  Identities=15%  Similarity=0.202  Sum_probs=115.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCC---CceeEEEEcCCcc--------------ccc----cCCceEEeCC-----ceeEEEEe
Q psy11549         69 VGASRSESVDIHCAVEADPP---ARSFKWKFNNSGE--------------TLD----VGSERFSSGS-----RGSMLRYT  122 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~--------------~~~----~~~~~~~~~~-----~~~~l~i~  122 (261)
                      +.+.+|+.+.|.|.+.+.+.   ...+.|++.+...              ...    ....++....     ....|.|.
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~   89 (214)
T 3jz7_A           10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVT   89 (214)
T ss_dssp             EEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEEC
T ss_pred             EEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEc
Confidence            67889999999999998763   2389999843211              110    0012222222     35579999


Q ss_pred             cCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcce-EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce
Q psy11549        123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCS-VRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL  201 (261)
Q Consensus       123 ~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~-v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~  201 (261)
                      ++..+|+|.|+|.+.+..+....  .+.+.|..+|..+.... .....|..+.|.|.+  ..+.|.....|++.......
T Consensus        90 ~v~~~D~G~Y~C~~~~~~~~~~~--~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~--~~g~p~~~v~W~~~~~~~~~  165 (214)
T 3jz7_A           90 NLQLSDIGTYQCKVKKAPGVANK--KFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEP--KEGSLPLQFEWQKLSDSQTM  165 (214)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEE--EEEEEEECCCBSCEEEEESCCBTTCCEEEEEEC--SBCCSSCEEEEEECSTTCCC
T ss_pred             cCChhhCeEEEEEEEeCCCcccc--EEEEEEEcCCCCceeeeecceecCCcEEEEecC--CCCCCCCEEEEEECCCCCcc
Confidence            99999999999999998876655  44555555665443211 113568999999997  35555443444453222211


Q ss_pred             eE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        202 LV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       202 ~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .. .........|.|.+++.+|.|.|  +|.|.|.+|....+..+.+.
T Consensus       166 ~~~~~~~~~~~~L~i~~~~~~d~G~Y--~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          166 PTPWLAEMTSPVISVKNASSEYSGTY--SCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             CGGGGGGTTSSEEEECSCCGGGCEEE--EEEEECSSCEEEEEEEECCB
T ss_pred             CccceeccCCCEEEEecCCHHHCEEE--EEEEEcCCCcEEEEEEEEEe
Confidence            11 11223456899999999999999  99999999988777777665

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.78  E-value=9.6e-18  Score=127.59  Aligned_cols=144  Identities=22%  Similarity=0.319  Sum_probs=103.9

Q ss_pred             CCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE----eeceeecCceeEEEeeCCCcE
Q psy11549          2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK----YAPICKSDRIVIVGASRSESV   77 (261)
Q Consensus         2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~   77 (261)
                      +||.++.. ..+.....+++|.|.+++.+|+|.|+|.+.+......+..+.|.|.    .+|.+...... ..+..|+.+
T Consensus       127 ~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~-~~~~~g~~~  204 (289)
T 3ejj_X          127 EGGRQVLR-KTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSK-LVRIRGEAA  204 (289)
T ss_dssp             GGGEECCT-TCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSS-EECCSSSCE
T ss_pred             cCCeecCC-CccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCc-eEEEeCCcE
Confidence            46666653 3445566678999999999999999999995544444677888888    56666544433 456789999


Q ss_pred             EEEEEEee-CCCCceeEEEEcCCccccccCCce-EE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         78 DIHCAVEA-DPPARSFKWKFNNSGETLDVGSER-FS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        78 ~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~-~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      .|.|.+.+ .|.+ .+.|++++..  +...... +.  .......|.|.++..+|+|.|+|.|.|..|....++.+.
T Consensus       205 ~l~C~~~~~~p~~-~i~W~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~  278 (289)
T 3ejj_X          205 QIVCSATNAEVGF-NVILKRGDTK--LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ  278 (289)
T ss_dssp             EEEEEEEESSSCC-EEEEEETTEE--CCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EEEEEeCCCCCce-EEEEEECCEE--eeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEE
Confidence            99999998 4556 8999998742  2111110 00  011245799999999999999999999999888854443

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.78  E-value=3.1e-19  Score=137.15  Aligned_cols=150  Identities=15%  Similarity=0.162  Sum_probs=105.6

Q ss_pred             CCCCeeccCCC---CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEEeeceeecCceeEEEeeCCCc
Q psy11549          1 MAGGIPLAHNT---SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKYAPICKSDRIVIVGASRSES   76 (261)
Q Consensus         1 ~~ng~~l~~~~---~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~   76 (261)
                      +|||+++....   ........+.|.|.++..+|+|.|+|.|.|..+.. .+..+.|.|..+|.+.........+..|+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~  229 (308)
T 4fom_A          150 EGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKG  229 (308)
T ss_dssp             CCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCS
T ss_pred             EECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeecccc
Confidence            47777774211   00111122479999999999999999999987654 345677788888887644433355678899


Q ss_pred             EEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCC
Q psy11549         77 VDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK  156 (261)
Q Consensus        77 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~  156 (261)
                      +.|.|.+.+.|+|..+.|++++..  +  ....  .......+.|.++..+|+|.|+|.|.|..|....  .+.|.|..+
T Consensus       230 v~l~C~~~g~P~p~~v~W~k~~~~--~--~~~~--~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~--~~~l~V~~~  301 (308)
T 4fom_A          230 VNLKCNADANPPPFKSVWSRLDGQ--W--PDGL--LASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSD--QKVIYISDP  301 (308)
T ss_dssp             CEEECCEEEESCEEEEECCBSSSC--C--CSSC--BCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEE--EEECCEECC
T ss_pred             EEEEEEEecCCCCcEEEEEECCeE--C--CCcE--EEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEE--EEEEEEEcC
Confidence            999999999988767999997742  1  1111  1122335778899999999999999999998776  455556566


Q ss_pred             CC
Q psy11549        157 PQ  158 (261)
Q Consensus       157 p~  158 (261)
                      |.
T Consensus       302 P~  303 (308)
T 4fom_A          302 PH  303 (308)
T ss_dssp             C-
T ss_pred             CC
Confidence            64

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.78  E-value=3.7e-19  Score=128.04  Aligned_cols=135  Identities=15%  Similarity=0.196  Sum_probs=90.6

Q ss_pred             CCCCeeccCCC-CceEEEECCeEEEccCCCCCCEeEEEEEEeCC-Cc-ceeeeEEEEEEe---eceeecCceeEEEeeCC
Q psy11549          1 MAGGIPLAHNT-SARIILSNQSLVLQKVSRQSAGTYKCSAINTK-GE-ATSNQLKLRVKY---APICKSDRIVIVGASRS   74 (261)
Q Consensus         1 ~~ng~~l~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~-~~-~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g   74 (261)
                      +|||.++.... .......+++|.|.+++.+|+|.|+|.+.|.. +. ..+..+.|.|..   +|.+.... . ..+.+|
T Consensus        38 ~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~-~~v~~G  115 (198)
T 1ugn_A           38 YREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQP-S-PVVNSG  115 (198)
T ss_dssp             EESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEES-C-SEEETT
T ss_pred             EECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCC-c-cccCCC
Confidence            46777664211 11122345789999999999999999999987 42 235678888876   34443222 1 357799


Q ss_pred             CcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE--e-CCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         75 ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--S-GSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        75 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +.++|.|.+.+. ++ .+.|++++....  .....+.  . ......|.|.++..+|+|.|+|.|.|..+
T Consensus       116 ~~v~L~C~~~~~-~~-~v~W~k~g~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          116 GNVTLQCDSQVA-FD-GFILCKEGEDEH--PQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             CCEEEEEECSSC-CS-EEEEEEC--------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             CcEEEEEecCCC-Cc-EEEEEECCCccC--CccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            999999999988 45 899999875321  1111111  1 12246899999999999999999999765

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=1.8e-18  Score=134.45  Aligned_cols=148  Identities=23%  Similarity=0.319  Sum_probs=104.3

Q ss_pred             CCCCeeccCCCCc---eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee----ceeecCceeEEEeeC
Q psy11549          1 MAGGIPLAHNTSA---RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA----PICKSDRIVIVGASR   73 (261)
Q Consensus         1 ~~ng~~l~~~~~~---~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~----p~~~~~~~~~~~~~~   73 (261)
                      +|||+++..+...   .....+.+|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|...    |.+.........+..
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~  236 (334)
T 1ry7_B          158 LKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDVLERSPHRPILQAGLPANQTAVL  236 (334)
T ss_dssp             CBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEE-EEEEEEEEECCCCSSCBCCTTCSCCEEEES
T ss_pred             EECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCE-EEEEEEEEecCCCCCCceEecCCCceEEeC
Confidence            5788888643321   112234589999999999999999999998876 66788888753    333322222366889


Q ss_pred             CCcEEEEEEEeeCCCCceeEEEE----cCCccccccCCc-eEEe---------CCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         74 SESVDIHCAVEADPPARSFKWKF----NNSGETLDVGSE-RFSS---------GSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~----~~~~~~~~~~~~-~~~~---------~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      |+.+.|.|.+.+.|.+ .+.|++    ++.  .+..... .+..         ......|.|.++..+|+|.|+|.|.|.
T Consensus       237 G~~v~l~C~~~g~p~p-~v~W~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  313 (334)
T 1ry7_B          237 GSDVEFHCKVYSDAQP-HIQWLKHVEVNGS--KVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNS  313 (334)
T ss_dssp             SCCEEECCCCBCSSCE-EEEEEECCCGGGC--SBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEES
T ss_pred             CCCEEEEEEEecCCCC-eEEEEECCcCCCc--cccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCC
Confidence            9999999999998887 899998    432  2211111 1111         112237999999999999999999999


Q ss_pred             CceEEeeEEEEEE
Q psy11549        140 IGTQVTPCLYQVV  152 (261)
Q Consensus       140 ~~~~~~~~~~~v~  152 (261)
                      .|.......+.|.
T Consensus       314 ~G~~~~~~~l~V~  326 (334)
T 1ry7_B          314 IGFSHHSAWLVVL  326 (334)
T ss_dssp             SCCEEEEEEEEEE
T ss_pred             CCeEEEEEEEEEE
Confidence            9988775555444

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.78  E-value=2.4e-19  Score=128.83  Aligned_cols=137  Identities=17%  Similarity=0.202  Sum_probs=85.0

Q ss_pred             CCCCeeccCCCC-ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEEe---eceeecCceeEEEeeCCC
Q psy11549          1 MAGGIPLAHNTS-ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKY---APICKSDRIVIVGASRSE   75 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~   75 (261)
                      ||||.++..... ......+++|.|.+++.+|+|.|+|.+.|..+.. .+..+.|.|..   +|.+...+ . ..+.+|+
T Consensus        38 ~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~-~~v~~G~  115 (196)
T 2d3v_A           38 VKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALP-S-PVVTSGE  115 (196)
T ss_dssp             EETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC------------
T ss_pred             EECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccC-C-ccccCCC
Confidence            477777743211 0111234589999999999999999999887642 25567888876   45544332 2 4577999


Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe-CCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS-GSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .++|.|.+.+.| + .+.|++++.............. ......|.|.++..+|+|.|+|.|.|..+
T Consensus       116 ~v~L~C~~~~~p-~-~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          116 NVTLQCGSRLRF-D-RFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             -CEEEEEESSCC-S-EEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cEEEEEEcCCCC-C-EEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            999999999887 5 8999998753211000000111 12345899999999999999999998754

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.78  E-value=2.2e-18  Score=131.32  Aligned_cols=149  Identities=18%  Similarity=0.240  Sum_probs=103.4

Q ss_pred             CeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEE
Q psy11549          4 GIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY----APICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         4 g~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      |.++. ...+.....+++|.|.+++.+|+|.|+|.+.|..+...+..+.|.|..    +|.+...+.. ..+..|+.+.|
T Consensus       129 ~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~-~~~~~g~~v~l  206 (292)
T 4dkd_C          129 GRPLM-RHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAE-LVRIRGEAAQI  206 (292)
T ss_dssp             GCCCC-SSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSC-BCCCSSSCEEE
T ss_pred             CCccc-cCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCc-eeEecCCCEEE
Confidence            55553 233344555667999999999999999999988776656688999986    6766544433 44569999999


Q ss_pred             EEEEeeCCCCceeEEEEcCCccccccCCc-eEEeC--CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCC
Q psy11549         80 HCAVEADPPARSFKWKFNNSGETLDVGSE-RFSSG--SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK  156 (261)
Q Consensus        80 ~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~  156 (261)
                      .|.+.+.+++..+.|++++....  .... .+...  .....|.|.++..+|+|.|+|.|.|..|.....  +.+.|...
T Consensus       207 ~C~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~--~~l~V~~~  282 (292)
T 4dkd_C          207 VCSASSVDVNFDVFLQHNNTKLA--IPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTS--MFFRVVES  282 (292)
T ss_dssp             EEEEEESSSCCEEECCBSSCCCC--CCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEE--EEECC---
T ss_pred             EEEecCCCCceEEEEeCCCcccc--cCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeE--EEEEEeeC
Confidence            99999888765788887764221  1111 11111  123479999999999999999999999987764  44555444


Q ss_pred             CC
Q psy11549        157 PQ  158 (261)
Q Consensus       157 p~  158 (261)
                      ..
T Consensus       283 ~~  284 (292)
T 4dkd_C          283 AG  284 (292)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=7.9e-18  Score=120.04  Aligned_cols=169  Identities=13%  Similarity=0.073  Sum_probs=106.4

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+..|++++|.|.+.+. ++ .+.|++++........  ..........|.|.++..+|+|.|+|.+.+..+....+..+
T Consensus        14 ~v~~G~~v~L~C~~~~~-~~-~~~w~k~g~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~   89 (188)
T 1oll_A           14 MVPKEKQVTICCQGNYG-AV-EYQLHFEGSLFAVDRP--KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL   89 (188)
T ss_dssp             EEETTCCEEEEEECCTT-CC-EEEEEETTEEEEEECC--SSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCE
T ss_pred             cCCCCCCEEEEEecCCC-CC-EEEEEECCCccccccc--ccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCce
Confidence            46799999999998753 33 7999998743221101  11122345579999999999999999998865533222234


Q ss_pred             EEEeCCCCCCCCcc---eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        150 QVVLAGKPQPPQNC---SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       150 ~v~~~~~p~~p~~~---~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      .+.+...+.+|...   ......|+.++|.|.+  .+ .+..|. |+++....... .........|.|.+++.+|.|.|
T Consensus        90 ~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~--~~-~~~~~~-w~k~g~~~~~~-~~~~~~~~~L~I~~v~~~d~G~Y  164 (188)
T 1oll_A           90 DLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL--DT-ATSMFL-LLKEGRSSHVQ-RGYGKVQAEFPLGPVTTAHRGTY  164 (188)
T ss_dssp             EEEEESCSCCCEEEEESCSEEETTCEEEEEEEC--SS-SCSEEE-EEEESSSCEEE-EEECSSEEEEEEEECCGGGCEEE
T ss_pred             EEEecccCCCCeEEECCCCccccCCEEEEEEEc--CC-CCCEEE-EEECCcccccc-ccCCCceeEEEECCCCcCCCcEE
Confidence            44444332222111   0112469999999997  22 344444 44554433221 11223457899999999999999


Q ss_pred             EEEEEEEcCC-CcCCceeeeeeee
Q psy11549        227 RVVISGVNAK-GRSLPVIWDDFSM  249 (261)
Q Consensus       227 ~~~~~a~N~~-G~~~~s~~~~~~~  249 (261)
                        +|.|.|.. +.+..|..+.+..
T Consensus       165 --~C~a~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          165 --RCFGSYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             --EEECEEETTEECCCCCCEEEEE
T ss_pred             --EEEEEcCCCcCCCCCCcEEEEe
Confidence              88888874 4567777777654

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.77  E-value=8.8e-19  Score=141.92  Aligned_cols=210  Identities=8%  Similarity=0.033  Sum_probs=120.5

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC---------c--ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEee
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG---------E--ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEA   85 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~---------~--~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~   85 (261)
                      +|.|.+++.+|+|.|+|.+.|..+         .  .....+.|.|..    +|.+...... ..+..|+.+.|.|.+.+
T Consensus        80 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g  158 (457)
T 1hzh_H           80 YMELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKD  158 (457)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCC-SCCCTTCCEEEEEEEES
T ss_pred             EEEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCcc-ccccCCCcEEEEEEEeE
Confidence            899999999999999999998765         1  123456777764    3443321111 22568999999999998


Q ss_pred             C-CCCceeEEEEcCCccccccCCceEEeCCc----eeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCC----
Q psy11549         86 D-PPARSFKWKFNNSGETLDVGSERFSSGSR----GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK----  156 (261)
Q Consensus        86 ~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~----  156 (261)
                      . |.+..+.|++++...... ........+.    .+.|.|.++..+| |.|+|.|.|..+.....  ..+.+...    
T Consensus       159 ~~P~~~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~--~~v~~~~~~~~~  234 (457)
T 1hzh_H          159 YFPEPVTVSWNSGALTSGVH-TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD--KKAEPKSCDKTH  234 (457)
T ss_dssp             BBSCCCEEEETTTTBCTTEE-EEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEE--EECCCCCSCSSC
T ss_pred             EeCCCeEEEEEeCCEeccce-EcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCccee--EEecccCCCccc
Confidence            7 433489999876421110 0011111111    2368999999989 99999999976654432  22222110    


Q ss_pred             -----C-----CCCCcceEE-------eecCCeEEEEeecCCCCCCCe---EEEEEEEeCCccce--eEEEecCCCCcEE
Q psy11549        157 -----P-----QPPQNCSVR-------NETTSSVHISCTPGYDGGLPQ---TFTLELYSASDLNL--LVNLTNLDTPAFT  214 (261)
Q Consensus       157 -----p-----~~p~~~~v~-------~~~~~~~~l~c~~~~~~~~p~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~  214 (261)
                           |     .+|. +.+.       ...|+.+.|.|.+  .+..|.   ..+.|+++......  ...........+.
T Consensus       235 ~~~~~~~~~~~~~p~-v~~~~p~~~~~~~~G~~v~L~C~~--~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~  311 (457)
T 1hzh_H          235 TCPPCPAPELLGGPS-VFLFPPKPKDTLMISRTPEVTCVV--VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR  311 (457)
T ss_dssp             SCCSCCCCCCSSSCE-EEEECCCHHHHHCTTSCCCEEEEE--ECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEE
T ss_pred             ccCCCCCccccCCce-EEeECcCchhhcccCCceEEEEEE--EcccCCCCceEEEEEeCCccccccccccceecCCCcEE
Confidence                 0     0121 1111       1348999999997  343332   13444454322211  1111112223444


Q ss_pred             EcC---CCCCC---ccEEEEEEEEEcCCCcCC
Q psy11549        215 LED---LGLDG---TVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       215 i~~---~~l~~---~~~Y~~~~~a~N~~G~~~  240 (261)
                      +..   +...+   +|.|  +|.|.|..+...
T Consensus       312 ~~~~l~i~~~d~~d~G~Y--~C~a~n~~~~~~  341 (457)
T 1hzh_H          312 VVSVLTVLHQDWLNGKEY--KCKVSNKALPAP  341 (457)
T ss_dssp             EEEEECCCHHHHHHTCCE--EEEEECTTSSSC
T ss_pred             EEEEEEECHHHccCCCcE--EEEEeCCCCCCc
Confidence            432   22344   8999  999998866543

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.77  E-value=7.7e-17  Score=137.75  Aligned_cols=237  Identities=13%  Similarity=0.033  Sum_probs=158.9

Q ss_pred             CCCeeccCCCCceEEE----ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcE
Q psy11549          2 AGGIPLAHNTSARIIL----SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESV   77 (261)
Q Consensus         2 ~ng~~l~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~   77 (261)
                      |||++|..+.  ....    ..++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|..+|.....+..  .......+
T Consensus       203 ~~g~~l~~~~--~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~--~~~~~~~v  278 (731)
T 2v5y_A          203 IDVRDAPLKE--IKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQL--ASVGATYL  278 (731)
T ss_dssp             SSSCCEEEEE--EEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEE--EEECSSCE
T ss_pred             CCCccccccc--eEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcce--eccCCceE
Confidence            6787775321  1111    12589999999999999999999999984466788999988876544432  23356788


Q ss_pred             EEEEEEeeCC--CCc---eeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE--cCCceEEeeEEEE
Q psy11549         78 DIHCAVEADP--PAR---SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ--NAIGTQVTPCLYQ  150 (261)
Q Consensus        78 ~l~C~~~~~~--~~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~--~~~~~~~~~~~~~  150 (261)
                      .|.|......  .+.   .+.|...+.  .     ...........+.|.++...+.+.|+|.|.  |..|....+..+.
T Consensus       279 ~l~w~~~~~~g~~~i~~Y~v~~~~~~~--~-----~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~  351 (731)
T 2v5y_A          279 WIQLNANSINGDGPIVAREVEYCTASG--S-----WNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALR  351 (731)
T ss_dssp             EEECCCSSBSSCSCCCEEEEEEEESSS--S-----CEEEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEE
T ss_pred             EEEeCCcccCCCCccEEEEEEEEECCC--C-----ceEEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEE
Confidence            8888764321  111   355544321  1     111111223478999999999999999999  8887654322232


Q ss_pred             E--EeCCCCCCCCcceEEeecCCeEEEEeecCCC---CCCCeEEEEEEEeCCccce-eE-E---EecCCCCcEEEcCCCC
Q psy11549        151 V--VLAGKPQPPQNCSVRNETTSSVHISCTPGYD---GGLPQTFTLELYSASDLNL-LV-N---LTNLDTPAFTLEDLGL  220 (261)
Q Consensus       151 v--~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~---~~~p~~~~~~~~~~~~~~~-~~-~---~~~~~~~~~~i~~~~l  220 (261)
                      +  ....+|.+|.++.+.......+.|+|.++..   .+....|.+.|+....... .+ .   ........++|.+  |
T Consensus       352 ~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L  429 (731)
T 2v5y_A          352 TRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITN--L  429 (731)
T ss_dssp             EECCCCCCSCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECS--C
T ss_pred             eeecCCCCCCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECC--C
Confidence            3  3345667898888888889999999997432   1223468888776543221 11 1   2224457899999  9


Q ss_pred             CCccEEEEEEEEEcCCCcCCceeeeeeeeccc
Q psy11549        221 DGTVLMRVVISGVNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       221 ~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~  252 (261)
                      .+++.|.|+|.|.|..|.+. |..+.+++...
T Consensus       430 ~p~t~Y~~~V~A~n~~G~s~-S~~~~~~T~~~  460 (731)
T 2v5y_A          430 SPYTNVSVKLILMNPEGRKE-SQELIVQTDED  460 (731)
T ss_dssp             CSSCEEEEEEEEECSSCEEE-CCCEEEECCCC
T ss_pred             CCCCEEEEEEEEEcCCCCCC-CceEEEEccCC
Confidence            99999999999999999985 66666665443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.77  E-value=4.1e-18  Score=121.11  Aligned_cols=159  Identities=12%  Similarity=0.069  Sum_probs=102.3

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+.+|++++|.|.+.+ +.+ .+.|++++..        . .  .....|.|.++..+|+|.|+|.+.|..+....+..+
T Consensus        18 ~v~~G~~v~L~C~~~~-~~~-~~~W~k~g~~--------~-~--~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~   84 (184)
T 2gi7_A           18 LVPLEKPVTLRCQGPP-GVD-LYRLEKLSSS--------R-Y--QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQL   84 (184)
T ss_dssp             EEETTCCEEEEEECST-TCS-EEEEEETTTC--------C-E--ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCE
T ss_pred             cccCCCcEEEEEeCCC-CCC-EEEEEECCcc--------c-c--CcccEEEECcCChhhCceEEEEEEcCCCccCCCCCE
Confidence            4779999999999887 555 8999998743        0 1  123379999999999999999999977643322234


Q ss_pred             EEEeCCCCCCCCcce---EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        150 QVVLAGKPQPPQNCS---VRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       150 ~v~~~~~p~~p~~~~---v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      .+.+...+.+|....   .....|+.++|.|.+   .+.|..+.|+ ++......... .......|.|.+++.+|.|.|
T Consensus        85 ~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~---~~~~~~~~w~-k~g~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y  159 (184)
T 2gi7_A           85 ELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQT---RYGFDQFALY-KEGDPAPYKNP-ERWYRASFPIITVTAAHSGTY  159 (184)
T ss_dssp             EEEEESSSCCCEEEEECCCSSCCTTCEEEEEEC---SSCCCEEEEE-ECCCCTTSCCC-CEEEEESSSEEEETTCCSEEE
T ss_pred             EEEecCcCCCCEEEeCCCceecCCCcEEEEEEc---CCCCcEEEEE-ECCCcCcceec-CCCceEEEEEccCCccCCeEE
Confidence            444433332222110   112359999999996   2344555544 44332211110 011235678888889999999


Q ss_pred             EEEEEEEcCCC---cCCceeeeeee
Q psy11549        227 RVVISGVNAKG---RSLPVIWDDFS  248 (261)
Q Consensus       227 ~~~~~a~N~~G---~~~~s~~~~~~  248 (261)
                        +|.|.|..+   .++.|..+.+.
T Consensus       160 --~C~a~n~~~~~~~s~~S~~~~l~  182 (184)
T 2gi7_A          160 --RCYSFSSRDPYLWSAPSDPLELV  182 (184)
T ss_dssp             --EEEEECTTSTTBCCCCCCCEEEE
T ss_pred             --EEEEEeCCCCcccCCCCCcEEEE
Confidence              999999875   45566666553

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.77  E-value=4.7e-18  Score=123.04  Aligned_cols=172  Identities=16%  Similarity=0.211  Sum_probs=112.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc---------ccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL---------DVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~---------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      +.+.+|+.+.|.|.+.+.|.+ .+.|++++.....         .....++....  ..|.|.++..+|+|.|+|.+.+.
T Consensus        14 ~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~L~i~~~~~~d~G~Y~C~~~~~   90 (209)
T 1nbq_A           14 VRIPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP--TGITFKSVTREDTGTYTCMVSEE   90 (209)
T ss_dssp             CCEETTCCCEEECEEESCSSE-EEEEEEEETTEEEESEETTEECTTTTTTCEEET--TEEECSCCCTTSCSEEEEEEEET
T ss_pred             eEEEcCCCEEEEEEEeCCCCc-EEEEEEcCCceeEEEEecCccCccccCceEeec--cEEEEeeCCHHHCcEEEEEEecC
Confidence            567899999999999988766 8999997643100         01112222222  47999999999999999999998


Q ss_pred             CceEEeeEEEEEEeCCCCCCCCcc-eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE----------EEecC
Q psy11549        140 IGTQVTPCLYQVVLAGKPQPPQNC-SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV----------NLTNL  208 (261)
Q Consensus       140 ~~~~~~~~~~~v~~~~~p~~p~~~-~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~----------~~~~~  208 (261)
                      .+.......+.+.+..+|..+... ......|+.+.|.|.+  ..+.|.....|++.........          .....
T Consensus        91 ~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~--~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (209)
T 1nbq_A           91 GGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSE--QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP  168 (209)
T ss_dssp             TSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCC--CSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCT
T ss_pred             CCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeC--CCCCCCceeEEEECCeeCCCccccceeeeccceEEcC
Confidence            653333335555565666543221 1223569999999995  3445544344445433221100          00112


Q ss_pred             CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        209 DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       209 ~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      ....|.|.++..+|.|.|  +|.|.|..|....+..+.+
T Consensus       169 ~~~~L~i~~~~~~d~G~Y--~C~a~n~~g~~~~s~~v~l  205 (209)
T 1nbq_A          169 TTGELVFDPLSASDTGEY--SCEARNGYGTPMTSNAVRM  205 (209)
T ss_dssp             TTCCEEESSCCGGGCCCE--EEEEECSSSCCEECCCBCC
T ss_pred             CcceEEEEeccccCCeEE--EEEEeCCcCcccccccEEE
Confidence            457899999999999999  9999999998855554444

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.77  E-value=8.1e-19  Score=137.19  Aligned_cols=146  Identities=18%  Similarity=0.253  Sum_probs=79.3

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCC-Ccc--eeeeEEEEEEe------eceeecCceeE-EE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTK-GEA--TSNQLKLRVKY------APICKSDRIVI-VG   70 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~-~~~--~s~~~~l~V~~------~p~~~~~~~~~-~~   70 (261)
                      ||||++|...  ......+..|.|.+++.+|+|.|+|.|.|.. |..  .+..+.|.|..      +|.+..+.... ..
T Consensus       160 ~k~~~~l~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~  237 (349)
T 4dep_C          160 YMGCYKIQNF--NNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYE  237 (349)
T ss_dssp             EETTEECCSC--SSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC---------
T ss_pred             eeCCEECCCc--cceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEE
Confidence            5788888532  3455566789999999999999999999986 443  35667777765      45555444321 26


Q ss_pred             eeCCCcEEEEEEEee----CCCCceeEEEEcCCccccccCCceEEe---------CC--ceeEEEEecCCCCcC-eEEEE
Q psy11549         71 ASRSESVDIHCAVEA----DPPARSFKWKFNNSGETLDVGSERFSS---------GS--RGSMLRYTPVTELDY-GTLSC  134 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~----~~~~~~~~W~~~~~~~~~~~~~~~~~~---------~~--~~~~l~i~~~~~~d~-g~y~C  134 (261)
                      +..|+.+.|.|.+.+    .|.+ .+.|++++....  ....++..         ..  ..+.|.|.++..+|. |.|+|
T Consensus       238 v~~G~~v~l~C~~~~~~~g~p~p-~v~W~~~g~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C  314 (349)
T 4dep_C          238 KEPGEELLIPCTVYFSFLMDSRN-EVWWTIDGKKPD--DITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVC  314 (349)
T ss_dssp             -------CCCEEEEECCCTTCCC-EEEEESSCC----------CCCCEEEECCTTCCEEEEECC-------------CEE
T ss_pred             EecCCcEEEEEEEEEccCCCCCC-EEEEEECCEEcc--ccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEE
Confidence            789999999999995    4556 899999874321  10111111         11  133599999999999 99999


Q ss_pred             EEEcCCceEEeeEEEEE
Q psy11549        135 AAQNAIGTQVTPCLYQV  151 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~v  151 (261)
                      .|.|..|.......+.+
T Consensus       315 ~a~N~~G~~~~~~~l~v  331 (349)
T 4dep_C          315 HARSAKGEVAKAAKVKQ  331 (349)
T ss_dssp             EEECSSCEEEEECC---
T ss_pred             EEEcCCCcEEEEEEEee
Confidence            99999998877544444

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.77  E-value=1.6e-18  Score=123.69  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=90.0

Q ss_pred             CCCCeeccCCCC-ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCc-ceeeeEEEEEEe---eceeecCceeEEEeeCCC
Q psy11549          1 MAGGIPLAHNTS-ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKY---APICKSDRIVIVGASRSE   75 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~-~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~   75 (261)
                      ||||.++..... ......+++|.|.+++.+|+|.|+|.+.|..+. ..+..+.|.|..   +|.+...+.  ..+.+|+
T Consensus        37 ~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~--~~v~~G~  114 (188)
T 1oll_A           37 HFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG--PEVISGE  114 (188)
T ss_dssp             EETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEESC--SEEETTC
T ss_pred             EECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECCC--CccccCC
Confidence            467776642111 111223468999999999999999999886543 235567888864   454443221  3467999


Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .++|.|.+.+. ++ .+.|++++.....     ..........|.|.++..+|+|.|+|.|.|..
T Consensus       115 ~v~L~C~~~~~-~~-~~~w~k~g~~~~~-----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          115 KVTFYCRLDTA-TS-MFLLLKEGRSSHV-----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EEEEEEECSSS-CS-EEEEEEESSSCEE-----EEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             EEEEEEEcCCC-CC-EEEEEECCccccc-----cccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            99999998764 34 8999998743221     11233445689999999999999999998753

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.76  E-value=8.5e-18  Score=121.59  Aligned_cols=170  Identities=10%  Similarity=0.043  Sum_probs=105.5

Q ss_pred             EEeeCCCcEEEEEEEee-CCCCceeEEEEcCCccccccCCceEEeCC--ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEA-DPPARSFKWKFNNSGETLDVGSERFSSGS--RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+.+|+.+.|.|.+.. .|.| .+.|++++.. .......++....  ....|.|.++..+|+|.|+|.|.|.  ....
T Consensus        12 ~~v~eg~~v~l~c~~~~~~P~p-~i~W~kng~~-l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng--~a~~   87 (207)
T 3rbs_A           12 VEILEKGQVRFWMQAEKLSGNA-KVNYIFNEKE-IFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDG--KATN   87 (207)
T ss_dssp             EEECGGGCEEEEEECSCCCSCC-EEEEEETTEE-ECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEET--TEEE
T ss_pred             eEEEeCCeEEEEEEEecCCCCC-EEEEEECCEE-CccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECC--CeEE
Confidence            67889999999999975 4556 8999998842 2122223333333  4557999999999999999999993  3333


Q ss_pred             eEEEEEEe-------------------CCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEE-
Q psy11549        146 PCLYQVVL-------------------AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNL-  205 (261)
Q Consensus       146 ~~~~~v~~-------------------~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~-  205 (261)
                      ...+.+..                   ..+|.-...+......|..+.|.|.+  .+..|..-+.|+++.......... 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v--~g~~P~p~i~W~k~g~~l~~~~~~~  165 (207)
T 3rbs_A           88 HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDEKHD  165 (207)
T ss_dssp             EEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEE--ESCCTTCEEEEEETTEEECCCCCCC
T ss_pred             EEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEE--eCCCCCCEEEEEECCEECCCCCceE
Confidence            21221110                   01221111112344569999999997  444243333444543222111001 


Q ss_pred             ecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeee
Q psy11549        206 TNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       206 ~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~  246 (261)
                      .......|.|.+++.+|.|.|  +|.|.|.+|....+..+.
T Consensus       166 ~~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~~~~~~L~  204 (207)
T 3rbs_A          166 FKDGICTLLITEFSKKDAGIY--EVILKDDRGKDKSRLKLV  204 (207)
T ss_dssp             CSSEEEEEEETTCCGGGCEEE--EEEEEETTEEEEEEEEEC
T ss_pred             cCCCEEEEEECCCCcccCEEE--EEEEEcCCCEEEEEEEEe
Confidence            111223599999999999999  999999999877665543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.76  E-value=1.7e-18  Score=124.92  Aligned_cols=135  Identities=15%  Similarity=0.169  Sum_probs=93.0

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCC--ceeEEEEc
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPA--RSFKWKFN   97 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~   97 (261)
                      ++|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|..+|........ ..+..|+.++|.|.+.+.+++  .++.|+++
T Consensus        54 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~  131 (202)
T 1vca_A           54 STLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKG  131 (202)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEET
T ss_pred             cEEEECcCCHHHCEEEEEEEEECCceE-eeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeC
Confidence            479999999999999999999998765 67889999877653322222 447799999999999986542  37999998


Q ss_pred             CCccccccCCceEE-----eCCceeEEEEecCCCCcCeEEEEEEEcCCceE-----EeeEEEEEEeCCCCC
Q psy11549         98 NSGETLDVGSERFS-----SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ-----VTPCLYQVVLAGKPQ  158 (261)
Q Consensus        98 ~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-----~~~~~~~v~~~~~p~  158 (261)
                      +..  +........     .......|.|.....+|.|.|+|.|.|..+..     .....+.+.|..+|.
T Consensus       132 ~~~--l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          132 DHL--MKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             TEE--EEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred             CeE--CcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence            742  211110000     01123356788888889999999999987652     123355566666654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.76  E-value=9.4e-18  Score=121.78  Aligned_cols=184  Identities=16%  Similarity=0.177  Sum_probs=111.5

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC---CceEEeCCce---eEEEEecCCCCcCe
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG---SERFSSGSRG---SMLRYTPVTELDYG  130 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~---~~l~i~~~~~~d~g  130 (261)
                      .+|.+...+.. +.+.+|+.+.|.|.+.+.|.+ .+.|++++........   ..+.......   ..+.|.++..+|+|
T Consensus         8 ~pp~i~~~p~~-~~v~~G~~v~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   85 (212)
T 2v9r_A            8 FPPRIVEHPSD-LIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (212)
T ss_dssp             EEEEEEECCCC-EEECTTCCEEECCEEEEESCC-EEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred             CCcceecCCCc-eEEeCCCcEEEEEEcCCCCCC-EEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence            45555554444 678899999999999988887 8999998743221111   1122222221   12344567899999


Q ss_pred             EEEEEEEcCCceEE-eeEEEEEEeCCCCC--CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEec
Q psy11549        131 TLSCAAQNAIGTQV-TPCLYQVVLAGKPQ--PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTN  207 (261)
Q Consensus       131 ~y~C~~~~~~~~~~-~~~~~~v~~~~~p~--~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~  207 (261)
                      .|+|.+.+..+... ....+.+....++.  .|...  ....|+.+.|.|.+  ..+.|.....|+++............
T Consensus        86 ~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~--~~~~g~~~~l~C~~--~~~~p~~~v~W~~~~~~l~~~~~~~~  161 (212)
T 2v9r_A           86 VYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV--MVAVGEPAVMECQP--PRGHPEPTISWKKDGSPLDDKDERIT  161 (212)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCE--EEETTSCEEEECBC--CCEESCCEEEEEETTEEECTTSTTEE
T ss_pred             EEEEEEECCCCceeecceEEEEEeccccceeCCCce--EecCCCcEEEEEec--CCCCCCCEEEEEECCccCCCCcceEE
Confidence            99999999877653 33344444322221  23333  33569999999996  34444333344444322110000000


Q ss_pred             CCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce-eeeeee
Q psy11549        208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV-IWDDFS  248 (261)
Q Consensus       208 ~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s-~~~~~~  248 (261)
                      .....|.|.+++..|.|.|  +|.|.|..|..... ..+.+.
T Consensus       162 ~~~~~L~i~~~~~~d~G~Y--~C~a~N~~g~~~s~~~~l~V~  201 (212)
T 2v9r_A          162 IRGGKLMITYTRKSDAGKY--VCVGTNMVGERESEVAELTVL  201 (212)
T ss_dssp             EETTEEEESSCCGGGCEEE--EEEEEETTEEEECCCEEEEEE
T ss_pred             ccCCeEEEeeCCHhhCeeE--EEEEecccCceecceEEEEEE
Confidence            1236899999999999999  99999999975443 445554

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.76  E-value=3.3e-17  Score=120.27  Aligned_cols=129  Identities=12%  Similarity=0.196  Sum_probs=84.2

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeEEEEcC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFKWKFNN   98 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~   98 (261)
                      .+|.|.+++.+|+|.|+|.|.|..+.. .  ..+.+...+........ ..+..|+.+.|.|.+.+. |.| .+.|++++
T Consensus        83 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~-~--~~v~~~~~~~~~~~~~~-~~~~~g~~v~l~c~~~g~~P~p-~i~W~k~~  157 (226)
T 4f80_A           83 AALRIHNVTASDSGKYLCYFQDGDFYE-K--ALVELKVAALGSDLHVD-VKGYKDGGIHLECRSTGWYPQP-QIQWSNNK  157 (226)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEE-E--EEEEEEEEBCCCCCEEE-EEEEETTEEEEEEEEEEEBSCC-EEEEECTT
T ss_pred             EEEEEeeCchHHCeeEEEEEECCCcEE-E--EEEEEeeccceecccce-eeeccCCceeeEEEeccCCCCC-EEEEEECC
Confidence            379999999999999999999987654 3  34555444443333333 667889999999999985 666 89999865


Q ss_pred             CccccccCCceEEeCC--ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCC
Q psy11549         99 SGETLDVGSERFSSGS--RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGK  156 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~  156 (261)
                      . ..+...........  ....+.+..+..+|.|.|+|.|.|..|.....  ..|.+.+|
T Consensus       158 ~-~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~--~~v~v~ep  214 (226)
T 4f80_A          158 G-ENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKT--ASISIADP  214 (226)
T ss_dssp             S-CBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEE--EEECCCTT
T ss_pred             c-eEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEE--EEEEECCC
Confidence            3 22222222222222  22234455677899999999999999887774  44555443

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.76  E-value=1.3e-17  Score=121.94  Aligned_cols=131  Identities=17%  Similarity=0.249  Sum_probs=85.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      .+|.|.+++.+|+|.|+|.+.+ .+.. ...+.|.|..++........ ..+..|+.+.|.|.+.+.|.| .+.|++++.
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~-~~~~-~~~~~l~V~~~~~~~~~~~~-~~~~~g~~v~L~C~~~g~P~p-~i~W~~~~g  155 (222)
T 3sbw_C           80 AALQITDVKLQDAGVYRCMISY-GGAD-YKRITVKVNAPYNKINQRIL-VVDPVTSEHELTCQAEGYPKA-EVIWTSSDH  155 (222)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES-SSEE-EEEEEEEEEBCCCCCEEEEE-EEETTTTEEEEEEEEEEBSCC-EEEEEETTC
T ss_pred             EEEEEcCcccccCeEEEEEEEe-CCCc-eeEEEEEEECCCCCCCceee-eeecCCCcEEEEEEecCCCCC-eEEEEECCC
Confidence            3899999999999999999998 4443 56788888765543211111 256789999999999998877 899999742


Q ss_pred             ccccccCCce-EEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCC
Q psy11549        100 GETLDVGSER-FSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP  157 (261)
Q Consensus       100 ~~~~~~~~~~-~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p  157 (261)
                       ..+...... ...  .+......+..+..+|.|.|+|.|.|..|.......  +.+..+|
T Consensus       156 -~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~--l~v~~~p  213 (222)
T 3sbw_C          156 -QVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAE--LVIPELP  213 (222)
T ss_dssp             -CEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEE--EECCCC-
T ss_pred             -ceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEE--EEecCCc
Confidence             222111111 111  111111222244568999999999999998777444  4444444

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.76  E-value=5.5e-18  Score=123.32  Aligned_cols=131  Identities=18%  Similarity=0.302  Sum_probs=93.4

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+........+.+..++...........+..|..+.+.|.+.+.|+| .+.|++++.
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p-~i~W~~~~~  157 (218)
T 4frw_A           79 GSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAP-SVTWDTEVK  157 (218)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCC-EEEEEESSC
T ss_pred             EEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCc-eEEEEECCc
Confidence            5799999999999999999988776654444555554443322222222556789999999999999988 899999875


Q ss_pred             ccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeC
Q psy11549        100 GETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA  154 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~  154 (261)
                      ....   ...+....   ..+.|.|.++..+|.|.|+|.|.|..|.......+.|.|.
T Consensus       158 ~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~V~  212 (218)
T 4frw_A          158 GTTS---SRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILHVS  212 (218)
T ss_dssp             CEEE---EEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCEE
T ss_pred             cccc---CceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEEEC
Confidence            3221   11111111   2347999999999999999999999887766556665553

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.76  E-value=1.4e-18  Score=123.71  Aligned_cols=123  Identities=19%  Similarity=0.265  Sum_probs=85.9

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEcc-CCCCCCEeEEEEEEeCCCcceeeeEEEEEEe--eceee---------------
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQK-VSRQSAGTYKCSAINTKGEATSNQLKLRVKY--APICK---------------   62 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~-~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~--~p~~~---------------   62 (261)
                      +|||++|..+       .+++|.|.+ ++.+|+|.|+|.|.|..|.. +..+.+.|..  ++...               
T Consensus        32 ~k~g~~l~~~-------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  103 (186)
T 1jbj_A           32 EKNGQELPQK-------HDKHLVLQDFSEVEDSGYYVCYTPASNKNT-YLYLKARVGSADDAKKDAAKKDDAKKDDAKKD  103 (186)
T ss_dssp             EETTEEECSC-------CCSEEEEESCCTTTSCEEEEEECSSCCCCC-CEEECCCCCSCCCCCCCCCCCCCCSCCSSSTT
T ss_pred             EECCEECCCC-------CCCEEEECCCCccccCEEEEEEEEeCCCcE-EEEEEEEEecccccccccccccccccCCcccc
Confidence            5788888643       345899999 99999999999999998874 4444444432  22100               


Q ss_pred             ----cC---ceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         63 ----SD---RIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        63 ----~~---~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                          ..   ......+..|+.+.|.|.+   |.| .+.|++++..  +....      .....|.|.++..+|+|.|+|.
T Consensus       104 ~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p-~i~W~k~g~~--i~~~~------~~~~~L~i~~v~~~D~G~Y~C~  171 (186)
T 1jbj_A          104 GSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDK-TIKWLKDGSI--ISPLN------ATKNTWNLGNNAKDPRGTYQCQ  171 (186)
T ss_dssp             CCSCCCCSSCCEECCCSSSCEEEEECSS---SCS-CEEEEETTEE--CCCSS------CCSSCCEEEETTSCCEEEEEEE
T ss_pred             ccccccccccccceecCCCCeEEEEeeC---CCC-eEEEEECCEE--CcccC------CCcceEEECCCCcCcCEEEEEE
Confidence                00   0001234489999999998   555 8999998743  21111      1234699999999999999999


Q ss_pred             EEcCCceE
Q psy11549        136 AQNAIGTQ  143 (261)
Q Consensus       136 ~~~~~~~~  143 (261)
                      |.|..|..
T Consensus       172 a~N~~g~~  179 (186)
T 1jbj_A          172 GAKETSNP  179 (186)
T ss_dssp             ESSCEEEE
T ss_pred             EEcCcCCc
Confidence            99987765

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.76  E-value=2.7e-17  Score=118.75  Aligned_cols=155  Identities=14%  Similarity=0.137  Sum_probs=101.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+.+|+.+.|.|.+.+.+.+..+.|++++.  .+...         ...|.|.++..+|+|.|+|.+.|...  ...  
T Consensus        17 ~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~--~l~~~---------~~~L~i~~v~~~D~G~Y~C~a~n~~~--s~~--   81 (204)
T 3sgj_C           17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNES--LISSQ---------ASSYFIDAATVDDSGEYRCQTQLSTL--SDP--   81 (204)
T ss_dssp             SEEETTCCEEEEEECCSSSSCCCEEEEETTE--EESCC---------SSEEEESSCCGGGCEEEEEEETTSBC--CCC--
T ss_pred             eEEECCCCEEEEEcCCCCCCCcEEEEEECCE--EcccC---------ccEEEEecccccCCEEEEEEeCCCcc--ccc--
Confidence            4577999999999999988775699999874  22111         14799999999999999999987432  232  


Q ss_pred             EEEEeCCCCC--CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        149 YQVVLAGKPQ--PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       149 ~~v~~~~~p~--~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      +.+.+..+|.  .+....+  ..|+.++|.|.+  .++.|..-..|+++....  ..   ......|.|.+++.+|.|.|
T Consensus        82 ~~l~V~~~p~~~~~~~~~v--~~G~~v~L~C~~--~~~~p~~~v~W~k~g~~~--~~---~~~~~~L~i~~v~~~D~G~Y  152 (204)
T 3sgj_C           82 VQLEVHIGWLLLQAPRWVF--KEEDPIHLRCHS--WKNTALHKVTYLQNGKGR--KY---FHHNSDFYIPKATLKDSGSY  152 (204)
T ss_dssp             EEEEEECSSEEEECSCSEE--ETTCCEEEEEEE--GGGCCCEEEEEEETTEEE--EE---EEECCCEEESSCCGGGCEEE
T ss_pred             EEEEEecCceEecCCceeE--eCCCcEEEEEEe--cCCCCCceEEEEECCcEe--ec---ccCCceEEECcCCcccCEEE
Confidence            3333333332  1112333  459999999997  455554433444443322  11   11247899999999999999


Q ss_pred             EEEEEEEcCCCcCCceeeeeeeec
Q psy11549        227 RVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       227 ~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                        +|.|.|..+ +..+..+.+...
T Consensus       153 --~C~a~n~~~-~~~s~~~~l~V~  173 (204)
T 3sgj_C          153 --FCRGLVGSK-NVSSETVQITIT  173 (204)
T ss_dssp             --EEEEEETTE-EEECCCEEEEEE
T ss_pred             --EEEEEeCCC-ceecCcEEEEEe
Confidence              999999544 223333333333

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.75  E-value=3.8e-17  Score=132.99  Aligned_cols=210  Identities=12%  Similarity=0.082  Sum_probs=118.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe------------------eceeecCceeEEEeeCCCcEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY------------------APICKSDRIVIVGASRSESVDIHCA   82 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~------------------~p~~~~~~~~~~~~~~g~~~~l~C~   82 (261)
                      .|.|.++..+|+|.|+|.|.|..+...+..+.|.|..                  +|.+.........+..|+.+.|.|.
T Consensus       191 ~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~  270 (475)
T 1iga_A          191 QLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCT  270 (475)
T ss_pred             EEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEE
Confidence            6889999999999999999998875434444433311                  2322111111122578999999999


Q ss_pred             EeeCCC--CceeEEEEcCCccccccCCceEE-e-C---CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE-EeC
Q psy11549         83 VEADPP--ARSFKWKFNNSGETLDVGSERFS-S-G---SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV-VLA  154 (261)
Q Consensus        83 ~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~-~-~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v-~~~  154 (261)
                      +.+.++  +..+.| .++ . .......... . .   ...+.|.|.++..+|.|.|+|.|.|..+.......+.+ .+.
T Consensus       271 ~~g~~p~~~~~i~W-~~~-~-~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~  347 (475)
T 1iga_A          271 LTGLRDASGVTFTW-TPS-S-GKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNT  347 (475)
T ss_pred             EEcccCCCceEEEE-CCC-C-cCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCC
Confidence            998754  248999 332 1 1111110000 0 1   12346999999999999999999998876543322222 112


Q ss_pred             CCCC----CCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCcccee-E-E--EecC---CC------CcEEEc
Q psy11549        155 GKPQ----PPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLL-V-N--LTNL---DT------PAFTLE  216 (261)
Q Consensus       155 ~~p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~-~-~--~~~~---~~------~~~~i~  216 (261)
                      .+|.    ++....+  ..|..+.|.|.+  .+..|. ..+.|+++....... . .  ....   ..      ..+.|.
T Consensus       348 ~~P~v~~~~~~~~~v--~~g~~~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~  423 (475)
T 1iga_A          348 FRPEVHLLPPPSEEL--ALNELVTLTCLA--RGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVA  423 (475)
T ss_pred             CCCeEEEECCChHHh--ccCCceEEEEEE--eeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEC
Confidence            2232    1111111  247889999997  444443 233444443221111 0 0  0111   11      234555


Q ss_pred             CCCCCCccEEEEEEEEEcCCCcC
Q psy11549        217 DLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       217 ~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      .....++|.|  +|.|.|.....
T Consensus       424 ~~~~~~~g~Y--tC~a~n~~l~~  444 (475)
T 1iga_A          424 AEDWKKGDTF--SCMVGHEALPL  444 (475)
T ss_pred             hHHhcCCCEE--EEEEEcCCCCC
Confidence            5445678999  99999988653

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.75  E-value=1.3e-16  Score=122.93  Aligned_cols=168  Identities=16%  Similarity=0.159  Sum_probs=117.1

Q ss_pred             EEeeCCCcEEEEEEEeeC-----CCCceeEEEEcCCccccccCCceEEeCCc-eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         69 VGASRSESVDIHCAVEAD-----PPARSFKWKFNNSGETLDVGSERFSSGSR-GSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ..+..|++++|.|.+.+.     +.+ .+.|++++.  .+.....+....+. .+.|.|.++...|+|.|.|.+.+..+.
T Consensus        10 ~~v~~G~~v~l~C~~~~~~~~~~~~~-~i~W~~~g~--~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~   86 (313)
T 2d9q_B           10 PIVHLGDPITASCIIKQNCSHLDPEP-QILWRLGAE--LQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ   86 (313)
T ss_dssp             SEECTTCCEEEEECCCTTSCSSCSCS-CCEEESSSC--BCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE
T ss_pred             cEEcCCCCEEEEEEECCCCCCCCccc-ceEEEeCCE--ECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce
Confidence            346799999999999986     345 799998874  22211111112222 257999999999999999988764443


Q ss_pred             EEeeEEEEEEeCCCCCCCCcceEEee-cCCeEEEEeecCCCCCCCeEEEEEEEeCCcc----ceeE-EE-ecCCCCcEEE
Q psy11549        143 QVTPCLYQVVLAGKPQPPQNCSVRNE-TTSSVHISCTPGYDGGLPQTFTLELYSASDL----NLLV-NL-TNLDTPAFTL  215 (261)
Q Consensus       143 ~~~~~~~~v~~~~~p~~p~~~~v~~~-~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~----~~~~-~~-~~~~~~~~~i  215 (261)
                      .  ...+.+.+..+|.+|.++..... ....++++|.++.+++.+..|.+.|+.....    ...+ .. .......+.+
T Consensus        87 ~--~~~~~l~v~~~P~~P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (313)
T 2d9q_B           87 I--LDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSI  164 (313)
T ss_dssp             E--EEEEEEEECCCCCCCEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCTTSCSCCCCEEEECCCTTCSEEEE
T ss_pred             e--EEEEEEccCCCCCCCccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecCCCcccCCcccccCCCCCCCcEEEE
Confidence            3  33556777789999998887655 3579999999887777788899988765421    1112 11 1122345666


Q ss_pred             cCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549        216 EDLGLDGTVLMRVVISGVNAKGRSLP  241 (261)
Q Consensus       216 ~~~~l~~~~~Y~~~~~a~N~~G~~~~  241 (261)
                      ....|.+...|+|+|.|.|.+|.+.+
T Consensus       165 ~~~~L~~~~~Y~f~V~A~N~~G~~~s  190 (313)
T 2d9q_B          165 PRKHLLLYQNMGIWVQAENALGTSMS  190 (313)
T ss_dssp             EGGGCCSSSCEEEEEEEEETTEEEEC
T ss_pred             CccccccceeEEEEEEEECCCCCccC
Confidence            44348999999999999999998643

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.75  E-value=5.3e-17  Score=117.81  Aligned_cols=167  Identities=13%  Similarity=0.073  Sum_probs=110.0

Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      .++.+.|.|.+.+.+++..+.|++++.... ......+...+....|.|.++..+|+|.|+|.+.+..+....  .+.+.
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~--~~~l~   92 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIR-YSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQK--TVDLS   92 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECC-CCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEE--EEEEC
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEcc-CCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEE--EEEEE
Confidence            678889999998866544899999874221 122223344455567999999999999999999998776665  44443


Q ss_pred             eCC--------------------CCC----CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--eE--E
Q psy11549        153 LAG--------------------KPQ----PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--LV--N  204 (261)
Q Consensus       153 ~~~--------------------~p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~~--~  204 (261)
                      +..                    .|.    .|..  +....|+.+.|.|.+  . +.|.....|+++......  ..  .
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~v~~g~~~~l~C~~--~-g~p~p~v~W~~~~~~~~~~~~~~~~  167 (212)
T 2r15_A           93 GQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDV--VTIQEGKALNLTCNV--W-GDPPPEVSWLKNEKALAQTDHCNLK  167 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSE--EEEETTCCEEEEEEE--E-CSSCCEEEEEETTEEECCCSSEEEE
T ss_pred             EeeccchhhhccccCcccccccCCCcccccCCCc--EEEccCCeEEEEEEE--c-CCCCceEEEEECCeECccCCCEEEE
Confidence            321                    111    2222  333569999999997  3 444333444444322110  11  1


Q ss_pred             EecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        205 LTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       205 ~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      ........|.|.+++..|.|.|  +|.|.|..|....+..+.+..
T Consensus       168 ~~~~~~~~L~i~~~~~~d~G~Y--~C~a~N~~g~~~~~~~l~V~~  210 (212)
T 2r15_A          168 FEAGRTAYFTINGVSTADSGKY--GLVVKNKYGSETSDFTVSVFI  210 (212)
T ss_dssp             EETTTEEEEEESSCCGGGCEEE--EEEEEETTEEEEEEEEEEEEC
T ss_pred             EcCCCEEEEEEcCcchHHCeEE--EEEEEcCCCcEEEEEEEEEEc
Confidence            2212335899999999999999  999999999887777766653

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.75  E-value=4.8e-18  Score=125.78  Aligned_cols=152  Identities=16%  Similarity=0.174  Sum_probs=96.2

Q ss_pred             CCCCeeccCCCC-ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCc-ceeeeEEEEEEe---eceeecCceeEEEeeCCC
Q psy11549          1 MAGGIPLAHNTS-ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKY---APICKSDRIVIVGASRSE   75 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~-~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~   75 (261)
                      ||||.++..... ......++.|.|.+++.+|+|.|+|.+.+..+. ..+..+.|.|..   +|.+...+.  ..+.+|+
T Consensus        40 ~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~--~~v~~G~  117 (242)
T 1p6f_A           40 HFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG--PEVISGE  117 (242)
T ss_dssp             EETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESC--SEEETTC
T ss_pred             EECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCC--CccCCCC
Confidence            467766631111 011123458999999999999999999876432 235667888874   444442221  3467999


Q ss_pred             cEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC-ceEEeeEEEEEEeC
Q psy11549         76 SVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI-GTQVTPCLYQVVLA  154 (261)
Q Consensus        76 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~-~~~~~~~~~~v~~~  154 (261)
                      +++|.|.+.+.+ + .+.|++++.....     ..........|.|.++..+|+|.|+|.+.+.. .....+..+.+.|.
T Consensus       118 ~vtL~C~~~~~~-~-~~~w~k~g~~~~~-----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  190 (242)
T 1p6f_A          118 KVTFYCRLDTAT-S-MFLLLKEGRSSHV-----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  190 (242)
T ss_dssp             EEEEEEECTTSC-S-EEEEEECSSSCEE-----EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             cEEEEEecCCCC-C-EEEEEECCCccCc-----cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEe
Confidence            999999987543 3 8999998753221     12233445689999999999999999998853 12222335556665


Q ss_pred             CCCCCCC
Q psy11549        155 GKPQPPQ  161 (261)
Q Consensus       155 ~~p~~p~  161 (261)
                      .++..|.
T Consensus       191 ~~~~~P~  197 (242)
T 1p6f_A          191 GDIENTS  197 (242)
T ss_dssp             C------
T ss_pred             ccCCCCc
Confidence            6555443

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.75  E-value=3.6e-17  Score=115.59  Aligned_cols=117  Identities=14%  Similarity=0.236  Sum_probs=84.2

Q ss_pred             CCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcce-eeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCC
Q psy11549         11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPA   89 (261)
Q Consensus        11 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~   89 (261)
                      ..|.....+++|.|.+++.+|+|.|+|.+.|..|... +..+.|.|..+.  .. + . +.. .+..+.|.|.+.+.|.+
T Consensus        57 ~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~--~~-P-~-i~~-~~~~v~L~C~~~~~p~~  130 (182)
T 1hnf_A           57 KDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV--SK-P-K-ISW-TCINTTLTCEVMNGTDP  130 (182)
T ss_dssp             CTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCC--CC-C-E-EEE-ETTTTEEEEECSSCSSC
T ss_pred             CCeEEECCCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcC--CC-C-E-EEE-ccCcEEEEeEccCCCCC
Confidence            4567777889999999999999999999999887753 356777776431  11 1 1 222 34479999999988866


Q ss_pred             ceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         90 RSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        90 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                       ++.|++++..  +..       ..  ..+.+.. ..+|.|.|+|.|.|..+.....
T Consensus       131 -~~~W~~~g~~--l~~-------~~--~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~  174 (182)
T 1hnf_A          131 -ELNLYQDGKH--LKL-------SQ--RVITHKW-TTSLSAKFKCTAGNKVSKESSV  174 (182)
T ss_dssp             -EEEEEESSCE--EEE-------ES--SCEEEEC-CSCEEEEEEEEEECSSCEEEEE
T ss_pred             -EEEEEECCEE--CCC-------CC--cEEEEec-ccCCCcEEEEEEEeCCCCcEEc
Confidence             8999998742  211       11  1233333 4789999999999999887764

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.75  E-value=2e-17  Score=127.18  Aligned_cols=141  Identities=12%  Similarity=0.136  Sum_probs=96.9

Q ss_pred             CCCCeeccCCCCceEEEEC---C--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE-------------------
Q psy11549          1 MAGGIPLAHNTSARIILSN---Q--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK-------------------   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~---~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~-------------------   56 (261)
                      +|||+++..+.. ..+..+   +  +|.|.+++.+|+|.|+|.+.+.....   ...+.+.                   
T Consensus       143 ~~~~~~i~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (312)
T 2y23_A          143 IFNEKEIFEGPK-YKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATN---HSTVVLVGDVFKKLQKEAEFQRQEWI  218 (312)
T ss_dssp             EETTEEECSSSS-CEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEE---EEEEEECTHHHHHHHHHHHHHHHHHH
T ss_pred             EECCEECeeCCc-EEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceE---EEEEEEcchhhhhhcccccccccchh
Confidence            478888875433 333332   2  39999999999999999997654332   2333331                   


Q ss_pred             --eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEE
Q psy11549         57 --YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        57 --~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                        .+|.+.... . ..+..|+.+.|.|.+.+.|++..+.|++++..  +.. ..++........|.|.++..+|+|.|+|
T Consensus       219 ~~~~p~~~~~~-~-~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~--~~~-~~~~~~~~~~~~L~I~~v~~~d~G~Y~C  293 (312)
T 2y23_A          219 RKQGPHFVEYL-S-WEVTGECNVLLKCKVANIKKETHIVWYKDERE--ISV-DEKHDFKDGICTLLITEFSKKDAGIYEV  293 (312)
T ss_dssp             HHHSSEEEEEE-E-EEEETTTEEEEEEEEESCCSSCEEEEEETTEE--EEE-ECCC----CEEEEEECSCSGGGCEEEEE
T ss_pred             hccCCceeecc-e-EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEE--CCC-CCcEEEECCEEEEEECcCCHHHCEEEEE
Confidence              123333221 2 56789999999999999888768999998742  221 2233333445689999999999999999


Q ss_pred             EEEcCCceEEeeEEEE
Q psy11549        135 AAQNAIGTQVTPCLYQ  150 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~  150 (261)
                      .|.|..|.......+.
T Consensus       294 ~a~N~~G~~~~~~~l~  309 (312)
T 2y23_A          294 ILKDDRGKDKSRLKLV  309 (312)
T ss_dssp             EEESTTCCEEEEEEEC
T ss_pred             EEEcCCCceeeeeEEE
Confidence            9999999888754443

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.75  E-value=8e-18  Score=118.70  Aligned_cols=143  Identities=13%  Similarity=0.088  Sum_probs=95.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+.+|+.+.|.|.+.+.+.+..+.|++++..  +.         .....|.|.++..+|+|.|+|.+.+..+...  ..
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~--~~---------~~~~~L~i~~v~~~d~G~Y~C~~~~~~~s~~--~~   80 (176)
T 1f2q_A           14 NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSL--SE---------ETNSSLNIVNAKFEDSGEYKCQHQQVNESEP--VY   80 (176)
T ss_dssp             SEEETTCCEEEECCTTCC----CCEEEETTEE--CS---------CCSSEEEECSCCGGGCEEEEEECTTSSCCCC--EE
T ss_pred             cceecCCcEEEEEeCCCCCCcceEEEEECCeE--CC---------CCceEEEEeccceecCEEEEEEcCCcccccc--EE
Confidence            45789999999999998887657999997742  11         1234799999999999999999998654332  24


Q ss_pred             EEEEeCCCCC--CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        149 YQVVLAGKPQ--PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       149 ~~v~~~~~p~--~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      +.+.  .++.  .+....+  ..|+.+.|.|.+  ..+.|.....|+++....     ........|.|.+++..|.|.|
T Consensus        81 l~V~--~~~~~~~~~~~~~--~~g~~~~l~C~~--~~~~p~~~~~W~~~g~~~-----~~~~~~~~L~i~~v~~~d~G~Y  149 (176)
T 1f2q_A           81 LEVF--SDWLLLQASAEVV--MEGQPLFLRCHG--WRNWDVYKVIYYKDGEAL-----KYWYENHNISITNATVEDSGTY  149 (176)
T ss_dssp             EEEE--CSSEEEEESCSEE--ETTSCEEEEEEE--GGGCCEEEEEEEETTEEC-----CSCCCSSEEEESSCCGGGCEEE
T ss_pred             EEEe--CcceeecCCccee--eCCCCEEEEEEe--cCCCCceEEEEEECCEEE-----eeecCCCeEEECCCCcccCEEE
Confidence            4443  2221  1111223  469999999997  455665544454533221     1123457899999999999999


Q ss_pred             EEEEEEEcCCC
Q psy11549        227 RVVISGVNAKG  237 (261)
Q Consensus       227 ~~~~~a~N~~G  237 (261)
                        +|.|.|..|
T Consensus       150 --~C~a~n~~~  158 (176)
T 1f2q_A          150 --YCTGKVWQL  158 (176)
T ss_dssp             --EEEEEETTE
T ss_pred             --EEEEEeCCc
Confidence              999999754

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.75  E-value=1.1e-16  Score=118.41  Aligned_cols=173  Identities=14%  Similarity=0.095  Sum_probs=107.4

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+..|++++|.|.+...  +..+.|++++........  ..........|.|.++..+|+|.|+|.+.+..+....+..+
T Consensus        17 ~v~~G~~VtL~C~~~~~--~~~~~w~k~g~~~~~~~~--~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~   92 (242)
T 1p6f_A           17 MVPKEKQVTICCQGNYG--AVEYQLHFEGSLFAVDRP--KPPERINKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLL   92 (242)
T ss_dssp             EEETTCCEEEEEECCTT--CCEEEEEETTEEEEEECC--SSCTTCCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCE
T ss_pred             ccCCCCcEEEEEeeCCC--CcEEEEEECCCccccccc--cccCCcceeEEEecCCCcccCeEEEEEEecCCccccCCcce
Confidence            46799999999998643  337999998743211101  11112334579999999999999999998764433222234


Q ss_pred             EEEeCCCCCCCCcc---eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        150 QVVLAGKPQPPQNC---SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       150 ~v~~~~~p~~p~~~---~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      .+.|...+..|...   ......|+.++|.|.+  .. .+..|.| +++....... .........|.|.+++..|+|.|
T Consensus        93 ~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~--~~-~~~~~~w-~k~g~~~~~~-~~~~~~~~~l~I~~v~~~d~G~Y  167 (242)
T 1p6f_A           93 DLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL--DT-ATSMFLL-LKEGRSSHVQ-RGYGKVQAEFPLGPVTTAHRGTY  167 (242)
T ss_dssp             EEEEECCSCCCEEEEESCSEEETTCEEEEEEEC--TT-SCSEEEE-EECSSSCEEE-EEECSSEEEEEEEECCGGGCEEE
T ss_pred             EEEeecccCCCceEccCCCccCCCCcEEEEEec--CC-CCCEEEE-EECCCccCcc-ccCCCceEEEEeCCCccccCEEE
Confidence            44444332222211   0112469999999997  33 3344544 4544333221 11233457899999999999999


Q ss_pred             EEEEEEEcCC-CcCCceeeeeeeecccc
Q psy11549        227 RVVISGVNAK-GRSLPVIWDDFSMSGAH  253 (261)
Q Consensus       227 ~~~~~a~N~~-G~~~~s~~~~~~~~~~~  253 (261)
                        +|.|.|.. ..+..|..+++...++.
T Consensus       168 --~C~a~n~~~~~s~~S~~~~l~V~~~~  193 (242)
T 1p6f_A          168 --RCFGSYNNHAWSFPSEPVKLLVTGDI  193 (242)
T ss_dssp             --EEEEEEETTEECCCCCCEEEEEEC--
T ss_pred             --EEEEECCCCcccCCCCCEEEEEeccC
Confidence              88898874 46677777777665543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.74  E-value=1.7e-19  Score=141.02  Aligned_cols=199  Identities=17%  Similarity=0.146  Sum_probs=128.5

Q ss_pred             CCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceE
Q psy11549         31 SAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF  110 (261)
Q Consensus        31 D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~  110 (261)
                      |.|.|+|.+.+...     .+.+.+..+|.+...+.. ..+.+|+.+.|.|.+.+.|.+ .+.|++++.......   ..
T Consensus       136 ~~~~~~C~~~~~l~-----~l~~~~c~~P~i~~~~~~-~~v~~G~~v~L~C~~~g~p~p-~i~W~~~~~~~~~~~---~~  205 (347)
T 2ifg_A          136 PEQKLQCHGQGPLA-----HMPNASCGVPTLKVQVPN-ASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQSATV---MK  205 (347)
T ss_dssp             GGGCCCCSSSSCSS-----CCCCTTCCCCEEEEECCS-SCCBTTCCEEEEEEEECSSCC-CCCEEESCCCSSEEE---CC
T ss_pred             cccCCCCCCChHHh-----cCCcccCCCCceeccCCc-eEEeCCCcEEEEEEEecCCCC-EEEEEcCCceeeccc---cc
Confidence            67999998876221     122233345555443333 567899999999999998887 899999874321111   11


Q ss_pred             EeCCceeEEEEecCCCCcCe-EEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEE
Q psy11549        111 SSGSRGSMLRYTPVTELDYG-TLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTF  189 (261)
Q Consensus       111 ~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~  189 (261)
                      ........|.|.++..+|+| .|+|.|.|..|....  .+.+.|..+|..   .......|..++|.|.+  .+. |...
T Consensus       206 ~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~--~~~l~V~~~P~i---~~~~~~~g~~v~l~C~~--~g~-P~p~  277 (347)
T 2ifg_A          206 SGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV--SVQVNVSFPASV---QLHTAVEMHHWCIPFSV--DGQ-PAPS  277 (347)
T ss_dssp             CCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCE--EECCCCBEEEEE---EECCCEESSSEEEEEEE--EEE-SCCE
T ss_pred             ceecccceEEEeeCChHHCCCeEEEEEEcCCCCEEE--EEEEEEcCCCee---eeccCccCceEEEEEEe--eec-CCCc
Confidence            12334558999999999999 999999999877655  444555444442   11112348999999997  333 4433


Q ss_pred             EEEEEeCCccc---eeE-EEec------CCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        190 TLELYSASDLN---LLV-NLTN------LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       190 ~~~~~~~~~~~---~~~-~~~~------~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      +.|++......   ... ....      .....+.|.+++..|+|.|  +|.|.|.+|....+..+.|..
T Consensus       278 i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y--~C~a~N~~G~~~~~~~l~V~~  345 (347)
T 2ifg_A          278 LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY--TLLAANPFGQASASIMAAFMD  345 (347)
T ss_dssp             EEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEE--EEEEEETTEEEEEEEEECSCC
T ss_pred             EEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceE--EEEEecCCCceeeEEEEEecC
Confidence            34444422211   011 1111      1134599999999999999  999999999887777776653

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.74  E-value=3.2e-17  Score=116.44  Aligned_cols=116  Identities=14%  Similarity=0.186  Sum_probs=86.6

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      .+|.|.+++.+|+|.|+|.+.|..+     .+.|.|...+.   +..  ..+..|+.++|.|.+.+.|.+ .+.|++++.
T Consensus        68 ~~L~i~~v~~~D~G~Y~C~~~~~~~-----~~~l~V~~~~~---~~~--~~v~~g~~~~l~C~~~~~p~~-~v~W~~~~~  136 (184)
T 2ny1_B           68 FPLIIKNLKIEDSDTYICEVEDQKE-----EVQLLVFGLTA---NSD--THLLQGQSLTLTLESPPGSSP-SVQCRSPRG  136 (184)
T ss_dssp             CCEEECSCCGGGCEEEEEEETTEEE-----EEEEEEEEEEE---SSC--SEEETTCCEEEEEECCTTCCC-EEEEECTTS
T ss_pred             EEEEEecCCHHHCEEEEEEEEcCCC-----cEEEEEEEecC---CCC--ceeecCCCEEEEEEcCCCCCC-EEEEEeCCC
Confidence            3599999999999999999987642     45677764332   111  346799999999999988777 899998764


Q ss_pred             ccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCC
Q psy11549        100 GETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP  159 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~  159 (261)
                      ..         .  .....|.|.++..+|+|.|+|.|.|..+....  .+.+.|...|.+
T Consensus       137 ~~---------~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~--~~~l~V~~~p~~  183 (184)
T 2ny1_B          137 KN---------I--QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEF--KIDIVVLAFQKA  183 (184)
T ss_dssp             CE---------E--EESSEEEESSCCGGGCEEEEEEEEETTEEEEE--EEEEEEECCCC-
T ss_pred             cc---------c--cCceEEEEecCCcCCCeEEEEEEEECCceEEE--EEEEEEEecCCC
Confidence            21         1  12237999999999999999999998777666  445555565553

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.74  E-value=2.4e-17  Score=115.50  Aligned_cols=121  Identities=14%  Similarity=0.198  Sum_probs=87.8

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~   80 (261)
                      +|||+++...        ...+.|.+++.+|+|.|+|.+.+...   +..+.|.|..++.......  ..+..|+.+.|.
T Consensus        40 ~~~g~~~~~~--------~~~~~~~~~~~~d~G~Y~C~~~~~~~---s~~~~l~v~~~~~~~~~~~--~~~~~g~~~~l~  106 (170)
T 3ry4_A           40 FHNGNLIPTH--------TQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLTVLFEWLVLQTPH--LEFQEGETIMLR  106 (170)
T ss_dssp             EETTEECTTC--------CSSEEEEECCGGGCEEEEEEETTSBC---CCCEEEEEECCSEEEECSC--SEECTTCCEEEE
T ss_pred             EECCeEcccC--------ccceEEEecccccCeEEEEEEeCCCc---eEeEEEEEECCceEecCCC--ceeecCCeEEEE
Confidence            3566666432        34577889999999999999986433   4457888887665544332  346789999999


Q ss_pred             EEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         81 CAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        81 C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      |.+.+.+++..+.|++++....         .......|.|.++..+|+|.|+|.+.|..|..
T Consensus       107 C~~~~~~p~~~~~W~~~g~~~~---------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  160 (170)
T 3ry4_A          107 CHSWKDKPLVKVTFFQNGKSQK---------FSHLDPTFSIPQANHSHSGDYHCTGNIGYTLF  160 (170)
T ss_dssp             EEEGGGCCEEEEEEEETTEEEE---------EESSCCEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             EECCCCCCCceEEEEECCeEcc---------ccCCCCeEEEEeccccCCEEEEEEEEeCcCcc
Confidence            9996555434899999764211         11123469999999999999999999988763

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.74  E-value=2.1e-16  Score=115.98  Aligned_cols=173  Identities=15%  Similarity=0.095  Sum_probs=103.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCC--ceeEEEEcCCcccccc--------------CCceEE-----eCCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPPA--RSFKWKFNNSGETLDV--------------GSERFS-----SGSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~--------------~~~~~~-----~~~~~~~l~i~~~~~~  127 (261)
                      +.+..|++++|.|.+.+.+.+  ..+.|++++.......              ...+..     .......|.|.++..+
T Consensus        14 V~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   93 (226)
T 4f80_A           14 ILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTAS   93 (226)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCchH
Confidence            667899999999999866543  3699998764221100              001111     1223568999999999


Q ss_pred             cCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc-ceeE-EE
Q psy11549        128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL-NLLV-NL  205 (261)
Q Consensus       128 d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~-~~~~-~~  205 (261)
                      |+|.|+|.|.|..+....  .+.+.+..++..+. .......|..+.|.|.+  .++.|..-+.|++..+.. .... ..
T Consensus        94 D~G~Y~C~a~n~~~~~~~--~v~~~~~~~~~~~~-~~~~~~~g~~v~l~c~~--~g~~P~p~i~W~k~~~~~~~~~~~~~  168 (226)
T 4f80_A           94 DSGKYLCYFQDGDFYEKA--LVELKVAALGSDLH-VDVKGYKDGGIHLECRS--TGWYPQPQIQWSNNKGENIPTVEAPV  168 (226)
T ss_dssp             GCEEEEEEEEETTEEEEE--EEEEEEEBCCCCCE-EEEEEEETTEEEEEEEE--EEEBSCCEEEEECTTSCBCCCEECCC
T ss_pred             HCeeEEEEEECCCcEEEE--EEEEeeccceeccc-ceeeeccCCceeeEEEe--ccCCCCCEEEEEECCceEcCCCceEE
Confidence            999999999998776655  44444433333222 23334569999999997  454454434444433222 1111 11


Q ss_pred             ecCCCCcE---EEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        206 TNLDTPAF---TLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       206 ~~~~~~~~---~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .......+   .+..++..|+|.|  +|.|.|.+|..+.+..+.+.
T Consensus       169 ~~~~~g~~~v~s~l~v~~~d~G~Y--tC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          169 VADGVGLYAVAASVIMRGSSGEGV--SCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             EECTTSCEEEEEEEEECC----CE--EEEEEETTTTEEEEEEECCC
T ss_pred             EECCCCcEEEEEEEEechhcCcEE--EEEEEeCCCCeEEEEEEEEC
Confidence            22222322   2334557899999  99999999987776666553

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.74  E-value=4.1e-18  Score=121.09  Aligned_cols=116  Identities=19%  Similarity=0.201  Sum_probs=83.5

Q ss_pred             EECCeEEEccCCCCCCEeEEEEEEeCCCc-ceeeeEEEEEEe---eceeecCceeEEEeeCCCcEEEEEEEeeCCCCcee
Q psy11549         17 LSNQSLVLQKVSRQSAGTYKCSAINTKGE-ATSNQLKLRVKY---APICKSDRIVIVGASRSESVDIHCAVEADPPARSF   92 (261)
Q Consensus        17 ~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~-~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~   92 (261)
                      ..+++|.|.+++.+|+|.|+|.+.|..|. ..+..+.|.|..   +|.+...+ . ..+..|++++|.|.+.+.+ + .+
T Consensus        49 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p-~-~~v~~G~~v~l~C~~~~~~-~-~~  124 (184)
T 2gi7_A           49 QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP-G-PAVSSGGDVTLQCQTRYGF-D-QF  124 (184)
T ss_dssp             ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC-C-CSSCCTTCEEEEEECSSCC-C-EE
T ss_pred             CcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC-C-ceecCCCcEEEEEEcCCCC-c-EE
Confidence            34578999999999999999999998763 235567788753   34443222 1 3467899999999987654 4 89


Q ss_pred             EEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         93 KWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        93 ~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .|++++.....  .. .  .......|.|.++..+|+|.|+|.|.|..+
T Consensus       125 ~w~k~g~~~~~--~~-~--~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          125 ALYKEGDPAPY--KN-P--ERWYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEEECCCCTTS--CC-C--CEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             EEEECCCcCcc--ee-c--CCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            99998753221  11 1  112234688999999999999999999753

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.74  E-value=1.9e-17  Score=116.70  Aligned_cols=161  Identities=13%  Similarity=0.093  Sum_probs=102.2

Q ss_pred             EEeeCCCcEEEEEEEee-CCCCceeEEEEcCCccc-------cccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         69 VGASRSESVDIHCAVEA-DPPARSFKWKFNNSGET-------LDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +.+.+|+.+.|.|.... ..+...+.|++++....       ......++...... .|.|.++..+|+|.|+|.+.|..
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g-sL~I~~v~~~D~G~Y~C~~~n~~   84 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG-DLKIKNLTRDDSGTYNVTVYSTN   84 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS-CEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC-cEEEcccccccCEEEEEEEEeCC
Confidence            56779999999994322 22333899999873110       00123344442222 49999999999999999999988


Q ss_pred             ceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCC
Q psy11549        141 GTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGL  220 (261)
Q Consensus       141 ~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l  220 (261)
                      |.......+.+.+..++..|.   +. ..+..+.|.|.+  .+..++.+.| +++....    ...    ..+.|..++.
T Consensus        85 g~~~~~~~~~l~V~~~~~~p~---i~-~~~~~v~L~C~~--~g~p~p~i~W-~~~g~~l----~~~----~~~~i~~~~~  149 (176)
T 1hng_A           85 GTRILNKALDLRILEMVSKPM---IY-WECSNATLTCEV--LEGTDVELKL-YQGKEHL----RSL----RQKTMSYQWT  149 (176)
T ss_dssp             CCEEEEEEEEEEEECCCCCCE---EE-EETTTTEEEEEC--SSCSSCEEEE-EETTEEE----EEE----SSSEEEEECS
T ss_pred             CCEEEEEEEEEEEeCCCCCCE---EE-ecCCcEEEEEEe--cCCCCcEEEE-EECCEEC----CCC----CcEEEEEEEc
Confidence            876333355666655555443   22 225569999997  4444444444 3432211    111    1244556669


Q ss_pred             CCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        221 DGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       221 ~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      .|.|.|  +|.|.|.+|....+..+.+
T Consensus       150 ~d~G~Y--~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          150 NLRAPF--KCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             CCSSCE--EEEEEETTEEEEEEECCCC
T ss_pred             cCCeEE--EEEEEecCCCceecccccC
Confidence            999999  9999999998776665543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.74  E-value=8e-17  Score=121.20  Aligned_cols=174  Identities=16%  Similarity=0.136  Sum_probs=110.6

Q ss_pred             EEeeCCCcEEEEEEEe---eCCCCceeEEEEcCCcccccc---------------CCceEEe----CCceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVE---ADPPARSFKWKFNNSGETLDV---------------GSERFSS----GSRGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~---~~~~~~~~~W~~~~~~~~~~~---------------~~~~~~~----~~~~~~l~i~~~~~  126 (261)
                      +.+.+|+.+.|.|.+.   +.+.+ .+.|++.+.......               ...++..    ......|.|.++..
T Consensus        15 ~~v~~G~~v~L~C~~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   93 (268)
T 3mj6_A           15 LRVHVGESVLMGCVVQRTEEKHVD-RVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQK   93 (268)
T ss_dssp             EEEETTCCEEECCBCCCSSCCCEE-EEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCEEECSCCG
T ss_pred             eEEecCCcEEEEEEeecCCCCceE-EEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEEEECCCCH
Confidence            6788999999999987   44444 799998653211100               0012222    12235799999999


Q ss_pred             CcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeEE-
Q psy11549        127 LDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLVN-  204 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~~-  204 (261)
                      +|+|.|+|.+.+..+.......+.+.+.  |..|....+  ..|+.++|.|.+....+.|. .+.|.+........... 
T Consensus        94 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~~p~~~~v--~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~  169 (268)
T 3mj6_A           94 ADEGIYTCEIRLKNESMVMKKPVELWVL--PEEPRDLRV--RVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVL  169 (268)
T ss_dssp             GGCEEEEEEEEETTCCCEEEEEEEEEEE--CCCCSEEEE--ETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEE
T ss_pred             hHCEEEEEEEEecCCcceEEEEEEEEEe--ccCCCcccc--ccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEE
Confidence            9999999999987555444334555543  445554444  56999999999732234444 44444323221110000 


Q ss_pred             ----------------------Ee---cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        205 ----------------------LT---NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       205 ----------------------~~---~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                                            ..   ......|.|.+++.+|.|.|  +|.|.|..|....+..+.+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y--~C~a~n~~g~~~~~~~l~V~~  237 (268)
T 3mj6_A          170 SYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIY--TCSIYVGKLESRKTIVLHVVQ  237 (268)
T ss_dssp             EEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEE--EEEEEETTEEEEEEEEEEEEC
T ss_pred             EecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEE--EEEEEcCCceEEEEEEEEEEc
Confidence                                  00   12356899999999999999  999999988777776666643

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.74  E-value=6.4e-17  Score=113.94  Aligned_cols=144  Identities=16%  Similarity=0.164  Sum_probs=97.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+.+|+.++|.|.+.+.+.+..+.|++++..  +.         .....|.|.++..+|+|.|+|.+.+..+  .....
T Consensus        17 ~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~--~~---------~~~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~   83 (175)
T 1fnl_A           17 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESL--IS---------SQASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQ   83 (175)
T ss_dssp             SEEETTCCEEEEEECCCBTTBCCCEEEETTEE--EE---------SSCSEEEESSCCGGGCEEEEEECSSSCC--CCCEE
T ss_pred             eeeeCCCcEEEEeeCCCCCCCcceEEEECCEE--cc---------CCceEEEEeCCCcccCEEEEEEeeCCcc--cccEE
Confidence            35779999999999999887645899998732  21         1234799999999999999999998544  23224


Q ss_pred             EEEEeCCCCC--CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        149 YQVVLAGKPQ--PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       149 ~~v~~~~~p~--~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      +.|.  .++.  .+....+  ..|+.+.|.|.+  .++.|..-..|+++....  ..   ......|.|.+++.+|.|.|
T Consensus        84 l~V~--~~~~~~~~~~~~~--~~g~~~~l~C~~--~~~~~~~~~~W~k~g~~~--~~---~~~~~~L~i~~v~~~d~G~Y  152 (175)
T 1fnl_A           84 LEVH--IGWLLLQAPRWVF--KEEDPIHLRCHS--WKNTALHKVTYLQNGKDR--KY---FHHNSDFHIPKATLKDSGSY  152 (175)
T ss_dssp             EEEE--CSSEEEECSCSEE--ETTCCEEEEEEE--CTTCCCEEEEEEETTEEE--EE---EEECCCEEESSCCGGGCEEE
T ss_pred             EEEe--CCCceeeCCCcee--cCCCCEEEEEEc--CCCCCceEEEEEECCeEc--cC---CCCCCEEEEcccChhhCeEE
Confidence            4443  2221  1112223  459999999997  455554333444433222  11   12347899999999999999


Q ss_pred             EEEEEEEcCCCc
Q psy11549        227 RVVISGVNAKGR  238 (261)
Q Consensus       227 ~~~~~a~N~~G~  238 (261)
                        +|.|.|..|.
T Consensus       153 --~C~a~n~~~~  162 (175)
T 1fnl_A          153 --FCRGLVGSKN  162 (175)
T ss_dssp             --EEEEEETTEE
T ss_pred             --EEEEEcCCCC
Confidence              9999998663

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=7.2e-18  Score=125.81  Aligned_cols=165  Identities=16%  Similarity=0.196  Sum_probs=89.0

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCC----cceeeeEEEEEEee---ceeecCceeEEEeeCCCcEEEEEEEeeCCCCc
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKG----EATSNQLKLRVKYA---PICKSDRIVIVGASRSESVDIHCAVEADPPAR   90 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~----~~~s~~~~l~V~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~   90 (261)
                      .++.|.|.+++.+|+|.|+|.+.+...    ...+..+.|.|...   |.+...+.  ..+.+|++++|.|.+.+.+ + 
T Consensus        60 ~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~--~~V~~G~~vtL~C~~~~~~-~-  135 (257)
T 1b6u_A           60 SKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG--PTVLAGESVTLSCSSRSSY-D-  135 (257)
T ss_dssp             EEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC--TTCBTTCEEEEEEECSSCC-S-
T ss_pred             ceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCC--CccCCCCEEEEEEeCCCCC-c-
Confidence            346899999999999999999986432    22356678888743   44443322  2467999999999988754 3 


Q ss_pred             eeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc---eEEeeEEEEEEeCCCCCCC--CcceE
Q psy11549         91 SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG---TQVTPCLYQVVLAGKPQPP--QNCSV  165 (261)
Q Consensus        91 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~---~~~~~~~~~v~~~~~p~~p--~~~~v  165 (261)
                      .+.|++++....................|.|.++.  |+|.|+|.+.+...   ....+..+.+.|.++|...  .....
T Consensus       136 ~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~  213 (257)
T 1b6u_A          136 MYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEP  213 (257)
T ss_dssp             EEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC----------
T ss_pred             EEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCccc
Confidence            89999987532211111111111224579999998  99999999997532   1222335677777776521  11111


Q ss_pred             EeecCCeEEEEeecCCCCCCCeEEEEE
Q psy11549        166 RNETTSSVHISCTPGYDGGLPQTFTLE  192 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~  192 (261)
                      ....|..+.|.|..    +.+..+++|
T Consensus       214 ~~~~g~~~~l~~~~----~~~~~~~~~  236 (257)
T 1b6u_A          214 SSETGNPRHLHAAA----EQKLISEED  236 (257)
T ss_dssp             ---------------------------
T ss_pred             CccCCCeEEEEEEE----cchHHHHHH
Confidence            12347788888875    344444444

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.74  E-value=3.6e-18  Score=137.87  Aligned_cols=209  Identities=13%  Similarity=0.044  Sum_probs=117.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE------------------Eeecee-ecCceeEEE-eeCCCcEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV------------------KYAPIC-KSDRIVIVG-ASRSESVDI   79 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V------------------~~~p~~-~~~~~~~~~-~~~g~~~~l   79 (261)
                      +.|.|.++..+| |.|+|.|.|..+.. .....+.+                  ..+|.+ ..++.. .. +..|+.++|
T Consensus       184 s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~-~~~~~~G~~~~L  260 (444)
T 1igt_B          184 SSVTVTSSTWPS-QSITCNVAHPASST-KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKI-KDVLMISLSPIV  260 (444)
T ss_dssp             EEEEECSTTTTT-SCCEEEEEETTTTE-EEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCH-HHHHCTTSCCEE
T ss_pred             EEEEEchhhcCC-CeEEEEEEeCCCCc-ceEEEeccCCCCcccCCccccCCcccCCCceEEecCCch-hheeecCCCcEE
Confidence            479999999999 99999999998875 22233322                  113332 112111 11 468999999


Q ss_pred             EEEEeeCC---CCceeEEEEcCCccccccCCceEEeC----CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549         80 HCAVEADP---PARSFKWKFNNSGETLDVGSERFSSG----SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus        80 ~C~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      .|.+.+.+   ++..+.|++++...............    ...+.|.|.++..+|.|.|+|.|.|..+.......+.+ 
T Consensus       261 ~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~-  339 (444)
T 1igt_B          261 TCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISK-  339 (444)
T ss_dssp             EEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEEC-
T ss_pred             EEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEec-
Confidence            99999874   33489999987421111101011111    12447999999999999999999998776533223322 


Q ss_pred             eCCCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE--EEecCCCCc------EEEcCC
Q psy11549        153 LAGKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV--NLTNLDTPA------FTLEDL  218 (261)
Q Consensus       153 ~~~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~--~~~~~~~~~------~~i~~~  218 (261)
                      +.....+|.. .+..     ..+..++|.|.+  .+..|.. .+.|+++........  .........      +.|...
T Consensus       340 ~~~~~~~P~v-~~~~~~~~~~~~~~~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~  416 (444)
T 1igt_B          340 PKGSVRAPQV-YVLPPPEEEMTKKQVTLTCMV--TDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKK  416 (444)
T ss_dssp             CCCCCBCCEE-EEECCCGGGTTSSEEEEEEEE--EEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHH
T ss_pred             cCCCCCCCEE-EEeCCChHHccCCeEEEEEEE--EeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChH
Confidence            1122222321 1111     134459999997  4434443 344445433221111  111122232      233332


Q ss_pred             CCCCccEEEEEEEEEcCCC
Q psy11549        219 GLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       219 ~l~~~~~Y~~~~~a~N~~G  237 (261)
                      ..+++|.|  +|.|.|..-
T Consensus       417 ~~~d~g~Y--tC~a~n~~l  433 (444)
T 1igt_B          417 NWVERNSY--SCSVVHEGL  433 (444)
T ss_dssp             HHHTCCCE--EEEEECTTS
T ss_pred             HhcCCCeE--EEEEECCCc
Confidence            23358999  999999874

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.73  E-value=4.8e-19  Score=142.56  Aligned_cols=210  Identities=10%  Similarity=0.050  Sum_probs=125.3

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFKW   94 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W   94 (261)
                      .+|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..    +|.+...... ..+..|+.++|.|.+.+. |.+..+.|
T Consensus        78 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~G~~v~L~C~~~g~~P~p~~v~W  155 (434)
T 1igy_B           78 ANIHLSSLTSDDSAVYYCVREGEVPYW-GQGTTVTVSSAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTW  155 (434)
T ss_dssp             BCEEECSBCGGGCSEECCCCSSSSCCC-CCCEECEECCSCCBCCCEEEECCC-CCCCCTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEcccccc-CCceEEEEccCCCCCCeEEEcCCc-cccCCCCcEEEEEEEeeecCCCeEEEE
Confidence            389999999999999999998864433 3456777763    3433311111 224689999999999987 54458999


Q ss_pred             EEcCCcccccc-----CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe-----CC--C---CC-
Q psy11549         95 KFNNSGETLDV-----GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL-----AG--K---PQ-  158 (261)
Q Consensus        95 ~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~-----~~--~---p~-  158 (261)
                      ++++.......     ....+..   .+.|.|..+..+| |.|+|.|.|..+.......+.+..     ..  .   |. 
T Consensus       156 ~k~~~~~~~~~~~~~~~~~~~~~---~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v  231 (434)
T 1igy_B          156 NSGSLSSGVHTFPAVLQSDLYTL---SSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSV  231 (434)
T ss_dssp             TTTTBCSSEEECCCEECSSCEEE---EEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCE
T ss_pred             eeCCcCCCeEecCceecCCcEEE---EEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEE
Confidence            98764211100     0011111   2368899999888 999999999887643322222110     00  0   11 


Q ss_pred             ---CCCcceEEeecCCeEEEEeecCCCCCCC---eEEEEEEEeCCcccee--E-E--Ee---cCCCCcEEEcCCCCCCcc
Q psy11549        159 ---PPQNCSVRNETTSSVHISCTPGYDGGLP---QTFTLELYSASDLNLL--V-N--LT---NLDTPAFTLEDLGLDGTV  224 (261)
Q Consensus       159 ---~p~~~~v~~~~~~~~~l~c~~~~~~~~p---~~~~~~~~~~~~~~~~--~-~--~~---~~~~~~~~i~~~~l~~~~  224 (261)
                         +|.... ....|+.+.|.|.+  .+..|   ...+.|++........  . .  ..   ......|.|.+++..|+|
T Consensus       232 ~~~~p~~~~-~v~~G~~~~L~C~~--~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  308 (434)
T 1igy_B          232 FIFPPKPKD-TLLITVTPKVTCVV--VDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGK  308 (434)
T ss_dssp             EEECCCHHH-HHSTTSCCEEEEEE--CCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTC
T ss_pred             EEeCCChHH-hcccCCCcEEEEEE--eccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCC
Confidence               111110 02459999999998  34322   2223344433221100  0 0  00   012346888887778999


Q ss_pred             EEEEEEEEEcCCCcCC
Q psy11549        225 LMRVVISGVNAKGRSL  240 (261)
Q Consensus       225 ~Y~~~~~a~N~~G~~~  240 (261)
                      .|  +|.|.|..|...
T Consensus       309 ~Y--~C~a~n~~~~~~  322 (434)
T 1igy_B          309 EF--KCRVNSAAFPAP  322 (434)
T ss_dssp             CC--BCCBCCSSCSSC
T ss_pred             cE--EEEEECCCCCCc
Confidence            99  999999999653

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.73  E-value=7.9e-17  Score=115.83  Aligned_cols=172  Identities=14%  Similarity=0.150  Sum_probs=110.7

Q ss_pred             EEeeCCCcEEEEEE-EeeCCC-CceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe-
Q psy11549         69 VGASRSESVDIHCA-VEADPP-ARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT-  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~-~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-  145 (261)
                      +.+.+|+.+.|.|. +.+.|. + .+.|++++......... +.........|.|.++..+|+|.|+|.+.+..+.... 
T Consensus        18 ~~v~~G~~v~L~C~~~~~~p~~~-~v~W~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~   95 (201)
T 3s97_C           18 VRVKEGKGMVLLCDPPYHFPDDL-SYRWLLNEFPVFITMDK-RRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVF   95 (201)
T ss_dssp             EEEETTCCEEECCCCCSEESSCC-EEEEEESSTTCBCCCSS-SEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEE
T ss_pred             EEEECCCCEEEeccccccCCCce-EEEEEECCceeeeeeCC-CeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchh
Confidence            77889999999999 778777 6 89999987533222222 2233333457999999999999999999986554332 


Q ss_pred             eEEEEEEe--CCC--CCCCCc----ceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcC
Q psy11549        146 PCLYQVVL--AGK--PQPPQN----CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLED  217 (261)
Q Consensus       146 ~~~~~v~~--~~~--p~~p~~----~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  217 (261)
                      ...+.+.+  ...  +.+|..    ..+....|..+.|.|.+  .+ .|.....|++........... ......+.|.+
T Consensus        96 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~--~g-~p~p~v~W~~~~~~~~~~~~~-~~~~~~L~i~~  171 (201)
T 3s97_C           96 SKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA--LG-NPVPDIRWRKVLEPMPSTAEI-STSGAVLKIFN  171 (201)
T ss_dssp             CCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEE--EE-ESCCEEEEEETTBCCCTTCEE-ETTTTEEEECS
T ss_pred             hcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEc--cC-CCCCceEEEeCCCcCCCceee-cCCCCEEEEcc
Confidence            11222222  111  111110    02333569999999997  33 343334444544322211122 23457899999


Q ss_pred             CCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        218 LGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       218 ~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      +...|.|.|  +|.|.|..|....+..+.+.
T Consensus       172 v~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          172 IQLEDEGIY--ECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             CCGGGCEEE--EEEEEETTEEEEEEEEEEEE
T ss_pred             CChhhCEEE--EEEEEecCCceeeeEEEEEe
Confidence            999999999  99999999988776666553

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.73  E-value=2.8e-17  Score=122.40  Aligned_cols=120  Identities=17%  Similarity=0.192  Sum_probs=86.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcc----eeeeEEEEEEee---ceeecCceeEEEeeCCCcEEEEEEEeeCCCCcee
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEA----TSNQLKLRVKYA---PICKSDRIVIVGASRSESVDIHCAVEADPPARSF   92 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~----~s~~~~l~V~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~   92 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+..    .+..+.|.|..+   |.+.........+.+|+.+.|.|.+.+.|.| .+
T Consensus        90 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p-~v  168 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANA-NV  168 (250)
T ss_dssp             CCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTC-EE
T ss_pred             ceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCC-ee
Confidence            589999999999999999999887643    144678888764   2222222223667789999999999998888 99


Q ss_pred             EEEEcCCccccccC---------------------CceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         93 KWKFNNSGETLDVG---------------------SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        93 ~W~~~~~~~~~~~~---------------------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .|++++........                     ..+.... ....|.|.++..+|+|.|+|.|.|..|
T Consensus       169 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g  237 (250)
T 2fbo_J          169 TWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS-GARNLVIRAAKITDAGRVWCELATGQG  237 (250)
T ss_dssp             EEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE-TTTEEEECSCCGGGCEEEEEEEESSSS
T ss_pred             EEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC-CccEEEEecCCcccCEEEEEEecCCcc
Confidence            99998642211000                     0011110 124799999999999999999999554

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.73  E-value=1.9e-16  Score=118.50  Aligned_cols=119  Identities=18%  Similarity=0.303  Sum_probs=82.4

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCc---ceeeeEEEEEEee--------------ceeecCceeEEEeeCCCcEEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGE---ATSNQLKLRVKYA--------------PICKSDRIVIVGASRSESVDIHCAV   83 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~---~~s~~~~l~V~~~--------------p~~~~~~~~~~~~~~g~~~~l~C~~   83 (261)
                      +|.|.+++.+|+|.|+|.+.|..+.   .....+.|.|..+              +.+...+.. ..+.+|++++|.|.+
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~-~~v~~G~~v~L~C~~  165 (257)
T 3gkz_A           87 YLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAI-MSASPGEKVTLTCSA  165 (257)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSE-EEECTTCCEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCce-EEEeCCCcEEEEEEE
Confidence            7999999999999999999986221   1234567888754              333333333 678899999999999


Q ss_pred             eeCCCCceeEEEEcCCcccccc-----------CCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         84 EADPPARSFKWKFNNSGETLDV-----------GSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        84 ~~~~~~~~~~W~~~~~~~~~~~-----------~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+.+.+..+.|++...+.....           ...++.  .......|.|.++..+|+|.|+|.+.+..
T Consensus       166 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~  235 (257)
T 3gkz_A          166 SSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSF  235 (257)
T ss_dssp             SSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             ccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            9877654799998532221110           011222  22345579999999999999999998753

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.73  E-value=1.6e-16  Score=118.30  Aligned_cols=163  Identities=12%  Similarity=0.121  Sum_probs=102.4

Q ss_pred             EEeeCCCcEEEEEEEee---CCCCceeEEEEcCCccc----c-----------------------ccCCceEEeCC-cee
Q psy11549         69 VGASRSESVDIHCAVEA---DPPARSFKWKFNNSGET----L-----------------------DVGSERFSSGS-RGS  117 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~---~~~~~~~~W~~~~~~~~----~-----------------------~~~~~~~~~~~-~~~  117 (261)
                      +.+.+|+.+.|.|.+.+   .+.+ .+.|++++....    .                       .....+..... ...
T Consensus        12 v~v~~G~~v~L~C~~~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   90 (250)
T 2fbo_J           12 VEVHAGGTVELPCSYQLANDTQPP-VISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAP   90 (250)
T ss_dssp             EEECTTSCEEECCEEEECSCCSCC-EEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSC
T ss_pred             eEEecCCeEEEEEEeEcCCCCCce-EEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcc
Confidence            67889999999999987   5556 899998763210    0                       00111222211 234


Q ss_pred             EEEEecCCCCcCeEEEEEEEcCCceEE---eeEEEEEEeCCCCCCCCc-----ceEEeecCCeEEEEeecCCCCCCCeEE
Q psy11549        118 MLRYTPVTELDYGTLSCAAQNAIGTQV---TPCLYQVVLAGKPQPPQN-----CSVRNETTSSVHISCTPGYDGGLPQTF  189 (261)
Q Consensus       118 ~l~i~~~~~~d~g~y~C~~~~~~~~~~---~~~~~~v~~~~~p~~p~~-----~~v~~~~~~~~~l~c~~~~~~~~p~~~  189 (261)
                      .|.|.++..+|+|.|+|.+.+..+...   ....+.+.+..+|.+|..     ..+....|..+.|.|.+  .+..++.+
T Consensus        91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~--~g~p~p~v  168 (250)
T 2fbo_J           91 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC--TDCANANV  168 (250)
T ss_dssp             CEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCE--ESCTTCEE
T ss_pred             eEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEe--cCCCCCee
Confidence            799999999999999999999766431   122455666555333321     12333469999999997  33333444


Q ss_pred             EEEEEeCCccce----e--------------------EEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        190 TLELYSASDLNL----L--------------------VNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       190 ~~~~~~~~~~~~----~--------------------~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      .| ++.......    .                    ..........|.|.+++.+|.|.|  +|.|.|.+|
T Consensus       169 ~W-~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y--~C~a~N~~g  237 (250)
T 2fbo_J          169 TW-YTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRV--WCELATGQG  237 (250)
T ss_dssp             EE-EEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEE--EEEEESSSS
T ss_pred             EE-EeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEE--EEEecCCcc
Confidence            44 444221110    0                    000111236899999999999999  999999776

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.73  E-value=8.6e-17  Score=120.08  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=84.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe---------------eceeecCceeEEEeeCCCcEEEEEEEee
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY---------------APICKSDRIVIVGASRSESVDIHCAVEA   85 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~---------------~p~~~~~~~~~~~~~~g~~~~l~C~~~~   85 (261)
                      +|.|.+++.+|+|.|+|.+.|..+......+.|.|..               +|.+...+.. ..+.+|++++|.|.+.+
T Consensus        81 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~-~~v~~G~~v~L~C~~~~  159 (253)
T 3uzq_A           81 YLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPAS-LAVSLGQRATISCRASE  159 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSE-EEECTTSCEEEEEEESS
T ss_pred             EEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCe-EEEeCCCCEEEEEEecC
Confidence            4999999999999999999986655434556777774               2333333332 67889999999999998


Q ss_pred             CCCC---ceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         86 DPPA---RSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        86 ~~~~---~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+.+   ..+.|++...+....           ....++.  .......|.|.++..+|+|.|+|.+.|..
T Consensus       160 ~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~  230 (253)
T 3uzq_A          160 NVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEV  230 (253)
T ss_dssp             CCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             ccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            7664   479999853222111           0011222  23345579999999999999999999864

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.73  E-value=1.7e-16  Score=115.81  Aligned_cols=146  Identities=15%  Similarity=0.181  Sum_probs=100.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceE-EeeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQ-VTPC  147 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~  147 (261)
                      +.+..|+.+.|.|.+.+.|.+ .+.|++++..  +..        .....|.|.++..+|+|.|+|.+.+..+.. ....
T Consensus        28 ~~v~~G~~v~L~C~~~~~p~~-~v~W~~~~~~--~~~--------~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~   96 (218)
T 3k0w_A           28 KAVLAGQFVKLCCRATGHPFV-QYQWFKMNKE--IPN--------GNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS   96 (218)
T ss_dssp             EEEETTSBEEEECEETTTTSS-EEEEEETTEE--CTT--------CCSSEEEETTCCGGGCEEEEEEEECTTCCEECCCE
T ss_pred             eEEeCCCcEEEEeeecCCCCC-EEEEEECCEE--CCC--------CCCCEEEEccCChhhCeEeEEEEEcCCCCceeeEE
Confidence            678899999999999888777 8999998742  211        123479999999999999999999987654 2333


Q ss_pred             EEEEEeCC----------C---CC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCC
Q psy11549        148 LYQVVLAG----------K---PQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTP  211 (261)
Q Consensus       148 ~~~v~~~~----------~---p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  211 (261)
                      .+.+....          +   |.   .|..  .....|..+.|.|.+  .+..+..+.| ++.....      ......
T Consensus        97 ~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~v~~G~~v~L~C~~--~g~p~~~v~W-~~~~~~~------~~~~~~  165 (218)
T 3k0w_A           97 QLDVCDIPESFQRSVDGVSESKLQICVEPTS--QKLMPGSTLVLQCVA--VGSPIPHYQW-FKNELPL------THETKK  165 (218)
T ss_dssp             EEEEECCCGGGCTTCCSBCCSSCEEEECCCC--EEECTTCCEEEECEE--EBSSCCEEEE-EETTEEC------TTCCSS
T ss_pred             EEEEEccCcccccccccccCCCceEEECCCc--eeecCCCcEEEEEEe--cccCCCeEEE-EECCEEC------CCCCCC
Confidence            44443221          0   10   1122  233569999999997  3333344444 4432221      122346


Q ss_pred             cEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        212 AFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       212 ~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      .|.|.+++..+.|.|  +|.|.|..|.
T Consensus       166 ~L~i~~v~~~d~G~Y--~C~a~n~~g~  190 (218)
T 3k0w_A          166 LYMVPYVDLEHQGTY--WCHVYNDRDS  190 (218)
T ss_dssp             EEEESSCCGGGCEEE--EEEEECSSCE
T ss_pred             EEEEeecChhcCEEE--EEEEEcCCCC
Confidence            899999999999999  9999999886

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.73  E-value=6.3e-16  Score=111.81  Aligned_cols=174  Identities=11%  Similarity=0.051  Sum_probs=106.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-c---------------CCceEEeCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-V---------------GSERFSSGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-~---------------~~~~~~~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      ..+.+|+++.|.|...+.+.+ .+.|++++...... +               ...++.... ...|.|.++..+|+|.|
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~-~~~L~i~~v~~~D~G~Y   86 (208)
T 3r4d_A            9 PQVAEDNNVLLLVHNLPLALG-AFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-NGSLLFQMITMKDMGVY   86 (208)
T ss_dssp             SEEETTCCEEEEEECCCSSCS-EEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECT-TSCEEECSCCGGGCEEE
T ss_pred             ceeecCCcEEEEEeCCCCCce-EEEeccCCCCCccceEEEEecCCCccccCccccceeEEec-CCeEEEccccccCCeEE
Confidence            346799999999997776666 89999864311100 0               011222221 23699999999999999


Q ss_pred             EEEEEcCCc-eEEeeEEEEEEeCCCCCCCCcceE--EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--eEEEec
Q psy11549        133 SCAAQNAIG-TQVTPCLYQVVLAGKPQPPQNCSV--RNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--LVNLTN  207 (261)
Q Consensus       133 ~C~~~~~~~-~~~~~~~~~v~~~~~p~~p~~~~v--~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~  207 (261)
                      +|.+.+..+ ....  .+.+.+..++..|.....  ....|+.+.|.|.+  .+ .|+.+.|+ +.......  .... .
T Consensus        87 ~C~~~~~~~~~~~~--~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~--~~-~pp~i~W~-~~g~~l~~~~~~~~-~  159 (208)
T 3r4d_A           87 TLDMTDENYRRTQA--TVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLS--ND-IGANIQWL-FNSQSLQLTERMTL-S  159 (208)
T ss_dssp             EEEEECSSCEEEEE--EEEEEEECCCCCCEEEESCSSCCTTCCEEEEEEC--SC-TTCEEEEE-ETTEECCCCSSEEE-E
T ss_pred             EEEEEcccCceeEE--EEEEEeccCCCCCEEecCCceEeeCCCEEEEEEC--CC-CCCceEEE-ECCEeCCCCCCeEE-c
Confidence            999999853 3333  444555455443321000  03469999999997  33 44455444 33222111  1122 2


Q ss_pred             CCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeeccccc
Q psy11549        208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGAHY  254 (261)
Q Consensus       208 ~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~~~  254 (261)
                      .....|.|.+++..|.|.|  +|.|.|.+|... |.++.+....++.
T Consensus       160 ~~~~~L~i~~v~~~d~G~Y--~C~a~N~~g~~~-s~~~~l~v~~~~~  203 (208)
T 3r4d_A          160 QNNSILRIDPIKREDAGEY--QCEISNPVSVRR-SNSIKLDIIFDPH  203 (208)
T ss_dssp             TTTTEEEESSCCGGGCEEE--EEEEECTTCCEE-CCCEEECCC----
T ss_pred             CCCCEEEEeccCHHhCeEE--EEEEecCCCccc-CCceeeeEEeCCc
Confidence            2347899999999999999  999999999754 4555555544443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.72  E-value=1.6e-16  Score=113.73  Aligned_cols=116  Identities=17%  Similarity=0.248  Sum_probs=80.9

Q ss_pred             eEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece---eecCceeEEEeeCCC-cEEEEEEEeeCCCC
Q psy11549         14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI---CKSDRIVIVGASRSE-SVDIHCAVEADPPA   89 (261)
Q Consensus        14 ~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~---~~~~~~~~~~~~~g~-~~~l~C~~~~~~~~   89 (261)
                      .....+++|+|.+++.+|+|.|+|.+.+..+.. ...+.|.|..++.   +....   .....|. .++|.|.+.+.+++
T Consensus        64 ~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~~~~p~i~~~~---~~~~~g~~~v~L~C~~~g~~p~  139 (193)
T 2if7_A           64 LNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAK-LSSYTLRILRQLRNIQVTNHS---QLFQNMTCELHLTCSVEDADDN  139 (193)
T ss_dssp             EEECTTCCEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCEEEEEEECC---C---CSSEEEEEEEEEESCCTT
T ss_pred             EEECCCeEEEECCCCcccCceEEEEEEecCCCe-EEEEEEEEEccCCCCeEecCc---eeecCCCceEEEEEEEecCCCc
Confidence            334457899999999999999999999988765 4578888875432   22111   1123455 89999999996643


Q ss_pred             ceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCC-cCeEEEEEEEcCCceEEe
Q psy11549         90 RSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTEL-DYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        90 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+.|++++.  .+.        .+  ..|.|.....+ |.|.|+|.|.|..|....
T Consensus       140 p~i~W~~~g~--~l~--------~~--~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~  184 (193)
T 2if7_A          140 VSFRWEALGN--TLS--------SQ--PNLTVSWDPRISSEQDYTCIAENAVSNLSF  184 (193)
T ss_dssp             CEEEEEETTE--EEE--------SS--SEEEEEECTTTCSCCEEEEEEEETTEEEEE
T ss_pred             eEEEEEeCCE--EcC--------CC--CeEEEEeccCcCCCCcEEEEEECCCCcccc
Confidence            4899999763  211        11  14666544454 899999999999987754

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.72  E-value=1.3e-17  Score=129.81  Aligned_cols=145  Identities=20%  Similarity=0.330  Sum_probs=103.5

Q ss_pred             CCCCeeccCCCCceEEEEC-CeEEEccCCCCCCEeEEEEEEeCCCc---ceeeeEEEEEEe-----eceeecCceeEEEe
Q psy11549          1 MAGGIPLAHNTSARIILSN-QSLVLQKVSRQSAGTYKCSAINTKGE---ATSNQLKLRVKY-----APICKSDRIVIVGA   71 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~-~~L~i~~~~~~D~G~Y~C~~~~~~~~---~~s~~~~l~V~~-----~p~~~~~~~~~~~~   71 (261)
                      +|||+++..+..+.....+ ++|.|.+++.+|+|.|+|.|.|..|.   ..+..+.|.|..     +|.+..+... ..+
T Consensus       160 ~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~-~~v  238 (339)
T 3o4o_C          160 YKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKT-ISA  238 (339)
T ss_dssp             EESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCC-CCC
T ss_pred             ecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCce-eEe
Confidence            4788888765555555444 48999999999999999999998764   235677888874     4455544333 567


Q ss_pred             eCCCcEEEEEEE---eeCCCCceeEEEEcCCccccc------cCCceEEeCCc-----eeEEEEecCCCCcC-eEEEEEE
Q psy11549         72 SRSESVDIHCAV---EADPPARSFKWKFNNSGETLD------VGSERFSSGSR-----GSMLRYTPVTELDY-GTLSCAA  136 (261)
Q Consensus        72 ~~g~~~~l~C~~---~~~~~~~~~~W~~~~~~~~~~------~~~~~~~~~~~-----~~~l~i~~~~~~d~-g~y~C~~  136 (261)
                      ..|+.+.|.|.+   .+.|.+..+.|++++......      ....++.....     .+.|.|.++..+|. |.|+|.|
T Consensus       239 ~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a  318 (339)
T 3o4o_C          239 SLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVV  318 (339)
T ss_dssp             CCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEE
T ss_pred             ccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEE
Confidence            889999999999   788844489999877432111      01111121111     22699999999997 9999999


Q ss_pred             EcCCceEEee
Q psy11549        137 QNAIGTQVTP  146 (261)
Q Consensus       137 ~~~~~~~~~~  146 (261)
                      .|..|.....
T Consensus       319 ~N~~G~~~~~  328 (339)
T 3o4o_C          319 HNTLSFQTLR  328 (339)
T ss_dssp             EETTEEECCB
T ss_pred             EeccCceEEE
Confidence            9999987763

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.72  E-value=4.6e-17  Score=117.33  Aligned_cols=117  Identities=17%  Similarity=0.237  Sum_probs=79.2

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCC----CcceeeeEEEEEEee---ceeecCceeEEEeeCCCcEEEEEEEeeCCCCc
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTK----GEATSNQLKLRVKYA---PICKSDRIVIVGASRSESVDIHCAVEADPPAR   90 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~----~~~~s~~~~l~V~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~   90 (261)
                      .++.|.|.+++.+|+|.|+|.+.+..    ....+..+.|.|...   |.+...+.  ..+.+|++++|.|.+.+ +.+ 
T Consensus        61 ~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~--~~v~~G~~v~L~C~~~~-~~~-  136 (201)
T 1nkr_A           61 SKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG--PTVLAGENVTLSCSSRS-SYD-  136 (201)
T ss_dssp             EEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC--SEECTTCEEEEEEEESS-CCS-
T ss_pred             ceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCC--CccCCCCeEEEEEeCCC-CCc-
Confidence            35689999999999999999998653    122355678888743   44432222  24679999999999886 344 


Q ss_pred             eeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         91 SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        91 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+.|++++....................|.|.++.  |+|.|+|.|.+..
T Consensus       137 ~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          137 MYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             eEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            89999987532211100011111124579999998  9999999998753

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.72  E-value=1.5e-15  Score=109.33  Aligned_cols=159  Identities=15%  Similarity=0.131  Sum_probs=100.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      +.+.+|+.+.|.|.+.+.|.| .+.|++.... .  .. ...........|.|.++..+|+|.|+|.|.|..+....  .
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p-~i~W~~~~~~-~--~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~--~   83 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESP-FFSWRTQIDS-P--LN-GKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEK--G   83 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSC-EEEEEETTCC-C--CS-SEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEE--E
T ss_pred             EEEcCCCcEEEEEeecCCCCC-eEEEECCCCC-C--cc-ceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEee--E
Confidence            445699999999999998888 7999874321 1  11 12222333457999999999999999999998776555  4


Q ss_pred             EEEEeCCCCCCCCcc-eEEeecCCeEEEEeecCCCCCCCe--EEEEEEEeCCccceeEEEec--------CCCCcEEEcC
Q psy11549        149 YQVVLAGKPQPPQNC-SVRNETTSSVHISCTPGYDGGLPQ--TFTLELYSASDLNLLVNLTN--------LDTPAFTLED  217 (261)
Q Consensus       149 ~~v~~~~~p~~p~~~-~v~~~~~~~~~l~c~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~~  217 (261)
                      +.+.|..+|..+... ......|+.++|.|.+  .++.|.  .-+.|+++....... ....        .....+.|..
T Consensus        84 ~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~--~~~~p~~~~~i~W~k~~~~l~~~-~~~~~~~~~~~~~~~~~l~i~~  160 (202)
T 1vca_A           84 IQVEIYSFPKDPEIHLSGPLEAGKPITVKCSV--ADVYPFDRLEIDLLKGDHLMKSQ-EFLEDADRKSLETKSLEVTFTP  160 (202)
T ss_dssp             EEEEEEBCCSCCEEEESSCEETTSCEEEEEEE--EEEBSGGGEEEEEEETTEEEEEE-ECCSCCSSCCCEEEEEEEEECC
T ss_pred             EEEEEEeCCCCCEeCCceEEcCCCCEEEEEEE--CCcCCCCCeEEEEEeCCeECccc-ccccccCcCcceEEEEEEEEEe
Confidence            555555555433210 0112469999999997  444442  223344443221111 1000        0113345666


Q ss_pred             CCCCCccEEEEEEEEEcCCCcC
Q psy11549        218 LGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       218 ~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      ...++++.|  +|.|.|.+|..
T Consensus       161 ~~~d~~g~y--tC~A~n~~~~~  180 (202)
T 1vca_A          161 VIEDIGKVL--VCRAKLHIDEM  180 (202)
T ss_dssp             CGGGTTCEE--EEEEEECSCCC
T ss_pred             eeccCCCeE--EEEEEccccCC
Confidence            666788899  99999999874

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.72  E-value=8.4e-17  Score=124.76  Aligned_cols=130  Identities=20%  Similarity=0.294  Sum_probs=97.5

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNS   99 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~   99 (261)
                      ..|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|.++|.+.........+..|+.+.|.|.+.+.|.+..+.|++++.
T Consensus       194 ~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~  272 (331)
T 3u83_A          194 SRYRLVPSREAHQQSLACIVNYHMDRF-KESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNG  272 (331)
T ss_dssp             EEEEECCCGGGTTCEEEEEEEETTEEE-EEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTB
T ss_pred             EEEEEEeccccCCCEEEEEEecCCCcc-eeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCC
Confidence            368888889999999999999998775 6788999998887653332224577899999999999999884499999874


Q ss_pred             ccccccCCceEEeCCceeEEEEe-cCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCC
Q psy11549        100 GETLDVGSERFSSGSRGSMLRYT-PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP  159 (261)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~  159 (261)
                      ...    .. .....  ..|.|. ++..+|+|.|+|.|.|..|....  .+.+.|...+..
T Consensus       273 ~~~----~~-~~~~~--~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~--~~~l~V~~~~~~  324 (331)
T 3u83_A          273 SLP----KG-VEAQN--RTLFFKGPINYSLAGTYICEATNPIGTRSG--QVEVNITEAAAL  324 (331)
T ss_dssp             SCC----TT-EEEET--TEEEECSCCCGGGCEEEEEEEEETTEEEEE--EEEECCBC----
T ss_pred             ccc----cc-ceecC--cEEEEeCCCccccCeEEEEEEEeccccceE--EEEEEEeccchh
Confidence            321    11 11222  369999 89999999999999999998766  555666555543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.72  E-value=6.1e-17  Score=120.50  Aligned_cols=131  Identities=16%  Similarity=0.184  Sum_probs=84.0

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEee-CCCCceeEEEEcC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEA-DPPARSFKWKFNN   98 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~~~   98 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|..+|.+.....  .....|+.+.|.|.+.+ .|.+..+.|++++
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~P~v~~~~~--~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g  158 (248)
T 3pv7_A           82 ASLRLPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEVVASPASRLLLD--QVGMKENEDKYMCESSGFYPEAINITWEKQT  158 (248)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEECC----------CEEEEEEEEEBSSCCEEEEEEEC
T ss_pred             EEEEeCCCCHHHCeEEEEEEEeCCccc-eeEEEEEEecCCceEEecC--CccccCCCcEEEEEEccEECCCeEEEEEECC
Confidence            359999999999999999999987765 5678899988877654332  22446788889999998 5655589999987


Q ss_pred             Cccccc--cCC----ceEEeCC-----ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549         99 SGETLD--VGS----ERFSSGS-----RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus        99 ~~~~~~--~~~----~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      ......  ...    .......     ..+.|.+.....+|.|.|+|.|.|..+.......+.+.|
T Consensus       159 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          159 QKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             SSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             ccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            421100  000    0111111     124678888888999999999999887644444555555

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.71  E-value=5.9e-16  Score=111.43  Aligned_cols=122  Identities=17%  Similarity=0.201  Sum_probs=82.4

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcce----eeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEe-eCCCCceeE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEAT----SNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVE-ADPPARSFK   93 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~----s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~~~~   93 (261)
                      +.+|.|.+++.+|+|.|+|.+.|..|...    ...+.|.|..++.  .+.........|+.+.|.|.+. +.|.| .+.
T Consensus        64 ~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~--~p~~~~~~~~~g~~~~l~C~~~~g~P~p-~i~  140 (201)
T 1dr9_A           64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFP--TPSISDFEIPTSNIRRIICSTSGGFPEP-HLS  140 (201)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCC--CCEEEEEECSSTTEEEEEEEEEEESSCE-EEE
T ss_pred             CcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCC--CCceEeccCCCCCeEEEEEecCCccCCC-EEE
Confidence            46999999999999999999999876542    3456666665421  1222222335688999999995 77777 899


Q ss_pred             EEEcCCccccccCCceEEeCC--ce-eEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         94 WKFNNSGETLDVGSERFSSGS--RG-SMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        94 W~~~~~~~~~~~~~~~~~~~~--~~-~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      |++++.  .+......+....  .. ....+..+..+|.|.|+|.|.|..+....
T Consensus       141 W~k~g~--~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~  193 (201)
T 1dr9_A          141 WLENGE--ELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQ  193 (201)
T ss_dssp             EEESSC--EECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEE
T ss_pred             EEECCE--ECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeee
Confidence            999864  3332223333322  21 11123445568999999999999887666

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.71  E-value=6.6e-16  Score=111.22  Aligned_cols=170  Identities=12%  Similarity=-0.015  Sum_probs=100.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc---eEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG---TQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~---~~~~  145 (261)
                      ..+.+|++++|.|.+.. +.+ .+.|++++....................|.|.++..+|+|.|+|.+.+...   ....
T Consensus        17 ~~v~~G~~v~L~C~~~~-~~~-~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~   94 (201)
T 1nkr_A           17 PLVKSEETVILQCWSDV-MFE-HFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAP   94 (201)
T ss_dssp             SEEETTCCEEEEEEESS-CCS-EEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCC
T ss_pred             CccCCCCcEEEEEeccC-CCC-EEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEecCCCCccccCC
Confidence            34679999999999874 444 899999875321100001111122345799999999999999999986421   1111


Q ss_pred             eEEEEEEeCCCCCCCCcc---eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--EEecC--CCCcEEEcCC
Q psy11549        146 PCLYQVVLAGKPQPPQNC---SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--NLTNL--DTPAFTLEDL  218 (261)
Q Consensus       146 ~~~~~v~~~~~p~~p~~~---~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~i~~~  218 (261)
                      +..+.+.+...+.+|...   ......|+.++|.|.+  . +.+..|. |+++........  .....  ....|.|.++
T Consensus        95 s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~--~-~~~~~~~-w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v  170 (201)
T 1nkr_A           95 SDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSS--R-SSYDMYH-LSREGEAHERRLPAGPKVNGTFQADFPLGPA  170 (201)
T ss_dssp             CCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEE--S-SCCSEEE-EEETTCSSCEEEECEEEETTEEEEEEEEEEC
T ss_pred             CCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeC--C-CCCceEE-EEECCcccCcccccccccCCceEEEEEeCCc
Confidence            223334443333223211   0123569999999997  2 2344554 445543332111  11111  1467899996


Q ss_pred             CCCCccEEEEEEEEEcCC---CcCCceeeeeee
Q psy11549        219 GLDGTVLMRVVISGVNAK---GRSLPVIWDDFS  248 (261)
Q Consensus       219 ~l~~~~~Y~~~~~a~N~~---G~~~~s~~~~~~  248 (261)
                      +  |+|.|  +|.|.|..   .++.+|.++++.
T Consensus       171 ~--d~G~Y--~C~a~~~~~~~~~s~~S~~~~l~  199 (201)
T 1nkr_A          171 T--HGGTY--RCFGSFHDSPYEWSKSSDPLLVS  199 (201)
T ss_dssp             C--SCEEE--EEEEEETTEEEEECCCCCCEEEE
T ss_pred             C--CCeeE--EEEEEcCCCCCcCCCCCCCEEEE
Confidence            6  99999  88888653   567777777664

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.71  E-value=4.3e-16  Score=116.47  Aligned_cols=120  Identities=15%  Similarity=0.247  Sum_probs=86.3

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCc----ceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCC----ce
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGE----ATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPA----RS   91 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~----~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~----~~   91 (261)
                      .+|.|.+++.+|+|.|+|.+.|..|.    .....+.|.|..+|.+...+.. +.+..|++++|.|.+.+.+++    ..
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~~~  157 (256)
T 1nqb_A           79 AYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLS-LPVSLGDQASISCRSSQSIVHSNGNTY  157 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSE-EEECTTCCEEEEEEESSCCBCTTSCBC
T ss_pred             EEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcE-EEEecCCcEEEEeEecCcccccccceE
Confidence            38999999999999999999988652    1233467888766655443333 668899999999999988765    47


Q ss_pred             eEEEEc--CCccccc---------cCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         92 FKWKFN--NSGETLD---------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        92 ~~W~~~--~~~~~~~---------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +.|++.  +......         ....++.  .......|.|.++..+|+|.|+|.+.+..
T Consensus       158 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  219 (256)
T 1nqb_A          158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHV  219 (256)
T ss_dssp             EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCC
Confidence            999993  3221100         0012232  23345579999999999999999999854

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.71  E-value=2.6e-16  Score=117.66  Aligned_cols=119  Identities=17%  Similarity=0.230  Sum_probs=83.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC---cceeeeEEEEEEe----------------eceeecCceeEEEeeCCCcEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG---EATSNQLKLRVKY----------------APICKSDRIVIVGASRSESVDIHC   81 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~---~~~s~~~~l~V~~----------------~p~~~~~~~~~~~~~~g~~~~l~C   81 (261)
                      +|.|.+++.+|+|.|+|.+.+..+   ......+.|.|..                +|.+...+.. ..+.+|++++|.|
T Consensus        82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~v~~G~~v~L~C  160 (256)
T 3umt_A           82 YLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSS-LSASLGERVSITC  160 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSE-EEECTTCCEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCe-EEEECCCCEEEEE
Confidence            499999999999999999988721   1123456788874                3333333333 6788999999999


Q ss_pred             EEeeCCCCceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         82 AVEADPPARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        82 ~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .+.+.+.+ .+.|++...+....           ....++.  .......|.|.++..+|+|.|+|.+.+...
T Consensus       161 ~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~  232 (256)
T 3umt_A          161 RASQDIGS-NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSP  232 (256)
T ss_dssp             EESSCCTT-CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSS
T ss_pred             EEecCCCc-EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCC
Confidence            99998877 89999853221111           0012222  233455799999999999999999998543

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.71  E-value=2.3e-16  Score=110.45  Aligned_cols=144  Identities=11%  Similarity=0.138  Sum_probs=96.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.+++..+.|++++..  +...         ...+.+.++..+|+|.|+|.+.+.....  .  
T Consensus        14 ~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~--~~~~---------~~~~~~~~~~~~d~G~Y~C~~~~~~~s~--~--   78 (170)
T 3ry4_A           14 INVLQEDSVTLTCQGARSPESDSIQWFHNGNL--IPTH---------TQPSYRFKANNNDSGEYTCQTGQTSLSD--P--   78 (170)
T ss_dssp             SEEETTCEEEEEEESCCCSSSSCEEEEETTEE--CTTC---------CSSEEEEECCGGGCEEEEEEETTSBCCC--C--
T ss_pred             eEEECCCcEEEEEEecCCCCcceEEEEECCeE--cccC---------ccceEEEecccccCeEEEEEEeCCCceE--e--
Confidence            34679999999999999875448999997742  2111         2246778999999999999999754332  2  


Q ss_pred             EEEEeCCCCC--CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        149 YQVVLAGKPQ--PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       149 ~~v~~~~~p~--~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      +.+.+..+|.  .+....+  ..|+.+.|.|.+  ..+.|..-..|+++....    . .......|.|.+++.+|.|.|
T Consensus        79 ~~l~v~~~~~~~~~~~~~~--~~g~~~~l~C~~--~~~~p~~~~~W~~~g~~~----~-~~~~~~~L~i~~v~~~d~G~Y  149 (170)
T 3ry4_A           79 VHLTVLFEWLVLQTPHLEF--QEGETIMLRCHS--WKDKPLVKVTFFQNGKSQ----K-FSHLDPTFSIPQANHSHSGDY  149 (170)
T ss_dssp             EEEEEECCSEEEECSCSEE--CTTCCEEEEEEE--GGGCCEEEEEEEETTEEE----E-EESSCCEEEESSCCGGGCEEE
T ss_pred             EEEEEECCceEecCCCcee--ecCCeEEEEEEC--CCCCCCceEEEEECCeEc----c-ccCCCCeEEEEeccccCCEEE
Confidence            3333333331  1122233  459999999997  455564434444432221    1 123457899999999999999


Q ss_pred             EEEEEEEcCCCc
Q psy11549        227 RVVISGVNAKGR  238 (261)
Q Consensus       227 ~~~~~a~N~~G~  238 (261)
                        +|.|.|..|.
T Consensus       150 --~C~a~n~~g~  159 (170)
T 3ry4_A          150 --HCTGNIGYTL  159 (170)
T ss_dssp             --EEEEEETTEE
T ss_pred             --EEEEEeCcCc
Confidence              9999999984

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.71  E-value=3.3e-17  Score=119.09  Aligned_cols=125  Identities=17%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC--cceeeeEEEEEE----eeceeecCceeEEEeeCCCcEEEEEEEeeCCC-Ccee
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG--EATSNQLKLRVK----YAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSF   92 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~--~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~   92 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+  ......+.|.|.    .+|.+...... ..+..|+.++|.|.+.+.++ +..+
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v  148 (213)
T 3mj8_L           70 ATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPS-SEELKTNQATLVCMINGFYPADVAV  148 (213)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCC-cccccCCcEEEEEEeeceeCCCeEE
Confidence            4799999999999999999999987  233556788887    45554432211 22337999999999998644 3489


Q ss_pred             EEEEcCCccccccCC-ceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         93 KWKFNNSGETLDVGS-ERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        93 ~W~~~~~~~~~~~~~-~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .|++++......... ......+   ..+.|.|..+..+|.|.|+|.|.|..+....
T Consensus       149 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  205 (213)
T 3mj8_L          149 TWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEK  205 (213)
T ss_dssp             EEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEE
T ss_pred             EEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEe
Confidence            999987422110000 0001111   1235889999999999999999998765544

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.71  E-value=1.4e-17  Score=120.29  Aligned_cols=136  Identities=13%  Similarity=0.188  Sum_probs=85.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe-----------------------
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY-----------------------   57 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~-----------------------   57 (261)
                      ||||.+|...     ...+++|.|.+++.+|+|.|+|.+.+..    +..+.|.|..                       
T Consensus        35 ~k~g~~l~~~-----~~~~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~  105 (204)
T 1sy6_A           35 FKDGKMIGFL-----TEDKKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKK  105 (204)
T ss_dssp             EETTEEEEEE-----ESSCCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEEEC-----------------------
T ss_pred             EECCEECCCC-----CCCCCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEEEEecccccccccccccccccccccc
Confidence            4788887422     1135689999999999999999975432    2334555540                       


Q ss_pred             --------eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecC-CCCc
Q psy11549         58 --------APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPV-TELD  128 (261)
Q Consensus        58 --------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d  128 (261)
                              ++.+...+.  ....+|++++|.|.  +.|.| .+.|++++...........+...  ...|.|.++ ..+|
T Consensus       106 ~~~~~~~~~~~~~~~p~--~v~~~G~~v~L~C~--g~p~p-~i~W~k~~~~l~~~~~~~~~~~~--~~~L~I~~v~~~~D  178 (204)
T 1sy6_A          106 DGSDGNEEMGGITQTPY--KVSISGTTVILTCP--QYPGS-EILWQHNDKNIGGDEDDKNIGSD--EDHLSLKEFSELEQ  178 (204)
T ss_dssp             -------------CCCC--EEEEETTEEEEECS--CCCSS-CEEEEETTEEESCCTTCTTEEEE--TTEEEETTCCHHHH
T ss_pred             ccccccccccceecCCc--eeeecCCcEEEEcC--CCCCC-ceEEEECCEECCCccCCceEecC--CCEEEEeeCCcccc
Confidence                    111111111  12238999999999  66767 79999987432111111222212  347999999 9999


Q ss_pred             CeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549        129 YGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus       129 ~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      +|.|+|.|.|..|.. .+..+.+.+
T Consensus       179 ~G~Y~C~A~N~~g~~-~s~~l~l~~  202 (204)
T 1sy6_A          179 SGYYVCYPRGSKPED-ANFYLYLRA  202 (204)
T ss_dssp             CEEEEEEETTSCGGG-SSCEEEEEE
T ss_pred             CEEEEEEeccCCCCc-eeEEEEEEE
Confidence            999999999998853 222444443

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.70  E-value=9.6e-18  Score=135.85  Aligned_cols=206  Identities=15%  Similarity=0.112  Sum_probs=107.4

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe-----------------ecee-ecCceeEEEeeCCCcEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY-----------------APIC-KSDRIVIVGASRSESVDIHCA   82 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~-----------------~p~~-~~~~~~~~~~~~g~~~~l~C~   82 (261)
                      .|.|.+++.+| |.|+|.|.|..+.. .....|.+..                 +|.+ ..++.....+..|+.+.|.|.
T Consensus       195 ~L~i~~~~~~d-G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~  272 (457)
T 1hzh_H          195 VVTVPSSSLGT-QTYICNVNHKPSNT-KVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCV  272 (457)
T ss_dssp             EEEECSGGGGT-SCCEEEEEEGGGTE-EEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEE
T ss_pred             EEEecccccCC-ceEEEEEEeCCCCc-ceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEE
Confidence            79999999999 99999999976654 2233333221                 2322 111111011457999999999


Q ss_pred             EeeCCCC---ceeEEEEcCCccccccCCc--eEEeCCceeEEEEe---cCCCCc---CeEEEEEEEcCCceEEeeEEEEE
Q psy11549         83 VEADPPA---RSFKWKFNNSGETLDVGSE--RFSSGSRGSMLRYT---PVTELD---YGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        83 ~~~~~~~---~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~l~i~---~~~~~d---~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      +.+.+++   ..+.|++++..  +.....  .......  .+.+.   .+...|   .|.|+|.|.|..+.......+.+
T Consensus       273 ~~g~~p~p~~~~i~W~k~~~~--~~~~~~~~~~~~~~g--~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~  348 (457)
T 1hzh_H          273 VVDVSHEDPEVKFNWYVDGVE--VHNAKTKPREEQYNS--TYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISK  348 (457)
T ss_dssp             EECCCTTCCCCEEEEEETTEE--ECCCEEEEEEECTTS--CEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECC
T ss_pred             EEcccCCCCceEEEEEeCCcc--ccccccccceecCCC--cEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEc
Confidence            9987653   38999998742  111111  1111111  22222   234555   99999999986544322222222


Q ss_pred             --EeCCCCC----CCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE--EEecCCCCcE------EEc
Q psy11549        152 --VLAGKPQ----PPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV--NLTNLDTPAF------TLE  216 (261)
Q Consensus       152 --~~~~~p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~--~~~~~~~~~~------~i~  216 (261)
                        .+..+|.    ++....   ..+..+.|.|.+  .+..|.. .+.|+++........  .........+      .|.
T Consensus       349 ~~~~~~~P~v~~~~~~~~~---~~~~~~~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~  423 (457)
T 1hzh_H          349 AKGQPREPQVYTLPPSRDE---LTKNQVSLTCLV--KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVD  423 (457)
T ss_dssp             CCCCCBCCEEEEECCCGGG---GGSSEEEEEEEE--EEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEE
T ss_pred             ccCCCCCCeEEEECCCccc---cCCCcEEEEEEE--EeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEC
Confidence              1122221    111111   124459999997  4434432 334444432221111  1111222222      333


Q ss_pred             CCCCCCccEEEEEEEEEcCCCcC
Q psy11549        217 DLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       217 ~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      ....+++|.|  +|.|.|.....
T Consensus       424 ~~~~~~~g~Y--tC~a~n~~l~~  444 (457)
T 1hzh_H          424 KSRWQQGNVF--SCSVMHEALHN  444 (457)
T ss_dssp             HHHHHTTCCE--EEEEECTTSGG
T ss_pred             hHHccCCCeE--EEEEEECCCCC
Confidence            3222468999  99999987543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.70  E-value=1.2e-16  Score=113.45  Aligned_cols=159  Identities=13%  Similarity=0.120  Sum_probs=106.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-----------CCceEEe-----CCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSERFSS-----GSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----------~~~~~~~-----~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+..|+++.|.|.+.+.+.+ .+.|++++.......           ...++..     ......|.|.++..+|+|.|
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            5 VLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCce-EEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            667899999999999877776 899999874212110           0112222     22245699999999999999


Q ss_pred             EEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCc
Q psy11549        133 SCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPA  212 (261)
Q Consensus       133 ~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (261)
                      +|.+.+..+..    .+.|.  ..+. +....+  ..|+.++|.|.+  .++.++.+.| ++.....       ......
T Consensus        84 ~C~~~~~~~~~----~l~V~--~~~~-~~~~~v--~~g~~~~l~C~~--~~~p~~~v~W-~~~~~~~-------~~~~~~  144 (184)
T 2ny1_B           84 ICEVEDQKEEV----QLLVF--GLTA-NSDTHL--LQGQSLTLTLES--PPGSSPSVQC-RSPRGKN-------IQGGKT  144 (184)
T ss_dssp             EEEETTEEEEE----EEEEE--EEEE-SSCSEE--ETTCCEEEEEEC--CTTCCCEEEE-ECTTSCE-------EEESSE
T ss_pred             EEEEEcCCCcE----EEEEE--EecC-CCCcee--ecCCCEEEEEEc--CCCCCCEEEE-EeCCCcc-------ccCceE
Confidence            99999865422    23332  2222 222334  459999999997  3433344444 4332221       113478


Q ss_pred             EEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        213 FTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       213 ~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      |.|.+++.+|.|.|  +|.|.|..|....+..+.+..
T Consensus       145 L~i~~v~~~d~G~Y--~C~a~n~~~~~~~~~~l~V~~  179 (184)
T 2ny1_B          145 LSVSQLELQDSGTW--TCTVLQNQKKVEFKIDIVVLA  179 (184)
T ss_dssp             EEESSCCGGGCEEE--EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEecCCcCCCeEE--EEEEEECCceEEEEEEEEEEe
Confidence            99999999999999  999999998777777666653

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.70  E-value=5.2e-16  Score=113.33  Aligned_cols=175  Identities=13%  Similarity=0.139  Sum_probs=104.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCc--eeEEEEcCCcccccc-------------CCceE---------EeCCceeEEEEecC
Q psy11549         69 VGASRSESVDIHCAVEADPPAR--SFKWKFNNSGETLDV-------------GSERF---------SSGSRGSMLRYTPV  124 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~-------------~~~~~---------~~~~~~~~l~i~~~  124 (261)
                      +.+..|++++|.|.+.+.+.+.  .+.|++++.......             ...+.         ........|.|.++
T Consensus        11 V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   90 (225)
T 4fmk_A           11 VRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRGL   90 (225)
T ss_dssp             EEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECSC
T ss_pred             EEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEccC
Confidence            5677999999999998877652  489998764221100             00001         01123457999999


Q ss_pred             CCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCC-cceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE
Q psy11549        125 TELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ-NCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV  203 (261)
Q Consensus       125 ~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~-~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~  203 (261)
                      ..+|+|.|+|.+.+..+..... ...+.+..+|..+. ........+..+.+.|..  .++.|....+|++.........
T Consensus        91 ~~~D~G~Y~C~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~--~~~~P~~~~~w~~~~~~~~~~~  167 (225)
T 4fmk_A           91 RVEDEGNYTCEFATFPNGTRRG-VTWLRVIAQPENHAEAQEVTIGPQSVAVARCVS--TGGRPPARITWISSLGGEAKDT  167 (225)
T ss_dssp             CGGGCEEEEEEEEEETTEEEEE-EEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEE--EEEBSCCEEEEECSSCCEEEEE
T ss_pred             CHHHCcceEEEEEeCCCcceee-eeeeeeecCCceeecccceeecceeeeeeeeee--cCCCCCCEEEEEECCccccCCc
Confidence            9999999999999876655443 22233323332111 001112346667777765  3455555455554433322111


Q ss_pred             -EEecCCC-----CcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        204 -NLTNLDT-----PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       204 -~~~~~~~-----~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                       .......     +.|.|..++..++|.|  +|.|.|++|..+.+..+.+.
T Consensus       168 ~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y--tC~a~N~~~~~~~~~~v~l~  216 (225)
T 4fmk_A          168 QEPGIQAGTVTIISRYSLVPVGRADGVKV--TCRVEHESFEEPILLPVTLS  216 (225)
T ss_dssp             EEECSSTTCEEEEEEEEECCCGGGTTCEE--EEEEECTTCSSCEEEEEECC
T ss_pred             ceEEecCCCEEEEEEEEEeeCCHHHCCEE--EEEEEcCCCCeEEEEEEEEE
Confidence             1111111     2588988888999999  99999999988766655544

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.70  E-value=5.4e-16  Score=115.30  Aligned_cols=118  Identities=12%  Similarity=0.171  Sum_probs=82.7

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEEeec---------------eeecCceeEEEeeCCCcEEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKYAP---------------ICKSDRIVIVGASRSESVDIHCAVE   84 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~~~p---------------~~~~~~~~~~~~~~g~~~~l~C~~~   84 (261)
                      +|.|.+++.+|+|.|+|.+.|..+.. ....+.|.|...|               .+...+.. +.+.+|++++|.|.+.
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G~~v~L~C~~~  160 (247)
T 2ghw_B           82 YLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPAT-LSLSPGERATLSCRAS  160 (247)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSE-EEECTTSCEEEEEEES
T ss_pred             EEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCE-EEecCCCcEEEEEEeC
Confidence            79999999999999999999873221 1334577877542               12222222 5688999999999999


Q ss_pred             eCCCCceeEEEE--cCCccccc---------cCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         85 ADPPARSFKWKF--NNSGETLD---------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        85 ~~~~~~~~~W~~--~~~~~~~~---------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +.+++ .+.|++  ++......         ....++.  .......|.|.++..+|+|.|+|.|.+..
T Consensus       161 ~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~  228 (247)
T 2ghw_B          161 QSVRS-NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNW  228 (247)
T ss_dssp             SCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSS
T ss_pred             CCccc-eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCC
Confidence            98887 899998  33221100         0112232  23345579999999999999999999854

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.70  E-value=8.1e-16  Score=111.79  Aligned_cols=171  Identities=15%  Similarity=0.139  Sum_probs=102.8

Q ss_pred             EEEeeCC--CcEEEEEEEeeCCCCceeEEEEc-CCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         68 IVGASRS--ESVDIHCAVEADPPARSFKWKFN-NSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        68 ~~~~~~g--~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      .+.+.+|  +.+.|.|.+.+ |.+ .+.|++. .++..+.. ...+.... ...|.|.++..+|+|.|+|.|.+..+...
T Consensus        16 ~v~v~eG~~~~v~L~C~~~~-p~~-~v~w~~~~~~g~~~~~-~~~~~~~~-~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~   91 (213)
T 2x1w_L           16 VVYITENKNKTVVIPCLGSI-SNL-NVSLCARYPEKRFVPD-GNRISWDS-KKGFTIPSYMISYAGMVFCEAKINDESYQ   91 (213)
T ss_dssp             EEEECCSTTCEEEECCCBSS-TTC-CEEEEEETTTEEECCC-SSSCEEET-TTEEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred             EEEEecCCCccEEEeeccCC-CCc-EEEEEhhcCCCccccC-CCcccccC-CccEEEccCChhcCceEEEEEEECCeeEE
Confidence            3778899  99999999976 555 7999875 11222221 22222222 22599999999999999999998544332


Q ss_pred             eeEEEEEEeCC--CCC----CCCcceEEeecCCeEEEEeecCCCCCC--CeEEEEEEEeCCccce--e-E-EEe------
Q psy11549        145 TPCLYQVVLAG--KPQ----PPQNCSVRNETTSSVHISCTPGYDGGL--PQTFTLELYSASDLNL--L-V-NLT------  206 (261)
Q Consensus       145 ~~~~~~v~~~~--~p~----~p~~~~v~~~~~~~~~l~c~~~~~~~~--p~~~~~~~~~~~~~~~--~-~-~~~------  206 (261)
                      . ..+.+.+..  +|.    ++..  +....|+.++|.|.+  .+..  +..+.| ++.......  . . ...      
T Consensus        92 s-~~~~l~v~~~~~p~~~~~~~~~--~~v~~G~~v~L~C~~--~g~p~~~~~i~W-~~~g~~~~~~~~~~~~~~~~~~~~  165 (213)
T 2x1w_L           92 S-IMYIVVVVGYRIYDVVLSPSHG--IELSVGEKLVLNCTA--RTELNVGIDFNW-EYPSSKHQHKKLVNRDLKTQSGSE  165 (213)
T ss_dssp             C-CCEEEEECBCCEEEEEEESCSC--EEEETTCCEEEEEEE--EECTTBCCEEEE-ECSCSSCCSEEEEEEEECCCSSCS
T ss_pred             E-EEEEEEEeCCcccceEEcCCCC--eEEcCCCCEEEEEEE--ECCCCCceEEEE-EecCCccceEEEeccccccccCcc
Confidence            2 224444432  111    2222  233569999999997  3222  223444 333322111  1 0 000      


Q ss_pred             -cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        207 -NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       207 -~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                       ......|.|.+++.+|+|.|  +|.|.|..|....+..+.+..+
T Consensus       166 ~~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~g~~~~~~~l~V~~~  208 (213)
T 2x1w_L          166 MKKFLSTLTIDGVTRSDQGLY--TCAASSGLMTKKNSTFVRVHED  208 (213)
T ss_dssp             CEEEEEEEEESSCCGGGCEEE--EEEEECSSCEEEEEEEEEEEC-
T ss_pred             ceeeeEEEEECCCCcccCEEE--EEEEecCCCcEEEEEEEEEecc
Confidence             01123599999999999999  9999999998877777777543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.69  E-value=9.2e-16  Score=115.39  Aligned_cols=125  Identities=18%  Similarity=0.331  Sum_probs=86.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEE---eeCCCCceeEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAV---EADPPARSFKWK   95 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~~~~W~   95 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+.. .+..+.|.|.  |.   .+. ...+..|+.+.|.|.+   .+.|.+ .+.|+
T Consensus        84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~---~p~-~~~v~~G~~v~L~C~~~~~~~~p~~-~v~W~  156 (268)
T 3mj6_A           84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PE---EPR-DLRVRVGDTTQMRCSIQSTEEKRVT-KVNWM  156 (268)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CC---CCS-EEEEETTCCEEECCBCEESSSSCCC-EEEEE
T ss_pred             EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--cc---CCC-ccccccCCcEEEEEEecCCCCCCcc-ceEEE
Confidence            689999999999999999999876544 3444555553  21   112 3678899999999999   444666 89999


Q ss_pred             EcCCccccc---------------cCCc----eEEe----CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         96 FNNSGETLD---------------VGSE----RFSS----GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        96 ~~~~~~~~~---------------~~~~----~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      +++......               ....    ++..    ......|.|.++..+|+|.|+|.|.|..+.......+.|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V  235 (268)
T 3mj6_A          157 FSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV  235 (268)
T ss_dssp             EECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEE
Confidence            853211000               0000    1111    123457999999999999999999998887666544444

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.69  E-value=2.1e-16  Score=115.44  Aligned_cols=135  Identities=14%  Similarity=0.167  Sum_probs=91.5

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEc
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN   97 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~   97 (261)
                      .+.+|.|.+++.+|+|.|+|.+.+..+........+.+..+|........ .....++.+.+.|.+.+.+++..+.|+++
T Consensus        81 ~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~c~~~~~~P~~~~~w~~~  159 (225)
T 4fmk_A           81 RDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQE-VTIGPQSVAVARCVSTGGRPPARITWISS  159 (225)
T ss_dssp             CBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECC-BCCSSSCEEEEEEEEEEEBSCCEEEEECS
T ss_pred             CcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccc-eeecceeeeeeeeeecCCCCCCEEEEEEC
Confidence            34689999999999999999999988776555566666655554433222 33456777777777665544448999887


Q ss_pred             CCccccccCCceEEeCCc----eeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCC
Q psy11549         98 NSGETLDVGSERFSSGSR----GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAG  155 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~  155 (261)
                      +..... . .........    .+.|.|.++..+|+|.|+|.|.|..+.......++|.|.+
T Consensus       160 ~~~~~~-~-~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          160 LGGEAK-D-TQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             SCCEEE-E-EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             CccccC-C-cceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            642211 1 111111111    3469999999999999999999988776655566666654

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.69  E-value=6.5e-17  Score=117.52  Aligned_cols=119  Identities=21%  Similarity=0.252  Sum_probs=82.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe---eceeecCceeEEEeeCCCcEEEEEEEee-CCCCceeEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY---APICKSDRIVIVGASRSESVDIHCAVEA-DPPARSFKWKF   96 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~~W~~   96 (261)
                      +|.|.+++.+|+|.|+|.+.|..+......+.|.|..   +|.+...... .....|+.+.|.|.+.+ .|++..+.|++
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k  150 (213)
T 3d9a_L           72 TLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKI  150 (213)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCC-hhhcCCCcEEEEEEEeeecCCceEEEEEc
Confidence            8999999999999999999988776444456777764   4544322111 11236889999999987 44444899999


Q ss_pred             cCCccccccC-Cc--eEEeCC-----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         97 NNSGETLDVG-SE--RFSSGS-----RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        97 ~~~~~~~~~~-~~--~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ++..  +... ..  ......     ..+.|.|.++..+|.|.|+|.|.|....
T Consensus       151 ~g~~--~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          151 DGSE--RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  202 (213)
T ss_dssp             TTEE--ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCCc--CcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence            8742  2111 00  011111     1347999999999999999999997654

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.69  E-value=1.2e-16  Score=115.91  Aligned_cols=119  Identities=16%  Similarity=0.178  Sum_probs=81.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe---eceeecCceeEEEeeCCCcEEEEEEEeeCC-CCceeEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY---APICKSDRIVIVGASRSESVDIHCAVEADP-PARSFKWKF   96 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~~   96 (261)
                      +|.|.+++.+|+|.|+|.+.|..+........|.|..   +|.+...... .....|+.++|.|.+.+.+ ++..+.|++
T Consensus        71 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k  149 (210)
T 1lk3_L           71 TLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPS-TEQLATGGASVVCLMNNFYPRDISVKWKI  149 (210)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCc-hhhccCCcEEEEEEEEeEeCCceEEEEEe
Confidence            8999999999999999999988765434445777764   3444321111 1133799999999999754 444899999


Q ss_pred             cCCccccccC-Cc--eEEe-CCc----eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         97 NNSGETLDVG-SE--RFSS-GSR----GSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        97 ~~~~~~~~~~-~~--~~~~-~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ++..  +... ..  .... .+.    .+.|.|.++..+|+|.|+|.|.|....
T Consensus       150 ~g~~--~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          150 DGTE--RRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSS  201 (210)
T ss_dssp             TTEE--CCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCcc--CCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCC
Confidence            8742  2111 00  0111 111    236899999999999999999997553

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.69  E-value=5.8e-16  Score=117.77  Aligned_cols=123  Identities=13%  Similarity=0.174  Sum_probs=88.4

Q ss_pred             CCCCEeEEEEEEeCCCcceeeeEEEEEEe--eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC
Q psy11549         29 RQSAGTYKCSAINTKGEATSNQLKLRVKY--APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG  106 (261)
Q Consensus        29 ~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~--~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~  106 (261)
                      ..|+|.|+|.|.|..+...+..+.|.|..  +|.+...... ..+..|+.+.|.|.+.+.|.+ .+.|++++........
T Consensus       150 ~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~-~~v~~G~~v~L~C~~~g~p~p-~v~W~~~~~~~~~~~~  227 (289)
T 3mjg_X          150 IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQ-TVVRQGENITLMCIVIGNEVV-NFEWTYPRKESGRLVE  227 (289)
T ss_dssp             CCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESC-SEEETTSCEEEEEEEESCSSB-EEEEECTTSSSSCCCC
T ss_pred             eccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCc-ceeEcCCCEEEEEEECCCCCc-ceEEEcCCccCCCccc
Confidence            57999999999988776656667777765  4444333222 457899999999999998877 8999986642111111


Q ss_pred             CceEEe----CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549        107 SERFSS----GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus       107 ~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      ......    ......|.|.++..+|+|.|+|.|.|..|....+..+.+..
T Consensus       228 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~  278 (289)
T 3mjg_X          228 PVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV  278 (289)
T ss_dssp             CEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             ccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEE
Confidence            111111    22346899999999999999999999999988866666654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.68  E-value=1.1e-15  Score=114.29  Aligned_cols=118  Identities=18%  Similarity=0.201  Sum_probs=83.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC-------cc-eeeeEEEEEEeec---------------eeecCceeEEEeeCCCcE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG-------EA-TSNQLKLRVKYAP---------------ICKSDRIVIVGASRSESV   77 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~-------~~-~s~~~~l~V~~~p---------------~~~~~~~~~~~~~~g~~~   77 (261)
                      +|.|.+++.+|+|.|+|.+.|..|       .. ....+.|.|...|               .+...+. .+.+.+|+++
T Consensus        79 ~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~v~~G~~v  157 (257)
T 1f3r_B           79 FLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPS-LLSASVGDRV  157 (257)
T ss_dssp             EEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETS-EECCCTTCCE
T ss_pred             EEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCC-EEEEcCCCCE
Confidence            899999999999999999998854       11 1234578887543               1111122 2568899999


Q ss_pred             EEEEEEeeCCCCceeEEEE--cCCcccccc---------CCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         78 DIHCAVEADPPARSFKWKF--NNSGETLDV---------GSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        78 ~l~C~~~~~~~~~~~~W~~--~~~~~~~~~---------~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +|.|.+.+.+++ .+.|++  ++.......         ...++..  ......|.|.++..+|+|.|+|.|.|..
T Consensus       158 ~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          158 TLSCKGSQNINN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             EEEEECSSCCBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSS
T ss_pred             EEEEEECCcCCC-cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCC
Confidence            999999988877 899999  333211100         0123322  2345579999999999999999999965

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.68  E-value=5.2e-15  Score=108.06  Aligned_cols=172  Identities=12%  Similarity=0.115  Sum_probs=104.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCC----CceeEEEEcCCcccc------------ccCCceEEe-----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP----ARSFKWKFNNSGETL------------DVGSERFSS-----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~----~~~~~W~~~~~~~~~------------~~~~~~~~~-----~~~~~~l~i~~~~~~  127 (261)
                      +.+..|+.+.|.|.+.+.|.    ...+.|++++.....            .....+...     ......|.|.++..+
T Consensus        11 v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~   90 (222)
T 3sbw_C           11 YVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQ   90 (222)
T ss_dssp             EEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcccc
Confidence            66889999999999876553    237999986411000            000112221     223458999999999


Q ss_pred             cCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcce-EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc-ceeE--
Q psy11549        128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCS-VRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL-NLLV--  203 (261)
Q Consensus       128 d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~-v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~-~~~~--  203 (261)
                      |+|.|+|.+.+ .+....  .+.+.|..+|..|.... .....|+.+.|.|.+  .+ .|...+.|++..+.. ....  
T Consensus        91 D~G~Y~C~~~~-~~~~~~--~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~--~g-~P~p~i~W~~~~g~~~~~~~~~  164 (222)
T 3sbw_C           91 DAGVYRCMISY-GGADYK--RITVKVNAPYNKINQRILVVDPVTSEHELTCQA--EG-YPKAEVIWTSSDHQVLSGKTTT  164 (222)
T ss_dssp             GCEEEEEEEES-SSEEEE--EEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEE--EE-BSCCEEEEEETTCCEECCEEEE
T ss_pred             cCeEEEEEEEe-CCCcee--EEEEEEECCCCCCCceeeeeecCCCcEEEEEEe--cC-CCCCeEEEEECCCceecCccce
Confidence            99999999998 454444  44555555665543222 134578999999997  33 554444555542221 1111  


Q ss_pred             EEecCCCCcEEEc---CCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        204 NLTNLDTPAFTLE---DLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       204 ~~~~~~~~~~~i~---~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .........+.+.   .++..+.|.|  +|.|.|.+|....+..+.+.
T Consensus       165 ~~~~~~~~~~~~~~~l~v~~~d~g~Y--~C~a~n~~g~~~~~~~l~v~  210 (222)
T 3sbw_C          165 TNSKREEKLFNVTSTLRINTTTNEIF--YCTFRRLDPEENHTAELVIP  210 (222)
T ss_dssp             EECC----CEEEEEEEEEECCTTCEE--EEEEEETTTTEEEEEEEECC
T ss_pred             EEEcCCCCCEEEEEEEEEeccCCcEE--EEEEEeCccceeeEEEEEec
Confidence            1122222223222   2335788999  99999999988777777665

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.68  E-value=3.5e-16  Score=113.69  Aligned_cols=122  Identities=21%  Similarity=0.281  Sum_probs=83.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcce---eeeEEEEEEee---ceeecCceeEEEeeCCCcEEEEEEEeeC----CCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEAT---SNQLKLRVKYA---PICKSDRIVIVGASRSESVDIHCAVEAD----PPA   89 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~---s~~~~l~V~~~---p~~~~~~~~~~~~~~g~~~~l~C~~~~~----~~~   89 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+...   +..+.|.|..+   |.+..+    ..+.+|+.++|.|.+.+.    |.|
T Consensus        82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~----~~~~~G~~v~L~C~~~~~~~~~p~p  157 (214)
T 2zg1_A           82 CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL----EPLESGRPTRLSCSLPGSCEAGPPL  157 (214)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC------CCCCTTCCEEEEEECTTCCSCSSCC
T ss_pred             EEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC----ccccCCCeEEEEEEeccCCCCCCCc
Confidence            4899999999999999999998764321   24678888763   333322    125689999999999774    555


Q ss_pred             ceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549         90 RSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus        90 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                       .+.|++++... .   ...   ....+.|.|..+..+|.|.|+|.|.|..+.......+.+.|
T Consensus       158 -~v~W~~~~~~~-~---~~~---~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          158 -TFSWTGNALSP-L---DPE---TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             -EEEEESSTTSS-S---CSS---CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             -eEEEeCCCCcc-C---CCC---ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence             89999887421 1   111   12344799999999999999999999765544444554443

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.68  E-value=2.6e-16  Score=113.31  Aligned_cols=167  Identities=13%  Similarity=0.135  Sum_probs=101.9

Q ss_pred             EEeeCCCcEEEEEEEeeC----CCCceeEEEEcCCccccccC---------CceEEe-CCceeEEEEecCCCCcCeEEEE
Q psy11549         69 VGASRSESVDIHCAVEAD----PPARSFKWKFNNSGETLDVG---------SERFSS-GSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~---------~~~~~~-~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +.+..|+++.|.|.+...    +.+ .+.|++++........         ..+... ......|.|.++..+|+|.|+|
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~-~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQT-RIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHC-EEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEecccCCCccccccc-EEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            567899999999998643    334 7999987642110000         111111 2234579999999999999999


Q ss_pred             EEEcCCceEEe---eEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce-eEEEecCCC
Q psy11549        135 AAQNAIGTQVT---PCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL-LVNLTNLDT  210 (261)
Q Consensus       135 ~~~~~~~~~~~---~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~  210 (261)
                      .+.+..|....   ...+.+.+..++..|.........|+.+.|.|.+  .++.|..-+.|+++...... .........
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~--~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~  160 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICST--SGGFPEPHLSWLENGEELNAINTTVSQDPE  160 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEE--EEESSCEEEEEEESSCEECCSEEEEEECTT
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEec--CCccCCCEEEEEECCEECccccceEEecCC
Confidence            99997654322   3356666656555554433333568899999997  44666554555555332221 111111111


Q ss_pred             -CcEEE---cCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549        211 -PAFTL---EDLGLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       211 -~~~~i---~~~~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                       ..+.+   ..++..|.|.|  +|.|.|..|...
T Consensus       161 ~~~~~~~~~~~v~~~d~g~Y--~C~a~n~~~~~s  192 (201)
T 1dr9_A          161 TELYAVSSKLDFNMTTNHSF--MCLIKYGHLRVN  192 (201)
T ss_dssp             TCCEEEEEEEEEETTSCEEE--EEEEEETTCCEE
T ss_pred             CcEEEEEEEEEEEecCCCEE--EEEEecCcceee
Confidence             33222   23345788999  999999998654

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.68  E-value=9.4e-17  Score=121.23  Aligned_cols=217  Identities=14%  Similarity=0.107  Sum_probs=82.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCc--eeEEEEcC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPAR--SFKWKFNN   98 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~~~W~~~~   98 (261)
                      .|.|.+++.+  |.|+|++. ..+...+..+.|.|..+|...........+.+|+.++|.|.+.+..++.  +|.|++++
T Consensus        51 ~~~l~~v~~~--~~y~C~~~-~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~  127 (291)
T 1mq8_A           51 VYELSNVQED--SQPMCYSN-CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE  127 (291)
T ss_dssp             EEEEESCCSC--CCCEEEEE-CSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSS
T ss_pred             EEEEEecccC--CeEEEEEE-cCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECC
Confidence            4888998854  46999985 4445557778899988876543332213377899999999999886643  58999987


Q ss_pred             CccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCce------EEeeEEEEEEeCCCCCC-CCcce-EEeecC
Q psy11549         99 SGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT------QVTPCLYQVVLAGKPQP-PQNCS-VRNETT  170 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~------~~~~~~~~v~~~~~p~~-p~~~~-v~~~~~  170 (261)
                      .....    ...........|.+.....++.+.|+|+|.+..+.      ...+....+.|..+|.. +.... .....|
T Consensus       128 ~~l~~----~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG  203 (291)
T 1mq8_A          128 KELKR----EPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVD  203 (291)
T ss_dssp             SEEEE----EECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------
T ss_pred             EEeec----ccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCC
Confidence            42111    11111222345777777777778999999986552      11223445556555432 22110 012359


Q ss_pred             CeEEEEeecCCCCCCCeE--EEEEEEeCCccceeEEEecCCCCcEEEcCC---CCCCccEEEEEEEEEcCCCcCCceeee
Q psy11549        171 SSVHISCTPGYDGGLPQT--FTLELYSASDLNLLVNLTNLDTPAFTLEDL---GLDGTVLMRVVISGVNAKGRSLPVIWD  245 (261)
Q Consensus       171 ~~~~l~c~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~l~~~~~Y~~~~~a~N~~G~~~~s~~~  245 (261)
                      +.++|+|..  ++..|..  ..+|+++......  .... ....+++...   ..++.+.|++.|.|.|.....+....+
T Consensus       204 ~~v~l~C~~--~g~~P~~~~~v~w~~~g~~l~~--~~~~-~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l  278 (291)
T 1mq8_A          204 TQGTVVCSL--DGLFPVSEAQVHLALGDQRLNP--TVTY-GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV  278 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CeEEEEEEc--CCCCCCcccEEEEEECCEecCc--eeee-cCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEE
Confidence            999999998  5555653  3344433332211  1111 1233444331   133577888899999866666777766


Q ss_pred             eeee
Q psy11549        246 DFSM  249 (261)
Q Consensus       246 ~~~~  249 (261)
                      .++.
T Consensus       279 ~v~~  282 (291)
T 1mq8_A          279 TIYS  282 (291)
T ss_dssp             ----
T ss_pred             EEEc
Confidence            6654

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.68  E-value=6.7e-15  Score=104.33  Aligned_cols=162  Identities=10%  Similarity=0.157  Sum_probs=101.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCC-ceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         69 VGASRSESVDIHCAVEADPPA-RSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      ..+.+|+.+.|.|.+.+.+.+ ..+.|++++.  .+....    .......|.|.  ..+|+|.|+|.+.+...   .  
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~--~l~~~~----~~~~~~~l~i~--~~~d~G~Y~C~~~n~~~---~--   74 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGV--VLKEDA----LPGQKTEFKVD--SDDQWGEYSCVFLPEPM---G--   74 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSE--EEECTT----CCCSEEEEEEC--GGGCCEEEEEEEESTTS---C--
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCE--Eeeccc----ccCCcEEEEEe--chhhCeEEEEEEECCcC---c--
Confidence            456789999999999887654 2799998763  221111    11123356565  58999999999998322   2  


Q ss_pred             EEEEEeCCCCCCCCc-ceEEeecCCeEEEEeecCCCCCC-CeEEEEEEEeCCcc--------ceeE-EEecCCCCcEEEc
Q psy11549        148 LYQVVLAGKPQPPQN-CSVRNETTSSVHISCTPGYDGGL-PQTFTLELYSASDL--------NLLV-NLTNLDTPAFTLE  216 (261)
Q Consensus       148 ~~~v~~~~~p~~p~~-~~v~~~~~~~~~l~c~~~~~~~~-p~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~i~  216 (261)
                      .+.+.+..+|..... .......|+.+.|.|.+  .+.. +..+.| ++.....        ...+ .........|.|.
T Consensus        75 ~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~--~g~p~~~~i~W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  151 (184)
T 3b5h_A           75 TANIQLHGPPRVKAVKSSEHINEGETAMLVCKS--ESVPPVTDWAW-YKITDSEDKALMNGSESRFFVSSSQGRSELHIE  151 (184)
T ss_dssp             EEEEEECCSCCCEESCSEEEECTTSCEEEEEEC--CCSSCCCEEEE-EECCSSSCEECCTTGGGTEEEEEETTEEEEEEC
T ss_pred             EEEEEEecCCceeecCCCcEEcCCCcEEEEEEE--CCCCCCCeEEE-EEcCCCCCEEeecCCCCEEEEEecCCeeEEEEe
Confidence            334555555642111 12334569999999997  4434 234444 4411111        0112 1122233589999


Q ss_pred             CCC-CCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        217 DLG-LDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       217 ~~~-l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      +++ ..|.|.|  +|.|.|..|....+..+.|.
T Consensus       152 ~v~~~~d~G~Y--~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          152 NLNMEADPGQY--RCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             SCCTTTSSEEE--EEEEEETTEEEEEEEEEEEC
T ss_pred             eccccccCceE--EEEEEeCCCcceEEEEEEEe
Confidence            998 7999999  99999999988777666654

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.68  E-value=1.4e-15  Score=112.43  Aligned_cols=119  Identities=19%  Similarity=0.226  Sum_probs=82.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcc----eeeeEEEEEEeec------------eeecCceeEEEeeCCCcEEEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEA----TSNQLKLRVKYAP------------ICKSDRIVIVGASRSESVDIHCAV   83 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~----~s~~~~l~V~~~p------------~~~~~~~~~~~~~~g~~~~l~C~~   83 (261)
                      .+|.|.+++.+|+|.|+|.+.|..+..    ......|.|...+            .+...+.. +.+.+|++++|.|.+
T Consensus        73 ~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~-~~v~~G~~v~L~C~~  151 (238)
T 2p1y_A           73 FSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQS-LTVWEGETAILNCSY  151 (238)
T ss_dssp             CEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSE-EEEETTSCEEEEEEC
T ss_pred             EEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCce-EEEeCCCeEEEEEEE
Confidence            489999999999999999999876521    1234577776543            22222222 668899999999999


Q ss_pred             eeCCCCceeEEEEcCCccccc-----------cCCceEEe----CCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         84 EADPPARSFKWKFNNSGETLD-----------VGSERFSS----GSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        84 ~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+.+.+ .+.|++++.+....           ....++..    ......|.|.++..+|+|.|+|.|.|..
T Consensus       152 ~~~p~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          152 ENSAFD-YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             CCTTCC-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             ecCCCC-cEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence            998887 89999865321110           01122222    2335689999999999999999999873

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.68  E-value=6.9e-15  Score=120.65  Aligned_cols=124  Identities=16%  Similarity=0.168  Sum_probs=76.3

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC-----------c-ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG-----------E-ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAV   83 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~-----------~-~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~   83 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+           . .....+.|.|..    +|.+............|+.+.|.|.+
T Consensus        80 ~sL~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~  159 (512)
T 1zvo_C           80 FSLNLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLI  159 (512)
T ss_pred             EEEEECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEE
Confidence            4899999999999999999987642           1 112345777763    33333111100001246899999999


Q ss_pred             eeC-CCCceeEEEEcCCccccccCCceEEe-CC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         84 EAD-PPARSFKWKFNNSGETLDVGSERFSS-GS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        84 ~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~-~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .+. |.+..+.|++++....... ...... .+   ..+.|.|.....+ .|.|+|.|.|..+....
T Consensus       160 ~g~~P~p~~v~W~~~~~~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~  224 (512)
T 1zvo_C          160 TGYHPTSVTVTWYMGTQSQPQRT-FPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKK  224 (512)
T ss_pred             EeeecCceEEEEEcCcccCceEe-cCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceE
Confidence            987 4445899998543211100 011111 11   1235788877776 89999999998776544

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.68  E-value=1.3e-14  Score=108.44  Aligned_cols=160  Identities=18%  Similarity=0.190  Sum_probs=98.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc------------cCCceEE----eCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD------------VGSERFS----SGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~------------~~~~~~~----~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+.+|++++|.|.+.+.+.+ .+.|++...+....            ....++.    .......|.|.++..+|+|.|
T Consensus        13 ~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y   91 (256)
T 3tf7_C           13 VTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVY   91 (256)
T ss_dssp             EEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEE
T ss_pred             EEecCCCeEEEEEEeCCCCCc-eEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEE
Confidence            678899999999999988777 89999843221110            0011222    234456799999999999999


Q ss_pred             EEEEEcCCce----EEeeEEEEEEeC------------------CCCC---CCCcceEEeecCCeEEEEeecCCCCCCCe
Q psy11549        133 SCAAQNAIGT----QVTPCLYQVVLA------------------GKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQ  187 (261)
Q Consensus       133 ~C~~~~~~~~----~~~~~~~~v~~~------------------~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~  187 (261)
                      +|.+.+..+.    ......+.|...                  .+|.   .|..  +....|+.++|.|.+  .+. +.
T Consensus        92 ~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~--~~v~~G~~v~L~C~~--~~~-~~  166 (256)
T 3tf7_C           92 FCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRN--KVTVTGENVTLSCRQ--TNS-HN  166 (256)
T ss_dssp             EEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSE--EEEETTCCEEECEEE--CSC-CS
T ss_pred             EEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCE--EEEeCCCcEEEEEEc--CCC-ce
Confidence            9999986531    112223444321                  1111   2222  233469999999997  333 33


Q ss_pred             EEEEEEEeC-CccceeEEE--------------------ecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        188 TFTLELYSA-SDLNLLVNL--------------------TNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       188 ~~~~~~~~~-~~~~~~~~~--------------------~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      . +.|++.. +........                    .......|.|.+++.+|+|.|  +|.|.|..|
T Consensus       167 ~-v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~a~n~~g  234 (256)
T 3tf7_C          167 Y-MYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLY--FCASSDAPG  234 (256)
T ss_dssp             E-EEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEE--EEEEEEETT
T ss_pred             E-EEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEE--EEEecCCCC
Confidence            3 3444432 222111110                    012334799999999999999  999999876

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.68  E-value=5.2e-16  Score=119.63  Aligned_cols=173  Identities=12%  Similarity=0.112  Sum_probs=103.0

Q ss_pred             EEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCe
Q psy11549         51 LKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        51 ~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  130 (261)
                      +...+..+|.+...+.  ..+..|++++|.|.+.+. .+ .+.|++++.....   .  .........|.|.++..+|+|
T Consensus        17 ~~~~~~~~P~i~~~p~--~~v~~G~~v~L~C~~~~~-~~-~~~W~k~g~~~~~---~--~~~~~~~~~L~I~~v~~~D~G   87 (316)
T 3vh8_G           17 SHMGGQDKPFLSAWPS--AVVPRGGHVTLRCHYRHR-FN-NFMLYKEDRIHIP---I--FHGRIFQESFNMSPVTTAHAG   87 (316)
T ss_dssp             -------CCEEEEESC--SEEETTSCEEEEEEBTTB-CC-SEEEEESSCSSSC---H--HHHCCBSSCEEECSCCGGGCE
T ss_pred             cccCCCCCCEeeccCC--CccCCCCCEEEEEEccCC-Cc-eEEEEeCCCccce---e--ecCCcceEEEEECCCCcccCe
Confidence            3444555666654433  246799999999999887 34 7999998753111   0  011122347999999999999


Q ss_pred             EEEEEEEcCCc---eEEeeEEEEEEeCCCCCCCCcce---EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-eeE
Q psy11549        131 TLSCAAQNAIG---TQVTPCLYQVVLAGKPQPPQNCS---VRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLV  203 (261)
Q Consensus       131 ~y~C~~~~~~~---~~~~~~~~~v~~~~~p~~p~~~~---v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-~~~  203 (261)
                      .|+|.+.+..+   ....+..+.+.+...+.+|....   .....|+.++|.|.+   .+.+..+.|+ +...... ...
T Consensus        88 ~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~---~~~~~~~~w~-k~g~~~~~~~~  163 (316)
T 3vh8_G           88 NYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWS---DIMFEHFFLH-KEGISKDPSRL  163 (316)
T ss_dssp             EEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEE---SSCCSEEEEE-ETTCCSCCEEE
T ss_pred             EEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcC---CCCCcEEEEE-ECCCcccccee
Confidence            99999986422   11122234444434333332110   012469999999997   2345556554 4333221 111


Q ss_pred             --E-EecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        204 --N-LTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       204 --~-~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                        . ........|.|.+++..|.|.|  +|.|.|..|.
T Consensus       164 ~~~~~~~~~~~~L~i~~v~~~D~G~Y--~C~a~n~~g~  199 (316)
T 3vh8_G          164 VGQIHDGVSKANFSIGPMMLALAGTY--RCYGSVTHTP  199 (316)
T ss_dssp             ECEEETTEEEEEEEECSCCGGGCEEE--EEEEECTTCT
T ss_pred             eeeecCCCceEEEEECCCChhhCceE--EEEEecCCCC
Confidence              1 1111336799999999999999  9999999885

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.67  E-value=4.1e-15  Score=107.98  Aligned_cols=174  Identities=12%  Similarity=0.076  Sum_probs=106.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCc--eeEEEEcCCcccccc---------------CCceEEe-----CCceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVEADPPAR--SFKWKFNNSGETLDV---------------GSERFSS-----GSRGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~---------------~~~~~~~-----~~~~~~l~i~~~~~  126 (261)
                      +.+..|++++|.|.+.+.+.+.  .+.|++++.......               ...++..     ......|.|.++..
T Consensus         9 vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~   88 (218)
T 4frw_A            9 VTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAVQ   88 (218)
T ss_dssp             EEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCCG
T ss_pred             EEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeeccH
Confidence            6788999999999999887652  489998765322100               0011111     12234699999999


Q ss_pred             CcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC--CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEE
Q psy11549        127 LDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ--PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVN  204 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~--~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~  204 (261)
                      +|+|.|.|.+.+..+....... .+.+..++.  ...........+..+.+.|.+   .+.|...+.|++..........
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~---~g~p~p~i~W~~~~~~~~~~~~  164 (218)
T 4frw_A           89 ADEGEYECRVSTFPAGSFQARL-RLRVLVPPLPSLNPGPALEEGQGLTLAASCTA---EGSPAPSVTWDTEVKGTTSSRS  164 (218)
T ss_dssp             GGCEEEEEEEEEETTEEEEEEE-EEEEEBCCCCEEEECSCEETTCCSEEEEEEEE---EEBSCCEEEEEESSCCEEEEEE
T ss_pred             HHCCceeEEEEeccCceeeeEE-EEEEeeeccceeeeeeeeeeeeccccceeeec---cCCcCceEEEEECCcccccCce
Confidence            9999999999876554443222 222222222  111223334568889999997   3344333344454333221111


Q ss_pred             EecC----CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        205 LTNL----DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       205 ~~~~----~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      ....    ....|.|..+...|+|.|  +|.|.|++|..+....+.+.
T Consensus       165 ~~~~~~~~~~s~L~i~~~~~~d~g~Y--tC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          165 FKHSRSAAVTSEFHLVPSRSMNGQPL--TCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             EECSSSEEEEEEEEECCCGGGTTCEE--EEEEECTTCSSCEEEEEECC
T ss_pred             EecCCcEEEEEEEEEeeCCHHhCeEE--EEEEEeCCCCeEEEEEEEEE
Confidence            1111    124688999889999999  99999999987665555443

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.67  E-value=2.9e-16  Score=114.81  Aligned_cols=132  Identities=23%  Similarity=0.255  Sum_probs=86.9

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee---ceeecCceeEEEeeCCCcEEEEEEE-eeCCCCceeEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA---PICKSDRIVIVGASRSESVDIHCAV-EADPPARSFKW   94 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~---p~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~~~~W   94 (261)
                      +.+|.|.+++.+|+|.|+|.+.+... . +..+.|.|..+   |.+.....  ..+..|+.+.|.|.+ .+.|.+ .+.|
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~~~-~-~~~~~l~V~~~~~~p~i~~~~~--~~v~~G~~~~l~C~~~~g~P~~-~v~W  145 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQDF-D-SAAVSLQVAAPYSKPSMTLEPN--KDLRPGNMVTITCSSYQGYPEA-EVFW  145 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEECCC-C-CCCCCCCCCBCCCCCEEECCC-------CCSEEEEEEEEEEEBSCC-EEEE
T ss_pred             eEEEEECCcccccCEEEEEEEEeCCC-c-eEEEEEEEEcCCCCCcEEeCCC--ceecCCceEEEEEecccccCCC-eEEE
Confidence            56899999999999999999998632 2 44566777654   44433322  356789999999999 676777 8999


Q ss_pred             EEcCCccccccCCce-EE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549         95 KFNNSGETLDVGSER-FS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~-~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      ++++. ..+...... ..  ..+....|.|.++..+|.|.|+|.|.|..|....  .+.+.+..+|.
T Consensus       146 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~--~~~l~V~~~p~  209 (222)
T 4i0k_A          146 KDGQG-VPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDA--HGSVTITGQPL  209 (222)
T ss_dssp             ECTTS-CBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEE--EEEEECCC---
T ss_pred             EcCCC-ccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCce--EEEEEEeCCcc
Confidence            87432 222111111 11  1222345788999999999999999999988777  44555555553

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.67  E-value=1.6e-15  Score=113.58  Aligned_cols=154  Identities=14%  Similarity=0.099  Sum_probs=103.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+.+|+.+.|.|.+.+.+.+..+.|++++..  +..         ....|.|.++..+|+|.|+|.+.+..+...  ..
T Consensus        11 ~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~--~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~--~~   77 (262)
T 3rjd_A           11 VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTA--TQT---------STPSYRITSASVNDSGEYRCQRGLSGRSDP--IQ   77 (262)
T ss_dssp             SEEETTCCEEEEEECSSCCCTTCEEEEETTEE--CSC---------CSSEEEESSCCGGGCEEEEEEESSSCCCCC--EE
T ss_pred             EEeeCCCeEEEEEECCCCCCCceEEEEECCEE--eec---------cCCeEEEecCCcccCeEEEEEEecCCcccc--EE
Confidence            45779999999999998877668999997642  211         133699999999999999999998654432  23


Q ss_pred             EEEEeCCCCC--CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        149 YQVVLAGKPQ--PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       149 ~~v~~~~~p~--~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      +.+.  .++.  .|....+  ..|+.+.|.|..  ..+.|.....|++.....  ..   ......+.|.+++..|.|.|
T Consensus        78 l~v~--~~~~~~~~~~~~~--~~g~~v~l~C~~--~~~~p~~~v~W~~~g~~~--~~---~~~~~~l~i~~~~~~d~G~Y  146 (262)
T 3rjd_A           78 LEIH--RGWLLLQVSSRVF--TEGEPLALRCHA--WKDKLVYNVLYYRNGKAF--KF---FHWNSNLTILKTNISHNGTY  146 (262)
T ss_dssp             EEEE--CSSEEEEESCSEE--ETTSCEEEEEEE--GGGCCCEEEEEEETTEEE--EE---EEECCCEEESSCCGGGCEEE
T ss_pred             EEEe--ccceEecCCCeEE--ecCCeEEEEEEc--cCCCCCceEEEEECCccc--cc---cCCCCeEEEEECChhhCEEE
Confidence            3333  3321  2222233  459999999996  345554444444433222  11   11247899999999999999


Q ss_pred             EEEEEEEcCCCcCCceeeeeee
Q psy11549        227 RVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       227 ~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                        +|.|.|..|.......+.+.
T Consensus       147 --~C~~~n~~~~~~~~~~l~V~  166 (262)
T 3rjd_A          147 --HCSGMGKHRYTSAGISVTVK  166 (262)
T ss_dssp             --EEEEESSSEEEEECEEEEEE
T ss_pred             --EEEEeCCCCccccceEEEec
Confidence              99999999755554455444

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.67  E-value=2.5e-15  Score=112.30  Aligned_cols=119  Identities=17%  Similarity=0.255  Sum_probs=82.5

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC-----------CCcceeeeEEEEEEeec---------------eeecCceeEEEeeCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT-----------KGEATSNQLKLRVKYAP---------------ICKSDRIVIVGASRS   74 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~-----------~~~~~s~~~~l~V~~~p---------------~~~~~~~~~~~~~~g   74 (261)
                      +|.|.+++.+|+|.|+|.+.+.           ........+.|.|...+               .+...+.. ..+.+|
T Consensus        86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G  164 (256)
T 3juy_B           86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGT-LSLSPG  164 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSE-EEECTT
T ss_pred             EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCe-EEEeCC
Confidence            6999999999999999999886           12222345678887632               22222222 678899


Q ss_pred             CcEEEEEEEeeCCCCceeEEEEcCCcccccc-----------CCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         75 ESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        75 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----------~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      ++++|.|.+.+.+....+.|++...+.....           ...++.  .......|.|.++..+|+|.|+|.+.+..
T Consensus       165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  243 (256)
T 3juy_B          165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGAS  243 (256)
T ss_dssp             SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSS
T ss_pred             CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCC
Confidence            9999999999877623899998432211110           112222  23345579999999999999999999854

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.66  E-value=1.8e-15  Score=114.32  Aligned_cols=119  Identities=16%  Similarity=0.159  Sum_probs=80.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece-------------eecCceeEEEeeCCCcEEEEEEEeeCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI-------------CKSDRIVIVGASRSESVDIHCAVEADP   87 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~   87 (261)
                      +|.|.+++.+|+|.|+|.+.|..+......+.|.|...|.             +.........+.+|++++|.|.+.+.+
T Consensus        83 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~  162 (276)
T 3auv_A           83 TLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFT  162 (276)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSC
T ss_pred             EEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCcc
Confidence            8999999999999999999987654334446777776532             111111125688999999999999876


Q ss_pred             C-CceeEEEEcCCccccc----------------cCCceEEeC----CceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         88 P-ARSFKWKFNNSGETLD----------------VGSERFSSG----SRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        88 ~-~~~~~W~~~~~~~~~~----------------~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      + ...+.|++++.+....                ....++...    .....|.|.++..+|+|.|+|.+.|.
T Consensus       163 ~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          163 ISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             GGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             CCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcC
Confidence            3 2389999864221110                012233322    23457999999999999999999997

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.66  E-value=7.1e-16  Score=111.96  Aligned_cols=121  Identities=17%  Similarity=0.207  Sum_probs=81.4

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE----eeceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK----YAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWK   95 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~   95 (261)
                      +|.|.+++.+|+|.|+|.+.|..+......+.|.|.    .+|.+...... .....|+.++|.|.+.+.++ +..+.|+
T Consensus        74 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~  152 (212)
T 1q0x_L           74 ALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPS-SEELSTAKATLVCTITDFYPGVVTVDWK  152 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCC-HHHccCCcEEEEEEEEEEeCCCeEEEEE
Confidence            899999999999999999998876443445567774    34443321111 12346899999999998654 3489999


Q ss_pred             EcCCccccccCCc--eEEeCC-----ceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         96 FNNSGETLDVGSE--RFSSGS-----RGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        96 ~~~~~~~~~~~~~--~~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      +++..  +.....  ......     ..+.|.|.....+|.|.|+|.|.|......
T Consensus       153 k~g~~--l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~  206 (212)
T 1q0x_L          153 VDGTP--VTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSN  206 (212)
T ss_dssp             ETTEE--ECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEE
T ss_pred             ECCEe--CCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCccee
Confidence            98742  211110  011111     124688998888999999999999765433

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.66  E-value=8.5e-16  Score=112.94  Aligned_cols=121  Identities=17%  Similarity=0.216  Sum_probs=83.2

Q ss_pred             EEECCeEEEccCCCCCCEeEEEEEEeCC-CcceeeeEEEEEEeecee---ecCceeEEEeeCCCcE-EEEEEE-eeCCCC
Q psy11549         16 ILSNQSLVLQKVSRQSAGTYKCSAINTK-GEATSNQLKLRVKYAPIC---KSDRIVIVGASRSESV-DIHCAV-EADPPA   89 (261)
Q Consensus        16 ~~~~~~L~i~~~~~~D~G~Y~C~~~~~~-~~~~s~~~~l~V~~~p~~---~~~~~~~~~~~~g~~~-~l~C~~-~~~~~~   89 (261)
                      ...++.|.|.+++.+|+|.|+|.+.+.. +.. +..+.|.|..+|..   ...... ..+..|+.+ .|.|.+ .+.|.|
T Consensus        73 ~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~-~~~~~g~~~~~l~C~~~~~~p~p  150 (231)
T 2pet_A           73 LDSQGRLVLAEAQVGDERDYVCVVRAGAAGTA-EATARLNVFAKPEATEVSPNKGT-LSVMEDSAQEIATCNSRNGNPAP  150 (231)
T ss_dssp             ECTTCCEEESSCCGGGCEEEEEEEECGGGCEE-EEEEEEEEEBCCCCCEEEECCSS-CCTTCCSEEEEEEEEEEEEBSCC
T ss_pred             cCCCceEEEcccCcccCceEEEEEEecCCCce-EEEEEEEEEecCCCcEEecCCcc-eeecCCCceEEEEEEeECcccCC
Confidence            3445679999999999999999999987 544 67788999877542   222221 335578887 999999 788877


Q ss_pred             ceeEEEEcCCcccccc-CCceEEeC------Cc-----eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         90 RSFKWKFNNSGETLDV-GSERFSSG------SR-----GSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        90 ~~~~W~~~~~~~~~~~-~~~~~~~~------~~-----~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                       .+.|++++....... ...++...      ..     .+.|.|.....+|.|.|+|.|.|.
T Consensus       151 -~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          151 -KITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             -EEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             -EEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence             899999874322111 00121111      10     145788766666799999999994

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.66  E-value=5e-16  Score=113.12  Aligned_cols=119  Identities=14%  Similarity=0.142  Sum_probs=79.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC-cceeeeEEEEEE---eeceeecCceeEEEeeCCCcEEEEEEEeeCC-CCceeEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRVK---YAPICKSDRIVIVGASRSESVDIHCAVEADP-PARSFKWK   95 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~-~~~s~~~~l~V~---~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~~~~W~   95 (261)
                      +|.|.+++.+|+|.|+|.+.|..+ ........|.|.   .+|.+...... .....|+.++|.|.+.+.+ ++..+.|+
T Consensus        73 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~  151 (216)
T 2xzc_L           73 TLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPS-DEQLKSGTASVVCLLNNFYPREAKVQWK  151 (216)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCC-hhhccCCcEEEEEEEEeEcCCceEEEEE
Confidence            899999999999999999999876 222334567775   23443321111 1123588999999999854 44489999


Q ss_pred             EcCCccccccC-Cce--EEeC-C----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         96 FNNSGETLDVG-SER--FSSG-S----RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        96 ~~~~~~~~~~~-~~~--~~~~-~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      +++..  +... ...  .... +    ..+.|.|..+..+|.|.|+|.|.|....
T Consensus       152 k~g~~--~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          152 VDNAL--QSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             ETTEE--CCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             ECCee--cCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            98742  2111 000  0111 1    1236889999999999999999997644

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.66  E-value=1.6e-15  Score=113.92  Aligned_cols=117  Identities=19%  Similarity=0.198  Sum_probs=88.6

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCC-Ccce--eeeEEEEEEeeceeecCc-eeEEEeeCCCcEEEEEEEeeCCCCceeEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTK-GEAT--SNQLKLRVKYAPICKSDR-IVIVGASRSESVDIHCAVEADPPARSFKWK   95 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~-~~~~--s~~~~l~V~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~   95 (261)
                      +.|.|..+..+|+|.|+|.|.|.. |...  +..+.|.|.++|.+.... .....+.+|+.+.|.|.+.+.|.| .+.|+
T Consensus       142 ~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p-~i~W~  220 (265)
T 2oz4_A          142 AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLP-ELKCL  220 (265)
T ss_dssp             ECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCC-EEEEE
T ss_pred             EEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCC-eEEEE
Confidence            468899999999999999998654 6542  367889999988875432 223678899999999999999988 89999


Q ss_pred             EcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549         96 FNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      +++.. .  ..      .+   .+  ..+..+|+|.|+|.|.|..|.......+.|
T Consensus       221 ~~~~~-~--~~------~g---~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  262 (265)
T 2oz4_A          221 KDGTF-P--LP------IG---ES--VTVTRDLEGTYLCRARSTQGEVTREVTVNV  262 (265)
T ss_dssp             ETTTE-E--CC------TT---SC--EECCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCcc-c--CC------CC---cE--EEeehhhCeEEEEEEECCCCcEEEEEEEEE
Confidence            98751 1  11      11   12  237789999999999999988777544444

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.66  E-value=2.2e-15  Score=109.37  Aligned_cols=164  Identities=15%  Similarity=0.160  Sum_probs=100.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|+.+.|.|.+.+.+.+ .+.|++.+.+....           ....++.  .......|.|.++..+|+|.|+|.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3d9a_L           11 LSVTPGNSVSLSCRASQSIGN-NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (213)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEeCCCcEEEEEECCCCCCC-CEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEe
Confidence            668899999999999998877 79999865322110           0012222  233455899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEEeCCCCCCCCcceEE-----eecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcccee-E---EE
Q psy11549        136 AQNAIGTQVTPCLYQVVLAGKPQPPQNCSVR-----NETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLL-V---NL  205 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~-----~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~-~---~~  205 (261)
                      +.+..+..... ...+.+...+.+|.. .+.     ...|..++|.|.+  .+..|.. ...|+++....... .   ..
T Consensus        90 ~~~~~~~~~~~-~~~l~V~~~~~~p~v-~~~~~~~~~~~g~~~~l~C~~--~g~~p~~~~v~W~k~g~~~~~~~~~~~~~  165 (213)
T 3d9a_L           90 QSNSWPYTFGG-GTKLEIKRADAAPTV-SIFPPSSEQLTSGGASVVCFL--NNFYPKDINVKWKIDGSERQNGVLNSWTD  165 (213)
T ss_dssp             ECSSSSCEECC-CEEEEECCCCBCCEE-EEECCCHHHHHTTEEEEEEEE--EEEBSSCCEEEEEETTEEECTTEEEEECC
T ss_pred             eecCCcceeCC-CEEEEEecCCCCcee-EeECCChhhcCCCcEEEEEEE--eeecCCceEEEEEcCCCcCcceeeecCCC
Confidence            99986643321 123334333323321 111     1247899999997  3334432 33444443221111 1   11


Q ss_pred             ecCCC------CcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        206 TNLDT------PAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       206 ~~~~~------~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      .....      ..|.|.++..+|+|.|  +|.|.|.....
T Consensus       166 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y--~C~a~n~~~~~  203 (213)
T 3d9a_L          166 QDSKDSTYSMSSTLTLTKDEYERHNSY--TCEATHKTSTS  203 (213)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHHCCEE--EEEEECTTCSS
T ss_pred             ccCCCCCEEEEEEEEEeccccCCCCEE--EEEEEEccCCC
Confidence            11111      2788888888899999  99999988765

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.66  E-value=2.2e-15  Score=96.82  Aligned_cols=95  Identities=21%  Similarity=0.317  Sum_probs=69.5

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      .+|.+...+.. +.+.+|+.+.|.|.+.+.|.| .+.|++++..  +.. ....+...+....|.|.++..+|+|.|+|.
T Consensus        12 ~pP~f~~~p~~-~~v~~G~~~~l~C~~~G~P~p-~v~W~k~g~~--l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   87 (107)
T 3knb_B           12 SPPCFLRFPRP-VRVVSGAEAELKCVVLGEPPP-VVVWEKGGQQ--LAASERLSFPADGAEHGLLLTAALPTDAGVYVCR   87 (107)
T ss_dssp             EEEEEEECCCC-EEEETTSCEEEEEEEEEESCC-EEEEEETTEE--CCCCSSEECCEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeCCCc-EEEeCCCcEEEEEEEEEecCC-EEEEEECccc--ccceeeEEEeecCceEEEEEecCChhhCEEEEEE
Confidence            35666555544 678899999999999999988 8999998742  222 222233345566899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEEeCCCC
Q psy11549        136 AQNAIGTQVTPCLYQVVLAGKP  157 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~~~~~p  157 (261)
                      |.|..|.......  |.|..+|
T Consensus        88 a~N~~G~~~~~~~--l~V~~pP  107 (107)
T 3knb_B           88 ARNAAGEAYAAAA--VTVLEPP  107 (107)
T ss_dssp             EEETTEEEEEEEE--EEEEC--
T ss_pred             EEECCCEEEEEEE--EEEEcCC
Confidence            9999998777544  4444443

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.65  E-value=2.7e-15  Score=111.88  Aligned_cols=183  Identities=13%  Similarity=0.028  Sum_probs=106.5

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +|.+...+.  ..+..|++++|.|.+.. +.+ .+.|++++....................|.|.++..+|+|.|+|.+.
T Consensus         7 kP~i~~~P~--~~V~~G~~VtL~C~~~~-~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   82 (257)
T 1b6u_A            7 KPSLLAHPG--PLVKSEETVILQCWSDV-RFQ-HFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS   82 (257)
T ss_dssp             CCEECCBSC--SEEESSCCEEEEEEESS-CCS-EEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred             CCEEEEcCC--CEecCCCCEEEEEecCC-CCc-EEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence            444443332  34679999999999874 334 89999987532110000000112234579999999999999999998


Q ss_pred             cCCc---eEEeeEEEEEEeCCCCCCCCcc---eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--EEe--c
Q psy11549        138 NAIG---TQVTPCLYQVVLAGKPQPPQNC---SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--NLT--N  207 (261)
Q Consensus       138 ~~~~---~~~~~~~~~v~~~~~p~~p~~~---~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~--~  207 (261)
                      +...   ....+..+.+.|...+.+|...   ......|+.++|.|.+  .+ .+..|.| +++........  ...  .
T Consensus        83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~--~~-~~~~~~w-~k~g~~~~~~~~~~~~~~~  158 (257)
T 1b6u_A           83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSS--RS-SYDMYHL-SREGEAHERRFSAGPKVNG  158 (257)
T ss_dssp             CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEEC--SS-CCSEEEE-EETTSSCEECCBCBCCSSS
T ss_pred             ccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeC--CC-CCcEEEE-EECCcccCcccccccccCC
Confidence            6421   1111223344443332222100   0012469999999997  33 3445554 45443322110  011  1


Q ss_pred             CCCCcEEEcCCCCCCccEEEEEEEEEcCC---CcCCceeeeeeeeccc
Q psy11549        208 LDTPAFTLEDLGLDGTVLMRVVISGVNAK---GRSLPVIWDDFSMSGA  252 (261)
Q Consensus       208 ~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~---G~~~~s~~~~~~~~~~  252 (261)
                      .....|.|.+++  |+|.|  +|.|.|..   ..+..|..+++...++
T Consensus       159 ~~~~~l~I~~v~--D~G~Y--~C~a~~~~~p~~~s~~S~pl~L~V~g~  202 (257)
T 1b6u_A          159 TFQADFPLGPAT--HGGTY--RCFGSFRDSPYEWSNSSDPLLVSVTGN  202 (257)
T ss_dssp             CCBEEEEEEECC--SCEEE--EEEEECSSCTTBBCCCCCCEEECCBCC
T ss_pred             ceeEEEEecccc--cCEEE--EEEEEcCCCCcccccCCCCEEEEEecc
Confidence            124689999965  99999  89998764   4677787777665544

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.65  E-value=3.4e-16  Score=111.31  Aligned_cols=142  Identities=15%  Similarity=0.201  Sum_probs=93.5

Q ss_pred             eeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEec-CCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTP-VTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      ...|+.+.|.|.+.+ ++  .+.|++++..  +...        ....|.|.+ +..+|+|.|+|.|.|..|....  .+
T Consensus        11 ~~~G~~v~L~C~~~~-~~--~i~W~k~g~~--l~~~--------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~--~~   75 (186)
T 1jbj_A           11 SISGTSVELTCPLDS-DE--NLKWEKNGQE--LPQK--------HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYL--YL   75 (186)
T ss_dssp             EEETTEEEEECSSCC-CT--TCEEEETTEE--ECSC--------CCSEEEEESCCTTTSCEEEEEECSSCCCCCCE--EE
T ss_pred             EeCCcEEEEEEeCCC-CC--ceEEEECCEE--CCCC--------CCCEEEECCCCccccCEEEEEEEEeCCCcEEE--EE
Confidence            367999999999987 33  4999998742  2211        123699999 9999999999999998877443  33


Q ss_pred             EEEeCCCCCCC-------------------C----c--ceE-EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE
Q psy11549        150 QVVLAGKPQPP-------------------Q----N--CSV-RNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV  203 (261)
Q Consensus       150 ~v~~~~~p~~p-------------------~----~--~~v-~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~  203 (261)
                      .+.+...+.+.                   .    .  ..+ ....|+.+.|.|.+      |..-+.|+++.....   
T Consensus        76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~------p~p~i~W~k~g~~i~---  146 (186)
T 1jbj_A           76 KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL------TDKTIKWLKDGSIIS---  146 (186)
T ss_dssp             CCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS------SCSCEEEEETTEECC---
T ss_pred             EEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC------CCCeEEEEECCEECc---
Confidence            33332211111                   0    0  011 11269999999997      222233444432221   


Q ss_pred             EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        204 NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       204 ~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                       ........|.|.++...|.|.|  +|.|.|..|..
T Consensus       147 -~~~~~~~~L~i~~v~~~D~G~Y--~C~a~N~~g~~  179 (186)
T 1jbj_A          147 -PLNATKNTWNLGNNAKDPRGTY--QCQGAKETSNP  179 (186)
T ss_dssp             -CSSCCSSCCEEEETTSCCEEEE--EEEESSCEEEE
T ss_pred             -ccCCCcceEEECCCCcCcCEEE--EEEEEcCcCCc
Confidence             1122457899999999999999  99999999965

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.65  E-value=4.6e-18  Score=136.83  Aligned_cols=210  Identities=12%  Similarity=0.060  Sum_probs=116.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe---------e---ceee-cCceeEEEeeCCCcEEEEEEEeeC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY---------A---PICK-SDRIVIVGASRSESVDIHCAVEAD   86 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~---------~---p~~~-~~~~~~~~~~~g~~~~l~C~~~~~   86 (261)
                      +.|.|.+++.+| |.|+|.|.|..+.. .....+.+..         .   |.+. .++.....+..|+.+.|.|.+.+.
T Consensus       180 s~L~i~~~~~~d-g~Y~C~a~n~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~  257 (434)
T 1igy_B          180 SSVTVPSSPRPS-ETVTCNVAHPASST-KVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDI  257 (434)
T ss_dssp             EEEEEETTTTTS-SCCEEEEECTTTTC-CEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCC
T ss_pred             EEEEEcchhcCC-CcEEEEEEeCCCCc-cceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEecc
Confidence            479999999999 99999999998874 2223332210         0   2221 111100016789999999999987


Q ss_pred             CC---CceeEEEEcCCccccccCCceEE-eC----CceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549         87 PP---ARSFKWKFNNSGETLDVGSERFS-SG----SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus        87 ~~---~~~~~W~~~~~~~~~~~~~~~~~-~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      ++   +..+.|++++.... ........ ..    ...+.|.|.++..+|.|.|+|.|.|..+.......+.+.+ ..+.
T Consensus       258 ~p~P~~~~i~W~k~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~-~~~~  335 (434)
T 1igy_B          258 SKDDPEVQFSWFVDNVEVH-TAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTK-GKPR  335 (434)
T ss_dssp             CSSCCCCCBCBBSSSCCBC-CCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCC-SCCB
T ss_pred             ccCCCCeEEEEEeCCcccC-CcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccC-CCCc
Confidence            42   34799999874211 11000000 01    1134689999999999999999999877543221222210 1122


Q ss_pred             CCCcceEE-----eecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeEEEe--cCCCC------cEEEcCCCCCCcc
Q psy11549        159 PPQNCSVR-----NETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLVNLT--NLDTP------AFTLEDLGLDGTV  224 (261)
Q Consensus       159 ~p~~~~v~-----~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~--~~~~~------~~~i~~~~l~~~~  224 (261)
                      +|.. .+.     ...+..+.|.|.+  .+..|. ..+.|+++...........  ...+.      .+.|.....+++|
T Consensus       336 ~P~v-~~~~~~~~~~~~~~~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g  412 (434)
T 1igy_B          336 APQV-YTIPPPKEQMAKDKVSLTCMI--TDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGN  412 (434)
T ss_dssp             CCCC-EEECCCSSSSSSSEEEEEEEE--EEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTC
T ss_pred             CCEE-EEECCCHHHhcCCcEEEEEEE--EeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCC
Confidence            2221 111     1236679999997  443443 3344455443322111111  11222      2334432234589


Q ss_pred             EEEEEEEEEcCCCc
Q psy11549        225 LMRVVISGVNAKGR  238 (261)
Q Consensus       225 ~Y~~~~~a~N~~G~  238 (261)
                      .|  +|.|.|....
T Consensus       413 ~Y--tC~a~n~~l~  424 (434)
T 1igy_B          413 TF--TCSVLHEGLH  424 (434)
T ss_dssp             CE--EEEEEETTSG
T ss_pred             EE--EEEEEcCCCC
Confidence            99  9999998754

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.65  E-value=8e-15  Score=110.81  Aligned_cols=161  Identities=16%  Similarity=0.174  Sum_probs=97.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEEe--CCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSS--GSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|.+.+.+.+ .+.|++.+.+....           ....++..  ......|.|.++..+|+|.|.|.
T Consensus        22 ~~v~~G~~v~L~C~~~~~p~~-~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  100 (276)
T 3auv_A           22 LSASVGDRVTITCRASQDVST-AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQ  100 (276)
T ss_dssp             EECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEcCCCCEEEEeEcCCCCCC-cEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCChhhCEEEEEE
Confidence            668899999999999988766 89999865321110           01123322  33445799999999999999999


Q ss_pred             EEcCCce-EEeeEEEEEEeCCCCC----------CCCc-----ceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeC-C
Q psy11549        136 AQNAIGT-QVTPCLYQVVLAGKPQ----------PPQN-----CSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSA-S  197 (261)
Q Consensus       136 ~~~~~~~-~~~~~~~~v~~~~~p~----------~p~~-----~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~-~  197 (261)
                      +.+..+. ......  +.|..+|.          +|..     ..+....|+.++|.|.+  .+..| ...+.|++.. +
T Consensus       101 ~~n~~~~~~~~~~~--l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~--~g~~~~~~~v~W~k~~~g  176 (276)
T 3auv_A          101 QHYTTPPTFGCGTK--VEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAA--SGFTISDYWIHWVRQAPG  176 (276)
T ss_dssp             ECSSSSCCCCCCEE--EEC-----------------CCEEEEECCEEECTTCCEEEEEEE--ESSCGGGSEEEEEEECTT
T ss_pred             EecCCcccccCCEE--EEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEe--cCccCCCCEEEEEEcCCC
Confidence            9987543 122223  33333321          1111     12234569999999997  33332 2344455542 1


Q ss_pred             ccc--------------------eeEEEec---CCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        198 DLN--------------------LLVNLTN---LDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       198 ~~~--------------------~~~~~~~---~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      ...                    ..+....   .....|.|.+++.+|+|.|  .|.|.|..
T Consensus       177 ~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~a~n~~  236 (276)
T 3auv_A          177 KCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVY--YCARFVFF  236 (276)
T ss_dssp             CCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE--EEEEECSS
T ss_pred             CCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEE--EEEEEcCc
Confidence            111                    0111110   1223799999999999999  99999984

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.65  E-value=5.4e-15  Score=110.06  Aligned_cols=116  Identities=18%  Similarity=0.237  Sum_probs=80.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec-------------------eeecCceeEEEeeCCCcEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP-------------------ICKSDRIVIVGASRSESVDIHC   81 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p-------------------~~~~~~~~~~~~~~g~~~~l~C   81 (261)
                      +|.|.+++.+|+|.|+|.+.|..+........|.|..++                   .....+.. ..+.+|++++|.|
T Consensus        75 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G~~v~L~C  153 (250)
T 3esu_F           75 SLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGP-ELVKPGASVKISC  153 (250)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCC-EEECTTCCEEEEE
T ss_pred             EEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCc-eEEcCCceEEEEE
Confidence            799999999999999999998766543455677776531                   11111122 5688999999999


Q ss_pred             EEeeCC--CCceeEEEEcCCcccccc----------------CCceEEeC----CceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         82 AVEADP--PARSFKWKFNNSGETLDV----------------GSERFSSG----SRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        82 ~~~~~~--~~~~~~W~~~~~~~~~~~----------------~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      .+.+.+  .+ .+.|+++..+.....                ...++...    .....|.|.++..+|+|.|+|.+.+
T Consensus       154 ~~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          154 KDSGYAFSSS-WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             ECCSTTGGGS-EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EecCCcccCC-EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence            998866  45 899998732211110                01222221    3345799999999999999999997

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.65  E-value=3.7e-15  Score=112.86  Aligned_cols=118  Identities=15%  Similarity=0.226  Sum_probs=81.3

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC--------CCcceeeeEEEEEEe---------------eceeecCceeEEEeeCCCcE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT--------KGEATSNQLKLRVKY---------------APICKSDRIVIVGASRSESV   77 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~--------~~~~~s~~~~l~V~~---------------~p~~~~~~~~~~~~~~g~~~   77 (261)
                      +|.|.+++.+|+|.|+|.+.+.        ..........|.|..               ++.+...+ . ..+.+|+++
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p-~-~~v~~G~~v  157 (280)
T 3fku_X           80 YMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPP-S-VSKGLRQTA  157 (280)
T ss_dssp             EEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCS-E-EEECTTCCE
T ss_pred             EEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCC-c-EEEecCCCE
Confidence            7999999999999999999886        112223345677765               33333333 2 678899999


Q ss_pred             EEEEEEee-CCCCceeEEEEcCCcccccc-----------CCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         78 DIHCAVEA-DPPARSFKWKFNNSGETLDV-----------GSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        78 ~l~C~~~~-~~~~~~~~W~~~~~~~~~~~-----------~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +|.|.+.+ .+....+.|++...+.....           ...++.  .......|.|.++..+|+|.|+|.+.+..
T Consensus       158 ~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          158 TLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             EEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            99999988 44323899997432221110           012222  23345579999999999999999999865

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.65  E-value=3.6e-15  Score=111.47  Aligned_cols=118  Identities=16%  Similarity=0.193  Sum_probs=80.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcc--eeeeEEEEEEeece---------------------eecCceeEEEeeCCCcE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEA--TSNQLKLRVKYAPI---------------------CKSDRIVIVGASRSESV   77 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~--~s~~~~l~V~~~p~---------------------~~~~~~~~~~~~~g~~~   77 (261)
                      +|.|.+++.+|+|.|+|.+.+..+..  ....+.|.|..++.                     +..+. . ..+.+|+++
T Consensus        75 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~G~~v  152 (256)
T 3ux9_B           75 SLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG-G-GLVQPGGSL  152 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC-C-EEECTTCCE
T ss_pred             EEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC-C-eEEcCCCeE
Confidence            79999999999999999999875432  23456788876542                     22211 1 447899999


Q ss_pred             EEEEEEeeCCC-CceeEEEEcCCcccccc----------------CCceEEe----CCceeEEEEecCCCCcCeEEEEEE
Q psy11549         78 DIHCAVEADPP-ARSFKWKFNNSGETLDV----------------GSERFSS----GSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        78 ~l~C~~~~~~~-~~~~~W~~~~~~~~~~~----------------~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      +|.|.+.+.+. ...+.|++...+.....                ...++..    ......|.|.++..+|+|.|+|.+
T Consensus       153 ~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~  232 (256)
T 3ux9_B          153 RLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAR  232 (256)
T ss_dssp             EEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEE
Confidence            99999998662 23899998643221100                0112222    134557999999999999999999


Q ss_pred             EcCC
Q psy11549        137 QNAI  140 (261)
Q Consensus       137 ~~~~  140 (261)
                      .+..
T Consensus       233 ~~~~  236 (256)
T 3ux9_B          233 YIDF  236 (256)
T ss_dssp             EETT
T ss_pred             EcCC
Confidence            9863

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.64  E-value=2.1e-16  Score=114.68  Aligned_cols=125  Identities=18%  Similarity=0.198  Sum_probs=84.3

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC-cceeeeEEEEEE----eeceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRVK----YAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFK   93 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~-~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~   93 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+ ......+.|.|.    .+|.+...... .....|+.+.|.|.+.+.++ ...+.
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~  146 (211)
T 3tv3_L           68 ASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPS-SEELQANKATLVCLISDFYPGAVTVA  146 (211)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCC-HHHHHTTCEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCc-hhhhcCCCeEEEEEeeeecCCCeEEE
Confidence            3799999999999999999999887 333556788887    45544322211 12236999999999998643 34899


Q ss_pred             EEEcCCccccccCCce-EEeCCc----eeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         94 WKFNNSGETLDVGSER-FSSGSR----GSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        94 W~~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      |++++........... ......    .+.|.|..+..+|.|.|+|.|.|..+....
T Consensus       147 W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~  203 (211)
T 3tv3_L          147 WKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK  203 (211)
T ss_dssp             EEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEE
T ss_pred             EEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEe
Confidence            9998742111000000 011111    246888888888999999999998765544

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.64  E-value=1.8e-14  Score=106.78  Aligned_cols=166  Identities=12%  Similarity=0.168  Sum_probs=98.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceEEe--CCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERFSS--GSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|.+.+.+.+ .+.|++...+....  .         ...++..  ......|.|.++..+|+|.|.|.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (242)
T 2znx_A           11 LSVTPGNSVSLSCRASQSIGN-NLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (242)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEcCCCcEEEEEEeCCCCCc-eEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEe
Confidence            668899999999999988766 89999864221110  0         1223322  23455899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEEeCCCCC----------CCCcce----EEeecCCeEEEEeecCCCCCC-CeEEEEEEEeC-Ccc
Q psy11549        136 AQNAIGTQVTPCLYQVVLAGKPQ----------PPQNCS----VRNETTSSVHISCTPGYDGGL-PQTFTLELYSA-SDL  199 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~~~~~p~----------~p~~~~----v~~~~~~~~~l~c~~~~~~~~-p~~~~~~~~~~-~~~  199 (261)
                      +.+..+..... ...+.|..+|.          ++..+.    .....|+.++|.|.+  .+.. +.....|++.. +..
T Consensus        90 ~~n~~~~~~~~-~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~--~g~~~~~~~v~W~k~~~~~~  166 (242)
T 2znx_A           90 QSNSXPYTFGG-GTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSV--TGDSITSDYXSXIRKFPGNR  166 (242)
T ss_dssp             ECSSSSCEECC-CEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEE--ESSCGGGSCEEEEEECTTSC
T ss_pred             EecCCceEECC-CEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEE--EccccCCcceeeEeeCCCCC
Confidence            99875432111 22344444332          111111    123569999999997  2222 12334455532 211


Q ss_pred             c-------------------eeEEEe---cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549        200 N-------------------LLVNLT---NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       200 ~-------------------~~~~~~---~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      .                   ..+...   ......|.|.+++.+|+|.|  .|.|.|..-.+.
T Consensus       167 ~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~~~~~fG~  227 (242)
T 2znx_A          167 LEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATY--YCANXDGDYXGQ  227 (242)
T ss_dssp             EEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEE--EEEETTSSCBCC
T ss_pred             cEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEE--EEeccCCcccCC
Confidence            1                   011111   11224799999999999999  899998644443

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.64  E-value=4.5e-16  Score=114.24  Aligned_cols=135  Identities=14%  Similarity=0.161  Sum_probs=80.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFKW   94 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W   94 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+......+.|.|..    +|.+...... ..+..|+.++|.|.+.+. |.+..+.|
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W  157 (227)
T 1mju_H           79 AYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTW  157 (227)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCC-C------CEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEE
Confidence            48999999999999999999886432222345777764    2333321111 134579999999999986 55558999


Q ss_pred             EEcCCccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCC
Q psy11549         95 KFNNSGETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQP  159 (261)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~  159 (261)
                      ++++......... .....+   ..+.|.|.....+| |.|+|.|.|..+....  ...+.+..+|..
T Consensus       158 ~~~g~~~~~~~~~-~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~--~~~~~~~~~p~~  221 (227)
T 1mju_H          158 NSGSLSSGVHTFP-AVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKV--DKKIEPRGPTIK  221 (227)
T ss_dssp             GGGTBCTTEEECC-CEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEE--EEECCCCCC---
T ss_pred             ecCCCcCCcEECC-ceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcce--EEEeCCCCCCCC
Confidence            9876431111011 111111   23468898888888 9999999997655443  344555555553

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.64  E-value=4.2e-15  Score=110.17  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=80.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece-------------eecCceeEEEeeCCCcEEEEEEEeeCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI-------------CKSDRIVIVGASRSESVDIHCAVEADP   87 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~-------------~~~~~~~~~~~~~g~~~~l~C~~~~~~   87 (261)
                      +|.|.+++.+|+|.|+|.+.|..+......+.|.|..+|.             ....+.. ..+.+|++++|.|.+.+.+
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G~~v~L~C~~~g~~  150 (242)
T 2znx_A           72 TLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGP-SLVKPSQTLSLTCSVTGDS  150 (242)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECC-SEECTTSCEEEEEEEESSC
T ss_pred             EEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCc-ceecCCCeEEEEEEEEccc
Confidence            8999999999999999999887654333456788876553             1111111 3478999999999999876


Q ss_pred             C-CceeEEEEcCCccccc---------------cCCceEEe----CCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         88 P-ARSFKWKFNNSGETLD---------------VGSERFSS----GSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        88 ~-~~~~~W~~~~~~~~~~---------------~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      . ...+.|++...+....               ....++..    ......|.|.++..+|+|.|+|.+.+.
T Consensus       151 ~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~  222 (242)
T 2znx_A          151 ITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG  222 (242)
T ss_dssp             GGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred             cCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence            2 2379999854222110               01223332    233458999999999999999999874

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.64  E-value=1.7e-14  Score=104.77  Aligned_cols=174  Identities=11%  Similarity=0.007  Sum_probs=103.2

Q ss_pred             EEeeCCCcEEEEEEEeeC------CCCceeEEEEcCCccc----c----------ccCCceEEeC----CceeEEEEecC
Q psy11549         69 VGASRSESVDIHCAVEAD------PPARSFKWKFNNSGET----L----------DVGSERFSSG----SRGSMLRYTPV  124 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~------~~~~~~~W~~~~~~~~----~----------~~~~~~~~~~----~~~~~l~i~~~  124 (261)
                      +.+.+|+.++|.|.+...      .+...+.|++.+....    +          .....++...    .....|.|.++
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   89 (214)
T 2zg1_A           10 VTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDA   89 (214)
T ss_dssp             EEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             EEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccC
Confidence            667899999999998854      1334899999764311    0          0111233332    22447999999


Q ss_pred             CCCcCeEEEEEEEcCCceEEe--eEEEEEEeCCCCCCCCcceE-EeecCCeEEEEeecCCC-CCCCeEEEEEEEeCCccc
Q psy11549        125 TELDYGTLSCAAQNAIGTQVT--PCLYQVVLAGKPQPPQNCSV-RNETTSSVHISCTPGYD-GGLPQTFTLELYSASDLN  200 (261)
Q Consensus       125 ~~~d~g~y~C~~~~~~~~~~~--~~~~~v~~~~~p~~p~~~~v-~~~~~~~~~l~c~~~~~-~~~p~~~~~~~~~~~~~~  200 (261)
                      ..+|+|.|.|.+.+..+....  ...+.+.|..+|.+|..... ....|..++|.|.+... .+.|.....|++......
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~  169 (214)
T 2zg1_A           90 RMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPL  169 (214)
T ss_dssp             CGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSS
T ss_pred             CHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccC
Confidence            999999999999987533221  11344555455444332110 12458999999997221 123433334444432211


Q ss_pred             eeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        201 LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       201 ~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      ..   .......+.|..+..+++|.|  +|.|.|..|....+..+.+
T Consensus       170 ~~---~~~~~~~L~i~~~~~~~~g~Y--~C~a~n~~~~~~~~~~v~l  211 (214)
T 2zg1_A          170 DP---ETTRSSELTLTPRPEDHGTNL--TCQMKRQGAQVTTERTVQL  211 (214)
T ss_dssp             CS---SCCCSSEEEECCCTTCCSCEE--EEEEECC----CCEEEEEC
T ss_pred             CC---CceeEEEEEEecccHHcCcEE--EEEEEeCCCCcceEEEEEE
Confidence            00   113457889999888899999  9999998876555555443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.64  E-value=4.8e-16  Score=120.37  Aligned_cols=141  Identities=12%  Similarity=0.157  Sum_probs=83.8

Q ss_pred             CCCCeeccCCCCce-------EEEECCeEEEccCCCCCCEeEEEEEEeCCCcc--eeeeEEE--EEEeeceeecCceeEE
Q psy11549          1 MAGGIPLAHNTSAR-------IILSNQSLVLQKVSRQSAGTYKCSAINTKGEA--TSNQLKL--RVKYAPICKSDRIVIV   69 (261)
Q Consensus         1 ~~ng~~l~~~~~~~-------~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~--~s~~~~l--~V~~~p~~~~~~~~~~   69 (261)
                      +|||++|.......       ...-...|.|.....+|.|.|+|.|.|..+..  ....+.+  .+..+|.+.....   
T Consensus       154 ~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~---  230 (327)
T 2wng_A          154 FKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQ---  230 (327)
T ss_dssp             EETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEE---
T ss_pred             EECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecC---
Confidence            47888885332111       11112357888888888999999999987653  2233333  3445665543222   


Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeC-Cc----eeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSG-SR----GSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      .+.+|+.+.|.|.+.+.++ +..+.|++++....... ...+... ..    .+.|.|..+..+|.|.|+|.|.|..+..
T Consensus       231 ~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~  309 (327)
T 2wng_A          231 PVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTET-ASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA  309 (327)
T ss_dssp             CCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEE-CCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred             CcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcc-cCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence            2679999999999998654 44799999875322111 1111111 11    1458888899999999999999998765


Q ss_pred             Ee
Q psy11549        144 VT  145 (261)
Q Consensus       144 ~~  145 (261)
                      ..
T Consensus       310 ~s  311 (327)
T 2wng_A          310 VS  311 (327)
T ss_dssp             EE
T ss_pred             ch
Confidence            44

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.64  E-value=6.7e-16  Score=115.29  Aligned_cols=119  Identities=20%  Similarity=0.250  Sum_probs=80.3

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe---eceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY---APICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWKF   96 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~   96 (261)
                      +|.|.+++.+|+|.|+|.+.|..+........|.|..   +|.+...... .....|+.++|.|.+.+.++ +..+.|++
T Consensus       114 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k  192 (254)
T 2c1o_A          114 TLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKI  192 (254)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCC-hhhccCCcEEEEEEEecccCCCcEEEEEE
Confidence            8999999999999999999988665433445677753   3444321111 11235789999999988544 34799999


Q ss_pred             cCCccccccC-CceE--EeCC-----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         97 NNSGETLDVG-SERF--SSGS-----RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        97 ~~~~~~~~~~-~~~~--~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ++..  +... ....  ....     ..+.|.|.++..+|+|.|+|.|.|....
T Consensus       193 ~g~~--l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          193 DGSE--RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  244 (254)
T ss_dssp             SSSE--ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCS
T ss_pred             CCCc--ccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCC
Confidence            8752  2111 0111  0111     1357999999999999999999997654

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.64  E-value=4.7e-15  Score=107.67  Aligned_cols=163  Identities=12%  Similarity=0.152  Sum_probs=99.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-----------CCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----------~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|.+.+.+.+ .+.|++...+.....           ...++.  .......|.|.++..+|+|.|+|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L           10 VSVALGQKATITCSGDKLSDV-YVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEETTSCEEEEEECSSTTTS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEeCCCCEEEEEEcCCCCCc-eEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            778899999999999977777 899998432111100           112222  234456799999999999999999


Q ss_pred             EEcCCc---eEEeeEEEEEEeCCCC-CCCCcceEEe-----ecCCeEEEEeecCCCCCCCe-EEEEEEEeCCcccee--E
Q psy11549        136 AQNAIG---TQVTPCLYQVVLAGKP-QPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLL--V  203 (261)
Q Consensus       136 ~~~~~~---~~~~~~~~~v~~~~~p-~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~--~  203 (261)
                      +.+..+   .......  +.|...+ .+|. +.+..     ..|+.++|.|.+  .+..|. ..+.|+++.......  .
T Consensus        89 ~~~~~~~~~~~~~~~~--l~V~~~~~~~P~-i~~~~~~~~~~~g~~v~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~  163 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTK--VTVLGQPNAAPS-VTLFPPSSEELKTNQATLVCMI--NGFYPADVAVTWEADGTPITQGVKT  163 (213)
T ss_dssp             EEETTTTEEEEBCCEE--EEEECSCCBCCE-EEEECCCHHHHTTTEEEEEEEE--EEEBSSCCEEEEEETTEEECTTEEE
T ss_pred             eccCCcceeEEcCceE--EEEeCCCCCCCe-EEccCCCcccccCCcEEEEEEe--eceeCCCeEEEEEcCCcccCCCccc
Confidence            999877   2233333  4443333 2332 22221     258999999997  343333 233344432221100  0


Q ss_pred             --EEecC----CCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        204 --NLTNL----DTPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       204 --~~~~~----~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                        .....    ....+.|..+..+|.|.|  +|.|.|..|..
T Consensus       164 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y--~C~a~n~~~~~  203 (213)
T 3mj8_L          164 TQPSKSDSKYMATSYLTMTADAWKSRNTF--ICKVTHGGNTV  203 (213)
T ss_dssp             CCCEEETTEEEEEEEEEEESHHHHSCSCE--EEEEEETTEEE
T ss_pred             CCcCccCCcEEEEEEEEEeHHHcCCCCEE--EEEEEECCccE
Confidence              00000    013477888777789999  99999998643

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=99.64  E-value=2e-14  Score=111.24  Aligned_cols=160  Identities=15%  Similarity=0.169  Sum_probs=110.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      +.+..|++++|.|.+.+.++...+.|++++...  .....++...+  ..|.|.++...|+|.|+|.+   .|....  .
T Consensus        16 v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~--~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~~---~g~~~~--~   86 (325)
T 1n26_A           16 LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA--GSHPSRWAGMG--RRLLLRSVQLHDSGNYSCYR---AGRPAG--T   86 (325)
T ss_dssp             EEECTTCCEEEECTTSCTTCCSEEEEEEECSSS--SCCCEEEEEES--SEEEECSCCGGGCEEEEEES---SSSCSC--E
T ss_pred             EECCCCCcEEEEeCCCCCCCCceEEEEECCccC--Ccccccccccc--ceEEecccchhhCeEeEEEe---CCEEee--e
Confidence            455799999999999876643489999877432  22222333222  47999999999999999993   454444  4


Q ss_pred             EEEEeCCCCCCCCcceEE-eecCCeEEEEeecCCCCCCCeEEEEEEEeC-CccceeE---E--EecCCCCcEEEcCCCCC
Q psy11549        149 YQVVLAGKPQPPQNCSVR-NETTSSVHISCTPGYDGGLPQTFTLELYSA-SDLNLLV---N--LTNLDTPAFTLEDLGLD  221 (261)
Q Consensus       149 ~~v~~~~~p~~p~~~~v~-~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-~~~~~~~---~--~~~~~~~~~~i~~~~l~  221 (261)
                      ..+.|..+|..|. +... ......+.+.|.++.+++.+..|.+.|+.. +.....+   .  ........+.|..  +.
T Consensus        87 ~~L~V~~pP~~P~-l~c~~~~~~~~~~c~W~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~c~~~~~~~~~~c~i~~--~~  163 (325)
T 1n26_A           87 VHLLVDVPPEEPQ-LSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAV--PE  163 (325)
T ss_dssp             EEEEECCCCCCCC-CEEEBSSTTSCEEEEECCSSCCCTTCEEEEEEEEESSSSCEEEEEEEEEETTTTEEEEEECC--CT
T ss_pred             EEEEeccCCCCCc-eeEEeecCCCcEEEEECCCCCCCCCceEEEEEEEccCCCCCcccccCCCCCCCCCEEEEECC--Cc
Confidence            5566778898887 5554 233668999999877777777788887653 2211121   1  1122335677877  44


Q ss_pred             -CccEEEEEEEEEcCCCcCC
Q psy11549        222 -GTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       222 -~~~~Y~~~~~a~N~~G~~~  240 (261)
                       +...|.|+|.|.|.+|.+.
T Consensus       164 ~~~~~Y~f~v~A~N~~G~~~  183 (325)
T 1n26_A          164 GDSSFYIVSMCVASSVGSKF  183 (325)
T ss_dssp             TCCCEEEEEEEEEETTEEEE
T ss_pred             ccCcEEEEEEEEEcCCCCcc
Confidence             7789999999999999764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.64  E-value=5.3e-15  Score=109.93  Aligned_cols=117  Identities=19%  Similarity=0.248  Sum_probs=80.7

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece--------------eecCceeEEEeeCCCcEEEEEEEeeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI--------------CKSDRIVIVGASRSESVDIHCAVEAD   86 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~--------------~~~~~~~~~~~~~g~~~~l~C~~~~~   86 (261)
                      +|.|.+++.+|+|.|+|.+.|..+......+.|.|..++.              +..+. . ..+..|++++|.|.+.+.
T Consensus        77 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~-~-~~v~~G~~v~L~C~~~~~  154 (247)
T 1svz_A           77 TLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSG-P-ELKKPGETVKISCKATNY  154 (247)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECC-C-EEECTTCCEEEEEEEESS
T ss_pred             EEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCC-c-eeecCCCcEEEEEEEcCc
Confidence            7999999999999999999887654333456788876431              12222 2 348899999999999987


Q ss_pred             C-CCceeEEEEcCCccccc------c----------CCceEEe----CCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         87 P-PARSFKWKFNNSGETLD------V----------GSERFSS----GSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        87 ~-~~~~~~W~~~~~~~~~~------~----------~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      + +...+.|++...+....      .          ...++..    ......|.|.++..+|+|.|+|.+.|.
T Consensus       155 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          155 AFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             CGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred             ccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence            5 22379999864221110      0          0123322    233568999999999999999999984

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.64  E-value=2.6e-15  Score=111.66  Aligned_cols=174  Identities=11%  Similarity=0.058  Sum_probs=98.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCc----eeEEEEcCCcccccc--------------CCceEE---eCCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPPAR----SFKWKFNNSGETLDV--------------GSERFS---SGSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~----~~~W~~~~~~~~~~~--------------~~~~~~---~~~~~~~l~i~~~~~~  127 (261)
                      +.+..|++++|.|.+.+.|++.    .+.|++.+.......              ...++.   .......|.|.++..+
T Consensus        13 ~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~   92 (248)
T 3pv7_A           13 QITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLE   92 (248)
T ss_dssp             EEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCGG
T ss_pred             eEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCHH
Confidence            5678999999999999887652    499998643211000              000000   1123446999999999


Q ss_pred             cCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccc------
Q psy11549        128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLN------  200 (261)
Q Consensus       128 d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~------  200 (261)
                      |+|.|+|.+.+..+.....  +.+.|..+|............+..+.|.|.+  .+..|.. .+.|+++.....      
T Consensus        93 D~G~Y~C~~~~~~~~~~~~--~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~--~g~~P~pi~v~W~k~g~~l~~~~~~~  168 (248)
T 3pv7_A           93 EAGEYRCEVVVTPLKAQGT--VQLEVVASPASRLLLDQVGMKENEDKYMCES--SGFYPEAINITWEKQTQKFPHPIEIS  168 (248)
T ss_dssp             GCEEEEEEEEETTEEEEEE--EEEEEEBCCEEEEECC--------CEEEEEE--EEEBSSCCEEEEEEECSSSCSCEEEC
T ss_pred             HCeEEEEEEEeCCccceeE--EEEEEecCCceEEecCCccccCCCcEEEEEE--ccEECCCeEEEEEECCccCCCccccc
Confidence            9999999999987765553  4444444443111001111346778899997  4434533 344445443110      


Q ss_pred             --ee-EEEecCCC------CcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        201 --LL-VNLTNLDT------PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       201 --~~-~~~~~~~~------~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                        .. ........      ..+.|......++|.|  +|.|.|..+....+..+.+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y--tC~a~n~~~~~~~~~~v~l~  223 (248)
T 3pv7_A          169 EDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVY--QCVVRHASLHTPLRSNFTLT  223 (248)
T ss_dssp             TTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEE--EEEEECTTCSSCEEEEECC-
T ss_pred             cceeecccEECCCCCEEEEEEEEEcCccccCCCEE--EEEEECCCCCCCcEEEEEEE
Confidence              00 01111111      3456666667888999  99999999976665444443

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.64  E-value=7.4e-15  Score=109.74  Aligned_cols=162  Identities=11%  Similarity=0.099  Sum_probs=99.0

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----------------cCCceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----------------VGSERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----------------~~~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +.+.+|++++|.|.+.+.+ +...+.|++...+....                ....++..    ......|.|.++..+
T Consensus        10 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (256)
T 1nqb_A           10 ELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSE   89 (256)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCChh
Confidence            5678999999999998875 22379999853221110                01123332    234568999999999


Q ss_pred             cCeEEEEEEEcCCce---EEeeEEEEEEeCCCCC---CCCcceEEeecCCeEEEEeecCCCCCCCe----EEEEEEEe-C
Q psy11549        128 DYGTLSCAAQNAIGT---QVTPCLYQVVLAGKPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQ----TFTLELYS-A  196 (261)
Q Consensus       128 d~g~y~C~~~~~~~~---~~~~~~~~v~~~~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~----~~~~~~~~-~  196 (261)
                      |+|.|+|.+.+..|.   ......+.+.|..+|.   .|..  +....|+.++|.|.+  .+..+.    ..+.|++. .
T Consensus        90 DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~--~~v~~G~~v~L~C~~--~~~~~~~~~~~~v~W~k~~~  165 (256)
T 1nqb_A           90 DSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLS--LPVSLGDQASISCRS--SQSIVHSNGNTYLEWYLQKP  165 (256)
T ss_dssp             GCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSE--EEECTTCCEEEEEEE--SSCCBCTTSCBCEEEEEECT
T ss_pred             hCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcE--EEEecCCcEEEEeEe--cCcccccccceEEEEEEECC
Confidence            999999999997552   1111123444544443   2333  334569999999997  333332    23445553 2


Q ss_pred             Cccce---------------eEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        197 SDLNL---------------LVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       197 ~~~~~---------------~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      +....               .+.. .......|.|.+++.+|.|.|  .|.|.|..
T Consensus       166 g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~a~~~~  219 (256)
T 1nqb_A          166 GQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVY--YCFQGSHV  219 (256)
T ss_dssp             TSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE--EEEECSSS
T ss_pred             CCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEE--EEEEccCC
Confidence            22110               1111 112234689999999999999  88898843

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.64  E-value=1.9e-14  Score=107.65  Aligned_cols=163  Identities=14%  Similarity=0.111  Sum_probs=97.4

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCcccccc---------------CCceEEe----CCceeEEEEecCCCCc
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLDV---------------GSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~---------------~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      ..+.+|+.++|.|.+.+.+ +...+.|++...+.....               ...++..    ......|.|.++..+|
T Consensus        10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (257)
T 1f3r_B           10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (257)
T ss_dssp             SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred             ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence            3477999999999999875 233899998632111100               1223332    2345689999999999


Q ss_pred             CeEEEEEEEcCCc-------eEEeeEEEEEEeCCCCC------------CCC----cceEEeecCCeEEEEeecCCCCCC
Q psy11549        129 YGTLSCAAQNAIG-------TQVTPCLYQVVLAGKPQ------------PPQ----NCSVRNETTSSVHISCTPGYDGGL  185 (261)
Q Consensus       129 ~g~y~C~~~~~~~-------~~~~~~~~~v~~~~~p~------------~p~----~~~v~~~~~~~~~l~c~~~~~~~~  185 (261)
                      +|.|+|.+.+..|       .........+.|...|.            ++.    ...+....|+.++|.|.+  .+..
T Consensus        90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~--~~~~  167 (257)
T 1f3r_B           90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKG--SQNI  167 (257)
T ss_dssp             CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEEC--SSCC
T ss_pred             CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEE--CCcC
Confidence            9999999999753       11111122344443321            111    112334569999999997  3333


Q ss_pred             CeEEEEEEEeC-Cccce---------------eEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        186 PQTFTLELYSA-SDLNL---------------LVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       186 p~~~~~~~~~~-~~~~~---------------~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      +. ...|++.. +....               .+.. .......|+|.+++.+|.|.|  .|.|.|..
T Consensus       168 ~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~n~~  232 (257)
T 1f3r_B          168 NN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATY--FCYQYNNG  232 (257)
T ss_dssp             BT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEE--EEEEESSS
T ss_pred             CC-cEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEE--EEEEeCCC
Confidence            33 44555532 22110               1111 111234789999999999999  99999964

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.63  E-value=2.7e-14  Score=105.43  Aligned_cols=159  Identities=11%  Similarity=0.121  Sum_probs=93.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc--------------ccCCceEEe---CCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL--------------DVGSERFSS---GSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~--------------~~~~~~~~~---~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|++++|.|. .+.+.+ .+.|++...+...              .....++..   ......|.|.++..+|+|.
T Consensus        10 ~~v~~G~~v~L~C~-~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~   87 (238)
T 2p1y_A           10 KVAVTGGKVTLSCN-QTNNHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSV   87 (238)
T ss_dssp             EEEETTCCEEEEEE-ECSCCS-EEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEE
T ss_pred             eEEeCCCEEEEEee-cCCCCc-cEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCee
Confidence            66889999999999 666666 8999985321110              001122222   2234579999999999999


Q ss_pred             EEEEEEcCCceE-----EeeEEEEEEeCCC---C-------C---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEE
Q psy11549        132 LSCAAQNAIGTQ-----VTPCLYQVVLAGK---P-------Q---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLEL  193 (261)
Q Consensus       132 y~C~~~~~~~~~-----~~~~~~~v~~~~~---p-------~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~  193 (261)
                      |+|.+.+..+..     .....+.+....+   |       .   .|..  +....|+.++|.|.+  . +.|...+.|+
T Consensus        88 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~--~~v~~G~~v~L~C~~--~-~~p~~~i~W~  162 (238)
T 2p1y_A           88 YFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQS--LTVWEGETAILNCSY--E-NSAFDYFPWY  162 (238)
T ss_dssp             EEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSE--EEEETTSCEEEEEEC--C-CTTCCEEEEE
T ss_pred             EEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCce--EEEeCCCeEEEEEEE--e-cCCCCcEEEE
Confidence            999999875421     1222333332111   0       1   1222  334569999999997  3 3333344455


Q ss_pred             EeC-Cccce---------------eEEEe---cCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        194 YSA-SDLNL---------------LVNLT---NLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       194 ~~~-~~~~~---------------~~~~~---~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      +.. +....               .+...   ......|.|.+++.+|+|.|  +|.|.|..
T Consensus       163 k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~n~~  222 (238)
T 2p1y_A          163 QQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATY--FCAAIDTN  222 (238)
T ss_dssp             EECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEE--EEEEEETT
T ss_pred             EECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEE--EEEEeeCC
Confidence            542 11110               11111   11235799999999999999  99999973

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=2.8e-14  Score=106.00  Aligned_cols=162  Identities=10%  Similarity=0.084  Sum_probs=97.7

Q ss_pred             EEeeCCCcEEEEEEEeeCC--CCceeEEEEcCCccccc----------------cCCceEEe----CCceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVEADP--PARSFKWKFNNSGETLD----------------VGSERFSS----GSRGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~~----------------~~~~~~~~----~~~~~~l~i~~~~~  126 (261)
                      +.+.+|+.++|.|.+.+.|  .+ .+.|++...+....                ....++..    ......|.|.++..
T Consensus        12 ~~v~~G~~v~L~C~~~g~p~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (247)
T 2ghw_B           12 GVVQPGKSLRLSCAASGFAFSSY-AMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   90 (247)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             EEEecCCcEEEEEEeccccCCCc-eEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence            5678999999999999876  34 79999854221110                01123332    23456799999999


Q ss_pred             CcCeEEEEEEEcCCceEEeeEEEEEEeCCCC------------CCCCc----ceEEeecCCeEEEEeecCCCCCCCeEEE
Q psy11549        127 LDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP------------QPPQN----CSVRNETTSSVHISCTPGYDGGLPQTFT  190 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p------------~~p~~----~~v~~~~~~~~~l~c~~~~~~~~p~~~~  190 (261)
                      +|+|.|+|.+.+..+.........+.|..+|            .++..    ..+....|+.++|.|.+  .+..+.. +
T Consensus        91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~--~~~~~~~-v  167 (247)
T 2ghw_B           91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRA--SQSVRSN-L  167 (247)
T ss_dssp             GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEE--SSCCTTC-E
T ss_pred             HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEe--CCCccce-E
Confidence            9999999999987332221112234444332            11111    12334579999999997  3333333 4


Q ss_pred             EEEEe-CCccce---------------eEEEe-cCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        191 LELYS-ASDLNL---------------LVNLT-NLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       191 ~~~~~-~~~~~~---------------~~~~~-~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      .|++. .+....               .+... ......|+|.+++.+|.|.|  .|.|.|..
T Consensus       168 ~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~~~~  228 (247)
T 2ghw_B          168 AWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVY--YCQQRSNW  228 (247)
T ss_dssp             EEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEE--EEEECSSS
T ss_pred             EEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEE--EEEEccCC
Confidence            44442 222110               11111 11224589999999999999  88998853

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=7.9e-15  Score=108.47  Aligned_cols=117  Identities=18%  Similarity=0.210  Sum_probs=82.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece------eecCceeEEEeeCCCcEEEEEEEeeCCC-CceeE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI------CKSDRIVIVGASRSESVDIHCAVEADPP-ARSFK   93 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~------~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~   93 (261)
                      +|.|.+++.+|+|.|+|.+.|..+......+.|.|..++.      ....+.. ..+..|++++|.|.+.+.|. +..+.
T Consensus        76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~-~~v~~G~~v~L~C~~~g~p~~~~~v~  154 (240)
T 1moe_A           76 TLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGA-ELVEPGASVKLSCTASGFNIKDTYMH  154 (240)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCC-EEECTTCCEEEEEEEESSCGGGSCEE
T ss_pred             EEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCc-eEEeCCCcEEEEEEEcCccCCCCEEE
Confidence            7999999999999999999988665334557888876432      1111222 56889999999999998874 23799


Q ss_pred             EEEcCCccccc----------------cCCceEEeC----CceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         94 WKFNNSGETLD----------------VGSERFSSG----SRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        94 W~~~~~~~~~~----------------~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |+++..+....                ....++...    .....|.|.++..+|+|.|+|.|..
T Consensus       155 W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          155 WVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            99863211110                011223221    3446799999999999999999984

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.63  E-value=6e-15  Score=104.15  Aligned_cols=158  Identities=11%  Similarity=0.100  Sum_probs=99.7

Q ss_pred             EEeeCCCcEEEEEEEee--CCCCceeEEEE--cCCccccc-------cCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         69 VGASRSESVDIHCAVEA--DPPARSFKWKF--NNSGETLD-------VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~--~~~~~~~~W~~--~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +....|++++|.|....  .+.+ .|.|++  ++......       ....++..... .+|.|.++..+|+|.|+|.+.
T Consensus         9 v~g~~G~sv~L~~~~~~~~~~~~-~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~n-gsL~I~~v~~~DsG~Y~c~~~   86 (182)
T 1hnf_A            9 TWGALGQDINLDIPSFQMSDDID-DIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN-GTLKIKHLKTDDQDIYKVSIY   86 (182)
T ss_dssp             EEEETTSCEEECCTTCCCCSSEE-EEEEEEGGGCCEEEEECGGGCEEESCTTEEECTT-SCEEECSCCGGGCEEEEEEEE
T ss_pred             EEEecCCCEEEeCCcccccCcCC-EEEEEECCCCcEEEEEeCccCCCCCCCeEEECCC-CCEEECCCChhhCEEEEEEEE
Confidence            66779999999995422  2234 899999  65321000       12233333322 279999999999999999999


Q ss_pred             cCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcC
Q psy11549        138 NAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLED  217 (261)
Q Consensus       138 ~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  217 (261)
                      +..|.......+.+.|..++..|.. ..   .+..+.|.|.+  .++.++.|.|+ ++....    . .  ....+.+..
T Consensus        87 n~~g~~~~~~~~~L~V~~~~~~P~i-~~---~~~~v~L~C~~--~~~p~~~~~W~-~~g~~l----~-~--~~~~i~~~~  152 (182)
T 1hnf_A           87 DTKGKNVLEKIFDLKIQERVSKPKI-SW---TCINTTLTCEV--MNGTDPELNLY-QDGKHL----K-L--SQRVITHKW  152 (182)
T ss_dssp             ETTSCEEEEEEEEEEEECCCCCCEE-EE---ETTTTEEEEEC--SSCSSCEEEEE-ESSCEE----E-E--ESSCEEEEC
T ss_pred             eCCCceeEEEEEEEEEcCcCCCCEE-EE---ccCcEEEEeEc--cCCCCCEEEEE-ECCEEC----C-C--CCcEEEEec
Confidence            9877665444566666655555532 22   24579999997  44445566654 332221    0 1  112333332


Q ss_pred             CCCCCccEEEEEEEEEcCCCcCCceeee
Q psy11549        218 LGLDGTVLMRVVISGVNAKGRSLPVIWD  245 (261)
Q Consensus       218 ~~l~~~~~Y~~~~~a~N~~G~~~~s~~~  245 (261)
                       ...+.|.|  +|.|.|++|....+..+
T Consensus       153 -~~~d~G~Y--~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          153 -TTSLSAKF--KCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             -CSCEEEEE--EEEEECSSCEEEEEEEE
T ss_pred             -ccCCCcEE--EEEEEeCCCCcEEccee
Confidence             36889999  99999999977665554

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.63  E-value=8.3e-15  Score=111.08  Aligned_cols=118  Identities=19%  Similarity=0.257  Sum_probs=82.0

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCc----ceeeeEEEEEEeece---------------eecCceeEEEeeCCCcEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGE----ATSNQLKLRVKYAPI---------------CKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~----~~s~~~~l~V~~~p~---------------~~~~~~~~~~~~~g~~~~l~   80 (261)
                      .+|.|.+++.+|+|.|+|.+.|..|.    .....+.|.|...|.               +...+. .+.+.+|++++|.
T Consensus       105 ~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~v~~G~~v~L~  183 (282)
T 1qok_A          105 AYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPA-IMSASPGEKVTIT  183 (282)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECS-EEEECTTCCEEEE
T ss_pred             EEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCC-EEEEcCCCcEEEE
Confidence            48999999999999999999998751    112345788876541               121222 2568899999999


Q ss_pred             EEEeeCCCCceeEEEEc--CCccccc---------cCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         81 CAVEADPPARSFKWKFN--NSGETLD---------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        81 C~~~~~~~~~~~~W~~~--~~~~~~~---------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      |.+.+.+ + .+.|++.  +......         ....++.  .......|.|.++..+|+|.|+|.+.+..
T Consensus       184 C~~~~~~-~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  254 (282)
T 1qok_A          184 CSASSSV-S-YMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSY  254 (282)
T ss_dssp             EEESSCC-S-CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSS
T ss_pred             EEecCCC-c-eEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCC
Confidence            9999888 6 8999993  3321100         0112332  23345579999999999999999998753

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.63  E-value=5.2e-15  Score=104.48  Aligned_cols=154  Identities=13%  Similarity=0.136  Sum_probs=97.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---------c-CC--ceEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---------V-GS--ERFSSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~-~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      +.+.+|++++|.|.+....+...+.|++.+......         . ..  .++.......+|.|.++..+|+|.|+|.+
T Consensus         9 v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~v   88 (180)
T 2dru_A            9 VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRM   88 (180)
T ss_dssp             EEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEEE
T ss_pred             EEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEEE
Confidence            667899999999998543223389999842111110         0 11  34444334457999999999999999999


Q ss_pred             EcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEc
Q psy11549        137 QNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLE  216 (261)
Q Consensus       137 ~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  216 (261)
                      .+.. ...  ..+.+.|..++..|.. .+   .+..++|.|.+  ..+.++.+.| ++......      ......+.+.
T Consensus        89 ~~~~-~~~--~~~~L~V~~~~~~P~i-~~---~~~~v~L~C~~--~~gp~p~i~W-~~~~~~l~------~~~~~~l~~~  152 (180)
T 2dru_A           89 LHET-EDQ--WKITMEVYEMVSKPMI-YW---ECSNATLTCEV--LEGTDVELKL-YQGKEHLR------SLRQKTMSYQ  152 (180)
T ss_dssp             ESSS-EEE--EEEEEEEECCCCCCEE-EE---EGGGTEEEEEC--SSCTTCEEEE-EETTEEEE------EESSSEEEEE
T ss_pred             EcCC-eEE--EEEEEEEECCCCCCEE-Ee---cCCCEEEEEEe--CCCCCCEEEE-EECCeECc------CCCCCEEEEE
Confidence            8765 333  3556666566555542 22   24669999997  3443344544 44432221      1123455564


Q ss_pred             CCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549        217 DLGLDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       217 ~~~l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      .  ..+.|.|  +|.|.|.+|....+
T Consensus       153 ~--~~d~g~Y--~C~a~N~~~~~~~~  174 (180)
T 2dru_A          153 W--TNLRAPF--KCKAVNRVSQESEM  174 (180)
T ss_dssp             C--SCCSSCE--EEEEEETTEEEEEE
T ss_pred             E--hhcCccE--EEEEecCcCccccc
Confidence            4  6789999  99999999866443

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.63  E-value=4.5e-14  Score=105.04  Aligned_cols=157  Identities=17%  Similarity=0.194  Sum_probs=95.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|+.++|.|.+.+.+.+ .+.|++...+....           ....++.  .......|.|.++..+|+|.|+|.
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~~-~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   92 (250)
T 3esu_F           14 LSASLGDRVTISCRASQDIRN-YLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQ   92 (250)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEeeCCCcEEEEEEecccCCc-eEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEE
Confidence            667899999999999998888 89999854221110           0112222  233445799999999999999999


Q ss_pred             EEcCCceEE-eeEEEEEEeCCCC--------------------C--CCCcceEEeecCCeEEEEeecCCCCCC-CeEEEE
Q psy11549        136 AQNAIGTQV-TPCLYQVVLAGKP--------------------Q--PPQNCSVRNETTSSVHISCTPGYDGGL-PQTFTL  191 (261)
Q Consensus       136 ~~~~~~~~~-~~~~~~v~~~~~p--------------------~--~p~~~~v~~~~~~~~~l~c~~~~~~~~-p~~~~~  191 (261)
                      +.+..+... ....+.|.  .+|                    .  .|..  +....|+.++|.|.+  .+.. +...+.
T Consensus        93 ~~n~~~~~~~~~~~l~V~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~G~~v~L~C~~--~~~~~~~~~v~  166 (250)
T 3esu_F           93 QGNTLPWTFGGGTKLEIR--RGGGGSGGGGSGGGGSGGGGSEVQLQQSGP--ELVKPGASVKISCKD--SGYAFSSSWMN  166 (250)
T ss_dssp             ECSSSSCEECCCEEEEEC--------------------------CEECCC--EEECTTCCEEEEEEC--CSTTGGGSEEE
T ss_pred             EeeCCCceECCCEEEEEE--CCCCcccccccccccccCcccceEEecCCc--eEEcCCceEEEEEEe--cCCcccCCEEE
Confidence            998755422 22233332  221                    1  1222  334579999999997  2222 133445


Q ss_pred             EEEeC-CccceeE-EEe----------------------cCCCCcEEEcCCCCCCccEEEEEEEEEc
Q psy11549        192 ELYSA-SDLNLLV-NLT----------------------NLDTPAFTLEDLGLDGTVLMRVVISGVN  234 (261)
Q Consensus       192 ~~~~~-~~~~~~~-~~~----------------------~~~~~~~~i~~~~l~~~~~Y~~~~~a~N  234 (261)
                      |++.. +...... ...                      ......|.|.+++.+|.|.|  .|.|.|
T Consensus       167 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~~~~  231 (250)
T 3esu_F          167 WVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVY--FCARSG  231 (250)
T ss_dssp             EEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEE--EEEEEC
T ss_pred             EEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEE--EEEEec
Confidence            55542 2111010 000                      01223699999999999999  888987

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.63  E-value=5.4e-16  Score=114.47  Aligned_cols=122  Identities=16%  Similarity=0.163  Sum_probs=79.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe---eceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY---APICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWK   95 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~   95 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+......+.|.|..   +|.+...... .....|+.++|.|.+.+.++ ...+.|+
T Consensus        94 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~v~l~C~~~~~~p~~~~v~W~  172 (237)
T 3sob_L           94 FTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPS-DEQLKSGTASVVCLLNNFYPREAKVQWK  172 (237)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCC-HHHHHHTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCC-hhhccCCceEEEEEEcccCCCceEEEEE
Confidence            47999999999999999999887764434456677743   3333211111 11335889999999998544 3489999


Q ss_pred             EcCCcccccc-CCceEEe-CC----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         96 FNNSGETLDV-GSERFSS-GS----RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        96 ~~~~~~~~~~-~~~~~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      +++....... ....... .+    ..+.|.|.....+|.|.|+|.|.|....
T Consensus       173 k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          173 VDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             ETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             ECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence            9874321100 0000011 11    1346888888889999999999997643

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.63  E-value=1.9e-14  Score=107.74  Aligned_cols=160  Identities=13%  Similarity=0.188  Sum_probs=91.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c--C-------------CceEE---eCCceeEEEEecCCCCc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V--G-------------SERFS---SGSRGSMLRYTPVTELD  128 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~--~-------------~~~~~---~~~~~~~l~i~~~~~~d  128 (261)
                      +.+.+|++++|.|.+.+.+.+ .+.|++...+....  .  .             ..++.   .......|.|.++..+|
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   90 (259)
T 3omz_A           12 VIRQTGSSAEITCDLAEGSTG-YIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRNLIEND   90 (259)
T ss_dssp             EEEETTCCEEEECCC-----C-EEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESSCCGGG
T ss_pred             eEecCCCcEEEEEEEccCCCc-EEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECCCCccc
Confidence            678899999999999988866 89999842211110  0  0             01111   12234579999999999


Q ss_pred             CeEEEEEEEcCCc---eEEeeEEEEEEeCC-C--------------C---CCCCcceEEeecCCeEEEEeecCCCCCCCe
Q psy11549        129 YGTLSCAAQNAIG---TQVTPCLYQVVLAG-K--------------P---QPPQNCSVRNETTSSVHISCTPGYDGGLPQ  187 (261)
Q Consensus       129 ~g~y~C~~~~~~~---~~~~~~~~~v~~~~-~--------------p---~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~  187 (261)
                      +|.|.|.+.+..+   .......+.|.... .              |   ..|..  +....|+.++|.|..  .+..|.
T Consensus        91 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~--~~v~~G~~v~L~C~~--~~~~~~  166 (259)
T 3omz_A           91 SGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSS--VSMPVRKAVTLNCLY--ETSWWS  166 (259)
T ss_dssp             CEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCC--EEEETTCCEEECCEE--ECCCSS
T ss_pred             CEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCE--EEEcCCCCEEEEEEC--CCccCC
Confidence            9999999998755   22233344444321 0              1   12222  333569999999986  333344


Q ss_pred             EEEEEEEeCCccceeE----------------EE---ecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        188 TFTLELYSASDLNLLV----------------NL---TNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       188 ~~~~~~~~~~~~~~~~----------------~~---~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      ....|++........+                ..   .......|.|.+++.+|+|.|  .|.+.+.
T Consensus       167 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~~~~~  231 (259)
T 3omz_A          167 YYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKY--FCALGES  231 (259)
T ss_dssp             CEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEE--EEEEESC
T ss_pred             ceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEE--EEEEeCc
Confidence            4445555432211111                00   011235699999999999999  7777653

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.63  E-value=4.3e-15  Score=111.03  Aligned_cols=120  Identities=16%  Similarity=0.232  Sum_probs=82.6

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcc---eeeeEEEEEEe--------------------eceeecCceeEEEeeCCCcE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEA---TSNQLKLRVKY--------------------APICKSDRIVIVGASRSESV   77 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~---~s~~~~l~V~~--------------------~p~~~~~~~~~~~~~~g~~~   77 (261)
                      +|.|.+++.+|+|.|+|.+.|..+..   ....+.|.|..                    +|.+...+.. ..+.+|+++
T Consensus        77 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~-~~v~~G~~v  155 (256)
T 3tf7_C           77 HLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRN-KVTVTGENV  155 (256)
T ss_dssp             EEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSE-EEEETTCCE
T ss_pred             EEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCE-EEEeCCCcE
Confidence            79999999999999999999876421   12345677764                    3334433333 567799999


Q ss_pred             EEEEEEeeCCCCceeEEEEcCCcccccc--------------CCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         78 DIHCAVEADPPARSFKWKFNNSGETLDV--------------GSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        78 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~--------------~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +|.|.+.+. .+ .+.|++...+.....              ...++..   ......|.|.++..+|+|.|+|.|.|..
T Consensus       156 ~L~C~~~~~-~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~  233 (256)
T 3tf7_C          156 TLSCRQTNS-HN-YMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAP  233 (256)
T ss_dssp             EECEEECSC-CS-EEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEET
T ss_pred             EEEEEcCCC-ce-EEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCC
Confidence            999999876 44 899998442211100              0111111   2334579999999999999999999876


Q ss_pred             ceE
Q psy11549        141 GTQ  143 (261)
Q Consensus       141 ~~~  143 (261)
                      |..
T Consensus       234 g~~  236 (256)
T 3tf7_C          234 GQL  236 (256)
T ss_dssp             TEE
T ss_pred             Ccc
Confidence            543

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.63  E-value=4.4e-15  Score=106.16  Aligned_cols=154  Identities=15%  Similarity=0.176  Sum_probs=95.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc-ccC----------C----ceEEeCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL-DVG----------S----ERFSSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-~~~----------~----~~~~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+..|++++|.|.+.+.++...+.|++++..... ...          .    .++.... ...|.|.++..+|+|.|+
T Consensus         8 v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~-~~sL~I~~v~~~D~G~Y~   86 (193)
T 2if7_A            8 VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ-SYSLQLSNLKMEDTGSYR   86 (193)
T ss_dssp             EEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECT-TCCEEECSCCGGGCEEEE
T ss_pred             EEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECC-CeEEEECCCCcccCceEE
Confidence            67789999999999876444338999997532110 000          0    1223332 457999999999999999


Q ss_pred             EEEEcCCceEEeeEEEEEEeCCCCCCCCcceEE---eecCC-eEEEEeecCCCCCCC-eEEEEEEEeCCccceeEEEecC
Q psy11549        134 CAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVR---NETTS-SVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNL  208 (261)
Q Consensus       134 C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~---~~~~~-~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~  208 (261)
                      |.+.+..+....  .+.+.|..+|..|.. ...   ...+. .++|.|.+  .+..| +.+.|. +.....      .  
T Consensus        87 C~~~~~~~~~~~--~~~L~V~~~~~~p~i-~~~~~~~~~g~~~v~L~C~~--~g~~p~p~i~W~-~~g~~l------~--  152 (193)
T 2if7_A           87 AQISTKTSAKLS--SYTLRILRQLRNIQV-TNHSQLFQNMTCELHLTCSV--EDADDNVSFRWE-ALGNTL------S--  152 (193)
T ss_dssp             EEEECSSCEEEE--EEEEEEECCCEEEEE-EECCC---CSSEEEEEEEEE--ESCCTTCEEEEE-ETTEEE------E--
T ss_pred             EEEEecCCCeEE--EEEEEEEccCCCCeE-ecCceeecCCCceEEEEEEE--ecCCCceEEEEE-eCCEEc------C--
Confidence            999998776554  445555444433321 111   12344 79999997  44343 445444 332111      1  


Q ss_pred             CCCcEEEcCCCCC-CccEEEEEEEEEcCCCcC
Q psy11549        209 DTPAFTLEDLGLD-GTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       209 ~~~~~~i~~~~l~-~~~~Y~~~~~a~N~~G~~  239 (261)
                      ....+.|...... +.|.|  +|.|.|.+|..
T Consensus       153 ~~~~l~i~~~~~~~d~G~Y--~C~a~N~~g~~  182 (193)
T 2if7_A          153 SQPNLTVSWDPRISSEQDY--TCIAENAVSNL  182 (193)
T ss_dssp             SSSEEEEEECTTTCSCCEE--EEEEEETTEEE
T ss_pred             CCCeEEEEeccCcCCCCcE--EEEEECCCCcc
Confidence            2245666432233 79999  99999999976

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.63  E-value=1.1e-15  Score=111.06  Aligned_cols=118  Identities=17%  Similarity=0.201  Sum_probs=79.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE---EeeceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV---KYAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWKF   96 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V---~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~   96 (261)
                      +|.|.+++.+|+|.|+|.+.|..+......+.|.|   ..+|.+...... .....|+.++|.|.+.+.++ +..+.|++
T Consensus        72 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~~~~v~l~C~~~g~~p~~~~v~W~k  150 (213)
T 3r06_A           72 SFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPS-SEQLGTGSATLVCFVNNFYPKDINVKWKV  150 (213)
T ss_dssp             EEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHTTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             EEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCC-ceecCCCCcEEEEEEeeecCCceEEEEEE
Confidence            89999999999999999998876554455567777   344544322211 22346888999999998654 45899999


Q ss_pred             cCCccccccCC-ce--EEeCC-----ceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         97 NNSGETLDVGS-ER--FSSGS-----RGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        97 ~~~~~~~~~~~-~~--~~~~~-----~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ++..  +.... ..  .....     ..+.|.|.....+|.|.|+|.|.|...
T Consensus       151 ~g~~--l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~  201 (213)
T 3r06_A          151 DGSE--KRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS  201 (213)
T ss_dssp             TTEE--ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred             CCcc--cCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence            8742  21110 00  11111     123577888888889999999999753

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.63  E-value=5.3e-16  Score=113.06  Aligned_cols=125  Identities=16%  Similarity=0.219  Sum_probs=79.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC----cceeeeEEEEEE----eeceeecCceeEEEeeCCCcEEEEEEEeeC-CCCc
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG----EATSNQLKLRVK----YAPICKSDRIVIVGASRSESVDIHCAVEAD-PPAR   90 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~----~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~   90 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+    ......+.|.|.    .+|.+...... .....|+.++|.|.+.+. |.+.
T Consensus        75 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~-~~~~~~~~v~L~C~~~g~~p~~~  153 (218)
T 3s96_B           75 RYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPS-SEELKENKATLVCLISNFSPSGV  153 (218)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCC
T ss_pred             EEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCC-cccccCCcEEEEEEECcccCCCe
Confidence            3799999999999999999998876    122445678887    33443321111 123457899999999984 4444


Q ss_pred             eeEEEEcCCccccccCCceEEe-CCc---eeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         91 SFKWKFNNSGETLDVGSERFSS-GSR---GSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        91 ~~~W~~~~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .+.|++++.............. .+.   .+.|.|.....+|.|.|+|.|.|..+....
T Consensus       154 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~  212 (218)
T 3s96_B          154 TVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEK  212 (218)
T ss_dssp             EEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEE
T ss_pred             EEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccc
Confidence            8999997742211000000000 111   234778888788899999999998765544

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.62  E-value=1.8e-14  Score=91.38  Aligned_cols=92  Identities=13%  Similarity=0.227  Sum_probs=69.7

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCce--EEeCCceeEEEEecCCCCcCeEEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER--FSSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      .||.+...+.. +.+.+|+.+.|.|.+.+.|.| .+.|++++.... .....+  +...+....|.|.++..+|+|.|+|
T Consensus         4 ~PP~i~~~p~~-~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~~i~-~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   80 (100)
T 3knb_A            4 IPPKIEALPSD-ISIDEGKVLTVACAFTGEPTP-EVTWSCGGRKIH-SQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTL   80 (100)
T ss_dssp             EEEEECCCCSE-EEEETTSEEEEEEEEEEESCC-EEEEEETTEECC-TTGGGTEEEEECSSEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEeCCCc-EEEeCCCeEEEEEEEEEecCC-EEEEEECceEee-eeccceeeeecccceEEEEEcCCCccCCEEEEE
Confidence            35666655544 778999999999999999998 899999874322 122223  3345556789999999999999999


Q ss_pred             EEEcCCceEEeeEEEEE
Q psy11549        135 AAQNAIGTQVTPCLYQV  151 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~v  151 (261)
                      .|.|..|.......+.|
T Consensus        81 ~a~N~~G~~~~~~~l~V   97 (100)
T 3knb_A           81 SLGNEFGSDSATVNIHI   97 (100)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999998777544444

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.62  E-value=5.7e-15  Score=110.56  Aligned_cols=118  Identities=15%  Similarity=0.208  Sum_probs=82.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCc--ceeeeEEEEEEee-----------------ceeecCceeEEEeeCCCcEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGE--ATSNQLKLRVKYA-----------------PICKSDRIVIVGASRSESVDIH   80 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~--~~s~~~~l~V~~~-----------------p~~~~~~~~~~~~~~g~~~~l~   80 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+.  .....+.|.|...                 |.+...+.. +.+.+|++++|.
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~-~~v~~G~~v~L~  157 (259)
T 3omz_A           79 LRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSS-VSMPVRKAVTLN  157 (259)
T ss_dssp             CEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCC-EEEETTCCEEEC
T ss_pred             EEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCE-EEEcCCCCEEEE
Confidence            47999999999999999999987652  2244567777753                 333333333 678899999999


Q ss_pred             EEEeeCCCCceeEEEEcCCcccccc-----------CCceEEeC----CceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         81 CAVEADPPARSFKWKFNNSGETLDV-----------GSERFSSG----SRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        81 C~~~~~~~~~~~~W~~~~~~~~~~~-----------~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+.+..+...+.|++...+.....           ...++...    .....|.|.++..+|+|.|+|.+..
T Consensus       158 C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~  230 (259)
T 3omz_A          158 CLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE  230 (259)
T ss_dssp             CEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred             EECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence            9988753333899998543221110           01223222    2345699999999999999999975

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.62  E-value=1.2e-14  Score=105.26  Aligned_cols=164  Identities=15%  Similarity=0.162  Sum_probs=99.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc-----------ccCCceEEe--CCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL-----------DVGSERFSS--GSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-----------~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|+.++|.|.+.+.+.+ .+.|++...+...           .....++..  ......|.|.++..+|+|.|+|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (210)
T 1lk3_L           10 LTVSPGEKLTISCKASESVTS-RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (210)
T ss_dssp             EEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEcCCCCEEEEeeCCCccCC-CEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEE
Confidence            678899999999999988776 7999985432211           001123322  33455899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEEeCCCCCCCCcceEE-----eecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcccee-E---EE
Q psy11549        136 AQNAIGTQVTPCLYQVVLAGKPQPPQNCSVR-----NETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLL-V---NL  205 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~-----~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~-~---~~  205 (261)
                      +.+..+..... ...+.+...+.+|. +.+.     ...|..++|.|.+  .+..|.. .+.|+++....... .   ..
T Consensus        89 ~~~~~~~~~~~-~~~l~V~~~~~~P~-v~~~~~~~~~~~g~~v~l~C~~--~g~~p~~~~v~W~k~g~~~~~~~~~~~~~  164 (210)
T 1lk3_L           89 QSWNGPLTFGA-GTKLELKRADAAPT-VSIFPPSTEQLATGGASVVCLM--NNFYPRDISVKWKIDGTERRDGVLDSVTD  164 (210)
T ss_dssp             ECSSSSCEECC-CEEEEECCCCBCCE-EEEECCCHHHHTTTEEEEEEEE--EEEBSSCCEEEEEETTEECCTTEEEEECC
T ss_pred             EEcCCCceeCC-CEEEEEcCCCcCCe-EEEECCchhhccCCcEEEEEEE--EeEeCCceEEEEEeCCccCCCCceEccCC
Confidence            99876543221 12333433332332 1221     1248899999997  3334432 33444443221111 1   11


Q ss_pred             ecCCCC------cEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        206 TNLDTP------AFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       206 ~~~~~~------~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      ......      .|.|..+..+|+|.|  +|.|.|.....
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y--~C~a~n~~~~~  202 (210)
T 1lk3_L          165 QDSKDSTYSMSSTLSLTKADYESHNLY--TCEVVHKTSSS  202 (210)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHTCCEE--EEEEECTTCSS
T ss_pred             ccCCCCCEEEEEEEEEChHHhccCCcE--EEEEEecCCCC
Confidence            111111      578888777899999  99999987644

>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*

Probab=99.62  E-value=7.8e-14  Score=106.51  Aligned_cols=215  Identities=15%  Similarity=0.128  Sum_probs=120.3

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec------eeecCceeEEEeeCCCcEEEEEEEeeCCCCce
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP------ICKSDRIVIVGASRSESVDIHCAVEADPPARS   91 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p------~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~   91 (261)
                      .+++|.|.+++..|+|.|+|.+   .+.. ...+.|.|..++      .+......    ..+ ...|.|.+...+...+
T Consensus        49 ~~~~L~i~~~~~~d~G~YtC~~---~~~~-~~~~~l~v~~~~~~~~~t~i~~~~~~----pp~-~~~lsC~~~~~~~~~~  119 (306)
T 3d85_D           49 SGKTLTIQVKEFGDAGQYTCHK---GGEV-LSHSLLLLHKKEDGIWSTDILKDQKE----PKN-KTFLRCEAKNYSGRFT  119 (306)
T ss_dssp             ESSEEEEEECSGGGCEEEEEEE---TTEE-EEEEEEEEEEEETTEECCCSSCCCC-------C-CCCCEEEBSSSSSEEE
T ss_pred             CCCEEEEEecCcCCCceEEEee---CCcc-cceEEEEEEeccCCcceeeeecccCC----CCC-CCcceEEcCCcccCcE
Confidence            6789999999999999999999   2443 445566665432      11100000    011 3356677665542225


Q ss_pred             eEEEEcCCcccccc--------CCc-eEEeCC---ceeEEEEec-----------C------CCCcCeEEEEEEEcCCce
Q psy11549         92 FKWKFNNSGETLDV--------GSE-RFSSGS---RGSMLRYTP-----------V------TELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        92 ~~W~~~~~~~~~~~--------~~~-~~~~~~---~~~~l~i~~-----------~------~~~d~g~y~C~~~~~~~~  142 (261)
                      ..|..+... .+..        ... ......   ......+.+           .      .......++|.|.|..|.
T Consensus       120 C~W~pg~~~-~l~~~~~~~r~~~~~~~~~C~~~~~~~~~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~  198 (306)
T 3d85_D          120 CWWLTTIST-DLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKY  198 (306)
T ss_dssp             EEEEESCCS-SEEEEEEEEECSSSCEEEEECCCEEEEEEEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEE
T ss_pred             EEecCCCCC-ceeEEEEEEecCCCCcceECCCCCCCccceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCc
Confidence            666654431 1100        000 000000   000111111           0      112346678999999887


Q ss_pred             EEeeEEEEEEeCCCCCCCCcceEEeecC-CeEEEEeecCCCCC-----CCeEEEEEEEeCCccceeEEEecCCCCcEEEc
Q psy11549        143 QVTPCLYQVVLAGKPQPPQNCSVRNETT-SSVHISCTPGYDGG-----LPQTFTLELYSASDLNLLVNLTNLDTPAFTLE  216 (261)
Q Consensus       143 ~~~~~~~~v~~~~~p~~p~~~~v~~~~~-~~~~l~c~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  216 (261)
                      ......+.+.....|.||.++.+..... ..+.|+|.++....     ....|.+.|+..+... .+.......+.+.| 
T Consensus       199 ~s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~~-~~~~~~~~~ts~~l-  276 (306)
T 3d85_D          199 EQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKRE-KKDRVFTDKTSATV-  276 (306)
T ss_dssp             EEEEEEECHHHHBCCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC-------CEEEESSSEEEE-
T ss_pred             cccceEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCCc-cEEEeeccccEEEE-
Confidence            6554444444457899999998886333 78999999865433     3357899888765432 12222223355655 


Q ss_pred             CCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        217 DLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       217 ~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                          .++..|+|+|+|.|..|.|.+|.+....
T Consensus       277 ----~~~~~Y~vqVRa~~~~~~G~WSeWS~~~  304 (306)
T 3d85_D          277 ----ICRKNASISVRAQDRYYSSSWSEWASVP  304 (306)
T ss_dssp             ----CCCSSCEEEEEEEESSSCCCCCCCEEEE
T ss_pred             ----eCCCeEEEEEEeccCCCCCCCCCCCCCc
Confidence                3478999999999999999998887653

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.62  E-value=4e-15  Score=105.08  Aligned_cols=112  Identities=14%  Similarity=0.177  Sum_probs=77.9

Q ss_pred             ceEE-EECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCce
Q psy11549         13 ARII-LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARS   91 (261)
Q Consensus        13 ~~~~-~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~   91 (261)
                      |..+ ..+++|+|.+++.+|+|.|+|.+.+..  .....+.|.|..++.   .+ . +.. .+..++|.|.+...|.| .
T Consensus        61 R~~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~--~~~~~~~L~V~~~~~---~P-~-i~~-~~~~v~L~C~~~~gp~p-~  131 (180)
T 2dru_A           61 RVDLDKTNGALRIYNVSKEDRGDYYMRMLHET--EDQWKITMEVYEMVS---KP-M-IYW-ECSNATLTCEVLEGTDV-E  131 (180)
T ss_dssp             TEEECTTTCCEEECSCCGGGCEEEEEEEESSS--EEEEEEEEEEECCCC---CC-E-EEE-EGGGTEEEEECSSCTTC-E
T ss_pred             eEEEeCCCccEEEcCCCHHHCeEEEEEEEcCC--eEEEEEEEEEECCCC---CC-E-EEe-cCCCEEEEEEeCCCCCC-E
Confidence            3444 456799999999999999999997765  336677888875421   11 1 222 45679999999444666 8


Q ss_pred             eEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         92 FKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        92 ~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +.|++++..  +.      ...  ...|.+..  .+|+|.|+|.|.|..+....
T Consensus       132 i~W~~~~~~--l~------~~~--~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~  173 (180)
T 2dru_A          132 LKLYQGKEH--LR------SLR--QKTMSYQW--TNLRAPFKCKAVNRVSQESE  173 (180)
T ss_dssp             EEEEETTEE--EE------EES--SSEEEEEC--SCCSSCEEEEEEETTEEEEE
T ss_pred             EEEEECCeE--Cc------CCC--CCEEEEEE--hhcCccEEEEEecCcCcccc
Confidence            999998742  21      111  12455533  78999999999999887665

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.62  E-value=1.4e-14  Score=108.73  Aligned_cols=118  Identities=15%  Similarity=0.233  Sum_probs=81.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece------------------ee-cCceeEEEeeCCCcEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI------------------CK-SDRIVIVGASRSESVDIHC   81 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~------------------~~-~~~~~~~~~~~g~~~~l~C   81 (261)
                      +|.|.+++.+|+|.|+|.+.+..+......+.|.|..+|.                  +. ..... ..+.+|++++|.|
T Consensus        82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G~~v~L~C  160 (264)
T 2gjj_A           82 TLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGP-EVVKTGASVKISC  160 (264)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCC-EEECTTCCEEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCC-EEEcCCCcEEEEE
Confidence            8999999999999999999887653323446788876531                  11 11112 3588999999999


Q ss_pred             EEeeCCC-CceeEEEEcCCccccc-c-----C----------CceEEe----CCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         82 AVEADPP-ARSFKWKFNNSGETLD-V-----G----------SERFSS----GSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        82 ~~~~~~~-~~~~~W~~~~~~~~~~-~-----~----------~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .+.+.+. ...+.|++...+.... +     .          ..++..    ......|.|.++..+|+|.|+|.+.|.
T Consensus       161 ~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          161 KASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN  239 (264)
T ss_dssp             EEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             EEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence            9998764 2389999864221110 0     0          112221    234568999999999999999999985

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.61  E-value=1.2e-14  Score=110.66  Aligned_cols=120  Identities=15%  Similarity=0.242  Sum_probs=82.4

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCC-Cc---ceeeeEEEEEEe----------------eceeecCceeEEEeeCCCcEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTK-GE---ATSNQLKLRVKY----------------APICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~-~~---~~s~~~~l~V~~----------------~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      .+|.|.+++.+|+|.|+|.+.+.. |.   .....+.|.|..                ++.+...+.. +.+.+|++++|
T Consensus       101 ~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~-~~v~~G~~v~L  179 (291)
T 2gki_A          101 AYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSS-LAVSAGEKVTM  179 (291)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSE-EEEETTSCEEE
T ss_pred             EEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCE-EEEcCCCcEEE
Confidence            489999999999999999998874 21   112235777765                1223322323 67889999999


Q ss_pred             EEEEeeCCCC-----ceeEEEEcCCccccc--c---------CCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         80 HCAVEADPPA-----RSFKWKFNNSGETLD--V---------GSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        80 ~C~~~~~~~~-----~~~~W~~~~~~~~~~--~---------~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .|.+.+.+.+     ..+.|++...+....  .         ...++.  .......|.|.++..+|+|.|+|.+.+..
T Consensus       180 ~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~  258 (291)
T 2gki_A          180 SCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYH  258 (291)
T ss_dssp             EEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCC
Confidence            9999887654     279999864221110  0         022332  23344579999999999999999999853

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.61  E-value=2.6e-15  Score=109.69  Aligned_cols=176  Identities=13%  Similarity=0.075  Sum_probs=107.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCC----CceeEEEEcCCcccc----------ccCCceEEeCC-----ceeEEEEecCCCCcC
Q psy11549         69 VGASRSESVDIHCAVEADPP----ARSFKWKFNNSGETL----------DVGSERFSSGS-----RGSMLRYTPVTELDY  129 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~----~~~~~W~~~~~~~~~----------~~~~~~~~~~~-----~~~~l~i~~~~~~d~  129 (261)
                      +.+..|++++|.|.+.+.+.    ...+.|++++.....          .....++....     ....|.|.++..+|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            45679999999999987653    248999997643211          01112222211     245799999999999


Q ss_pred             eEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcc---eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc-cee--E
Q psy11549        130 GTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNC---SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL-NLL--V  203 (261)
Q Consensus       130 g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~---~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~-~~~--~  203 (261)
                      |.|+|.+.+.. ....  .+.+.+..++..|...   ......|+.+.|.|.+  ..+.|.....|++..+.. ...  .
T Consensus        85 G~Y~C~~~~~~-~~~~--~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~--~~g~P~~~v~W~~~~~~~~~~~~~~  159 (222)
T 4i0k_A           85 GSYTCFVSIQD-FDSA--AVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSS--YQGYPEAEVFWKDGQGVPLTGNVTT  159 (222)
T ss_dssp             SCEEEEEEECC-CCCC--CCCCCCCBCCCCCEEECCC-----CCSEEEEEEEE--EEEBSCCEEEEECTTSCBCCSEEEE
T ss_pred             EEEEEEEEeCC-CceE--EEEEEEEcCCCCCcEEeCCCceecCCceEEEEEec--ccccCCCeEEEEcCCCccCCCCcce
Confidence            99999999853 2222  3345554444433211   1112358999999996  344454434445422222 111  1


Q ss_pred             EEecCCCCc---EEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeecc
Q psy11549        204 NLTNLDTPA---FTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       204 ~~~~~~~~~---~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~  251 (261)
                      .........   +.|.+++.+|.|.|  +|.|.|..|....+..+.+..++
T Consensus       160 ~~~~~~~~~~~~l~i~~v~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          160 SQMANERGLFDVHSVLRVVLGANGTY--SCLVRNPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             EEEECTTSCEEEEEEEEEECCTTCEE--EEEEEETTTTEEEEEEEECCC--
T ss_pred             eEEcCCCCeEEEEEEEEEEeCCCCEE--EEEEECCCCCCceEEEEEEeCCc
Confidence            222222232   67888889999999  99999999988888777776443

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.61  E-value=6.3e-14  Score=104.68  Aligned_cols=162  Identities=15%  Similarity=0.168  Sum_probs=94.7

Q ss_pred             EEeeCCCcEEEEEEEeeC--CCCceeEEEEcCCcccccc-----------CCceEE--eCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEAD--PPARSFKWKFNNSGETLDV-----------GSERFS--SGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~~-----------~~~~~~--~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+.+|++++|.|.+.+.  +.+ .+.|++...+.....           ...++.  .......|.|.++..+|+|.|+
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~   90 (256)
T 3ux9_B           12 VSGAPGQRVTISCSGSSSNIGSN-YVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYY   90 (256)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTS-CCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             EEEcCCCcEEEEEecCCCCCCCc-eEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEE
Confidence            678899999999999876  445 799998542211110           112222  2334557999999999999999


Q ss_pred             EEEEcCCceE-EeeEEEEEEeCCCCCC-----------------CCcc----eEEeecCCeEEEEeecCCCCCCC-eEEE
Q psy11549        134 CAAQNAIGTQ-VTPCLYQVVLAGKPQP-----------------PQNC----SVRNETTSSVHISCTPGYDGGLP-QTFT  190 (261)
Q Consensus       134 C~~~~~~~~~-~~~~~~~v~~~~~p~~-----------------p~~~----~v~~~~~~~~~l~c~~~~~~~~p-~~~~  190 (261)
                      |.+.+..+.. .......+.|..+|..                 +..+    ......|+.++|.|.+  .+..+ ....
T Consensus        91 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~--~~~~~~~~~v  168 (256)
T 3ux9_B           91 CQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAA--SGFTFSSYAM  168 (256)
T ss_dssp             EEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEE--ESSCGGGSEE
T ss_pred             EEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEE--eCCcccccEE
Confidence            9999864321 1111233444333310                 0001    1223569999999997  33221 2344


Q ss_pred             EEEEeCCcccee---------------------EEEec---CCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        191 LELYSASDLNLL---------------------VNLTN---LDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       191 ~~~~~~~~~~~~---------------------~~~~~---~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      .|++........                     +....   .....|+|.+++.+|+|.|  +|.|.|.
T Consensus       169 ~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~~~~~  235 (256)
T 3ux9_B          169 SWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVY--YCARYID  235 (256)
T ss_dssp             EEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE--EEEEEET
T ss_pred             EEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEE--EEEEEcC
Confidence            445542221111                     11110   1223499999999999999  8889885

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.60  E-value=6.5e-15  Score=103.12  Aligned_cols=152  Identities=13%  Similarity=0.102  Sum_probs=96.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc----------CCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV----------GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      +.+..|++++|.|.+.. |.+ .+.|++++.. ....          ...++.......+|.|.++..+|+|.|.|.+.+
T Consensus         5 v~~~~G~~VtL~c~~~~-~~~-~i~W~~~~~~-i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n   81 (171)
T 1ccz_A            5 IYGVVYGNVTFHVPSNV-PLK-EVLWKKQKDK-VAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPN   81 (171)
T ss_dssp             EEEETTCCEEECCCCSS-CCS-CEEEEETTEE-EEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTT
T ss_pred             EEEEcCCCEEEcCCCCC-Ccc-eEEEEeCCcE-EEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeC
Confidence            56779999999998843 545 8999987642 1110          111333333345799999999999999999998


Q ss_pred             CCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCC
Q psy11549        139 AIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDL  218 (261)
Q Consensus       139 ~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  218 (261)
                      ..+  .  ..+.+.|..++..|.. ...   .....|.|.+  .++.++.+.|+ ++.....      ......+.+.+ 
T Consensus        82 ~~~--~--~~~~L~V~~~~~~p~i-~~~---~~~~~L~C~~--~~~p~p~i~W~-~~~~~l~------~~~~~~l~~~~-  143 (171)
T 1ccz_A           82 ITD--T--MKFFLYVLEMVSKPMI-YWE---CSNATLTCEV--LEGTDVELKLY-QGKEHLR------SLRQKTMSYQW-  143 (171)
T ss_dssp             CCS--C--EEEEEEEECCCCCCEE-EEE---TTTTEEEEEC--SSCSSCEEEEE-ETTEEEE------EESSSEEEEEC-
T ss_pred             CCC--c--EEEEEEEECcCCCCEE-EEe---cCCcEEEEEe--CCCCCcEEEEE-ECCEECc------CCcceEEEEec-
Confidence            776  2  3555666555555532 222   1224899997  44444556554 3322211      11224455555 


Q ss_pred             CCCCccEEEEEEEEEcCCCcCCceee
Q psy11549        219 GLDGTVLMRVVISGVNAKGRSLPVIW  244 (261)
Q Consensus       219 ~l~~~~~Y~~~~~a~N~~G~~~~s~~  244 (261)
                       ..+.|.|  +|.|.|.+|....+..
T Consensus       144 -~~~~g~Y--~C~a~N~~~~~~~~~~  166 (171)
T 1ccz_A          144 -TNLRAPF--KCKAVNRVSQESEMEV  166 (171)
T ss_dssp             -SCCSSCE--EEEEEETTEEEEEEEC
T ss_pred             -cCCCceE--EEEEEcccCcccceeE
Confidence             7788899  9999999997655443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.60  E-value=8.2e-14  Score=114.29  Aligned_cols=165  Identities=10%  Similarity=0.069  Sum_probs=91.8

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeC-C----ceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSG-S----RGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~-~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      +..|+.++|.|.+.+..+ ...+.|++++............... +    ..+.|.|.....+|.|.|+|.|.|..+...
T Consensus       309 ~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~  388 (512)
T 1zvo_C          309 LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ  388 (512)
T ss_pred             hccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC
Confidence            457999999999998644 4589999987531100000111111 1    124688988888999999999999866443


Q ss_pred             eeEEEEEEeCCC--CCCCCcceEE--eecCCeEE-EEeecCCCCCCCeE-EEEEEEeCCcccee-E---EE-ecCCC---
Q psy11549        145 TPCLYQVVLAGK--PQPPQNCSVR--NETTSSVH-ISCTPGYDGGLPQT-FTLELYSASDLNLL-V---NL-TNLDT---  210 (261)
Q Consensus       145 ~~~~~~v~~~~~--p~~p~~~~v~--~~~~~~~~-l~c~~~~~~~~p~~-~~~~~~~~~~~~~~-~---~~-~~~~~---  210 (261)
                       ...+... ...  +.+|.. .+.  ...+..+. |.|.+  .+..|.. .+.|+++....... .   .. .....   
T Consensus       389 -~~~~~~~-~~~~~~~~p~v-~~~~~~~~~~~~~~L~C~~--~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~  463 (512)
T 1zvo_C          389 -RLMALRE-PAAQAPVKLSL-NLLASSDPPEAASWLLCEV--SGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTF  463 (512)
T ss_pred             -ceeEEee-cCCCCCCCCEE-EEEccCcCCCCceEEEEEE--eeeCCCCcEEEEEECCeECcCccccccceeECCCCCEE
Confidence             2222221 111  222221 111  11477888 99998  5545543 34455543322111 1   11 11122   


Q ss_pred             ---CcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549        211 ---PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       211 ---~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                         ..+.|......+++.|  +|.|.|........
T Consensus       464 ~~~s~L~v~~~~~~~~g~Y--tC~v~h~~l~~~~~  496 (512)
T 1zvo_C          464 WAWSVLRVPAPPSPQPATY--TCVVSHEDSRTLLN  496 (512)
T ss_pred             EEEEEEEECchhcCCCCeE--EEEEEecCCCCceE
Confidence               2344555334468899  99999998754433

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.60  E-value=1.1e-13  Score=103.49  Aligned_cols=159  Identities=13%  Similarity=0.189  Sum_probs=92.8

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc-c--------------CCceEEe----CCceeEEEEecCCCCc
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD-V--------------GSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~-~--------------~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      +.+.+|++++|.|.+.+.+ +...+.|++...+.... +              ...++..    ......|.|.++..+|
T Consensus        18 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   97 (257)
T 3gkz_A           18 SLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSED   97 (257)
T ss_dssp             SEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChhh
Confidence            3477999999999999854 23389999843211110 0              1122222    1234579999999999


Q ss_pred             CeEEEEEEEcCC----ceEEeeEEEEEEeCCC--------------CC---CCCcceEEeecCCeEEEEeecCCCCCCCe
Q psy11549        129 YGTLSCAAQNAI----GTQVTPCLYQVVLAGK--------------PQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQ  187 (261)
Q Consensus       129 ~g~y~C~~~~~~----~~~~~~~~~~v~~~~~--------------p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~  187 (261)
                      +|.|+|.+.+..    ........+  .|..+              |.   .|.  .+....|+.++|.|.+  .+..+.
T Consensus        98 sG~Y~C~~~n~~~~~~~~~~~~~~l--~V~~~~~~~~~~~~~~~~~~~~~~~p~--~~~v~~G~~v~L~C~~--~~~~~~  171 (257)
T 3gkz_A           98 TATYYCSYFDSDDYAMEYWGQGTSV--TVSGGGGSGGGGSGGGGSQIVLTQSPA--IMSASPGEKVTLTCSA--SSSVSS  171 (257)
T ss_dssp             CEEEEEEEECTTCTTCEEECCCEEE--EEC---------CTTCCCCCCEECSCS--EEEECTTCCEEEEEEE--SSCCCG
T ss_pred             CEEEEEEEecCCCcceeEEcCCEEE--eecCchhhcccccCCCccceEEEcCCc--eEEEeCCCcEEEEEEE--ccCccc
Confidence            999999999862    112222233  33332              11   122  2444679999999997  333333


Q ss_pred             EEEEEEEe-CCcccee---------------EE-EecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        188 TFTLELYS-ASDLNLL---------------VN-LTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       188 ~~~~~~~~-~~~~~~~---------------~~-~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      ....|++. .+.....               +. ........|.|.+++.+|.|.|  .|.|.|.
T Consensus       172 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~~~~~  234 (257)
T 3gkz_A          172 SHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASY--FCHQWSS  234 (257)
T ss_dssp             GGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE--EEEECSS
T ss_pred             eEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEE--EEEEccC
Confidence            13344443 2222111               10 0111223599999999999999  8888764

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.60  E-value=6.7e-14  Score=103.96  Aligned_cols=161  Identities=14%  Similarity=0.161  Sum_probs=95.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCC----CceeEEEEcCCccccc--c---------CCceEEe--CCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPP----ARSFKWKFNNSGETLD--V---------GSERFSS--GSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~----~~~~~W~~~~~~~~~~--~---------~~~~~~~--~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|++++|.|.+.+.+.    ...+.|++...+....  .         ...++..  ......|.|.++..+|+|.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   90 (247)
T 1svz_A           11 LPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGI   90 (247)
T ss_dssp             EEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCEE
Confidence            66889999999999988772    3389999854322110  0         0123322  3345579999999999999


Q ss_pred             EEEEEEcCCceE-EeeEEEEEEeCCCCC----------CCCc----ceEEeecCCeEEEEeecCCCCCC-CeEEEEEEEe
Q psy11549        132 LSCAAQNAIGTQ-VTPCLYQVVLAGKPQ----------PPQN----CSVRNETTSSVHISCTPGYDGGL-PQTFTLELYS  195 (261)
Q Consensus       132 y~C~~~~~~~~~-~~~~~~~v~~~~~p~----------~p~~----~~v~~~~~~~~~l~c~~~~~~~~-p~~~~~~~~~  195 (261)
                      |.|.+.+..+.. .....+.|  ..++.          ++..    .......|+.++|.|..  .+.. +.....|++.
T Consensus        91 Y~C~~~n~~~~~~~~~~~l~V--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~--~~~~~~~~~v~W~k~  166 (247)
T 1svz_A           91 YYCFQGSHFPPTFGGGTKLEI--KGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKA--TNYAFTDYSMHWVKQ  166 (247)
T ss_dssp             EEEEECSSSSCEECCCEEEEE--C---------------CCEEEECCCEEECTTCCEEEEEEE--ESSCGGGSCEEEEEE
T ss_pred             EEEEEccCCccEECCCEEEEE--ECCccccccccccccCceEEeCCCceeecCCCcEEEEEEE--cCcccCCcEEEEEEe
Confidence            999999875432 12223333  33221          1110    01224679999999997  3332 2233445554


Q ss_pred             C-Cccc--------------------eeEEEe---cCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        196 A-SDLN--------------------LLVNLT---NLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       196 ~-~~~~--------------------~~~~~~---~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      . +...                    ..+...   ......|.|.+++.+|.|.|  .|.|.|.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~a~n~  228 (247)
T 1svz_A          167 APGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATY--FCVRDRH  228 (247)
T ss_dssp             CTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEE--EEEEEEG
T ss_pred             CCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEE--EEEEecc
Confidence            2 1111                    011111   11234799999999999999  8889885

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.60  E-value=7.1e-15  Score=102.92  Aligned_cols=107  Identities=13%  Similarity=0.113  Sum_probs=74.8

Q ss_pred             ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEc
Q psy11549         18 SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFN   97 (261)
Q Consensus        18 ~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~   97 (261)
                      .+++|.|.+++.+|+|.|+|.+.|..+   +..+.|.|..++..   + . +.... ....|.|.+.+.|.| ++.|+++
T Consensus        58 ~~~sL~I~~v~~~DsG~Y~C~~~n~~~---~~~~~L~V~~~~~~---p-~-i~~~~-~~~~L~C~~~~~p~p-~i~W~~~  127 (171)
T 1ccz_A           58 VSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEMVSK---P-M-IYWEC-SNATLTCEVLEGTDV-ELKLYQG  127 (171)
T ss_dssp             TTCCEEECSCCGGGCEEEEEECTTCCS---CEEEEEEEECCCCC---C-E-EEEET-TTTEEEEECSSCSSC-EEEEEET
T ss_pred             CCCeEEECCCChhhCceEEEEEeCCCC---cEEEEEEEECcCCC---C-E-EEEec-CCcEEEEEeCCCCCc-EEEEEEC
Confidence            568999999999999999999988776   45678888754321   1 1 11212 224899999988877 8999997


Q ss_pred             CCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         98 NSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +..  +...      .  ...+.+..  .+|.|.|+|.|.|..+.....
T Consensus       128 ~~~--l~~~------~--~~~l~~~~--~~~~g~Y~C~a~N~~~~~~~~  164 (171)
T 1ccz_A          128 KEH--LRSL------R--QKTMSYQW--TNLRAPFKCKAVNRVSQESEM  164 (171)
T ss_dssp             TEE--EEEE------S--SSEEEEEC--SCCSSCEEEEEEETTEEEEEE
T ss_pred             CEE--CcCC------c--ceEEEEec--cCCCceEEEEEEcccCcccce
Confidence            742  2111      1  11233433  778999999999998886653

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.60  E-value=4.8e-15  Score=108.10  Aligned_cols=123  Identities=15%  Similarity=0.172  Sum_probs=79.5

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCc---ceeeeEEEEEEee----ceeecCceeEEEeeCCCcEEEEEEEee-CCCCce
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGE---ATSNQLKLRVKYA----PICKSDRIVIVGASRSESVDIHCAVEA-DPPARS   91 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~---~~s~~~~l~V~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~   91 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+.   .....+.|.|...    |.+...... ..+..|+.+.|.|.+.+ .|.|..
T Consensus        79 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~  157 (219)
T 1c1e_H           79 AYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVT  157 (219)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCC-SSSCCSSEEEEEEEEEEEBSSCCE
T ss_pred             EEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCc-cccccCCeEEEEEEcccccCCCeE
Confidence            48999999999999999999987642   1223567777653    333221111 23468999999999998 666658


Q ss_pred             eEEEEcCCccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         92 FKWKFNNSGETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        92 ~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +.|++++....... .......+   ..+.|.|..... |.|.|+|.|.|..+....
T Consensus       158 v~W~~~g~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~  212 (219)
T 1c1e_H          158 VTWNSGSLSSGVHT-FPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKV  212 (219)
T ss_dssp             EEEGGGTBCTTEEE-CCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEE
T ss_pred             EEEEeCCcccceEe-cCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccE
Confidence            99998874311110 11111111   123578854444 569999999998775443

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.60  E-value=1.8e-15  Score=112.88  Aligned_cols=119  Identities=20%  Similarity=0.211  Sum_probs=79.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe---eceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY---APICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWKF   96 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~   96 (261)
                      +|.|.+++.+|+|.|+|.+.+..+......+.|.|..   +|.+...... ..+..|+.++|.|.+.+.++ +.++.|++
T Consensus       110 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  188 (252)
T 3bkj_L          110 TLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKI  188 (252)
T ss_dssp             EEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCC-HHHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCC-hhhcCCCcEEEEEEEeeEeCCCcEEEEEE
Confidence            8999999999999999999887654333345677753   3433321111 11236889999999998544 34799999


Q ss_pred             cCCccccccC-C--ceEEe-CC----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         97 NNSGETLDVG-S--ERFSS-GS----RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        97 ~~~~~~~~~~-~--~~~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ++..  +... .  ..... .+    ..+.|.|.++..+|.|.|+|.|.|....
T Consensus       189 ~g~~--~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  240 (252)
T 3bkj_L          189 DGSE--RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  240 (252)
T ss_dssp             TTEE--ECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred             CCee--cCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence            8742  2111 0  00111 11    1246899999999999999999997543

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.60  E-value=5e-14  Score=91.76  Aligned_cols=99  Identities=17%  Similarity=0.268  Sum_probs=71.4

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +|.+...... +.+..|+.+.|.|.+.+.|.+ .+.|++++.... ......+........|.|.++..+|+|.|+|.|.
T Consensus         7 pp~i~~~~~~-~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (114)
T 2cqv_A            7 GPQIIQFPED-QKVRAGESVELFGKVTGTQPI-TCTWMKFRKQIQ-ESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   83 (114)
T ss_dssp             CCEESCCCCS-EEEETTCCEEEEEEEESSSSC-EEEEEESSSBCC-CSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CCEEEeCCCC-eEEeCCCeEEEEEEEEcCCCC-EEEEEECCEECc-CCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence            4555544444 678899999999999998888 899999874321 1122223334446689999999999999999999


Q ss_pred             cCCceEEeeEEEEEEeCCCCCCCC
Q psy11549        138 NAIGTQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus       138 ~~~~~~~~~~~~~v~~~~~p~~p~  161 (261)
                      |..|.....  +.+.+..+|.+|.
T Consensus        84 N~~g~~~~~--~~l~V~~~p~~P~  105 (114)
T 2cqv_A           84 NKLGSRQAQ--VNLTVVDKPDPPA  105 (114)
T ss_dssp             CSSCEEECC--EEEEEECSCSCCC
T ss_pred             ECCCcEEEE--EEEEEECCCCCCC
Confidence            999977774  4444545665554

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.60  E-value=4.3e-15  Score=108.60  Aligned_cols=123  Identities=13%  Similarity=0.140  Sum_probs=81.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCc----ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCc
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGE----ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PPAR   90 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~----~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~   90 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+.    .....+.|.|..    +|.+...... ..+..|+.++|.|.+.+. |.|.
T Consensus        81 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~  159 (222)
T 1q9r_B           81 LYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPV  159 (222)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCC-SCCCCSSEEEEEEEEEEEBSSCC
T ss_pred             EEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcccc-ccccCCCcEEEEEEEccEECCCC
Confidence            38999999999999999999887541    112345777764    2333221111 124579999999999986 6555


Q ss_pred             eeEEEEcCCccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         91 SFKWKFNNSGETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        91 ~~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .+.|++++...... ........+   ..+.|.|..+..+| |.|+|.|.|..+....
T Consensus       160 ~v~W~~~g~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~  215 (222)
T 1q9r_B          160 TVTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  215 (222)
T ss_dssp             EEEEGGGTBCTTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             EEEEecCCeEcceE-eccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcE
Confidence            89999876421110 000000111   12368899998889 9999999998876544

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.59  E-value=7.3e-14  Score=104.34  Aligned_cols=160  Identities=15%  Similarity=0.125  Sum_probs=95.3

Q ss_pred             EEeeCCCcEEEEEEEeeCC--CCceeEEEEcCCccccc-c---------------CCceEEe----CCceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVEADP--PARSFKWKFNNSGETLD-V---------------GSERFSS----GSRGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~~-~---------------~~~~~~~----~~~~~~l~i~~~~~  126 (261)
                      +.+.+|++++|.|.+.+.+  .+ .+.|++...+.... +               ...++..    ......|.|.++..
T Consensus        12 ~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (256)
T 3umt_A           12 ELVKPGASVKISCKTSGYTFTEY-TMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS   90 (256)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eEEcCCCCEEEEEEEeccccccc-EEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence            4578999999999998765  34 79999743221110 0               0122222    12345699999999


Q ss_pred             CcCeEEEEEEEcC----CceEEeeEEEEEEeC--------------CCCC---CCCcceEEeecCCeEEEEeecCCCCCC
Q psy11549        127 LDYGTLSCAAQNA----IGTQVTPCLYQVVLA--------------GKPQ---PPQNCSVRNETTSSVHISCTPGYDGGL  185 (261)
Q Consensus       127 ~d~g~y~C~~~~~----~~~~~~~~~~~v~~~--------------~~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~  185 (261)
                      +|+|.|.|.+.+.    .+.......+.|...              .+|.   .|.  .+....|+.++|.|.+  .+..
T Consensus        91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~v~~G~~v~L~C~~--~~~~  166 (256)
T 3umt_A           91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPS--SLSASLGERVSITCRA--SQDI  166 (256)
T ss_dssp             GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECS--EEEECTTCCEEEEEEE--SSCC
T ss_pred             ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCC--eEEEECCCCEEEEEEE--ecCC
Confidence            9999999999987    222223223333321              0111   122  2344679999999997  3332


Q ss_pred             CeEEEEEEEeCC-ccce---------------eEE-EecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        186 PQTFTLELYSAS-DLNL---------------LVN-LTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       186 p~~~~~~~~~~~-~~~~---------------~~~-~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      +. .+.|++... ....               .+. ........|+|.+++.+|.|.|  .|.|.|..
T Consensus       167 ~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~~~~~~  231 (256)
T 3umt_A          167 GS-NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDY--YCLQYASS  231 (256)
T ss_dssp             TT-CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEE--EEEECSSS
T ss_pred             Cc-EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEE--EEEEeeCC
Confidence            33 445555422 1111               110 0111223599999999999999  88998854

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.59  E-value=2.4e-14  Score=104.12  Aligned_cols=164  Identities=12%  Similarity=0.082  Sum_probs=97.4

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc-----------cCCceEEe--CCceeEEEEecCCCCcCeEEEE
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD-----------VGSERFSS--GSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~-----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +.+..|++++|.|.+.+.+ +...+.|++.+.+....           ....++..  ......|.|.++..+|+|.|+|
T Consensus        10 ~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C   89 (216)
T 2xzc_L           10 VSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYC   89 (216)
T ss_dssp             EEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEEE
Confidence            6788999999999964443 22389999865322110           01123322  3445589999999999999999


Q ss_pred             EEEcCCc--eEEeeEEEEEEeCCCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcccee-E--
Q psy11549        135 AAQNAIG--TQVTPCLYQVVLAGKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLL-V--  203 (261)
Q Consensus       135 ~~~~~~~--~~~~~~~~~v~~~~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~-~--  203 (261)
                      .+.+..+  .......  +.+...+.+|.. .+..     ..|..++|.|.+  .+..|.. .+.|+++....... .  
T Consensus        90 ~~~~~~~~~~~~~~~~--l~V~~~~~~P~v-~~~~~~~~~~~g~~v~L~C~~--~g~~P~~~~v~W~k~g~~~~~~~~~~  164 (216)
T 2xzc_L           90 GTWDSSLNPVFGGGTK--LEIKRTVAAPSV-FIFPPSDEQLKSGTASVVCLL--NNFYPREAKVQWKVDNALQSGNSQES  164 (216)
T ss_dssp             EEECTTSCEEEBCCEE--EEECCCCBCCEE-EEECCCHHHHHTTEEEEEEEE--EEEBSSCCEEEEEETTEECCSSEEEE
T ss_pred             EEEeCCCcceECCCEE--EEEcCCCCCCce-EEeCCChhhccCCcEEEEEEE--EeEcCCceEEEEEECCeecCCCeeEe
Confidence            9999875  1222223  344333334432 1211     237899999997  4434432 33444443222111 1  


Q ss_pred             -EEecCCCC------cEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        204 -NLTNLDTP------AFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       204 -~~~~~~~~------~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                       ........      .|.|..+...|+|.|  +|.|.|.....
T Consensus       165 ~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y--~C~a~n~~~~~  205 (216)
T 2xzc_L          165 VTEQDSKDSTYSLSSTLTLSKADYEKHKVY--ACEVTHQGLSS  205 (216)
T ss_dssp             ECCCCTTTCCEEEEEEEEEEHHHHTTCCEE--EEEEECTTCSS
T ss_pred             cCcccCCCCCEEEEEEEEECHHHhCCCCcE--EEEEEcCCCCC
Confidence             11111111      577887777889999  99999988654

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.59  E-value=5.7e-14  Score=113.37  Aligned_cols=235  Identities=9%  Similarity=0.010  Sum_probs=134.3

Q ss_pred             CCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEE
Q psy11549          2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHC   81 (261)
Q Consensus         2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C   81 (261)
                      +||.++..+   ++....+.|+|.++...|+|.|.|.+.+ .+.  ...+.|.|..+|.......  ........+.+..
T Consensus       236 ~ng~~i~~~---ri~~~~~~L~I~nl~~sd~g~y~~~C~~-~~~--i~~~~l~v~~pP~~P~nl~--C~~~~~~svtcsW  307 (488)
T 2q7n_A          236 IGNTLRPLI---HLYGQTVAIHILNIPVSENSGTNIIFIT-DDD--VYGTVVFAGYPPDVPQKLS--CETHDLKEIICSW  307 (488)
T ss_dssp             ETTEECCCE---ECSSSCEEEECCSCCCCCSSCEEEEEEE-SSC--EEEEEEEEECCCCCCCSCE--EEBSSSSEEEEEE
T ss_pred             ECCEECchh---hccceEEEEEEeCCCcccCCcEEEEEEc-CCe--EEEEEEEeeCCCCCCcccE--EEEcCCCEEEEEE
Confidence            677777432   2211234899999999999999887763 222  3367777877665322211  2222333333333


Q ss_pred             EEeeCC-----CCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE--eC
Q psy11549         82 AVEADP-----PARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV--LA  154 (261)
Q Consensus        82 ~~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~--~~  154 (261)
                      ......     +...+..+....+....-.... ..........+........+.+++.|.|..|....  .+.+.  ..
T Consensus       308 ~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~-~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~S--~~~~~~~~~  384 (488)
T 2q7n_A          308 NPGRITGLVGPRNTEYTLFESISGKSAVFHRIE-GLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQS--AVVINVTER  384 (488)
T ss_dssp             CCCSCCCCCTTSSCEEEEEETTTCCEEEEECSS-CCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEEE--EEECCGGGT
T ss_pred             eCCCcCCCCCCCceeEEEEEEECCCCCCCcccc-ccCCceEEEEEcCCCCccEEEEEEEEEeCCCCccc--eEEEEecCC
Confidence            322211     1113333221111000000000 00012223445433334677899999999888543  33333  23


Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCC-CCCCeEEEEEEEeCCccceeEEEec-C-CCCcE--EEcCCCCCCccEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYD-GGLPQTFTLELYSASDLNLLVNLTN-L-DTPAF--TLEDLGLDGTVLMRVV  229 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~-~-~~~~~--~i~~~~l~~~~~Y~~~  229 (261)
                      .+|.+|.++.+.......+.|+|.++.. ++....|.+.|+..+.......... . ....+  .|.+  |.+++.|+|+
T Consensus       385 v~P~PP~nl~v~~~s~~sl~LsW~pP~~~~g~~l~YeV~Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~--L~P~T~Y~~r  462 (488)
T 2q7n_A          385 VAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDK--LNPYTAYTFR  462 (488)
T ss_dssp             BCCCCCEEEEEEECSTTCEEEEEEEEEECSSSEEEEEEEEBCTTSCCEEEEEEEECCEEEEEEEEECS--CCSSCCBBCC
T ss_pred             CCCCCCeEEEEEecCCCEEEEEEeCCCCCCCcceEEEEEEEECCCCCceEEEEEecCCCcEEEEEeCC--CCCCceEEEE
Confidence            5788999998887788999999997543 3334569999987655421111111 1 12455  8999  9999999999


Q ss_pred             EEEEcCCCc---CCceeeeeeeec
Q psy11549        230 ISGVNAKGR---SLPVIWDDFSMS  250 (261)
Q Consensus       230 ~~a~N~~G~---~~~s~~~~~~~~  250 (261)
                      |+|.| .|.   |++|..+.+.++
T Consensus       463 VRA~~-~g~G~WS~WS~~v~~~T~  485 (488)
T 2q7n_A          463 VRCSS-KTFWKWSRWSDEKRHLTT  485 (488)
T ss_dssp             EEEEE-SSCSSCCCCCCCCCBCCC
T ss_pred             EEEEE-CCCCCCCCCcCCEeEECC
Confidence            99999 887   566666666554

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.59  E-value=9.5e-15  Score=106.38  Aligned_cols=165  Identities=14%  Similarity=0.157  Sum_probs=94.8

Q ss_pred             EEeeCCCcEEEEEEEeeC-CCCceeEEEEcCCccccc----c-----------CCceEEe--CCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEAD-PPARSFKWKFNNSGETLD----V-----------GSERFSS--GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~----~-----------~~~~~~~--~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+.+|++++|.|.+.+. +.+ .+.|++...+....    .           ...++..  ......|.|.++..+|+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B           10 ASFSLGASAKLTCTLNSQHSTY-TIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             EEEETTSCEEEEEEECGGGTTC-CEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEECCCCcEEEEEECCCCCCCc-EEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence            678899999999999988 666 89999843211100    0           0012221  334567999999999999


Q ss_pred             EEEEEEEcCCc---eEEeeEEEEEEeCCCC-CCCCcceEE-----eecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccc
Q psy11549        131 TLSCAAQNAIG---TQVTPCLYQVVLAGKP-QPPQNCSVR-----NETTSSVHISCTPGYDGGLPQT-FTLELYSASDLN  200 (261)
Q Consensus       131 ~y~C~~~~~~~---~~~~~~~~~v~~~~~p-~~p~~~~v~-----~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~  200 (261)
                      .|+|.+.+..+   .........+.|...| .+|. +.+.     ...+..++|.|.+  .+..|.. .+.|+++.....
T Consensus        89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~-~~~~~~~~~~~~~~~v~L~C~~--~g~~p~~~~v~W~k~g~~l~  165 (218)
T 3s96_B           89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPT-LTVFPPSSEELKENKATLVCLI--SNFSPSGVTVAWKANGTPIT  165 (218)
T ss_dssp             EEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCE-EEEECCCHHHHHTTEEEEEEEE--EEEBSSCCEEEEEETTEEC-
T ss_pred             EEEEEEecCCCCceeEEEcCcEEEEEecCCCCCce-EEeeCCCcccccCCcEEEEEEE--CcccCCCeEEEEEECCEECc
Confidence            99999998765   2222223344444444 2332 2221     1246889999997  3434433 333444432221


Q ss_pred             eeE---EEecCC-----CCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        201 LLV---NLTNLD-----TPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       201 ~~~---~~~~~~-----~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      ...   ......     ...+.|......++|.|  +|.|.|..|..
T Consensus       166 ~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y--~C~a~n~~~~~  210 (218)
T 3s96_B          166 QGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSF--TCQVTHEGDTV  210 (218)
T ss_dssp             -------------CEEEEEEEEEEHHHHHTCSCE--EEEEEETTEEE
T ss_pred             CceecCcccccCCcEEEEEEEEEeHHHccCCCeE--EEEEEeCCCcc
Confidence            100   000001     02255655445578999  99999998743

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.59  E-value=9.2e-16  Score=111.34  Aligned_cols=121  Identities=17%  Similarity=0.202  Sum_probs=78.6

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCc--ceeeeEEEEEE----eeceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGE--ATSNQLKLRVK----YAPICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFK   93 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~--~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~   93 (261)
                      +|.|.+++.+|+|.|+|.+.|..+.  .......|.|.    .+|.+...... ..+..|+.+.|.|.+.+. |+...+.
T Consensus        70 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~  148 (212)
T 1nfd_E           70 TLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPS-PEELRTNKATLVCLVNDFYPGSATVT  148 (212)
T ss_dssp             EEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCC-HHHHHTTEECCCEEEEEEBSSCCEEE
T ss_pred             EEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCc-hHhccCCceEEEEEEEeeECCccEEE
Confidence            8999999999999999999973222  11234566764    34444332211 123468999999999987 4424899


Q ss_pred             EEEcCCccccccCCceEEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         94 WKFNNSGETLDVGSERFSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        94 W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      |++++................    ..+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       149 W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~  201 (212)
T 1nfd_E          149 WKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET  201 (212)
T ss_dssp             EEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred             EEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence            999874211110000000111    1235889999999999999999998654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.59  E-value=4.8e-14  Score=102.30  Aligned_cols=164  Identities=16%  Similarity=0.195  Sum_probs=95.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|+.+.|.|.+.+.+.+ .+.|++...+....           ....++.  .......|.|.++..+|+|.|+|.
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3r06_A           11 LPASLGDRVTINCQASQDISN-YLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQ   89 (213)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEecCCCcEEEEEEeCCCcCc-eEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEe
Confidence            668899999999999998766 89999843211110           0112222  233455899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEEeCCCCCCCCcceEE-----eecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccce----eEEE
Q psy11549        136 AQNAIGTQVTPCLYQVVLAGKPQPPQNCSVR-----NETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNL----LVNL  205 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~-----~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~----~~~~  205 (261)
                      +.+..+..... ...+.+..++.+|.. .+.     ...+..++|.|.+  .+..| .....|+++......    ....
T Consensus        90 ~~~~~~~~~~~-~~~l~V~~~~~~p~v-~~~~~~~~~~~~~~v~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~  165 (213)
T 3r06_A           90 QYYNYPWTFGP-GTKLEIKRADAKPTV-SIFPPSSEQLGTGSATLVCFV--NNFYPKDINVKWKVDGSEKRDGVLQSVTD  165 (213)
T ss_dssp             ECSSSSCEECC-CEEEEECCCCBCCEE-EEECCCHHHHTTTEEEEEEEE--EEEBSSCEEEEEEETTEEECTTEEEEECC
T ss_pred             cccCCceEEcC-CceEEEeccCCCcee-eeeCCCceecCCCCcEEEEEE--eeecCCceEEEEEECCcccCCceEeccCc
Confidence            99875432221 223444333334432 221     1247789999997  33334 233344444322211    1111


Q ss_pred             ecCCCC------cEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        206 TNLDTP------AFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       206 ~~~~~~------~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      ......      .+.|......++|.|  +|.|.|.....
T Consensus       166 ~~~~~g~~~~~s~l~i~~~~~~d~g~Y--tC~v~n~~~~~  203 (213)
T 3r06_A          166 QDSKDSTYSLSSTLSLTKADYERHNLY--TCEVTHKTSTA  203 (213)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHTCCEE--EEEEEETTCSS
T ss_pred             eeCCCCcEEEEEEEEeCHHHhccCCeE--EEEEEecccCc
Confidence            111122      344555445578999  99999987543

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.58  E-value=2.6e-14  Score=107.50  Aligned_cols=119  Identities=17%  Similarity=0.201  Sum_probs=77.7

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeecee----------------------ecCceeEEEeeCCCcEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC----------------------KSDRIVIVGASRSESVD   78 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~----------------------~~~~~~~~~~~~g~~~~   78 (261)
                      +|.|.+++.+|+|.|+|.+.|..+......+.|.|...+..                      .........+.+|++++
T Consensus        91 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~  170 (268)
T 1x9q_A           91 TLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMK  170 (268)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEE
T ss_pred             EEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEE
Confidence            89999999999999999998875533233456777654320                      00011125688999999


Q ss_pred             EEEEEeeCCC-CceeEEEEcCCccccc------------------cCCceEEeC----CceeEEEEecCCCCcCeEEEEE
Q psy11549         79 IHCAVEADPP-ARSFKWKFNNSGETLD------------------VGSERFSSG----SRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        79 l~C~~~~~~~-~~~~~W~~~~~~~~~~------------------~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      |.|.+.+.++ ...+.|++...+....                  ....++...    .....|.|.++..+|+|.|+|.
T Consensus       171 L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  250 (268)
T 1x9q_A          171 LSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCT  250 (268)
T ss_dssp             EEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEE
Confidence            9999998764 2389999853221110                  012233322    2245799999999999999999


Q ss_pred             EEcC
Q psy11549        136 AQNA  139 (261)
Q Consensus       136 ~~~~  139 (261)
                      +.+.
T Consensus       251 a~~~  254 (268)
T 1x9q_A          251 GASY  254 (268)
T ss_dssp             EEET
T ss_pred             EccC
Confidence            9874

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.58  E-value=5.5e-15  Score=107.89  Aligned_cols=120  Identities=18%  Similarity=0.265  Sum_probs=80.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcc--eeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEA--TSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFK   93 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~--~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~   93 (261)
                      +|.|.+++.+|+|.|+|.+.+..+..  ....+.|.|..    +|.+...... ..+..|+.++|.|.+.+. |.|..+.
T Consensus        82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~  160 (220)
T 1pz5_B           82 YLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPG-CSDTSGSSVTLGCLVKGYFPEPVTVK  160 (220)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-SCCSCSSSEEEEEEEEEEBSSCCEEE
T ss_pred             EEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccc-cccCCCCcEEEEEEEEEEeCCCeEEE
Confidence            89999999999999999999875432  12346777763    3433321111 124689999999999987 6555899


Q ss_pred             EEEcCCcccc-ccCC----ceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         94 WKFNNSGETL-DVGS----ERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        94 W~~~~~~~~~-~~~~----~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      |++++..... ....    ..+.   ..+.|.|.....++ |.|+|.|.|..+....
T Consensus       161 W~~~~~~~~~~~~~~~~~~~~~~---~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  213 (220)
T 1pz5_B          161 WNYGALSSGVRTVSSVLQSGFYS---LSSLVTVPSSTWPS-QTVICNVAHPASKVDL  213 (220)
T ss_dssp             EGGGTCCTTEEECCCEEETTEEE---EEEEEEECGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             EecCCcccceEEcCCcccCCeEE---EEEEEEEcchhcCC-ceEEEEEEECCccEee
Confidence            9987642110 0110    1111   13468888888766 9999999999886554

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.58  E-value=2e-14  Score=108.27  Aligned_cols=200  Identities=14%  Similarity=0.095  Sum_probs=93.6

Q ss_pred             CCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-
Q psy11549         27 VSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-  105 (261)
Q Consensus        27 ~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-  105 (261)
                      .++.|.+.|.|.+.+..|.. .....+.|..+|      .. +.+..|++++|.|.+.+ +.+ .+.|++...+..... 
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~-~~~~~~~v~~~p------~~-v~v~~G~~v~L~C~~~~-~~~-~v~W~k~~~~~~~~~~   72 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGS-GGGGGMKVIQTP------RY-LVKGQGQKAKMRCIPEK-GHP-VVFWYQQNKNNEFKFL   72 (270)
T ss_dssp             --------------------------CCCEEEC------SE-EEEETTSCEEEEEECCT-TCC-EEEEEEECTTCCEEEE
T ss_pred             chhhhHHHHHHHHhccCCcc-ccccceeEEeCC------Ce-EEEcCCCCEEEEEEecC-CCc-eEEEEEECCCCCcEEE
Confidence            46789999999998887654 223334443333      12 66789999999999865 444 899998432211100 


Q ss_pred             ----C----------CceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCCc----eEEeeEEEEEEeCC-CCCCCCcc
Q psy11549        106 ----G----------SERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAIG----TQVTPCLYQVVLAG-KPQPPQNC  163 (261)
Q Consensus       106 ----~----------~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~----~~~~~~~~~v~~~~-~p~~p~~~  163 (261)
                          .          ..++..   ......|.|.++..+|+|.|.|.+.+...    .......+.+.... .+.+|. +
T Consensus        73 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~-v  151 (270)
T 3qib_D           73 INFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPE-V  151 (270)
T ss_dssp             EEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCE-E
T ss_pred             EEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCc-e
Confidence                0          003322   23356899999999999999999996421    22222234443211 222332 2


Q ss_pred             eEEe------ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEEEe--------cCCCC------cEEEcCCCCCC
Q psy11549        164 SVRN------ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLT--------NLDTP------AFTLEDLGLDG  222 (261)
Q Consensus       164 ~v~~------~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~--------~~~~~------~~~i~~~~l~~  222 (261)
                      .+..      ..|..++|.|.+  .+..|.. .+.|+++...........        .....      .+.|.....++
T Consensus       152 ~~~~~~~~~~~~g~~v~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d  229 (270)
T 3qib_D          152 AVFEPSEAEISHTQKATLVCLA--TGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQN  229 (270)
T ss_dssp             EEEECCHHHHHHHSEEEEEEEE--EEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHS
T ss_pred             EEECCCccccccCCceEEEEEe--cceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhcc
Confidence            2221      138899999997  3434433 333444322211111100        00122      23555532334


Q ss_pred             -ccEEEEEEEEEcCCCcCCc
Q psy11549        223 -TVLMRVVISGVNAKGRSLP  241 (261)
Q Consensus       223 -~~~Y~~~~~a~N~~G~~~~  241 (261)
                       +|.|  +|.|.|.....+.
T Consensus       230 ~~g~Y--tC~v~~~~l~~~~  247 (270)
T 3qib_D          230 PRNHF--RCQVQFYGLSEND  247 (270)
T ss_dssp             TTCEE--EEEEEECCBCTTS
T ss_pred             CCCeE--EEEEEecCCCCcc
Confidence             8899  9999998775543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.58  E-value=7.3e-15  Score=106.45  Aligned_cols=120  Identities=15%  Similarity=0.186  Sum_probs=79.4

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFKWK   95 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~   95 (261)
                      +|.|.+++.+|+|.|+|.+.|.. .. ...+.|.|..    +|.+...... ..+..|+.++|.|.+.+. |.|..+.|+
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~-~~-~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~  155 (210)
T 3d9a_H           79 YLDLNSVTTEDTATYYCANWDGD-YW-GQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWN  155 (210)
T ss_dssp             EEEECSCCGGGCEEEEEEETTSS-CB-CCCEEEEECCCCCBCCEEEEECCT-TSCCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             EEEECCCCcccCEEEEEEEecCc-cc-ccceEEEeccCCCCCCEEEEecCC-cccccCCcEEEEEEEeeEecCCcEEEEe
Confidence            89999999999999999998863 11 2335677763    3333311111 124589999999999987 555589999


Q ss_pred             EcCCccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         96 FNNSGETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +++....... .......+   ..+.|.|..+..+| |.|+|.|.|..+....
T Consensus       156 ~~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~  206 (210)
T 3d9a_H          156 SGSLSSGVHT-FPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKV  206 (210)
T ss_dssp             GGTBCTTEEE-CCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEE
T ss_pred             eCCcccceEE-cCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            8764211111 11111111   13468888888877 9999999998876543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.58  E-value=3.1e-14  Score=103.23  Aligned_cols=164  Identities=13%  Similarity=0.116  Sum_probs=97.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCC--CceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPP--ARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+..|+.++|.|.+.+.+.  ...+.|++++.+....           ....++.  .......|.|.++..+|+|.|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (212)
T 1q0x_L           10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYF   89 (212)
T ss_dssp             EEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             EeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEEE
Confidence            66789999999999998774  2379999864222110           0112332  2334558999999999999999


Q ss_pred             EEEEcCCceEEeeEEEEEEeCCCC-CCCCcceEEe-----ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE---
Q psy11549        134 CAAQNAIGTQVTPCLYQVVLAGKP-QPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV---  203 (261)
Q Consensus       134 C~~~~~~~~~~~~~~~~v~~~~~p-~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~---  203 (261)
                      |.+.+..+..... ...+.+...+ .+|. +.+..     ..+..++|.|.+  .+..|.. .+.|+++........   
T Consensus        90 C~~~~~~~~~~~~-~~~l~V~~~~~~~P~-v~~~~~~~~~~~g~~v~L~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~  165 (212)
T 1q0x_L           90 CALWSNNKLVFGG-GTKLTVLGQPKSSPT-VTLFPPSSEELSTAKATLVCTI--TDFYPGVVTVDWKVDGTPVTAGMETT  165 (212)
T ss_dssp             EEEECSSCEEECC-CEEEEECCSCCBCCE-EEEECCCHHHHTTTEEEEEEEE--EEEBSSCCEEEEEETTEEECTTEEEC
T ss_pred             EEEecCchhhcCC-CeEEEEecCCCCCCe-eEEeCCCHHHccCCcEEEEEEE--EEEeCCCeEEEEEECCEeCCCCeecC
Confidence            9999976542211 2234443333 2332 22221     247899999997  3434432 334444322111000   


Q ss_pred             EEecCCC------CcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        204 NLTNLDT------PAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       204 ~~~~~~~------~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      .......      ..+.|..+...|.|.|  +|.|.|..+.
T Consensus       166 ~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y--~C~a~n~~~~  204 (212)
T 1q0x_L          166 QPSKQSNNKYMASSYLTLTARAWERHSSY--SCQVTHEGHS  204 (212)
T ss_dssp             CCEECTTSCEEEEEEEEEEHHHHTTCCEE--EEEEEETTEE
T ss_pred             CceeCCCCCEEEEEEEEEcHHHccCCCcE--EEEEEeCCcc
Confidence            0111111      2467777667889999  9999998753

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.57  E-value=2.8e-14  Score=103.42  Aligned_cols=162  Identities=12%  Similarity=0.140  Sum_probs=95.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|.+.  +.+ .+.|++...+....  .         ...++.  .......|.|.++..+|+|.|+|.
T Consensus        10 ~~v~~G~~v~L~C~~~--~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L           10 ASGSPGQSITISCTGT--SNN-FVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEECTTCEEEEEEECC--CSS-CEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             EEEcCCCCEEEEEEEC--CCC-eEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            7788999999999998  555 89999853221110  0         112222  234456899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEEeCCCC-CCCCcceEEe-----ecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccce--eE-EE
Q psy11549        136 AQNAIGTQVTPCLYQVVLAGKP-QPPQNCSVRN-----ETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNL--LV-NL  205 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~~~~~p-~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~--~~-~~  205 (261)
                      +.+..+.........+.+...+ .+|. +.+..     ..|..++|.|.+  .+..| .....|+++......  .. ..
T Consensus        87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~-v~~~~~~~~~~~g~~v~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~  163 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVLGQPKAAPS-VTLFPPSSEELQANKATLVCLI--SDFYPGAVTVAWKADSSPVKAGVETTTP  163 (211)
T ss_dssp             EEETTTEEEECCCEEEEECCSCCBCCE-EEEECCCHHHHHTTCEEEEEEE--EEEBSSCCEEEEEETTEEECTTEEECCC
T ss_pred             EecCCCceeECCCceEEEeCCCCcCCe-eEecCCchhhhcCCCeEEEEEe--eeecCCCeEEEEEECCeecCCCcccCCc
Confidence            9998772112113344444333 2332 22221     248999999997  33333 223334444322110  00 00


Q ss_pred             ecCCC------CcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        206 TNLDT------PAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       206 ~~~~~------~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      .....      ..+.|..+..++.|.|  +|.|.|..|.
T Consensus       164 ~~~~~~~~~~~s~L~i~~~~~~d~g~Y--~C~v~~~~~~  200 (211)
T 3tv3_L          164 SKQSNNKYAASSYLSLTPEQWKSHRSY--SCQVTHEGST  200 (211)
T ss_dssp             EECTTSSEEEEEEEEECHHHHHHSSCE--EEEEEETTEE
T ss_pred             eECCCCCEEEEEEEEEcHHHhCCCCeE--EEEEEECCCC
Confidence            11111      3466766555679999  9999998864

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.57  E-value=2.5e-13  Score=100.35  Aligned_cols=161  Identities=17%  Similarity=0.161  Sum_probs=96.2

Q ss_pred             EEeeCCCcEEEEEEEeeCC---CCceeEEEEcCCccccc--c---------CCceEEe--CCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADP---PARSFKWKFNNSGETLD--V---------GSERFSS--GSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~~~~~--~---------~~~~~~~--~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+.+|++++|.|.+.+.+   ....+.|+++..+....  .         ...++..  ......|.|.++..+|+|.|
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   90 (240)
T 1moe_A           11 LAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATY   90 (240)
T ss_dssp             EEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEEE
Confidence            6678999999999999887   23389999864221110  0         1122222  23445799999999999999


Q ss_pred             EEEEEcCCce-EEeeEEEEEEeCCCCC--CCCc-----ceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeC-Cccce-
Q psy11549        133 SCAAQNAIGT-QVTPCLYQVVLAGKPQ--PPQN-----CSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSA-SDLNL-  201 (261)
Q Consensus       133 ~C~~~~~~~~-~~~~~~~~v~~~~~p~--~p~~-----~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~-~~~~~-  201 (261)
                      +|.+.+..+. ......+.|.  .++.  +|..     ..+....|+.++|.|.+  .+..+ ...+.|++.. +.... 
T Consensus        91 ~C~~~n~~~~~~~~~~~l~V~--~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~--~g~p~~~~~v~W~k~~~g~~~~~  166 (240)
T 1moe_A           91 YCQQTNEDPYTFGGGTKLEIK--GGGSGGGGEVQLQQSGAELVEPGASVKLSCTA--SGFNIKDTYMHWVKQRPEQGLEW  166 (240)
T ss_dssp             EEEECSSSSCCBCCCEEEEEC--CCSCCCCCCCEEEECCCEEECTTCCEEEEEEE--ESSCGGGSCEEEEEECTTSCCEE
T ss_pred             EEEEccCCceeecCCEEEEEe--cCCCCCCceEEEeCCCceEEeCCCcEEEEEEE--cCccCCCCEEEEEEECCCCCcEE
Confidence            9999997543 2222234443  3321  1110     11233569999999997  33322 2234444432 11110 


Q ss_pred             -------------------eEEEe---cCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        202 -------------------LVNLT---NLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       202 -------------------~~~~~---~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                                         .+...   ......|.|.+++.+|+|.|  .|.|.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~~~  220 (240)
T 1moe_A          167 IGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVY--YCAPFGY  220 (240)
T ss_dssp             EEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE--EEEECST
T ss_pred             EEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEE--EEEEEec
Confidence                               11111   12224699999999999999  8888743

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.57  E-value=2.5e-14  Score=104.57  Aligned_cols=165  Identities=15%  Similarity=0.147  Sum_probs=97.4

Q ss_pred             EEeeCCCcEEEEEEEeeCC--CCceeEEEEcCCccccc------------------cCCceEEeC----CceeEEEEecC
Q psy11549         69 VGASRSESVDIHCAVEADP--PARSFKWKFNNSGETLD------------------VGSERFSSG----SRGSMLRYTPV  124 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~~------------------~~~~~~~~~----~~~~~l~i~~~  124 (261)
                      +.+..|+.++|.|.+.+.+  .+ .+.|++...+....                  ....++...    .....|.|.++
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (222)
T 1q9r_B           10 GLVQSGGSLRLSCATSGFTFTDY-YMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL   88 (222)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             eeEcCCCEEEEEEEecCccCCCC-cEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence            4577999999999999765  34 79999864221110                  001233322    23558999999


Q ss_pred             CCCcCeEEEEEEEcCCc-----eEEeeEEEEEEeCCCCCCCCcceEE----eecCCeEEEEeecCCCCCCCeE-EEEEEE
Q psy11549        125 TELDYGTLSCAAQNAIG-----TQVTPCLYQVVLAGKPQPPQNCSVR----NETTSSVHISCTPGYDGGLPQT-FTLELY  194 (261)
Q Consensus       125 ~~~d~g~y~C~~~~~~~-----~~~~~~~~~v~~~~~p~~p~~~~v~----~~~~~~~~l~c~~~~~~~~p~~-~~~~~~  194 (261)
                      ..+|+|.|.|.+.+..+     .......+.|.+ .++.+|......    ...|+.++|.|.+  .+..|.. .+.|++
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~  165 (222)
T 1q9r_B           89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSA-AKTTPPSVYPLAPGSAAQTNSMVTLGCLV--KGYFPEPVTVTWNS  165 (222)
T ss_dssp             CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS-SCCBCCEEEEECCCSCCCCSSEEEEEEEE--EEEBSSCCEEEEGG
T ss_pred             CcccCeEEEEEEeccCCcccceEeCCceEEEecc-CCCCCCeEEEccccccccCCCcEEEEEEE--ccEECCCCEEEEec
Confidence            99999999999998653     122222444443 122333221111    1358999999997  3433533 334444


Q ss_pred             eCCccce-eE-EEecC----CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549        195 SASDLNL-LV-NLTNL----DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       195 ~~~~~~~-~~-~~~~~----~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      ....... .. .....    ....|.|..+...+ |.|  +|.|.|..|...
T Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y--~C~a~n~~~~~~  214 (222)
T 1q9r_B          166 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETV--TCNVAHPASSTK  214 (222)
T ss_dssp             GTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCC--EEEEEEGGGTEE
T ss_pred             CCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeE--EEEEEccCCCCc
Confidence            4322111 11 11111    11357888866778 999  999999998643

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.57  E-value=3.6e-14  Score=101.58  Aligned_cols=123  Identities=15%  Similarity=0.110  Sum_probs=83.1

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC-C---ceeEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP-A---RSFKW   94 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~---~~~~W   94 (261)
                      +..|.|.+++.+|+|.|.|.|.|..+.. +..+.|+|..+|.......  ..+..|+.+ |.|.+.+.++ +   +++.|
T Consensus        58 ~~~L~I~~v~~~d~G~Y~C~a~n~~~~~-~~~~~ltV~~~P~~~~i~~--~~~~~g~~~-l~C~a~g~~P~~~~~lti~W  133 (210)
T 1gsm_A           58 RSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTVQLLVYAFPNQLTVSP--AALVPGDPE-VACTAHKVTPVDPNALSFSL  133 (210)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCSEEEEES--SSBCTTCCE-EEEEEEEEBCCCTTTEEEEE
T ss_pred             ccEEEECccCcccCceEEEEEEeCCCce-EEEEEEEEEecCCCcEEcc--ceEEeCCce-EEEEeCCCCCCCCCCcEEEE
Confidence            4589999999999999999999987765 7789999998886543222  145578888 9999998644 2   48999


Q ss_pred             EEcCCccccccC-CceEE-----e---CC----ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         95 KFNNSGETLDVG-SERFS-----S---GS----RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        95 ~~~~~~~~~~~~-~~~~~-----~---~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ++++........ .....     .   ..    -.+.+.+.....++.+.|+|.|.+.......
T Consensus       134 lk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~~~  197 (210)
T 1gsm_A          134 LVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGLEL  197 (210)
T ss_dssp             EETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTEEE
T ss_pred             EECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCCcc
Confidence            998753211000 00110     0   00    1223444477777778999999987544433

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.57  E-value=4.6e-14  Score=103.00  Aligned_cols=123  Identities=19%  Similarity=0.223  Sum_probs=81.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCc--ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CC-Cce
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGE--ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PP-ARS   91 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~--~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~~   91 (261)
                      .+|+|.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+.... . ..+..|+.++|.|.+.+. |. +..
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~-~~~~~g~~v~L~C~~~g~~P~~~~~  156 (220)
T 2fbj_H           79 LYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-L-PPALSSDPVIIGCLIHDYFPSGTMN  156 (220)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-C-CSSSCCSSEEEEEEEEEEBSCCCEE
T ss_pred             EEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-c-ccccCCCcEEEEEEEEeEECCCcEE
Confidence            38999999999999999999987543  112346788864    23332211 1 234689999999999987 54 358


Q ss_pred             eEEEEcCCccccccCCceEEeCCc---eeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         92 FKWKFNNSGETLDVGSERFSSGSR---GSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        92 ~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      +.|++++...............+.   .+.|.|.....+|.|.|+|.|.|..+...
T Consensus       157 v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          157 VTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             EEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence            999998743211101000001111   23588888888899999999999887654

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.57  E-value=2.1e-15  Score=111.17  Aligned_cols=120  Identities=19%  Similarity=0.243  Sum_probs=79.5

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCc--ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeCCCC-ceeE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGE--ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEADPPA-RSFK   93 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~--~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~   93 (261)
                      +|.|.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+...... .....|+.++|.|.+.+.+++ ..+.
T Consensus        92 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~  170 (234)
T 2j6e_L           92 SLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPS-SEELQANKATLVCLISDFFPGAVTVA  170 (234)
T ss_dssp             EEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCC-HHHHTTSCCCEEECCCBCSSCCCEEE
T ss_pred             EEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCC-hhHhcCCceEEEEEEEEEcCCceEEE
Confidence            8999999999999999999998772  223345666642    3333211111 112368899999999986543 4899


Q ss_pred             EEEcCCccccccCCc--eEEe-C----CceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         94 WKFNNSGETLDVGSE--RFSS-G----SRGSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        94 W~~~~~~~~~~~~~~--~~~~-~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      |++++..  +.....  .... .    ...+.|.|..+..+|.|.|+|.|.|.....
T Consensus       171 W~k~g~~--l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~  225 (234)
T 2j6e_L          171 WKADGAP--VKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV  225 (234)
T ss_dssp             EEETTEE--CCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred             EEECCEE--CCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence            9998742  211110  0000 1    123468889999999999999999986653

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.57  E-value=1.1e-13  Score=101.91  Aligned_cols=165  Identities=13%  Similarity=0.145  Sum_probs=98.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|+++.|.|.+.+.+.+ .+.|++...+....           ....++.  .......|.|.++..+|+|.|+|.
T Consensus        34 ~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  112 (237)
T 3sob_L           34 LSASVGDRVTITCRASQDVST-AVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQ  112 (237)
T ss_dssp             EEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEeCCCcEEEEEecCCCCCc-eEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEe
Confidence            678899999999999988666 89999854221110           0112222  233456899999999999999999


Q ss_pred             EEcCCceEE-eeEEEEEEeCCCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccce----eEE
Q psy11549        136 AQNAIGTQV-TPCLYQVVLAGKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNL----LVN  204 (261)
Q Consensus       136 ~~~~~~~~~-~~~~~~v~~~~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~----~~~  204 (261)
                      +.+..+... ....+.|.  ..+.+|.. .+..     ..+..++|.|.+  .+..| ...+.|+++......    ...
T Consensus       113 ~~~~~~~~~~~~~~l~V~--~~~~~p~v-~~~~~~~~~~~g~~v~l~C~~--~~~~p~~~~v~W~k~g~~~~~~~~~~~~  187 (237)
T 3sob_L          113 QSYTTPPTFGQGTKVEIK--RTVAAPSV-FIFPPSDEQLKSGTASVVCLL--NNFYPREAKVQWKVDNALQSGNSQESVT  187 (237)
T ss_dssp             ECSSSSCEECCCEEEEEE--CCCBCCEE-EEECCCHHHHHHTEEEEEEEE--EEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred             eccCCceEEcCcEEEEEe--cCCCCCce-EEeCCChhhccCCceEEEEEE--cccCCCceEEEEEECCCCCCCceeeccc
Confidence            988664322 22233333  33434432 2211     237789999997  44344 233344444322211    111


Q ss_pred             EecCCC------CcEEEcCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549        205 LTNLDT------PAFTLEDLGLDGTVLMRVVISGVNAKGRSLP  241 (261)
Q Consensus       205 ~~~~~~------~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~  241 (261)
                      ......      ..+.|.....+++|.|  +|.|.|.......
T Consensus       188 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y--~C~a~n~~~~~~~  228 (237)
T 3sob_L          188 EQDSKDSTYSLSSTLTLSKADYEKHKVY--ACEVTHQGLSSPV  228 (237)
T ss_dssp             CCCTTTCCEEEEEEEEEEHHHHTTCCEE--EEEEECTTCSSCE
T ss_pred             ccccCCCcEEEEEEEEEcHHHccCCCcE--EEEEeeCCCCCce
Confidence            111111      2355666557789999  9999999875543

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.56  E-value=2.5e-15  Score=109.04  Aligned_cols=164  Identities=15%  Similarity=0.147  Sum_probs=94.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|+.++|.|.+.+.+.+ .+.|++...+....           ....++.  .......|.|.++..+|+|.|+|.
T Consensus         9 ~~v~~G~~v~L~C~~~~~~~~-~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   87 (212)
T 1nfd_E            9 ASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL   87 (212)
T ss_dssp             EEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred             EEEeCCCcEEEEEecCCCCCC-eEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEE
Confidence            668899999999998777666 79999864322210           0012232  233455899999999999999999


Q ss_pred             EEcC-CceEEeeEEEEEEeCCCC-CCCCcceE-----EeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeE---E
Q psy11549        136 AQNA-IGTQVTPCLYQVVLAGKP-QPPQNCSV-----RNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLV---N  204 (261)
Q Consensus       136 ~~~~-~~~~~~~~~~~v~~~~~p-~~p~~~~v-----~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~---~  204 (261)
                      +.+. .+.........+.+...+ .+|. +.+     ....|..++|.|.+  .+..|. ..+.|+++........   .
T Consensus        88 ~~n~~~~~~~~~~~~~l~V~~~~~~~p~-v~~~~~~~~~~~g~~v~L~C~~--~g~~p~~~~v~W~k~g~~~~~~~~~~~  164 (212)
T 1nfd_E           88 SSYGDNNDLVFGSGTQLTVLRGPKSSPK-VTVFPPSPEELRTNKATLVCLV--NDFYPGSATVTWKANGATINDGVKTTK  164 (212)
T ss_dssp             EEETTTTEEEECCCEEEEEECCCCBCCE-EECCCCCHHHHHTTEECCCEEE--EEEBSSCCEEEEEETTEEECSSCBCCC
T ss_pred             EEcccCcccccCCceEEEEccCCCCCCE-EEeeCCchHhccCCceEEEEEE--EeeECCccEEEEEECCeEcCCCeecCC
Confidence            9962 222111112223332222 1221 111     01348899999997  444343 3334444322111000   0


Q ss_pred             EecCC-----CCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        205 LTNLD-----TPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       205 ~~~~~-----~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      .....     ...|.|.++..+|+|.|  +|.|.|..+.
T Consensus       165 ~~~~~~~~~~~s~L~i~~~~~~d~G~Y--~C~a~n~~~~  201 (212)
T 1nfd_E          165 PSKQGQNYMTSSYLSLTADQWKSHNRV--SCQVTHEGET  201 (212)
T ss_dssp             CBCSSSCEEEEEBCCEEHHHHHTCSCE--EEEEECTTTT
T ss_pred             ceecCCCceEEEEEEEchhhcCCCCeE--EEEEEeCCce
Confidence            00011     12366777667889999  9999999875

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.56  E-value=2.5e-13  Score=101.27  Aligned_cols=163  Identities=13%  Similarity=0.069  Sum_probs=96.0

Q ss_pred             EEeeCCCcEEEEEEEeeCC--CCceeEEEEcCCccccc-c---------------CCceEEe----CCceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVEADP--PARSFKWKFNNSGETLD-V---------------GSERFSS----GSRGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~~-~---------------~~~~~~~----~~~~~~l~i~~~~~  126 (261)
                      +.+.+|++++|.|.+.+.+  .+ .+.|++...+.... +               ...++..    ......|.|.++..
T Consensus        11 ~~v~~G~~v~L~C~~~g~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   89 (253)
T 3uzq_A           11 ELVKPGASVRLSCTASGFNIKDT-YMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTS   89 (253)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGS-CEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eeecCCCcEEEEEEeeCCcccCc-eEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCc
Confidence            5678999999999998754  34 79999832211110 0               0112222    22355699999999


Q ss_pred             CcCeEEEEEEEcCCceEE-eeEEEEEEeC----------CCCCCCCc----ceEEeecCCeEEEEeecCCCCCCCeE---
Q psy11549        127 LDYGTLSCAAQNAIGTQV-TPCLYQVVLA----------GKPQPPQN----CSVRNETTSSVHISCTPGYDGGLPQT---  188 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~~~~-~~~~~~v~~~----------~~p~~p~~----~~v~~~~~~~~~l~c~~~~~~~~p~~---  188 (261)
                      +|+|.|+|.+.+..+... ....+.|...          ....+|..    ..+....|+.++|.|.+  .+ .+..   
T Consensus        90 ~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~--~~-~~~~~~~  166 (253)
T 3uzq_A           90 GDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRA--SE-NVDRYGN  166 (253)
T ss_dssp             GGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEE--SS-CCEETTE
T ss_pred             ccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEe--cC-ccccCCC
Confidence            999999999998654432 2223333321          00111111    12334579999999997  33 3432   


Q ss_pred             -EEEEEEeCC-ccce---------------eEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        189 -FTLELYSAS-DLNL---------------LVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       189 -~~~~~~~~~-~~~~---------------~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                       .+.|++... ....               .+.. .......|+|.+++.+|+|.|  .|.|.|..+
T Consensus       167 ~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~~~n~~~  231 (253)
T 3uzq_A          167 SFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATY--FCQRSNEVP  231 (253)
T ss_dssp             ECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE--EEEECSSSS
T ss_pred             cEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEE--EEEEccCCC
Confidence             445555321 1111               1110 111223599999999999999  899988653

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.56  E-value=2.1e-13  Score=101.80  Aligned_cols=161  Identities=9%  Similarity=0.084  Sum_probs=95.5

Q ss_pred             EEeeCCCcEEEEEEEeeC--CCCceeEEEEcCCccccc----------------cCCceEEe----CCceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVEAD--PPARSFKWKFNNSGETLD----------------VGSERFSS----GSRGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~----------------~~~~~~~~----~~~~~~l~i~~~~~  126 (261)
                      +.+.+|++++|.|.+.+.  +.+ .+.|++...+....                ....++..    ......|.|.++..
T Consensus        16 ~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   94 (256)
T 3juy_B           16 EVKKPGASVKVSCQASGYRFSHF-TVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   94 (256)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceecCCCeEEEEEEeecccccCc-eEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEEEEEECCCCc
Confidence            678899999999999884  334 79999743221110                00123332    23355799999999


Q ss_pred             CcCeEEEEEEEcC------------CceEEeeEEEEEEeCCCCC------------CCC----cceEEeecCCeEEEEee
Q psy11549        127 LDYGTLSCAAQNA------------IGTQVTPCLYQVVLAGKPQ------------PPQ----NCSVRNETTSSVHISCT  178 (261)
Q Consensus       127 ~d~g~y~C~~~~~------------~~~~~~~~~~~v~~~~~p~------------~p~----~~~v~~~~~~~~~l~c~  178 (261)
                      +|+|.|.|.+.+.            .........  +.|...+.            +|.    ...+....|+.++|.|.
T Consensus        95 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~--l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  172 (256)
T 3juy_B           95 ADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTT--VIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCR  172 (256)
T ss_dssp             GGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEE--EEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEEE
T ss_pred             ccCEEEEEeEEeccccccccccccceeEECCceE--EeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEEE
Confidence            9999999999986            222222223  34433322            111    11233457999999999


Q ss_pred             cCCCCCCCeEEEEEEEeC-Cccce---------------eEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        179 PGYDGGLPQTFTLELYSA-SDLNL---------------LVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       179 ~~~~~~~p~~~~~~~~~~-~~~~~---------------~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      +  .+..+.....|++.. +....               .+.. .......|+|.+++.+|.|.|  .|.|.|..
T Consensus       173 ~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~~~~~~  243 (256)
T 3juy_B          173 S--SHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALY--YCQVYGAS  243 (256)
T ss_dssp             E--SSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEE--EEEECCSS
T ss_pred             E--CCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEE--EEEEeeCC
Confidence            7  333321333444432 22111               1100 111224599999999999999  88898843

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.56  E-value=1.7e-13  Score=103.90  Aligned_cols=159  Identities=10%  Similarity=0.100  Sum_probs=95.8

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----------------cCCceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----------------VGSERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----------------~~~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +.+.+|++++|.|.+.+.+ +...+.|++...+....                ....++..    ......|.|.++..+
T Consensus        36 ~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  115 (282)
T 1qok_A           36 ELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSE  115 (282)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChh
Confidence            5678999999999998875 22379999865322110                01123332    223568999999999


Q ss_pred             cCeEEEEEEEcCCc---eEE--eeEEEEEEeCCCCC------------CCC----cceEEeecCCeEEEEeecCCCCCCC
Q psy11549        128 DYGTLSCAAQNAIG---TQV--TPCLYQVVLAGKPQ------------PPQ----NCSVRNETTSSVHISCTPGYDGGLP  186 (261)
Q Consensus       128 d~g~y~C~~~~~~~---~~~--~~~~~~v~~~~~p~------------~p~----~~~v~~~~~~~~~l~c~~~~~~~~p  186 (261)
                      |+|.|.|.+.+..|   ...  ....+.|.  .+|.            ++.    ...+....|+.++|.|.+  .+ .|
T Consensus       116 DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~--~~-~~  190 (282)
T 1qok_A          116 DTAVYYCNEGTPTGPYYFDYWGQGTTVTVS--SGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSA--SS-SV  190 (282)
T ss_dssp             GCEEEEEEEECSSSSCCCEEECCCEEEEEE--C---------------CCCEEEECSEEEECTTCCEEEEEEE--SS-CC
T ss_pred             hCEEEEEEeccCCCccceeeeCCCEEEEEe--cCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEe--cC-CC
Confidence            99999999999865   111  22233333  3321            111    112334579999999997  22 23


Q ss_pred             eEEEEEEEe-CCccce---------------eEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        187 QTFTLELYS-ASDLNL---------------LVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       187 ~~~~~~~~~-~~~~~~---------------~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                       ....|++. .+....               .+.. .......|+|.+++.+|.|.|  .|.|.|.
T Consensus       191 -~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~a~~~  253 (282)
T 1qok_A          191 -SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATY--YCQQRSS  253 (282)
T ss_dssp             -SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE--EEEECSS
T ss_pred             -ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEE--EEEEeeC
Confidence             33445553 222110               1111 112234699999999999999  8888875

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.56  E-value=1.2e-13  Score=100.65  Aligned_cols=167  Identities=15%  Similarity=0.164  Sum_probs=95.1

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----------------cCCceEEeC----CceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----------------VGSERFSSG----SRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----------------~~~~~~~~~----~~~~~l~i~~~~~~  127 (261)
                      +.+..|++++|.|.+.+.+ +...+.|+++..+....                ....++...    .....|.|.++..+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (219)
T 1c1e_H           10 ELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNE   89 (219)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCcc
Confidence            5678999999999999875 22389999874222111                011233321    23468999999999


Q ss_pred             cCeEEEEEEEcCCceE--EeeEEEEEEeCCC-CCCCCcceE----EeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcc
Q psy11549        128 DYGTLSCAAQNAIGTQ--VTPCLYQVVLAGK-PQPPQNCSV----RNETTSSVHISCTPGYDGGLPQT-FTLELYSASDL  199 (261)
Q Consensus       128 d~g~y~C~~~~~~~~~--~~~~~~~v~~~~~-p~~p~~~~v----~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~  199 (261)
                      |+|.|+|.+.+..+..  .......+.+... +.+|.....    ....|+.+.|.|.+  .+..|.. .+.|+++....
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~g~~~  167 (219)
T 1c1e_H           90 DMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLV--KGYFPEPVTVTWNSGSLSS  167 (219)
T ss_dssp             GCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEE--EEEBSSCCEEEEGGGTBCT
T ss_pred             cCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEc--ccccCCCeEEEEEeCCccc
Confidence            9999999999876311  1111223344332 233322111    11358999999997  3434543 33444443221


Q ss_pred             ce-eE-EEecCC----CCcEEEcCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549        200 NL-LV-NLTNLD----TPAFTLEDLGLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       200 ~~-~~-~~~~~~----~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      .. .. ......    ...+.|..... +.|.|  +|.|.|..|...
T Consensus       168 ~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y--~C~a~n~~~~~~  211 (219)
T 1c1e_H          168 GVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETV--TCNVAHPASSTK  211 (219)
T ss_dssp             TEEECCCEESSSCEEEEEEEEEESSST-TTSCC--EEEEEEGGGTEE
T ss_pred             ceEecCCcccCCeEEEEEEEEEecccC-CCCEE--EEEEEeCCCCcc
Confidence            10 11 111111    12567755333 55999  999999988543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.55  E-value=7e-14  Score=102.92  Aligned_cols=165  Identities=12%  Similarity=0.127  Sum_probs=97.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCc-eeEEEEcCCccccc-----------cCCceEEe--CCceeEEEEecCCCCcCeEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPAR-SFKWKFNNSGETLD-----------VGSERFSS--GSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~-----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +.+..|++++|.|.+.+.+++. .+.|+++..+....           ....++..  ......|.|.++..+|+|.|+|
T Consensus        29 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C  108 (234)
T 2j6e_L           29 ASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYYC  108 (234)
T ss_dssp             CCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEEE
T ss_pred             EEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEEE
Confidence            5678999999999998865432 69999864322110           01123322  2345589999999999999999


Q ss_pred             EEEcCCceE-EeeEEEEEEeCCCC-CCCCcceEEe-----ecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeEE--
Q psy11549        135 AAQNAIGTQ-VTPCLYQVVLAGKP-QPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLVN--  204 (261)
Q Consensus       135 ~~~~~~~~~-~~~~~~~v~~~~~p-~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~~--  204 (261)
                      .+.+..+.. .......+.|...| .+|. +.+..     ..|..++|.|.+  .+..|. ..+.|+++.........  
T Consensus       109 ~~~~~~~~~~~~~~~~~l~V~~~~~~~p~-v~~~~~~~~~~~g~~v~L~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~  185 (234)
T 2j6e_L          109 ATWDDSLSAVIFGGGTKLTVLGQPKAAPS-VTLFPPSSEELQANKATLVCLI--SDFFPGAVTVAWKADGAPVKAGVETT  185 (234)
T ss_dssp             EEEETTTTEEEECCCBCCCBCCCCCCCCC-CCEECCCHHHHTTSCCCEEECC--CBCSSCCCEEEEEETTEECCSSEEEC
T ss_pred             EEEcCCcceeEecCCEEEEEecCCCCCCc-ccccCCChhHhcCCceEEEEEE--EEEcCCceEEEEEECCEECCCCcccc
Confidence            999987621 11112234443333 2332 22221     247799999997  444454 23344444322111110  


Q ss_pred             -EecC------CCCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        205 -LTNL------DTPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       205 -~~~~------~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                       ....      ....+.|..+..+|+|.|  +|.|.|..+.
T Consensus       186 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y--~C~a~n~~~~  224 (234)
T 2j6e_L          186 KPSKQSNNKYAASSYLSLTPEQWKSHRSY--SCQVTHEGST  224 (234)
T ss_dssp             CCCCCTTSCCBCCEEECCCGGGTTTSCCE--EEEEEBTTBC
T ss_pred             CceECCCCCEEEEEEEEECHHHcCCCCeE--EEEEEeCCCc
Confidence             0101      113477777778899999  9999999875

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.55  E-value=1.6e-15  Score=111.72  Aligned_cols=119  Identities=16%  Similarity=0.185  Sum_probs=68.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe---eceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY---APICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWK   95 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~---~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~   95 (261)
                      .+|.|.+++.+|+|.|+|.+.|..+........|.|..   +|.+...... .....|+.++|.|.+.+.++ +..+.|+
T Consensus        93 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~  171 (233)
T 3bqu_C           93 FVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWK  171 (233)
T ss_dssp             EEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEE
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCC-HHhhcCCceEEEEEEccccCCceEEEEE
Confidence            38999999999999999999887654323334566654   3443321111 11236899999999998654 3479999


Q ss_pred             EcCCccccccC-Cce--EEe-CC----ceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         96 FNNSGETLDVG-SER--FSS-GS----RGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        96 ~~~~~~~~~~~-~~~--~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +++..  +... ...  ... .+    ..+.|.|.....+|.|.|+|.|.|...
T Consensus       172 k~g~~--~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  223 (233)
T 3bqu_C          172 IDGSE--RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS  223 (233)
T ss_dssp             EC-------CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred             ECCee--CCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            98742  2111 000  001 11    124688888888999999999998643

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.55  E-value=1.5e-13  Score=87.15  Aligned_cols=92  Identities=16%  Similarity=0.222  Sum_probs=67.4

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCC-ce-EEeCCceeEEEEecCCCCcCeEEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ER-FSSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~-~~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      .+|.+...+.. +.+..|+.+.|.|.+.+.|.+ .+.|++++..  +.... .. .........|.|.++..+|+|.|+|
T Consensus         4 ~~P~~~~~p~~-~~~~~G~~~~l~C~~~g~p~p-~v~W~~~g~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   79 (100)
T 2kdg_A            4 GPPRFIQVPEN-MSIDEGRFCRMDFKVSGLPAP-DVSWYLNGRT--VQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC   79 (100)
T ss_dssp             EEEECCCCCCC-EEEETTCCEEEEEECEEESCC-EEEEEETTEE--ECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEeCCCC-EEecCCCEEEEEEEEEeeCCC-EEEEEECCEE--CcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEE
Confidence            45666554444 678899999999999998888 8999998742  22221 12 2234444689999999999999999


Q ss_pred             EEEcCCceEEeeEEEEEE
Q psy11549        135 AAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~v~  152 (261)
                      .|.|..|.......+.|.
T Consensus        80 ~a~n~~g~~~~~~~l~V~   97 (100)
T 2kdg_A           80 VAKNRAGEATFTVQLDVL   97 (100)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEEE
Confidence            999999987765444443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.55  E-value=3.3e-14  Score=104.37  Aligned_cols=161  Identities=14%  Similarity=0.118  Sum_probs=95.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccc---cc-----c--CCceEE----------eCCceeEEEEecCCCCc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGET---LD-----V--GSERFS----------SGSRGSMLRYTPVTELD  128 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~---~~-----~--~~~~~~----------~~~~~~~l~i~~~~~~d  128 (261)
                      +.+..|+.+.|.|.+.+.+.+..+.|++++....   +.     .  ...++.          .... ..|.|.++..+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~L~i~~v~~~D   88 (231)
T 2pet_A           10 VEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ-GRLVLAEAQVGD   88 (231)
T ss_dssp             EEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT-CCEEESSCCGGG
T ss_pred             EEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC-ceEEEcccCccc
Confidence            6788999999999999888523899998754211   00     0  011222          2222 249999999999


Q ss_pred             CeEEEEEEEcCC-ceEEeeEEEEEEeCCCCCCCCcce----EEeecCCeE-EEEeecCCCCCCCeEEEEEEEeCCccc--
Q psy11549        129 YGTLSCAAQNAI-GTQVTPCLYQVVLAGKPQPPQNCS----VRNETTSSV-HISCTPGYDGGLPQTFTLELYSASDLN--  200 (261)
Q Consensus       129 ~g~y~C~~~~~~-~~~~~~~~~~v~~~~~p~~p~~~~----v~~~~~~~~-~l~c~~~~~~~~p~~~~~~~~~~~~~~--  200 (261)
                      +|.|+|.+.+.. +....  .+.+.+..+|..|....    +....|..+ .|.|.+  ..+.|.....|++......  
T Consensus        89 ~G~Y~C~~~~~~~~~~~~--~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~--~~~~p~p~i~W~~~~~~~~~~  164 (231)
T 2pet_A           89 ERDYVCVVRAGAAGTAEA--TARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNS--RNGNPAPKITWYRNGQRLEVP  164 (231)
T ss_dssp             CEEEEEEEECGGGCEEEE--EEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEE--EEEBSCCEEEEEETTEECCCC
T ss_pred             CceEEEEEEecCCCceEE--EEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEe--ECcccCCEEEEEECCccCccc
Confidence            999999999976 54444  45555556665443111    111246766 999996  3344544344554422110  


Q ss_pred             ----eeE----EEecCCC------CcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        201 ----LLV----NLTNLDT------PAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       201 ----~~~----~~~~~~~------~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                          ...    .......      ..+.|......+.|.|  +|.|.|.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y--~C~a~n~~  212 (231)
T 2pet_A          165 VEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASF--HCAAHYSL  212 (231)
T ss_dssp             SSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEE--EEEEEEEC
T ss_pred             cccccceeecceeEecCCCeEEEEEEEEEecchhhCCceE--EEEEEcCC
Confidence                011    0011111      3466655445569999  99999964

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.55  E-value=3.1e-14  Score=118.63  Aligned_cols=125  Identities=23%  Similarity=0.336  Sum_probs=86.4

Q ss_pred             CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece---eecCceeEEEeeCCCc-EEEEEEEeeC-
Q psy11549         12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI---CKSDRIVIVGASRSES-VDIHCAVEAD-   86 (261)
Q Consensus        12 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~---~~~~~~~~~~~~~g~~-~~l~C~~~~~-   86 (261)
                      .+.....+++|.|.+++.+|+|.|+|.+.|..+......+.|.|..+|.   +.....  . +..+.. +.|.|.+.+. 
T Consensus       424 ~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~--~-~~~~~~~~~l~C~~~~~~  500 (581)
T 3o3u_N          424 SVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSAS--E-LTAGVPNKVGTCVSEGSY  500 (581)
T ss_dssp             GTSEECTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCS--E-ECTTSCEEEEEEEEEEEB
T ss_pred             CcEEEcCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCc--c-cccCCceeEEEEECCCCC
Confidence            3456667789999999999999999999999887656678899876443   322222  2 334444 4679999985 


Q ss_pred             CCCceeEEEEcCCccccccCCceEEe--------CC----ceeEEEEecCC-CCcCeEEEEEEEcCCce
Q psy11549         87 PPARSFKWKFNNSGETLDVGSERFSS--------GS----RGSMLRYTPVT-ELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        87 ~~~~~~~W~~~~~~~~~~~~~~~~~~--------~~----~~~~l~i~~~~-~~d~g~y~C~~~~~~~~  142 (261)
                      |.+ ++.|++++....  .....+..        ..    ..+.|.|..+. .++.+.|+|.+.|....
T Consensus       501 P~~-~i~W~~~g~~l~--~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          501 PAG-TLSWHLDGKPLV--PNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             SCC-EEEEEETTEECC--TTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             CCC-eEEEEECCEECC--CCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            666 899999874322  22222111        11    13468999888 55588999999998643

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.55  E-value=5.8e-13  Score=97.13  Aligned_cols=165  Identities=15%  Similarity=0.088  Sum_probs=97.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc----------------cCCceEEeC----CceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD----------------VGSERFSSG----SRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~----------------~~~~~~~~~----~~~~~l~i~~~~~~  127 (261)
                      +.+..|++++|.|.+.+.+. ...+.|++...+....                ....++...    .....|.|.++..+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (220)
T 2fbj_H           10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (220)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             eEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChh
Confidence            56789999999999987652 2379999864321110                011233322    33568999999999


Q ss_pred             cCeEEEEEEEcCCce---EEeeEEEEEEeCCCC-CCCCcceEE----eecCCeEEEEeecCCCCCCCe--EEEEEEEeCC
Q psy11549        128 DYGTLSCAAQNAIGT---QVTPCLYQVVLAGKP-QPPQNCSVR----NETTSSVHISCTPGYDGGLPQ--TFTLELYSAS  197 (261)
Q Consensus       128 d~g~y~C~~~~~~~~---~~~~~~~~v~~~~~p-~~p~~~~v~----~~~~~~~~l~c~~~~~~~~p~--~~~~~~~~~~  197 (261)
                      |+|.|.|.+.+..+.   ....  ..+.|...+ .+|.. .+.    ...|..++|.|.+  .+..|.  ..+.|++...
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~--~~L~V~~~~~~~P~v-~~~~~~~~~~g~~v~L~C~~--~g~~P~~~~~v~W~~~~~  164 (220)
T 2fbj_H           90 DTALYYCARLHYYGYNAYWGQG--TLVTVSAESARNPTI-YPLTLPPALSSDPVIIGCLI--HDYFPSGTMNVTWGKSGK  164 (220)
T ss_dssp             GCEEEEEEEEETTTEEEEECCC--EEEEECSSCCBCCEE-EEECCCSSSCCSSEEEEEEE--EEEBSCCCEEEEESCCCS
T ss_pred             hCEEEEEEEeccccccceecCC--EEEEecCCCCCCCEE-EEeecccccCCCcEEEEEEE--EeEECCCcEEEEEecCCE
Confidence            999999999987543   1122  234443322 23322 111    1358899999997  344353  3334444433


Q ss_pred             ccce-eE-EEecCCC-----CcEEEcCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549        198 DLNL-LV-NLTNLDT-----PAFTLEDLGLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       198 ~~~~-~~-~~~~~~~-----~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      .... .. .......     ..+.|......++|.|  +|.|.|..|...
T Consensus       165 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~y--tC~v~n~~~~~~  212 (220)
T 2fbj_H          165 DITTVNFPPALASGGRYTMSNQLTLPAVECPEGESV--KCSVQHDSNPVQ  212 (220)
T ss_dssp             SCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEE--EEEEEETTSCCE
T ss_pred             ecceEecCceECCCCCEEEEEEEEECHHHcCCCCeE--EEEEEcCCCceE
Confidence            2110 01 1111111     2467777667788999  999999998643

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.54  E-value=1.9e-13  Score=99.97  Aligned_cols=122  Identities=16%  Similarity=0.255  Sum_probs=79.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC----c-ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG----E-ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PPA   89 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~----~-~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~   89 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+    . .....+.|.|..    +|.+...... ..+..|+.++|.|.+.+. |.+
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p  157 (223)
T 1dee_B           79 LYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSC-ENSNPSSTVAVGCLAQDFLPDS  157 (223)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECT-TCCCSSSEEEEEEEEEEEBSSC
T ss_pred             EEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCC-cccCCCCcEEEEEEEEEEeCCC
Confidence            3899999999999999999988753    1 112345788863    3333211100 123589999999999987 555


Q ss_pred             ceeEEEE-cCCccccc--c----CCceEEeCCceeEEEEecCCC--CcCeEEEEEEEcCCceEEe
Q psy11549         90 RSFKWKF-NNSGETLD--V----GSERFSSGSRGSMLRYTPVTE--LDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        90 ~~~~W~~-~~~~~~~~--~----~~~~~~~~~~~~~l~i~~~~~--~d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+.|++ ++......  .    ....+.   ..+.|.|.....  +|.|.|+|.|.|..+....
T Consensus       158 ~~v~W~~~~g~~l~~~~~~~~~~~~~~~~---~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~  219 (223)
T 1dee_B          158 ITFSWKYKNNSDISSTRGFPSVLRGGKYA---ATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEK  219 (223)
T ss_dssp             CEEEEEETTSCBCSCEEECCCEEETTEEE---EEEEEEEECTTTTSTTCCEEEEEEECTTCCEEE
T ss_pred             eEEEeEccCCCccceeEECCccccCCeEE---EEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcc
Confidence            5899999 66421110  0    001111   134578877766  7899999999998876544

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.54  E-value=4.5e-14  Score=105.29  Aligned_cols=120  Identities=13%  Similarity=0.184  Sum_probs=77.5

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC---cceeeeEEEEEE----eeceeecCceeEEEeeCCCcEEEEEEEee-CCCCcee
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG---EATSNQLKLRVK----YAPICKSDRIVIVGASRSESVDIHCAVEA-DPPARSF   92 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~---~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~~~   92 (261)
                      +|+|.+++.+|+|.|+|.+.+...   ......+.|.|.    .+|.+...... ..+..|+.++|.|.+.+ .|.+..+
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v  158 (253)
T 3liz_H           80 FLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTV  158 (253)
T ss_dssp             EEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC-------CCEEEEEEEEEEEBSSCCEE
T ss_pred             EEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCC-cccCCCCcEEEEEEEeeEeCCCeEE
Confidence            499999999999999999987631   111334577775    34444322211 23457999999999998 4545589


Q ss_pred             EEEEcCCcccccc-----CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         93 KWKFNNSGETLDV-----GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        93 ~W~~~~~~~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .|++++.......     ....+..   .+.|.|.....+| |.|+|.|.+..+....
T Consensus       159 ~W~~~~~~~~~~~~~~~~~~g~~~~---~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~  212 (253)
T 3liz_H          159 TWNSGSLSSGVHTFPAVLQSDLYTL---SSSVTVPSSTWPS-ETVTCNVAHPASSTKV  212 (253)
T ss_dssp             EEGGGTBCTTEEECCCEEETTEEEE---EEEEEEETTSTTT-SCCEEEEEEGGGTEEE
T ss_pred             EEEeCCeecceEeCCccccCCeEEE---EEEEEEcHHHCCC-ceEEEEEEECCCCcce
Confidence            9998764211100     0012211   2468999999899 9999999998775554

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.54  E-value=3.1e-14  Score=104.49  Aligned_cols=123  Identities=17%  Similarity=0.234  Sum_probs=79.6

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC------c--ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG------E--ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-   86 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~------~--~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-   86 (261)
                      .+|.|.+++.+|+|.|+|.+.+..|      .  .....+.|.|..    +|.+...... ..+..|+.++|.|.+.+. 
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~g~~  158 (228)
T 3bae_H           80 VFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYF  158 (228)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC------CCSEEEEEEEEEEEB
T ss_pred             EEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEeccc-ccccCCCCEEEEEEEccEe
Confidence            5899999999999999999988764      1  112336788863    3443321111 234689999999999987 


Q ss_pred             CCCceeEEEEcCCccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         87 PPARSFKWKFNNSGETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        87 ~~~~~~~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      |.+..+.|++++...... ........+   ..+.|.|.....++ |.|+|.|.|..+....
T Consensus       159 P~p~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~  218 (228)
T 3bae_H          159 PEPVTLTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKV  218 (228)
T ss_dssp             SSCCEEEEGGGTCCTTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEE
T ss_pred             CCCEEEEEeeCCcccCce-EcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCE
Confidence            555589999876421111 001111111   13468888888866 9999999998776544

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.54  E-value=1.8e-13  Score=100.68  Aligned_cols=125  Identities=21%  Similarity=0.264  Sum_probs=75.5

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC--Cc---ceeeeEEEEEEe----eceeecCceeEEEeeCC-CcEEEEEEEeeC-CCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK--GE---ATSNQLKLRVKY----APICKSDRIVIVGASRS-ESVDIHCAVEAD-PPA   89 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~--~~---~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~-~~~   89 (261)
                      +|.|.+++.+|+|.|+|.+.+..  +.   .....+.|.|..    +|.+...... ..+..| +.++|.|.+.+. |.+
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p  157 (232)
T 1dn0_B           79 SLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDS  157 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSC
T ss_pred             EEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCC
Confidence            89999999999999999998422  11   112345788864    2333211111 123467 999999999987 555


Q ss_pred             ceeEEEE-cCCccccccCCceEEeCC---ceeEEEEecCCC--CcCeEEEEEEEcCCceEEee
Q psy11549         90 RSFKWKF-NNSGETLDVGSERFSSGS---RGSMLRYTPVTE--LDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        90 ~~~~W~~-~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~--~d~g~y~C~~~~~~~~~~~~  146 (261)
                      ..+.|++ ++...............+   ..+.|.|.....  +|.|.|+|.+.|..+.....
T Consensus       158 ~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~  220 (232)
T 1dn0_B          158 ITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKN  220 (232)
T ss_dssp             CEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEE
T ss_pred             eEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCccee
Confidence            5899999 664211100000000011   134688888776  78999999999988766553

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.54  E-value=5.4e-14  Score=104.82  Aligned_cols=165  Identities=15%  Similarity=0.171  Sum_probs=97.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCC----CceeEEEEcCCccccc-----------cCCceEEe--CCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPP----ARSFKWKFNNSGETLD-----------VGSERFSS--GSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~----~~~~~W~~~~~~~~~~-----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+..|++++|.|.+.+.++    ...+.|++++.+....           ....++..  ......|.|.++..+|+|.
T Consensus        44 ~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~  123 (252)
T 3bkj_L           44 LPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGV  123 (252)
T ss_dssp             EEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCEE
Confidence            66889999999999988771    2389999865321110           00123322  3345589999999999999


Q ss_pred             EEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcccee-E-
Q psy11549        132 LSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLL-V-  203 (261)
Q Consensus       132 y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~-~-  203 (261)
                      |+|.+.+..+..... ...+.+...+.+|. +.+..     ..|..++|.|.+  .+..|.. .+.|+++....... . 
T Consensus       124 Y~C~~~~~~~~~~~~-~~~l~V~~~~~~P~-v~~~~~~~~~~~g~~v~L~C~~--~g~~p~~~~v~W~k~g~~~~~~~~~  199 (252)
T 3bkj_L          124 YYCFQASLVPLTFGA-GTKLELKRADAAPT-VSIFPPSSEQLTSGGASVVCFL--NNFYPKDINVKWKIDGSERQNGVLN  199 (252)
T ss_dssp             EEEEECSBSSCEECC-CEEEEECCCCBCCE-EEEECCCHHHHHHTEEEEEEEE--EEEBSSCCEEEEEETTEEECSSEEE
T ss_pred             EEEEEEcCCccEECC-CEEEEEeCCCcCcE-EEEeCCChhhcCCCcEEEEEEE--eeEeCCCcEEEEEECCeecCCCeee
Confidence            999999875432211 12344433333332 22211     247899999997  3434432 23444443221111 1 


Q ss_pred             --EEecCCC------CcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        204 --NLTNLDT------PAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       204 --~~~~~~~------~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                        .......      ..+.|..+..+|+|.|  +|.|.|.....
T Consensus       200 ~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y--~C~a~n~~~~~  241 (252)
T 3bkj_L          200 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSY--TCEATHKTSTS  241 (252)
T ss_dssp             EECCCCTTTCCEEEEEEEEEEHHHHHHCCEE--EEEEECTTCSS
T ss_pred             ecCcccCCCCCEEEEEEEEEcchhccCCCeE--EEEEEeCCCCC
Confidence              1111111      2377888667789999  99999987654

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.54  E-value=3.4e-14  Score=91.57  Aligned_cols=102  Identities=20%  Similarity=0.315  Sum_probs=60.8

Q ss_pred             EEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCe
Q psy11549         51 LKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        51 ~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g  130 (261)
                      +.|.+..+|.+...... ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +.. ...+........|.|.++..+|+|
T Consensus         3 ~~v~~~~~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p-~i~W~~~~~~--~~~-~~~~~~~~~~~~L~i~~v~~~D~G   77 (108)
T 3kvq_A            3 LTVLERVAPTITGNLEN-QTTSIGESIEVSCTASGNPPP-QIMWFKDNET--LVE-DSGIVLKDGNRNLTIRRVRKEDEG   77 (108)
T ss_dssp             --------CCCBSCCCC-EEEETTCCEEEECBCC----C-CEEEEESSSB--CCC-BTTEEEETTTTEEEECSCCGGGCE
T ss_pred             eeECccCCCceecCCCC-eEEeCCCeEEEEEECcCcCCC-eEEEEECCeE--ccc-CCCeEEeCCCcEEEEeecCcccCE
Confidence            45677778887766554 778899999999999998888 7999998743  222 222333333457999999999999


Q ss_pred             EEEEEEEcCCceEEeeEEEEEEeCCCCCC
Q psy11549        131 TLSCAAQNAIGTQVTPCLYQVVLAGKPQP  159 (261)
Q Consensus       131 ~y~C~~~~~~~~~~~~~~~~v~~~~~p~~  159 (261)
                      .|+|.+.|..|.....  +.+.+..+|..
T Consensus        78 ~Y~C~a~n~~g~~~~~--~~l~V~~~~~~  104 (108)
T 3kvq_A           78 LYTCQACSVLGCAKVE--AFFIIEGAQEK  104 (108)
T ss_dssp             EEEEEEC----CEEEE--EEEEEEC----
T ss_pred             EEEEEEEeCCCceEEE--EEEEEeCCCcc
Confidence            9999999998887775  44444455543

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.54  E-value=9.7e-13  Score=98.69  Aligned_cols=161  Identities=15%  Similarity=0.136  Sum_probs=96.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-----CceeEEEEcCCccccc--c---------CCceEEe--CCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADPP-----ARSFKWKFNNSGETLD--V---------GSERFSS--GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-----~~~~~W~~~~~~~~~~--~---------~~~~~~~--~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+.+|++++|.|.+.+.+.     ...+.|++...+....  .         ...++..  ......|.|.++..+|+|
T Consensus        15 v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG   94 (264)
T 2gjj_A           15 LPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSVKAEDLA   94 (264)
T ss_dssp             EEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCCCHHHCE
Confidence            66789999999999988761     3379999854221110  0         1223332  234558999999999999


Q ss_pred             EEEEEEEcCCceE-EeeEEEEEEeCCCCC---------------CCC-c----ceEEeecCCeEEEEeecCCCCCCC-eE
Q psy11549        131 TLSCAAQNAIGTQ-VTPCLYQVVLAGKPQ---------------PPQ-N----CSVRNETTSSVHISCTPGYDGGLP-QT  188 (261)
Q Consensus       131 ~y~C~~~~~~~~~-~~~~~~~v~~~~~p~---------------~p~-~----~~v~~~~~~~~~l~c~~~~~~~~p-~~  188 (261)
                      .|.|.+.+..+.. .....+.|.  .+|.               .|. .    .......|+.++|.|..  .+..+ ..
T Consensus        95 ~Y~C~~~~~~~~~~~~~~~L~V~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~--~~~~~~~~  170 (264)
T 2gjj_A           95 VYYCQQYSNYPWTFGGGTRLEIK--RGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKA--SGYSFTGY  170 (264)
T ss_dssp             EEEEEECSSSSCEECCCEEEEEE--CC-------------------CCEEEECCCEEECTTCCEEEEEEE--ESSCGGGS
T ss_pred             EEEEEEecCCccEecCCEEEEEE--cCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEE--eCCccCCe
Confidence            9999999875421 122234443  3321               010 0    01234579999999997  33322 13


Q ss_pred             EEEEEEeC-Ccccee--------------------EEEe---cCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        189 FTLELYSA-SDLNLL--------------------VNLT---NLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       189 ~~~~~~~~-~~~~~~--------------------~~~~---~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      .+.|++.. +..+..                    +...   ......|.|.+++.+|.|.|  .|.|.|.
T Consensus       171 ~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~a~n~  239 (264)
T 2gjj_A          171 FINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADY--YCVRSGN  239 (264)
T ss_dssp             EEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEE--EEEEECS
T ss_pred             EEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEE--EEEEecC
Confidence            44555542 211110                    1011   11234799999999999999  8889885

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.53  E-value=2.9e-14  Score=104.44  Aligned_cols=120  Identities=13%  Similarity=0.148  Sum_probs=78.6

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC-----c--ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-C
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG-----E--ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-P   87 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~-----~--~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~   87 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+     .  .....+.|.|..    +|.+...... ..+..|+.++|.|.+.+. |
T Consensus        79 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~g~~P  157 (225)
T 1op3_H           79 VYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFP  157 (225)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCC-TTCCCCCEEEEEEEEEEEBS
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEeccc-ccccCCCcEEEEEEEEeEEC
Confidence            4899999999999999999998764     2  112346788874    2333211111 124579999999999987 5


Q ss_pred             CCceeEEEEcCCccccccCCceEEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         88 PARSFKWKFNNSGETLDVGSERFSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        88 ~~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      .+..+.|++++....... .......+    ..+.|.|.....+| |.|+|.|.|..+.
T Consensus       158 ~p~~v~W~~~~~~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~  214 (225)
T 1op3_H          158 EPVTVSWNSGALTSGVHT-FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  214 (225)
T ss_dssp             SCCEEECCTTSCCTTCEE-CCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred             CCeEEEEecCCCcCCeEe-cCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence            455899998764211100 00111111    12368898888888 9999999996554

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.53  E-value=3e-13  Score=85.62  Aligned_cols=90  Identities=20%  Similarity=0.290  Sum_probs=66.1

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +|.+...+.. ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +.....++.  ..+....|.|.++..+|+|.|+|.
T Consensus         5 ~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p-~v~W~k~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (99)
T 1u2h_A            5 PPTFKVSLMD-QSVREGQDVIMSIRVQGEPKP-VVSWLRNRQP--VRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCK   80 (99)
T ss_dssp             EEEEEECCCC-EEEETTCCEEEEEEEEEESCC-EEEEEETTEE--CCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCc-eEecCCCEEEEEEEEEEcCCC-EEEEEECCEE--CCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEE
Confidence            4555444433 578899999999999999888 8999998742  222223332  234445799999999999999999


Q ss_pred             EEcCCceEEeeEEEEE
Q psy11549        136 AQNAIGTQVTPCLYQV  151 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v  151 (261)
                      |.|..|.......+.|
T Consensus        81 a~N~~g~~~~~~~l~V   96 (99)
T 1u2h_A           81 AVNEYGARQCEARLEV   96 (99)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCCceeEEEEEEE
Confidence            9999988777544443

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.53  E-value=2e-13  Score=85.42  Aligned_cols=89  Identities=12%  Similarity=0.187  Sum_probs=66.0

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +|.+..+... +.+..|+.+.|.|.+.+.|.| .+.|++++.+..+.. ...+........|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~i~~~~~~-~~v~~G~~~~l~C~~~g~P~p-~i~W~k~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   78 (93)
T 1wit_A            2 KPKILTASRK-IKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGAALAP-ELLVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCE-EEECTTBCCEEEEEEECCSSC-EEEEECSTTTCBCST-TSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEcCCCc-eEEeCCCEEEEEEEEEEcCCC-EEEEEECCCCcccCC-cEEEEecCCEEEEEECCCChhcCEEEEEEEE
Confidence            4555444443 778999999999999999998 899999872222221 2233334445689999999999999999999


Q ss_pred             cCCceEEeeEEE
Q psy11549        138 NAIGTQVTPCLY  149 (261)
Q Consensus       138 ~~~~~~~~~~~~  149 (261)
                      |..|.......+
T Consensus        79 N~~G~~~~~~~l   90 (93)
T 1wit_A           79 NELGEDEAIFEV   90 (93)
T ss_dssp             ETTEEEEEEEEE
T ss_pred             cCCCeEEEEEEE
Confidence            999977664443

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=3.5e-13  Score=85.33  Aligned_cols=90  Identities=16%  Similarity=0.158  Sum_probs=66.3

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +|.+...... ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +........  .......|.|.++..+|+|.|+|.
T Consensus         5 ~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~--~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   80 (99)
T 1g1c_A            5 APKIFERIQS-QTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVK--IERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK   80 (99)
T ss_dssp             EEEEEECCCC-EEEETTSCEEEEEEEEEESCC-EEEEEETTEE--CCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCceEecCcc-eEEcCCCcEEEEEEEEEeCCC-EEEEEECCEE--CCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEE
Confidence            4555444443 678899999999999998888 8999998742  222222221  234556899999999999999999


Q ss_pred             EEcCCceEEeeEEEEE
Q psy11549        136 AQNAIGTQVTPCLYQV  151 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v  151 (261)
                      |.|..|.......+.|
T Consensus        81 a~N~~g~~~~~~~l~V   96 (99)
T 1g1c_A           81 AINIAGETSSHAFLLV   96 (99)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             EEECCCcEEEEEEEEE
Confidence            9999998877545444

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.53  E-value=1.2e-13  Score=88.22  Aligned_cols=94  Identities=17%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             EeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         56 KYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        56 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      ..+|.+...... ..+..|+.+.|.|.+.+.|.| .+.|++++.... ......+........|.|.++..+|+|.|+|.
T Consensus         6 ~~~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p-~i~W~k~~~~~~-~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   82 (103)
T 3qp3_A            6 DHAPRITLRMRS-HRVPCGQNTRFILNVQSKPTA-EVKWYHNGVELQ-ESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV   82 (103)
T ss_dssp             CEEEEEEECCCC-EEEETTCCEEEEEEEEEESCC-EEEEEETTEECC-CCSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCCCEEEeCCcc-eEEeCCCeEEEEEEEEecCCC-EEEEEECCEECC-CCCCEEEEECCCEEEEEEcCCCcccCEEEEEE
Confidence            345665554444 678899999999999999988 899999874221 11222233344556899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEE
Q psy11549        136 AQNAIGTQVTPCLYQVV  152 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~  152 (261)
                      |.|..|.......+.|.
T Consensus        83 a~N~~G~~~~~~~l~V~   99 (103)
T 3qp3_A           83 CTNYKGEASDYATLDVT   99 (103)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEEE
Confidence            99999988775455443

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.5e-14  Score=91.89  Aligned_cols=99  Identities=19%  Similarity=0.305  Sum_probs=70.5

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceE-EeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF-SSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      +|.+...+.. +.+..|+.+.|.|.+.+.|.+ .+.|++++..... .....+ ........|.|.++..+|+|.|+|.|
T Consensus         9 ~P~i~~~~~~-~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm3_A            9 RPHFLQAPGD-LTVQEGKLCRMDCKVSGLPTP-DLSWQLDGKPVRP-DSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA   85 (110)
T ss_dssp             CCEEEECCCE-EEEESSSCBCCEEEEECSSCC-EEECBBSSSBCCC-CSSEEEEECTTSCEEEEESSCCGGGCSBBCEEE
T ss_pred             CCcEEeCCCc-EEEeCCCEEEEEEEEEEcCCC-EEEEEECCEECCC-CCceEEEEecCCeEEEEEeeCCcccCEEEEEEE
Confidence            4444444443 678899999999999998888 8999997743221 111122 22333458999999999999999999


Q ss_pred             EcCCceEEeeEEEEEEeCCCCCCCC
Q psy11549        137 QNAIGTQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus       137 ~~~~~~~~~~~~~~v~~~~~p~~p~  161 (261)
                      .|..|....  .+.+.|..+|.+|.
T Consensus        86 ~n~~g~~~~--~~~l~V~~~p~~P~  108 (110)
T 2dm3_A           86 TNRAGQNSF--SLELVVAAKESGPS  108 (110)
T ss_dssp             ECSSCEEEE--CCEEEEECCCCSSS
T ss_pred             ECCCCEEEE--EEEEEEeCCCCCCC
Confidence            999988666  44555556776664

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.53  E-value=1.4e-12  Score=99.22  Aligned_cols=161  Identities=12%  Similarity=0.108  Sum_probs=95.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc----------------cCCceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD----------------VGSERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~----------------~~~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +.+.+|++++|.|.+.+.+. ...+.|++...+....                ....++..    ......|.|.++..+
T Consensus        32 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~  111 (291)
T 2gki_A           32 ELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSE  111 (291)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCGG
T ss_pred             EEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCHH
Confidence            56789999999999987662 2279999864321110                00122222    123568999999999


Q ss_pred             cCeEEEEEEEcCC-c--eEEeeEEEEEEeCC----------------CCC---CCCcceEEeecCCeEEEEeecCCCCCC
Q psy11549        128 DYGTLSCAAQNAI-G--TQVTPCLYQVVLAG----------------KPQ---PPQNCSVRNETTSSVHISCTPGYDGGL  185 (261)
Q Consensus       128 d~g~y~C~~~~~~-~--~~~~~~~~~v~~~~----------------~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~  185 (261)
                      |+|.|.|.+.+.. +  .........+.|..                ++.   .|.  .+....|+.++|.|.+  .+..
T Consensus       112 DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~--~~~v~~G~~v~L~C~~--~~~~  187 (291)
T 2gki_A          112 DSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPS--SLAVSAGEKVTMSCKS--SQSL  187 (291)
T ss_dssp             GCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCS--EEEEETTSCEEEEEEE--SSCC
T ss_pred             HCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCC--EEEEcCCCcEEEEEEc--CCcc
Confidence            9999999999864 1  11110112333333                111   122  2334579999999997  3322


Q ss_pred             Ce-----EEEEEEEeC-Cccce---------------eEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        186 PQ-----TFTLELYSA-SDLNL---------------LVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       186 p~-----~~~~~~~~~-~~~~~---------------~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      +.     ....|++.. +....               .+.. .......|+|.+++.+|+|.|  .|.|.|.
T Consensus       188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~a~~~  257 (291)
T 2gki_A          188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVY--YCKQSYY  257 (291)
T ss_dssp             EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE--EEEEEET
T ss_pred             ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEE--EEEEccC
Confidence            22     255566653 22111               1110 111224699999999999999  8888774

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=2.8e-13  Score=88.70  Aligned_cols=98  Identities=10%  Similarity=0.120  Sum_probs=72.0

Q ss_pred             EEeeceeecC--ceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEE
Q psy11549         55 VKYAPICKSD--RIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        55 V~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +..+|.+..+  ....+.+..|+.+.|.|.+.+.|.| .+.|++++..  +......+........|.|.++..+|+|.|
T Consensus        18 v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p-~i~W~k~g~~--l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y   94 (118)
T 2e7c_A           18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRP-QVVWTKGGAP--LDTSRVHVRTSDFDTVFFVRQAARSDSGEY   94 (118)
T ss_dssp             CSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCC-EEEEEETTEE--CCCSSCEEEECSSEEEEEESSCCTTTCEEE
T ss_pred             eccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCC-EEEEEECCEE--CCCCcEEEEECCCeEEEEECCCChhcCEEE
Confidence            3457776432  2223678899999999999999988 8999998743  222333444555566799999999999999


Q ss_pred             EEEEEcCCceEEeeEEEEEEeCCCC
Q psy11549        133 SCAAQNAIGTQVTPCLYQVVLAGKP  157 (261)
Q Consensus       133 ~C~~~~~~~~~~~~~~~~v~~~~~p  157 (261)
                      +|.|.|..|....  .+.+.+..+|
T Consensus        95 ~C~a~N~~G~~~~--~~~l~V~~~P  117 (118)
T 2e7c_A           95 ELSVQIENMKDTA--TIRIRVVEKA  117 (118)
T ss_dssp             EEEEECSSCEECC--EEEEEEECCC
T ss_pred             EEEEEeCCCeEEE--EEEEEEEcCC
Confidence            9999999997666  4555554554

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.52  E-value=1.7e-13  Score=99.96  Aligned_cols=119  Identities=15%  Similarity=0.219  Sum_probs=78.7

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC-cceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEee-CCC-CceeE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG-EATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEA-DPP-ARSFK   93 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~-~~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~-~~~~~   93 (261)
                      +|.|.+++.+|+|.|+|.+.+... ......+.|.|..    +|.+...... .. ..|+.++|.|.+.+ .|. +..+.
T Consensus        82 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~-~~-~~g~~v~L~C~~~~~~P~~~~~v~  159 (221)
T 3m8o_H           82 FLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLC-ST-QPDGNVVIACLVQGFFPQEPLSVT  159 (221)
T ss_dssp             EEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECC-SC-CCTTEEEEEEEEEEEBSSCSEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCc-cc-ccCCCEEEEEEEEeeECCCCEEEE
Confidence            699999999999999999988642 2223445677752    2332211111 11 58999999999998 554 45899


Q ss_pred             EEEcCCccccc-------cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         94 WKFNNSGETLD-------VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        94 W~~~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      |++++......       .....+..   .+.|.|.....+|.|.|+|.|.+..+...
T Consensus       160 W~~~g~~~~~~~~~~~~~~~~~~~~~---~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          160 WSESGQGVTARNFPPSQDASGDLYTT---SSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             ESCCSTTCEEEECCCEECSSSSCEEE---EEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEECCEECceEEcCceeeCCCCcEEE---EEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            99876432110       01111211   23588999989999999999999865433

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.52  E-value=9.5e-15  Score=105.64  Aligned_cols=119  Identities=13%  Similarity=0.086  Sum_probs=75.0

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEE--EEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKL--RVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWK   95 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l--~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~   95 (261)
                      ++|.|.+++.+|+|.|+|.|.|..+.. ....+.+  .+..+|.+...... .....|+.+.|.|.+.+.++ +..+.|+
T Consensus        68 ~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~-~~~~~g~~~~L~C~~~g~~P~~~~v~W~  146 (207)
T 2vol_A           68 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPP-KEQMAKDKVSLTCMITDFFPEDITVEWE  146 (207)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCC-TGGGSSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCC-HHHhcCCceEEEEEEeeEECCCCEEEEE
Confidence            479999999999999999999987753 1223333  34456654322211 11225899999999998644 3589999


Q ss_pred             EcCCccccccC-CceEEeC-Cc----eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         96 FNNSGETLDVG-SERFSSG-SR----GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        96 ~~~~~~~~~~~-~~~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +++..  +... ....... ++    .+.|.+.....+|.|.|+|.|.|...
T Consensus       147 k~g~~--l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l  196 (207)
T 2vol_A          147 SNGQP--AENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  196 (207)
T ss_dssp             ETTEE--CSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred             ECCEe--ccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence            98742  2111 1111111 11    12355555555678999999999754

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.51  E-value=1.9e-14  Score=103.72  Aligned_cols=150  Identities=13%  Similarity=0.154  Sum_probs=88.8

Q ss_pred             eeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEE
Q psy11549         71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQ  150 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~  150 (261)
                      +..|+.++|.|.+   |.+ .+.|++++..  +...      ......|.|.++..+|+|.|+|.+.+....   ...+.
T Consensus        15 ~~~G~~v~L~C~~---p~~-~i~W~k~g~~--l~~~------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~---~~~v~   79 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAK-NITWFKDGKM--IGFL------TEDKKKWNLGSNAKDPRGMYQCKGSQNKSK---PLQVY   79 (204)
T ss_dssp             CCSSSEEEEEECS---CSS-EEEEEETTEE--EEEE------ESSCCCEEEEEGGGCCEEEEEEESSSSCCC---CEEEE
T ss_pred             ecCCCeEEEEEcC---CCC-EEEEEECCEE--CCCC------CCCCCeEEeCCCCcCCCEEEEEEecCCCCe---eEEEE
Confidence            3589999999998   455 8999997742  2110      112346999999999999999997553221   11222


Q ss_pred             EEe------C-------------------C----CCC---CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCc
Q psy11549        151 VVL------A-------------------G----KPQ---PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASD  198 (261)
Q Consensus       151 v~~------~-------------------~----~p~---~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~  198 (261)
                      +..      .                   .    ++.   .|.  .+. ..|+.++|.|.. .   ....+ .|+++...
T Consensus        80 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~v~-~~G~~v~L~C~g-~---p~p~i-~W~k~~~~  151 (204)
T 1sy6_A           80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY--KVS-ISGTTVILTCPQ-Y---PGSEI-LWQHNDKN  151 (204)
T ss_dssp             EEC------------------------------------CCCC--EEE-EETTEEEEECSC-C---CSSCE-EEEETTEE
T ss_pred             EEEeccccccccccccccccccccccccccccccccceecCCc--eee-ecCCcEEEEcCC-C---CCCce-EEEECCEE
Confidence            220      0                   0    110   111  221 259999999982 1   11223 34444322


Q ss_pred             ccee---EEEecCCCCcEEEcCC-CCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        199 LNLL---VNLTNLDTPAFTLEDL-GLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       199 ~~~~---~~~~~~~~~~~~i~~~-~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      ....   .... .....|.|.++ +..|+|.|  +|.|.|..|.. .+..+.+
T Consensus       152 l~~~~~~~~~~-~~~~~L~I~~v~~~~D~G~Y--~C~A~N~~g~~-~s~~l~l  200 (204)
T 1sy6_A          152 IGGDEDDKNIG-SDEDHLSLKEFSELEQSGYY--VCYPRGSKPED-ANFYLYL  200 (204)
T ss_dssp             ESCCTTCTTEE-EETTEEEETTCCHHHHCEEE--EEEETTSCGGG-SSCEEEE
T ss_pred             CCCccCCceEe-cCCCEEEEeeCCccccCEEE--EEEeccCCCCc-eeEEEEE
Confidence            1100   0011 12578999998 88999999  99999999953 3444433

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=1.6e-13  Score=88.69  Aligned_cols=98  Identities=17%  Similarity=0.230  Sum_probs=70.1

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE--eC-CceeEEEEecCCCCcCeEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--SG-SRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~-~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +|.+...... ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +.....++.  .. .....|.|.++..+|+|.|+|
T Consensus         8 ~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~--~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm2_A            8 APFFEMKLKH-YKIFEGMPVTFTCRVAGNPKP-KIYWFKDGKQ--ISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI   83 (110)
T ss_dssp             CCCBSSCCCC-EEEETTCCEEEEEEBCCSSCC-EEEEECSSCB--CCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEE
T ss_pred             CCEEEecCcC-eEEeCCCeEEEEEEEEecCCC-EEEEEECCEE--CCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEE
Confidence            4555444443 678899999999999998888 8999998743  222222332  22 334579999999999999999


Q ss_pred             EEEcCCceEEeeEEEEEEeCCCCCCCC
Q psy11549        135 AAQNAIGTQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~v~~~~~p~~p~  161 (261)
                      .+.|..|.....  +.+.|..+|.+|.
T Consensus        84 ~a~N~~g~~~~~--~~l~V~~~~~~P~  108 (110)
T 2dm2_A           84 MAANPQGRISCT--GRLMVQAVNSGPS  108 (110)
T ss_dssp             EEECTTCCEEEC--CCEEEECCSCCSS
T ss_pred             EEEECCCeEEEE--EEEEEECCCCCCC
Confidence            999999987664  3445556666553

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.51  E-value=3.3e-13  Score=98.94  Aligned_cols=172  Identities=13%  Similarity=0.118  Sum_probs=96.3

Q ss_pred             EEeeCCCcEEEEEEEeeCC--CCceeEEEEcCCccccc-c---------------CCceEEe----CCceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVEADP--PARSFKWKFNNSGETLD-V---------------GSERFSS----GSRGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~~-~---------------~~~~~~~----~~~~~~l~i~~~~~  126 (261)
                      +.+..|++++|.|.+.+.+  .+ .+.|++...+.... +               ...++..    ......|.|.++..
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (227)
T 1mju_H           10 ELVKPGASVKLSCKASGYTFTNY-WINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS   88 (227)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEcCCCCEEEEEEecCCccccc-eEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCc
Confidence            5678999999999999876  34 79999865322110 0               0123332    13456899999999


Q ss_pred             CcCeEEEEEEEcCCceE-EeeEEEEEEeCC-CCCCCCcceE----EeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcc
Q psy11549        127 LDYGTLSCAAQNAIGTQ-VTPCLYQVVLAG-KPQPPQNCSV----RNETTSSVHISCTPGYDGGLPQT-FTLELYSASDL  199 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~~~-~~~~~~~v~~~~-~p~~p~~~~v----~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~  199 (261)
                      +|+|.|.|.+.+..... .....  +.|.. ++.+|.....    ....|+.++|.|.+  .+..|.. .+.|+++....
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~--L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~g~~~  164 (227)
T 1mju_H           89 DDSAVYYCANKLGWFPYWGQGTL--VTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLV--KGYFPEPVTLTWNSGSLSS  164 (227)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEE--EEECSSCCBCCEEEEECCCC------CEEEEEEE--EEEBSSCCEEEEGGGTBCT
T ss_pred             ccCEEEEEEECCCCceEEcCcEE--EEEcCCCCCCCEEEEecCCccccCCCcEEEEEEe--ecEeCCCeEEEEecCCCcC
Confidence            99999999999864321 12223  34433 2223321111    11348899999997  3433432 33333433221


Q ss_pred             ce-eE-EEecC----CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        200 NL-LV-NLTNL----DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       200 ~~-~~-~~~~~----~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .. .. .....    ....+.|..+...+ |.|  +|.|.|..+.......+.+.
T Consensus       165 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y--~C~a~n~~~~~~~~~~~~~~  216 (227)
T 1mju_H          165 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSI--TCNVAHPASSTKVDKKIEPR  216 (227)
T ss_dssp             TEEECCCEEETTEEEEEEEEEECTTTTTT-SCC--EEEEEEGGGTEEEEEECCCC
T ss_pred             CcEECCceecCCeEEEEEEEEEchhhcCC-CeE--EEEEEECCCCcceEEEeCCC
Confidence            10 00 00000    12457888866667 999  99999987765444444433

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.50  E-value=5.2e-13  Score=99.07  Aligned_cols=166  Identities=14%  Similarity=0.074  Sum_probs=93.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccc--------------cc--cCCceEEe---CCceeEEEEecCCCCcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGET--------------LD--VGSERFSS---GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~--------------~~--~~~~~~~~---~~~~~~l~i~~~~~~d~  129 (261)
                      +.+.+|+.++|.|.+.+.+.+ .+.|++...+..              ..  ....++..   ......|.|.++..+|+
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   89 (246)
T 4dzb_B           11 VISKSGTSVKIECRSLDFQAT-TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS   89 (246)
T ss_dssp             EEEETTSCEEEEEEESSSCCC-SEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEeCCCcEEEEeEecCCCce-EEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHC
Confidence            667899999999999988777 899998321111              00  00123322   23355899999999999


Q ss_pred             eEEEEEEEcCCc----eEEeeEEEEEEeCC-CCCCCCcceEEe------ecCCeEEEEeecCCCCCCCeE-EEEEEEeCC
Q psy11549        130 GTLSCAAQNAIG----TQVTPCLYQVVLAG-KPQPPQNCSVRN------ETTSSVHISCTPGYDGGLPQT-FTLELYSAS  197 (261)
Q Consensus       130 g~y~C~~~~~~~----~~~~~~~~~v~~~~-~p~~p~~~~v~~------~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~  197 (261)
                      |.|.|.+.+..+    .......+.+.... .+.+|.. .+..      ..|..++|.|.+  .+..|.. .+.|+++..
T Consensus        90 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i-~~~~~~~~~~~~g~~v~L~C~~--~g~~p~~~~v~W~k~g~  166 (246)
T 4dzb_B           90 SFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEV-AVFEPSEAEISHTQKATLVCLA--TGFYPDHVELSWWVNGK  166 (246)
T ss_dssp             EEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEE-EEECCCHHHHHHHSEEEEEEEE--EEEBSSCEEEEEEETTE
T ss_pred             EEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCce-EeecCCchhccCCCcEEEEEEE--ccCcCCceEEEEEECCE
Confidence            999999987543    11222234343211 2223321 2211      238899999997  3434432 233444322


Q ss_pred             ccceeEEEec--------CCCC------cEEEcCCCCCC-ccEEEEEEEEEcCCCcCC
Q psy11549        198 DLNLLVNLTN--------LDTP------AFTLEDLGLDG-TVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       198 ~~~~~~~~~~--------~~~~------~~~i~~~~l~~-~~~Y~~~~~a~N~~G~~~  240 (261)
                      ..........        ....      .+.|......+ +|.|  +|.|.|.....+
T Consensus       167 ~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~Y--tC~v~~~~~~~~  222 (246)
T 4dzb_B          167 EVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHF--RCQVQFYGLSEN  222 (246)
T ss_dssp             EECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEE--EEEEEECCBCTT
T ss_pred             ECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeE--EEEEEecCCCCc
Confidence            1111111100        0112      25666644555 8999  999999887655

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.50  E-value=9.5e-13  Score=98.96  Aligned_cols=163  Identities=12%  Similarity=0.199  Sum_probs=94.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCC----CceeEEEEcCCccccc--c---------CCceEEe--CCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPP----ARSFKWKFNNSGETLD--V---------GSERFSS--GSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~----~~~~~W~~~~~~~~~~--~---------~~~~~~~--~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|++++|.|.+.+.+.    ...+.|++...+....  .         ...++..  ......|.|.++..+|+|.
T Consensus        25 ~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~  104 (268)
T 1x9q_A           25 LPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEAEDLGV  104 (268)
T ss_dssp             ECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCChhHCEE
Confidence            56789999999999988763    3489999864322110  0         1223332  2345589999999999999


Q ss_pred             EEEEEEcCCceE-EeeEEEEEEeCC---CC-CCCC------------cc------eEEeecCCeEEEEeecCCCCCCC-e
Q psy11549        132 LSCAAQNAIGTQ-VTPCLYQVVLAG---KP-QPPQ------------NC------SVRNETTSSVHISCTPGYDGGLP-Q  187 (261)
Q Consensus       132 y~C~~~~~~~~~-~~~~~~~v~~~~---~p-~~p~------------~~------~v~~~~~~~~~l~c~~~~~~~~p-~  187 (261)
                      |.|.+.+..+.. .....+.|....   .| .+|.            .+      .+....|+.++|.|..  .+..+ .
T Consensus       105 Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~--~~~~~~~  182 (268)
T 1x9q_A          105 YFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCVT--SGFTFGH  182 (268)
T ss_dssp             EEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEEE--ESSCGGG
T ss_pred             EEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEEe--cCccccc
Confidence            999999875421 122233333211   11 1111            01      1234579999999997  33332 2


Q ss_pred             EEEEEEEeC-Cccce----------------------eEEEec---CCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        188 TFTLELYSA-SDLNL----------------------LVNLTN---LDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       188 ~~~~~~~~~-~~~~~----------------------~~~~~~---~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      ....|++.. +....                      .+....   .....|.|.+++.+|+|.|  .|.|.|.
T Consensus       183 ~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~a~~~  254 (268)
T 1x9q_A          183 YWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIY--YCTGASY  254 (268)
T ss_dssp             CEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEE--EEEEEET
T ss_pred             cEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEE--EEEEccC
Confidence            344455432 21110                      111110   1124699999999999999  8888774

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.50  E-value=2.9e-13  Score=88.28  Aligned_cols=97  Identities=23%  Similarity=0.348  Sum_probs=69.9

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe--C-CceeEEEEecCCCCcCeEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS--G-SRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~-~~~~~l~i~~~~~~d~g~y~  133 (261)
                      .+|.+...+.. ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +.....++..  . .....|.|.++..+|+|.|+
T Consensus        14 ~~p~f~~~p~~-~~v~~G~~v~L~C~~~g~p~p-~v~W~k~~~~--~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   89 (116)
T 2kkq_A           14 RAPMFIYKPQS-KKVLEGDSVKLECQISAIPPP-KLFWKRNNEM--VQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYT   89 (116)
T ss_dssp             BCCCBSSCCCC-EEEETTEEEEEEEEBCCBSCC-EEEEEETTEE--CCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEeCCCc-EEEeCCCcEEEEEEEeccCCC-EEEEEECCEE--CcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEE
Confidence            45566555554 778899999999999998888 8999998743  2222233322  2 23447999999999999999


Q ss_pred             EEEEcCCceEEeeEEEEEEeCCCCCC
Q psy11549        134 CAAQNAIGTQVTPCLYQVVLAGKPQP  159 (261)
Q Consensus       134 C~~~~~~~~~~~~~~~~v~~~~~p~~  159 (261)
                      |.|.|..|.....  +.+.|..+|.+
T Consensus        90 C~a~N~~G~~~~~--~~l~V~~~p~~  113 (116)
T 2kkq_A           90 VSAVNEAGVTTCN--TRLDVTARPNQ  113 (116)
T ss_dssp             EEEEETTEEEEEE--EEEEEECCSCC
T ss_pred             EEEEcCCCeEEEE--EEEEEeCCCCC
Confidence            9999999887664  44444455543

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.50  E-value=4.3e-14  Score=106.30  Aligned_cols=119  Identities=18%  Similarity=0.217  Sum_probs=76.3

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCC-CcceeeeEEEEEEe------eceeecCceeEEEeeCCCcEEEEEEEeeCCC-Cc
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTK-GEATSNQLKLRVKY------APICKSDRIVIVGASRSESVDIHCAVEADPP-AR   90 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~-~~~~s~~~~l~V~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~   90 (261)
                      +.+|.|.+++.+|+|.|+|.+.+.. .........|.|..      +|.+.........+..|+.++|.|.+.+.++ +.
T Consensus        99 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~  178 (268)
T 3pl6_D           99 VSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  178 (268)
T ss_dssp             SEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCe
Confidence            4589999999999999999998742 22223445677764      3332211111012345899999999998665 44


Q ss_pred             eeEEEEcCCccccccC---------------CceEEeCCceeEEEEecCCCCc-CeEEEEEEEcCCce
Q psy11549         91 SFKWKFNNSGETLDVG---------------SERFSSGSRGSMLRYTPVTELD-YGTLSCAAQNAIGT  142 (261)
Q Consensus        91 ~~~W~~~~~~~~~~~~---------------~~~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~  142 (261)
                      .+.|++++..  +...               ...+..   .+.|.|.....+| .|.|+|.+.+....
T Consensus       179 ~v~W~~~g~~--l~~~~~~~~~~~~~~~~~~~~~~~~---~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          179 ELSWWVNGKE--VHSGVCTDPQPLKEQPALNDSRYSL---SSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             EEEEEESSSE--ECTTEEECSSCEESSTTCTTCCEEE---EEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEEEECCEE--CCCCeEeccccccccccCCCCcEEE---EEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            8999998742  2111               111111   2356777766666 99999999987543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.50  E-value=2.5e-13  Score=99.04  Aligned_cols=164  Identities=15%  Similarity=0.196  Sum_probs=96.0

Q ss_pred             EEeeCCCcEEEEEEEeeCC--CCceeEEEEcCCcccc----cc--------------CCceEEe----CCceeEEEEecC
Q psy11549         69 VGASRSESVDIHCAVEADP--PARSFKWKFNNSGETL----DV--------------GSERFSS----GSRGSMLRYTPV  124 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~----~~--------------~~~~~~~----~~~~~~l~i~~~  124 (261)
                      +.+..|++++|.|.+.+.+  .+ .+.|++.+.+...    ..              ...++..    ......|.|.++
T Consensus        10 ~~~~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (220)
T 1pz5_B           10 GLVQPGGSMKLSCVASGFTFSNY-WMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL   88 (220)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGS-EEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             EEEcCCCeEEEEEEEcCCccCCc-cEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence            5678999999999998765  34 8999986422110    00              0123332    123458999999


Q ss_pred             CCCcCeEEEEEEEcCCceE-E--eeEEEEEEeCCCCCCCCcceE----EeecCCeEEEEeecCCCCCCCeE-EEEEEEeC
Q psy11549        125 TELDYGTLSCAAQNAIGTQ-V--TPCLYQVVLAGKPQPPQNCSV----RNETTSSVHISCTPGYDGGLPQT-FTLELYSA  196 (261)
Q Consensus       125 ~~~d~g~y~C~~~~~~~~~-~--~~~~~~v~~~~~p~~p~~~~v----~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~  196 (261)
                      ..+|+|.|.|.+.+..+.. .  ....+.|.+ .++.+|.....    ....|+.++|.|.+  .+..|.. .+.|++..
T Consensus        89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~~  165 (220)
T 1pz5_B           89 RAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS-ATTTAPSVYPLVPGCSDTSGSSVTLGCLV--KGYFPEPVTVKWNYGA  165 (220)
T ss_dssp             CGGGCEEEEEEEECTTSSEEEECCCEEEEECS-SCCBCCEEEEECCCSCCSCSSSEEEEEEE--EEEBSSCCEEEEGGGT
T ss_pred             CHHHCEEEEEEEecCCcccceECCCEEEEEcc-CCCCCCeEEEcccccccCCCCcEEEEEEE--EEEeCCCeEEEEecCC
Confidence            9999999999999875321 1  223444432 22333322111    11358999999997  4443533 33344433


Q ss_pred             Cccc-eeE-EEecC----CCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        197 SDLN-LLV-NLTNL----DTPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       197 ~~~~-~~~-~~~~~----~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      .... ... .....    ....+.|..+..++ |.|  +|.|.|..|..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y--~C~a~n~~~~~  211 (220)
T 1pz5_B          166 LSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTV--ICNVAHPASKV  211 (220)
T ss_dssp             CCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCC--EEEEEEGGGTE
T ss_pred             cccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceE--EEEEEECCccE
Confidence            3210 000 00000    12457777766655 999  99999999953

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.50  E-value=7.9e-13  Score=83.64  Aligned_cols=93  Identities=16%  Similarity=0.296  Sum_probs=67.2

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      .+|.+...+.. ..+..|+.+.|.|.+.+.|.+ .+.|++++.... ......+........|.|.++..+|+|.|+|.+
T Consensus         5 ~~P~i~~~~~~-~~v~~G~~~~l~C~~~g~p~p-~v~W~~~g~~~~-~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   81 (99)
T 3puc_A            5 SKPVIVTGLQD-TTVSSDSVAKFAVKATGEPRP-TAIWTKDGKAIT-QGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTV   81 (99)
T ss_dssp             EEEEEEECCCC-EEEESSSCEEEEEEEEEESCC-EEEEEETTEECC-SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEecCcc-EEEeCCCcEEEEEEEEecCCC-EEEEEECCEECc-CCCCEEEEEeCCEEEEEECCCCcccCEEEEEEE
Confidence            34454444443 678899999999999998888 899999774211 112222333444557999999999999999999


Q ss_pred             EcCCceEEeeEEEEEE
Q psy11549        137 QNAIGTQVTPCLYQVV  152 (261)
Q Consensus       137 ~~~~~~~~~~~~~~v~  152 (261)
                      .|..|.......+.|.
T Consensus        82 ~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           82 KNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCcEeEEEEEEEE
Confidence            9999887775555543

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.50  E-value=2.4e-13  Score=98.82  Aligned_cols=143  Identities=17%  Similarity=0.174  Sum_probs=94.8

Q ss_pred             CCCCeeccCCCC-ceEEEE---CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCc
Q psy11549          1 MAGGIPLAHNTS-ARIILS---NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSES   76 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~---~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~   76 (261)
                      +|||.+|..+.. +..+..   +++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|....  .. .....+..
T Consensus        53 ~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~P~~p~--~~-~~~~~~~~  128 (215)
T 3mtr_A           53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQE-SLEFILVQADTPSSPS--ID-QVEPYSST  128 (215)
T ss_dssp             EETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEECSSCEE-EEEEEEEECCCCCCCE--EE-EEEEETTE
T ss_pred             EECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEEECCCce-EEEEEEEECCCCCCCc--ce-EEEEecce
Confidence            478999975532 233332   3589999999999999999999999987 6678888877664321  11 22345778


Q ss_pred             EEEEEEEeeCC--CCc---eeEEEEcCCccccccCCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         77 VDIHCAVEADP--PAR---SFKWKFNNSGETLDVGSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        77 ~~l~C~~~~~~--~~~---~~~W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      +.|.|......  .+.   .+.|...+.. .+  ....+..  ......+.|.++...+.|.|+|.|.|..|....+..+
T Consensus       129 ~~l~w~~p~~~~~~pi~~y~v~~~~~~~~-~w--~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~  205 (215)
T 3mtr_A          129 AQVQFDEPEATGGVPILKYKAEWRAVGEE-VW--HSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS  205 (215)
T ss_dssp             EEEEEECCSCCCSSCEEEEEEEEEETTCC-CC--EEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCE
T ss_pred             EEEEEecCCccCCCceEEEEEEEEECCCC-cc--cccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccce
Confidence            89999754321  122   3777766532 11  0111111  1112479999999999999999999999876654344


Q ss_pred             E
Q psy11549        150 Q  150 (261)
Q Consensus       150 ~  150 (261)
                      .
T Consensus       206 ~  206 (215)
T 3mtr_A          206 E  206 (215)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.49  E-value=1.3e-14  Score=105.69  Aligned_cols=120  Identities=17%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEE--EEEeeceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKL--RVKYAPICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFKWK   95 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l--~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~W~   95 (261)
                      ++|.|.+++.+|+|.|+|.+.|..+.. ....+.+  .+..+|.+...... .....|+.+.|.|.+.+. |.+..+.|+
T Consensus        76 ~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~-~~~~~g~~~~L~C~~~g~~P~~~~v~W~  154 (218)
T 2rgs_A           76 STLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPP-AEQLSRKDVSLTCLVVGFNPGDISVEWT  154 (218)
T ss_dssp             EEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCC-GGGTTSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCC-hHHhcCCceEEEEEEEeeeCCCcEEEEE
Confidence            479999999999999999999987653 1222221  33455554322111 111258999999999984 555589999


Q ss_pred             EcCCccccccCCceEE-eCCc----eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         96 FNNSGETLDVGSERFS-SGSR----GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        96 ~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +++... .......+. ..++    .+.|.+.....+|.|.|+|.|.|...
T Consensus       155 k~g~~~-~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l  204 (218)
T 2rgs_A          155 SNGHTE-ENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL  204 (218)
T ss_dssp             ETTEEE-CCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred             ECCEec-cCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence            987421 111011111 1111    12344544444568999999999754

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.49  E-value=2.1e-13  Score=98.74  Aligned_cols=165  Identities=17%  Similarity=0.189  Sum_probs=95.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc---------------cCCceEEe----CCceeEEEEecCCCCc
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD---------------VGSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      +.+..|++++|.|.+.+.+. ...+.|++...+....               ....++..    ......|.|.++..+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D   89 (210)
T 3d9a_H           10 SLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTED   89 (210)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCccc
Confidence            45679999999999998752 2389999864221110               01123332    1234589999999999


Q ss_pred             CeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceE----EeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcccee-
Q psy11549        129 YGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSV----RNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLL-  202 (261)
Q Consensus       129 ~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v----~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~-  202 (261)
                      +|.|.|.+.+.. .......+.|.. .++.+|.....    ....|+.++|.|.+  .+..|.. .+.|++........ 
T Consensus        90 ~G~Y~C~~~~~~-~~~~~~~l~V~~-~~~~~P~v~~~~~~~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~~~~~~~~~  165 (210)
T 3d9a_H           90 TATYYCANWDGD-YWGQGTLVTVSA-AKTTPPSVYPLAPGSAAQTNSMVTLGCLV--KGYFPEPVTVTWNSGSLSSGVHT  165 (210)
T ss_dssp             CEEEEEEETTSS-CBCCCEEEEECC-CCCBCCEEEEECCTTSCCCSSEEEEEEEE--EEEBSSCCEEEEGGGTBCTTEEE
T ss_pred             CEEEEEEEecCc-ccccceEEEecc-CCCCCCEEEEecCCcccccCCcEEEEEEE--eeEecCCcEEEEeeCCcccceEE
Confidence            999999999863 111222333332 22333321111    11358999999997  4443533 33344433221100 


Q ss_pred             E-EEecC----CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549        203 V-NLTNL----DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       203 ~-~~~~~----~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      . .....    ....+.|..+..++ |.|  +|.|.|..|...
T Consensus       166 ~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y--~C~a~n~~~~~~  205 (210)
T 3d9a_H          166 FPAVLQSDLYTLSSSVTVPSSTWPS-ETV--TCNVAHPASSTK  205 (210)
T ss_dssp             CCCEEETTEEEEEEEEEEEGGGTTT-SCC--EEEEEEGGGTEE
T ss_pred             cCCccCCCcEEEEEEEEEcHHHcCC-CcE--EEEEEeCCCCcc
Confidence            0 00111    11347777766656 999  999999998643

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.49  E-value=3.6e-12  Score=93.09  Aligned_cols=168  Identities=15%  Similarity=0.174  Sum_probs=96.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc----------------cCCceEEeC----CceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD----------------VGSERFSSG----SRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~----------------~~~~~~~~~----~~~~~l~i~~~~~~  127 (261)
                      +.+..|+.++|.|.+.+.+. ...+.|++...+....                ....++...    .....|.|.++..+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (223)
T 1dee_B           10 GVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE   89 (223)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHH
Confidence            55779999999999987652 2379999864321110                011233322    23568999999999


Q ss_pred             cCeEEEEEEEcCCc----eEEeeEEEEEEeCC-CCCCCCcceEE----eecCCeEEEEeecCCCCCCCeE-EEEEEE-eC
Q psy11549        128 DYGTLSCAAQNAIG----TQVTPCLYQVVLAG-KPQPPQNCSVR----NETTSSVHISCTPGYDGGLPQT-FTLELY-SA  196 (261)
Q Consensus       128 d~g~y~C~~~~~~~----~~~~~~~~~v~~~~-~p~~p~~~~v~----~~~~~~~~l~c~~~~~~~~p~~-~~~~~~-~~  196 (261)
                      |+|.|.|.+.+..+    .........+.|.. ++.+|......    ...|..++|.|.+  .+..|.. .+.|++ +.
T Consensus        90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~~g  167 (223)
T 1dee_B           90 DTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLA--QDFLPDSITFSWKYKNN  167 (223)
T ss_dssp             GCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEE--EEEBSSCCEEEEEETTS
T ss_pred             HCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEE--EEEeCCCeEEEeEccCC
Confidence            99999999998642    11111122344442 33444332221    1358899999997  4443433 334444 32


Q ss_pred             CccceeE---EEecC----CCCcEEEcCCCC--CCccEEEEEEEEEcCCCcCC
Q psy11549        197 SDLNLLV---NLTNL----DTPAFTLEDLGL--DGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       197 ~~~~~~~---~~~~~----~~~~~~i~~~~l--~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      .......   .....    ....+.|.....  .+++.|  +|.|.|..|...
T Consensus       168 ~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y--~C~v~n~~~~~~  218 (223)
T 1dee_B          168 SDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHV--VCKVQHPNGNKE  218 (223)
T ss_dssp             CBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEE--EEEEECTTCCEE
T ss_pred             CccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEE--EEEEEeCCCCCc
Confidence            2211100   00000    113467766444  668999  999999998653

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.49  E-value=9.1e-13  Score=99.70  Aligned_cols=164  Identities=15%  Similarity=0.160  Sum_probs=94.6

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----cC------------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----VG------------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----~~------------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +.+.+|++++|.|.+.+.. +...+.|++...+....    ..            ..++..    ......|.|.++..+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (280)
T 3fku_X           10 EVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSE   89 (280)
T ss_dssp             CEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCST
T ss_pred             EEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            5678999999999998752 22379998743221110    00            012221    233458999999999


Q ss_pred             cCeEEEEEEEcC---------CceEEeeEEEEEEe-------------CCCCCCCCcceEEeecCCeEEEEeecCCCCCC
Q psy11549        128 DYGTLSCAAQNA---------IGTQVTPCLYQVVL-------------AGKPQPPQNCSVRNETTSSVHISCTPGYDGGL  185 (261)
Q Consensus       128 d~g~y~C~~~~~---------~~~~~~~~~~~v~~-------------~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~  185 (261)
                      |+|.|+|.+.+.         .........+.|..             ..+|...+...+....|+.++|.|..  .+..
T Consensus        90 DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~C~~--~~~~  167 (280)
T 3fku_X           90 DTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLTCTG--NSNN  167 (280)
T ss_dssp             TCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEEEEC--CCCC
T ss_pred             hCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEEEEe--cCCC
Confidence            999999999986         11112222333322             01222111112455679999999997  3312


Q ss_pred             C-eEEEEEEEeC-Cccce---------------eEEE-ecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        186 P-QTFTLELYSA-SDLNL---------------LVNL-TNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       186 p-~~~~~~~~~~-~~~~~---------------~~~~-~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      + ..+..||+.. +....               .+.. .......|+|.+++.+|.|.|  .|.+.|..
T Consensus       168 ~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y--~C~~~~~~  234 (280)
T 3fku_X          168 VGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADY--YCSTWDSS  234 (280)
T ss_dssp             CCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEE--EEEEEETT
T ss_pred             CCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEE--EEEEecCC
Confidence            2 2234445432 21111               1111 111223599999999999999  88888865

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.49  E-value=8.3e-14  Score=103.31  Aligned_cols=118  Identities=15%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC---CcceeeeEEEEEEe------eceeecCceeEEEeeCCCcEEEEEEEeeCCC-Cc
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK---GEATSNQLKLRVKY------APICKSDRIVIVGASRSESVDIHCAVEADPP-AR   90 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~---~~~~s~~~~l~V~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~   90 (261)
                      +|.|.+++.+|+|.|+|.+.+..   .......+.|.|..      +|.+.........+..|+.++|.|.+.+.++ +.
T Consensus        77 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~  156 (245)
T 4ei6_B           77 TLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  156 (245)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCe
Confidence            89999999999999999998532   22223456777763      3332211111012345899999999998554 44


Q ss_pred             eeEEEEcCCccccccCCceEEe---------CCc----eeEEEEecCCCCc-CeEEEEEEEcCCc
Q psy11549         91 SFKWKFNNSGETLDVGSERFSS---------GSR----GSMLRYTPVTELD-YGTLSCAAQNAIG  141 (261)
Q Consensus        91 ~~~W~~~~~~~~~~~~~~~~~~---------~~~----~~~l~i~~~~~~d-~g~y~C~~~~~~~  141 (261)
                      .+.|++++..  +.... ....         .+.    .+.|.|.....+| .|.|+|.+.+...
T Consensus       157 ~v~W~~~g~~--l~~~~-~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l  218 (245)
T 4ei6_B          157 ELSWWVNGKE--VHSGV-CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL  218 (245)
T ss_dssp             EEEEEETTEE--ECTTE-EECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             EEEEEECCEE--CCCCc-ccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence            8999997642  21111 1100         011    1347788777777 8999999998643

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.49  E-value=2.3e-12  Score=92.22  Aligned_cols=156  Identities=15%  Similarity=0.135  Sum_probs=93.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCc-eeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         69 VGASRSESVDIHCAVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      +.+..|++++|.|.+ +.|.|. .|.|++.+..    +  .+.........|.|.+++.+|.|.|.|.+.+..+....  
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~----l--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~--   87 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTS----L--GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQH--   87 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTT----T--CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEE--
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeecccc----c--CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEE--
Confidence            678899999999999 776653 7999875421    1  12222344568999999999999999999998776555  


Q ss_pred             EEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCe----EEEEEEEeCCccc-eeE---EEe-------cCCCCc
Q psy11549        148 LYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ----TFTLELYSASDLN-LLV---NLT-------NLDTPA  212 (261)
Q Consensus       148 ~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~----~~~~~~~~~~~~~-~~~---~~~-------~~~~~~  212 (261)
                      .+.|.|..+|..+.........++.. |.|.+  .+..|.    .-+.|+++..... ...   ...       ......
T Consensus        88 ~~~ltV~~~P~~~~i~~~~~~~g~~~-l~C~a--~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~  164 (210)
T 1gsm_A           88 TVQLLVYAFPNQLTVSPAALVPGDPE-VACTA--HKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVL  164 (210)
T ss_dssp             EEEEEEEBCCSEEEEESSSBCTTCCE-EEEEE--EEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCC
T ss_pred             EEEEEEEecCCCcEEccceEEeCCce-EEEEe--CCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceE
Confidence            55555656665322100012346677 99997  444452    2233444432221 111   110       012234


Q ss_pred             EEEc------CCCCCCccEEEEEEEEEcCCCc
Q psy11549        213 FTLE------DLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       213 ~~i~------~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      +.++      ..+-.+++.|  +|.|.+.+=.
T Consensus       165 ~~vts~~~~~~~~~D~~~~~--tC~a~~~L~~  194 (210)
T 1gsm_A          165 FRVTERWRLPPLGTPVPPAL--YCQATMRLPG  194 (210)
T ss_dssp             EEEEEEEECCCCCSSCCSEE--EEEEEEEETT
T ss_pred             EEEEEEEeecCCcccCCceE--EEEEEeeCCC
Confidence            5543      3234555788  9999998843

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.49  E-value=3.6e-13  Score=98.61  Aligned_cols=163  Identities=12%  Similarity=0.102  Sum_probs=94.7

Q ss_pred             EEeeCCCcEEEEEEEeeCC--CCceeEEEEcCCccccc----------------cCCceEEeC----CceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVEADP--PARSFKWKFNNSGETLD----------------VGSERFSSG----SRGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~~----------------~~~~~~~~~----~~~~~l~i~~~~~  126 (261)
                      +.+..|++++|.|.+.+.+  .+ .+.|++...+....                ....++...    .....|.|.++..
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (225)
T 1op3_H           10 GLVKAGGSLILSCGVSNFRISAH-TMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (225)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGS-CEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eEecCCCCEEEEEEecCcccCCc-eEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            5678999999999998765  34 79999864221110                011233322    3356899999999


Q ss_pred             CcCeEEEEEEEcCCc-----e---EEeeEEEEEEeCCCCCCCCcceEE----eecCCeEEEEeecCCCCCCCeE-EEEEE
Q psy11549        127 LDYGTLSCAAQNAIG-----T---QVTPCLYQVVLAGKPQPPQNCSVR----NETTSSVHISCTPGYDGGLPQT-FTLEL  193 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~-----~---~~~~~~~~v~~~~~p~~p~~~~v~----~~~~~~~~l~c~~~~~~~~p~~-~~~~~  193 (261)
                      +|+|.|.|.+.+..+     .   ......+.|.. .++.+|......    ...|+.++|.|.+  .+..|.. .+.|+
T Consensus        89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~-~~~~~P~v~~~~~~~~~~~g~~v~L~C~~--~g~~P~p~~v~W~  165 (225)
T 1op3_H           89 EDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSP-ASTKGPSVFPLAPSSKSTSGGTAALGCLV--KDYFPEPVTVSWN  165 (225)
T ss_dssp             GGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEES-CSCBCCEEEEECCCTTCCCCCEEEEEEEE--EEEBSSCCEEECC
T ss_pred             hhCEEEEEEEecCCCccccccceeecCCEEEeccc-CCCcCCeEEEecccccccCCCcEEEEEEE--EeEECCCeEEEEe
Confidence            999999999998754     1   11223444443 122333221111    1358999999997  3443432 33333


Q ss_pred             EeCCccc-eeE-EEecCC-----CCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        194 YSASDLN-LLV-NLTNLD-----TPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       194 ~~~~~~~-~~~-~~~~~~-----~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      +...... ... ......     ...+.|..+...+ |.|  +|.|.|..+.
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y--~C~a~n~~~~  214 (225)
T 1op3_H          166 SGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY--ICNVNHKPSN  214 (225)
T ss_dssp             TTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCC--CEEEEEGGGT
T ss_pred             cCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcE--EEEEEcCCCC
Confidence            3332211 011 111111     1246787766667 999  9999997753

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.48  E-value=2.3e-13  Score=100.76  Aligned_cols=124  Identities=16%  Similarity=0.198  Sum_probs=76.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC-c-----ceeeeEEEEEEee-------ceeecCceeEEEeeCCCcEEEEEEEeeC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG-E-----ATSNQLKLRVKYA-------PICKSDRIVIVGASRSESVDIHCAVEAD   86 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~-~-----~~s~~~~l~V~~~-------p~~~~~~~~~~~~~~g~~~~l~C~~~~~   86 (261)
                      .+|.|.+++.+|+|.|+|.+.+... .     .....+.|.|...       |...........+..|+.++|.|.+.+.
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~  159 (242)
T 1hxm_B           80 STLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKF  159 (242)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeE
Confidence            4899999999999999999987631 1     1123467888753       2221111111224469999999999987


Q ss_pred             -CCCceeEEEEcCCccccccC-CceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         87 -PPARSFKWKFNNSGETLDVG-SERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        87 -~~~~~~~W~~~~~~~~~~~~-~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                       |.+..+.|++++........ .......+   ..+.|.|..... + |.|+|.+.|..+....
T Consensus       160 ~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~  221 (242)
T 1hxm_B          160 FPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGV  221 (242)
T ss_dssp             SSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGS
T ss_pred             ECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCc
Confidence             43458999998741111110 01111111   123677876654 4 9999999998776544

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.48  E-value=7.3e-14  Score=103.66  Aligned_cols=119  Identities=16%  Similarity=0.175  Sum_probs=76.3

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC---cceeeeEEEEEEe------eceeecCceeEEEeeCCCcEEEEEEEeeCCCC-c
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG---EATSNQLKLRVKY------APICKSDRIVIVGASRSESVDIHCAVEADPPA-R   90 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~---~~~s~~~~l~V~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~   90 (261)
                      +|.|.+++.+|+|.|+|.+.+..+   ......+.|.|..      +|.+.........+..|+.++|.|.+.+.+++ .
T Consensus        78 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~  157 (246)
T 4dzb_B           78 TLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  157 (246)
T ss_dssp             EEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCce
Confidence            899999999999999999987643   1223445677763      33322111111123459999999999987653 4


Q ss_pred             eeEEEEcCCccccccCCceEEe---------CCc----eeEEEEecCCCCc-CeEEEEEEEcCCce
Q psy11549         91 SFKWKFNNSGETLDVGSERFSS---------GSR----GSMLRYTPVTELD-YGTLSCAAQNAIGT  142 (261)
Q Consensus        91 ~~~W~~~~~~~~~~~~~~~~~~---------~~~----~~~l~i~~~~~~d-~g~y~C~~~~~~~~  142 (261)
                      .+.|++++..  +.... ....         .+.    .+.|.|.....+| .|.|+|.|.+....
T Consensus       158 ~v~W~k~g~~--l~~~~-~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~  220 (246)
T 4dzb_B          158 ELSWWVNGKE--VHSGV-CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  220 (246)
T ss_dssp             EEEEEETTEE--ECTTE-EECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EEEEEECCEE--CCCCc-ccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence            8999997642  21111 1000         011    1247788777777 99999999987544

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=3.5e-13  Score=85.35  Aligned_cols=89  Identities=20%  Similarity=0.319  Sum_probs=66.4

Q ss_pred             EEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEE
Q psy11549         55 VKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        55 V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +..+|.+...+.. ..+..|+.+.|.|.+.+.|.| .+.|++++..  +...  ..........|.|.++..+|+|.|+|
T Consensus         8 ~~~~P~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p-~v~W~~~g~~--~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C   81 (99)
T 2yr3_A            8 MEVAPSFSSVLKD-CAVIEGQDFVLQCSVRGTPVP-RITWLLNGQP--IQYA--RSTCEAGVAELHIQDALPEDHGTYTC   81 (99)
T ss_dssp             CCEEEEEEECCCC-EEECTTCCEEEECEEEEESCC-CCEEEESSSB--CSSC--CCEEETTEEEEEECSCCTTCCBCEEE
T ss_pred             cccCCceeecCCC-CEEeCCCeEEEEEEEeeeCCC-eEEEEECCEE--Cccc--ceEeeCCeEEEEECCCChhhCEEEEE
Confidence            4456666655444 678899999999999999888 8999998743  2111  22233345689999999999999999


Q ss_pred             EEEcCCceEEeeEEE
Q psy11549        135 AAQNAIGTQVTPCLY  149 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~  149 (261)
                      .|.|..|.......+
T Consensus        82 ~a~N~~g~~~~~~~l   96 (99)
T 2yr3_A           82 LAENALGQVSCSAWV   96 (99)
T ss_dssp             EEECSSCEEEEECCE
T ss_pred             EEEECCCeEEEEEEE
Confidence            999999887664333

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.46  E-value=7.1e-13  Score=91.06  Aligned_cols=97  Identities=16%  Similarity=0.254  Sum_probs=71.9

Q ss_pred             EEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe---CCceeEEEEecCCCC
Q psy11549         51 LKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS---GSRGSMLRYTPVTEL  127 (261)
Q Consensus        51 ~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~  127 (261)
                      +.+.+..+|.+...... +.+..|+.+.|.|.+.+.|.+ .+.|++++..  +.. ..++..   ......|.|.++...
T Consensus        34 ~~~~v~~~P~~~~~~~~-~~v~~G~~v~L~C~~~g~P~p-~v~W~k~g~~--~~~-~~~~~~~~~~~~~~~L~I~~v~~~  108 (154)
T 1fhg_A           34 AEEKPHVKPYFTKTILD-MEVVEGSAARFDCKVEGYPDP-EVMWFKDDNP--VKE-SRHFQIDYDEEGNCSLTISEVCGD  108 (154)
T ss_dssp             CCCCCCEEEEEEECCCC-EEEETTSCEEEEEEEEEESCC-EEEEEETTEE--CCC-SSSEEEEECTTCEEEEEESSCCGG
T ss_pred             hcccCCCCCeEEccCCc-EEEeCCCeEEEEEEEEEecCC-EEEEEECCEE--CCC-CCcEEEEECCCCeEEEEECCCChh
Confidence            34555567777765554 778899999999999999988 8999998742  222 222222   233468999999999


Q ss_pred             cCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549        128 DYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus       128 d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      |+|.|+|.|.|..|.......+.|.
T Consensus       109 D~G~Y~C~a~N~~G~~~~~~~l~V~  133 (154)
T 1fhg_A          109 DDAKYTCKAVNSLGEATCTAELLVE  133 (154)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCEEEEEEEEECCCeEEEEEEEEEe
Confidence            9999999999999987775444444

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.46  E-value=5.9e-12  Score=93.15  Aligned_cols=170  Identities=16%  Similarity=0.110  Sum_probs=97.1

Q ss_pred             EEeeCCCcEEEEEEEeeC--CCCceeEEEEcCCccccc--c--------------CCceEEeC----CceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVEAD--PPARSFKWKFNNSGETLD--V--------------GSERFSSG----SRGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~--~--------------~~~~~~~~----~~~~~l~i~~~~~  126 (261)
                      +.+..|++++|.|.+.+.  +.+ .+.|++...+....  .              ...++...    .....|.|.++..
T Consensus        11 v~~~~G~~v~L~C~~~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   89 (242)
T 1hxm_B           11 STKTLSKTARLECVVSGITISAT-SVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (242)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTS-CEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             EEecCCCcEEEEEEeCCccccCc-eEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCc
Confidence            678899999999999875  334 79999854221110  0              12333322    1356899999999


Q ss_pred             CcCeEEEEEEEcCCc-----e--EEeeEEEEEEeCC-----CCCC----CCcceEEeecCCeEEEEeecCCCCCCCe-EE
Q psy11549        127 LDYGTLSCAAQNAIG-----T--QVTPCLYQVVLAG-----KPQP----PQNCSVRNETTSSVHISCTPGYDGGLPQ-TF  189 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~-----~--~~~~~~~~v~~~~-----~p~~----p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~  189 (261)
                      +|+|.|.|.+.+...     .  ......+.|....     +|.+    |....  ...|+.++|.|.+  .+..|. ..
T Consensus        90 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~--~~~g~~v~L~C~~--~g~~P~~~~  165 (242)
T 1hxm_B           90 QDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAE--TKLQKAGTYLCLL--EKFFPDVIK  165 (242)
T ss_dssp             GGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGG--GGSSSCEEEEEEE--EEESSCCEE
T ss_pred             ccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhh--cccCCCceEEEEE--eeEECCCeE
Confidence            999999999987521     1  1122344444321     1211    11111  1248899999997  444453 33


Q ss_pred             EEEEEeCC-cc-ceeE-EEecCCC-----CcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        190 TLELYSAS-DL-NLLV-NLTNLDT-----PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       190 ~~~~~~~~-~~-~~~~-~~~~~~~-----~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      +.|++... .. .... .......     ..+.|..  ....|.|  +|.|.|..|....+..+.+
T Consensus       166 v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~--~~~~g~y--~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          166 IHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPE--KSLDKEH--RCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECT--GGGGSCE--EEEEEETTSGGGSCEEEEE
T ss_pred             EEEEcCCCEeecCccccceecCCCcEEEEEEEEEcc--ccCCCEE--EEEEEeCCCCCCceeEeec
Confidence            44445443 11 1010 0111111     3567766  3324889  9999999997765554443

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.46  E-value=3.1e-13  Score=98.26  Aligned_cols=121  Identities=16%  Similarity=0.156  Sum_probs=74.3

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCc--ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCceeE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGE--ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PPARSFK   93 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~--~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~~   93 (261)
                      +|.|.+++.+|+|.|+|.+.+..+.  .....+.|.|..    +|.+...... ..+..|+.++|.|.+.+. |.+..+.
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~  157 (215)
T 1c5d_H           79 FLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPG-CGDTTSSTVTLGCLVKGYFPEPVTVT  157 (215)
T ss_dssp             EEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCC-SSCCCCSSEEEEEEEEEEBSSCCEEE
T ss_pred             EEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCC-hhhccCCcEEEEEEEeeeEcCCcEEE
Confidence            8999999999999999999886422  112346788863    2333211111 124579999999999987 5555899


Q ss_pred             EEEcCCccccccCCceEEeCCceeEE--EEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         94 WKFNNSGETLDVGSERFSSGSRGSML--RYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        94 W~~~~~~~~~~~~~~~~~~~~~~~~l--~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      |++++.....  .............+  .+.....++ |.|+|.|.|..+....
T Consensus       158 W~~~g~~~~~--~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~  208 (215)
T 1c5d_H          158 WNSGALSSDV--HTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKV  208 (215)
T ss_dssp             EGGGTTCCSC--CBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEE
T ss_pred             EccCCccCce--EecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccE
Confidence            9987642111  11111111121111  123333355 9999999998776543

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.46  E-value=4.2e-13  Score=98.71  Aligned_cols=122  Identities=11%  Similarity=0.122  Sum_probs=74.4

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC-------cceeeeEEEEEE----eeceeecCceeEEEeeCCCcEEEEEEEeeCCC-
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG-------EATSNQLKLRVK----YAPICKSDRIVIVGASRSESVDIHCAVEADPP-   88 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~-------~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-   88 (261)
                      +|.|.+++.+|+|.|.|.+.+..+       ........|.|.    .+|.+...... ..+..|+.++|.|.+.+.++ 
T Consensus        84 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~~~~P~  162 (232)
T 3qhz_H           84 VLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPE  162 (232)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC--------CEEEEEEEEEEEBSS
T ss_pred             EEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEeccc-ccccCCCcEEEEEEEeeEeCC
Confidence            699999999999999999987631       112334567775    23444311111 23456999999999998654 


Q ss_pred             CceeEEEEcCCccccccCCceEEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         89 ARSFKWKFNNSGETLDVGSERFSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        89 ~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +..+.|++++........ ......+    ..+.|.|......| |.|+|.|.+..+....
T Consensus       163 ~~~v~W~~~g~~~~~~~~-~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~  221 (232)
T 3qhz_H          163 PVTVSWNSGALTSGVHTF-PAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  221 (232)
T ss_dssp             CCEEEEGGGTBCTTEEEC-CCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEE
T ss_pred             CeEEEEEECCEecceeec-cceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccE
Confidence            557889887632111100 0011111    12468888888888 9999999998765544

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.46  E-value=5.6e-13  Score=99.74  Aligned_cols=120  Identities=16%  Similarity=0.230  Sum_probs=77.5

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcc--eeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCcee
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEA--TSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD-PPARSF   92 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~--~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~~   92 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+..  ....+.|.|..    +|.+...... ..+..|+.++|.|.+.+. |.+..+
T Consensus        85 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~v~~g~~v~L~C~~~g~~P~~i~v  163 (261)
T 2xqy_G           85 VYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTL  163 (261)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCC-CC--CCSEEEEEEEEEEEBSSCCEE
T ss_pred             EEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCC-ccccCCCcEEEEEEEEeEeCCCCEE
Confidence            489999999999999999998864311  12345777764    3433321111 124579999999999986 555589


Q ss_pred             EEEEcCCccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         93 KWKFNNSGETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        93 ~W~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      .|++++......... .....+   ..+.|.|.....+| |.|+|.|.|....
T Consensus       164 ~W~k~g~~~~~~~~~-~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~  214 (261)
T 2xqy_G          164 TWNSGSLSSGVHTFP-AVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS  214 (261)
T ss_dssp             EEGGGTCCTTEEECC-CEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred             EEecCCCcCceEecC-ceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence            999876432111111 111111   13468898888888 9999999986544

>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III module, beta-sheet sandwich, cell membrane, glycoprotein, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.46  E-value=6.3e-13  Score=85.57  Aligned_cols=92  Identities=23%  Similarity=0.264  Sum_probs=71.0

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcccee-EEEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLL-VNLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      .+|.+|..+.+. ...+.+.|.|.++.+++.|+. |.+.|+........ ..........++|.+  |.++..|+|++.|
T Consensus         7 ~~P~pP~~~~~~-~~~~sv~L~W~p~~dggsPI~~Y~I~yr~~~~~~w~~~~~~~~~~~~~~l~~--L~p~t~Y~frV~A   83 (114)
T 2kbg_A            7 REPSPPSIHGQP-SSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEH--LQWTMGYEVQITA   83 (114)
T ss_dssp             CCCCSCCEECCB-CSTTCEEEEECCCCCSSSCCSEEEEEEEESSCCSCCEEEEEETTTCCEEECC--CCTTCCEEEEEEE
T ss_pred             CCccCCcccccc-cCCCEEEEEEECCCCCCCcccEEEEEEEeCCCCCcEEeEEcCCCcCEEEEcC--CCCCCEEEEEEEE
Confidence            567777655443 579999999998888999976 99999886443211 122344567899999  9999999999999


Q ss_pred             EcCCCcCCceeeeeeee
Q psy11549        233 VNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~  249 (261)
                      .|.+|.|++|.....+.
T Consensus        84 ~N~~G~s~pS~~~~~T~  100 (114)
T 2kbg_A           84 ANRLGYSEPTVYEFSMP  100 (114)
T ss_dssp             ECTTSCEEEEEEEECCC
T ss_pred             EeCCcCcCCcCCEEEcC
Confidence            99999999998654443

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.45  E-value=1.4e-13  Score=101.72  Aligned_cols=120  Identities=13%  Similarity=0.174  Sum_probs=75.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC--CCcceeeeEEEEEEe------eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCce
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT--KGEATSNQLKLRVKY------APICKSDRIVIVGASRSESVDIHCAVEAD-PPARS   91 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~--~~~~~s~~~~l~V~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~~   91 (261)
                      +|.|.+++.+|+|.|+|.+.+.  ........+.|.|..      +|.+.........+..|+.++|.|.+.+. |.+..
T Consensus        76 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  155 (240)
T 3q5y_A           76 EMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVE  155 (240)
T ss_dssp             EEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred             EEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeE
Confidence            7999999999999999999733  222223445677763      33322111110123458999999999984 44557


Q ss_pred             eEEEEcCCccccccCCce----EEeCCc----eeEEEEecCCCCc-CeEEEEEEEcCCce
Q psy11549         92 FKWKFNNSGETLDVGSER----FSSGSR----GSMLRYTPVTELD-YGTLSCAAQNAIGT  142 (261)
Q Consensus        92 ~~W~~~~~~~~~~~~~~~----~~~~~~----~~~l~i~~~~~~d-~g~y~C~~~~~~~~  142 (261)
                      +.|++++..  +......    ....+.    .+.|.|.....+| .|.|+|.|.+....
T Consensus       156 v~W~~~g~~--l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          156 LSWWVNGKE--VHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             EEEEETTEE--ECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEEECCEE--CcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            999998742  2111100    111111    2348888888888 67999999986543

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.45  E-value=1.2e-12  Score=83.05  Aligned_cols=81  Identities=15%  Similarity=0.287  Sum_probs=60.4

Q ss_pred             EEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         68 IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      .+.+..|+.+.|.|.+.+.|.+ .+.|++++...........+........|.|.++..+|+|.|+|.|.|..|......
T Consensus        17 ~~~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~   95 (100)
T 3caf_A           17 LHAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTY   95 (100)
T ss_dssp             EEEECTTCCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             EEEecCCCEEEEEEEccccCCC-EEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEE
Confidence            4778899999999999999888 799999874322211111123333345799999999999999999999998876644


Q ss_pred             EE
Q psy11549        148 LY  149 (261)
Q Consensus       148 ~~  149 (261)
                      .+
T Consensus        96 ~l   97 (100)
T 3caf_A           96 HL   97 (100)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.45  E-value=2e-13  Score=101.87  Aligned_cols=120  Identities=11%  Similarity=0.123  Sum_probs=65.4

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCc------------ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGE------------ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAV   83 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~------------~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~   83 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+.            .....+.|.|..    +|.+...... ..+..|+.++|.|.+
T Consensus        79 ~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~-~~~~~g~~v~L~C~~  157 (257)
T 3bn9_D           79 LYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLV  157 (257)
T ss_dssp             EEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC------------CCCEE
T ss_pred             EEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCc-ccccCCCcEEEEEEE
Confidence            38999999999999999999887641            112345788864    3544332222 234679999999999


Q ss_pred             eeC-CCCceeEEEEcCCccccccCCceEEeCCc----eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         84 EAD-PPARSFKWKFNNSGETLDVGSERFSSGSR----GSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        84 ~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      .+. |.+..+.|++++....... .......+.    .+.|.|.+...+| |.|+|.|.|....
T Consensus       158 ~g~~P~pi~v~W~k~g~~~~~~~-~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~  219 (257)
T 3bn9_D          158 KDYFPEPVTVSWNSGALTSGVHT-FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  219 (257)
T ss_dssp             EEEBSSCCEEEETTTTCCSSCEE-CCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred             eeEECCCcEEEEeeCCCcCCcEe-cCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence            986 5555899998764311110 001111111    2356777777677 9999999996543

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.45  E-value=7e-14  Score=102.89  Aligned_cols=164  Identities=15%  Similarity=0.153  Sum_probs=79.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEEe--CCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSS--GSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|.+.+.+.+ .+.|++...+....           ....++..  ......|.|.++..+|+|.|.|.
T Consensus        33 ~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  111 (233)
T 3bqu_C           33 LSMSIGEKVTIRCITSTDIDD-DMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCL  111 (233)
T ss_dssp             C-------CCEEEEEEEEESS-CEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEE
T ss_pred             EEEecCCCEEEEEecCCcCCC-eEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEE
Confidence            457799999999999987766 79999864322110           00112221  22344799999999999999999


Q ss_pred             EEcCCceEEeeEEEEEEeCCCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCCe-EEEEEEEeCCcccee-EE---E
Q psy11549        136 AQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLL-VN---L  205 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~-~~---~  205 (261)
                      +.+..+..... ...+.+...+.+|. +.+..     ..|+.++|.|.+  .+..|. ..+.|+++....... ..   .
T Consensus       112 ~~~~~~~~~~~-~~~l~V~~~~~~p~-v~~~~~~~~~~~g~~v~L~C~~--~g~~p~~~~v~W~k~g~~~~~~~~~~~~~  187 (233)
T 3bqu_C          112 QSDNLPYTFGG-GTNLEIKRADAAPT-VSIFPPSSEQLTSGGASVVCFL--NNFYPKDINVKWKIDGSERQNGVLNSWTD  187 (233)
T ss_dssp             ECSSSSCCBCC-CCBC---CCCBCCE-EEEECCCHHHHHTTEEEEEEEE--EEEBSSCEEEEEEEC-----CCEEEEECC
T ss_pred             EecCCceeecC-CEEEEEeCCCCCCE-EEEeCCCHHhhcCCceEEEEEE--ccccCCceEEEEEECCeeCCCCceEecCC
Confidence            99865432111 11233333322332 12211     248899999997  343443 223444443222111 10   1


Q ss_pred             ecCCC------CcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        206 TNLDT------PAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       206 ~~~~~------~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      .....      ..+.|..+..+|+|.|  +|.|.|.....
T Consensus       188 ~~~~~~~~~~~s~L~i~~~~~~d~g~Y--~C~a~n~~~~~  225 (233)
T 3bqu_C          188 QDSKDSTYSMSSTLTLTKDEYERHNSY--TCEATHKTSTS  225 (233)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHTCCCE--EEEEEEC---C
T ss_pred             ccCCCCCEEEEEEEEECHHHhCCCCCE--EEEEEeCCCCc
Confidence            11111      2466777556789999  99999986543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.45  E-value=6.5e-13  Score=97.42  Aligned_cols=167  Identities=15%  Similarity=0.148  Sum_probs=95.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-C--ceeEEEEcCCccccc---------------cCCceEEeC----CceeEEEEecCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-A--RSFKWKFNNSGETLD---------------VGSERFSSG----SRGSMLRYTPVTE  126 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~--~~~~W~~~~~~~~~~---------------~~~~~~~~~----~~~~~l~i~~~~~  126 (261)
                      +.+..|++++|.|.+.+.+. .  ..+.|++...+....               ....++...    .....|.|.++..
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   89 (228)
T 3bae_H           10 GLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDT   89 (228)
T ss_dssp             SEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCG
T ss_pred             eeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCc
Confidence            45779999999999998764 1  389999853221110               012233322    2346899999999


Q ss_pred             CcCeEEEEEEEcCCc------e---EEeeEEEEEEeCCCCCCCCcceE----EeecCCeEEEEeecCCCCCCCeE-EEEE
Q psy11549        127 LDYGTLSCAAQNAIG------T---QVTPCLYQVVLAGKPQPPQNCSV----RNETTSSVHISCTPGYDGGLPQT-FTLE  192 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~------~---~~~~~~~~v~~~~~p~~p~~~~v----~~~~~~~~~l~c~~~~~~~~p~~-~~~~  192 (261)
                      +|+|.|.|.+.+..|      .   ......+.|.. .++.+|.....    ....|+.++|.|.+  .+..|.. .+.|
T Consensus        90 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~-~~~~~P~i~~~~~~~~~~~g~~~~l~C~~--~g~~P~p~~v~W  166 (228)
T 3bae_H           90 ADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSS-AKTTAPSVYPLAPVCGDTTGSSVTLGCLV--KGYFPEPVTLTW  166 (228)
T ss_dssp             GGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECS-CCCBCCEEEEECC-----CCSEEEEEEEE--EEEBSSCCEEEE
T ss_pred             ccCEEEEEEEecCCCccccccceeeeCCcEEEEecC-CCCCCCEEEEecccccccCCCCEEEEEEE--ccEeCCCEEEEE
Confidence            999999999998654      1   11222343332 22333322111    12358999999997  3433432 2334


Q ss_pred             EEeCCccc-eeE-EEecC----CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCc
Q psy11549        193 LYSASDLN-LLV-NLTNL----DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP  241 (261)
Q Consensus       193 ~~~~~~~~-~~~-~~~~~----~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~  241 (261)
                      ++...... ... .....    ....+.|..+...+ |.|  +|.|.|..|....
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~Y--tC~~~n~~~~~~~  218 (228)
T 3bae_H          167 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESI--TCNVAHPASSTKV  218 (228)
T ss_dssp             GGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCC--EEEEEEGGGTEEE
T ss_pred             eeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcE--EEEEEECCCCCCE
Confidence            34332211 111 11111    12357777866655 999  9999999986543

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.45  E-value=4.5e-12  Score=93.19  Aligned_cols=173  Identities=18%  Similarity=0.200  Sum_probs=95.9

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc---------------cCCceEEe----CCceeEEEEecCCCCc
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD---------------VGSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~---------------~~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      +.+..|++++|.|.+.+.+ ....+.|++...+....               ....++..    ......|.|.++..+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (232)
T 1dn0_B           10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD   89 (232)
T ss_dssp             CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCccc
Confidence            4577999999999998764 22379999854221110               01223332    2335589999999999


Q ss_pred             CeEEEEEEEc--CCc----eEEeeEEEEEEeCC-CCCCCCcceEE----eecC-CeEEEEeecCCCCCCCeE-EEEEEE-
Q psy11549        129 YGTLSCAAQN--AIG----TQVTPCLYQVVLAG-KPQPPQNCSVR----NETT-SSVHISCTPGYDGGLPQT-FTLELY-  194 (261)
Q Consensus       129 ~g~y~C~~~~--~~~----~~~~~~~~~v~~~~-~p~~p~~~~v~----~~~~-~~~~l~c~~~~~~~~p~~-~~~~~~-  194 (261)
                      +|.|.|.+.+  ..+    .......  +.|.. ++.+|......    ...| ..++|.|.+  .+..|.. .+.|++ 
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~~~~--L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~--~g~~P~p~~v~W~~~  165 (232)
T 1dn0_B           90 TAVYYCARPPHDTSGHYWNYWGQGTL--VTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLA--QDFLPDSITFSWKYK  165 (232)
T ss_dssp             CEEEEEEECSSTTSCSCCSEECCCEE--EEECSSCCBCCEEEEEECC------CCSEEEEEEE--EEEBSSCCEEEEEET
T ss_pred             CEEEEEEEecCCcCCchhhhcccceE--EEEccCCCCCCceEEeccccccCCCCCcEEEEEEE--EEEeCCCeEEEEEcC
Confidence            9999999983  211    1112223  44433 33344322111    1246 899999997  3443432 333444 


Q ss_pred             eCCcccee--E-EEecC----CCCcEEEcCCCC--CCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        195 SASDLNLL--V-NLTNL----DTPAFTLEDLGL--DGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       195 ~~~~~~~~--~-~~~~~----~~~~~~i~~~~l--~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      +.......  . .....    ....+.|.....  .+.+.|  +|.|.|..|.......+.+
T Consensus       166 ~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y--tC~v~n~~~~~~~~~~i~~  225 (232)
T 1dn0_B          166 NNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHV--VCKVQHPNGNKEKNVPLPV  225 (232)
T ss_dssp             TSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEE--EEEEECTTCCEEEEEECCC
T ss_pred             CCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeE--EEEEEeCCCCcceeEecCC
Confidence            32211100  0 00000    113567777554  568999  9999999987655544443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.44  E-value=1.1e-13  Score=104.10  Aligned_cols=120  Identities=18%  Similarity=0.168  Sum_probs=75.3

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC---cceeeeEEEEEEe------eceeecCceeEEEeeCCCcEEEEEEEee-CCCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG---EATSNQLKLRVKY------APICKSDRIVIVGASRSESVDIHCAVEA-DPPA   89 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~---~~~s~~~~l~V~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~   89 (261)
                      .+|.|.+++.+|+|.|+|.+.+...   ......+.|.|..      +|.+.........+..|+.++|.|.+.+ .|.+
T Consensus       101 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  180 (270)
T 3qib_D          101 CSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  180 (270)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCC
Confidence            4899999999999999999986432   1223345777765      3332211111012335899999999998 4445


Q ss_pred             ceeEEEEcCCccccccCCceEE----------eCCc---eeEEEEecCCCCc-CeEEEEEEEcCCce
Q psy11549         90 RSFKWKFNNSGETLDVGSERFS----------SGSR---GSMLRYTPVTELD-YGTLSCAAQNAIGT  142 (261)
Q Consensus        90 ~~~~W~~~~~~~~~~~~~~~~~----------~~~~---~~~l~i~~~~~~d-~g~y~C~~~~~~~~  142 (261)
                      ..+.|++++..  +.... ...          ..+.   .+.|.|.....+| .|.|+|.+.+....
T Consensus       181 ~~v~W~k~g~~--l~~~~-~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~  244 (270)
T 3qib_D          181 VELSWWVNGKE--VHSGV-CTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  244 (270)
T ss_dssp             EEEEEEETTEE--ECTTE-EECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred             eEEEEEECCEE--CCCCc-ccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCC
Confidence            58999997642  21110 000          0111   2356777776666 99999999986543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.44  E-value=4.3e-12  Score=92.53  Aligned_cols=165  Identities=16%  Similarity=0.178  Sum_probs=94.9

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc------------------cCCceEEe----CCceeEEEEecCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD------------------VGSERFSS----GSRGSMLRYTPVT  125 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~------------------~~~~~~~~----~~~~~~l~i~~~~  125 (261)
                      +.+.+|++++|.|.+.+.+ ....+.|++...+....                  ....++..    ......|.|.++.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   89 (221)
T 3m8o_H           10 GLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLK   89 (221)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCC
T ss_pred             EEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCC
Confidence            5578999999999998753 22389999754321110                  01123322    1334579999999


Q ss_pred             CCcCeEEEEEEEcCC--ceEEeeEEEEEEeCCCCCCCCcceEEe---ecCCeEEEEeecCCCCCCCe---EEEEEEEeCC
Q psy11549        126 ELDYGTLSCAAQNAI--GTQVTPCLYQVVLAGKPQPPQNCSVRN---ETTSSVHISCTPGYDGGLPQ---TFTLELYSAS  197 (261)
Q Consensus       126 ~~d~g~y~C~~~~~~--~~~~~~~~~~v~~~~~p~~p~~~~v~~---~~~~~~~l~c~~~~~~~~p~---~~~~~~~~~~  197 (261)
                      .+|+|.|.|.+.+..  ........+.|.. .++.+|....+..   ..|..++|.|.+  .+..|.   .+.| +++..
T Consensus        90 ~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~-~~~~~p~v~~~~~~~~~~g~~v~L~C~~--~~~~P~~~~~v~W-~~~g~  165 (221)
T 3m8o_H           90 SDDTAMYYCVIRGDVYNRQWGQGTLVTVSS-ASPTSPKVFPLSLCSTQPDGNVVIACLV--QGFFPQEPLSVTW-SESGQ  165 (221)
T ss_dssp             GGGCEEEEEEEESCTTCCCBBCCEEEEECS-CCCBCCEEEEEECCSCCCTTEEEEEEEE--EEEBSSCSEEEEE-SCCST
T ss_pred             HHHCEEEEEEEECCChhheECCCEEEEEec-CCCCCCeEEEecCcccccCCCEEEEEEE--EeeECCCCEEEEE-EECCE
Confidence            999999999999863  1122222333331 2333333221111   358999999997  333443   3443 34332


Q ss_pred             ccceeE--EEe-cCC-----CCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        198 DLNLLV--NLT-NLD-----TPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       198 ~~~~~~--~~~-~~~-----~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      ......  ... ...     ...+.|......++|.|  +|.|.|..|..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~y--tC~v~~~~~~~  213 (221)
T 3m8o_H          166 GVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSV--TCHVKHYTNPS  213 (221)
T ss_dssp             TCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEE--EEEEEETTSCC
T ss_pred             ECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeE--EEEEEECCCCc
Confidence            221110  001 111     12477887667789999  99999988653

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.44  E-value=6.6e-13  Score=103.48  Aligned_cols=165  Identities=11%  Similarity=0.138  Sum_probs=96.7

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----------------cCCceEEeC----CceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----------------VGSERFSSG----SRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----------------~~~~~~~~~----~~~~~l~i~~~~~~  127 (261)
                      +.+..|+.+.|.|.+.+.+ +...+.|+++..+....                ....++...    .....|.|.++..+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (344)
T 1za6_B           10 EVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSE   89 (344)
T ss_dssp             EEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCcc
Confidence            5678999999999998864 23379999874222110                012233322    34568999999999


Q ss_pred             cCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceE----EeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccce-
Q psy11549        128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSV----RNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNL-  201 (261)
Q Consensus       128 d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v----~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~-  201 (261)
                      |+|.|+|.+.+..+.......+.|.. .++.+|.....    ....|+.++|.|.+  .+..|. ..+.|+++...... 
T Consensus        90 D~G~Y~C~~~n~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~--~g~~P~~~~v~W~k~g~~~~~~  166 (344)
T 1za6_B           90 DTAVYFCTRSLNMAYWGQGTLVTVSS-ASTKGPSVFPLAPSSKSTSGGTAALGCLV--KDYFPEPVTVSWNSGALTSGVH  166 (344)
T ss_dssp             GCEEEEEEETTTTCEECCCEEEEECS-SCCBCCEEEEECCSCTTTSSSEEEEEEEE--EEEBSSCCCEEETTTTBCTTEE
T ss_pred             cCEEEEEEEecCcceecCcEEEEEec-CCCCCCeEEEccccccccCCCcEEEEEEE--eeEECCCeEEEEecCCccCcee
Confidence            99999999998654443333443332 22333321111    11468999999997  444343 22333333322110 


Q ss_pred             eE-EEecCC-----CCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        202 LV-NLTNLD-----TPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       202 ~~-~~~~~~-----~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      .. ......     ...|.|..+..++ |.|  +|.|.|..|..
T Consensus       167 ~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y--~C~a~n~~~~~  207 (344)
T 1za6_B          167 TFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY--ICNVNHKPSNT  207 (344)
T ss_dssp             ECCCEECTTSCEEEEEEEEEETTHHHH-BCE--EEEEEEGGGTE
T ss_pred             ECCCeECCCCCEEEEEEEEEcHHHcCC-CcE--EEEEEeCCCCc
Confidence            01 111111     1257788855556 999  99999998853

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.44  E-value=1.4e-12  Score=83.15  Aligned_cols=82  Identities=17%  Similarity=0.250  Sum_probs=60.6

Q ss_pred             eCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCce-EEe-----CCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         72 SRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER-FSS-----GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~-----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+..+.|.|.+.+.|.| .+.|++++..  +...... ...     ......|.|.++..+|+|.|+|.|.|..|....
T Consensus        14 ~~~~~~~~~c~v~G~P~P-~i~W~k~g~~--l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   90 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKP-ALQWFYNGAI--LNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK   90 (103)
T ss_dssp             CCCCEEEEEEEEECSSCC-EEEEEETTEE--ECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEE
T ss_pred             eECcEEEEEEEEEEeCCC-EEEEEECCEE--CCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeE
Confidence            367889999999999999 8999998742  2222211 111     112345999999999999999999999998777


Q ss_pred             eEEEEEEeCCCCC
Q psy11549        146 PCLYQVVLAGKPQ  158 (261)
Q Consensus       146 ~~~~~v~~~~~p~  158 (261)
                        .+.+.+..+|.
T Consensus        91 --~~~l~V~~~P~  101 (103)
T 1wwb_X           91 --QISAHFMGWPG  101 (103)
T ss_dssp             --EEEECCSCCCC
T ss_pred             --EEEEEECCCCC
Confidence              55666666664

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.43  E-value=3.3e-12  Score=83.50  Aligned_cols=90  Identities=11%  Similarity=0.086  Sum_probs=62.0

Q ss_pred             EEeeCCCcEEEEEEEeeC---CCCceeEEEEcCCccccc-cCCceEEeCC--------ceeEEEEecCCCCcCeEEEEEE
Q psy11549         69 VGASRSESVDIHCAVEAD---PPARSFKWKFNNSGETLD-VGSERFSSGS--------RGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~---~~~~~~~W~~~~~~~~~~-~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      +.+.+|+.++|.|.+.+.   |.| .+.|+++.. .... ....++....        ....|.|.++...|+|.|+|+|
T Consensus        17 v~V~eG~~v~L~C~v~g~~~~p~P-~V~W~Kgk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cev   94 (126)
T 2dav_A           17 GTVKVGEDITFIAKVKAEDLLRKP-TIKWFKGKW-MDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEV   94 (126)
T ss_dssp             CEEETTCCEEEEEEEECCCSSSCC-EEEEEESSS-CCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEE
T ss_pred             eEEeCCCCEEEEEEEeccCCCCCC-cEEEeeCcC-cccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEE
Confidence            678899999999999875   556 899999641 1111 0122222210        2468999999999999999999


Q ss_pred             EcCCceEEeeEEEEEEeCCCCCCCC
Q psy11549        137 QNAIGTQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus       137 ~~~~~~~~~~~~~~v~~~~~p~~p~  161 (261)
                      .|..+.......|+|.+. +|..|.
T Consensus        95 sn~~g~~~~~~~L~V~~~-~~~~p~  118 (126)
T 2dav_A           95 TYKDKFDSCSFDLEVHES-TGTTPN  118 (126)
T ss_dssp             ECSSCEEEECCEEEEECC-CCSCCC
T ss_pred             EeCCCcEEEEEEEEEEec-CCCCCe
Confidence            999887777555555541 444443

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.43  E-value=1.3e-13  Score=106.55  Aligned_cols=118  Identities=15%  Similarity=0.139  Sum_probs=76.6

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE------eeceeecCceeEEEeeCCCcEEEEEEEeeCCC-Cce
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK------YAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARS   91 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~   91 (261)
                      .++|.|.+++.+|+|.|+|.|.|..+.. .  +.+.|.      .+|.+...... .....|+.++|.|.+.+.++ +..
T Consensus       177 ~~~L~I~~~~~~D~G~Y~C~a~n~~~~~-~--~~~~v~~~~~~~~~P~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~  252 (323)
T 2wqr_A          177 TSTLPVGTRDWIEGETYQCRVTHPHLPR-A--LMRSTTKTSGPRAAPEVYAFATP-EWPGSRDKRTLACLIQNFMPEDIS  252 (323)
T ss_dssp             EEEEECCHHHHHTTCCEEEEEECTTSSS-C--EEEEECCCCSCCBCCEEEEEECC-CCTTCTTEEEEEEEEEEEBSSCCE
T ss_pred             EEEEEECHHHccCCCCEEEEEECCCCCC-C--eeeEEEccCCCCCCCEEEEeCCC-hHHhcCCcEEEEEEeeeeeCCCcE
Confidence            3479999999999999999999886432 1  233332      34443321111 11123999999999998544 448


Q ss_pred             eEEEEcCCccccccCCce----EEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         92 FKWKFNNSGETLDVGSER----FSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        92 ~~W~~~~~~~~~~~~~~~----~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      +.|++++..  +......    ....+    ..+.|.|..+..+|.|.|+|.|.|....
T Consensus       253 v~W~k~g~~--l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          253 VQWLHNEVQ--LPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEEEETTEE--CCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EEEEECCEE--CCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            999998742  2111111    00111    1346899999999999999999998654

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.43  E-value=2e-13  Score=114.01  Aligned_cols=230  Identities=13%  Similarity=0.131  Sum_probs=129.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeC-CCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINT-KGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDI   79 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~-~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l   79 (261)
                      ++||+.|..+..+.......+|+|.++...|+| |+|.+... ........+.|.|..+|.              ....|
T Consensus        45 ~~~~~~i~~~~~~~~~~~~~~l~i~~~~~~~~~-y~C~~~~~~~~~~~~~~~~l~v~~pP~--------------~P~nl  109 (589)
T 3l5h_A           45 KTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ-LTCNILTFGQLEQNVYGITIISGLPPE--------------KPKNL  109 (589)
T ss_dssp             BCSSSBSCGGGCBCCSSSCCBCCCCCCCSSCCC-CCCC-CCTTCC-CCCCCCCCCC-CCCC--------------CCEEE
T ss_pred             EeCCEECChHHccccCCcEeEEEEecCCCccee-eEEecccCCCcccEEEeEEEeccCCCC--------------CCEee
Confidence            367777754332222122458999999998876 66877532 111112334455544442              22344


Q ss_pred             EEEEeeCCCCceeEEEEcCCcccc---cc-------CCceEE-eCCceeEEEEe-cCCCCcCeEEEEEEEcCCceEEe-e
Q psy11549         80 HCAVEADPPARSFKWKFNNSGETL---DV-------GSERFS-SGSRGSMLRYT-PVTELDYGTLSCAAQNAIGTQVT-P  146 (261)
Q Consensus        80 ~C~~~~~~~~~~~~W~~~~~~~~~---~~-------~~~~~~-~~~~~~~l~i~-~~~~~d~g~y~C~~~~~~~~~~~-~  146 (261)
                      .|........ .+.|.........   .+       ...... .........+. .+.....+.|+|.|.|..|.... .
T Consensus       110 ~c~~~~~~~~-~~~W~~~~~~~~~~~y~l~~~~~~~~~~~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s~~  188 (589)
T 3l5h_A          110 SCIVNEGKKM-RCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDH  188 (589)
T ss_dssp             EEEEETTSCE-EEEEECCSCCSSCEEEEECCBCSSSBCCCEECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCCCC
T ss_pred             EEEECCCceE-EEEECCCCcCCcCceEEEEEEEcCCCcccCCCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCccccc
Confidence            4544433222 4445432111000   00       000011 11111233344 45566678899999999887532 2


Q ss_pred             EEEEEEeCCCCCCCCcceEE--eecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeEEEe-----cCCCCcEEEcCC
Q psy11549        147 CLYQVVLAGKPQPPQNCSVR--NETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLT-----NLDTPAFTLEDL  218 (261)
Q Consensus       147 ~~~~v~~~~~p~~p~~~~v~--~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~  218 (261)
                      ..+.+....+|.+|.++.+.  ......+.|+|.++...+.+ ..|.+.|+..+..  .|...     ......+.|.+ 
T Consensus       189 ~~~~~~~~~~p~pP~~~~~~~~~~~~~~v~l~W~~p~~~~~~~~~Y~v~~~~~~~~--~w~~~~~~~~~~~~~~~~i~~-  265 (589)
T 3l5h_A          189 INFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDAS--TWSQIPPEDTASTRSSFTVQD-  265 (589)
T ss_dssp             EEECGGGSEECCCCCSCEEECTTTCTTCEEEECCCCGGGGTSCEEEEEEEEETTCS--CCBCCCTTSSCSCCSEEEECS-
T ss_pred             EEEccccEEEcCCCceEEEEecCCCCCeEEEEeCCCCCCCeeeEEEEEEECCCCCC--CcEEEccccCcCceeEEEECC-
Confidence            22222233478899988884  35688999999975443334 5699999886644  23111     22347889999 


Q ss_pred             CCCCccEEEEEEEEEcCCCcCCce---eeeeeeec
Q psy11549        219 GLDGTVLMRVVISGVNAKGRSLPV---IWDDFSMS  250 (261)
Q Consensus       219 ~l~~~~~Y~~~~~a~N~~G~~~~s---~~~~~~~~  250 (261)
                       |.+++.|.|+|.|.|..|.+.+|   ..+.+.+.
T Consensus       266 -L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~  299 (589)
T 3l5h_A          266 -LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY  299 (589)
T ss_dssp             -CCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCC
T ss_pred             -CCCCCEEEEEEEEEeCCCCCccCCCCCccccccC
Confidence             99999999999999999987664   44444443

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=1e-12  Score=83.18  Aligned_cols=91  Identities=12%  Similarity=0.066  Sum_probs=62.4

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+...... ..+..|+.+.|.|.+  .|.+ .+.|++++.... ......+...+....|.|.++..+|+|.|+|.|.|
T Consensus         8 ~~~~~~~~~-~~v~~G~~v~l~C~v--~p~p-~v~W~k~g~~l~-~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            8 LKILTPLTD-QTVNLGKEICLKCEI--SENI-PGKWTKNGLPVQ-ESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             CCCSBCCCC-EEEETTSCCCEEEEC--SSCC-CEEEEETTEECC-CCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CEEeccCCc-eEEcCCCCEEEEEEe--CCCC-eEEEEECCEECC-CCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence            344444444 678899999999999  5666 799999874221 12223344455566899999999999999999999


Q ss_pred             CCceEEeeEEEEEEeCCCCC
Q psy11549        139 AIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus       139 ~~~~~~~~~~~~v~~~~~p~  158 (261)
                      .  ....  ...+.|..+|.
T Consensus        83 ~--~~~~--~a~L~V~~~P~   98 (100)
T 2yuz_A           83 Y--NVTL--PAKVHVISGPS   98 (100)
T ss_dssp             S--CCCE--EEEEEEECCSC
T ss_pred             C--CeeE--EEEEEEeCCCC
Confidence            7  2233  33444545553

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=1.5e-12  Score=82.55  Aligned_cols=89  Identities=17%  Similarity=0.250  Sum_probs=64.0

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +|.+...+.. ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +.....++..... ..|.|.++..+|+|.|+|.+.
T Consensus         8 ~P~i~~~p~~-~~v~~G~~~~l~C~~~g~p~p-~v~W~~~~~~--~~~~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~a~   82 (100)
T 2edj_A            8 PPIILQGPAN-QTLAVDGTALLKCKATGDPLP-VISWLKEGFT--FPGRDPRATIQEQ-GTLQIKNLRISDTGTYTCVAT   82 (100)
T ss_dssp             SCEEEECCCC-EEEESSSEEEECCEEECSSCC-EEEEEESSSE--ESSSCSSCEECTT-CCEEEESCCTTTCCEEEEEEE
T ss_pred             CCEEEeCcCC-EEEcCCCcEEEEEEEEEcCCC-EEEEEECCEE--CCCCCCCEEEcCC-CEEEEccCCcccCEEEEEEEE
Confidence            3444433333 567899999999999999888 7999998743  3222333333222 269999999999999999999


Q ss_pred             cCCceEEeeEEEEE
Q psy11549        138 NAIGTQVTPCLYQV  151 (261)
Q Consensus       138 ~~~~~~~~~~~~~v  151 (261)
                      |..|.......+.|
T Consensus        83 n~~g~~~~~~~l~V   96 (100)
T 2edj_A           83 SSSGETSWSAVLDV   96 (100)
T ss_dssp             CSSCCCBCCEEEEE
T ss_pred             cCCCCEEEEEEEEE
Confidence            99887766444444

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.42  E-value=1e-12  Score=96.50  Aligned_cols=121  Identities=13%  Similarity=0.126  Sum_probs=75.3

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC-----Cc--ceeeeEEEEEE----eeceeecCceeEEEeeCCCcEEEEEEEeeCCC-
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK-----GE--ATSNQLKLRVK----YAPICKSDRIVIVGASRSESVDIHCAVEADPP-   88 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~-----~~--~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-   88 (261)
                      +|.|.+++.+|+|.|.|.+.+..     +.  .......|.|.    .+|.+...... ..+..|+.++|.|.+.+.++ 
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~L~C~~~~~~P~  158 (230)
T 3n9g_H           80 YMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFPE  158 (230)
T ss_dssp             EEEECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCC-CCCCTTCEEEEEEEEEEEBSS
T ss_pred             EEEECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCC-ccccCCCCEEEEEEEEeEECC
Confidence            49999999999999999998754     11  11234567775    23333311111 22458999999999998544 


Q ss_pred             CceeEEEEcCCccccccCCc-eEEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         89 ARSFKWKFNNSGETLDVGSE-RFSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        89 ~~~~~W~~~~~~~~~~~~~~-~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +..+.|  ++.......... .....+    ..+.|.|.....+| |.|+|.+.+..+....
T Consensus       159 ~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~  217 (230)
T 3n9g_H          159 PVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  217 (230)
T ss_dssp             CCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEE
T ss_pred             CEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcce
Confidence            557999  443211100000 001111    12468899998889 9999999997765444

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.42  E-value=5e-12  Score=81.28  Aligned_cols=81  Identities=12%  Similarity=0.044  Sum_probs=58.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCC---CceeEEEEcCCcccccc-CCceEEeC--------CceeEEEEecCCCCcCeEEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPP---ARSFKWKFNNSGETLDV-GSERFSSG--------SRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~-~~~~~~~~--------~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      +.+..|++++|.|.+.+.|.   | .+.|++++. ..... ...++...        .....|.|.++..+|+|.|+|.+
T Consensus        14 ~~v~~G~~v~L~C~~~g~p~~~~p-~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (108)
T 3cx2_A           14 GEVTVGGSITFSARVAGASLLKPP-VVKWFKGKW-VDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEV   91 (108)
T ss_dssp             EEEETTCCEEEEEEEECC-CCSCC-EEEEEETTT-EEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEeCCCCEEEEEEECCCccCCCc-EEEEccCCc-ccccccCCceEEEeeEEecccccceEEEEEecCCCccCEEEEEEE
Confidence            67889999999999999887   6 899999652 11111 11122211        12457999999999999999999


Q ss_pred             EcCCceEEeeEEEEE
Q psy11549        137 QNAIGTQVTPCLYQV  151 (261)
Q Consensus       137 ~~~~~~~~~~~~~~v  151 (261)
                      .|..|.......+.|
T Consensus        92 ~N~~G~~~~~~~L~V  106 (108)
T 3cx2_A           92 STKDKFDCSNFNLTV  106 (108)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             ecCCCceEEEEEEEE
Confidence            999998877555544

>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.42  E-value=6e-13  Score=84.86  Aligned_cols=96  Identities=17%  Similarity=0.051  Sum_probs=75.5

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      .+|.+|.++.+.. ..+.+.|+|.++.+++.++. |+++|+......... .........++|.+  |.++..|+|+|.|
T Consensus         6 ep~~pP~~l~v~~-~~~sv~L~W~pP~~~~~~I~gY~vey~~~~~~W~~~~~~~~~~~t~~~v~~--L~pg~~Y~FRV~A   82 (108)
T 1v5j_A            6 SGLSPPRGLVAVR-TPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPG--LIKDVLYEFRLVA   82 (108)
T ss_dssp             CCCCCCEEEEEEE-CSSSEEEEEECCSCCSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCC--CCTTSCEECCBEE
T ss_pred             CCCCCCcceEEEE-eCCEEEEEECCCCCCCCCCcEEEEEEEeCCCCcEEeeeecCCCcCEEEeCC--CCCCCEEEEEEEE
Confidence            5678888888865 46789999998877777766 999998843322111 12234568999999  9999999999999


Q ss_pred             EcCCCcCCceeeeeeeecccc
Q psy11549        233 VNAKGRSLPVIWDDFSMSGAH  253 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~~~~~  253 (261)
                      .|..|.|++|..+.+.+.+.+
T Consensus        83 ~n~~G~s~pS~~~~v~T~~~~  103 (108)
T 1v5j_A           83 FAGSFVSDPSNTANVSTSGLS  103 (108)
T ss_dssp             EETTEEEEECSCCCCCCSSCS
T ss_pred             EcCCCCcCCCCCEEEEeCCcc
Confidence            999999999999998876544

>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*

Probab=99.42  E-value=9.3e-13  Score=107.17  Aligned_cols=219  Identities=13%  Similarity=0.130  Sum_probs=132.8

Q ss_pred             CCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC---Cc--eeEEEEcCCcc-
Q psy11549         28 SRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP---AR--SFKWKFNNSGE-  101 (261)
Q Consensus        28 ~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~--~~~W~~~~~~~-  101 (261)
                      ...|.|.|.|.+.|..+...+.........+|...  ... ........+.|.+.......   ..  .+.|...+... 
T Consensus       303 ~s~~~Gs~~C~C~ng~~ra~~d~~~~~ct~pPsaP--~nl-~~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~  379 (536)
T 3fl7_A          303 LPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAP--HYL-TAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESG  379 (536)
T ss_dssp             ECCCTTCSSCEECTTCBCCTTCCTTSCCBCCCCCB--SCE-EEECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CC
T ss_pred             CCCCCCccEEEEeccccccCCCccccccccCCCcc--cce-EEEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCC
Confidence            45788999999999987653322222222233211  111 22345678888877543322   11  34444321100 


Q ss_pred             ccc--cCCceEE---eCCceeEEEEecCCCCcCeEEEEEEEcCCceEE-eeEEEEEEeCCCCCCCCcceEEeecCCeEEE
Q psy11549        102 TLD--VGSERFS---SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV-TPCLYQVVLAGKPQPPQNCSVRNETTSSVHI  175 (261)
Q Consensus       102 ~~~--~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l  175 (261)
                      ...  .....+.   .......+.|.++.+...+.|++.|.|..|... ......+.+..+|.+|..+.+.......+.|
T Consensus       380 ~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T~~~~Ps~~~~~~~s~tSV~L  459 (536)
T 3fl7_A          380 ECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSV  459 (536)
T ss_dssp             CEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEECCSCCCCEEEEEECCC-CCEE
T ss_pred             cccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEeecccCCCCCceeeccCCeEEE
Confidence            000  0011111   112344789999999999999999999887621 1112234444566667766666678999999


Q ss_pred             EeecCCCCCCC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeeccc
Q psy11549        176 SCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       176 ~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~  252 (261)
                      +|.++...+.+ ..|.+.|+..... ..+.........++|.+  |.+++.|.|+|.|.|..|.+.+|..+.+++...
T Consensus       460 sW~pP~~~ng~I~~Y~V~y~~~~~~-~~~~~v~~~~ts~~l~g--L~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T~~~  534 (536)
T 3fl7_A          460 SWSIPPPQQSRVWKYEVTYRKKGDS-NSYNVRRTEGFSVTLDD--LAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSP  534 (536)
T ss_dssp             EEECCTTTTTTCSEEEEEEEEC--C-CCCEEEEESSSEEECCS--CCSSCEEEEEEEEECC---CEECCCEEEECCC-
T ss_pred             EEECCcCCCCcccEEEEEEEECCCC-ceEEEEcCCCCEEEECC--CCCCCEEEEEEEEEcCCcccCCCCCEEEEeCCC
Confidence            99986555555 4599998876554 22333344568999999  999999999999999999999999998887543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.41  E-value=1.1e-13  Score=101.71  Aligned_cols=118  Identities=11%  Similarity=0.073  Sum_probs=72.7

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE------eeceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK------YAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFK   93 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~------~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~   93 (261)
                      +|.|.+++.+|+|.|+|.+.+..+..   .+.+.|.      .+|.+......... ..+..++|.|.+.+.++ ...+.
T Consensus        78 ~L~I~~~~~~D~g~Y~C~~~~~~~~~---~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~  153 (231)
T 2w59_A           78 AVPVSTQDWLSGERFTCTVQHEELPL---PLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIR  153 (231)
T ss_dssp             EEECCHHHHHTTCCEEEEEECTTCSS---CEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEecchhccCCCEEEEEEEcCCCCC---ceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEE
Confidence            69999999999999999999887543   2334443      23433211100001 13557999999998644 34899


Q ss_pred             EEEcCCccccccC-CceEEeC---------C-c----eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         94 WKFNNSGETLDVG-SERFSSG---------S-R----GSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        94 W~~~~~~~~~~~~-~~~~~~~---------~-~----~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      |++++........ .......         + .    .+.|.|.....+|.|.|+|.|.|....
T Consensus       154 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~  217 (231)
T 2w59_A          154 WLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP  217 (231)
T ss_dssp             EEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred             EEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence            9998743211100 0000111         1 1    245777777777899999999997543

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.41  E-value=4.4e-10  Score=81.84  Aligned_cols=200  Identities=13%  Similarity=0.164  Sum_probs=111.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcce-eeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEE--eeCCC-----Cce
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEAT-SNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAV--EADPP-----ARS   91 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~-s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~--~~~~~-----~~~   91 (261)
                      +.|.|..++..|+|.|+|.+.+..|... +..+.|.+...+.+....+..+.+..|..+.|.+.+  .+..+     ..+
T Consensus        52 ~tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yT  131 (304)
T 3shs_A           52 ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELH  131 (304)
T ss_dssp             SEEEESSCCGGGCEEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCE
T ss_pred             ceEEeeeccccCCeEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCce
Confidence            4899999999999999999999877652 223333322222222111112345678899999887  43322     348


Q ss_pred             eEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCC-cceEEeecC
Q psy11549         92 FKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ-NCSVRNETT  170 (261)
Q Consensus        92 ~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~-~~~v~~~~~  170 (261)
                      ++|++++.  .+  ..        ...|++......++|.|+|.+.+..+....+....+.+..-+-+.. ...-....|
T Consensus       132 YQWyKngt--~I--sg--------Aq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~  199 (304)
T 3shs_A          132 YSWSKGED--VI--DT--------TQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALG  199 (304)
T ss_dssp             EEEEETTE--EE--ES--------SSEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETT
T ss_pred             eEEeeCCe--Ec--cC--------ccccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcC
Confidence            99999873  11  11        1257788888899999999999986643332233333322111111 111223457


Q ss_pred             CeEEEEeec-----CCCCCCCe---EEEEEEEeCCccceeE----------EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        171 SSVHISCTP-----GYDGGLPQ---TFTLELYSASDLNLLV----------NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       171 ~~~~l~c~~-----~~~~~~p~---~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      +.+.|..-+     +...+.|.   .|.|+.+..+......          -.....+.++.-......+..+  |+|.|
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  277 (304)
T 3shs_A          200 NEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAK--FWCVA  277 (304)
T ss_dssp             SCEEECCEEEEECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEE--EEEEE
T ss_pred             cEEEEEEEEeeccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCcceeecccccccchh--eeeHH
Confidence            777766533     34456662   3666665533221111          0112234555555544444444  48887


Q ss_pred             E
Q psy11549        233 V  233 (261)
Q Consensus       233 ~  233 (261)
                      .
T Consensus       278 ~  278 (304)
T 3shs_A          278 K  278 (304)
T ss_dssp             E
T ss_pred             H
Confidence            4

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.41  E-value=9.2e-12  Score=78.37  Aligned_cols=81  Identities=19%  Similarity=0.262  Sum_probs=60.8

Q ss_pred             EEeeCCCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         69 VGASRSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      +.+..|+.+.|.|.+.+. |.+ .+.|++++.... ......+........|.|.++..+|+|.|+|.+.|..|......
T Consensus        11 ~~v~~G~~v~l~C~~~g~~p~~-~v~W~~~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   88 (97)
T 2bk8_A           11 AVGEEGGHVKYVCKIENYDQST-QVTWYFGVRQLE-NSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYA   88 (97)
T ss_dssp             EEECTTCCEEEEEEEESCCTTC-EEEEEETTEECC-SSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             EEEcCCCcEEEEEEEeccCCCC-EEEEEECCEECc-CCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEE
Confidence            678899999999999997 666 899999874211 11122222344556899999999999999999999999877744


Q ss_pred             EEEE
Q psy11549        148 LYQV  151 (261)
Q Consensus       148 ~~~v  151 (261)
                      .+.|
T Consensus        89 ~l~V   92 (97)
T 2bk8_A           89 ELFV   92 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4433

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.39  E-value=7.5e-12  Score=81.74  Aligned_cols=82  Identities=23%  Similarity=0.306  Sum_probs=61.7

Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCce-EEe-C------CceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER-FSS-G------SRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~-~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      .+..+.|.|.+.|.|.| ++.|++++.  .+...... ... .      .....|.|.++...|+|.|+|.|.|..|...
T Consensus        14 ~~~~~~l~c~v~G~P~P-~I~W~knG~--~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~   90 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAP-SLRWLFNGS--VLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS   90 (126)
T ss_dssp             CCCEEEEEEEECCSSCC-EEEEEETTE--ECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCccEEEEEEEeeeCCC-eEEEEECCE--ECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEE
Confidence            67789999999999999 899999884  23222221 111 1      1235799999999999999999999999877


Q ss_pred             eeEEEEEEeCCCCCC
Q psy11549        145 TPCLYQVVLAGKPQP  159 (261)
Q Consensus       145 ~~~~~~v~~~~~p~~  159 (261)
                      .  .+.+.+...|.+
T Consensus        91 ~--t~~l~v~~~P~~  103 (126)
T 1he7_A           91 A--SIMAAFMDNPFE  103 (126)
T ss_dssp             E--EEEECCCSCTTS
T ss_pred             E--EEEEEEEcCCCC
Confidence            6  566667677764

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.39  E-value=1.5e-12  Score=98.53  Aligned_cols=119  Identities=17%  Similarity=0.176  Sum_probs=73.3

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC----c-ceeeeEEEEEEe------eceeecCceeEEEeeCCCcEEEEEEEeeCCC-
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG----E-ATSNQLKLRVKY------APICKSDRIVIVGASRSESVDIHCAVEADPP-   88 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~----~-~~s~~~~l~V~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-   88 (261)
                      +|.|.+++.+|+|.|+|.+.+..+    . .....+.|.|..      +|.+.........+..|+.++|.|.+.+.++ 
T Consensus       101 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~  180 (279)
T 2wbj_D          101 TLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD  180 (279)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSS
T ss_pred             EEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCC
Confidence            899999999999999999998432    1 112335677764      2332211000011236899999999998754 


Q ss_pred             CceeEEEEcCCccccccCCceEE---------eCCc----eeEEEEecCCCC-cCeEEEEEEEcCCce
Q psy11549         89 ARSFKWKFNNSGETLDVGSERFS---------SGSR----GSMLRYTPVTEL-DYGTLSCAAQNAIGT  142 (261)
Q Consensus        89 ~~~~~W~~~~~~~~~~~~~~~~~---------~~~~----~~~l~i~~~~~~-d~g~y~C~~~~~~~~  142 (261)
                      +..+.|++++..  +.... ...         ..+.    .+.|.|...... +.|.|+|.|.|....
T Consensus       181 ~~~v~W~k~g~~--l~~~~-~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~  245 (279)
T 2wbj_D          181 HVELSWWVNGKE--VHSGV-STDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  245 (279)
T ss_dssp             CEEEEEEETTEE--CCTTE-EECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred             CcEEEEEECCEE--CCCCc-ccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence            358999998742  21110 100         0111    224777776665 467899999997543

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.39  E-value=1.2e-12  Score=96.66  Aligned_cols=122  Identities=13%  Similarity=0.125  Sum_probs=74.6

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC-----------c-ceeeeEEEEEE----eeceeecCceeEEEeeCCCcEEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG-----------E-ATSNQLKLRVK----YAPICKSDRIVIVGASRSESVDIHCAVE   84 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~-----------~-~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~~~~l~C~~~   84 (261)
                      +|.|.+++.+|+|.|.|.+.+..+           . .......|.|.    .+|.+...... ..+..|+.++|.|.+.
T Consensus        87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g~~v~l~C~~~  165 (239)
T 3tv3_H           87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVK  165 (239)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCC-CCC--TTEEEEEEEEE
T ss_pred             EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCC-hhhccCCcEEEEEEEe
Confidence            599999999999999999976532           0 11223456664    23333311111 2244699999999999


Q ss_pred             eCCC-CceeEEEEcCCccccccCCceEEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         85 ADPP-ARSFKWKFNNSGETLDVGSERFSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        85 ~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      +.++ +..+.|++++........ ......+    ..+.|.|.....+| |.|+|.+.+..+....
T Consensus       166 ~~~p~~~~v~W~~~g~~~~~~~~-~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~  229 (239)
T 3tv3_H          166 DYFPEPVTVSWNSGALTSGVHTF-PAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  229 (239)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEEC-CCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEE
T ss_pred             eEeCCCeEEEEEECCccCceEec-CceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceE
Confidence            8544 556899887642111110 0011111    12368888888888 9999999997755444

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.38  E-value=4.9e-14  Score=92.93  Aligned_cols=102  Identities=23%  Similarity=0.409  Sum_probs=74.6

Q ss_pred             eeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEEe----CCc--eeEEE
Q psy11549         48 SNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSS----GSR--GSMLR  120 (261)
Q Consensus        48 s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~----~~~--~~~l~  120 (261)
                      +..+.|.|..+|.+.. ... ..+..|+.+.|.|.+.+.|.|..+.|++++..  +.. ...++..    ...  .+.|.
T Consensus         4 ~~~~~l~V~~~P~i~~-~~~-~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~L~   79 (122)
T 2cry_A            4 GSSGTLTVNGPPIISS-TQT-QHALHGEKGQIKCFIRSTPPPDRIAWSWKENV--LESGTSGRYTVETISTEEGVISTLT   79 (122)
T ss_dssp             SCCCCCCCCSSCCEEE-ECC-CCCCTTSCCCCCEEECCSSCCSEEEEESSSCE--ECSEEETTEEEEEEEETTEEEEEEE
T ss_pred             ceEEEEEEecCCCccC-CCe-EEEecCCCEEEEEEEeecCCCcEeEEEECCEE--ccCCCCCCEEEEEecCCCceEEEEE
Confidence            4456788888888776 333 67889999999999999998845999998742  221 1223322    122  55899


Q ss_pred             EecCCCCcC-eEEEEEEEcCCceEEeeEEEEEEeCC
Q psy11549        121 YTPVTELDY-GTLSCAAQNAIGTQVTPCLYQVVLAG  155 (261)
Q Consensus       121 i~~~~~~d~-g~y~C~~~~~~~~~~~~~~~~v~~~~  155 (261)
                      |.++..+|. |.|+|.|.|..|....  .+.+.+..
T Consensus        80 I~~v~~~D~~G~Y~C~a~N~~G~~~~--~~~l~V~~  113 (122)
T 2cry_A           80 ISNIVRADFQTIYNCTAWNSFGSDTE--IIRLKEQG  113 (122)
T ss_dssp             CTTCCHHHHHSCEEEEEECSSCEEEE--EECCCCSC
T ss_pred             EcCCChhhCCceEEEEEECCCCeEEE--EEEEEECC
Confidence            999999999 9999999999998776  44455543

>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A

Probab=99.38  E-value=2.2e-11  Score=88.01  Aligned_cols=134  Identities=15%  Similarity=0.108  Sum_probs=98.9

Q ss_pred             eEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeC--CCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEE
Q psy11549        117 SMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLA--GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLEL  193 (261)
Q Consensus       117 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~--~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~  193 (261)
                      ..+.+.++.....+.|++.|.|..|....+..+.+.-.  .+|.+|..+.+.......+.|+|.++.+.+.+ ..|.+.|
T Consensus        68 ~~~~i~~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~T~~~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~  147 (209)
T 2vkw_A           68 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRY  147 (209)
T ss_dssp             SEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECCCSCSCCCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEE
T ss_pred             ceEEeCCCCCCCeEEEEEEEEcCCcccCCcccccccccCCCCCCCCcccccccccCCeEEEEEECcccCCCCCceEEEEE
Confidence            36889999999999999999998876544333333322  25778887777777889999999986555555 4599998


Q ss_pred             EeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeeccc
Q psy11549        194 YSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~  252 (261)
                      +..................++|.+  |.+++.|.|+|.|.|..|.|++|.+........
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~~~~  204 (209)
T 2vkw_A          148 RALSSEWKPEIRLPSGSDHVMLKS--LDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAH  204 (209)
T ss_dssp             EETTSCCCCCEEECTTCCEEEECS--CCTTCEEEEEEEEEETTEECCCEEEEEECC---
T ss_pred             ECCCCCCceeeecCCCccEEEecC--CCCCCEEEEEEEEEeCCccCCcchhhhhhhhhh
Confidence            873322211233334557899999  999999999999999999999999998876543

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=5.5e-12  Score=82.48  Aligned_cols=91  Identities=13%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +|.+...... ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +.....++.... ...|.|.++..+|+|.|+|.|.
T Consensus         8 pP~i~~~p~~-~~v~~G~~v~l~C~~~g~p~p-~i~W~k~g~~--~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            8 PPVIRQGPVN-QTVAVDGTFVLSCVATGSPVP-TILWRKDGVL--VSTQDSRIKQLE-NGVLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             SCCCSBCCCC-EEEETTCEEEEECBCCCSSCC-EEEEEESSSB--CCTTSTTEEEEE-TTEEEEESCCGGGCCCEEEEEE
T ss_pred             CCEEEcCCCC-EEEcCCCeEEEEEEEEecCCC-EEEEEECCEE--CcCCCCeEEEcc-CCEEEEccCCcCCCEEEEEEEE
Confidence            4444444443 678899999999999998888 8999998743  222233333222 2269999999999999999999


Q ss_pred             cCCceEEeeEEEEEEe
Q psy11549        138 NAIGTQVTPCLYQVVL  153 (261)
Q Consensus       138 ~~~~~~~~~~~~~v~~  153 (261)
                      |..|.......+.|..
T Consensus        83 n~~g~~~~~~~l~V~~   98 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQE   98 (118)
T ss_dssp             CSSCEEEEECCEEEEC
T ss_pred             cCCCcEEEEEEEEEEe
Confidence            9999877655555543

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.38  E-value=9.1e-12  Score=103.80  Aligned_cols=166  Identities=17%  Similarity=0.183  Sum_probs=98.7

Q ss_pred             EEeeCCCcEEEEEEE-eeCCCCceeEEEEcCCccccc----c-----CCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         69 VGASRSESVDIHCAV-EADPPARSFKWKFNNSGETLD----V-----GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~----~-----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      ..+..|++++|.|.+ .+.|.+ .+.|++++......    .     ...+...... .+|.|.++..+|+|.|+|.+.+
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPPQ-RLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN-GSLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSSC-EEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT-SCEEESSCCGGGCEEEEEEEEC
T ss_pred             cceecCCcEEEeeeecCCCCCc-eEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC-ceEEEeccccccCeEEEEEEEc
Confidence            678899999999998 666666 89999976421110    0     0112222222 2699999999999999999999


Q ss_pred             CCceE-EeeEEEEEEeCCCCCCCCcc---eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc-----ceeE--EEec
Q psy11549        139 AIGTQ-VTPCLYQVVLAGKPQPPQNC---SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL-----NLLV--NLTN  207 (261)
Q Consensus       139 ~~~~~-~~~~~~~v~~~~~p~~p~~~---~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~-----~~~~--~~~~  207 (261)
                      ..+.. ..  .+.+.|..+|..|...   ......+..+.|.|.+  .++.|...+.|+++....     ....  ....
T Consensus       454 ~~~~~~~~--~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~--~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~  529 (581)
T 3o3u_N          454 RNGKETKS--NYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVS--EGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRR  529 (581)
T ss_dssp             TTSCEEEE--EEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEE--EEEBSCCEEEEEETTEECCTTSTTEEEEEEEEE
T ss_pred             CCCceeEE--EEEEEEEcCCCCCEEEcCCcccccCCceeEEEEEC--CCCCCCCeEEEEECCEECCCCCCeEEEEeeeEE
Confidence            88776 44  4445555555544311   1122334555679997  444454434445542211     1111  1111


Q ss_pred             C-C------CCcEEEcCCC-CCCccEEEEEEEEEcCCCcCCce
Q psy11549        208 L-D------TPAFTLEDLG-LDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       208 ~-~------~~~~~i~~~~-l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      . .      ...|.|..++ ..+.+.|  +|.|.|.++.....
T Consensus       530 ~~~~g~y~~~s~L~i~~~~~~d~~~~y--~C~~~n~~~~~~~~  570 (581)
T 3o3u_N          530 HPETGLFTLQSELMVTPARGGDPRPTF--SCSFSPGLPRHRAL  570 (581)
T ss_dssp             CTTTCCEEEEEEEEECCCTTSCSCCCE--EEEEECSSCSSCCE
T ss_pred             cCCCceEEEEEEEEEEeccccCCCceE--EEEEeccCCCCCcc
Confidence            0 1      1347777755 4457788  99999998755433

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.38  E-value=1.2e-11  Score=92.58  Aligned_cols=164  Identities=13%  Similarity=0.130  Sum_probs=93.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc----c------------CCceEEeC----CceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD----V------------GSERFSSG----SRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~----~------------~~~~~~~~----~~~~~l~i~~~~~~  127 (261)
                      +.+..|++++|.|.+.+.+. ...+.|++...+....    .            ...++...    .....|.|.++..+
T Consensus        16 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   95 (261)
T 2xqy_G           16 ELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTSE   95 (261)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCcc
Confidence            56789999999999987762 2379999864322110    0            01233322    23568999999999


Q ss_pred             cCeEEEEEEEcCCc-e--EEeeEEEEEEeCCCCCCCCcceEE----eecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcc
Q psy11549        128 DYGTLSCAAQNAIG-T--QVTPCLYQVVLAGKPQPPQNCSVR----NETTSSVHISCTPGYDGGLPQT-FTLELYSASDL  199 (261)
Q Consensus       128 d~g~y~C~~~~~~~-~--~~~~~~~~v~~~~~p~~p~~~~v~----~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~  199 (261)
                      |+|.|.|.+.+..+ .  ......+.|.. .++.+|......    ...++.++|.|.+  .+..|.. .+.|++.....
T Consensus        96 DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~-~~~~~P~v~~~~p~~~v~~g~~v~L~C~~--~g~~P~~i~v~W~k~g~~~  172 (261)
T 2xqy_G           96 DSAVYYCGRLGYVYGFDYWGQGTTLTVSS-AKTTAPSVYPLAPVCGDTTGSSVTLGCLV--KGYFPEPVTLTWNSGSLSS  172 (261)
T ss_dssp             GCEEEEEEEECTTSSEEEECCCEEEEECS-SCCBCCEEEEECCCCC--CCSEEEEEEEE--EEEBSSCCEEEEGGGTCCT
T ss_pred             cCeEEEEEEecCCCcceEECCCEEEEEcc-CCCCCCeEEEeCCCccccCCCcEEEEEEE--EeEeCCCCEEEEecCCCcC
Confidence            99999999998642 1  11222333332 122233211111    1348899999997  3333432 33344433221


Q ss_pred             cee-E-EEecC----CCCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        200 NLL-V-NLTNL----DTPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       200 ~~~-~-~~~~~----~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      ... . .....    ....|.|..+...+ +.|  +|.|.|....
T Consensus       173 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y--tC~v~n~~~~  214 (261)
T 2xqy_G          173 GVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSI--TCNVAHPASS  214 (261)
T ss_dssp             TEEECCCEEETTEEEEEEEEEEETTTTTT-SCC--EEEEEEGGGT
T ss_pred             ceEecCceecCCcEEEEEEEEEeccccCC-CEE--EEEEEECCCC
Confidence            100 0 00000    12467788866667 999  9999997654

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.37  E-value=4e-11  Score=90.61  Aligned_cols=166  Identities=15%  Similarity=0.082  Sum_probs=93.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc----------------cCCceEEe---CCceeEEEEecCCCCcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD----------------VGSERFSS---GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----------------~~~~~~~~---~~~~~~l~i~~~~~~d~  129 (261)
                      +.+.+|++++|.|.+.+.+.+ .+.|++...+....                ....++..   ......|.|.++..+|+
T Consensus        34 v~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~  112 (279)
T 2wbj_D           34 VISKSGTSVKIECRSLDFQAT-TMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS  112 (279)
T ss_dssp             EEEETTSCEEEEEEESSSCEE-EEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGC
T ss_pred             EEecCCCeEEEEEEeCCCCCC-eEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCC
Confidence            668899999999999776655 89999864221110                01123332   23456899999999999


Q ss_pred             eEEEEEEEcCCc------eEEeeEEEEEEeCC-CCCCCCcceEEe------ecCCeEEEEeecCCCCCCCe-EEEEEEEe
Q psy11549        130 GTLSCAAQNAIG------TQVTPCLYQVVLAG-KPQPPQNCSVRN------ETTSSVHISCTPGYDGGLPQ-TFTLELYS  195 (261)
Q Consensus       130 g~y~C~~~~~~~------~~~~~~~~~v~~~~-~p~~p~~~~v~~------~~~~~~~l~c~~~~~~~~p~-~~~~~~~~  195 (261)
                      |.|+|.+.+..+      .......+.|.... .+.+|. +.+..      ..|..++|.|.+  .+..|. ..+.|+++
T Consensus       113 G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~-v~~~~~~~~~~~~g~~v~L~C~~--~g~~P~~~~v~W~k~  189 (279)
T 2wbj_D          113 SFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPE-VAVFEPSEAEISHTQKATLVCLA--TGFYPDHVELSWWVN  189 (279)
T ss_dssp             EEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCE-EEEEECCHHHHHHHSCCEEEEEE--EEEBSSCEEEEEEET
T ss_pred             EEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCE-EEEECCCcccccCCCceEEEEEE--eeEcCCCcEEEEEEC
Confidence            999999998421      11122234443311 122333 22221      147899999997  444453 33444454


Q ss_pred             CCccceeEEEe--------cCCCC------cEEEcCCCCC-CccEEEEEEEEEcCCCcCC
Q psy11549        196 ASDLNLLVNLT--------NLDTP------AFTLEDLGLD-GTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       196 ~~~~~~~~~~~--------~~~~~------~~~i~~~~l~-~~~~Y~~~~~a~N~~G~~~  240 (261)
                      ...........        .....      .+.|...... +++.|  +|.|.|.....+
T Consensus       190 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~Y--tC~v~n~~~~~~  247 (279)
T 2wbj_D          190 GKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHF--RCQVQFYGLSEN  247 (279)
T ss_dssp             TEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEE--EEEEEECCBCTT
T ss_pred             CEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEE--EEEEEeCCCCCC
Confidence            32211111110        01122      2556553343 46789  999999877554

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=5.2e-12  Score=82.60  Aligned_cols=98  Identities=20%  Similarity=0.233  Sum_probs=66.8

Q ss_pred             EEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCC-ceEEeC----CceeEEEEecCCC
Q psy11549         52 KLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ERFSSG----SRGSMLRYTPVTE  126 (261)
Q Consensus        52 ~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~----~~~~~l~i~~~~~  126 (261)
                      .|.|.++|.+......    .......|.|.+.+.|.| .+.|++++..  +.... ..+...    .....|.|.++..
T Consensus         2 ~L~V~~pP~i~~~~~~----~~~~~~~l~C~~~g~P~p-~i~W~k~g~~--l~~~~~~~~~~~~~~~~~~~~L~i~~~~~   74 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEP----ELRLEHCIEFVVRGNPPP-TLHWLHNGQP--LRESKIIHVEYYQEGEISEGCLLFNKPTH   74 (118)
T ss_dssp             --CCCCCCCCCCCCCC----CCCCEEEEEEEEECSSCC-EEEEEETTEE--CCCSSSEEEEEEECSSEEEEEEEEESCCG
T ss_pred             EEEEecCCceeccCCC----eeccceEEEEEeeeeCCC-eEEEEECCEE--CCCCCceeEEEeccCccccEEEEECCCCh
Confidence            5677788876544322    133667899999999988 8999998742  22221 122211    1345799999999


Q ss_pred             CcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549        127 LDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      +|+|.|+|.|.|..|....  .+.+.+...|.
T Consensus        75 ~d~G~Y~C~a~N~~G~~~~--~~~l~v~~~P~  104 (118)
T 1wwc_A           75 YNNGNYTLIAKNPLGTANQ--TINGHFLKEPF  104 (118)
T ss_dssp             GGCEEEEEEEEETTEEEEE--EEEECCSCCCC
T ss_pred             hcCEEEEEEEECCCCeEee--EEEEEEccCCC
Confidence            9999999999999988777  45555555553

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.37  E-value=1.7e-12  Score=83.24  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=60.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      +.+..|+++.|.|.+.+.|.| .+.|++++.... ......+........|.|.++..+|+|.|+|.+.|..|.......
T Consensus        24 ~~v~~G~~v~L~C~~~g~p~p-~v~W~k~g~~l~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~  101 (106)
T 1nct_A           24 MTVYEGESARFSCDTDGEPVP-TVTWLRKGQVLS-TSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFT  101 (106)
T ss_dssp             EEESSSSCEECCEEEECSSCC-BCCBCSSSSCCT-TCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEE
T ss_pred             EEEeCCCcEEEEEEEEEcCCC-EEEEEECCEECC-CCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEE
Confidence            678899999999999998888 899999774321 112222333444568999999999999999999999988666433


Q ss_pred             E
Q psy11549        149 Y  149 (261)
Q Consensus       149 ~  149 (261)
                      +
T Consensus       102 l  102 (106)
T 1nct_A          102 L  102 (106)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.37  E-value=2.7e-13  Score=100.08  Aligned_cols=120  Identities=16%  Similarity=0.119  Sum_probs=72.0

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEE--EEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKL--RVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWK   95 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l--~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~   95 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+.. ....+.+  .+..+|.+...... .....|+.+.|.|.+.+.++ +..+.|+
T Consensus        82 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~-~~~~~g~~~~L~C~~~g~~P~~~~v~W~  160 (239)
T 1i1c_A           82 SELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPP-KEEMTQSQVSITCMVKGFYPPDIYTEWK  160 (239)
T ss_dssp             EEEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCC-GGGGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCC-hHHhcCCcEEEEEEEeeeECCCeEEEEE
Confidence            479999999999999999999987754 1222222  23345544321111 01124788999999998544 4589999


Q ss_pred             EcCCccccccCCceEE-eCCc----eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         96 FNNSGETLDVGSERFS-SGSR----GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        96 ~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +++..... ....... ..++    .+.|.+.....+|.|.|+|.|.|...
T Consensus       161 k~g~~l~~-~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l  210 (239)
T 1i1c_A          161 MNGQPQEN-YKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL  210 (239)
T ss_dssp             ETTEECSS-EEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             ECCEECCC-ceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence            98742110 0011111 1111    12344444334468999999999754

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=4.1e-12  Score=80.97  Aligned_cols=93  Identities=12%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+...... ..+..|+.+.|.|.+.+ +.+ .+.|++++.... ......+...+....|.|.++..+|+|.|+|.+.|
T Consensus         9 p~~~~~~~~-~~v~~G~~v~l~C~~~~-~~~-~v~W~k~g~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            9 AAIIKPLED-QWVAPGEDVELRCELSR-AGT-PVHWLKDRKAIR-KSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCEEECCCC-EEECTTSCEEECCEESS-SSC-CCCEEESSCBCC-CSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             cEEEecCCc-cEEcCCCCEEEEEEEeC-CCC-cEEEEECCEEcc-CCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            334333333 67889999999999997 555 799999874321 12222333344466899999999999999999998


Q ss_pred             CCceEEeeEEEEEEeCCCCCCCC
Q psy11549        139 AIGTQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus       139 ~~~~~~~~~~~~v~~~~~p~~p~  161 (261)
                      .    .  ..+.+.|..+|.+|.
T Consensus        85 ~----~--~~~~l~V~~~p~~~~  101 (103)
T 2edf_A           85 S----K--STASLHVEEKASGPS  101 (103)
T ss_dssp             C----E--EEEEEEECCCSSSSC
T ss_pred             C----C--cEEEEEEeCCCCCCC
Confidence            2    2  245566667776653

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.37  E-value=2.1e-12  Score=95.87  Aligned_cols=120  Identities=13%  Similarity=0.149  Sum_probs=73.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC---------------------CcceeeeEEEEEE----eeceeecCceeEEEeeCCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK---------------------GEATSNQLKLRVK----YAPICKSDRIVIVGASRSE   75 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~---------------------~~~~s~~~~l~V~----~~p~~~~~~~~~~~~~~g~   75 (261)
                      +|+|.+++.+|+|.|.|.+.+..                     .........|.|.    .+|.+...... ..+..|+
T Consensus        79 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~-~~~~~g~  157 (248)
T 3u2s_H           79 YLQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPS-SKSTSGG  157 (248)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC-------C
T ss_pred             EEEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCC-ccccCCC
Confidence            59999999999999999997642                     1111233566665    23333311111 2234689


Q ss_pred             cEEEEEEEeeCCC-CceeEEEEcCCcccccc------CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         76 SVDIHCAVEADPP-ARSFKWKFNNSGETLDV------GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        76 ~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .++|.|.+.+..+ +..+.|++++.......      .+..+..   .+.|.|......+ |.|+|.+.+..+....
T Consensus       158 ~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~---~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~  230 (248)
T 3u2s_H          158 TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSL---SSVVTVPSSSLGT-QTYICNVNHKPSNTKV  230 (248)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEE---EEEEEEEGGGBTT-BCCEEEEEEGGGTEEE
T ss_pred             cEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEE---EEEEEEChhhcCC-CeEEEEEEECCCCcce
Confidence            9999999998544 55899988764211110      1111111   2367788887778 9999999997655443

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.37  E-value=4.2e-13  Score=96.91  Aligned_cols=138  Identities=15%  Similarity=0.120  Sum_probs=74.5

Q ss_pred             CCCCeeccCCC-CceEEEECCeEEEcc---CCCC---CCEeEEEEEEeCCCcc-eeeeEEE--EEEeeceeecCceeEEE
Q psy11549          1 MAGGIPLAHNT-SARIILSNQSLVLQK---VSRQ---SAGTYKCSAINTKGEA-TSNQLKL--RVKYAPICKSDRIVIVG   70 (261)
Q Consensus         1 ~~ng~~l~~~~-~~~~~~~~~~L~i~~---~~~~---D~G~Y~C~~~~~~~~~-~s~~~~l--~V~~~p~~~~~~~~~~~   70 (261)
                      ||||+++.... .......++.|.+..   +...   |+|.|+|.|.|..+.. .+..+.+  .+..+|.+........ 
T Consensus        42 ~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~-  120 (207)
T 1l6x_A           42 YVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRD-  120 (207)
T ss_dssp             EETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGG-
T ss_pred             EECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChH-
Confidence            47887775321 112233345555432   3344   4999999999987754 1222222  2334554432111101 


Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccC-CceEEeC-Cc----eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVG-SERFSSG-SR----GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~~-~~----~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ...|..+.|.|.+.+.++ +..+.|++++..  +... ...+... ++    .+.|.+.....+|.|.|+|.|.|...
T Consensus       121 ~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~--~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l  196 (207)
T 1l6x_A          121 ELTKNQVSLTCLVKGFYPSDIAVEWESNGQP--ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL  196 (207)
T ss_dssp             GGGSSEEEEEEEEEEEBSSCCEEEEEETTEE--ECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             HhcCCcEEEEEEEeCeECCCeEEEEEECCee--ccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence            124667999999998644 348999998742  2111 1111111 11    12344544444578999999999753

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.36  E-value=2.3e-11  Score=91.36  Aligned_cols=165  Identities=13%  Similarity=0.093  Sum_probs=90.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---------------cCCceEEeC---CceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---------------VGSERFSSG---SRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~~~~~~---~~~~~l~i~~~~~~d~g  130 (261)
                      +.+..|++++|.|.+. .+.+ .+.|++...+....               ....++...   .....|.|.++..+|+|
T Consensus        36 v~v~~G~~v~L~C~~~-~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G  113 (268)
T 3pl6_D           36 KVTEKGKYVELRCDPI-SGHT-ALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSA  113 (268)
T ss_dssp             EEEETTCCEEEEEBCB-TTCC-EEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCE
T ss_pred             EEecCCCCEEEEEEeC-CCCc-eEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCE
Confidence            6788999999999986 3444 89999832211110               000233321   23568999999999999


Q ss_pred             EEEEEEEcC--CceEEeeEEEEEEeCC-CCCCCCcceEEe------ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccc
Q psy11549        131 TLSCAAQNA--IGTQVTPCLYQVVLAG-KPQPPQNCSVRN------ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLN  200 (261)
Q Consensus       131 ~y~C~~~~~--~~~~~~~~~~~v~~~~-~p~~p~~~~v~~------~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~  200 (261)
                      .|+|.+.+.  .........+.+.... .+.+|. +.+..      ..|..++|.|.+  .+..|.. .+.|+++.....
T Consensus       114 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~-v~~~~~~~~~~~~g~~v~L~C~~--~g~~p~~~~v~W~~~g~~l~  190 (268)
T 3pl6_D          114 VYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPE-VAVFEPSEAEISHTQKATLVCLA--TGFYPDHVELSWWVNGKEVH  190 (268)
T ss_dssp             EEEEEEESSSSSCEECCCEEEEEESCGGGCBCCE-EEEECCCHHHHHHHSEEEEEEEE--EEEBSSCEEEEEEESSSEEC
T ss_pred             EEEEEEecCCCceeeCCcEEEEEecCcccccCCc-eEEeCCCcccccCCCceEEEEEE--CcccCCCeEEEEEECCEECC
Confidence            999999974  2223333244443211 222332 12211      237899999997  4434432 333444432221


Q ss_pred             eeEEEe--------cCCCC------cEEEcCCCCCC-ccEEEEEEEEEcCCCcCC
Q psy11549        201 LLVNLT--------NLDTP------AFTLEDLGLDG-TVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       201 ~~~~~~--------~~~~~------~~~i~~~~l~~-~~~Y~~~~~a~N~~G~~~  240 (261)
                      ......        .....      .+.|......+ +|.|  +|.|.|.....+
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~Y--tC~v~~~~l~~~  243 (268)
T 3pl6_D          191 SGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHF--RCQVQFYGLSEN  243 (268)
T ss_dssp             TTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEE--EEEEEECCBCTT
T ss_pred             CCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEE--EEEEEcCCCCCC
Confidence            111100        01122      23454433344 8999  999999876543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.36  E-value=1.6e-11  Score=90.87  Aligned_cols=165  Identities=13%  Similarity=0.072  Sum_probs=89.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc------------ccC---CceEEe---CCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL------------DVG---SERFSS---GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~------------~~~---~~~~~~---~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+.+|++++|.| ..+.+.+ .+.|++...+...            ...   ..++..   ......|.|.++..+|+|
T Consensus        12 v~v~~G~~v~L~C-~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   89 (245)
T 4ei6_B           12 QIIDMGQMVTLNC-DPVSNHL-YFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSA   89 (245)
T ss_dssp             EEEETTCCEEEEE-ECCTTCC-EEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCE
T ss_pred             EEecCCCCEEEEE-EcCCCCC-EEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCE
Confidence            6688999999999 5555556 8999982211100            000   033332   223558999999999999


Q ss_pred             EEEEEEEcCC----ceEEeeEEEEEEeCC-CCCCCCcceEEe------ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCc
Q psy11549        131 TLSCAAQNAI----GTQVTPCLYQVVLAG-KPQPPQNCSVRN------ETTSSVHISCTPGYDGGLPQT-FTLELYSASD  198 (261)
Q Consensus       131 ~y~C~~~~~~----~~~~~~~~~~v~~~~-~p~~p~~~~v~~------~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~  198 (261)
                      .|.|.+.+..    ........+.+.... .+.+|. +.+..      ..|..++|.|.+  .+..|.. ...|+++...
T Consensus        90 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~-~~~~~~~~~~~~~g~~v~l~C~~--~g~~p~~~~v~W~~~g~~  166 (245)
T 4ei6_B           90 VYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPE-VAVFEPSEAEISHTQKATLVCLA--TGFYPDHVELSWWVNGKE  166 (245)
T ss_dssp             EEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCE-EEEECCCHHHHHHHSEEEEEEEE--EEEBSSCEEEEEEETTEE
T ss_pred             EEEEEEccCCCcceEEEcCCcEEEEecccCCCCCce-EEEeCCCcccccCCCceEEEEEE--eeEeCCCeEEEEEECCEE
Confidence            9999999532    222232244443211 112232 11211      237899999997  3434432 2334443221


Q ss_pred             cceeEEEec--------CCCC------cEEEcCCCCCC-ccEEEEEEEEEcCCCcCC
Q psy11549        199 LNLLVNLTN--------LDTP------AFTLEDLGLDG-TVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       199 ~~~~~~~~~--------~~~~------~~~i~~~~l~~-~~~Y~~~~~a~N~~G~~~  240 (261)
                      .........        ....      .+.|......+ ++.|  +|.|.|......
T Consensus       167 l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~y--tC~v~~~~l~~~  221 (245)
T 4ei6_B          167 VHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHF--RCQVQFYGLSEN  221 (245)
T ss_dssp             ECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEE--EEEEEECCBCTT
T ss_pred             CCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeE--EEEEEECCCCCc
Confidence            111111000        0112      25566543445 8899  999999776544

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.36  E-value=1.8e-11  Score=88.29  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=90.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-c--------CCceEEeC-----CceeEEEEecCCCCcCeEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-V--------GSERFSSG-----SRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-~--------~~~~~~~~-----~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +.+..|+.++|.|.+.... + .+.|++...+.... +        ...++...     .....|.|.++..+|+|.|.|
T Consensus        11 v~v~~G~~v~L~C~~~~~~-~-~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   88 (207)
T 1ypz_E           11 LSLHEGTDSALRCNFTTTM-R-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFC   88 (207)
T ss_dssp             EEEETTCCEEEEEEESSCC-S-EEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEE
T ss_pred             EEEccCCcEEEEEEEeCCC-e-EEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEE
Confidence            6788999999999998654 4 79999864322111 0        12233322     345689999999999999999


Q ss_pred             EEEcCCc---------e--EEeeEEEEEEeCC-CCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccce
Q psy11549        135 AAQNAIG---------T--QVTPCLYQVVLAG-KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNL  201 (261)
Q Consensus       135 ~~~~~~~---------~--~~~~~~~~v~~~~-~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~  201 (261)
                      .+.+..+         .  ......+.|.... .+.+|. +.+..   ..+.|.|.+  .+..|. ..+.|+++ .....
T Consensus        89 ~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~-v~~~~---~~~~l~C~~--~g~~P~~~~v~W~~~-~~l~~  161 (207)
T 1ypz_E           89 AADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPS-VFIMK---NGTNVACLV--KDFYPKEVTISLRSS-KKIVE  161 (207)
T ss_dssp             EEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCE-EEEEE---ETTEEEEEE--EEESSSCCEEEEECS-SEEEE
T ss_pred             EEecCCcccccccccceeeecCccEEEEccCCCCCCCCe-EEEeC---CCCeEEEEE--eeEeCCCeEEEEecC-CcccC
Confidence            9987532         1  1122344444321 223443 22222   237899987  444443 23334443 22111


Q ss_pred             eE-EEecCCCCcEEEcCCC-CCCccEEEEEEEEEcCCCcC
Q psy11549        202 LV-NLTNLDTPAFTLEDLG-LDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       202 ~~-~~~~~~~~~~~i~~~~-l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      .. .........|.+.... ..+.+.|  +|.+.|..+..
T Consensus       162 ~~~~~~~~~~g~y~~~~~~~~~~~~~y--tC~v~~~~~~~  199 (207)
T 1ypz_E          162 FDPAIVISPSGKYSAVKLGQYGDSNSV--TCSVQHNSETV  199 (207)
T ss_dssp             CCCEEEECTTSSEEEEECEEESSTTTC--EEEEEETTEEE
T ss_pred             CccceEEcCCCcEEEEEeecccCCCcE--EEEEEECCccE
Confidence            10 1111233556665422 2457889  99999988743

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}

Probab=99.36  E-value=2.1e-13  Score=113.80  Aligned_cols=167  Identities=16%  Similarity=0.127  Sum_probs=109.2

Q ss_pred             EEeeCCCcEEEEEEEe-------eCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDIHCAVE-------ADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~-------~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ..+..|++++|.|.+.       +.+.+ .|.|++++.  .+.....+ ...+..+.|.|.++...|.+ |+|.+.....
T Consensus        13 ~~v~~G~~v~l~C~~~~~~~~~~~~~~~-~i~W~~~~~--~i~~~~~~-~~~~~~~~l~i~~~~~~~~~-y~C~~~~~~~   87 (589)
T 3l5h_A           13 PVVQLHSNFTAVCVLKEKCMDYFHVNAN-YIVWKTNHF--TIPKEQYT-IINRTASSVTFTDIASLNIQ-LTCNILTFGQ   87 (589)
T ss_dssp             CCCCSSSCCCCCC-CCTTTTTTTTCCTT-TCCCBCSSS--BSCGGGCB-CCSSSCCBCCCCCCCSSCCC-CCCC-CCTTC
T ss_pred             CEEeCCCCEEEEEEEeCccCcccccccc-ceEEEeCCE--ECChHHcc-ccCCcEeEEEEecCCCccee-eEEecccCCC
Confidence            4467899999999997       44445 799988773  22221111 23444668999999888754 7898864221


Q ss_pred             eEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEc-CCCC
Q psy11549        142 TQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLE-DLGL  220 (261)
Q Consensus       142 ~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~l  220 (261)
                      .........+.+..+|.+|.++.........+.++|.++.+.+....|.+.++..................+.+. +  +
T Consensus        88 ~~~~~~~~~l~v~~pP~~P~nl~c~~~~~~~~~~~W~~~~~~~~~~~y~l~~~~~~~~~~~c~~~~~~~~~c~~~~~--l  165 (589)
T 3l5h_A           88 LEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS--T  165 (589)
T ss_dssp             C-CCCCCCCCCC-CCCCCCEEEEEEEETTSCEEEEEECCSCCSSCEEEEECCBCSSSBCCCEECBTTBSSCCBCCSC--C
T ss_pred             cccEEEeEEEeccCCCCCCEeeEEEECCCceEEEEECCCCcCCcCceEEEEEEEcCCCcccCCCCCCCcEEEEECCC--C
Confidence            111111334566689999999988877788999999986666556678888765443221122122223556666 5  8


Q ss_pred             CCccEEEEEEEEEcCCCcCCce
Q psy11549        221 DGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       221 ~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      .+...|.|+|.|.|..|.+...
T Consensus       166 ~~~~~Y~~~v~a~n~~G~~~s~  187 (589)
T 3l5h_A          166 VYFVNIEVWVEAENALGKVTSD  187 (589)
T ss_dssp             CSSSCEEECEEEEESSCCBCCC
T ss_pred             chheeEEEEEEEEeCCCCcccc
Confidence            8999999999999999986543

>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}

Probab=99.36  E-value=1.1e-11  Score=100.05  Aligned_cols=155  Identities=13%  Similarity=0.081  Sum_probs=106.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|++++|.|.+.   .+ .+.|++++..  +.  ..+  ..+....|.|.++...|.|.|.|...+.  ....  .
T Consensus       213 ~~v~~Gs~vtl~C~a~---~~-~I~W~~ng~~--i~--~~r--i~~~~~~L~I~nl~~sd~g~y~~~C~~~--~~i~--~  278 (488)
T 2q7n_A          213 KVVLAGSNMTICCMSP---TK-VLSGQIGNTL--RP--LIH--LYGQTVAIHILNIPVSENSGTNIIFITD--DDVY--G  278 (488)
T ss_dssp             CEEESSCCCEEEECCS---SC-EEEEEETTEE--CC--CEE--CSSSCEEEECCSCCCCCSSCEEEEEEES--SCEE--E
T ss_pred             CEEcCCCCEEEEEECC---CC-EEEEEECCEE--Cc--hhh--ccceEEEEEEeCCCcccCCcEEEEEEcC--CeEE--E
Confidence            3467999999999998   23 8999998742  21  112  3455668999999999988888876632  2222  3


Q ss_pred             EEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCC----CCeEEEEEEEeCCccceeEEEec---CCCCcEEEcCCCCC
Q psy11549        149 YQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGG----LPQTFTLELYSASDLNLLVNLTN---LDTPAFTLEDLGLD  221 (261)
Q Consensus       149 ~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~----~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~l~  221 (261)
                      ..+.+..+|.+|.++.........+.++|.++.+.+    ....|.+.++..+... .+....   .....+.+..  +.
T Consensus       279 ~~l~v~~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~-~c~~~~~~~~~~~~ct~~l--~~  355 (488)
T 2q7n_A          279 TVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSA-VFHRIEGLTNETYRLGVQM--HP  355 (488)
T ss_dssp             EEEEEECCCCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEE-EEECSSCCCSSCEEEEEEC--CS
T ss_pred             EEEEeeCCCCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCC-CCccccccCCceEEEEEcC--CC
Confidence            455667899999999887767889999999876653    2356998876543321 221111   1224456554  33


Q ss_pred             CccEEEEEEEEEcCCCcCC
Q psy11549        222 GTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       222 ~~~~Y~~~~~a~N~~G~~~  240 (261)
                      ....|.|+|.|.|.+|.+.
T Consensus       356 ~~t~Y~f~V~A~N~~G~~~  374 (488)
T 2q7n_A          356 GQEIHNFTLTGRNPLGQAQ  374 (488)
T ss_dssp             SCCCCEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeCCCCcc
Confidence            3588999999999999843

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.36  E-value=2.2e-12  Score=95.25  Aligned_cols=119  Identities=17%  Similarity=0.236  Sum_probs=70.4

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC---c-ceeeeEEEEEEe------eceeecCceeEEEeeCCCcEEEEEEEeeC-CC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG---E-ATSNQLKLRVKY------APICKSDRIVIVGASRSESVDIHCAVEAD-PP   88 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~---~-~~s~~~~l~V~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~   88 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+   . .......|.|..      +|.+.........+..|+.+.|.|.+.+. |.
T Consensus        72 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~  151 (238)
T 1bec_A           72 FSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPD  151 (238)
T ss_dssp             EEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSC
T ss_pred             EEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCC
Confidence            3899999999999999999988742   1 112335677764      33332111110123479999999999986 44


Q ss_pred             CceeEEEEcCCccccccCCc---e-EEeCCce----eEEEEecCCCCc-CeEEEEEEEcCC
Q psy11549         89 ARSFKWKFNNSGETLDVGSE---R-FSSGSRG----SMLRYTPVTELD-YGTLSCAAQNAI  140 (261)
Q Consensus        89 ~~~~~W~~~~~~~~~~~~~~---~-~~~~~~~----~~l~i~~~~~~d-~g~y~C~~~~~~  140 (261)
                      +..+.|++++..  +.....   . ....+..    +.|.|......| .|.|+|.|.+..
T Consensus       152 ~~~v~W~~~g~~--~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~  210 (238)
T 1bec_A          152 HVELSWWVNGKE--VHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG  210 (238)
T ss_dssp             CEEEEEEETTEE--ECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred             CcEEEEEECCEE--CCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence            558999997742  211110   0 1111111    123333222223 678999999864

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.35  E-value=1.3e-11  Score=76.89  Aligned_cols=77  Identities=12%  Similarity=0.047  Sum_probs=55.3

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+..+... +.+.+|+.+.|.|.+.+. ++ .+.|++++.... ......+...+....|.|.++..+|+|.|+|.|.|
T Consensus         6 ~~~~~~~~~-~~v~~G~~v~l~C~v~~~-~~-~v~W~k~g~~i~-~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            6 IEVEKPLYG-VEVFVGETAHFEIELSEP-DV-HGQWKLKGQPLA-ASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCEEECCCC-EEEETTSCEEEEEEESSS-SC-CCEEEETTEECC-CBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             cEeeccCcc-eEEeCCCCEEEEEEECCC-CC-eEEEEECCEECc-CCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            334444444 678899999999999764 45 799999874221 12223334455566899999999999999999987


Q ss_pred             C
Q psy11549        139 A  139 (261)
Q Consensus       139 ~  139 (261)
                      .
T Consensus        82 ~   82 (93)
T 1waa_A           82 T   82 (93)
T ss_dssp             E
T ss_pred             C
Confidence            4

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.35  E-value=7.6e-12  Score=84.96  Aligned_cols=120  Identities=14%  Similarity=0.181  Sum_probs=63.4

Q ss_pred             EEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccc-----cccCCceEE
Q psy11549         37 CSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGET-----LDVGSERFS  111 (261)
Q Consensus        37 C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~-----~~~~~~~~~  111 (261)
                      |...+..|...+..+...+...|.........+.+..|++++|.|.+.+.+.+ .+.|++.+....     ......++.
T Consensus        16 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~-~i~W~~~~~~~i~~~~~~~~~~~r~~   94 (145)
T 1z9m_A           16 HMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDS-SLQWSNPAQQTLYFGEKRALRDNRIQ   94 (145)
T ss_dssp             ----------------------CCTTCCBCCCEEEETTSCEEEEEECSCCTTC-CEEEECTTCCEEEETTEECSCCTTEE
T ss_pred             hccCCCCCcCchHhHhhhheecccceecCCceEEEEcCCCEEEEEEEcCCCCc-EEEEECCCCcEEEECCceecccCCEE
Confidence            34455555543333333333333332222233788999999999999988866 899985321100     011222322


Q ss_pred             ---eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCC
Q psy11549        112 ---SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPP  160 (261)
Q Consensus       112 ---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p  160 (261)
                         .......|.|.++..+|+|.|+|.+.|. +....  .+.+.|..+|.+|
T Consensus        95 ~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~-~~~~~--~~~L~V~~~P~~P  143 (145)
T 1z9m_A           95 LVTSTPHELSISISNVALADEGEYTCSIFTM-PVRTA--KSLVTVLGIPQKP  143 (145)
T ss_dssp             EEEECSSEEEEEECSCCGGGCEEEEEEECSS-SCEEE--EEEEEEECCCC--
T ss_pred             EecCCCCeEEEEECCCChhhCEEEEEEEEcC-CCceE--EEEEEEEeCCCCC
Confidence               2334568999999999999999999998 66555  4445555677665

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.35  E-value=3.9e-12  Score=77.54  Aligned_cols=68  Identities=15%  Similarity=0.288  Sum_probs=52.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      +.+..|+.+.|.|.+.+ |.| .+.|++++... .......+...+....|.|.++..+|+|.|+|.|.|.
T Consensus         6 v~~~~G~~v~l~C~vs~-p~p-~v~W~k~g~~l-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~   73 (84)
T 2lu7_A            6 VRSTPGGDLELVVHLSG-PGG-PVRWYKDGERL-ASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD   73 (84)
T ss_dssp             EEECTTSCEEEECCCSC-CST-TCEEEETTEEC-CCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT
T ss_pred             EEEecCCCEEEEEEECC-CCc-EEEEEECCEEc-cccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE
Confidence            67889999999999865 666 79999987422 2223334445566678999999999999999998664

>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.35  E-value=2.6e-11  Score=79.60  Aligned_cols=100  Identities=17%  Similarity=0.294  Sum_probs=77.4

Q ss_pred             EeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCC-cccee-E-EEecCCCCcEEEcCCCCCCccEEE
Q psy11549        152 VLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSAS-DLNLL-V-NLTNLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       152 ~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~-~~~~~-~-~~~~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      ....+|.+|.++.+.......+.|.|.++.+++.++ .|.++|+... ..... . .........++|.+  |.++..|.
T Consensus        13 ~~~~~P~~P~~~~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~v~~--L~p~t~Y~   90 (121)
T 1x4z_A           13 GRLSPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITG--LEKGISYK   90 (121)
T ss_dssp             SSCCCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEES--CCTTCEEE
T ss_pred             CcCCCCccCCCCEEEEccCCEEEEEEECCCCCCCcceEEEEEEEECCCCCceEEeecccCCCcCEEEECC--CCCCCEEE
Confidence            445788999999998888999999999877777774 5999998765 22111 1 11234568899999  99999999


Q ss_pred             EEEEEEcCCCcCCceeeee-eeecccc
Q psy11549        228 VVISGVNAKGRSLPVIWDD-FSMSGAH  253 (261)
Q Consensus       228 ~~~~a~N~~G~~~~s~~~~-~~~~~~~  253 (261)
                      |+|.|.|..|.+.+|.... ++.+...
T Consensus        91 frV~A~n~~G~s~~S~~~~~v~~~~~~  117 (121)
T 1x4z_A           91 FRVRALNMLGESEPSAPSRPYVVSGSG  117 (121)
T ss_dssp             EEEEEEETTEECCCCCCCCCEECCSSC
T ss_pred             EEEEEEcCCCcCCCcCCCCCEEcCCCC
Confidence            9999999999999998875 5444433

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.34  E-value=3.3e-12  Score=93.75  Aligned_cols=120  Identities=14%  Similarity=0.113  Sum_probs=72.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC--CCc-ceeeeEEEEEEe---------eceeecCceeEEEeeCCCcEEEEEEEeeC-C
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT--KGE-ATSNQLKLRVKY---------APICKSDRIVIVGASRSESVDIHCAVEAD-P   87 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~--~~~-~~s~~~~l~V~~---------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~   87 (261)
                      +|.|.+++.+|+|.|.|.+.+.  ... .....+.|.|..         +|...........+..|+.++|.|.+.+. |
T Consensus        80 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P  159 (230)
T 1ypz_F           80 ILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFP  159 (230)
T ss_dssp             EEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESS
T ss_pred             EEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecC
Confidence            8999999999999999999874  111 112345777762         12211000000123358899999999987 5


Q ss_pred             CCceeEEEE-cCCccccccCCceEEeCC---ceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         88 PARSFKWKF-NNSGETLDVGSERFSSGS---RGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        88 ~~~~~~W~~-~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      .+..+.|++ ++..............++   ..+.|.|..... + |.|+|.+.+....
T Consensus       160 ~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~  216 (230)
T 1ypz_F          160 DVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK  216 (230)
T ss_dssp             CCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred             CCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence            445899998 553211000001111111   124678877665 4 9999999997653

>1x4x_A Fibronectin type-III domain containing protein 3A; FN3, immunoglobulin-like beta- sandwich fold, KIAA0970, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.34  E-value=1.4e-11  Score=78.90  Aligned_cols=97  Identities=7%  Similarity=-0.007  Sum_probs=76.0

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      ..+|.+|.++.+.......+.|.|.++.+++.++ .|.++++......  ..........+.|.+  |.+++.|.|+|.|
T Consensus         5 ~~~P~~P~~~~~~~~s~~sv~l~W~~p~~~g~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~v~~--L~p~t~Y~frV~A   80 (106)
T 1x4x_A            5 SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSM--QICYCGPGLSYEIKG--LSPATTYYCRVQA   80 (106)
T ss_dssp             CCSCCCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTSC--CEEEEESCSEEEEES--CCSSCEEEEEEEE
T ss_pred             CCCcCCCCCCEEEEcCCCEEEEEEcCCCCCCCcceEEEEEEEcCCCce--EEEEeCCcceEEEcC--CCCCCEEEEEEEE
Confidence            3578888888888788999999999877666564 4999987654332  122223457899999  9999999999999


Q ss_pred             EcCCCcCCceeeeeeeeccccc
Q psy11549        233 VNAKGRSLPVIWDDFSMSGAHY  254 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~~~~~~  254 (261)
                      .|..|.+.+|..+.+.+....+
T Consensus        81 ~n~~G~g~~S~~v~~~T~~~~P  102 (106)
T 1x4x_A           81 LSVVGAGPFSEVVACVTPPSSG  102 (106)
T ss_dssp             ECSSCCCCBCCCEEEECCCCCS
T ss_pred             EcCCcCCCCcCCEEEECCCCCc
Confidence            9999999999998888765544

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.34  E-value=1.7e-12  Score=96.75  Aligned_cols=117  Identities=19%  Similarity=0.170  Sum_probs=70.7

Q ss_pred             EEEccCCCCCCEeEEEEEEeCCC---c--ceeeeEEEEEEe------eceeecCceeEEEeeCCCcEEEEEEEeeC-CCC
Q psy11549         22 LVLQKVSRQSAGTYKCSAINTKG---E--ATSNQLKLRVKY------APICKSDRIVIVGASRSESVDIHCAVEAD-PPA   89 (261)
Q Consensus        22 L~i~~~~~~D~G~Y~C~~~~~~~---~--~~s~~~~l~V~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~   89 (261)
                      |.|.+++.+|+|.|+|.+.+..+   .  .......|.|..      +|.+.........+..|+.++|.|.+.+. |.+
T Consensus        76 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~  155 (253)
T 3to4_D           76 LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  155 (253)
T ss_dssp             CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCc
Confidence            99999999999999999987643   1  112334677753      22222110000112246899999999985 445


Q ss_pred             ceeEEEEcCCccccccCCceE----E-----eCCc---eeEEEEecCCCCc-CeEEEEEEEcCC
Q psy11549         90 RSFKWKFNNSGETLDVGSERF----S-----SGSR---GSMLRYTPVTELD-YGTLSCAAQNAI  140 (261)
Q Consensus        90 ~~~~W~~~~~~~~~~~~~~~~----~-----~~~~---~~~l~i~~~~~~d-~g~y~C~~~~~~  140 (261)
                      ..+.|++++..  +.......    .     .++.   .+.|.|.....+| .|.|+|.|.+..
T Consensus       156 i~v~W~k~g~~--l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          156 VELSWWVNGKE--VHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEEEEEETTEE--ECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             EEEEEEECCEE--CCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            58999997642  21111000    0     0111   1357777766666 779999999864

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.34  E-value=8.4e-12  Score=90.60  Aligned_cols=164  Identities=13%  Similarity=0.193  Sum_probs=91.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc---------------cCCceEEe----CCceeEEEEecCCCCc
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD---------------VGSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      +.+..|++++|.|.+.+.+. ...+.|++...+....               ....++..    ......|.|.++..+|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (215)
T 1c5d_H           10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED   89 (215)
T ss_dssp             CEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGG
T ss_pred             eeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCccc
Confidence            45779999999999987652 2379999864221110               01223332    2234589999999999


Q ss_pred             CeEEEEEEEcCCce---EEeeEEEEEEeCCCCCCCCcceEE----eecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccc
Q psy11549        129 YGTLSCAAQNAIGT---QVTPCLYQVVLAGKPQPPQNCSVR----NETTSSVHISCTPGYDGGLPQT-FTLELYSASDLN  200 (261)
Q Consensus       129 ~g~y~C~~~~~~~~---~~~~~~~~v~~~~~p~~p~~~~v~----~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~  200 (261)
                      +|.|.|.+.+..+.   ......+.|.. .+|.+|......    ...|..++|.|.+  .+..|.. .+.|++......
T Consensus        90 ~G~Y~C~~~~~~~~~~~~~~~~~L~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~--~g~~P~p~~v~W~~~g~~~~  166 (215)
T 1c5d_H           90 TAIYFCTREDGWNYFDYWGPGTMVTVSS-AQTTAPSVYPLAPGCGDTTSSTVTLGCLV--KGYFPEPVTVTWNSGALSSD  166 (215)
T ss_dssp             CEEEEEEECCSSSCSCCBCCCEEEEECS-SCCBCCCEEEECCCSSCCCCSSEEEEEEE--EEEBSSCCEEEEGGGTTCCS
T ss_pred             CEEEEEEEecCCcccceEcCCEEEEecC-CCCCCCeEEeccCChhhccCCcEEEEEEE--eeeEcCCcEEEEccCCccCc
Confidence            99999999986421   11222444432 233334322111    1358899999997  4443533 333433332211


Q ss_pred             e-eE-EEecCCCCcEE----EcCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549        201 L-LV-NLTNLDTPAFT----LEDLGLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       201 ~-~~-~~~~~~~~~~~----i~~~~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      . .. .....  ..+.    |......+ +.|  +|.|.|..|...
T Consensus       167 ~~~~~~~~~~--g~~~~~s~L~~~~~~~-g~y--tC~v~n~~~~~~  207 (215)
T 1c5d_H          167 VHTFPAVLQS--GLYTLTSSVTSSTWPS-QTV--TCNVAHPASSTK  207 (215)
T ss_dssp             CCBCCCEEET--TEEEEEEEEEESSTTT-SCC--EEEEEEGGGTEE
T ss_pred             eEecCcccCC--CCEEEEEEEecccCCC-CeE--EEEEEeCCCCcc
Confidence            0 00 01111  2222    22322344 889  999999998643

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.34  E-value=1.6e-11  Score=76.90  Aligned_cols=74  Identities=16%  Similarity=0.250  Sum_probs=57.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.| + .+.|++++..  +.. ..++....  ..|.|.++..+|+|.|+|.|.|..|.......
T Consensus        19 ~~v~~G~~v~l~C~~~g~p-p-~i~W~k~g~~--~~~-~~~~~~~~--~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~   91 (95)
T 2ckn_A           19 LLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQ--LVE-SNRTRITG--EEVEVRDSIPADSGLYACVTSSPSGSDTTYFS   91 (95)
T ss_dssp             EEECTTSCEEEECCEESSC-C-EEEEEBTTBC--CCC-CSSEEECS--SEEEESSCCGGGSEEEEEEEEETTEEEEEEEE
T ss_pred             EEEcCCCeEEEEEECCCCC-C-ceEEEECCEe--cCC-CCCEEEeC--CEEEECCCChHHCEEEEEEeccCCCcEEEEEE
Confidence            6788999999999999986 5 8999997642  222 22344433  37999999999999999999999888766433


Q ss_pred             E
Q psy11549        149 Y  149 (261)
Q Consensus       149 ~  149 (261)
                      +
T Consensus        92 l   92 (95)
T 2ckn_A           92 V   92 (95)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.34  E-value=6.3e-12  Score=77.86  Aligned_cols=79  Identities=19%  Similarity=0.215  Sum_probs=56.4

Q ss_pred             eceeecCcee-EEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         58 APICKSDRIV-IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        58 ~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      |+.+..+... .+.+..|+.+.|.|.+.+ |.+ .+.|++++... .......+...+....|.|.++..+|+|.|+|.|
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~-~v~W~k~g~~i-~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a   80 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDA-PVRWYKDGQEV-EESDFVVLENEGPHRRLVLPATQPSDGGEFQCVA   80 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTS-CCEEEETTSCC-CCCSSCEEEEETTEEEEEESSCCGGGCSEEEEEC
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCc-EEEEEECCEEe-eeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEE
Confidence            3444444322 255678999999999865 656 79999988532 2223334455666678999999999999999999


Q ss_pred             EcC
Q psy11549        137 QNA  139 (261)
Q Consensus       137 ~~~  139 (261)
                      .|.
T Consensus        81 ~n~   83 (91)
T 2lvc_A           81 GDE   83 (91)
T ss_dssp             SSC
T ss_pred             cce
Confidence            764

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=5.6e-12  Score=80.40  Aligned_cols=76  Identities=11%  Similarity=0.164  Sum_probs=55.4

Q ss_pred             eecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        61 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      +...... ..+.+|+.+.|.|.+.+.+.+..+.|++++.... ......+...+....|.|.++..+|+|.|+|.+.+
T Consensus        11 ~~~~~~~-~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~-~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~   86 (104)
T 2eny_A           11 ITKRLKT-MEVLEGESCSFECVLSHESASDPAMWTVGGKTVG-SSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG   86 (104)
T ss_dssp             CSBCCCC-EEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCS-BCSSCEEEEETTEEEEEECSCCTTTCSCEEEEETT
T ss_pred             EEecCCC-cEEcCCCcEEEEEEEcCCCCCceeEEEECCEECC-CCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEECC
Confidence            3333333 7788999999999999877544799999875322 22223334455566899999999999999999865

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.33  E-value=6.8e-12  Score=93.64  Aligned_cols=121  Identities=13%  Similarity=0.132  Sum_probs=72.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC---------c-ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG---------E-ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEAD   86 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~---------~-~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~   86 (261)
                      +|+|.+++.+|+|.|+|.+.+..+         . .......|.|..    +|.+...... ..+..|+.++|.|.+.+.
T Consensus       103 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~~g~~v~L~C~~~~~  181 (256)
T 3sob_H          103 YLQMNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPS-SKSTSGGTAALGCLVKDY  181 (256)
T ss_dssp             EEEECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC------TTEEEEEEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCC-cccccCCcEEEEEEEEEE
Confidence            499999999999999999986531         1 112335677752    2333211111 234589999999999885


Q ss_pred             CC-CceeEEEEcCCccccccCCc-eEEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         87 PP-ARSFKWKFNNSGETLDVGSE-RFSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        87 ~~-~~~~~W~~~~~~~~~~~~~~-~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .+ +..+.|  ++.......... .....+    ..+.|.|.....+| |.|+|.+.+..+....
T Consensus       182 ~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~  243 (256)
T 3sob_H          182 FPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  243 (256)
T ss_dssp             BSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEE
T ss_pred             ECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcce
Confidence            44 558999  432211100000 011111    12468889888889 9999999997765444

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.33  E-value=2.9e-12  Score=95.44  Aligned_cols=120  Identities=14%  Similarity=0.168  Sum_probs=72.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC--cceeeeEEEEEEe------eceeecCceeEEEeeCCCcEEEEEEEeeC-CCCc
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG--EATSNQLKLRVKY------APICKSDRIVIVGASRSESVDIHCAVEAD-PPAR   90 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~--~~~s~~~~l~V~~------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~   90 (261)
                      .+|.|.+++.+|+|.|+|.+.+...  ........|.|..      +|.+.........+..|+.++|.|.+.+. |.+.
T Consensus        76 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~  155 (252)
T 1oga_E           76 FPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  155 (252)
T ss_dssp             CCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCc
Confidence            5899999999999999999988621  1112234577753      33322111000112368999999999986 4445


Q ss_pred             eeEEEEcCCccccccCCceEE---------eCCc----eeEEEEecCCCC-cCeEEEEEEEcCCce
Q psy11549         91 SFKWKFNNSGETLDVGSERFS---------SGSR----GSMLRYTPVTEL-DYGTLSCAAQNAIGT  142 (261)
Q Consensus        91 ~~~W~~~~~~~~~~~~~~~~~---------~~~~----~~~l~i~~~~~~-d~g~y~C~~~~~~~~  142 (261)
                      .+.|++++..  +.... ...         ..+.    .+.|.|...... +.+.|+|.+.+....
T Consensus       156 ~v~W~~~g~~--l~~~~-~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          156 ELSWWVNGKE--VHSGV-STDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             EEEEEETTEE--ECSSE-EECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EEEEEECCEE--CCCCc-ccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            8999997742  21111 100         0111    224667655443 578999999997543

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.33  E-value=1.2e-11  Score=86.61  Aligned_cols=114  Identities=11%  Similarity=0.079  Sum_probs=78.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCC--ceeEEEEcC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPA--RSFKWKFNN   98 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~   98 (261)
                      .|.|.+++. | |.|.|.+... +...+..+.|+|..+|...........+.+|+.++|.|.+.+..++  ..|.|++++
T Consensus        51 ~l~l~~vs~-~-g~y~C~~~c~-~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~  127 (185)
T 1iam_A           51 VYELSNVQE-D-SQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGE  127 (185)
T ss_dssp             EEEEEEECS-C-BCCEEEEECS-SCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred             EEEEEecCc-C-CEEEEEEECC-CCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCC
Confidence            689999983 4 9999998554 4445778999998777654333221337799999999999997664  258999977


Q ss_pred             CccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         99 SGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .....    ...........|.+.....+|...|+|.|.+..+
T Consensus       128 ~~l~~----~~~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A          128 KELKR----EPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             EEEEE----EECCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             EEccc----ccCCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence            42111    1111122233577766666666699999998765

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.33  E-value=1.4e-11  Score=91.02  Aligned_cols=165  Identities=12%  Similarity=0.062  Sum_probs=90.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--------------cCCceEEe---CCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--------------VGSERFSS---GSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~~~~~---~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|+.+.|.|.+.+ +.+ .+.|++...+....              ....++..   ......|.|.++..+|+|.
T Consensus        12 v~v~~G~~v~L~C~~~~-~~~-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~   89 (240)
T 3q5y_A           12 IIKEKGGRSVLTCIPIS-GHS-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM   89 (240)
T ss_dssp             EEEETTCCEEEEEECCT-TCC-EEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred             eeecCCCcEEEEEEeCC-CCc-eEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEE
Confidence            66889999999999875 445 89999833211100              00112222   2335579999999999999


Q ss_pred             EEEEEEcC--C-ceEEeeEEEEEEeC-CCCCCCCcceEEe------ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccc
Q psy11549        132 LSCAAQNA--I-GTQVTPCLYQVVLA-GKPQPPQNCSVRN------ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLN  200 (261)
Q Consensus       132 y~C~~~~~--~-~~~~~~~~~~v~~~-~~p~~p~~~~v~~------~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~  200 (261)
                      |.|.+.+.  . ........+.+... ..+.+|.. .+..      ..|..++|.|.+  .+..|.. ...|+++.....
T Consensus        90 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~-~~~~~~~~~~~~g~~v~L~C~~--~g~~P~~~~v~W~~~g~~l~  166 (240)
T 3q5y_A           90 YFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKV-SLFEPSKAEIANKQKATLVCLA--RGFFPDHVELSWWVNGKEVH  166 (240)
T ss_dssp             EEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEE-EEECCCHHHHHHHSEEEEEEEE--EEEBSSCEEEEEEETTEEEC
T ss_pred             EEEEEccCCCcceEEcCCEEEEEeccccCCCCCee-EEeCCchhhcccCCceEEEEEE--eeEECCCeEEEEEECCEECc
Confidence            99999832  1 12222223444321 12233321 2211      237899999997  3434433 233444332211


Q ss_pred             eeEEE----ecCCC------CcEEEcCCCCCC-ccEEEEEEEEEcCCCcCC
Q psy11549        201 LLVNL----TNLDT------PAFTLEDLGLDG-TVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       201 ~~~~~----~~~~~------~~~~i~~~~l~~-~~~Y~~~~~a~N~~G~~~  240 (261)
                      .....    .....      ..+.|......+ ++.|  +|.|.|......
T Consensus       167 ~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~Y--tC~v~~~~~~~~  215 (240)
T 3q5y_A          167 SGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHF--RCQVQFHGLSEE  215 (240)
T ss_dssp             TTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEE--EEEEEECCBCTT
T ss_pred             CcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEE--EEEEEcCCCCCc
Confidence            00000    00011      236666644556 6799  999999876443

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.33  E-value=1.1e-11  Score=78.96  Aligned_cols=83  Identities=19%  Similarity=0.196  Sum_probs=57.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC--CceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG--SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +.+..|+.+.|.|.+.+ +.+ .+.|++++..... ..  ...+...+....|.|.++..+|+|.|+|.+.|    ... 
T Consensus        17 ~~v~~G~~v~l~C~~~~-~~~-~v~W~k~g~~l~~-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~-   88 (103)
T 1x44_A           17 TTAYCGERVELECEVSE-DDA-NVKWFKNGEEIIP-GPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----GQS-   88 (103)
T ss_dssp             EEEETTEEEEEEEECSS-SSC-CCEEEETTEECCC-STTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----EEE-
T ss_pred             EEEECCCCEEEEEEecC-CCC-eEEEEECCEECCC-CCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC----CcE-
Confidence            67889999999999977 555 8999998742211 11  11333444556899999999999999999987    233 


Q ss_pred             EEEEEEeCCCCCCC
Q psy11549        147 CLYQVVLAGKPQPP  160 (261)
Q Consensus       147 ~~~~v~~~~~p~~p  160 (261)
                       ...+.|..+|.++
T Consensus        89 -~~~l~V~~~p~p~  101 (103)
T 1x44_A           89 -SAKLSVDLKSGPS  101 (103)
T ss_dssp             -EEEEEEECCCSCC
T ss_pred             -EEEEEEeCCCCCC
Confidence             3344444555443

>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.33  E-value=2.2e-11  Score=78.29  Aligned_cols=96  Identities=10%  Similarity=0.036  Sum_probs=75.8

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      ..|.+|.++.+.......+.|.|.++...+.++ .|.+.|+..................+.|.+  |.++..|.|+|.|.
T Consensus         6 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~--L~p~t~Y~~~V~A~   83 (108)
T 2djs_A            6 SGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDG--LRPGMVYVVQVRAR   83 (108)
T ss_dssp             CCCCCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCSTTCEEEEESSSEEEEES--CCTTCEEEEEEEEE
T ss_pred             CCCCCCcceEEEecCCCEEEEEECCCCCCCCeEEEEEEEEEECCCCCcceeEEecCccEEEEcC--CCCCCEEEEEEEEE
Confidence            567888899988888999999999865554554 499998876543222223334558899999  99999999999999


Q ss_pred             cCCCcCCceeeeeeeeccc
Q psy11549        234 NAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       234 N~~G~~~~s~~~~~~~~~~  252 (261)
                      |..|.+.+|..+.+++...
T Consensus        84 n~~G~g~~S~~~~~~T~~~  102 (108)
T 2djs_A           84 TVAGYGKFSGKMCFQTLTD  102 (108)
T ss_dssp             ESSCEEEECCCEEEECCCS
T ss_pred             eCCEECCCCCCEEEEeCCC
Confidence            9999999999988877644

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.33  E-value=4.9e-11  Score=75.14  Aligned_cols=76  Identities=18%  Similarity=0.326  Sum_probs=56.8

Q ss_pred             EEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeE
Q psy11549         69 VGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~  147 (261)
                      ..+..|+++.|.|.+. +.|.+ .+.|++++....   ....+...   ..|.|.++..+|+|.|+|.+.|..|......
T Consensus        20 ~~v~~G~~v~l~C~~~~~~p~~-~v~W~k~~~~~~---~~~~~~~~---~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~   92 (98)
T 1gl4_B           20 QSVRPGADVTFICTAKSKSPAY-TLVWTRLHNGKL---PSRAMDFN---GILTIRNVQPSDAGTYVCTGSNMFAMDQGTA   92 (98)
T ss_dssp             EEECTTCCEEEEEEEEESSSCC-EEEEEEGGGBCC---CTTEEEET---TEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eEEecCCCEEEEEeCCCCCCCc-EEEEEeCCCCCC---CceeecCC---CEEEEeCCChhhCEEEEEEecCCCCccccEE
Confidence            6788999999999998 46666 899999753221   11222222   2699999999999999999999998877654


Q ss_pred             EEEE
Q psy11549        148 LYQV  151 (261)
Q Consensus       148 ~~~v  151 (261)
                      .+.|
T Consensus        93 ~l~V   96 (98)
T 1gl4_B           93 TLHV   96 (98)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4443

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=7.1e-12  Score=80.99  Aligned_cols=82  Identities=17%  Similarity=0.101  Sum_probs=58.2

Q ss_pred             EEeeCCCcEEEEEEEeeC---CCCceeEEEEcCCcccccc-CCceEEe----CC----ceeEEEEecCCCCcCeEEEEEE
Q psy11549         69 VGASRSESVDIHCAVEAD---PPARSFKWKFNNSGETLDV-GSERFSS----GS----RGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~---~~~~~~~W~~~~~~~~~~~-~~~~~~~----~~----~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      +.+.+|+.++|.|.+.+.   |.| .+.|+++.. ..+.. ...++..    ..    ....|.|.++..+|+|.|+|++
T Consensus        22 v~V~eG~~v~L~C~v~g~~~~p~P-~V~W~Kgk~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cev   99 (118)
T 2edn_A           22 VSVETGKDAVVVAKVNGKELPDKP-TIKWFKGKW-LELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEV   99 (118)
T ss_dssp             CEEETTSCEECCEEEETTTSSSCC-CCEEEETTT-CCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEE
T ss_pred             eEEeCCCCEEEEEEEeccCCCCCC-cEEEeeCCE-eccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEE
Confidence            678899999999999875   456 899999641 11111 1122222    11    1468999999999999999999


Q ss_pred             EcCCceEEeeEEEEEE
Q psy11549        137 QNAIGTQVTPCLYQVV  152 (261)
Q Consensus       137 ~~~~~~~~~~~~~~v~  152 (261)
                      .|..|..+....|.|.
T Consensus       100 sn~~g~~s~~~~L~V~  115 (118)
T 2edn_A          100 KAKDTCDSCGFNIDVE  115 (118)
T ss_dssp             ECSSCEEEEEECCEEE
T ss_pred             EEcCCcEEEEEEEEEE
Confidence            9999976665454443

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.32  E-value=7.9e-12  Score=91.49  Aligned_cols=120  Identities=14%  Similarity=0.149  Sum_probs=73.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC-------c-ceeeeEEEEEEe----eceeecCceeEEEeeCCCcEEEEEEEeeCCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG-------E-ATSNQLKLRVKY----APICKSDRIVIVGASRSESVDIHCAVEADPP   88 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~-------~-~~s~~~~l~V~~----~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~   88 (261)
                      +|.|.+++.+|+|.|.|.+.+..+       . .......|.|..    +|.+...... .....|+.+.|.|.+.+..+
T Consensus        80 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~-~~~~~g~~~~l~C~~~~~~p  158 (226)
T 3mlr_H           80 YLQWTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPS-SKSTSGGTAALGCLVKDYFP  158 (226)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEE-ECSTTSSEEEEEEEEEEEBS
T ss_pred             EEEECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCc-ccccCCCCEEEEEEEEEEEC
Confidence            599999999999999999976431       0 111234566642    2333211111 23458999999999988644


Q ss_pred             -CceeEEEEcCCccccccCC-ceEEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         89 -ARSFKWKFNNSGETLDVGS-ERFSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        89 -~~~~~W~~~~~~~~~~~~~-~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                       +..+.|  ++......... ......+    ..+.|.|.....+| |.|+|.+.+..+...
T Consensus       159 ~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~  217 (226)
T 3mlr_H          159 EPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  217 (226)
T ss_dssp             SCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEE
T ss_pred             CCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcC
Confidence             558999  33222111000 0011111    12368888888888 999999999766543

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.32  E-value=1.3e-11  Score=91.94  Aligned_cols=174  Identities=13%  Similarity=0.107  Sum_probs=96.6

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----------------cCCceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----------------VGSERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----------------~~~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +.+.+|++++|.|.+.+.. ....+.|++...+....                ....++..    ......|.|.++..+
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (253)
T 3liz_H           10 GLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSE   89 (253)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            5577999999999998633 22379999853221110                00122222    134557999999999


Q ss_pred             cCeEEEEEEEcCC----ceEEeeEEEEEEeCCCCCCCCcce----EEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCc
Q psy11549        128 DYGTLSCAAQNAI----GTQVTPCLYQVVLAGKPQPPQNCS----VRNETTSSVHISCTPGYDGGLPQT-FTLELYSASD  198 (261)
Q Consensus       128 d~g~y~C~~~~~~----~~~~~~~~~~v~~~~~p~~p~~~~----v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~  198 (261)
                      |+|.|.|.+.+..    ........+.|.. ..+.+|....    .....|..++|.|.+  .+..|.. ...|++....
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~--~g~~P~~~~v~W~~~~~~  166 (253)
T 3liz_H           90 DTAMYYCTRDPAGRAWFAYWGQGTLVTVSA-AKTTPPSVYPLAPGSAAQTNSMVTLGCLV--KGYFPEPVTVTWNSGSLS  166 (253)
T ss_dssp             GCEEEEEEECCBTTTBCCEECCCEEEEECS-SCCBCCEEEEECC------CCEEEEEEEE--EEEBSSCCEEEEGGGTBC
T ss_pred             hCEEEEEEEecCCcceeeEECCCEEEEEec-cCCCCCeEEEecCCcccCCCCcEEEEEEE--eeEeCCCeEEEEEeCCee
Confidence            9999999998752    2222222333331 3333332211    112358999999997  3434433 2333333321


Q ss_pred             cceeE--EEecC----CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        199 LNLLV--NLTNL----DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       199 ~~~~~--~~~~~----~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .....  .....    ....+.|......+ |.|  +|.|.|..+.......+.+.
T Consensus       167 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~y--tC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          167 SGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETV--TCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             TTEEECCCEEETTEEEEEEEEEEETTSTTT-SCC--EEEEEEGGGTEEEEEECCCC
T ss_pred             cceEeCCccccCCeEEEEEEEEEcHHHCCC-ceE--EEEEEECCCCcceEEEecCc
Confidence            11000  00100    11457788877778 999  99999999865555444443

>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A

Probab=99.32  E-value=5.1e-09  Score=79.44  Aligned_cols=210  Identities=10%  Similarity=0.016  Sum_probs=133.2

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCC-ceeEEEEcC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPA-RSFKWKFNN   98 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~~~~W~~~~   98 (261)
                      .++.|.++...-.-.|+..|.|..|.....  ...+...+....+............+.|.+.....+.. -.+.|...+
T Consensus        74 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s--~~~~~t~~~~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~Y~v~~~~~~  151 (290)
T 3r8q_A           74 SSVVVSGLMVATKYEVSVYALKDTLTSRPA--QGVVTTLENVSPPRRARVTDATETTITISWRTKTETITGFQVDAVPAN  151 (290)
T ss_dssp             CEEEECSCCSSCEEEEEEEEEETTEECCCE--EEEEECCCCCCCCEEEEEEEECSSCEEEEEECCSCCCCEEEEEEEESS
T ss_pred             cEEEeCCCCCCCEEEEEEEEEeCCCCCCCc--ceeEecCCCCCCCceeEEEEcCCCeEEEEEeCCCCcccEEEEEEEECC
Confidence            478888887777777777788877654222  22232211112222222333456677777766432221 134443322


Q ss_pred             CccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEee
Q psy11549         99 SGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT  178 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~  178 (261)
                      ..     .............+.+.++.....+.|...+.+..|....   ..+.....|.+|.++.+.......+.|.|.
T Consensus       152 ~~-----~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~---~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~  223 (290)
T 3r8q_A          152 GQ-----TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSP---VVIDASTAIDAPSNLRFLATTPNSLLVSWQ  223 (290)
T ss_dssp             SC-----CCEEEEECTTCSEEEECSCCTTCEEEEEEEEEETTEECCC---EEEEEECCCCCCEEEEEEEEETTEEEEEEE
T ss_pred             CC-----cceEEecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCC---EEEEecCCCCCCCccEEEeeCCCEEEEEEe
Confidence            11     1112223334457899999999989999999987665433   234444668888888888788999999999


Q ss_pred             cCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCcee
Q psy11549        179 PGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVI  243 (261)
Q Consensus       179 ~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~  243 (261)
                      ++  .+....|.+.|+..+...... .........+.|.+  |.++..|.|+|.|.|..|.+++..
T Consensus       224 ~p--~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~~~~g~s~p~~  285 (290)
T 3r8q_A          224 PP--RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITG--LEPGTEYTIYVIALKNNQKSEPLI  285 (290)
T ss_dssp             CC--SSCCCEEEEEEECTTSCCEECSSCCCTTCCEEEECS--CCTTCEEEEEEEEEETTEECCCEE
T ss_pred             CC--CCcccEEEEEEEeCCCCcceeEeccCCCccEEEECC--CCCCCEEEEEEEEEeCCCcCCccc
Confidence            73  344456999888765543222 12234567899999  999999999999999999887654

>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM related cell adhesion molecule, fibronectin type III domain, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.32  E-value=9.9e-12  Score=82.38  Aligned_cols=104  Identities=23%  Similarity=0.257  Sum_probs=77.3

Q ss_pred             EEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE---EEecCCCCcEEEcCCCCCCc
Q psy11549        148 LYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV---NLTNLDTPAFTLEDLGLDGT  223 (261)
Q Consensus       148 ~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~  223 (261)
                      .+.+.+..+|.+|.++.+.......+.|.|.++.+++.++. |.+.|+........|   ......... .|.+  |.++
T Consensus         8 ~~~~~v~~~P~~P~~~~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~w~~~~~~~~~~~~-~i~~--L~p~   84 (127)
T 1uey_A            8 PTPAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT-AQLN--LSPY   84 (127)
T ss_dssp             CCCCCCCCSCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCE-EEEC--CCTT
T ss_pred             EEEEEeecCCcCCCCcEEEEccCCEEEEEEECCCCCCCCceEEEEEEEECCCCCCccEEEeeeCCCceE-EEec--CCCC
Confidence            34466678999999999988889999999998777777765 999988754322233   112223333 5778  9999


Q ss_pred             cEEEEEEEEEcCCCcCCceeee-eeeeccccc
Q psy11549        224 VLMRVVISGVNAKGRSLPVIWD-DFSMSGAHY  254 (261)
Q Consensus       224 ~~Y~~~~~a~N~~G~~~~s~~~-~~~~~~~~~  254 (261)
                      +.|.|+|.|.|..|.+.+|... .+++....+
T Consensus        85 t~Y~frV~A~n~~G~s~~S~~~~~~~T~~~~P  116 (127)
T 1uey_A           85 VNYSFRVMAVNSIGKSLPSEASEQYLTKASEP  116 (127)
T ss_dssp             CEECCEEEEEESSCBCCCCSCCCCEECCCSSC
T ss_pred             CEEEEEEEEEeCCccCCccccccceEcCCCCC
Confidence            9999999999999999999884 555554443

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.31  E-value=1e-11  Score=89.60  Aligned_cols=160  Identities=11%  Similarity=0.037  Sum_probs=88.5

Q ss_pred             eeCCCcEEEEEEEeeCC---CCceeEEEEcCCccccccCCceEEeCC----ceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         71 ASRSESVDIHCAVEADP---PARSFKWKFNNSGETLDVGSERFSSGS----RGSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      +..|+.++|.|.+.+.+   .+..+.|++++................    ..+.|.|.++..+|+|.|+|.+.+..+..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            56899999999999874   344899999873211000000000111    12468999999999999999999987643


Q ss_pred             EeeEEEEE--EeCCCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEE--EecCCCCcE
Q psy11549        144 VTPCLYQV--VLAGKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVN--LTNLDTPAF  213 (261)
Q Consensus       144 ~~~~~~~v--~~~~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~--~~~~~~~~~  213 (261)
                      .....+.+  .+..+|   . +.+..     ..|..+.|.|.+  .+..|.. .+.|+++.........  .....+..|
T Consensus        95 ~~~~~v~~~~~~~~~P---~-v~~~~~~~~~~~g~~~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~  168 (207)
T 2vol_A           95 PIEKTISKTKGRPKAP---Q-VYTLPPPKEQMAKDKVSLTCMI--TDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSY  168 (207)
T ss_dssp             CEEEEECCCCCCCBCC---E-EEEECCCTGGGSSSEEEEEEEE--EEEBSSCCEEEEEETTEECSCEEECCCEECTTSCE
T ss_pred             ceEEEeccCCCCCcCC---e-EEEeCCCHHHhcCCceEEEEEE--eeEECCCCEEEEEECCEeccCcccCCceECCCCCE
Confidence            22112222  222222   2 11211     237899999997  4434442 3344454332211111  111222333


Q ss_pred             E------EcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        214 T------LEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       214 ~------i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      .      |......++|.|  +|.|.|....
T Consensus       169 ~~~s~l~i~~~~~~~~g~y--tC~a~n~~l~  197 (207)
T 2vol_A          169 FVYSKLNVQKSNWEAGNTF--TCSVLHEGLH  197 (207)
T ss_dssp             EEEEEEEEEHHHHSSCCEE--EEEEECTTSG
T ss_pred             EEEEEEEECHHHcCCCCEE--EEEEECCCCC
Confidence            3      333112467899  9999998754

>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A

Probab=99.31  E-value=2.6e-10  Score=82.63  Aligned_cols=131  Identities=16%  Similarity=0.103  Sum_probs=93.6

Q ss_pred             eEEEEecC-CCCcCeEEEEEEEcCCceEEe-eEEEEEEeCCCCCCCCcceEEee--cCCeEEEEeecCCCCCC-CeEEEE
Q psy11549        117 SMLRYTPV-TELDYGTLSCAAQNAIGTQVT-PCLYQVVLAGKPQPPQNCSVRNE--TTSSVHISCTPGYDGGL-PQTFTL  191 (261)
Q Consensus       117 ~~l~i~~~-~~~d~g~y~C~~~~~~~~~~~-~~~~~v~~~~~p~~p~~~~v~~~--~~~~~~l~c~~~~~~~~-p~~~~~  191 (261)
                      ..+.|.++ .....+.|++.|.|..|.... ...+......+|.+|.++.+...  ....+.|+|.++...+. ...|.+
T Consensus        62 ~~~~i~~L~~~~t~Y~~~V~A~n~~G~~~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v  141 (215)
T 1bqu_A           62 TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNI  141 (215)
T ss_dssp             TEEECSSCCCTTSCEEEEEEEEETTEEEECCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEE
T ss_pred             ceEEEcCCccccccEEEEEEEEecccCccCCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCCCCCCcceEEEEE
Confidence            46788888 788888999999999887653 11222222346888888887653  57899999997544333 456999


Q ss_pred             EEEeCCccceeEEEe-----cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCC---ceeeeeeeecc
Q psy11549        192 ELYSASDLNLLVNLT-----NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL---PVIWDDFSMSG  251 (261)
Q Consensus       192 ~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~---~s~~~~~~~~~  251 (261)
                      .|+.....  .|...     ......++|.+  |.+++.|.|+|+|.|..|.+.   +|..+.+.+..
T Consensus       142 ~y~~~~~~--~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~  205 (215)
T 1bqu_A          142 QYRTKDAS--TWSQIPPEDTASTRSSFTVQD--LKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYE  205 (215)
T ss_dssp             EEEETTCS--SCEECCGGGGCSCCSEEEECS--CCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECC
T ss_pred             EEccCCCC--CceEeccccccCccceEEeCC--CCCCCEEEEEEEEccCCCCCccCCCCCcccccccc
Confidence            99886543  23221     34567899999  999999999999999999755   55555555543

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.31  E-value=2.5e-11  Score=77.93  Aligned_cols=81  Identities=14%  Similarity=0.254  Sum_probs=57.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccc-----ccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETL-----DVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-----~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +.+..|+++.|.|.+.+.+.+ .+.|++++.....     .....++..   ......|.|.++..+|+|.|+|.+.| .
T Consensus        16 ~~v~~G~~v~L~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~   93 (108)
T 3m45_A           16 VTVVEGGTAILTCRVDQNDNT-SLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDEGQYTCSLFT-M   93 (108)
T ss_dssp             EEEETTSCEEEEEEESSCSSC-CEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-S
T ss_pred             eEEEeCCcEEEEeEEcCCCcc-EEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-C
Confidence            678899999999999998876 7999987641111     011223322   22456899999999999999999999 6


Q ss_pred             ceEEeeEEEEE
Q psy11549        141 GTQVTPCLYQV  151 (261)
Q Consensus       141 ~~~~~~~~~~v  151 (261)
                      +.......+.|
T Consensus        94 ~~~~~~~~L~V  104 (108)
T 3m45_A           94 PVKTSKAYLTV  104 (108)
T ss_dssp             SCEEEEEEEEE
T ss_pred             CCcEEEEEEEE
Confidence            66665444433

>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.31  E-value=3.1e-11  Score=78.86  Aligned_cols=98  Identities=18%  Similarity=0.109  Sum_probs=76.9

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVIS  231 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~  231 (261)
                      ...|.+|.++.+.......+.|.|.++.+++.++. |.++++..... ..| .........++|.+  |.+++.|.|+|.
T Consensus        15 ~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~v~~--L~p~t~Y~frV~   91 (118)
T 1x3d_A           15 SCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGN-GEFCQCYMGSQKQFKITK--LSPAMGCKFRLS   91 (118)
T ss_dssp             CSCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSS-SCCEEEEEESCSEEEEES--CCTTCEEEEECC
T ss_pred             CCCCcCCCCcEEeccCCCEEEEEECCCCCCCCcceEEEEEEecCCCC-CCeEEeeccCCcEEEeCC--CCCCCEEEEEEE
Confidence            35788888888888889999999998776677755 88888765442 123 22333458899999  999999999999


Q ss_pred             EEcCCCcCCceeeeeeeeccccc
Q psy11549        232 GVNAKGRSLPVIWDDFSMSGAHY  254 (261)
Q Consensus       232 a~N~~G~~~~s~~~~~~~~~~~~  254 (261)
                      |.|..|.+.+|..+.+.+....+
T Consensus        92 A~n~~G~s~~S~~~~~~T~~~~P  114 (118)
T 1x3d_A           92 ARNDYGTSGFSEEVLYYTSGCSG  114 (118)
T ss_dssp             EEESSCBCCCCCCEEEECSCCCC
T ss_pred             EEECCCCCCCccCEEEEcCCCCC
Confidence            99999999999998877665443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.30  E-value=3.3e-11  Score=74.80  Aligned_cols=73  Identities=15%  Similarity=0.217  Sum_probs=56.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +...        ....|.|.++..+|+|.|+|.+.|..|.... ..
T Consensus        13 ~~v~~G~~~~l~C~~~g~p~p-~i~W~~~~~~--~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s-~~   80 (91)
T 3bfo_A           13 QKLMPGSTLVLQCVAVGSPIP-HYQWFKNELP--LTHE--------TKKLYMVPYVDLEHQGTYWCHVYNDRDSQDS-KK   80 (91)
T ss_dssp             EEECTTSCEEEECEEECSSCC-EEEEEETTEE--CTTC--------CSSEEEESSCCGGGCEEEEEEEECSSCEEEC-CC
T ss_pred             cEecCCCcEEEEEEeccCCCC-EEEEEcCCee--CCcC--------CCCeEEECCCCHHhCEEEEEEEEcCCCCEEe-ee
Confidence            557899999999999999888 8999998642  2111        1237999999999999999999999886542 23


Q ss_pred             EEEEe
Q psy11549        149 YQVVL  153 (261)
Q Consensus       149 ~~v~~  153 (261)
                      +.+.+
T Consensus        81 ~~l~V   85 (91)
T 3bfo_A           81 VEIII   85 (91)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            44444

>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.30  E-value=2.3e-11  Score=78.48  Aligned_cols=91  Identities=22%  Similarity=0.207  Sum_probs=70.9

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecC-CCCCCCeE-EEEEEEeCCccceeEEE---ecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPG-YDGGLPQT-FTLELYSASDLNLLVNL---TNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~-~~~~~p~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      .+|.+|....+.....+.+.|.|.++ .+++.++. |.++++..+..  .|..   .......++|.+  |.+++.|.|+
T Consensus         9 ~~p~~P~~P~v~~v~~~sv~L~W~~P~~~gg~~i~~Y~Ve~~~~~~~--~w~~~~~~~~~~~~~~v~~--L~p~t~Y~fr   84 (112)
T 1bpv_A            9 SPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNG--RWLKANFSNILENEFTVSG--LTEDAAYEFR   84 (112)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSC--CCEECCCSCCCSSEEEECS--CCSSCCEEEE
T ss_pred             CCCCCCCCCEEEEeeCCEEEEEECCCCcCCCCcccEEEEEEEECCCC--ceEEeecccCccCEEEECC--CCCCCEEEEE
Confidence            46777777777778899999999954 56777754 99998876544  3321   223457899999  9999999999


Q ss_pred             EEEEcCCCc-CCceeeeeeee
Q psy11549        230 ISGVNAKGR-SLPVIWDDFSM  249 (261)
Q Consensus       230 ~~a~N~~G~-~~~s~~~~~~~  249 (261)
                      |.|.|..|. |.+|..+....
T Consensus        85 V~A~N~~G~~s~~S~~~~~~t  105 (112)
T 1bpv_A           85 VIAKNAAGAISPPSEPSDAIT  105 (112)
T ss_dssp             EEEECTTSCEEEEEEEEEEEC
T ss_pred             EEEEECCCCCCCCCCCCCCEE
Confidence            999999997 99998876554

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.30  E-value=9.8e-12  Score=92.69  Aligned_cols=164  Identities=12%  Similarity=0.109  Sum_probs=81.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc----------------cCCceEEeC----CceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD----------------VGSERFSSG----SRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~----------------~~~~~~~~~----~~~~~l~i~~~~~~  127 (261)
                      +.+..|++++|.|.+.+.+. ...+.|++...+....                ....++...    .....|.|.++..+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (257)
T 3bn9_D           10 GLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAE   89 (257)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGG
T ss_pred             EEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChh
Confidence            45789999999999987652 2379999864321110                011233322    34568999999999


Q ss_pred             cCeEEEEEEEcCCc----------e---EEeeEEEEEEeCCCCCCCCcce----EEeecCCeEEEEeecCCCCCCCeE-E
Q psy11549        128 DYGTLSCAAQNAIG----------T---QVTPCLYQVVLAGKPQPPQNCS----VRNETTSSVHISCTPGYDGGLPQT-F  189 (261)
Q Consensus       128 d~g~y~C~~~~~~~----------~---~~~~~~~~v~~~~~p~~p~~~~----v~~~~~~~~~l~c~~~~~~~~p~~-~  189 (261)
                      |+|.|.|.+.+..+          .   ......+.|.. .++.+|....    .....|..++|.|.+  .+..|.. .
T Consensus        90 DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~-~~~~~P~v~~~~p~~~~~~g~~v~L~C~~--~g~~P~pi~  166 (257)
T 3bn9_D           90 DTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSS-ASTKGPSVFPLAPSSKSTSGGTAALGCLV--KDYFPEPVT  166 (257)
T ss_dssp             GCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECS-SCCBCCEECCCCC-----------CCCEE--EEEBSSCCE
T ss_pred             hCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecC-CCCcCCcEEEecCcccccCCCcEEEEEEE--eeEECCCcE
Confidence            99999999998754          1   11222333332 1222232110    012358889999997  3433433 3


Q ss_pred             EEEEEeCCccc-eeE-EEecCCC-----CcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        190 TLELYSASDLN-LLV-NLTNLDT-----PAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       190 ~~~~~~~~~~~-~~~-~~~~~~~-----~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      +.|++...... ... .......     ..+.|..+...+ |.|  +|.|.|..+.
T Consensus       167 v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~Y--tC~v~n~~~~  219 (257)
T 3bn9_D          167 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY--ICNVNHKPSN  219 (257)
T ss_dssp             EEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CE--EEEEEEGGGT
T ss_pred             EEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeE--EEEEEecCCC
Confidence            33433332211 011 1111111     234555544446 889  9999996643

>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=2.8e-11  Score=77.85  Aligned_cols=96  Identities=9%  Similarity=-0.007  Sum_probs=74.5

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCC-ccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSAS-DLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      ..|.+|.++.+.......+.|.|.++...+.+ ..|.+.|+..+ .....+.........++|.+  |.++..|.|+|.|
T Consensus         6 ~~P~~p~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A   83 (109)
T 2e7h_A            6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRG--LKRGASYLVQVRA   83 (109)
T ss_dssp             CSSCCCCCCEEEEEETTEEEEECCCCCCSSSCCCEEEEEEEETTCCSTTTSEEEEESSSEEEEES--CCTTSCEEEEEEE
T ss_pred             CCCCCCCccEEEecCCCEEEEEeCCCCCCCCcEeEEEEEEEECCCCCCceeEEEccCCCEEEECC--CCCCCeEEEEEEE
Confidence            56778889999888999999999986544444 45999888765 22222222233457999999  9999999999999


Q ss_pred             EcCCCcCCceeeeeeeeccc
Q psy11549        233 VNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~~~~  252 (261)
                      .|..|.+.+|..+.+++...
T Consensus        84 ~n~~G~g~~S~~~~~~T~~~  103 (109)
T 2e7h_A           84 RSEAGYGPFGQEHHSQTQLD  103 (109)
T ss_dssp             ECSSCBCCCCSCEECCCCCC
T ss_pred             EeCCccCCCCCCEEEEcCCC
Confidence            99999999999988876653

>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=6.8e-11  Score=77.32  Aligned_cols=96  Identities=15%  Similarity=0.085  Sum_probs=76.7

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVIS  231 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~  231 (261)
                      ..+|.+|.++.+.......+.|.|.++.+.+.++. |.+.|+......... .........+.|.+  |.++..|.|+|.
T Consensus        15 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~   92 (119)
T 2ed7_A           15 SVLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGN--LKPEAMYTFRVV   92 (119)
T ss_dssp             SSSCCCCSCCEEEEECSSCEEEECCCCSCCSSCEEEEEEEEEESSCCCCEEEECCCTTCCEEEECS--CCSSSEEEECCE
T ss_pred             CCCCcCCcceEEEecCCCEEEEEEeCCCCCCCcEEEEEEEEEeCCCCcceeeEeecCCceEEEeCC--CCCCCEEEEEEE
Confidence            46788999999988889999999998766555654 999888765543222 22234568899999  999999999999


Q ss_pred             EEcCCCcCCceeeeeeeecc
Q psy11549        232 GVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       232 a~N~~G~~~~s~~~~~~~~~  251 (261)
                      |.|..|.+.+|..+.+.+..
T Consensus        93 A~n~~G~g~~S~~~~~~T~~  112 (119)
T 2ed7_A           93 AYNEWGPGESSQPIKVATQP  112 (119)
T ss_dssp             EEESSCBCSCCCCEEEECCC
T ss_pred             EEcCCccCCCcCCEEEEeCC
Confidence            99999999999988887653

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.30  E-value=2.2e-11  Score=78.89  Aligned_cols=100  Identities=15%  Similarity=0.203  Sum_probs=66.9

Q ss_pred             eeeEEEEEEeec-eeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCC
Q psy11549         48 SNQLKLRVKYAP-ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTE  126 (261)
Q Consensus        48 s~~~~l~V~~~p-~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~  126 (261)
                      +..+.|.|...| .+...... ..+.+|+++.|.|.+.+.  | .+.|++++.... ......+...+....|.|.++..
T Consensus         8 ~~~~~l~V~~~pp~~~~~~~~-~~v~~G~~v~l~C~~~~~--p-~v~W~k~~~~l~-~~~~~~~~~~~~~~~L~I~~v~~   82 (113)
T 2edh_A            8 RTSAMLTVRALPIKFTEGLRN-EEATEGATAVLRCELSKM--A-PVEWWKGHETLR-DGDRHSLRQDGARCELQIRGLVA   82 (113)
T ss_dssp             CCCCCCCCCCSCCCEEECCCC-CEECTTSCEEEEEEESSC--C-CCEEEESSSBCC-CSSSEEEEEETTEEEEEECSCCS
T ss_pred             cEEEEEEEEcCCCcccccCCc-eEEeCCCeEEEEEEECCC--C-cEEEEECCEECC-CCCcEEEEECCCEEEEEECCCCh
Confidence            445677787444 55544444 678899999999999764  4 699999874221 11222233344456899999999


Q ss_pred             CcCeEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549        127 LDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      +|+|.|+|.+    +....  ...+.|..+|.
T Consensus        83 ~D~G~Y~C~a----~~~~~--~~~l~V~~~p~  108 (113)
T 2edh_A           83 EDAGEYLCMC----GKERT--SAMLTVRAMPS  108 (113)
T ss_dssp             TTCEEEEEEE----TTEEE--EEEEEECCCCC
T ss_pred             hhCEEEEEEe----CCCCE--EEEEEEeCCCC
Confidence            9999999999    33444  34455555554

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.30  E-value=3.9e-11  Score=75.90  Aligned_cols=90  Identities=13%  Similarity=0.095  Sum_probs=59.7

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+.........+..|+.+.|.|.+. .|.+ .+.|++++.... ......+...+....|.|.++..+|+|.|+|.|  
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~-~v~W~k~g~~i~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            8 AAFAKILDPAYQVDKGGRVRFVVELA-DPKL-EVKWYKNGQEIR-PSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             CCEEECCCSCEEECTTEEEEEEEEES-CTTS-CEEEEESSCBCC-CBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CeEEecCCCccEEcCCCcEEEEEEec-CCCc-eEEEEECCEECC-CCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            34433333225678999999999998 5666 899999875321 122223334445567999999999999999999  


Q ss_pred             CCceEEeeEEEEEEeCCCC
Q psy11549        139 AIGTQVTPCLYQVVLAGKP  157 (261)
Q Consensus       139 ~~~~~~~~~~~~v~~~~~p  157 (261)
                        +....  ...+.|..+|
T Consensus        83 --g~~~~--~~~l~V~~~P   97 (100)
T 2yuv_A           83 --GDEKC--STELFVRSGP   97 (100)
T ss_dssp             --TTEEE--EEEEEECCSC
T ss_pred             --CCceE--EEEEEEecCC
Confidence              33444  3445555554

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.1e-11  Score=79.06  Aligned_cols=83  Identities=14%  Similarity=0.223  Sum_probs=60.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      +.+..|+++.|.|.+.+.+.+  +.|++++.... ......+...+....|.|.++..+|+|.|+|.+.|..+      .
T Consensus        20 ~~v~~G~~v~l~C~~~~~p~~--v~W~k~g~~~~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~------~   90 (104)
T 2e6p_A           20 LTFTTSERVVLTCELSRVDFP--ATWYKDGQKVE-ESELLVVKMDGRKHRLILPEAKVQDSGEFECRTEGVSA------F   90 (104)
T ss_dssp             EEEESSSCEECCEECSSTTCC--CEEEETTEECC-CBTTBEEEEETTEEEEEESSCCTTTCEEEEEECSSCCC------C
T ss_pred             EEEeCCCcEEEEEEecCCCCc--cEEeeCCEECC-CCCCEEEEeCCCEEEEEECCCChhhCEEEEEEECCceE------E
Confidence            567899999999999988876  89999874221 12222333345556899999999999999999998633      3


Q ss_pred             EEEEeCCCCCCC
Q psy11549        149 YQVVLAGKPQPP  160 (261)
Q Consensus       149 ~~v~~~~~p~~p  160 (261)
                      +.+.|..+|.+|
T Consensus        91 ~~l~V~~~P~pp  102 (104)
T 2e6p_A           91 FGVTVQDPSGPS  102 (104)
T ss_dssp             EEEEEECCCCSS
T ss_pred             EEEEEcCCCCCc
Confidence            344555666655

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.29  E-value=2.1e-11  Score=95.03  Aligned_cols=123  Identities=18%  Similarity=0.225  Sum_probs=78.0

Q ss_pred             EECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCC-cEEEEEEEeeCCCC--ceeE
Q psy11549         17 LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSE-SVDIHCAVEADPPA--RSFK   93 (261)
Q Consensus        17 ~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~-~~~l~C~~~~~~~~--~~~~   93 (261)
                      ..+.+|+|.+++.+|.|.|+|.+.+..+.. ...+.|.|..+|.+.........+..|+ .++|.|.+.+..++  ..+.
T Consensus       251 ~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~~~~~Vt  329 (401)
T 3f8u_B          251 TGNGTFWLPRVQPFQEGTYLATIHLPYLQG-QVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVE  329 (401)
T ss_dssp             EEEEEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSSTTCEEE
T ss_pred             CCcEEEEECcCCHhhCceEEEEEEecccce-eEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCCCCcEEE
Confidence            356799999999999999999998876654 5567888888877653322111134676 79999999987554  5899


Q ss_pred             EE-EcC-CccccccCC-----ceEEeCCc----eeEEEEecCCC-CcCeEEEEEEEcCC
Q psy11549         94 WK-FNN-SGETLDVGS-----ERFSSGSR----GSMLRYTPVTE-LDYGTLSCAAQNAI  140 (261)
Q Consensus        94 W~-~~~-~~~~~~~~~-----~~~~~~~~----~~~l~i~~~~~-~d~g~y~C~~~~~~  140 (261)
                      |. +++ .+.......     ......+.    .+.|.+..... ++.+.|+|.+.+..
T Consensus       330 W~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s  388 (401)
T 3f8u_B          330 WELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS  388 (401)
T ss_dssp             EEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred             EEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence            95 765 222221111     01111111    22344444332 24459999999875

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.29  E-value=5.5e-11  Score=75.06  Aligned_cols=83  Identities=16%  Similarity=0.280  Sum_probs=62.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      +.+..|+.+.|.|.+.+.| | .+.|++++..  +.. ..++....  ..|.|.++..+|+|.|+|.|.|..|....  .
T Consensus        13 ~~v~~G~~v~L~C~~~g~p-p-~i~W~k~g~~--~~~-~~~~~~~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~--~   83 (99)
T 2cr3_A           13 FLVHPGDLLQLRCRLRDDV-Q-SINWLRDGVQ--LAE-SNRTRITG--EEVEVQDSVPADSGLYACVTSSPSGSDTT--Y   83 (99)
T ss_dssp             CCBCTTSCEEEECCCCSSC-C-EEEEEESSSB--CCC-CSSEEECS--SEEEETTCCTTTCEEEEEEEEETTEEEEE--E
T ss_pred             eEEeCCCcEEEEEEecCCC-C-eEEEEECCEE--CCC-CCcEEEEC--CEEEEccCCHHHCEEEEEEEEeCCceEEE--E
Confidence            5677999999999999875 5 8999998743  222 22333332  37999999999999999999999887655  6


Q ss_pred             EEEEeCCCCCCC
Q psy11549        149 YQVVLAGKPQPP  160 (261)
Q Consensus       149 ~~v~~~~~p~~p  160 (261)
                      +.+.|...|..+
T Consensus        84 ~~l~V~~~~~s~   95 (99)
T 2cr3_A           84 FSVNVSDALPSG   95 (99)
T ss_dssp             EEECBCSCCSCC
T ss_pred             EEEEEecCCCCc
Confidence            667776666544

>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.29  E-value=2.4e-11  Score=79.82  Aligned_cols=103  Identities=14%  Similarity=0.216  Sum_probs=78.0

Q ss_pred             EEEEeCCCCCCCCcc--eEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCcc
Q psy11549        149 YQVVLAGKPQPPQNC--SVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTV  224 (261)
Q Consensus       149 ~~v~~~~~p~~p~~~--~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~  224 (261)
                      ..+.+..+|.+|.++  .+.......+.|.|.++.+++.++. |.++++......... .........++|.+  |.+++
T Consensus        10 ~~l~v~~~P~~P~~~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~v~~--L~p~t   87 (121)
T 1wf5_A           10 AHLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKG--LVPAR   87 (121)
T ss_dssp             CCSSCCCCCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEES--CCTTC
T ss_pred             EEEEEeeCCccCCCcceeeEeccCCEEEEEEcCCCCCCCcceEEEEEEEcCCCCceEeEcccCCCccEEEECC--cCCCC
Confidence            345566889999998  7777778999999998777777766 999988765221111 12234567899999  99999


Q ss_pred             EEEEEEEEEcCCCcCCceeeee-eeecccc
Q psy11549        225 LMRVVISGVNAKGRSLPVIWDD-FSMSGAH  253 (261)
Q Consensus       225 ~Y~~~~~a~N~~G~~~~s~~~~-~~~~~~~  253 (261)
                      .|.|+|.|.|..|.+.+|.... +.++...
T Consensus        88 ~Y~frV~A~n~~G~s~~S~~~~~~~t~~~~  117 (121)
T 1wf5_A           88 SYQFRLCAVNDVGKGQFSKDTERVSLPESG  117 (121)
T ss_dssp             EEEEEEEEEESSCEEEECCCCSCEECCCCS
T ss_pred             EEEEEEEEEcCCccCCCcCCcceeEcCCCC
Confidence            9999999999999999998863 5555433

>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A

Probab=99.28  E-value=1.1e-09  Score=80.44  Aligned_cols=136  Identities=12%  Similarity=0.052  Sum_probs=98.3

Q ss_pred             eeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE-eCCCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEE
Q psy11549        116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV-LAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLEL  193 (261)
Q Consensus       116 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~-~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~  193 (261)
                      ...+.+.++.....+.|+..|.|..|....+..+.+. ....|.+|.++.+.......+.|.|.++...+.+ ..|.+.|
T Consensus        57 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~~T~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~  136 (234)
T 3f7q_A           57 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCY  136 (234)
T ss_dssp             SSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCCCCCCEEEECSSSCEEEECCCCSCCSSCCCEEEEEE
T ss_pred             ccEEEECCCCCCCEEEEEEEEEeCCCcCCCCCeEEEEcCCCCCCCCCccEEEEecCCEEEEEEcCCCCCCCceeEEEEEE
Confidence            3468899999999999999999987765443233332 3356778888888888899999999976544444 4599988


Q ss_pred             EeCCcccee---E---EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCcee-eeeeeecccc
Q psy11549        194 YSASDLNLL---V---NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVI-WDDFSMSGAH  253 (261)
Q Consensus       194 ~~~~~~~~~---~---~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~-~~~~~~~~~~  253 (261)
                      +........   +   .........++|.+  |.+++.|.|+|.|.|..|.+.+|. .+.+++....
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~  201 (234)
T 3f7q_A          137 GLVNDDNRPIGPMKKVLVDNPKNRMLLIEN--LRESQPYRYTVKARNGAGWGPEREAIINLATQPKR  201 (234)
T ss_dssp             EEBCTTSCBSSCCEECCCSCTTCCEEEEEC--CCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCC
T ss_pred             EECCCCCCccCcceEEEecCCcceEEEeCC--CCCCCeEEEEEEEECCCccCCCcCceeEeecCCCC
Confidence            864433211   1   12223446899999  999999999999999999999987 4666554433

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.28  E-value=1.2e-11  Score=90.04  Aligned_cols=162  Identities=12%  Similarity=0.041  Sum_probs=88.3

Q ss_pred             eeCCCcEEEEEEEeeCC---CCceeEEEEcCCccccccCCceE--EeCC----ceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         71 ASRSESVDIHCAVEADP---PARSFKWKFNNSGETLDVGSERF--SSGS----RGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~~~~~~~~~~~--~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +..|+.++|.|.+.+.+   +...+.|++++..  +.......  ....    ..+.|.|.++..+|.|.|+|.+.+..+
T Consensus        23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~--~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~g~Y~C~~~~~~~  100 (218)
T 2rgs_A           23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVE--VHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKDL  100 (218)
T ss_dssp             HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEE--ECCCEEEEEEETTTTEEEEEEEEECCHHHHHTTCCEEEEEEETTC
T ss_pred             hccCCCeeEEEEEcCCccCCCceEEEEEECCcc--ccCcccccccccCCCeEEEEEEEEEcHHHcCCCCeEEEEEECCcC
Confidence            56899999999999874   3348999998732  11110000  0011    134699999999999999999999765


Q ss_pred             eEEeeEEEEEEeCCCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE--EEecCCCCcE
Q psy11549        142 TQVTPCLYQVVLAGKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV--NLTNLDTPAF  213 (261)
Q Consensus       142 ~~~~~~~~~v~~~~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~--~~~~~~~~~~  213 (261)
                      .......+.. +.....+|. +.+..     ..|..++|.|.+  .+..|.. .+.|+++........  ......+..+
T Consensus       101 ~~~~~~~v~~-~~~~~~~P~-v~~~~~~~~~~~g~~~~L~C~~--~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~  176 (218)
T 2rgs_A          101 PSPIERTISK-IKGLVRAPQ-VYILPPPAEQLSRKDVSLTCLV--VGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSY  176 (218)
T ss_dssp             SSCEEEEECC-CCCCCBCCE-EEEECCCGGGTTSSEEEEEEEE--EEEBSSCCEEEEEETTEEECCEEECCCEECTTSCE
T ss_pred             CCcceEEEee-cCCCCCCCE-EEEECCChHHhcCCceEEEEEE--EeeeCCCcEEEEEECCEeccCceecccEECCCCCE
Confidence            4311112211 111122232 12211     237899999997  4434532 334444433221111  1111222333


Q ss_pred             EEc------CCCCCCccEEEEEEEEEcCCCcCC
Q psy11549        214 TLE------DLGLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       214 ~i~------~~~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      .+.      .....++|.|  +|.|.|......
T Consensus       177 ~~~s~l~v~~~~~~d~g~Y--tC~a~n~~l~~~  207 (218)
T 2rgs_A          177 FIYSKLNMKTSKWEKTDSF--SCNVRHEGLKNY  207 (218)
T ss_dssp             EEEEEEEEEHHHHHHCSCE--EEEEECTTSGGG
T ss_pred             EEEEEEEECHHHcCCCCeE--EEEEEcCCCCCc
Confidence            332      2111247899  999999886543

>1x5x_A Fibronectin type-III domain containing protein 3A; structural genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.28  E-value=4.8e-11  Score=76.79  Aligned_cols=96  Identities=13%  Similarity=0.147  Sum_probs=71.8

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCC-C-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGL-P-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~-p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      .+|.+|....+.......+.|.|.++.+.+. + ..|.++++..................++|.+  |.+++.|.|+|.|
T Consensus         6 ~~P~~P~~p~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~v~~--L~p~t~Y~frV~A   83 (109)
T 1x5x_A            6 SGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKN--LRRSTKYKFKVIA   83 (109)
T ss_dssp             CCCCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEES--CCSSCEEEEEEEE
T ss_pred             CCCcCCCCCEEEEccCCEEEEEEcCCCCCCCCcccEEEEEEecCCCCcceEEeEeCCccEEEECC--CCCCCEEEEEEEE
Confidence            4566777777777889999999997655443 5 5599998776543111122233468899999  9999999999999


Q ss_pred             EcCCCcCCceeeeeeeeccc
Q psy11549        233 VNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~~~~  252 (261)
                      .|..|.+.+|..+.+.+...
T Consensus        84 ~n~~G~s~~S~~~~~~T~~~  103 (109)
T 1x5x_A           84 YNSEGKSNPSEVVEFTTCPD  103 (109)
T ss_dssp             ECSSCEEEECCCEEEECCCC
T ss_pred             EeCCCCcCCccCEEeEeCCC
Confidence            99999999998887766543

>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW- type protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1e-10  Score=75.37  Aligned_cols=95  Identities=21%  Similarity=0.260  Sum_probs=73.1

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCC-CCCCCeE-EEEEEEeCCccceeEEE---ecCCCCcEEEcCCCCCCccEEEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGY-DGGLPQT-FTLELYSASDLNLLVNL---TNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~-~~~~p~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      ..+|.+|.++.+.......+.|.|.++. +++.++. |.++++.....  .|..   .......++|.+  |.++..|.|
T Consensus         5 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g~~~i~~Y~v~~~~~~~~--~w~~~~~~~~~~~~~~v~~--L~p~t~Y~f   80 (110)
T 2yuw_A            5 SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTE--DWIVANKDLIDKTKFTITG--LPTDAKIFV   80 (110)
T ss_dssp             CCCSCCCEEEEEEEECSSCEEEEEECCSSCCSSCEEEEEEEEEETTCS--SEEECCSSCCCSSEEEECS--CCTTCEEEE
T ss_pred             CCCCCCCCccEEEeccCCeEEEEECCCCCCCCCCccEEEEEEEECCCc--cceEeccccCccCEEEECC--CCCCCEEEE
Confidence            3678889888888888999999999764 4556654 99998876554  3322   123567899999  999999999


Q ss_pred             EEEEEcCCCcCCceeeee-eeeccc
Q psy11549        229 VISGVNAKGRSLPVIWDD-FSMSGA  252 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~-~~~~~~  252 (261)
                      +|.|.|..|.+.+|.... ++.+..
T Consensus        81 rV~A~n~~G~s~~S~~~~~v~~~~~  105 (110)
T 2yuw_A           81 RVKAVNAAGASEPKYYSQPILVKES  105 (110)
T ss_dssp             EEEEEETTEECCCEECSSCEECCCC
T ss_pred             EEEEEcCCcCCCCcCCCCCEEecCC
Confidence            999999999999998764 444433

>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.28  E-value=2.6e-11  Score=79.94  Aligned_cols=97  Identities=22%  Similarity=0.260  Sum_probs=74.0

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCC-ccceeE-EE--e--cCCCCcEEEcCCCCCCccEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSAS-DLNLLV-NL--T--NLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~-~~~~~~-~~--~--~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      ..+|.+|.++.+.......+.|.|.++.+++.++. |.++|+... .....| ..  .  ......++|.+  |.+++.|
T Consensus        15 ~~~P~~P~~l~~~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~~~~w~~~~~~~~~~~~~~~~v~~--L~p~t~Y   92 (124)
T 1wis_A           15 PELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPD--LNPFTCY   92 (124)
T ss_dssp             CCCCCCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECS--CCTTSEE
T ss_pred             CCCCccCCCCEEEEecCCEEEEEEECCCCCCCcccEEEEEEEECCCCCCCCCeEeeeEccCCCceEEEeCC--CCCCCEE
Confidence            46788999998888889999999998888777754 999888731 111123 11  1  24568899999  9999999


Q ss_pred             EEEEEEEcCCCcCCceeeee-eeeccc
Q psy11549        227 RVVISGVNAKGRSLPVIWDD-FSMSGA  252 (261)
Q Consensus       227 ~~~~~a~N~~G~~~~s~~~~-~~~~~~  252 (261)
                      .|+|.|.|..|.+.+|.... +++...
T Consensus        93 ~frV~A~N~~G~s~~S~~~~~~~T~~~  119 (124)
T 1wis_A           93 SFRMRQVNIVGTSPPSQPSRKIQTLQS  119 (124)
T ss_dssp             CCCCEEECSSCBCCCCCCCCCEECCCS
T ss_pred             EEEEEEEECCccCCCcCCccceEcCCC
Confidence            99999999999999998653 544433

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.27  E-value=2.3e-11  Score=77.84  Aligned_cols=77  Identities=17%  Similarity=0.088  Sum_probs=56.1

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+...... +.+..|+.+.|.|.+.+.+.+  +.|++++.... ......+...+....|.|.++..+|+|.|+|.+.|
T Consensus         9 p~~~~~~~~-~~v~~G~~v~l~C~~~~~~~~--v~W~k~g~~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            9 LEVLQDIAD-LTVKAAEQAVFKCEVSDEKVT--GKWYKNGVEVR-PSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCEEECCCC-EEEESSCCEECCCEESCSSCE--EEEEESSCBCC-CCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CEEecCCCC-eEEeCCCeEEEEEEEcCCCcc--eEEEcCCEECc-CCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence            333333333 678899999999999987654  99999875322 12223334445556899999999999999999999


Q ss_pred             C
Q psy11549        139 A  139 (261)
Q Consensus       139 ~  139 (261)
                      .
T Consensus        85 ~   85 (106)
T 2dlt_A           85 Y   85 (106)
T ss_dssp             S
T ss_pred             C
Confidence            7

>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.27  E-value=5.2e-11  Score=76.98  Aligned_cols=99  Identities=11%  Similarity=0.034  Sum_probs=76.1

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCC-CCe----EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGG-LPQ----TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~-~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      .+|.+|.++++.......+.|+|.++...+ ...    .|.+.|+........+.........++|.+  |++++.|+|+
T Consensus         7 ~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~g--L~P~T~Y~f~   84 (113)
T 1x5j_A            7 GPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTG--LKPNTLYEFS   84 (113)
T ss_dssp             CCCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEES--CCTTCEECCE
T ss_pred             CCCCCCcceEEEEecCCEEEEEecCCCCccccccCcCceEEEEEEECCCCCeEEEEEecCcCEEEeCC--CCCCcEEEEE
Confidence            577899999998889999999999754322 223    699988763222222233334567899999  9999999999


Q ss_pred             EEEEcCCCcCCceeeeeeeeccc-ccC
Q psy11549        230 ISGVNAKGRSLPVIWDDFSMSGA-HYA  255 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~~~~~~~-~~~  255 (261)
                      |.|.|..|.|.+|..+.+++... .+.
T Consensus        85 V~A~~~~G~g~~S~~v~~~T~~~~~Ps  111 (113)
T 1x5j_A           85 VMVTKGRRSSTWSMTAHGTTFELSGPS  111 (113)
T ss_dssp             EEEECSSCBCCCCCCCCEECCCSSCCC
T ss_pred             EEEecCCccCCCcccEEeeccCCCCCC
Confidence            99999999999999999888766 554

>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain, structural genomics., NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.7e-11  Score=80.39  Aligned_cols=98  Identities=16%  Similarity=0.194  Sum_probs=75.4

Q ss_pred             EEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCC-CCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccE
Q psy11549        148 LYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYD-GGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVL  225 (261)
Q Consensus       148 ~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~-~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~  225 (261)
                      .+.+.+..+|.+|.++.+.......+.|.|.++.. ++.++. |.++++..................++|.+  |.++..
T Consensus         9 ~~~v~~~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~w~~~~~~~~~~~~~v~~--L~p~t~   86 (120)
T 2yux_A            9 SIDIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITE--LVIGNE   86 (120)
T ss_dssp             CCCCCCCCCCCCCSCEEEEEEETTEEEEEECCCSCCCSSCCCCCCEEEEETTTCCCEEEESSCCSSCCEECC--CCSSEE
T ss_pred             EEEEEeecCCCcCCCCEEEEecCCEEEEEEcCCCcCCCCCceEEEEEEEECCCCceEEeeecCCcCEEEECC--CCCCCE
Confidence            44566678999999998888889999999998654 446654 99988876544211111234567899999  999999


Q ss_pred             EEEEEEEEcCCCcCCceeeeee
Q psy11549        226 MRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       226 Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      |.|+|.|.|..|.+++|.....
T Consensus        87 Y~frV~A~n~~G~s~~S~~s~~  108 (120)
T 2yux_A           87 YYFRVFSENMCGLSEDATMTKE  108 (120)
T ss_dssp             EEEEECCCSSSCSCSSCEECSS
T ss_pred             EEEEEEEeeCCcCCCCccCcCC
Confidence            9999999999999999986543

>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A

Probab=99.27  E-value=3e-09  Score=76.94  Aligned_cols=134  Identities=7%  Similarity=-0.005  Sum_probs=97.3

Q ss_pred             eeEEEEecCCCCcCeEEEEEEEcCCceEEeeE---EEEEEe---CCCCCCCCcceEEeecCCeEEEEeecCC-CCCCC-e
Q psy11549        116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPC---LYQVVL---AGKPQPPQNCSVRNETTSSVHISCTPGY-DGGLP-Q  187 (261)
Q Consensus       116 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~---~~~v~~---~~~p~~p~~~~v~~~~~~~~~l~c~~~~-~~~~p-~  187 (261)
                      ...+.+.++.....+.|++.|.|..|....+.   .+.+..   ..+|.+|.++.+.......+.|.|.++. ..+.+ .
T Consensus        69 ~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~  148 (214)
T 2ibg_A           69 SFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLIT  148 (214)
T ss_dssp             EEEEEECSCCTTCEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCC
T ss_pred             ceeEEecCCcCCCEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCCccCCCCcc
Confidence            44678999999999999999998877543321   122221   1244567777777777889999999854 23344 4


Q ss_pred             EEEEEEEeCCc-cceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeecc
Q psy11549        188 TFTLELYSASD-LNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       188 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~  251 (261)
                      .|.+.|+..+. ..... .........++|.+  |.+++.|.|+|.|.|..|.|.+|..+.+++..
T Consensus       149 ~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~  212 (214)
T 2ibg_A          149 GYYAYYRPSSSAGEYFKATIEGAHARSFKIAP--LETATMYEFKLQSFSAASASEFSALKQGRTQR  212 (214)
T ss_dssp             EEEEEEEETTCCSCCEEEEEECTTCCEEEECS--CCTTCEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred             eEEEEEEECCCCcceEEeeccCCcceEEEeCC--CCCCCEEEEEEEEEcCCccCCCcceEeeEecC
Confidence            59999887665 22122 33333457899999  99999999999999999999999999887764

>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A

Probab=99.26  E-value=2.2e-09  Score=81.45  Aligned_cols=219  Identities=8%  Similarity=0.025  Sum_probs=126.5

Q ss_pred             EccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece-eecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCcc
Q psy11549         24 LQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI-CKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWKFNNSGE  101 (261)
Q Consensus        24 i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~  101 (261)
                      +..+...-.-.+++.|.|..|.....  .+.+..... ...+............+.|.+.....+. .-.+.|...+...
T Consensus        65 ~~~l~p~t~Y~~~V~A~n~~G~s~~s--~~~~~~~~~~~~~p~~~~~~~~~~~si~l~W~~p~~~i~~Y~v~~~~~~~~~  142 (290)
T 3l5i_A           65 LTVNLTNDRYLATLTVRNLVGKSDAA--VLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKA  142 (290)
T ss_dssp             EEEEECSSCEEEEEEEEESSCBCCCE--EEEECCTTCCCCCCCEEEEEEEETTEEEEEEECCSSCCCEEEEEEEEECSSS
T ss_pred             EEEEcCCceEEEEEEEEcCCCCCCCc--eEEeecccccCCCccceeEEEeCCCeEEEEEeCCCCCCCcEEEEEEECCCCC
Confidence            33444444445566778887765222  333322100 1111111111222457777776543321 1145665443211


Q ss_pred             ccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEE-EeCCCCCCCCcceEEeecCCeEEEEeecC
Q psy11549        102 TLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV-VLAGKPQPPQNCSVRNETTSSVHISCTPG  180 (261)
Q Consensus       102 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v-~~~~~p~~p~~~~v~~~~~~~~~l~c~~~  180 (261)
                      .. ..............+.+.++.....+.|...|.|..|..... .+.+ .....|..|..+.+.......+.|+|.++
T Consensus       143 ~~-~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~~-~~~~~t~~~~P~~~p~~~~~~~~~~sv~l~W~~~  220 (290)
T 3l5i_A          143 PC-ITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE-SIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQL  220 (290)
T ss_dssp             CC-CCEEEEEETTCSEEECCSCCCTTCEEEEEEEEEETTEECCCE-EEEEESSCCCCSSCCCEEEEEECSSCEEEEECCC
T ss_pred             CC-CcCeEEccCCCcceEEecCcCCccEEEEEEEEEeCCcccccE-EEEeEccccCCCCCCeeeEeeccCCEEEEEEcCC
Confidence            10 001111223334467778999988999999999987755432 2222 23344554446677777899999999942


Q ss_pred             --CCCCCC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        181 --YDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       181 --~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                        ...+.+ ..|.+.|+....... ..........++|.+  |.++..|.|+|.|.|..| +..|..+.++++
T Consensus       221 ~~~~~~g~i~~Y~v~~~~~~~~~~-~~~~~~~~~~~~~~~--L~p~t~Y~~~V~A~n~~G-g~~s~~~~~~T~  289 (290)
T 3l5i_A          221 PVDVQNGFIRNYTIFYRTIIGNET-AVNVDSSHTEYTLSS--LTSDTLYMVRMAAYTDEG-GKDGPEFTFTTP  289 (290)
T ss_dssp             CHHHHSSCCCEEEEEEEETTSCCE-EEEEETTCSEEEECS--CCTTCEEEEEEEEEETTE-EEECCCEEEECC
T ss_pred             ChhccCCEEEEEEEEEEeCCCCeE-EEEeCCCceEEEeCC--CCCCCEEEEEEEEEeCCC-CCCCCceEeecC
Confidence              222334 459999887654432 223345568999999  999999999999999999 777777777654

>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.26  E-value=5.7e-11  Score=77.47  Aligned_cols=100  Identities=25%  Similarity=0.360  Sum_probs=76.6

Q ss_pred             EeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccEEEE
Q psy11549        152 VLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       152 ~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      .+..+|.+|.++.+.......+.|.|.++.+++.++ .|.+.|+..... ..|  .........++|.+  |.+++.|.|
T Consensus        11 ~~~~~P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~i~~--L~p~t~Y~f   87 (117)
T 1uem_A           11 DLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVS-NSWQTVANHVKTTLYTVRG--LRPNTIYLF   87 (117)
T ss_dssp             CSCCSCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTE-EEEEEEEEEECSSEEEECS--CCTTCEEEE
T ss_pred             CCCCCccCCCCCEEEEecCCEEEEEEeCCCCCCcCceEEEEEEEECCCC-CceeEcccccCcCEEEECC--CCCCCEEEE
Confidence            345788899999988888999999999866666664 499988876422 133  11233568899999  999999999


Q ss_pred             EEEEEcCCCcCCceeeee-eeeccccc
Q psy11549        229 VISGVNAKGRSLPVIWDD-FSMSGAHY  254 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~-~~~~~~~~  254 (261)
                      +|.|.|..|.+.+|.... +++..+.+
T Consensus        88 rV~A~n~~G~s~~S~~~~~v~t~~~~P  114 (117)
T 1uem_A           88 MVRAINPQGLSDPSPMSDPVRTQDSGP  114 (117)
T ss_dssp             EEEEEETTEEEEECCCCCCEECCCSSC
T ss_pred             EEEEECCCccCCCcCCCccEEccCCCC
Confidence            999999999998888876 66554443

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.26  E-value=2.1e-11  Score=96.16  Aligned_cols=120  Identities=13%  Similarity=0.121  Sum_probs=75.8

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEE--EEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKL--RVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWK   95 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l--~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~   95 (261)
                      .+|.|..++.+|+|.|+|.+.+..+.. ....+.+  .+..+|.+...... .....|+.++|.|.+.+..+ ..++.|+
T Consensus       233 s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~-~~~~~g~~~~L~C~~~g~~P~~i~v~W~  311 (376)
T 2aty_A          233 SELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPP-KEQMAKDKVSLTCMITDFFPEDITVEWQ  311 (376)
T ss_pred             EEEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCC-HHHhcCCceEEEEEEEEeECCCcEEEEE
Confidence            379999999999999999998886643 1222222  34456655433322 22335889999999998644 4589999


Q ss_pred             EcCCccccccCCceEE-eCCc----eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         96 FNNSGETLDVGSERFS-SGSR----GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        96 ~~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +++.... ........ ..+.    .+.|.|.....+|.|.|+|.|.+..-
T Consensus       312 k~g~~~~-~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          312 WNGQPAE-NYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             ECCEECC-CeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            9874321 10111111 1111    23466666666678999999998643

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.26  E-value=4.6e-11  Score=88.18  Aligned_cols=172  Identities=14%  Similarity=0.147  Sum_probs=93.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCC---CceeEEEEcCCccccc----c-----------------CCceEEe----CCceeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPP---ARSFKWKFNNSGETLD----V-----------------GSERFSS----GSRGSMLR  120 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~----~-----------------~~~~~~~----~~~~~~l~  120 (261)
                      +.+.+|++++|.|.+.+.+.   ...+.|++...+....    .                 ...++..    ......|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   89 (239)
T 3tv3_H           10 TLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLK   89 (239)
T ss_dssp             SEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEE
T ss_pred             EEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEE
Confidence            45779999999999987542   3379999853221110    0                 0123322    23455799


Q ss_pred             EecCCCCcCeEEEEEEEcCCc-----------eEEeeEEEEEEeC-CCCCCCCcceE----EeecCCeEEEEeecCCCCC
Q psy11549        121 YTPVTELDYGTLSCAAQNAIG-----------TQVTPCLYQVVLA-GKPQPPQNCSV----RNETTSSVHISCTPGYDGG  184 (261)
Q Consensus       121 i~~~~~~d~g~y~C~~~~~~~-----------~~~~~~~~~v~~~-~~p~~p~~~~v----~~~~~~~~~l~c~~~~~~~  184 (261)
                      |.++..+|+|.|.|.+.+..+           .........+.+. .++.+|.....    ....+..+.|.|.+  .+.
T Consensus        90 I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~--~~~  167 (239)
T 3tv3_H           90 LNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV--KDY  167 (239)
T ss_dssp             ECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEE--EEE
T ss_pred             ECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEE--eeE
Confidence            999999999999999986421           1111111223332 23333322111    11348999999997  343


Q ss_pred             CCeEE-EEEEEeCCccceeE--EEecCCC-----CcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeee
Q psy11549        185 LPQTF-TLELYSASDLNLLV--NLTNLDT-----PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWD  245 (261)
Q Consensus       185 ~p~~~-~~~~~~~~~~~~~~--~~~~~~~-----~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~  245 (261)
                      .|... ..|++.........  .......     ..++|......+ +.|  +|.+.|..+.......+
T Consensus       168 ~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~y--tC~v~h~~~~~~~~~~l  233 (239)
T 3tv3_H          168 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY--ICNVNHKPSNTKVDKRV  233 (239)
T ss_dssp             BSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCC--EEEEEEGGGTEEEEEEC
T ss_pred             eCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEE--EEEEEECCCCceEEEEe
Confidence            45332 33433332111111  1111111     245666655566 889  99999988765444433

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.26  E-value=7.5e-11  Score=76.05  Aligned_cols=90  Identities=17%  Similarity=0.298  Sum_probs=60.1

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCC----ceEEeC-----CceeEEEEecCCC
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGS----ERFSSG-----SRGSMLRYTPVTE  126 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~----~~~~~~-----~~~~~l~i~~~~~  126 (261)
                      .+|.+...+.. ..+..|++++|.|.+.+.+. +..+.|++++..  +....    .++...     .....|.|.++..
T Consensus         9 ~~P~i~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   85 (112)
T 3so5_A            9 PXPQITVQPET-QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEA--LQDAEMENYAHLRAQGGELMEYTTILRLRNVEF   85 (112)
T ss_dssp             CSCEEEECCCC-EEECTTCCEEEEEEEEESCCCCCEEEEEETTEE--CTTCEEEEEEETTGGGSSCEEEEEEEEECSCCG
T ss_pred             CCCeEEeCCCC-cEEECCCCEEEEEEEecCCCCCEEEEEccCCcc--cccccccceeeeeccCCCccccceEEEEecccc
Confidence            34555544443 57889999999999997643 338999998742  21111    011111     0135899999999


Q ss_pred             CcCeEEEEEEEcCCceE-EeeEEE
Q psy11549        127 LDYGTLSCAAQNAIGTQ-VTPCLY  149 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~~~-~~~~~~  149 (261)
                      +|+|.|+|.|.|..|.. .....+
T Consensus        86 ~D~G~Y~C~a~n~~g~~~s~~~~l  109 (112)
T 3so5_A           86 TSEGXYQCVISNHFGSSYSVXAXL  109 (112)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEE
T ss_pred             ccCCeEEEEEEeCCCcEEEeEEEE
Confidence            99999999999998874 343333

>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A

Probab=99.26  E-value=1.8e-09  Score=77.98  Aligned_cols=135  Identities=10%  Similarity=0.079  Sum_probs=97.6

Q ss_pred             eeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEE-eCCCCC-CCCcceEEee--cCCeEEEEeecCCCCCCC-eEEE
Q psy11549        116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV-LAGKPQ-PPQNCSVRNE--TTSSVHISCTPGYDGGLP-QTFT  190 (261)
Q Consensus       116 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~-~~~~p~-~p~~~~v~~~--~~~~~~l~c~~~~~~~~p-~~~~  190 (261)
                      ...+.+.++.....+.|++.|.|..|....+..+.+. ....|. +|.++.+...  ....+.|.|.++...+.+ ..|.
T Consensus        63 ~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p~~~~g~i~~Y~  142 (211)
T 3p4l_A           63 TLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYI  142 (211)
T ss_dssp             SSEEEECSCCTTCEEEEEEEEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECCTTCCSCCCEEE
T ss_pred             ceEEEecCcCCCCEEEEEEEEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCCCCCCCCEEEEE
Confidence            3478899999999999999999987765433233332 223444 8888887765  367999999976544444 5599


Q ss_pred             EEEEeCCccce---eEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeeccc
Q psy11549        191 LELYSASDLNL---LVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       191 ~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~  252 (261)
                      +.|+.......   ...........++|.+  |.+++.|.|+|.|.|..|.|.+|..+.+.....
T Consensus       143 v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~~~  205 (211)
T 3p4l_A          143 IYYSTDVNAEIHDWVIEPVVGNRLTHQIQE--LTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKA  205 (211)
T ss_dssp             EEEESCTTSCGGGSEEEEEESSCSEEEECC--CCTTCEEEEEEEEEETTEECCCCCCEEEECC--
T ss_pred             EEEEECCCCCCCceEEEEecCCeeEEEEcC--CCCCCEEEEEEEEEcCCccCCCCCCEEccCccc
Confidence            98886544321   1123344568899999  999999999999999999999999998876644

>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.25  E-value=9.3e-11  Score=76.81  Aligned_cols=96  Identities=11%  Similarity=0.043  Sum_probs=75.1

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCC-CCCCC-eEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGY-DGGLP-QTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~-~~~~p-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      ..+|.+|.++.+.......+.|.|.++. +.+.+ ..|.+.|+......... .........++|.+  |.+++.|.|+|
T Consensus        15 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V   92 (120)
T 1x5f_A           15 GPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQN--LMPATVYIFRV   92 (120)
T ss_dssp             CCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECS--CCTTCEEEEEE
T ss_pred             CCCCCCCCCcEEEecCCCEEEEEECCCCCCCCCcEEEEEEEEEECCCCCceEEEeccCCccEEEeCC--CCCCCEEEEEE
Confidence            4678889999888888889999999865 44444 55999988765442222 23334568999999  99999999999


Q ss_pred             EEEcCCCcCCceeeeeeeecc
Q psy11549        231 SGVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~~~~~  251 (261)
                      .|.|..|.+.+|..+.+++..
T Consensus        93 ~A~n~~G~g~~S~~~~~~T~~  113 (120)
T 1x5f_A           93 MAQNKHGSGESSAPLRVETQP  113 (120)
T ss_dssp             EEECSSCEEEECCCEEEECCC
T ss_pred             EEECCCccCCCCCCEEEEeCC
Confidence            999999999999988887743

>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=8.5e-11  Score=75.19  Aligned_cols=95  Identities=17%  Similarity=0.125  Sum_probs=74.2

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      ..|.+|.++.+.......+.|+|.++...+.+ ..|.+.|+......  +.........+.|.+  |.+++.|.|+|.|.
T Consensus         6 ~~P~~P~~l~~~~~~~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~   81 (106)
T 2ed8_A            6 SGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGK--EQNIEVDGLSYKLEG--LKKFTEYSLRFLAY   81 (106)
T ss_dssp             CCCCCCEEEEEECSSTTEEEEEEECCSSCSSCCCEEEEEEEETTTCC--EEEEEECSSCEEEES--CCTTCEEEEEEEEE
T ss_pred             CCCcCCceeEEEecCCCEEEEEECCCCCCCCCeeEEEEEEEECCCCc--eEEEeCCccEEEECC--CCCCCEEEEEEEEE
Confidence            56788999988888899999999986444334 55999988765542  211222358999999  99999999999999


Q ss_pred             cCCCcCCceeeeeeeecccc
Q psy11549        234 NAKGRSLPVIWDDFSMSGAH  253 (261)
Q Consensus       234 N~~G~~~~s~~~~~~~~~~~  253 (261)
                      |..|.+.+|..+.+++....
T Consensus        82 n~~G~g~~S~~~~~~T~~~~  101 (106)
T 2ed8_A           82 NRYGPGVSTDDITVVTLSDS  101 (106)
T ss_dssp             CSSCEEEECCCEEEECCCCC
T ss_pred             eCCccCCCcCCEEEEcCCCC
Confidence            99999999998888765443

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.25  E-value=1.5e-10  Score=84.82  Aligned_cols=171  Identities=11%  Similarity=0.116  Sum_probs=94.7

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc-c---------------CCceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD-V---------------GSERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~-~---------------~~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +.+.+|++++|.|.+.+.. ....+.|++...+.... +               ...++..    ......|.|.++..+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   89 (230)
T 3n9g_H           10 EVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSE   89 (230)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChh
Confidence            5678999999999997632 22379999743221110 0               0123322    224557999999999


Q ss_pred             cCeEEEEEEEcCC-----c-e--EEeeEEEEEEeCCCCCCCCcceEE----eecCCeEEEEeecCCCCCCC--eEEEEEE
Q psy11549        128 DYGTLSCAAQNAI-----G-T--QVTPCLYQVVLAGKPQPPQNCSVR----NETTSSVHISCTPGYDGGLP--QTFTLEL  193 (261)
Q Consensus       128 d~g~y~C~~~~~~-----~-~--~~~~~~~~v~~~~~p~~p~~~~v~----~~~~~~~~l~c~~~~~~~~p--~~~~~~~  193 (261)
                      |+|.|.|.+.+..     + .  ......+.|.. .++.+|....+.    ...|..++|.|.+  .+..|  +.+.|  
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~v~~~~~~~~~~~g~~v~L~C~~--~~~~P~~~~v~W--  164 (230)
T 3n9g_H           90 DTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSS-ASTKGPSVFPLAPSSKSTSGGTAALGCLV--KDYFPEPVTVSW--  164 (230)
T ss_dssp             GCEEEEEEEECCCSSSTTCCEEEECCCEEEEECS-SCCBCCEEEEECCCCCCCTTCEEEEEEEE--EEEBSSCCEEEE--
T ss_pred             hCEEEEEEEccCCCCcccccccccCCCEEEEEEe-cCCCCCEEEecCCCccccCCCCEEEEEEE--EeEECCCEEEEE--
Confidence            9999999998753     1 1  11222333322 222233211111    1358999999997  33334  23333  


Q ss_pred             EeCCccceeE---EEecCCC------CcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        194 YSASDLNLLV---NLTNLDT------PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       194 ~~~~~~~~~~---~~~~~~~------~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                       +........   .......      ..+.|......+ +.|  +|.+.|..+.......+.+.
T Consensus       165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~y--tC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY--ICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCC--EEEEEEGGGTEEEEEECCCC
T ss_pred             -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeE--EEEEEECCCCcceEEEccCC
Confidence             322111001   0011111      256777766667 899  99999988765544444443

>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.8e-10  Score=75.21  Aligned_cols=98  Identities=15%  Similarity=0.077  Sum_probs=74.0

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      ...|.+|.++.+.......+.|.|.++...+.-..|.+.|+......... .........++|.+  |.++..|.|+|.|
T Consensus        15 ~~~P~~P~~l~~~~~~~~sv~l~W~~p~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A   92 (118)
T 2yrz_A           15 AGVPDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVED--LLPNHSYVFRVRA   92 (118)
T ss_dssp             CSCCCCCCCCEECCCBTTEEEEECCCCCCSSCEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEES--CCTTCEEEEEEEE
T ss_pred             CCCCCCCCceEEEeCCCCEEEEEeCCCCCCCCccEEEEEEEECCCCceEEEEcCCCCcCEEEeCC--CCCCCEEEEEEEE
Confidence            35778888888888889999999998655542345999998765543222 33334568999999  9999999999999


Q ss_pred             EcCCCcCCcee-eeeeeecccc
Q psy11549        233 VNAKGRSLPVI-WDDFSMSGAH  253 (261)
Q Consensus       233 ~N~~G~~~~s~-~~~~~~~~~~  253 (261)
                      .|..|.+.+|. .+.+......
T Consensus        93 ~n~~G~g~~S~~~~~~~t~~~~  114 (118)
T 2yrz_A           93 QSQEGWGREREGVITIESQVSG  114 (118)
T ss_dssp             EESSCEEEEEEEEEECCCSCCC
T ss_pred             EcCCcCCCCcCCceEeCCCCCC
Confidence            99999999988 5555544433

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.25  E-value=2.2e-11  Score=79.43  Aligned_cols=86  Identities=21%  Similarity=0.348  Sum_probs=58.4

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCC---ceEEeCCceeEEEEe-----cCCCCc
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS---ERFSSGSRGSMLRYT-----PVTELD  128 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~-----~~~~~d  128 (261)
                      .+|.+...+.. ..+..|+.+.|.|.+.+.|.| .+.|++++.........   ........  .+.+.     ++..+|
T Consensus         8 ~pP~i~~~p~~-~~v~~G~~v~L~C~~~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~~~D   83 (117)
T 2v9t_A            8 FPPRIVEHPSD-LIVSKGEPATLNCKAEGRPTP-TIEWYKGGERVETDKDDPRSHRMLLPSG--SLFFLRIVHGRKSRPD   83 (117)
T ss_dssp             EEEEEEECCCC-EEECTTCCEEECCEEEEESCC-EEEEEETTEECCCTTTCSSCSEEECTTS--CEEESSCCCBTTBCSS
T ss_pred             CCCeeEcCCCC-EEEcCCCcEEEEEECCccCCC-eEEEEECCEeccccCCCCcceeEEecCC--cEEEEEEEeCCCCcCc
Confidence            56666655444 678899999999999999988 79999987432211111   11122222  22222     557899


Q ss_pred             CeEEEEEEEcCCceEEee
Q psy11549        129 YGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus       129 ~g~y~C~~~~~~~~~~~~  146 (261)
                      +|.|+|.|.|..|.....
T Consensus        84 ~G~Y~C~a~N~~G~~~s~  101 (117)
T 2v9t_A           84 EGVYVCVARNYLGEAVSH  101 (117)
T ss_dssp             CEEEEEEEEETTEEEECC
T ss_pred             CEEEEEEEEeCccceEee
Confidence            999999999999987653

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.25  E-value=3.8e-10  Score=83.94  Aligned_cols=165  Identities=13%  Similarity=0.086  Sum_probs=91.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--------------cCCceEEeC---CceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--------------VGSERFSSG---SRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~~~~~~---~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+..|++++|.|.+.. +.+ .+.|++...+....              ....++...   .....|.|.++..+|+|.
T Consensus        13 v~v~~G~~v~L~C~~~~-~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~   90 (252)
T 1oga_E           13 LFRKEGQNVTLSCEQNL-NHD-AMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF   90 (252)
T ss_dssp             EEEETTCCEEECCEECS-CCS-EEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred             EEEcCCCcEEEEEEeCC-CCC-EEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEE
Confidence            67889999999999853 344 89999864321110              012344332   234579999999999999


Q ss_pred             EEEEEEcCC---ceEEeeEEEEEEeC-CCCCCCCcceEEe------ecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccc
Q psy11549        132 LSCAAQNAI---GTQVTPCLYQVVLA-GKPQPPQNCSVRN------ETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLN  200 (261)
Q Consensus       132 y~C~~~~~~---~~~~~~~~~~v~~~-~~p~~p~~~~v~~------~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~  200 (261)
                      |.|.+.+..   ........+.|... ..+.+|. +.+..      ..|..++|.|.+  .+..|. ..+.|+++.....
T Consensus        91 Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~-v~~~~~~~~~~~~g~~~~L~C~~--~g~~P~~~~v~W~~~g~~l~  167 (252)
T 1oga_E           91 YLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPE-VAVFEPSEAEISHTQKATLVCLA--TGFYPDHVELSWWVNGKEVH  167 (252)
T ss_dssp             EEEEEESSTTSCCEECCCEEEEEESCGGGCBCCE-EEEECCCHHHHHHHSEEEEEEEE--EEEBSSCEEEEEEETTEEEC
T ss_pred             EEEEEecCCccceeECCCEEEEEecccCCCCCCe-EEEECCChhhhccCCceEEEEEE--eeEcCCCcEEEEEECCEECC
Confidence            999999851   11122223444321 1122332 22221      147899999997  444453 3344444432211


Q ss_pred             eeEEEe--------cCCCCc------EEEcCCCC-CCccEEEEEEEEEcCCCcCC
Q psy11549        201 LLVNLT--------NLDTPA------FTLEDLGL-DGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       201 ~~~~~~--------~~~~~~------~~i~~~~l-~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      ......        ......      +.|..... .+++.|  +|.+.|..+...
T Consensus       168 ~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~y--tC~v~~~~l~~~  220 (252)
T 1oga_E          168 SGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHF--RCQVQFYGLSEN  220 (252)
T ss_dssp             SSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEE--EEEEEECCBCTT
T ss_pred             CCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEE--EEEEEcCCCCCC
Confidence            111110        012222      44544112 256789  999999876544

>2crz_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.25  E-value=5.4e-11  Score=76.68  Aligned_cols=98  Identities=14%  Similarity=0.128  Sum_probs=73.8

Q ss_pred             CCCCCCCCcceE-EeecCCeEEEEeecC-CCCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        154 AGKPQPPQNCSV-RNETTSSVHISCTPG-YDGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       154 ~~~p~~p~~~~v-~~~~~~~~~l~c~~~-~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      ..+|.+|..+.+ .......+.|.|.++ .+++.++ .|.++++........ .........++|.+  |.++..|.|+|
T Consensus         6 ~~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~v~~--L~p~t~Y~frV   82 (110)
T 2crz_A            6 SGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPR-EVYQGSEVECTVSS--LLPGKTYSFRL   82 (110)
T ss_dssp             CCCCCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCE-EEEEESCSEEEEES--CCTTCEEEECC
T ss_pred             CCCCCCCCCceeccccCCCEEEEEeCCCCCCCCceeEEEEEEEEeCCCCceE-EEEeCCcEEEEECC--cCCCCEEEEEE
Confidence            367888888887 445678999999754 4556664 599998865444211 22234568899999  99999999999


Q ss_pred             EEEcCCCcCCceeeeeeeeccccc
Q psy11549        231 SGVNAKGRSLPVIWDDFSMSGAHY  254 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~~~~~~~~  254 (261)
                      .|.|..|.+.+|..+.+.+....+
T Consensus        83 ~A~n~~G~g~~S~~~~~~T~~~~P  106 (110)
T 2crz_A           83 RAANKMGFGPFSEKCDITTAPGSG  106 (110)
T ss_dssp             EEECSSCBCCCCCCEEEECCCSCC
T ss_pred             EEEcCCccCCCCCccccccCCCCC
Confidence            999999999999988887665443

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.25  E-value=1.3e-10  Score=76.30  Aligned_cols=87  Identities=23%  Similarity=0.350  Sum_probs=59.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCcccc----ccCCceEEeC---CceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETL----DVGSERFSSG---SRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~----~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +.+..|+++.|.|.+.+.|. +..+.|++++.....    ......+...   ...+.|.|.++..+|+|.|+|.|.|..
T Consensus        18 v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~   97 (122)
T 3s35_X           18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGL   97 (122)
T ss_dssp             EEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCC
Confidence            56778999999999998543 238999987752110    0111111111   134579999999999999999999999


Q ss_pred             ceEEeeEEEEEEeCCCC
Q psy11549        141 GTQVTPCLYQVVLAGKP  157 (261)
Q Consensus       141 ~~~~~~~~~~v~~~~~p  157 (261)
                      |.......  +.|..+|
T Consensus        98 g~~~~~~~--l~V~~~p  112 (122)
T 3s35_X           98 MTKKNSTF--VRVHEKP  112 (122)
T ss_dssp             CEEEEEEE--EEEEEEE
T ss_pred             CceEEEEE--EEEeccC
Confidence            88776444  4444444

>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.24  E-value=1.3e-10  Score=76.15  Aligned_cols=98  Identities=18%  Similarity=0.168  Sum_probs=74.6

Q ss_pred             CCCCCCCCcceEE-eecCCeEEEEeecCCCC-CCC-eEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        154 AGKPQPPQNCSVR-NETTSSVHISCTPGYDG-GLP-QTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       154 ~~~p~~p~~~~v~-~~~~~~~~l~c~~~~~~-~~p-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      ...|.+|..+.+. ......+.|.|.++.+. +.+ ..|.++++...... .| .........++|.+  |.+++.|.|+
T Consensus        15 ~~~P~~P~~~~~~~~~~~~sv~l~W~~p~~~gg~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~v~~--L~p~t~Y~fr   91 (120)
T 2crm_A           15 PDKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGN-KWEMIYSGATREHLCDR--LNPGCFYRLR   91 (120)
T ss_dssp             CCCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSC-CCEEEECSSCSEEEECS--CCTTSCEEEE
T ss_pred             CCCCCCCCCCEEeeccCCCEEEEEECCCCcCCCCeeeEEEEEEccCCCCc-CCEEEEeccccEEEECC--CCCCCEEEEE
Confidence            4667788777776 56788999999976544 555 45999988765421 23 33334568899999  9999999999


Q ss_pred             EEEEcCCCcCCceeeeeeeeccccc
Q psy11549        230 ISGVNAKGRSLPVIWDDFSMSGAHY  254 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~~~~~~~~~  254 (261)
                      |.|.|..|.+.+|..+.+++....+
T Consensus        92 V~A~n~~G~s~~S~~~~~~T~~~~p  116 (120)
T 2crm_A           92 VYCISDGGQSAVSESLLVQTPAVSG  116 (120)
T ss_dssp             EEEEETTEECCCCCCCCCCCCCCSC
T ss_pred             EEEEcCCccCCCcccEEEEcCCCCC
Confidence            9999999999999988887765443

>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1

Probab=99.24  E-value=4.3e-11  Score=77.24  Aligned_cols=96  Identities=8%  Similarity=-0.036  Sum_probs=74.9

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      ..|.+|.++.+.......+.|.|.++...+.+ ..|.++|+..+.....+.........+.|.+  |.++..|.|+|.|.
T Consensus         9 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~   86 (111)
T 1x5l_A            9 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSG--LKPGTRYVFQVRAR   86 (111)
T ss_dssp             CCCCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECS--CCTTCEEEECEEEE
T ss_pred             CCCCCCceEEEEEcCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCceeEEEecCCCCEEEEcC--CCCCCEEEEEEEEE
Confidence            56778888877777889999999976554444 5699998876533323333344568899999  99999999999999


Q ss_pred             cCCCcCCceeeeeeeeccc
Q psy11549        234 NAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       234 N~~G~~~~s~~~~~~~~~~  252 (261)
                      |..|.+.+|..+.+++...
T Consensus        87 n~~G~g~~S~~~~~~T~~~  105 (111)
T 1x5l_A           87 TSAGCGRFSQAMEVETGKP  105 (111)
T ss_dssp             ETTEECCCCCCEEEECCCT
T ss_pred             eCCcCCCCcccEEEEcCCC
Confidence            9999999999998877644

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=7e-12  Score=78.78  Aligned_cols=75  Identities=19%  Similarity=0.324  Sum_probs=57.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.|.+ .+.|++++..  +...        ....|.|.++..+|+|.|+|.+.|..+....+..
T Consensus        20 ~~v~~G~~v~l~C~~~g~p~~-~v~W~k~~~~--~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~   88 (96)
T 2ens_A           20 GAVAPGGTVTLTCEVPAQPSP-QIHWMKDGVP--LPLP--------PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRA   88 (96)
T ss_dssp             SEECTTCEEEEECCCSSCSSC-CCCCEESSSB--CSSC--------CCSEEEEESCCTTTCEEEECEECCSSCCCEECCC
T ss_pred             CEEcCCCeEEEEEEEccCCCC-EEEEEECCEE--CcCC--------CCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEE
Confidence            346799999999999998887 8999997742  2111        1347999999999999999999997655444445


Q ss_pred             EEEEeC
Q psy11549        149 YQVVLA  154 (261)
Q Consensus       149 ~~v~~~  154 (261)
                      +.|.+.
T Consensus        89 ~~v~V~   94 (96)
T 2ens_A           89 VSISII   94 (96)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            666554

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=6.3e-12  Score=81.81  Aligned_cols=95  Identities=16%  Similarity=0.172  Sum_probs=64.0

Q ss_pred             eEEEEEEeec-eeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCC-ceEE-eCCceeEEEEecCCC
Q psy11549         50 QLKLRVKYAP-ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ERFS-SGSRGSMLRYTPVTE  126 (261)
Q Consensus        50 ~~~l~V~~~p-~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~-~~~~~~~l~i~~~~~  126 (261)
                      .+.|.|..+| .+...... +.+.+|+.+.|.|.+.+.|.| .+.|++++..  +.... ..+. ..+....|.|.++..
T Consensus         4 ~a~l~V~~~p~~~~~~~~~-~~v~~G~~v~l~C~~~g~p~p-~v~W~k~g~~--l~~~~~~~~~~~~~~~~~L~I~~v~~   79 (115)
T 2cr6_A            4 GSSGLVQGRRVHIIEDLED-VDVQEGSSATFRCRISPANYE-PVHWFLDKTP--LHANELNEIDAQPGGYHVLTLRQLAL   79 (115)
T ss_dssp             CCCCCCCSSCCEEEECCCE-EEEETTSCEECCCEEESTTCC-SCEEEESSCE--ECCSSSCCBCCBTTTBCCBEECSCCT
T ss_pred             cEEEEEcCCCCeEeccCcc-EEEeCCCcEEEEEEEcCCCCC-ccEEEECCEE--CCCCCcEEEEEcCCCEEEEEEcCCCh
Confidence            3456666555 34444443 778899999999999998887 7999998742  22211 1222 124455799999999


Q ss_pred             CcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549        127 LDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus       127 ~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      +|+|.|+|.+    |.....+.+.|.
T Consensus        80 ~D~G~Y~C~~----g~~~~~~~L~V~  101 (115)
T 2cr6_A           80 KDSGTIYFEA----GDQRASAALRVT  101 (115)
T ss_dssp             TTCEEEEEEE----TTEECCEEEEEE
T ss_pred             hhCEEEEEEE----CCeeEEEEEEEE
Confidence            9999999993    344444444444

>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.2.1

Probab=99.24  E-value=2.5e-11  Score=78.98  Aligned_cols=98  Identities=10%  Similarity=-0.025  Sum_probs=70.7

Q ss_pred             EEeCCCCCCCCcceEEeecCCeEEEEeecCCCCC----CC--eEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCc
Q psy11549        151 VVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGG----LP--QTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGT  223 (261)
Q Consensus       151 v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~----~p--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~  223 (261)
                      +.+..+|.+|....+.....+.++|.|.++.+++    .+  ..|.++.......  .| .........++|.+  |.++
T Consensus        10 ~~~~~pp~~P~~p~v~~vt~~Sv~LsW~~p~~~g~~~g~~~I~~Y~ve~~~~~~~--~~~~v~~~~~t~~~v~g--L~p~   85 (120)
T 1wfu_A           10 PHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMH--SYGVIYTGYATRHVVEG--LEPR   85 (120)
T ss_dssp             CTTCCCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTC--CEEEEEEESCSEEEEES--CCTT
T ss_pred             EEeeCCCCCCCCceeceEECCEEEEEECCCccCCccCCCCceEEEEEEEecCCCC--ceEEEecCCccEEEECC--CCCC
Confidence            3444556655555555567999999999876543    44  3599984432333  34 33333457899999  9999


Q ss_pred             cEEEEEEEEEcCCCcCCceeeeeeeeccc
Q psy11549        224 VLMRVVISGVNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       224 ~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~  252 (261)
                      +.|.|+|.|.|..|.+.+|..+.+++...
T Consensus        86 t~Y~frV~A~n~~G~s~~S~~~~~~T~~~  114 (120)
T 1wfu_A           86 TLYKFRLKVTSPSGEYEYSPVVSVATTRE  114 (120)
T ss_dssp             CEEEEEEEEECSSSCEEECCCEEEECCCC
T ss_pred             CEEEEEEEEECCCCCCCCCccEeeEcCCC
Confidence            99999999999999999999988877643

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.24  E-value=8.1e-11  Score=87.60  Aligned_cols=162  Identities=12%  Similarity=0.091  Sum_probs=87.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc----cC----------Cc-eEEe--CCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD----VG----------SE-RFSS--GSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~----------~~-~~~~--~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+..|++++|.|.+.+.+.+ .+.|++...+....    ..          .. ++..  ..... |.|.++..+|+|.
T Consensus        11 v~v~~G~~v~L~C~~~~~~~~-~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~DsG~   88 (253)
T 3to4_D           11 RLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQGRT   88 (253)
T ss_dssp             EEEESSCCEEEEEECSCTTCC-CEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSCEE
T ss_pred             EEEeCCCcEEEEEEeCCCCcc-eEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhCeE
Confidence            668899999999998877766 79999732211110    00          00 3322  11222 9999999999999


Q ss_pred             EEEEEEcCCc------eEEeeEEEEEEeCC-CCCCCCcceEEe------ecCCeEEEEeecCCCCCCCeE-EEEEEEeCC
Q psy11549        132 LSCAAQNAIG------TQVTPCLYQVVLAG-KPQPPQNCSVRN------ETTSSVHISCTPGYDGGLPQT-FTLELYSAS  197 (261)
Q Consensus       132 y~C~~~~~~~------~~~~~~~~~v~~~~-~p~~p~~~~v~~------~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~  197 (261)
                      |+|.+.+..+      .......+.+.... .+.+|.. .+..      ..+..++|.|.+  .+..|.. .+.|+++..
T Consensus        89 Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v-~~~~~~~~~~~~g~~~~L~C~~--~g~~P~~i~v~W~k~g~  165 (253)
T 3to4_D           89 LYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEV-AVFEPSEAEISHTQKATLVCLA--TGFYPDHVELSWWVNGK  165 (253)
T ss_dssp             EEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEE-EEEECCHHHHHHHSEEEEEEEE--EEEBSSCEEEEEEETTE
T ss_pred             EEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeE-EEeCCChhhcccCCceEEEEEE--ceEECCcEEEEEEECCE
Confidence            9999986543      11122234443211 2233332 2221      125899999997  4434533 334444322


Q ss_pred             ccceeEEEec--------CCCC------cEEEcCCCCCC-ccEEEEEEEEEcCCC
Q psy11549        198 DLNLLVNLTN--------LDTP------AFTLEDLGLDG-TVLMRVVISGVNAKG  237 (261)
Q Consensus       198 ~~~~~~~~~~--------~~~~------~~~i~~~~l~~-~~~Y~~~~~a~N~~G  237 (261)
                      ..........        ....      .+.|......+ ++.|  +|.+.|..-
T Consensus       166 ~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~y--tC~v~h~~l  218 (253)
T 3to4_D          166 EVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHF--RCQVQFYGL  218 (253)
T ss_dssp             EECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEE--EEEEEECCB
T ss_pred             ECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEE--EEEEEeCCC
Confidence            2111111000        0122      34444422334 6789  888888754

>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}

Probab=99.24  E-value=1.1e-10  Score=74.92  Aligned_cols=95  Identities=12%  Similarity=0.080  Sum_probs=73.7

Q ss_pred             CCCCCCCcceEEe--ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEE
Q psy11549        155 GKPQPPQNCSVRN--ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVIS  231 (261)
Q Consensus       155 ~~p~~p~~~~v~~--~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~  231 (261)
                      ..|.+|.++.+..  .....+.|.|.++...+.++. |.+.|+.....  .|.........++|.+  |.+++.|.|+|.
T Consensus         6 ~~P~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~l~~--L~p~t~Y~~~V~   81 (108)
T 2dm4_A            6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSK--MWASQRAASNFTEIKN--LLVNTLYTVRVA   81 (108)
T ss_dssp             CCTTSCEEEEEECCTTCSSCEEEEEECCSCCSSCEEEEEEEEEETTCS--CCEEEEESSSEEEECS--CCSSCEEEEEEE
T ss_pred             CCCcCCcCeEEEEeccCCCEEEEEEcCCCCCCCcEEEEEEEEEECCCC--CeEEecCCccEEEeCC--CCCCCEEEEEEE
Confidence            5677888887765  468899999998665555554 99998876554  2322223457999999  999999999999


Q ss_pred             EEcCCCcCCceeeeeeeecccc
Q psy11549        232 GVNAKGRSLPVIWDDFSMSGAH  253 (261)
Q Consensus       232 a~N~~G~~~~s~~~~~~~~~~~  253 (261)
                      |.|..|.+.+|..+.+++....
T Consensus        82 A~n~~G~g~~S~~~~~~T~~~~  103 (108)
T 2dm4_A           82 AVTSRGIGNWSDSKSITTIKGS  103 (108)
T ss_dssp             EEESSCEEEECCCEEEECCSCS
T ss_pred             EECCCceeCCCCCEEEECCCCC
Confidence            9999999999999988875443

>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1

Probab=99.24  E-value=3.2e-09  Score=76.28  Aligned_cols=130  Identities=13%  Similarity=0.024  Sum_probs=93.6

Q ss_pred             EEEEecCCCCcCeEEEEEEEcCCceEEee---EEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCC--C-CCCCeEEEE
Q psy11549        118 MLRYTPVTELDYGTLSCAAQNAIGTQVTP---CLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGY--D-GGLPQTFTL  191 (261)
Q Consensus       118 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~---~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~--~-~~~p~~~~~  191 (261)
                      .+.+ ++.....+.|+..|.|..|....+   ..+......++.+|.++.+.......+.|+|.++.  . ++.-..|.+
T Consensus        64 ~~~~-~L~p~t~Y~~~V~A~n~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v  142 (205)
T 1cfb_A           64 SFVV-QMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYV  142 (205)
T ss_dssp             EEEE-ECCSSEEEEEEEEEEETTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEE
T ss_pred             EEEE-eCCCCCEEEEEEEEEECCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEE
Confidence            4555 888888888889999987765432   23333333444678888888878899999999764  3 334456999


Q ss_pred             EEEeCCccc-eeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCC-ceeeeeeeec
Q psy11549        192 ELYSASDLN-LLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSL-PVIWDDFSMS  250 (261)
Q Consensus       192 ~~~~~~~~~-~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~-~s~~~~~~~~  250 (261)
                      .|+..+... ... .........+.|.+  |.++..|.|+|.|.|..|.|. .|..+.+++.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~  202 (205)
T 1cfb_A          143 SWKRDIPAAAWENNNIFDWRQNNIVIAD--QPTFVKYLIKVVAINDRGESNVAAEEVVGYSG  202 (205)
T ss_dssp             EEEESSTTCCCEEEEECCTTCCEEEECS--CCSSCEEEEEEEEEETTEECSSCCCCEEEESS
T ss_pred             EEEECCCCCCcEEEEecCCCccEEEEcC--CCCCcEEEEEEEEEcCCCcCCCCCCcEEEecC
Confidence            988766542 111 22222468899999  999999999999999999999 4777777654

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.23  E-value=1.3e-10  Score=83.84  Aligned_cols=117  Identities=13%  Similarity=0.141  Sum_probs=69.8

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC---------cc-eeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC-
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG---------EA-TSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP-   88 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~---------~~-~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-   88 (261)
                      .+|.|.+++.+|+|.|.|.+.+..+         .. ....+.|.|...+.....+.  +.+..+ .+.|.|.+.+.++ 
T Consensus        71 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~--v~~~~~-~~~l~C~~~g~~P~  147 (207)
T 1ypz_E           71 STLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPS--VFIMKN-GTNVACLVKDFYPK  147 (207)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCE--EEEEEE-TTEEEEEEEEESSS
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCCe--EEEeCC-CCeEEEEEeeEeCC
Confidence            3899999999999999999987642         11 12345788864322221221  122222 3799999997654 


Q ss_pred             CceeEEEEcCCccccccCCceEEeCCceeEEEEecCCC-CcCeEEEEEEEcCCceE
Q psy11549         89 ARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTE-LDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        89 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~  143 (261)
                      +..+.|+++ ..  +............ ..+.+..... ++.|.|+|.+.+..+..
T Consensus       148 ~~~v~W~~~-~~--l~~~~~~~~~~~~-g~y~~~~~~~~~~~~~ytC~v~~~~~~~  199 (207)
T 1ypz_E          148 EVTISLRSS-KK--IVEFDPAIVISPS-GKYSAVKLGQYGDSNSVTCSVQHNSETV  199 (207)
T ss_dssp             CCEEEEECS-SE--EEECCCEEEECTT-SSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred             CeEEEEecC-Cc--ccCCccceEEcCC-CcEEEEEeecccCCCcEEEEEEECCccE
Confidence            348999987 42  2111122211111 1234434444 67899999999987543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.23  E-value=2.5e-10  Score=84.16  Aligned_cols=122  Identities=15%  Similarity=0.171  Sum_probs=71.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--------------cCCceEEe---CCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--------------VGSERFSS---GSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~~~~~---~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+..|+.++|.|.+.. +.+ .+.|++...+....              ....++..   ......|.|.++..+|+|.
T Consensus         9 v~v~~G~~v~L~C~~~~-~~~-~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~   86 (238)
T 1bec_A            9 KVAVTGGKVTLSCQQTN-NHN-NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSV   86 (238)
T ss_dssp             EEEETTCCEEEEEEESS-CCS-EEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEE
T ss_pred             eEEeCCCcEEEEEEeCC-CCc-eEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEE
Confidence            66889999999999853 444 89999865321110              01123322   2345689999999999999


Q ss_pred             EEEEEEcCCc---e--EEeeEEEEEEeCC-CCCCCCcceEEe------ecCCeEEEEeecCCCCCCCe-EEEEEEEe
Q psy11549        132 LSCAAQNAIG---T--QVTPCLYQVVLAG-KPQPPQNCSVRN------ETTSSVHISCTPGYDGGLPQ-TFTLELYS  195 (261)
Q Consensus       132 y~C~~~~~~~---~--~~~~~~~~v~~~~-~p~~p~~~~v~~------~~~~~~~l~c~~~~~~~~p~-~~~~~~~~  195 (261)
                      |.|.+.+..+   .  ......+.|.... .+.+|. +.+..      ..|..++|.|.+  .+..|. ..+.|+++
T Consensus        87 Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~-v~~~~~~~~~~~~g~~~~L~C~~--~g~~P~~~~v~W~~~  160 (238)
T 1bec_A           87 YFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPK-VSLFEPSKAEIANKQKATLVCLA--RGFFPDHVELSWWVN  160 (238)
T ss_dssp             EEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCE-EEEECCCSTTCSSSCSCSEEEEE--EEEBSCCEEEEEEET
T ss_pred             EEEEEecCCCCccccccCCCEEEEEeccCCCCCCCc-eEEECCChHHcccCCceEEEEEE--eeEeCCCcEEEEEEC
Confidence            9999998632   1  1122234443311 112332 12211      248899999997  444343 23344443

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.4e-11  Score=78.17  Aligned_cols=76  Identities=16%  Similarity=0.186  Sum_probs=56.1

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC----CceEEeCCceeEEEEecCCCCcCeEEEE
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG----SERFSSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      |.+...... ..+..|+.+.|.|.+.+.+ + .+.|++++..... ..    ...+...+....|.|.++..+|+|.|+|
T Consensus         9 ~~~~~~~~~-~~v~~G~~v~l~C~~~~~~-~-~v~W~k~g~~i~~-~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   84 (101)
T 2edk_A            9 VLIVTPLED-QQVFVGDRVEMAVEVSEEG-A-QVMWMKNGVELTR-EDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQV   84 (101)
T ss_dssp             CCEEECCCC-EEEESSCCCBCCEEESCSS-C-CCEEEESSCBCCC-SCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEE
T ss_pred             CEEEecCCc-eEEcCCCCEEEEEEEeCCC-C-EEEEEECCEECCC-CCCcceeEEEEECCCEEEEEECCCChhhCEEEEE
Confidence            334433333 6788999999999999887 5 8999998753221 12    2234445556689999999999999999


Q ss_pred             EEEc
Q psy11549        135 AAQN  138 (261)
Q Consensus       135 ~~~~  138 (261)
                      .+.|
T Consensus        85 ~a~n   88 (101)
T 2edk_A           85 ITNG   88 (101)
T ss_dssp             ECSS
T ss_pred             EEcC
Confidence            9987

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.23  E-value=1.4e-12  Score=94.64  Aligned_cols=122  Identities=14%  Similarity=0.103  Sum_probs=71.8

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE---EEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR---VKYAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKW   94 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~---V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W   94 (261)
                      ..+|.|.+++.+|+|.|+|.+.+..+.. .....|.   +..+|.+.........+..|+.+.|.|.+.+.++ +..+.|
T Consensus        65 ~~~L~I~~~~~~D~g~Y~C~~~~~~~~~-~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W  143 (214)
T 1ow0_A           65 SSVLPGCAEPWNHGKTFTCTAAYPESKT-PLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRW  143 (214)
T ss_dssp             EEECTTTHHHHHHTCEEEEEECCSSCSS-CEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEE
T ss_pred             EEEEEEeHHHcCCCCeEEEEEecCCCCC-ceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEE
Confidence            3479999999999999999999887643 2222332   2345544321111012457889999999998644 458999


Q ss_pred             EEcCCcccccc-CCceEEeC----Cc----eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         95 KFNNSGETLDV-GSERFSSG----SR----GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~~~----~~----~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ++++....... ........    +.    .+.|.+.....++.|.|+|.|.|...
T Consensus       144 ~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l  199 (214)
T 1ow0_A          144 LQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL  199 (214)
T ss_dssp             EETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred             EECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence            99874321110 00011111    21    12333443333458999999999653

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.23  E-value=5.6e-11  Score=87.27  Aligned_cols=172  Identities=11%  Similarity=0.134  Sum_probs=91.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-Ccee--EEEEcCCccccc-c-----------------CCceEEe----CCceeEEEEec
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSF--KWKFNNSGETLD-V-----------------GSERFSS----GSRGSMLRYTP  123 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~--~W~~~~~~~~~~-~-----------------~~~~~~~----~~~~~~l~i~~  123 (261)
                      +.+..|++++|.|.+.+.+. ...+  .|++...+.... +                 ...++..    ......|.|.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   89 (232)
T 3qhz_H           10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTN   89 (232)
T ss_dssp             SEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             EEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECc
Confidence            44679999999999976432 1145  999743221110 0                 0123322    23455799999


Q ss_pred             CCCCcCeEEEEEEEcCC--------ceEEeeEEEEEEeCCCCCCCCcceE----EeecCCeEEEEeecCCCCCCCeE-EE
Q psy11549        124 VTELDYGTLSCAAQNAI--------GTQVTPCLYQVVLAGKPQPPQNCSV----RNETTSSVHISCTPGYDGGLPQT-FT  190 (261)
Q Consensus       124 ~~~~d~g~y~C~~~~~~--------~~~~~~~~~~v~~~~~p~~p~~~~v----~~~~~~~~~l~c~~~~~~~~p~~-~~  190 (261)
                      +..+|+|.|.|.+.+..        ........+.+.. .++.+|.....    ....|..++|.|.+  .+..|.. ..
T Consensus        90 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~v~~~~~~~~~~~g~~v~L~C~~--~~~~P~~~~v  166 (232)
T 3qhz_H           90 MDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSS-ASTKGPSVFPLAPSSKSTSGGTAALGCLV--KDYFPEPVTV  166 (232)
T ss_dssp             CCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECS-SCCBCCEEEEECC-------CEEEEEEEE--EEEBSSCCEE
T ss_pred             CChhhCEEEEEEEeeccCccccccceeeCCCeEEEEec-CCCCCCEEEEecccccccCCCcEEEEEEE--eeEeCCCeEE
Confidence            99999999999999753        1122222333332 23333322111    12348999999997  3434433 22


Q ss_pred             EEEEeCCccceeE--EEecCCC-----CcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeee
Q psy11549        191 LELYSASDLNLLV--NLTNLDT-----PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       191 ~~~~~~~~~~~~~--~~~~~~~-----~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~  246 (261)
                      .|++.........  .......     ..+.|......+ +.|  +|.|.|..+.......+.
T Consensus       167 ~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~y--tC~v~~~~~~~~~~~~l~  226 (232)
T 3qhz_H          167 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY--ICNVNHKPSNTKVDKRVE  226 (232)
T ss_dssp             EEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCC--EEEEEEGGGTEEEEEECC
T ss_pred             EEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEE--EEEEEeCCCCccEEEEeC
Confidence            3433332111111  1111111     245666644556 788  999999987655444443

>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=2.6e-10  Score=72.88  Aligned_cols=97  Identities=16%  Similarity=0.223  Sum_probs=74.6

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      ...|.+|.++.+.......+.|.|.++ .++....|.+.|+...... .| .........+.|.+  |.+++.|.|+|.|
T Consensus         5 ~~~P~~P~~~~~~~~~~~sv~l~W~~~-~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A   80 (106)
T 2dju_A            5 SSGPKPPIDLVVTETTATSVTLTWDSG-NSEPVTYYGIQYRAAGTEG-PFQEVDGVATTRYSIGG--LSPFSEYAFRVLA   80 (106)
T ss_dssp             CCSCCCCEEEEEEEEETTEEEEEEECC-CSSCCSEEEEEEEETTCCS-CCCCBCCCCSSEEEEES--CCTTCEEEEEEEE
T ss_pred             CcCCcCCCCcEEEeccCCEEEEEEcCC-CCCCceEEEEEEEECCCCC-CeEEccCCCccEEEEeC--CCCCcEEEEEEEE
Confidence            467889988888888899999999974 2233355999887765432 22 22333567899999  9999999999999


Q ss_pred             EcCCCcCCceeeeeeeeccccc
Q psy11549        233 VNAKGRSLPVIWDDFSMSGAHY  254 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~~~~~~  254 (261)
                      .|..|.+.+|..+.+++....+
T Consensus        81 ~n~~G~~~~S~~~~~~T~~~~P  102 (106)
T 2dju_A           81 VNSIGRGPPSEAVRARTGEQSG  102 (106)
T ss_dssp             ECSSCBCCCCCCEEEECCCSSC
T ss_pred             EeCCccCCCcccEEeEcCCCCC
Confidence            9999999999988887665444

>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=1.2e-10  Score=76.50  Aligned_cols=100  Identities=10%  Similarity=0.036  Sum_probs=74.9

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCCCCC-CCe----EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGG-LPQ----TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~-~p~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      ..+|.+|.++++.......+.|+|..+.... ...    .|.+.|+........+.........++|.+  |++++.|+|
T Consensus        16 ~~pp~~P~~l~~~~~s~tsi~lsW~~p~~~~~~i~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~v~g--L~P~T~Y~f   93 (123)
T 2edd_A           16 STPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYTATG--LKPNTMYEF   93 (123)
T ss_dssp             CCSSCCCEEEEEEEEETTEEEEEEECSSSCSSCCCSCCCCEEEEEEETTCTTCCCCCEEESSSEEEEES--CCTTCEEEE
T ss_pred             CCCCCCCcceEEEEcCCCeEEEEecCCCCCcccccCcCceEEEEEEECCCCCccEEEEeCCceEEEecC--CCCCCEEEE
Confidence            3577789999998888999999999643222 112    699988775332222322222368899999  999999999


Q ss_pred             EEEEEcCCCcCCceeeeeeeeccc-ccC
Q psy11549        229 VISGVNAKGRSLPVIWDDFSMSGA-HYA  255 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~~~~~~~-~~~  255 (261)
                      +|.|.|..|.|.+|..+.+++... .+.
T Consensus        94 ~V~A~n~~g~g~~S~~v~~~T~~~~~Ps  121 (123)
T 2edd_A           94 SVMVTKNRRSSTWSMTAHATTYEASGPS  121 (123)
T ss_dssp             EEEECCSSSCCCCCCCEEEECCCSSSCC
T ss_pred             EEEEeCCCcccCCCCCEEEEccCCCCCC
Confidence            999999999999999998887766 544

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.23  E-value=1.6e-10  Score=72.36  Aligned_cols=65  Identities=12%  Similarity=0.172  Sum_probs=49.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      +.+..|+.+.|.|.+ +.+.+ .+.|++++.... ......+...+....|.|.++..+|+|.|+|.+
T Consensus        18 ~~v~~G~~v~l~C~~-~~p~~-~v~W~k~~~~l~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A           18 VEVAAGSPAVFEAET-ERAGV-KVRWQRGGSDIS-ASNKYGLATEGTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             EEEETTSCEEEEEEC-SSSSC-CCEEECSSSEEC-SSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred             EEEeCCCcEEEEEEe-CCCCC-eEEEEECCEECC-CCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence            678899999999999 66666 899999874211 122223334445568999999999999999999

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.3e-10  Score=73.96  Aligned_cols=94  Identities=17%  Similarity=0.284  Sum_probs=61.3

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +|.+...... +.+..|+.+.|.|.+ +.|.+ .+.|++++.... ......+...+....|.|.++..+|+|.|+|.  
T Consensus         8 pp~~~~~~~~-~~v~~G~~v~l~C~~-~~p~~-~v~W~k~~~~l~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--   81 (103)
T 2dku_A            8 ANCFTEELTN-LQVEEKGTAVFTCKT-EHPAA-TVTWRKGLLELR-ASGKHQPSQEGLTLRLTISALEKADSDTYTCD--   81 (103)
T ss_dssp             CCCCSSCCCC-EEEETTSEEEEEEEC-SSCCS-CCEEEESSCBCC-SSSSEEEEEETTEEEEEEESCCTTTCSEEEEE--
T ss_pred             CCEeEecCCc-EEEeCCCcEEEEEEe-CCCCC-eEEEEeCCEECC-CCCeEEEEeCCCEEEEEECCCCcccCEEEEEE--
Confidence            3444444443 678899999999994 66666 899999874321 11122223344455899999999999999998  


Q ss_pred             cCCceEEeeEEEEEEeCCCCCCCC
Q psy11549        138 NAIGTQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus       138 ~~~~~~~~~~~~~v~~~~~p~~p~  161 (261)
                        .|.....  ..+.|..+|.+|.
T Consensus        82 --~g~~~~~--~~l~V~~~p~~p~  101 (103)
T 2dku_A           82 --IGQAQSR--AQLLVQGRRSGPS  101 (103)
T ss_dssp             --CSSCBCC--EEEEEECSCCCCS
T ss_pred             --eCCceEE--EEEEEeCccCCCC
Confidence              3444443  3444445665553

>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1

Probab=99.22  E-value=5e-08  Score=73.63  Aligned_cols=210  Identities=12%  Similarity=0.096  Sum_probs=132.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCC-CceeEEEEcC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPP-ARSFKWKFNN   98 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~   98 (261)
                      ..+.|.++...-.-.++..|.|..|..  ....+.+..+|.  .+............+.|.+....... .-.+.|...+
T Consensus        68 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s--~~~~~~~~t~p~--~P~~l~~~~~~~~sv~l~W~~p~~~i~~Y~v~~~~~~  143 (283)
T 1tdq_A           68 SQYSVQALRPGSRYEVSISAVRGTNES--DASSTQFTTEID--APKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLA  143 (283)
T ss_dssp             SEEEECSCCTTCEEEEEEEEEETTEEC--CCEEEEEECCCC--CCEEEEEEEECSSCEEEEEECCSSCCSEEEEEEEETT
T ss_pred             CEEEecCCCCCCEEEEEEEEECCCCCC--CCeeEEEECCCC--CCCceEEEecCCCeEEEEecCCCCCccEEEEEEEeCC
Confidence            467888887766666667777766553  223333332221  11121133345667778776553221 1134443322


Q ss_pred             CccccccCCceEEeCCc---eeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEE
Q psy11549         99 SGETLDVGSERFSSGSR---GSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHI  175 (261)
Q Consensus        99 ~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l  175 (261)
                      ..     ..........   ...+.+.++.....+.|...|.+..|....   ..+.....|.+|.++.+.......+.|
T Consensus       144 ~~-----~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~---~~~~~~t~~~~P~~l~~~~~~~~sv~l  215 (283)
T 1tdq_A          144 GE-----QYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIP---ATMNARTELDSPRDLMVTASSETSISL  215 (283)
T ss_dssp             CC-----CCEEEEEECCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCC---EEEEEECCCCCCEEEEEEEECSSCEEE
T ss_pred             CC-----cceEEECCCCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcc---eEEEecCCCCCCCccEEeEecCCEEEE
Confidence            11     1112222332   557889999999999999999987764332   233444566788888888778899999


Q ss_pred             EeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeee
Q psy11549        176 SCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       176 ~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~  246 (261)
                      .|.+  ..+.-..|.+.|+..+... ...........+.|.+  |.++..|.|++.|.|..|.+.++....
T Consensus       216 ~W~~--p~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~~~~g~s~~~~~~a  281 (283)
T 1tdq_A          216 IWTK--ASGPIDHYRITFTPSSGIS-SEVTVPRDRTSYTLTD--LEPGAEYIISITAERGRQQSLESTVDA  281 (283)
T ss_dssp             EEEC--CCSCCSEEEEEEECSSSCC-EEEEEESSCSEEEECC--CCTTCCEEEEEEEEETTEECCCEEEEE
T ss_pred             EEeC--CCCcccEEEEEEEcCCCCe-eEEEeCCCccEEEECC--CCCCCEEEEEEEEEcCCCCCcceeeEe
Confidence            9997  3343456999888755432 2223344568899999  999999999999999999998876643

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.22  E-value=1.2e-10  Score=74.20  Aligned_cols=76  Identities=16%  Similarity=0.209  Sum_probs=54.1

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC--CceEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG--SERFSSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      |.+.........+..|+.+.|.|.+ +.|.+ .+.|++++..  +...  ...+...+....|.|.++..+|+|.|+|.+
T Consensus        16 p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~-~v~W~k~g~~--l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (104)
T 1pd6_A           16 TAFQKKLEPAYQVSKGHKIRLTVEL-ADHDA-EVKWLKNGQE--IQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   91 (104)
T ss_dssp             SSCSEECCSEEEEETTSCEEEEEEC-SSSSS-CCEEEESSSE--ECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             CEEEEcCCCcEEEecCCCEEEEEEE-cCCCC-EEEEEECCEE--CCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            3343333333678899999999999 66666 7999998753  2222  223333455568999999999999999999


Q ss_pred             Ec
Q psy11549        137 QN  138 (261)
Q Consensus       137 ~~  138 (261)
                      .+
T Consensus        92 ~~   93 (104)
T 1pd6_A           92 GG   93 (104)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.22  E-value=5e-11  Score=87.93  Aligned_cols=163  Identities=16%  Similarity=0.120  Sum_probs=88.5

Q ss_pred             eeCCCcEEEEEEEeeC---CCCceeEEEEcCCccccccCCceEEeC----CceeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         71 ASRSESVDIHCAVEAD---PPARSFKWKFNNSGETLDVGSERFSSG----SRGSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~---~~~~~~~W~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      +..|+.++|.|.+.+.   |.+..+.|++++...............    ...+.|.|.++..+|.|.|+|.+.+..+..
T Consensus        29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~  108 (239)
T 1i1c_A           29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA  108 (239)
T ss_dssp             TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred             cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence            4689999999999887   555589999987321100000000111    123478999999999999999999987653


Q ss_pred             EeeEEEEEEeCCCCCCCCcceEEe-----ecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE--EEecCCCCcEEE
Q psy11549        144 VTPCLYQVVLAGKPQPPQNCSVRN-----ETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV--NLTNLDTPAFTL  215 (261)
Q Consensus       144 ~~~~~~~v~~~~~p~~p~~~~v~~-----~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~i  215 (261)
                      .....+.+ +.....+|. +.+..     ..+..++|.|.+  .+..|.. .+.|+++........  ......+..|.+
T Consensus       109 ~~~~~v~~-~~~~~~~P~-v~v~~~~~~~~~g~~~~L~C~~--~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~  184 (239)
T 1i1c_A          109 PIEKSISK-PEGTPRGPQ-VYTMAPPKEEMTQSQVSITCMV--KGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFL  184 (239)
T ss_dssp             CEEEEECC-CSSCCBCCE-EEEECCCGGGGGSSEEEEEEEE--EEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEE
T ss_pred             CcEEEEec-CCCCCcCCE-EEEECCChHHhcCCcEEEEEEE--eeeECCCeEEEEEECCEECCCceecCceECCCCCEEE
Confidence            22112211 112222332 12221     236789999997  4434532 334445433221111  111122333333


Q ss_pred             cC-CCC-----CCccEEEEEEEEEcCCCcC
Q psy11549        216 ED-LGL-----DGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       216 ~~-~~l-----~~~~~Y~~~~~a~N~~G~~  239 (261)
                      .. +.+     .+++.|  +|.|.|.....
T Consensus       185 ~s~l~v~~~~~~~~g~Y--tC~v~n~~l~~  212 (239)
T 1i1c_A          185 YSKLNVKKETWQQGNTF--TCSVLHEGLEN  212 (239)
T ss_dssp             EEEEEEEHHHHHTTCCE--EEEEECTTSGG
T ss_pred             EEEEEEChhhcCCCCEE--EEEEECCCCCC
Confidence            21 112     247889  99999988543

>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1

Probab=99.22  E-value=1.9e-08  Score=71.01  Aligned_cols=130  Identities=15%  Similarity=0.002  Sum_probs=95.8

Q ss_pred             CCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEE
Q psy11549        113 GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLE  192 (261)
Q Consensus       113 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~  192 (261)
                      ......+.+.++.....+.|...+.+..+...   ...+.....|.+|.++.+.......+.|+|.++  .+.-..|.+.
T Consensus        54 ~~~~~~~~i~~L~p~t~Y~~~V~a~~~~~~s~---~~~~~~~t~p~~P~~l~~~~~~~~sv~l~W~~p--~~~i~~Y~v~  128 (186)
T 1qr4_A           54 PVDSTSFILRGLDAGTEYTISLVAEKGRHKSK---PTTIKGSTVVGSPKGISFSDITENSATVSWTPP--RSRVDSYRVS  128 (186)
T ss_dssp             CTTCSEEEEESCCSSCEEEEEEEEESSSCBCC---CEEEEEECCCCCCSCEEEESCCSSCEEEEECCC--SSCCSEEEEE
T ss_pred             CCCCCEEEECCCCCCCEEEEEEEEEcCCccCC---CEEEEEECCCCCCCccEEEEeCCCEEEEEEECC--CCcccEEEEE
Confidence            33445788999999999999999988644332   223444467889999988888899999999973  3334569998


Q ss_pred             EEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeee
Q psy11549        193 LYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      |+..................+.|.+  |.++..|.|++.|.|..|.+.+......+.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~~~~g~s~p~~~~~~T~  183 (186)
T 1qr4_A          129 YVPITGGTPNVVTVDGSKTRTKLVK--LVPGVDYNVNIISVKGFEESEPISGILKTA  183 (186)
T ss_dssp             EEETTCCCCEEEEEETTCCEEEECS--CCSSCEEEEEEEEEETTEECCCEEEEEEC-
T ss_pred             EEeCCCCCceEEEcCCCcCEEEEcC--CCCCCEEEEEEEEEcCCCcCcCEEEEEEec
Confidence            8876543323333344568999999  999999999999999999888766655443

>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B

Probab=99.21  E-value=4.3e-08  Score=77.07  Aligned_cols=213  Identities=9%  Similarity=-0.013  Sum_probs=135.8

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCc--eeEEEEc
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPAR--SFKWKFN   97 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~--~~~W~~~   97 (261)
                      ..+.|.++...-.-.|+..|.|..|.....  .+.....+.  .+............+.|.+.........  .+.|...
T Consensus       150 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s--~~~~~t~~~--~p~~l~~~~~~~~si~l~W~~p~~~~i~~Y~v~~~~~  225 (375)
T 3t1w_A          150 GYYTVTGLEPGIDYDISVITLINGGESAPT--TLTQQTAVP--PPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPV  225 (375)
T ss_dssp             CEEEEECCCTTCEEEEEEEEEETTEECCCE--EEEEECCCC--CCEEEEEESCCSSCEEEEEECCSSCCCCEEEEEEEEG
T ss_pred             ceEEEeCCCCCCEEEEEEEEEeCCcccCCe--eeeeecCCC--CCceeEEEecccCEEEEEEcCCCCCCccEEEEEEEeC
Confidence            478888888777777777888887754222  222221111  1112112233456777777664222111  3444332


Q ss_pred             CCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEeCCCCCCCCcceEEeecCCeEEEEe
Q psy11549         98 NSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISC  177 (261)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~~~~v~~~~~~~~~l~c  177 (261)
                      +..    ..............+.+.++.....+.|+..|.+..|.....   .......|.+|.++.+.......+.|+|
T Consensus       226 ~~~----~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~---~~~~~t~p~~P~~l~~~~~~~~sv~l~W  298 (375)
T 3t1w_A          226 KNE----EDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL---RGRQKTGLDSPTGIDFSDITANSFTVHW  298 (375)
T ss_dssp             GGT----TCCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE---EEEEECCCCCCEEEEEESCCSSCEEEEE
T ss_pred             CCC----CCcEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCce---eeEEecCCCCCCccEeeeccCCEEEEEE
Confidence            210    111122333444578999999999999999999977654432   2333457888888888877899999999


Q ss_pred             ecCCCCCCCeEEEEEEEeCCc-cceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        178 TPGYDGGLPQTFTLELYSASD-LNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       178 ~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      .++  .+.-..|.+.++.... ..............+.|.+  |.++..|.|+|.|.|..|.|++..-...
T Consensus       299 ~~p--~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~~~~G~s~p~s~~~~  365 (375)
T 3t1w_A          299 IAP--RATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTN--LTPGTEYVVSIVALNGREESPLLIGQQS  365 (375)
T ss_dssp             ECC--SSCCSEEEEEEEETTCCSSCEEEEEETTCCEEEECS--CCTTCEEEEEEEEEETTEECCCEEEEEE
T ss_pred             CCC--CcceeeEEEEEEECCCCCcceeEEcCCCccEEEECC--CCCCCEEEEEEEEECCCCCCCceeeeeE
Confidence            973  3444669998887654 2223334445568999999  9999999999999999999987765444

>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=4.2e-10  Score=72.94  Aligned_cols=98  Identities=15%  Similarity=0.093  Sum_probs=74.7

Q ss_pred             CCCCCCCcceEEee--cCCeEEEEeecCCCCCCC-eEEEEEEEeCCccc-ee--EEEecCCCCcEEEcCCCCCCccEEEE
Q psy11549        155 GKPQPPQNCSVRNE--TTSSVHISCTPGYDGGLP-QTFTLELYSASDLN-LL--VNLTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       155 ~~p~~p~~~~v~~~--~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      .+|.+|.++.+...  ....+.|+|.++...+.+ ..|.+.|+...... ..  ..........++|.+  |.++..|.|
T Consensus         7 ~P~~~P~~l~~~~~~~~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~   84 (114)
T 2ede_A            7 GPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMD--LNLDTMYYF   84 (114)
T ss_dssp             CCCSCCEEEEEEECSSCSSCEEEEEECCSSCSSCCSEEEEEEESCSSSCTTTSEEEEEETTCCEEEECS--CCSSCEEEE
T ss_pred             CCCCCCcceEEEEccCCCCEEEEEECCCCCCCCceeEEEEEEEeCCCCCccceEEEEECCCceEEEEcC--CCCCCEEEE
Confidence            45678888888876  678999999976544445 46999988744321 11  233345568899999  999999999


Q ss_pred             EEEEEcCCCcCCceeeeeeeeccccc
Q psy11549        229 VISGVNAKGRSLPVIWDDFSMSGAHY  254 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~~~~~~~~~  254 (261)
                      +|.|.|..|.+.+|..+.+++...++
T Consensus        85 ~V~A~n~~G~g~~S~~~~~~T~~~~p  110 (114)
T 2ede_A           85 RIQARNSKGVGPLSDPILFRTLKVSG  110 (114)
T ss_dssp             EEEEECSSCBCCCCCCEEEECCCSSC
T ss_pred             EEEEEeCCcCcCCcccEEEEecCCCC
Confidence            99999999999999999888765544

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.21  E-value=6e-10  Score=81.18  Aligned_cols=155  Identities=12%  Similarity=0.177  Sum_probs=97.3

Q ss_pred             EeeCCCcEEEEEEEeeCCC---CceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         70 GASRSESVDIHCAVEADPP---ARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      .+..|+.++|.|.+.+..+   +..++|++++..  +         .+....|.+..+...++|.|+|.+.+..|....+
T Consensus        13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~--I---------sGaT~tLti~s~t~sdSG~YqCvVTDa~Gcs~tS   81 (304)
T 3shs_A           13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQP--H---------ENNTATLTVADATSENAGSYKVTVQDTDTMTSVE   81 (304)
T ss_dssp             SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEE--C---------SCCSSEEEESSCCGGGCEEEEEEEEETTTCCEEE
T ss_pred             cccCCCCEEEEEEecCCCCCCCCceEEEEECCcc--c---------cCCcceEEeeeccccCCeEEEEEEEECCCCeeee
Confidence            3568999999999987654   558999998732  1         1123368999999999999999999877654433


Q ss_pred             EEEEEEeCCCC----CCCCcceEEeecCCeEEEEeecCCCCCCC------eEEEEEEEeCCccceeEEEecCCCCcEEEc
Q psy11549        147 CLYQVVLAGKP----QPPQNCSVRNETTSSVHISCTPGYDGGLP------QTFTLELYSASDLNLLVNLTNLDTPAFTLE  216 (261)
Q Consensus       147 ~~~~v~~~~~p----~~p~~~~v~~~~~~~~~l~c~~~~~~~~p------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  216 (261)
                      ..+.+.....+    ..|..+.  ...+..+.|...+...+|.|      ..|.|.  ..+..       ......+++.
T Consensus        82 s~VtVT~~a~l~i~it~P~s~~--vssg~sVtL~aTVt~SGGtppA~~~~yTYQWy--Kngt~-------IsgAq~lT~s  150 (304)
T 3shs_A           82 SEVFLMEEAELIVNITEPQHFY--VSSQTDVELHATVKFSGGKTPADNYELHYSWS--KGEDV-------IDTTQDITIQ  150 (304)
T ss_dssp             CCCEEECBCCEEEEESSCSEEE--ECSSCCEEEEEEEEETTSCCSSTTCCCEEEEE--ETTEE-------EESSSEEEEC
T ss_pred             eeEEEeccCceeEEecCCCcee--ccCCCeEEEEEEEeccCCCCcccCCCceeEEe--eCCeE-------ccCcccccee
Confidence            23333322111    1232222  23467788877642234433      345553  33221       1233567777


Q ss_pred             CCCCCCccEEEEEEEEEcCCCcCCceeeeeee
Q psy11549        217 DLGLDGTVLMRVVISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       217 ~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~  248 (261)
                      .....+.|.|  .|.+.|..|....|.-..+.
T Consensus       151 S~TateaG~Y--tV~VTn~~~~c~~s~~~~i~  180 (304)
T 3shs_A          151 EFTADKNGVY--TVKVWGESEDSAASASTKIM  180 (304)
T ss_dssp             SCCGGGCEEE--EEEEESSSGGGCEEEEEEEE
T ss_pred             eEEecCCeEE--EEEEEcCCCCcccccceEEE
Confidence            7778899999  88888998866666555443

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.21  E-value=7.9e-11  Score=87.37  Aligned_cols=172  Identities=12%  Similarity=0.084  Sum_probs=90.3

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----------------cCCceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----------------VGSERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----------------~~~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +.+.+|++++|.|.+.+.. ....+.|++...+....                ....++..    ......|.|.++..+
T Consensus         9 v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~   88 (248)
T 3u2s_H            9 GVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVE   88 (248)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             EEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHH
Confidence            5678999999999997632 22379999754322110                00123332    133557999999999


Q ss_pred             cCeEEEEEEEcCCc--------------------eEEeeEEEEEEeC-CCCCCCCcceE----EeecCCeEEEEeecCCC
Q psy11549        128 DYGTLSCAAQNAIG--------------------TQVTPCLYQVVLA-GKPQPPQNCSV----RNETTSSVHISCTPGYD  182 (261)
Q Consensus       128 d~g~y~C~~~~~~~--------------------~~~~~~~~~v~~~-~~p~~p~~~~v----~~~~~~~~~l~c~~~~~  182 (261)
                      |+|.|.|.+.+..+                    .........+.|. .++.+|.....    ....+..++|.|.+  .
T Consensus        89 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~--~  166 (248)
T 3u2s_H           89 DTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV--K  166 (248)
T ss_dssp             GCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEEEE--E
T ss_pred             HCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEE--e
Confidence            99999999986410                    1111111233333 33333322111    11348899999997  3


Q ss_pred             CCCCeE-EEEEEEeCCccceeE-EEecCCC------CcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeee
Q psy11549        183 GGLPQT-FTLELYSASDLNLLV-NLTNLDT------PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWD  245 (261)
Q Consensus       183 ~~~p~~-~~~~~~~~~~~~~~~-~~~~~~~------~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~  245 (261)
                      +..|.. ...|++......... .......      ..++|......+ +.|  +|.+.|..+.......+
T Consensus       167 ~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~y--tC~v~h~~~~~~~~~~l  234 (248)
T 3u2s_H          167 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY--ICNVNHKPSNTKVDKKV  234 (248)
T ss_dssp             EEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCC--EEEEEEGGGTEEEEEEC
T ss_pred             eEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeE--EEEEEECCCCcceEEEE
Confidence            434422 223333332111111 0011111      245565544455 788  99999988755444333

>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=5.1e-11  Score=78.56  Aligned_cols=114  Identities=18%  Similarity=0.230  Sum_probs=80.9

Q ss_pred             EEEEcCCceEEeeEEEEEE-eCCCCC-CCCcceEEeecCCeEEEEeecCCC--CCCC-eEEEEEEEeCCccceeEEEecC
Q psy11549        134 CAAQNAIGTQVTPCLYQVV-LAGKPQ-PPQNCSVRNETTSSVHISCTPGYD--GGLP-QTFTLELYSASDLNLLVNLTNL  208 (261)
Q Consensus       134 C~~~~~~~~~~~~~~~~v~-~~~~p~-~p~~~~v~~~~~~~~~l~c~~~~~--~~~p-~~~~~~~~~~~~~~~~~~~~~~  208 (261)
                      +.|.|..|....+..+.+. ....|. +|.++.+.......+.|+|.++..  .+.+ ..|.+.|+....... ......
T Consensus         4 V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~-~~~~~~   82 (124)
T 2ed9_A            4 GSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGE-METLEP   82 (124)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCC-EEEECS
T ss_pred             EEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcc-eEEecC
Confidence            4455555544332222222 123454 788888888889999999998654  3444 459999887655432 223445


Q ss_pred             CCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        209 DTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       209 ~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      ....+.|.+  |.+++.|.|++.|.|..|.+.+|..+.+++.
T Consensus        83 ~~~~~~i~~--L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~  122 (124)
T 2ed9_A           83 NNLWYLFTG--LEKGSQYSFQVSAMTVNGTGPPSNWYTAETP  122 (124)
T ss_dssp             SCSEEEEEC--CCSSCEEEECEEEECSSCBCCCCCCEEEECC
T ss_pred             CcCEEEEcC--CCCCCEEEEEEEEEcCCccCCCCCCEEEECC
Confidence            568899999  9999999999999999999999999888765

>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}

Probab=99.21  E-value=3.2e-09  Score=90.00  Aligned_cols=134  Identities=16%  Similarity=0.112  Sum_probs=93.8

Q ss_pred             eeEEEEecCCCCcCeEEEEEEEcCCce-E--EeeEEEEEEeC-CCCCCCCcceEEee--cCC---eEEEEeecCCCCCCC
Q psy11549        116 GSMLRYTPVTELDYGTLSCAAQNAIGT-Q--VTPCLYQVVLA-GKPQPPQNCSVRNE--TTS---SVHISCTPGYDGGLP  186 (261)
Q Consensus       116 ~~~l~i~~~~~~d~g~y~C~~~~~~~~-~--~~~~~~~v~~~-~~p~~p~~~~v~~~--~~~---~~~l~c~~~~~~~~p  186 (261)
                      ...+.|.++.+...+.|++.|.|..|. .  ..+..+..... .+|.+|.++.+...  ..+   .+.|.|.++...+.+
T Consensus       222 ~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~pp~~P~~l~~~~~~~~~~g~~sv~l~W~pP~~~~g~  301 (680)
T 1zlg_A          222 DERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIP  301 (680)
T ss_pred             CCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCCCCCCCCceEeeeeeecCCCceEEEEEecCCCCCCCc
Confidence            346889999999999999999998772 2  22222322222 57889999988766  667   999999976545556


Q ss_pred             eE-EEEEEEeC-C----ccceeE--EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceee---eeeeecc
Q psy11549        187 QT-FTLELYSA-S----DLNLLV--NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIW---DDFSMSG  251 (261)
Q Consensus       187 ~~-~~~~~~~~-~----~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~---~~~~~~~  251 (261)
                      +. |.+.|+.. .    .....|  .........++|.+  |.++..|.|+|.|.|..|.+..|..   +.+.+..
T Consensus       302 i~~Y~V~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~--L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~  375 (680)
T 1zlg_A          302 VHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEK--LQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTH  375 (680)
T ss_pred             eeEEEEEEEecccccccCCccceEEEEEcCCeeEEEeCC--CCCCCEEEEEEEEEECCCcCCCCCCceeEEEECCC
Confidence            54 88888722 1    111122  22233447899999  9999999999999999999887776   5555433

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.21  E-value=3.1e-11  Score=85.20  Aligned_cols=119  Identities=12%  Similarity=0.005  Sum_probs=78.3

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCce--eEEEEcC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARS--FKWKFNN   98 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~--~~W~~~~   98 (261)
                      .+.|++++ +|.+.|.|.+... +...+..+.|.|...|...........+.+|+.++|.|.+.+..++.+  +.|++++
T Consensus        53 ~~~ls~vs-~d~~~~~C~~~c~-~~~~~~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~  130 (196)
T 3bn3_B           53 ARQLVDIR-EPETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGA  130 (196)
T ss_dssp             EEEEEEEC-SSEECCEEEEEET-TEEEEEECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETT
T ss_pred             EEEEEEEc-cCCCceEEEEECC-CCceEEEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCC
Confidence            38999999 9989899997554 344577889999887765432221122679999999999998777434  8999976


Q ss_pred             Ccccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         99 SGETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        99 ~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ....... ....-........+.+.....++...|+|.|.+..+
T Consensus       131 ~~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B          131 QELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             EEEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred             EEeeccccccccccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence            4211100 000000011234566766666666699999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	261
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-07
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-04
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	3e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	8e-04
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	2e-05
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	7e-04
d1x5za1	102	b.1.2.1 (A:8-109) Receptor-type tyrosine-protein p	2e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-05
d1wf5a1	108	b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)	2e-05
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	3e-05
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	4e-05
d1x4za1	108	b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {	5e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-04
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	0.002
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	2e-04
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	0.002
d1uema_	117	b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens	2e-04
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-04
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	3e-04
d1x3da1	105	b.1.2.1 (A:8-112) Fibronectin type-III domain cont	4e-04
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-04
d1wfoa1	117	b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens)	4e-04
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	5e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	6e-04
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	6e-04
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	7e-04
d1bqua1	95	b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-	8e-04
d1fnfa2	91	b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 m	8e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	0.004
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.001
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	0.001
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	0.001
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.001
d1tdqa3	86	b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegic	0.001
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.001
d2vkwa2	93	b.1.2.1 (A:601-693) Neural cell adhesion molecule	0.002
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.003
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.003
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.003
d1n26a3	104	b.1.2.1 (A:196-299) Interleukin-6 receptor alpha c	0.003
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	0.004
d1vcaa1	109	b.1.1.3 (A:91-199) Vascular cell adhesion molecule	0.004

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 3e-07
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 8/99 (8%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
            D+ V  G    ESV++   V    P  +  W              +  +   GS L   
Sbjct: 8   EDQKVRAG----ESVELFGKVTGTQPI-TCTWMKFRKQIQES-EHMKVENSENGSKLTIL 61

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ 161
              +   G  +   +N +G++       + +  KP PP 
Sbjct: 62  AARQEHCGCYTLLVENKLGSRQAQV--NLTVVDKPDPPA 98

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
             L +    ++  G Y     N  G   +  + L V   P
Sbjct: 55 GSKLTILAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDKP 94

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSC 134
            +V   C    +P   + +W  N      +     +   ++   L    V   D G  +C
Sbjct: 21  NTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 79

Query: 135 AAQNAIGTQVTPCLYQVV 152
             +N  G+        VV
Sbjct: 80  VVENEYGSINHTYHLDVV 97

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 3e-06
 Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
               V  G    + V ++C+VE          K     + LD      S       L   
Sbjct: 4   VKLTVSQG----QPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLK 59

Query: 123 PVTELDYGTLSCAAQNAIGTQVT 145
            V   D G   C  ++   T+++
Sbjct: 60  SVERSDAGRYWCQVEDGGETEIS 82

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 8e-04
 Identities = 10/34 (29%), Positives = 14/34 (41%)

Query: 23 VLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
           L+ V R  AG Y C   +      S  + L V+
Sbjct: 57 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 57  YAPICK---SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG 113
           Y P+ +   +  +   G S  E V + C   A+PPA               +G +     
Sbjct: 3   YGPVFEEQPAHTLFPEG-SAEEKVTLTCRARANPPATYRWKMNGTEL---KMGPDSRYRL 58

Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145
             G ++   PV   D G+  C A NA GT V+
Sbjct: 59  VAGDLVISNPVKAKDAGSYQCVATNARGTVVS 90

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.0 bits (82), Expect = 7e-04
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR 54
             ++   V  + AG+Y+C A N +G   S +  LR
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 151 VVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDT 210
           +   G P  P N     E+ +S+ +S TP     +       +Y   +      +T    
Sbjct: 5   ITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTI--ANYELVYKDGEHGEEQRITIEPG 62

Query: 211 PAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
            ++ L+ L  +     R+  +  + +G    
Sbjct: 63  TSYRLQGLKPNSLYYFRL--AARSPQGLGAS 91

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
            S  +   +++ AG Y+C      G   SN  +L VK
Sbjct: 59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK 96

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 16/94 (17%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 150 QVVLAGKPQPPQN--CSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTN 207
            + +   P  P++   ++      +++++ T  +DG  P    +   S ++    V L +
Sbjct: 4   HLRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLAS 63

Query: 208 LDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
           +D  A ++   GL      +  +  VN  G+   
Sbjct: 64  VDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQF 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 20/92 (21%), Positives = 30/92 (32%)

Query: 60  ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSML 119
           +     IV   A+  +SV + C  +  P       K     E  +   E+       S L
Sbjct: 6   VQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSEL 65

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQV 151
               V + D     C A+N  G Q      +V
Sbjct: 66  TIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.5 bits (91), Expect = 4e-05
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 4/92 (4%)

Query: 62  KSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRY 121
             D +   G    +   I+C   ++P      +K                + + G  L +
Sbjct: 10  SKDMMAKAG----DVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLF 65

Query: 122 TPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL 153
                 D G  +C   N +G      L   V+
Sbjct: 66  KTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTL----ELYSASDLNLLVNLTNLDTPA 212
           P+ P   ++   + +SV+++  P  +GG P         +L    D  L  +       +
Sbjct: 11  PEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLS 70

Query: 213 FTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
             +  L    +   RV    +N  G S P
Sbjct: 71  VEITGLEKGISYKFRV--RALNMLGESEP 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (87), Expect = 1e-04
 Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 6/95 (6%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
               V  G    +S + +C V A  P      K +   E                 L   
Sbjct: 9   YGTEVGEG----QSANFYCRVIASSPPVVTWHKDDR--ELKQSVKYMKRYNGNDYGLTIN 62

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVVLAGKP 157
            V   D G  +  A+N+ GT+       V    +P
Sbjct: 63  RVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSEP 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
          +  L + +V     G Y   A N+ G      + L V    
Sbjct: 56 DYGLTINRVKGDDKGEYTVRAKNSYGTKEEI-VFLNVTRHS 95

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.4 bits (86), Expect = 2e-04
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 14 RIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
          R  +++  LV++ V     G Y C A N  G+       ++V
Sbjct: 48 RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFE-TLVQV 88

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 68  IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTEL 127
           ++   + + V I C V   P   +  W  N    +         +    S L    V   
Sbjct: 12  VIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAKPLSGG------RATVTDSGLVIKGVKNG 64

Query: 128 DYGTLSCAAQNAIGTQVTPCLYQV 151
           D G   C A N  G +    L QV
Sbjct: 65  DKGYYGCRATNEHGDKYFETLVQV 88

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 20/92 (21%), Positives = 34/92 (36%)

Query: 150 QVVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLD 209
              L+  P PP    V + T +SV +S  PG  G LP +  +    +  ++         
Sbjct: 9   NYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANH 68

Query: 210 TPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
                    GL    +   ++  +N +G S P
Sbjct: 69  VKTTLYTVRGLRPNTIYLFMVRAINPQGLSDP 100

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 36.9 bits (84), Expect = 2e-04
 Identities = 11/37 (29%), Positives = 15/37 (40%)

Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
            SLV  +      G Y+C A    G A+S  +  R 
Sbjct: 57 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 14/89 (15%), Positives = 20/89 (22%), Gaps = 5/89 (5%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
             + V  G            V   P     +W  N            +        L   
Sbjct: 12  QSQTVGQG----SDAHFRVRVVGKPDP-ECEWYKNGVKIERSDRIYWYWPEDNVCELVIR 66

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQV 151
            VT  D  ++   A N  G   +     V
Sbjct: 67  DVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 10/41 (24%), Positives = 20/41 (48%)

Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
          N ++ +   + + +GTY C+    + +  S  L + V  AP
Sbjct: 48 NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 88

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 4e-04
 Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 3/100 (3%)

Query: 153 LAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTF-TLELYSASDLNLLVNLTNLDTP 211
           L+ +P  P    + N T +S+ +      D G       LE                   
Sbjct: 7   LSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQK 66

Query: 212 AFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMSG 251
            F +  L        R+  S  N  G S       +  SG
Sbjct: 67  QFKITKLSPAMGCKFRL--SARNDYGTSGFSEEVLYYTSG 104

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 56  KYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSR 115
           +YAP  K+       A   + V + C    +P  +    K + S        +     S 
Sbjct: 2   QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGS--------QTSKWLSS 53

Query: 116 GSMLRYTPVTELDYGTLSCAAQNAIGTQVT 145
             +L    V   D GT  C A+N  G    
Sbjct: 54  EPLLHIQNVDFEDEGTYECEAENIKGRDTY 83

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 4e-04
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 1/102 (0%)

Query: 141 GTQVTPCLYQVVLAGKPQPPQNCSVRNETTSSVHISCT-PGYDGGLPQTFTLELYSASDL 199
           G+   P + +  L   P PP         T+SV +    P    G+   + +     +  
Sbjct: 5   GSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTT 64

Query: 200 NLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLP 241
                +  L   A      GL    +    I+    KG    
Sbjct: 65  ANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEA 106

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 5e-04
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP 59
          N  L +  + R+ AG Y+C   N      SN +KL + + P
Sbjct: 55 NSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 95

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 6e-04
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 9   HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSN-QLKLRV 55
              + R+  S+  +    V+R+  G Y C      G+      + L V
Sbjct: 54  APYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTV 101

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 6e-04
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG---SML 119
              +V VG    +S  I C V    P  S         ETL   +   ++ +     +  
Sbjct: 10  QPTLVAVG----KSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATF 65

Query: 120 RYTPVTELDYGTLSCAAQNAIGTQ 143
             T   E  +   SC A   + ++
Sbjct: 66  NSTADREDGHRNFSCLAVLDLMSR 89

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 7e-04
 Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPAR-SFKWKFNNSGETLDVGSE----------RFS 111
           ++   +VG      V+  C V +D      +      +G                    +
Sbjct: 13  ANASTVVG----GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNT 68

Query: 112 SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
           +     +L    VT  D G  +C A N+IG         V+
Sbjct: 69  TDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 8e-04
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTL 191
           P+ P+N S        +      G +  L   FTL
Sbjct: 4   PEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTL 38

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 8e-04
 Identities = 15/84 (17%), Positives = 26/84 (30%), Gaps = 2/84 (2%)

Query: 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDL 218
           PP +    N    ++ ++  P        T  L  YS       V   ++      +   
Sbjct: 3   PPTDLRFTNIGPDTMRVTWAPPPSI--DLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 60

Query: 219 GLDGTVLMRVVISGVNAKGRSLPV 242
            L       V +S V  +  S P+
Sbjct: 61  NLLPGTEYVVSVSSVYEQHESTPL 84

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 8e-04
 Identities = 14/89 (15%), Positives = 23/89 (25%), Gaps = 6/89 (6%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
               V  G    ES    C  + +P                     + ++    S    +
Sbjct: 7   RSMTVYEG----ESARFSCDTDGEPVPT--VTWLRKGQVLSTSARHQVTTTKYKSTFEIS 60

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQV 151
            V   D G  S   +N+ G Q       +
Sbjct: 61  SVQASDEGNYSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 33.3 bits (75), Expect = 0.004
 Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK 56
            +  +  V     G Y     N++G+  +    L ++
Sbjct: 54 KSTFEISSVQASDEGNYSVVVENSEGKQEAE-FTLTIQ 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 10/101 (9%)

Query: 52  KLRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS 111
           KL  K AP   + +    G    E   I C V +  P           G  + +  +   
Sbjct: 1   KLMFKNAP---TPQEFKEG----EDAVIVCDVVSSLPPTIIWKHK---GRDVILKKDVRF 50

Query: 112 SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVV 152
                + L+   + + D GT  C  +     ++     QV+
Sbjct: 51  IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 91

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 5/80 (6%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
            D     G    E V++ C V ++  A    +K             R     +  +L   
Sbjct: 8   EDTTAYCG----ERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIE 62

Query: 123 PVTELDYGTLSCAAQNAIGT 142
             T+ D    S        +
Sbjct: 63  GATKADAAEYSVMTTGGQSS 82

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 16 ILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQ-LKLRV 55
          IL+N  L ++ ++R  +GTY  +  +T G    N+ L LR+
Sbjct: 56 ILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI 96

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 67  VIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTE 126
           +I+ +S +E     C +  +    +  W  ++S   +           +   L + P   
Sbjct: 10  IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK-LWFVPAKV 68

Query: 127 LDYGTLSCAAQNAIGTQVTPCLYQVV 152
            D G   C  +N+          + V
Sbjct: 69  EDSGHYYCVVRNSSYCLRIKISAKFV 94

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 86

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (79), Expect = 0.001
 Identities = 8/84 (9%), Positives = 26/84 (30%), Gaps = 5/84 (5%)

Query: 159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDL 218
            P++  V   + +S+ +  T                + +  + + +   +     +    
Sbjct: 3   SPRDLMVTASSETSISLIWTKASG-----PIDHYRITFTPSSGISSEVTVPRDRTSYTLT 57

Query: 219 GLDGTVLMRVVISGVNAKGRSLPV 242
            L+      + I+    + +SL  
Sbjct: 58  DLEPGAEYIISITAERGRQQSLES 81

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.001
 Identities = 12/77 (15%), Positives = 17/77 (22%), Gaps = 4/77 (5%)

Query: 69  VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD 128
           + +   +SV + C         +  W                     G  L    V   D
Sbjct: 16  LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM----GRRLLLRSVQLHD 71

Query: 129 YGTLSCAAQNAIGTQVT 145
            G  SC         V 
Sbjct: 72  SGNYSCYRAGRPAGTVH 88

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTL 215
           P  P+      E  +S+ ++     DGG P   + +   + S            +    L
Sbjct: 1   PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVML 60

Query: 216 EDLGLDGTVLMRVVISGVNAKGRSLP 241
           + L  +    + V     N +G+S  
Sbjct: 61  KSLDWNAEYEVYV--VAENQQGKSKA 84

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 10/89 (11%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
           +D    +G      +   C     P       +      + +              LR++
Sbjct: 9   TDTEADIG----SDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG------GELRFS 58

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQV 151
            +   D G   C A+N  GT        V
Sbjct: 59  KLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 5/89 (5%)

Query: 63  SDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYT 122
            D  V+ G     +    C VE  P      W  +++        +          L  +
Sbjct: 16  LDMEVVEG----SAARFDCKVEGYPDP-EVMWFKDDNPVKESRHFQIDYDEEGNCSLTIS 70

Query: 123 PVTELDYGTLSCAAQNAIGTQVTPCLYQV 151
            V   D    +C A N++G         V
Sbjct: 71  EVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.003
 Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 3/47 (6%)

Query: 9  HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV 55
                +   + SL +  ++      Y+  + N      + +  L V
Sbjct: 49 FKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYV 92

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 7/94 (7%)

Query: 156 KPQPPQNCSVRNETTSS----VHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDT 210
           +P PP N +V     +     V       ++       F L   +         +     
Sbjct: 1   QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQ 60

Query: 211 PAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIW 244
               + D       ++++        G+     W
Sbjct: 61  HHCVIHDAWSGLRHVVQL--RAQEEFGQGEWSEW 92

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 14/90 (15%), Positives = 22/90 (24%), Gaps = 9/90 (10%)

Query: 54  RVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG 113
           RV+ AP         VG    + + + C VE   P            + L          
Sbjct: 6   RVELAP---LPSWQPVG----KQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPA 58

Query: 114 SRGSMLRYTPVTELDYGTLSCAAQNAIGTQ 143
                       +      SC  +  +  Q
Sbjct: 59  E--VTTTVLVRRDHHGAQFSCRTELDLRPQ 86

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.004
 Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 75  ESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRG-----SMLRYTPVTELDY 129
           + + + C+V    P    +         +        +  +        + +TPV E   
Sbjct: 17  KPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIG 76

Query: 130 GTLSCAAQNAIGTQ 143
             L C A+  I   
Sbjct: 77  KVLVCRAKLHIDEM 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.61
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.6
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.6
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.59
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.58
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.57
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.56
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.55
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.52
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.51
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.49
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.49
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.48
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.48
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.48
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.48
d2vkwa2	93	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.48
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.47
d1uema_	117	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	99.46
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.45
d1x3da1	105	Fibronectin type-III domain containing protein 3a,	99.44
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.44
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.44
d2avga1	110	Cardiac myosin binding protein C, different domain	99.42
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.42
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.41
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.41
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.41
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.4
d1x4za1	108	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.4
d1cfba1	100	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.4
d1wf5a1	108	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.39
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.38
d1x5ya1	98	Myosin binding protein C, fast-type {Mouse (Mus mu	99.38
d1x4xa1	93	Fibronectin type-III domain containing protein 3a,	99.38
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.38
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.37
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.37
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.37
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.36
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.36
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.36
d1x5la1	98	Ephrin type-A receptor 8 {Human (Homo sapiens) [Ta	99.35
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.35
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.35
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.35
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.34
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.34
d1x5ga1	103	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.34
d1wfoa1	117	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.32
d1x5xa1	96	Fibronectin type-III domain containing protein 3a,	99.32
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.31
d1x5aa1	94	Ephrin type-A receptor 1 {Mouse (Mus musculus) [Ta	99.31
d2djsa1	95	Ephrin type-B receptor 1 {Human (Homo sapiens) [Ta	99.31
d1bqua1	95	Cytokine receptor gp130 cytokine-binding domains {	99.3
d2crma1	107	Fibronectin type-III domain containing protein 3a,	99.29
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.29
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.28
d1bpva_	104	Type I titin module {Human (Homo sapiens) [TaxId:	99.27
d2crza1	97	Fibronectin type-III domain containing protein 3a,	99.27
d1qg3a1	92	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.27
d1x5fa1	107	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.27
d2dn7a1	94	Receptor-type tyrosine-protein phosphatase F, PTPR	99.26
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.25
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.25
d1qg3a2	103	Integrin beta-4 subunit {Human (Homo sapiens) [Tax	99.24
d1wfna1	106	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.22
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.21
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.21
d1x5ka1	111	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.2
d1wisa1	111	Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}	99.2
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.19
d1ueya_	127	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	99.18
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.18
d1v5ja_	108	KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}	99.18
d2haza1	101	Neural cell adhesion molecule 1, NCAM {Human (Homo	99.17
d1k85a_	88	Fibronectin type III domain from chitinase A1. {Ba	99.17
d2ic2a1	107	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.16
d1cd9b1	107	Granulocyte colony-stimulating factor (GC-SF) rece	99.16
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.15
d1x5za1	102	Receptor-type tyrosine-protein phosphatase delta,	99.14
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.13
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.13
d1f6fb2	103	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	99.13
d2fnba_	95	Fibronectin, different Fn3 modules {Human (Homo sa	99.12
d2ibga1	95	Hedgehog receptor iHog {Fruit fly (Drosophila mela	99.12
d1wfua_	120	Fibronectin type 3 and ankyrin repeat domains 1 pr	99.12
d1n26a3	104	Interleukin-6 receptor alpha chain, domains 2 and	99.12
d3d48r2	104	Prolactin receptor {Human (Homo sapiens) [TaxId: 9	99.09
d1x5ja1	100	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1qr4a2	88	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	99.08
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.07
d1x5ha1	119	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1cfba2	105	Neuroglian, two amino proximal Fn3 repeats {Drosop	99.06
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1j8ka_	94	Fibronectin, different Fn3 modules {Human (Homo sa	99.04
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.04
d1fnha1	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.04
d1tena_	90	Tenascin {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.03
d1x4ya1	101	Brother of CDO precursor (BOC) {Mouse (Mus musculu	99.02
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.02
d1wfta_	123	Host cell factor 2, HCF-2 {Mouse (Mus musculus) [T	99.02
d2d9qb2	105	Granulocyte colony-stimulating factor (GC-SF) rece	99.02
d1iarb2	101	Interleukin-4 receptor alpha chain {Human (Homo sa	99.02
d1fnha2	90	Fibronectin, different Fn3 modules {Human (Homo sa	99.01
d2b5ic1	95	Cytokine receptor common gamma chain {Human (Homo	99.01
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.01
d2b5ib2	104	Interleukin-2 receptor beta chain {Human (Homo sap	99.0
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.0
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.99
d1fnfa3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.99
d1x5ia1	113	Neogenin {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.98
d2cuha1	102	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1qr4a1	87	Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}	98.97
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.96
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.95
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.94
d2gysa2	114	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.94
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.94
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.94
d2cuma1	93	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1tdqa1	93	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.93
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.93
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.93
d1cd9b2	106	Granulocyte colony-stimulating factor (GC-SF) rece	98.92
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.92
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.92
d2dtge1	102	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.92
d1owwa_	93	Fibronectin, different Fn3 modules {Human (Homo sa	98.92
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.92
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.91
d1tdqa2	92	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.91
d1fnfa2	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.91
d1axib2	106	Growth hormone receptor {Human (Homo sapiens) [Tax	98.91
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	98.91
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.9
d1fnha3	89	Fibronectin, different Fn3 modules {Human (Homo sa	98.9
d1va9a1	109	Down syndrome cell adhesion molecule-like protein	98.9
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.89
d1uena_	125	KIAA0343 protein {Human (Homo sapiens) [TaxId: 960	98.89
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.89
d1tdqa3	86	Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.88
d1erna2	105	Erythropoietin (EPO) receptor {Human (Homo sapiens	98.88
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.88
d1bqua2	115	Cytokine receptor gp130 cytokine-binding domains {	98.88
d1wj3a_	117	Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxI	98.87
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.86
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.86
d1wk0a_	137	Fibronectin type-III domain containing protein 3a,	98.84
d1fnaa_	91	Fibronectin, different Fn3 modules {Human (Homo sa	98.84
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.82
d1fnfa1	94	Fibronectin, different Fn3 modules {Human (Homo sa	98.81
d2cuia1	101	Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}	98.81
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.8
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.79
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.78
d1uc6a_	109	Ciliary neurotrophic factor receptor alpha {Human	98.78
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.77
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.73
d1pd6a_	94	Cardiac myosin binding protein C, different domain	98.72
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.7
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.69
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.69
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.68
d1ujta_	120	KIAA1568 protein {Human (Homo sapiens) [TaxId: 960	98.68
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	98.67
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.66
d2gysa4	100	Common beta-chain in the GM-CSF, IL-3 and IL-5 rec	98.62
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.61
d1fyhb1	98	Interferon-gamma receptor alpha chain {Human (Homo	98.61
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.6
d3d85d3	94	The p40 domain of interleukin-12 (IL-12 beta chain	98.6
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.59
d1gxea_	130	Cardiac myosin binding protein C, different domain	98.59
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	98.58
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.56
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.55
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.55
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.54
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.54
d2cspa1	117	Rim binding protein 2 {Human (Homo sapiens) [TaxId	98.52
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	98.52
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.49
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.49
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	98.46
d2avga1	110	Cardiac myosin binding protein C, different domain	98.46
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.45
d1y6kr1	99	Interleukin-10 receptor 1, IL-10R1 {Human (Homo sa	98.44
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.43
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.43
d2dtge3	125	Insulin receptor {Human (Homo sapiens) [TaxId: 960	98.42
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.41
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.41
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.41
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.4
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.4
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.39
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.37
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.36
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.36
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.35
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.35
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.35
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.34
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.34
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.34
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.34
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.33
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.32
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.31
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.3
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.29
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.29
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.29
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.28
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.28
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.27
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.27
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.27
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.26
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.26
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.26
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.25
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.25
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.25
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.25
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.24
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.23
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.22
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.22
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.21
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.21
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.2
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.19
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.19
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.18
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.18
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.17
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.17
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.17
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.17
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.16
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.15
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.15
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.15
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.11
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.11
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.1
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.09
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.08
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.07
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.06
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.05
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.04
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.04
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.04
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.03
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.03
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.03
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.03
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.01
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.98
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.98
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.98
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.98
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.97
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.97
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	97.96
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.96
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.96
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.95
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.95
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.94
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.94
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.93
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.92
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.91
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	97.89
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.87
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.87
d1f6fb1	96	Prolactin receptor {Rat (Rattus norvegicus) [TaxId	97.87
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.86
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.84
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.84
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.83
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.82
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.82
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.81
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.81
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.78
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.74
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.7
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.67
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.67
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	97.67
d2dtge2	196	Insulin receptor {Human (Homo sapiens) [TaxId: 960	97.67
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.62
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.62
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.61
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.6
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.57
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.51
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.5
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.5
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.49
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.48
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.48
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.46
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.42
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.4
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.37
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.37
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.36
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.36
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.35
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.35
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.34
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.34
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.33
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.33
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.33
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.31
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.3
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.29
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.28
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.26
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.26
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.26
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.25
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.25
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.24
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.23
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.21
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.19
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.19
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.18
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.18
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.17
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.17
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.17
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.16
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.15
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.14
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.13
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.13
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.12
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.11
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.11
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.09
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.08
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.07
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.06
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.05
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.05
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.04
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.02
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.02
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.02
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.99
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.99
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.98
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.98
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.98
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	96.98
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.98
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.97
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.95
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.94
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.93
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.92
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.92
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	96.92
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.91
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.89
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.88
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	96.86
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.85
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.84
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.82
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.82
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.82
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.82
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.81
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.8
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.79
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.76
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	96.76
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	96.72
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.71
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.69
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	96.67
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.64
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	96.62
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.61
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	96.6
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.58
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.56
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	96.52
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.5
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.49
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	96.49
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.47
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.47
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.46
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.45
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.45
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	96.42
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.39
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.38
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.38
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	96.37
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.36
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.35
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	96.34
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.31
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	96.29
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.29
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.28
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	96.28
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	96.25
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	96.25
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	96.24
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.22
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	96.22
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.21
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.2
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.2
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.18
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.18
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.17
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	96.16
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	96.15
d8faba1	103	Immunoglobulin light chain lambda variable domain,	96.11
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.1
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.1
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.07
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	96.05
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	96.04
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	96.0
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	95.96
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.95
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	95.94
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	95.9
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	95.86
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	95.81
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	95.8
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	95.8
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.73
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	95.72
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	95.7
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	95.68
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	95.67
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	95.65
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	95.54
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	95.54
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	95.51
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	95.49
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.48
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	95.42
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.38
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.34
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	95.33
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	95.3
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.22
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	95.19
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	95.13
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.11
d2hyma1	109	Interferon-alpha/beta receptor beta chain {Human (	95.07
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	95.04
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	94.99
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	94.94
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	94.91

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.7e-16  Score=95.88  Aligned_cols=97  Identities=16%  Similarity=0.247  Sum_probs=73.5

Q ss_pred             eeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         60 ICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        60 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .+...+.. ..+..|+.+.|.|.+.+.|.+ .+.|++++.. .......++......+.|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~~~~~p~~-~~v~~G~~~~l~C~v~g~p~p-~v~W~k~~~~-l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   78 (101)
T d2cqva1           2 QIIQFPED-QKVRAGESVELFGKVTGTQPI-TCTWMKFRKQ-IQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   78 (101)
T ss_dssp             EESCCCCS-EEEETTCCEEEEEEEESSSSC-EEEEEESSSB-CCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             eEEeeCCc-EEEeCCCcEEEEEEEEecCCC-EEEEEeCcee-eccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEEC
Confidence            34433333 678899999999999999888 8999998753 22223334455666778999999999999999999999


Q ss_pred             CceEEeeEEEEEEeCCCCCCCC
Q psy11549        140 IGTQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus       140 ~~~~~~~~~~~v~~~~~p~~p~  161 (261)
                      .|.....  +.|.|..+|.+|.
T Consensus        79 ~G~~~~~--~~l~V~~~P~pP~   98 (101)
T d2cqva1          79 LGSRQAQ--VNLTVVDKPDPPA   98 (101)
T ss_dssp             SCEEECC--EEEEEECSCSCCC
T ss_pred             CCEEEEE--EEEEEEecCCCcC
Confidence            9988774  4555657787764

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.61  E-value=1.1e-14  Score=90.53  Aligned_cols=92  Identities=15%  Similarity=0.139  Sum_probs=69.9

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceE--EeCCceeEEEEecCCCCcCeEEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF--SSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      .+|.+...... ..+..|+.+.|.|.+.+.|.| .+.|++++..  +......+  ...++...|.|.++..+|.|.|+|
T Consensus         3 eaP~f~~~~~~-~~v~~g~~v~l~c~v~g~P~p-~v~W~k~~~~--i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c   78 (98)
T d1g1ca_           3 EAPKIFERIQS-QTVGQGSDAHFRVRVVGKPDP-ECEWYKNGVK--IERSDRIYWYWPEDNVCELVIRDVTGEDSASIMV   78 (98)
T ss_dssp             EEEEEEECCCC-EEEETTSCEEEEEEEEEESCC-EEEEEETTEE--CCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             cCCeEecCCCc-EEEcCCCcEEEEEEEEEecCC-eEEEEeCceE--EeeeeeeEEEeccceEEEEEeccCccccCEEEEE
Confidence            35666655544 678899999999999999988 8999998742  32222222  234456689999999999999999


Q ss_pred             EEEcCCceEEeeEEEEEE
Q psy11549        135 AAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~v~  152 (261)
                      .|.|..|.......+.|.
T Consensus        79 ~a~N~~G~~~~~~~L~V~   96 (98)
T d1g1ca_          79 KAINIAGETSSHAFLLVQ   96 (98)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCcEEEEEEEEEEE
Confidence            999999988776565554

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=4.5e-15  Score=92.08  Aligned_cols=92  Identities=17%  Similarity=0.178  Sum_probs=68.0

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+...+.. ..+.+|+.+.|.|.+.+.|.| .+.|++++.... ......+........|.|.++..+|+|.|+|.|.|
T Consensus         2 P~f~~~p~~-~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~~l~-~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   78 (97)
T d1koaa1           2 PRFIVKPYG-TEVGEGQSANFYCRVIASSPP-VVTWHKDDRELK-QSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN   78 (97)
T ss_dssp             CEEEECCCC-CEEETTSCEEEEEEEECSSCC-EEEEEETTEECC-SBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEE
T ss_pred             CEEEEeCCC-EEEeCCCcEEEEEEEEEcCCC-EEEEEEeeeccc-eeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEE
Confidence            444444433 567899999999999999988 899999874221 12222333455667899999999999999999999


Q ss_pred             CCceEEeeEEEEEEe
Q psy11549        139 AIGTQVTPCLYQVVL  153 (261)
Q Consensus       139 ~~~~~~~~~~~~v~~  153 (261)
                      ..|.......+.|..
T Consensus        79 ~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          79 SYGTKEEIVFLNVTR   93 (97)
T ss_dssp             TTEEEEEEECCEEEC
T ss_pred             CCCEEEEEEEEEEee
Confidence            999887765555543

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=1.1e-14  Score=89.56  Aligned_cols=90  Identities=11%  Similarity=0.144  Sum_probs=69.8

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +|.+..+... +.+..|+++.|.|.+.+.|.| .+.|++++... .......+........|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~i~~~~~~-~~v~~G~~~~l~c~~~g~P~p-~v~W~~~~~~i-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   78 (93)
T d1wiua_           2 KPKILTASRK-IKIKAGFTHNLEVDFIGAPDP-TATWTVGDSGA-ALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVK   78 (93)
T ss_dssp             CCEECCCCCE-EEECSSBCCEEEEEEECCSSC-EEEEECSSSSC-BCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred             CCeEEeCCCc-EEEeCCCeEEEEEEEEEecCC-eEEEEeeeeec-eeeeeeeecccccceeeccccccccccEEEEEEEE
Confidence            4666655554 789999999999999999998 89999987532 22233344555566789999999999999999999


Q ss_pred             cCCceEEeeEEEE
Q psy11549        138 NAIGTQVTPCLYQ  150 (261)
Q Consensus       138 ~~~~~~~~~~~~~  150 (261)
                      |..|.......+.
T Consensus        79 N~~G~~~~~~~l~   91 (93)
T d1wiua_          79 NELGEDEAIFEVI   91 (93)
T ss_dssp             ETTEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEE
Confidence            9999887744443

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.59  E-value=1.5e-14  Score=88.06  Aligned_cols=86  Identities=24%  Similarity=0.343  Sum_probs=65.1

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +|.+...+...+.+.+|+.+.|.|.+.+.|.| .+.|++++.  .+  ...++.....  .|.|.++...|+|.|+|.|.
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p-~v~W~~~~~--~i--~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~   74 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAP-NVVWSHNAK--PL--SGGRATVTDS--GLVIKGVKNGDKGYYGCRAT   74 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCC-CCEEEETTE--EC--CSSSEEEETT--EEEESSCCSTTCEEEEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCC-EEEEEeCCc--cC--ccccEEEeee--eEEECCCChhhCEEEEEEEE
Confidence            35555444333678899999999999999998 899999874  22  3334444333  59999999999999999999


Q ss_pred             cCCceEEeeEEEE
Q psy11549        138 NAIGTQVTPCLYQ  150 (261)
Q Consensus       138 ~~~~~~~~~~~~~  150 (261)
                      |..|.......+.
T Consensus        75 N~~G~~~~~~~l~   87 (89)
T d1biha4          75 NEHGDKYFETLVQ   87 (89)
T ss_dssp             ETTEEEEEEEEEE
T ss_pred             ECCCEEEEEEEEE
Confidence            9999877754443

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.58  E-value=3.5e-14  Score=88.83  Aligned_cols=91  Identities=15%  Similarity=0.233  Sum_probs=68.7

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEEe-CCceeEEEEecCCCCcCeEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSS-GSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +|.+...+.. +.+..|+++.|.|.+.+.|.| .+.|++++..  +.. ....+.. ......|.|.++..+|.|.|+|.
T Consensus         8 ~P~f~~~~~~-~~v~~G~~~~l~C~~~g~P~p-~v~W~k~~~~--i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   83 (102)
T d1fhga_           8 KPYFTKTILD-MEVVEGSAARFDCKVEGYPDP-EVMWFKDDNP--VKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK   83 (102)
T ss_dssp             EEEEEECCCC-EEEETTSCEEEEEEEEEESCC-EEEEEETTEE--CCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEcCCCc-EEEecCCcEEEEEEEEeccCC-eEEEEeeecc--ccceeeEeEEEecCceeeeEecCCCHHhCEEEEEE
Confidence            5666555544 678899999999999999888 8999998742  222 2223333 34466899999999999999999


Q ss_pred             EEcCCceEEeeEEEEEE
Q psy11549        136 AQNAIGTQVTPCLYQVV  152 (261)
Q Consensus       136 ~~~~~~~~~~~~~~~v~  152 (261)
                      |.|..|....+..+.|.
T Consensus        84 a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          84 AVNSLGEATCTAELLVE  100 (102)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEECCcEEEEEEEEEEE
Confidence            99999988776555543

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=4.5e-14  Score=86.31  Aligned_cols=87  Identities=24%  Similarity=0.320  Sum_probs=64.3

Q ss_pred             eeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         57 YAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      ++|.+.......+.+..|+++.|.|.+.+.|.| .+.|++++.....     .+  ......|.|.++..+|+|.|+|.|
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p-~i~W~k~~~~~~~-----~~--~~~~~~L~I~~v~~~D~G~Y~C~a   74 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVP-QIKWRKLDGSQTS-----KW--LSSEPLLHIQNVDFEDEGTYECEA   74 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCC-EEEEEECCSCCSC-----CC--SBSSSEEEECSCCGGGCEEEEEEE
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCC-EEEEEecccccce-----Ee--eeeeeEEEeCCCCccCCEEEEEEE
Confidence            455555433233778899999999999999988 8999987642111     11  122347999999999999999999


Q ss_pred             EcCCceEEeeEEEEE
Q psy11549        137 QNAIGTQVTPCLYQV  151 (261)
Q Consensus       137 ~~~~~~~~~~~~~~v  151 (261)
                      .|..|.......+.|
T Consensus        75 ~N~~G~~~~~~~l~V   89 (91)
T d1cs6a3          75 ENIKGRDTYQGRIII   89 (91)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEE
Confidence            999998777545544

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.57  E-value=2e-14  Score=89.03  Aligned_cols=81  Identities=15%  Similarity=0.279  Sum_probs=61.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.|.| .+.|++++...........+........|.|.++..+|+|.|+|.|.|..|.......
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p-~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   93 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMP-TMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH   93 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCC-EEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCC-EEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence            567899999999999999998 8999998753322222222333344558999999999999999999999998777544


Q ss_pred             EE
Q psy11549        149 YQ  150 (261)
Q Consensus       149 ~~  150 (261)
                      +.
T Consensus        94 l~   95 (97)
T d3dara1          94 LD   95 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.56  E-value=6.2e-14  Score=85.18  Aligned_cols=86  Identities=20%  Similarity=0.318  Sum_probs=66.1

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+...+.. ..+..|+++.|.|.+.+.|.| .+.|++++.  .+. ...++.....  .|.|.++..+|+|.|+|.|.|
T Consensus         2 P~f~~~~~~-~~v~~G~~~~l~C~~~g~P~p-~v~W~k~g~--~i~-~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~N   74 (89)
T d1cs6a4           2 PDWLDVITD-TEADIGSDLRWSCVASGKPRP-AVRWLRDGQ--PLA-SQNRIEVSGG--ELRFSKLVLEDSGMYQCVAEN   74 (89)
T ss_dssp             EEEEECCCC-EEEETTCCEEEECEEEEESCC-EEEEEETTE--ECC-CCSSEEEETT--EEEESSCCGGGCEEEEEEEEE
T ss_pred             CCeEEECCC-EEECCCCcEEEEEEEEEEcCC-EEEEEEeec--ccc-ccceeeeeee--eEEEEeecccCCEEEEEEEEe
Confidence            455544444 678899999999999999988 899999874  232 2334444433  699999999999999999999


Q ss_pred             CCceEEeeEEEEE
Q psy11549        139 AIGTQVTPCLYQV  151 (261)
Q Consensus       139 ~~~~~~~~~~~~v  151 (261)
                      ..|.......+.|
T Consensus        75 ~~G~~~~~~~l~V   87 (89)
T d1cs6a4          75 KHGTVYASAELTV   87 (89)
T ss_dssp             TTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9998877555554

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=9.9e-14  Score=86.41  Aligned_cols=94  Identities=21%  Similarity=0.307  Sum_probs=68.1

Q ss_pred             eeceeecCc-eeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEEeCCceeEEEEecCCCCcCeEEEE
Q psy11549         57 YAPICKSDR-IVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        57 ~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      .||.+.... .....+..|+++.|.|.+.+.|.| .+.|++++....... ...........+.|.|.++..+|+|.|+|
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   80 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEP-TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC   80 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCC-EEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCC-EEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEE
Confidence            366665433 223567789999999999999998 899999875322111 12233344555689999999999999999


Q ss_pred             EEEcCCceEEeeEEEEE
Q psy11549        135 AAQNAIGTQVTPCLYQV  151 (261)
Q Consensus       135 ~~~~~~~~~~~~~~~~v  151 (261)
                      .|.|..|.......+.|
T Consensus        81 ~a~N~~G~~~~~~~l~V   97 (100)
T d1qz1a3          81 IAENKAGEQDASIHLKV   97 (100)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999998877555544

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.52  E-value=7e-14  Score=86.09  Aligned_cols=84  Identities=15%  Similarity=0.290  Sum_probs=64.3

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+...+.. +.+.+|+.+.|.|.+.+.|.|..+.|++++..  +...............|.|.++..+|+|.|+|.|.|
T Consensus         3 P~i~~~p~~-~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~--l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           3 PVLKDQPAE-VLFRENNPTVLECIIEGNDQGVKYSWKKDGKS--YNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CEECCCCSE-EEEETTSCEEECCCEESCCSSCEEEEEESSSB--CCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CEEEecCCc-EEEeCCCeEEEEEEecCCCCeeEEEEEeeeee--eeeecceeeecccceEEEEeccChhcCeEEEEEEEe
Confidence            455544444 77889999999999999987767999998753  333333444444455799999999999999999999


Q ss_pred             CCceEEe
Q psy11549        139 AIGTQVT  145 (261)
Q Consensus       139 ~~~~~~~  145 (261)
                      ..|....
T Consensus        80 ~~G~~~s   86 (94)
T d1biha1          80 PAGVASS   86 (94)
T ss_dssp             TTEEEEC
T ss_pred             CCCEEEE
Confidence            9987543

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.7e-13  Score=84.61  Aligned_cols=93  Identities=22%  Similarity=0.333  Sum_probs=67.0

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc---CCce--EEeCCceeEEEEecCC-CCcCeE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV---GSER--FSSGSRGSMLRYTPVT-ELDYGT  131 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---~~~~--~~~~~~~~~l~i~~~~-~~d~g~  131 (261)
                      ||.+...... ..+.+|+.+.|.|.+.+.|++..+.|++++.......   ...+  +......+.|.|.++. .+|+|.
T Consensus         2 PP~i~~~~~~-~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           2 PPRVKAVKSS-EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             SCCCEESCSE-EEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CceEEEcCCc-EEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            4555544444 6688999999999999998876799998764322211   1222  2344556789999998 579999


Q ss_pred             EEEEEEcCCceEEeeEEEEE
Q psy11549        132 LSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus       132 y~C~~~~~~~~~~~~~~~~v  151 (261)
                      |+|.|.|..|.......|.|
T Consensus        81 Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEEE
Confidence            99999999998877544443

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.49  E-value=4.1e-14  Score=86.51  Aligned_cols=78  Identities=17%  Similarity=0.267  Sum_probs=62.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      +.+..|+++.|.|.+.+.|.| .+.|++++.. ........+........|.|.++..+|+|.|+|.|.|..|.......
T Consensus         9 ~~v~~G~~~~l~C~~~g~P~p-~v~W~~~g~~-l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   86 (91)
T d1tnna_           9 MTVYEGESARFSCDTDGEPVP-TVTWLRKGQV-LSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFT   86 (91)
T ss_dssp             EECSSSSCCCEEEECCCSSCC-CCEEESSSST-TCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEE
T ss_pred             EEEeCCCcEEEEEEEEEEeCC-eEEEEEeecc-cccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEE
Confidence            678899999999999999988 8999998743 22223334555666778999999999999999999999998766433

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.8e-13  Score=81.08  Aligned_cols=78  Identities=15%  Similarity=0.202  Sum_probs=60.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+..|+.+.|.|.+.+.|.| .+.|++++.. .   ...........+.|.|.++..+|+|.|+|.|.|..|.......
T Consensus        11 ~~~~~G~~v~l~C~~~g~p~p-~i~W~~~~~~-~---~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~   85 (90)
T d1vcaa2          11 YLAQIGDSVSLTCSTTGCESP-FFSWRTQIDS-P---LNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ   85 (90)
T ss_dssp             EEEETTSCEEEEEEEESCSSC-EEEEEETTCC-C---CSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred             EEEECCCEEEEEEeccCCCCc-eEEEEecCcc-c---eeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEE
Confidence            556789999999999999988 8999987642 1   1222333445568999999999999999999999998777544


Q ss_pred             EEE
Q psy11549        149 YQV  151 (261)
Q Consensus       149 ~~v  151 (261)
                      +.|
T Consensus        86 v~V   88 (90)
T d1vcaa2          86 VEI   88 (90)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.48  E-value=6.7e-13  Score=80.70  Aligned_cols=76  Identities=20%  Similarity=0.321  Sum_probs=56.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+.+|+++.|.|.+.+.+++..+.|++++....   .. +....+  ..|.|.++..+|+|.|+|.|.|..|.......
T Consensus        12 ~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~---~~-~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~   85 (89)
T d1gl4b_          12 QSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL---PS-RAMDFN--GILTIRNVQPSDAGTYVCTGSNMFAMDQGTAT   85 (89)
T ss_dssp             EEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCC---CT-TEEEET--TEEEECSCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EEEeCCCcEEEEEEccCCCCCCEEEEecCCceee---cc-ccEeec--eEEEEecCCcccCEEEEEEEEECCCEEEEEEE
Confidence            6788999999999998554433899999874211   12 222222  26999999999999999999999998777544


Q ss_pred             EE
Q psy11549        149 YQ  150 (261)
Q Consensus       149 ~~  150 (261)
                      +.
T Consensus        86 l~   87 (89)
T d1gl4b_          86 LH   87 (89)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=2e-13  Score=83.52  Aligned_cols=81  Identities=22%  Similarity=0.290  Sum_probs=60.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+.+|+.+.|.|.+.+.|.| .+.|++++..... ....++..... ..|.|.++...|+|.|+|.|.|..+.......
T Consensus        11 ~~v~~G~~~~l~C~v~g~p~p-~v~W~~~~~~i~~-~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~   87 (92)
T d1epfa2          11 QEFKEGEDAVIVCDVVSSLPP-TIIWKHKGRDVIL-KKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRILARGEINFKD   87 (92)
T ss_dssp             EECCTTSCEEECCEEECSSCC-EEEEEETTEEGGG-GCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEEGGGTEEEEEE
T ss_pred             EEEeCCCcEEEEEEEeecCCC-eEEEEEcCccccc-ccceeeeeeee-eeEEECCCCHHhCEEEEEEEEECcCCEEEEEE
Confidence            678899999999999999988 8999998753222 22333333332 36999999999999999999998776665545


Q ss_pred             EEEE
Q psy11549        149 YQVV  152 (261)
Q Consensus       149 ~~v~  152 (261)
                      +.|.
T Consensus        88 i~Vi   91 (92)
T d1epfa2          88 IQVI   91 (92)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.8e-13  Score=85.03  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=68.9

Q ss_pred             EEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCC-ceEE--e--CCceeEEEEecCCCCcC
Q psy11549         55 VKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ERFS--S--GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        55 V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~--~--~~~~~~l~i~~~~~~d~  129 (261)
                      |.++|.+.....    ...+....+.|.+.|.|.| .+.|++++..  +.... ..+.  .  ....+.|.|.++..+|+
T Consensus         2 V~~PP~i~~~~~----~~~~~~~~i~~~v~G~P~P-~v~W~~n~~~--i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   74 (105)
T d1wwca_           2 VYYPPRVVSLEE----PELRLEHCIEFVVRGNPPP-TLHWLHNGQP--LRESKIIHVEYYQEGEISEGCLLFNKPTHYNN   74 (105)
T ss_dssp             CCCCCCCCCCCC----CCCCCEEEEEEEEECSSCC-EEEEEETTEE--CCCSSSEEEEEEECSSEEEEEEEEESCCGGGC
T ss_pred             EEcCCeeEEeCC----CEEEEEEEEEEEEEEeCCC-eEEEEeCccc--cCCCcceeeeEEeecccceEEEEEeecccccc
Confidence            556776654322    2245567788999999998 8999998742  22222 1111  1  22345799999999999


Q ss_pred             eEEEEEEEcCCceEEeeEEEEEEeCCCCCCCC
Q psy11549        130 GTLSCAAQNAIGTQVTPCLYQVVLAGKPQPPQ  161 (261)
Q Consensus       130 g~y~C~~~~~~~~~~~~~~~~v~~~~~p~~p~  161 (261)
                      |.|+|.|.|..|....  .+.+.+..+|.|+.
T Consensus        75 G~Y~C~a~N~~G~~~~--~~~v~V~~~P~P~~  104 (105)
T d1wwca_          75 GNYTLIAKNPLGTANQ--TINGHFLKEPFPVD  104 (105)
T ss_dssp             EEEEEEEEETTEEEEE--EEEECCSCCCCCSC
T ss_pred             eEEEEEEEcCCCEEEE--EEEEEEEeCCCCCC
Confidence            9999999999998877  56677778887754

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.48  E-value=3.8e-13  Score=85.17  Aligned_cols=93  Identities=19%  Similarity=0.248  Sum_probs=64.7

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc--CC-ce---------EEeCCceeEEEEecCC
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV--GS-ER---------FSSGSRGSMLRYTPVT  125 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--~~-~~---------~~~~~~~~~l~i~~~~  125 (261)
                      +|.+....+....+..|+++.|.|.+.+.|.| .+.|++++.......  .. ..         .......+.|.|.++.
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQP-HIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCC-EEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCC-eEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            46665543333788999999999999999988 899998653211110  00 00         0112335689999999


Q ss_pred             CCcCeEEEEEEEcCCceEEeeEEEEE
Q psy11549        126 ELDYGTLSCAAQNAIGTQVTPCLYQV  151 (261)
Q Consensus       126 ~~d~g~y~C~~~~~~~~~~~~~~~~v  151 (261)
                      .+|.|.|+|.|.|..|....+..+.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999999998888655544

>d2vkwa2 b.1.2.1 (A:601-693) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3e-13  Score=82.97  Aligned_cols=87  Identities=18%  Similarity=0.178  Sum_probs=71.9

Q ss_pred             CCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       157 p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      |.+|..+.+....++.+.|.|.++.+++.|+ .|.+.|+..+...............+.|.+  |.++..|+|+|.|.|.
T Consensus         1 P~~P~~~~~~~~~~~sv~l~W~~p~~~~~~I~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~N~   78 (93)
T d2vkwa2           1 PSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKS--LDWNAEYEVYVVAENQ   78 (93)
T ss_dssp             CCCCEEEEEECTTSSCEEEEEECCCCTTSCCCEEEEEEEETTSCCCCCEEECTTCCEEEECS--CCTTCEEEEEEEEEET
T ss_pred             CCCCccCEeEEcCCCEEEEEeeCCCCCcCceEEEEEEeeecCcceeeeeeccCCceEEEEec--cccceEEEEEEEEEcC
Confidence            6788888888888999999999988888885 499998876654322233445668999999  9999999999999999


Q ss_pred             CCcCCceeee
Q psy11549        236 KGRSLPVIWD  245 (261)
Q Consensus       236 ~G~~~~s~~~  245 (261)
                      .|.|+++...
T Consensus        79 ~G~s~ps~~~   88 (93)
T d2vkwa2          79 QGKSKAAHFV   88 (93)
T ss_dssp             TEECCCEEEE
T ss_pred             CCCcCCEeEE
Confidence            9999999754

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=8.8e-13  Score=79.97  Aligned_cols=76  Identities=21%  Similarity=0.282  Sum_probs=57.9

Q ss_pred             EEEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         68 IVGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        68 ~~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      ...+..|+++.|.|.+. +.|.+ .+.|++.+..    +..  .......+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus        12 ~~~~~~G~~~~l~C~~~~g~p~p-~v~W~~~~~~----~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s   84 (90)
T d1gsma1          12 VVAVALGASRQLTCRLACADRGA-SVQWRGLDTS----LGA--VQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT   84 (90)
T ss_dssp             EEEEETTCCEEEEEEECCSSTTC-EEEEESSTTT----TCC--EEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             eEEEEeCCcEEEEEEecCCCCcc-EEEEEEeeee----eee--eeccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEE
Confidence            37788999999999986 55666 8999876532    111  2233445689999999999999999999998887775


Q ss_pred             EEEE
Q psy11549        147 CLYQ  150 (261)
Q Consensus       147 ~~~~  150 (261)
                      ..+.
T Consensus        85 ~~l~   88 (90)
T d1gsma1          85 VQLL   88 (90)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            4444

>d1uema_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.3e-13  Score=87.30  Aligned_cols=100  Identities=26%  Similarity=0.385  Sum_probs=77.1

Q ss_pred             EeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccEEEE
Q psy11549        152 VLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       152 ~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      .+.+.|.+|.++.+.....+.+.|.|.++.+++.++. |.++++...... .|  .........++|.+  |.++..|.|
T Consensus        11 ~~~~~P~pP~~~~v~~~~~~sv~l~W~p~~~~~~~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~v~~--L~p~t~Y~f   87 (117)
T d1uema_          11 DLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSN-SWQTVANHVKTTLYTVRG--LRPNTIYLF   87 (117)
T ss_dssp             CSCCSCBCCCCCEEEEECSSCEEEECCCCBCSSSCCCEEEEEEEETTTEE-EEEEEEEEECSSEEEECS--CCTTCEEEE
T ss_pred             eeCccCcCCCCCEEEEccCCEEEEEEECCCcCCCCeEEEEEEEeccCCce-eeEEeccccccccceECC--CCCCCEEEE
Confidence            4557888999999988889999999998777777754 888877655442 23  22223457899999  999999999


Q ss_pred             EEEEEcCCCcCCceeeee-eeeccccc
Q psy11549        229 VISGVNAKGRSLPVIWDD-FSMSGAHY  254 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~-~~~~~~~~  254 (261)
                      +|.|.|..|.+++|...+ ++++...+
T Consensus        88 rV~A~N~~G~s~~S~~s~~v~t~~~~P  114 (117)
T d1uema_          88 MVRAINPQGLSDPSPMSDPVRTQDSGP  114 (117)
T ss_dssp             EEEEEETTEEEEECCCCCCEECCCSSC
T ss_pred             EEEEEeCCcCCCCcCCCcCEEeCCCCc
Confidence            999999999999888764 55554443

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=5.4e-13  Score=80.00  Aligned_cols=75  Identities=13%  Similarity=0.189  Sum_probs=55.1

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      |.+...+.. ..+..|+.+.|.|.+.+.|.|.++.|++++..  +...        ....+.|.....+|+|.|+|.|.|
T Consensus         2 P~f~~~P~~-~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~--i~~~--------~~~~~~l~~~~~~d~G~Y~C~A~N   70 (85)
T d1rhfa2           2 PFFTVEPKD-LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTK--IGGP--------APSPSVLNVTGVTQSTMFSCEAHN   70 (85)
T ss_dssp             CEEEECCCC-EEECTTCCEEEEEEEECSSSCCEEEEEETTEE--CSCS--------EESSEEEEECCCSSCEEEEEEEEE
T ss_pred             CcEEEeCCc-EEEcCCCEEEEEEEEecCCcceEEEEEECCEE--CCCC--------CCcceEEecCCccccEEEEEEEEc
Confidence            444444444 67889999999999999988768999998742  2111        112356666777899999999999


Q ss_pred             CCceEE
Q psy11549        139 AIGTQV  144 (261)
Q Consensus       139 ~~~~~~  144 (261)
                      ..|...
T Consensus        71 ~~G~~~   76 (85)
T d1rhfa2          71 LKGLAS   76 (85)
T ss_dssp             TTEEEE
T ss_pred             CCCcEE
Confidence            998654

>d1x3da1 b.1.2.1 (A:8-112) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.5e-13  Score=83.41  Aligned_cols=97  Identities=20%  Similarity=0.160  Sum_probs=78.0

Q ss_pred             eCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEE
Q psy11549        153 LAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVIS  231 (261)
Q Consensus       153 ~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~  231 (261)
                      ...+|.+|..+.+.....+.+.|+|.++.+++.++. |.++++..................+.+.+  |.++..|.|+|.
T Consensus         7 ~~~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~--L~p~t~Y~frV~   84 (105)
T d1x3da1           7 LSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITK--LSPAMGCKFRLS   84 (105)
T ss_dssp             CCSCCCCCCCCEEEEEETTEEEEECCCCCCCSSCEEEEEEEECTTTSSSCCEEEEEESCSEEEEES--CCTTCEEEEECC
T ss_pred             CCCCCcCCCCCEEEEccCCEEEEEEECCCCCcCccEEEEEEEecCCCcceeEEEecCCccEEEecC--CcCCcEEEEEEE
Confidence            347788999999998899999999999888888865 77777654444322244444568899999  999999999999


Q ss_pred             EEcCCCcCCceeeeeeeecc
Q psy11549        232 GVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       232 a~N~~G~~~~s~~~~~~~~~  251 (261)
                      |.|..|.|.+|..+.+++.+
T Consensus        85 A~N~~G~s~~S~~~~~~T~g  104 (105)
T d1x3da1          85 ARNDYGTSGFSEEVLYYTSG  104 (105)
T ss_dssp             EEESSCBCCCCCCEEEECSC
T ss_pred             EECCCeEcCCCCcEEEECCC
Confidence            99999999999998887643

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.2e-13  Score=80.47  Aligned_cols=72  Identities=13%  Similarity=0.176  Sum_probs=56.5

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+.+|++++|.|.+.+.|+| .+.|++++.. ..        .  ....|.|.++..+|+|.|+|.|.|..|.....  +
T Consensus        10 ~v~~G~~~~L~C~~~g~p~P-~i~W~~~~~~-~~--------~--~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~--~   75 (84)
T d2nxyb2          10 HLLQGQSLTLTLESPPGSSP-SVQCRSPRGK-NI--------Q--GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK--I   75 (84)
T ss_dssp             CEETTCCEEEEEECCTTCCC-EEEEECTTCC-EE--------E--ESSEEEESSCCGGGCEEEEEEEEETTEEEEEE--E
T ss_pred             EEECCCeEEEEEEeEcCCch-heEEEeeccc-ce--------e--eeeeeeeeecccccccEEEEEEEeCCCEEEEE--E
Confidence            46799999999999999998 8999986632 11        1  12268999999999999999999999887774  4


Q ss_pred             EEEeCC
Q psy11549        150 QVVLAG  155 (261)
Q Consensus       150 ~v~~~~  155 (261)
                      .|.|..
T Consensus        76 ~v~V~~   81 (84)
T d2nxyb2          76 DIVVLA   81 (84)
T ss_dssp             EECEEC
T ss_pred             EEEEEe
Confidence            444433

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.5e-12  Score=82.84  Aligned_cols=84  Identities=10%  Similarity=0.045  Sum_probs=60.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCC--CceeEEEEcCCccccccCCceEE------e--CCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         69 VGASRSESVDIHCAVEADPP--ARSFKWKFNNSGETLDVGSERFS------S--GSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~~~~~~~~------~--~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      +.+..|++++|.|.+.+.|.  .+++.|++++..........++.      .  ....+.|.|.++..+|+|.|+|.|.|
T Consensus        10 ~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   89 (113)
T d2dava1          10 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTY   89 (113)
T ss_dssp             CEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEEC
T ss_pred             EEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEEe
Confidence            67889999999999999884  22899999764322222222221      1  12245799999999999999999999


Q ss_pred             CCceEEeeEEEEEE
Q psy11549        139 AIGTQVTPCLYQVV  152 (261)
Q Consensus       139 ~~~~~~~~~~~~v~  152 (261)
                      ..|.......+.|.
T Consensus        90 ~~G~~~~~~~L~V~  103 (113)
T d2dava1          90 KDKFDSCSFDLEVH  103 (113)
T ss_dssp             SSCEEEECCEEEEE
T ss_pred             CCCEEEEEEEEEEE
Confidence            99988775555543

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.8e-12  Score=81.17  Aligned_cols=83  Identities=11%  Similarity=-0.001  Sum_probs=61.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCC---CceeEEEEcCCccccccCCceEEe--------CCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPP---ARSFKWKFNNSGETLDVGSERFSS--------GSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~~--------~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +.+..|++++|.|.+.+.|.   | .+.|++++..........++..        ....+.|.|.++...|+|.|+|.|.
T Consensus        14 ~~v~~G~~v~l~C~v~g~p~~~~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   92 (110)
T d2avga1          14 GEVTVGGSITFSARVAGASLLKPP-VVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVS   92 (110)
T ss_dssp             EEEETTSEEEEEEEEECCSCSSSC-EEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCCEEEEEEEE
T ss_pred             EEEECCCCEEEEEeecCCCCCCCC-EEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHCcEEEEEEE
Confidence            67889999999999999884   4 7999987643222222222211        1224579999999999999999999


Q ss_pred             cCCceEEeeEEEEEE
Q psy11549        138 NAIGTQVTPCLYQVV  152 (261)
Q Consensus       138 ~~~~~~~~~~~~~v~  152 (261)
                      |..|.......+.|.
T Consensus        93 N~~G~~~~~~~L~V~  107 (110)
T d2avga1          93 TKDKFDCSNFNLTVH  107 (110)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             ECCCeEEEEEEEEEE
Confidence            999998885555443

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.42  E-value=7.2e-13  Score=80.07  Aligned_cols=76  Identities=9%  Similarity=0.134  Sum_probs=56.0

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+.+|++++|.|.+.+.+++..+.|++++....         .......|.|.++..+|+|.|+|.|.|..+...+ ..+
T Consensus        11 ~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~---------~~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S-~~v   80 (88)
T d2fcba2          11 EFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKK---------FSRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSS-KPV   80 (88)
T ss_dssp             EECTTCCEEEEEEEGGGCCCEEEEEEETTEEEE---------EESSCCEEEETTCCGGGCEEEEEEEEETTEEEEC-CCE
T ss_pred             eEecCCeEEEEEEecCCCCCcEEEEEeeccccc---------ccccccccccCccCHHHCCeEEEEEEeCCCCEEe-eeE
Confidence            367999999999998766655899999874211         1122346999999999999999999998876543 245


Q ss_pred             EEEeCC
Q psy11549        150 QVVLAG  155 (261)
Q Consensus       150 ~v~~~~  155 (261)
                      .|.|..
T Consensus        81 ~l~V~~   86 (88)
T d2fcba2          81 TITVQA   86 (88)
T ss_dssp             EEEECC
T ss_pred             EEEEeC
Confidence            555543

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=3e-12  Score=79.02  Aligned_cols=83  Identities=25%  Similarity=0.297  Sum_probs=59.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE---eCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS---SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+..|+++.|.|.+.+.|++..+.|++++. ........++.   .....+.|.|.++..+|+|.|+|.|.|..|....
T Consensus        10 ~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g-~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   88 (97)
T d1epfa1          10 GEISVGESKFFLCQVAGDAKDKDISWFSPNG-EKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   88 (97)
T ss_dssp             EEEETTCCEEEEEEECCCSCCCEEEEECTTS-CEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             EEEccCCcEEEEEEEEeccCCCEEEEEEeee-eeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEE
Confidence            5677999999999999988644899998553 22222233322   2344568999999999999999999999886432


Q ss_pred             eEEEEEEe
Q psy11549        146 PCLYQVVL  153 (261)
Q Consensus       146 ~~~~~v~~  153 (261)
                       ..+.|.+
T Consensus        89 -~tv~l~V   95 (97)
T d1epfa1          89 -ATVNVKI   95 (97)
T ss_dssp             -EEEEEEE
T ss_pred             -EEEEEEE
Confidence             2444443

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=7.5e-13  Score=80.19  Aligned_cols=78  Identities=10%  Similarity=0.006  Sum_probs=58.0

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+.+|+.++|.|.+.+.+++..+.|++++....  .       ......|.|.++..+|+|.|+|.|.|..+... +..+
T Consensus        11 ~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~--~-------~~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~-S~~v   80 (89)
T d1f2qa2          11 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK--Y-------WYENHNISITNATVEDSGTYYCTGKVWQLDYE-SEPL   80 (89)
T ss_dssp             EEETTSCEEEEEEEGGGCCEEEEEEEETTEECC--S-------CCCSSEEEESSCCGGGCEEEEEEEEETTEEEE-CCCE
T ss_pred             eEeCCCEEEEEEEecCCCCCeEEEEEEeeeccc--c-------ccccceEEEeeeeeecCcEEEEEEEeCCCCeE-eeeE
Confidence            467999999999998877766999999874221  1       11233699999999999999999999876543 3355


Q ss_pred             EEEeCCCC
Q psy11549        150 QVVLAGKP  157 (261)
Q Consensus       150 ~v~~~~~p  157 (261)
                      .|.|..+|
T Consensus        81 ~i~V~~~P   88 (89)
T d1f2qa2          81 NITVIKAP   88 (89)
T ss_dssp             EEEEECSC
T ss_pred             EEEEEeCC
Confidence            56665555

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2e-12  Score=80.93  Aligned_cols=83  Identities=16%  Similarity=0.220  Sum_probs=59.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE--e--CCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--S--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      ..+..|+++.|.|.+.+.|.++.+.|++++.............  .  ......|.|.++..+|+|.|+|.|.|..|...
T Consensus        13 ~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   92 (104)
T d2aw2a1          13 HSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIE   92 (104)
T ss_dssp             EEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEE
Confidence            6788999999999999998533899999875433322222221  1  12244699999999999999999999988754


Q ss_pred             e-eEEEEE
Q psy11549        145 T-PCLYQV  151 (261)
Q Consensus       145 ~-~~~~~v  151 (261)
                      . +..+.|
T Consensus        93 s~~~~l~V  100 (104)
T d2aw2a1          93 SHSTTLYV  100 (104)
T ss_dssp             CCCEEEEE
T ss_pred             EEEEEEEE
Confidence            3 334433

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.5e-12  Score=80.21  Aligned_cols=94  Identities=17%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             EeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCc-eEEe-----CCceeEEEEecCCCCcC
Q psy11549         56 KYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSS-----GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        56 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~-----~~~~~~l~i~~~~~~d~  129 (261)
                      .++|.+.....    ...+....+.|.+.|.|.| ++.|++++.  .+..... .+..     ....+.|.|.++...|+
T Consensus         2 ~~pP~it~~~~----~~~~~~~~i~~~v~G~P~P-~i~W~~~g~--~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   74 (103)
T d1wwbx_           2 HFAPTITFLES----PTSDHHWCIPFTVKGNPKP-ALQWFYNGA--ILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN   74 (103)
T ss_dssp             CCCCCCCCCCC----CCCCCEEEEEEEEECSSCC-EEEEEETTE--EECCCSSEEEEEEEECSSEEEEEEEEESCCGGGC
T ss_pred             ccCCeeEEcCC----CccceeEEEEEEEEEeCCC-EEEEEECCE--EeeeeeeeeeeecccccccceEEEEECCCCHHhC
Confidence            45666543222    2367788899999999998 899999874  2322221 1111     12245799999999999


Q ss_pred             eEEEEEEEcCCceEEeeEEEEEEeCCCCC
Q psy11549        130 GTLSCAAQNAIGTQVTPCLYQVVLAGKPQ  158 (261)
Q Consensus       130 g~y~C~~~~~~~~~~~~~~~~v~~~~~p~  158 (261)
                      |.|+|.|.|..|....  .+.|.+..+|.
T Consensus        75 G~Y~C~a~N~~G~~~~--~~~v~V~~~P~  101 (103)
T d1wwbx_          75 GDYTLIAKNEYGKDEK--QISAHFMGWPG  101 (103)
T ss_dssp             EEEEEEEECSSCEEEE--EEEECCSCCCC
T ss_pred             ceEEEEEeccCCEEEE--EEEEEEEeCCC
Confidence            9999999999998877  56677766664

>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=2.3e-12  Score=81.15  Aligned_cols=90  Identities=18%  Similarity=0.320  Sum_probs=71.2

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccce--eE-EEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNL--LV-NLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~--~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .+|.+|.++.+.......+.|.|.++.+++.++ .|.+.|+.......  .. .........++|.+  |.++..|.|+|
T Consensus         9 ~pP~~P~~~~v~~~~~~sv~l~W~p~~~~g~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--L~p~t~Y~frV   86 (108)
T d1x4za1           9 SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITG--LEKGISYKFRV   86 (108)
T ss_dssp             CCCCCCCCCEEEECCSSEEEEECCCCCCTTSCCCEEEEEEEESSSCCCCEEEEEEECTTCCEEEEES--CCTTCEEEEEE
T ss_pred             CCCccCCCCEEEEccCCEEEEEEECCCCCCCccEEEEEEEEecCCCCceEEEEEeecCCccEEEECC--CCCCCEEEEEE
Confidence            578888888888888999999999877888885 49998886544321  11 23334567899999  99999999999


Q ss_pred             EEEcCCCcCCceeeee
Q psy11549        231 SGVNAKGRSLPVIWDD  246 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~  246 (261)
                      .|.|.+|.|++|...+
T Consensus        87 ~A~N~~G~s~~S~pS~  102 (108)
T d1x4za1          87 RALNMLGESEPSAPSR  102 (108)
T ss_dssp             EEEETTEECCCCCCCC
T ss_pred             EEECCCcCCCCCCCCC
Confidence            9999999998887543

>d1cfba1 b.1.2.1 (A:610-709) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.40  E-value=1.7e-12  Score=80.73  Aligned_cols=91  Identities=13%  Similarity=0.116  Sum_probs=71.1

Q ss_pred             eCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        153 LAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       153 ~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      |.+.|.+|.++.+.. ..+.+.|+|.++.+++.++ .|.++|+.........  .........+.+.+  |.++..|.|+
T Consensus         2 V~dvP~~P~~~~v~~-~~~sv~lsW~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~p~t~Y~fr   78 (100)
T d1cfba1           2 VQDVPNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQ--MSPWANYTFR   78 (100)
T ss_dssp             CCCCCCCCEEEEEEE-CSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEEE--CCSSEEEEEE
T ss_pred             cccCCCcCcCcEEEE-cCCEEEEEEcCCcccccceEEEEEEEecCCCCceeeEEeeecCCceEEEEec--CCCCCEEEEE
Confidence            567899999988874 5678999999887877775 5999888765543222  22223457889999  9999999999


Q ss_pred             EEEEcCCCcCCceeeee
Q psy11549        230 ISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~  246 (261)
                      +.|.|..|.|++|....
T Consensus        79 V~A~n~~G~g~~S~~s~   95 (100)
T d1cfba1          79 VIAFNKIGASPPSAHSD   95 (100)
T ss_dssp             EEEEETTEECCCCCCCC
T ss_pred             EEEEeCCcCCCCcCCCc
Confidence            99999999999887654

>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.1e-13  Score=83.12  Aligned_cols=97  Identities=13%  Similarity=0.184  Sum_probs=73.2

Q ss_pred             EEeCCCCCCCCcceEE--eecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEE
Q psy11549        151 VVLAGKPQPPQNCSVR--NETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       151 v~~~~~p~~p~~~~v~--~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      +.+...|.+|....+.  ......+.|+|.++.+++.++. |.++|+..+...... .........++|.+  |.++..|
T Consensus         5 l~v~~~P~~P~~p~~~~~~~~~~sv~l~W~~P~~~~~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y   82 (108)
T d1wf5a1           5 LRVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKG--LVPARSY   82 (108)
T ss_dssp             SSCCCCCCCCSSCEEEECSSSTTEEEEECCCCCCCSSCEEEEEEEEECTTCCCEEEESSCCTTCCEEEEES--CCTTCEE
T ss_pred             cEEecCCCCCCCCEEEEEeccCCEEEEEEECCCCCCCccEEEEEEEEeccCCceEEeeeecCCccEEEECC--CCCCCEE
Confidence            4566778877765443  4567889999998888888865 999888765542222 22233456899999  9999999


Q ss_pred             EEEEEEEcCCCcCCceeeeeeee
Q psy11549        227 RVVISGVNAKGRSLPVIWDDFSM  249 (261)
Q Consensus       227 ~~~~~a~N~~G~~~~s~~~~~~~  249 (261)
                      .|+|.|.|..|.|.+|..+...+
T Consensus        83 ~frV~A~N~~G~s~~S~~~~~~t  105 (108)
T d1wf5a1          83 QFRLCAVNDVGKGQFSKDTERVS  105 (108)
T ss_dssp             EEEEEEEESSCEEEECCCCSCEE
T ss_pred             EEEEEEEcCCcCCCCcCCcCCEE
Confidence            99999999999999988876544

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=6.3e-13  Score=81.05  Aligned_cols=79  Identities=18%  Similarity=0.262  Sum_probs=57.4

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      +|.+...... +.+.+|+++.|.|.+.+.+++.++.|++++..  +..........+  ..|.|.++..+|+|.|+|.|.
T Consensus         6 ~P~~~~~~~~-v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~--l~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~   80 (93)
T d1n26a1           6 CPAQEVARGV-LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPA--AGSHPSRWAGMG--RRLLLRSVQLHDSGNYSCYRA   80 (93)
T ss_dssp             CCCCCCCTTE-EEECTTCCEEEECTTSCTTCCSEEEEEEECSS--SSCCCEEEEEES--SEEEECSCCGGGCEEEEEESS
T ss_pred             CCcEEeCCCC-EEEeCCCcEEEEEEeecCCCCceEEEEEcccc--ccceeeEEecCC--CEEEECCCChhcCEEEEEEEC
Confidence            3444444444 77889999999999998876558999998743  323332232222  379999999999999999998


Q ss_pred             cCCc
Q psy11549        138 NAIG  141 (261)
Q Consensus       138 ~~~~  141 (261)
                      |..+
T Consensus        81 n~~~   84 (93)
T d1n26a1          81 GRPA   84 (93)
T ss_dssp             SSCS
T ss_pred             Cccc
Confidence            7543

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-12  Score=84.95  Aligned_cols=83  Identities=13%  Similarity=0.260  Sum_probs=61.5

Q ss_pred             EEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc----------------------------CCceEEeCCceeEE
Q psy11549         68 IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV----------------------------GSERFSSGSRGSML  119 (261)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~----------------------------~~~~~~~~~~~~~l  119 (261)
                      .+.+..|+.++|.|.+.+.|.| .+.|++++.......                            ....+......+.|
T Consensus        18 ~v~v~~G~~v~L~C~v~G~P~p-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L   96 (130)
T d1gxea_          18 TIVVVAGNKLRLDVPISGDPAP-TVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIF   96 (130)
T ss_dssp             EEEESSSSCCCCEEECCSBSCC-EEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEEE
T ss_pred             CEEEEcCCeEEEEEEEEEecCC-eEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCceEEEEECCCEEEE
Confidence            4778999999999999999988 899998754211100                            00111233445689


Q ss_pred             EEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549        120 RYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus       120 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      .|.++..+|+|.|+|.|.|..|.....  +.|.|
T Consensus        97 ~I~~v~~~D~G~Y~C~a~N~~G~~~~~--~~l~V  128 (130)
T d1gxea_          97 TVEGAEKEDEGVYTVTVKNPVGEDQVN--LTVKV  128 (130)
T ss_dssp             ECSCCCTTTCEEEEEEEECSSCEEEEE--EEEEE
T ss_pred             EECcCChhcCEEEEEEEEECCCEEEEE--EEEEE
Confidence            999999999999999999999987774  44444

>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Myosin binding protein C, fast-type
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=1.1e-12  Score=81.05  Aligned_cols=89  Identities=21%  Similarity=0.270  Sum_probs=69.4

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecCC-CCCCCeE-EEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPGY-DGGLPQT-FTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~~-~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      ||.+|.++.+.......+.|+|.++. +++.++. |.+.++..+...... .........++|.+  |.++..|.|+|.|
T Consensus         1 PP~~P~~~~v~~~~~~sv~l~W~pP~~~~~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~v~~--L~~~~~Y~frV~A   78 (98)
T d1x5ya1           1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKD--LPTGARILFRVVG   78 (98)
T ss_dssp             CCCCCEEEEEEEECSSEEEEEEECCSCCCSSCCCEEEEEEEETTCCCCEESSSSCBSSSEEEEEC--CCTTCCEEEEEEE
T ss_pred             CCCCCcCcEEEEccCCEEEEEEECCCcCCCCCceEEEEEEEecCcceeEEeeeecCceeEEEECC--CcCCeEEEEEEEE
Confidence            68899999998888999999999754 4456654 999988876653211 12233457899999  9999999999999


Q ss_pred             EcCCCcCCceeeee
Q psy11549        233 VNAKGRSLPVIWDD  246 (261)
Q Consensus       233 ~N~~G~~~~s~~~~  246 (261)
                      .|..|.|++|...+
T Consensus        79 ~n~~G~s~~s~~~~   92 (98)
T d1x5ya1          79 VNIAGRSEPATLLQ   92 (98)
T ss_dssp             EETTEECCCCCCSS
T ss_pred             ECCCcCCCCcCCCC
Confidence            99999998876543

>d1x4xa1 b.1.2.1 (A:8-100) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.7e-12  Score=78.64  Aligned_cols=91  Identities=8%  Similarity=0.002  Sum_probs=71.7

Q ss_pred             CCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       157 p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      |.+|..+++.......+.|.|.++.+++.++ .|.+.++......  +.........+.|.+  |.++..|.|+|.|.|.
T Consensus         1 P~~P~~~~v~~~s~~si~l~W~~p~~~~~~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~n~   76 (93)
T d1x4xa1           1 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSM--QICYCGPGLSYEIKG--LSPATTYYCRVQALSV   76 (93)
T ss_dssp             CCCCCCCCCEEEETTEEEEECCCCSCSSSCCCEEEEEEESSTTSC--CEEEEESCSEEEEES--CCSSCEEEEEEEEECS
T ss_pred             CcCCCCCEEEEeCCCeEEEEEEecccCCCeeEEEEEEEccCCCcc--eEeecCCccEEEEcc--cceeeEEEEEEEEEEC
Confidence            4566666677777999999999876666664 5989887655542  233334568899999  9999999999999999


Q ss_pred             CCcCCceeeeeeeecc
Q psy11549        236 KGRSLPVIWDDFSMSG  251 (261)
Q Consensus       236 ~G~~~~s~~~~~~~~~  251 (261)
                      .|.|.+|..+.++++.
T Consensus        77 ~G~s~~S~~~~~~Tpp   92 (93)
T d1x4xa1          77 VGAGPFSEVVACVTPP   92 (93)
T ss_dssp             SCCCCBCCCEEEECCC
T ss_pred             CcCcCCCCcEEEEeCC
Confidence            9999999999887653

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.38  E-value=2.1e-12  Score=79.68  Aligned_cols=74  Identities=18%  Similarity=0.272  Sum_probs=56.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEE--eCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFS--SGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      +.+..|+++.|.|.+.+.|.+ .+.|++++..... ....++.  .......|.|.++..+|+|.|+|.|.|..|...
T Consensus        13 ~~~~~G~~v~l~C~~~g~P~~-~v~W~k~g~~i~~-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   88 (97)
T d1biha3          13 MMAKAGDVTMIYCMYGSNPMG-YPNYFKNGKDVNG-NPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQ   88 (97)
T ss_dssp             EEEETTSCEEEEEEEECSSCC-CCEEEETTEECCC-CTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCE
T ss_pred             EEEecCCeEEEEEEEEEecCC-EEEEEEeeeeccc-cceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEE
Confidence            667899999999999999888 7999998753221 1222222  223345799999999999999999999998754

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.2e-12  Score=77.38  Aligned_cols=73  Identities=16%  Similarity=0.297  Sum_probs=56.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCc-eEEe--CCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSE-RFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      +.+..|+.+.|.|.+.+.|.| .+.|++++..  +..... .+..  ......|.|.++..+|+|.|+|.|.|..|...
T Consensus         6 ~~v~~G~~~~l~C~v~g~p~p-~v~W~k~g~~--l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   81 (91)
T d1rhfa1           6 LTVSQGQPVKLNCSVEGMEEP-DIQWVKDGAV--VQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEI   81 (91)
T ss_dssp             EEEETTCCEEEEEEEESCSSC-CEEEEETTEE--CCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEE
T ss_pred             EEEcCCCeEEEEEEEEecCCc-eEEEEEeecc--cccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEE
Confidence            678899999999999999988 8999998742  222222 2222  22345799999999999999999999988653

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.37  E-value=1.3e-12  Score=80.74  Aligned_cols=85  Identities=29%  Similarity=0.576  Sum_probs=59.2

Q ss_pred             eeceeecCceeEEEeeC---CCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEE
Q psy11549         57 YAPICKSDRIVIVGASR---SESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        57 ~~p~~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      ++|.+...+.. ..+..   ++.+.|.|.+.+.|.| .+.|++++..... .....+.... ...|.|..+..+|+|.|+
T Consensus         3 ~~P~f~~~P~~-~~~~~g~~~~~v~l~C~~~g~P~p-~v~W~~ng~~i~~-~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~   78 (97)
T d1cs6a1           3 YGPVFEEQPAH-TLFPEGSAEEKVTLTCRARANPPA-TYRWKMNGTELKM-GPDSRYRLVA-GDLVISNPVKAKDAGSYQ   78 (97)
T ss_dssp             EEEEEEECCCC-EEEETTCSCCEEEECCEEEEESCC-EEEEEETTEECCC-STTSSEEEET-TEEEEESCCHHHHCEEEE
T ss_pred             cCCEEEEeCCC-EEEECccCCCeEEEEEEEEEeCCC-EEEEEEeeeeccC-CCCceEEeee-eeEEEEecccccCCEEEE
Confidence            45665544443 33444   4789999999999988 8999998753222 2223333333 246788888999999999


Q ss_pred             EEEEcCCceEEe
Q psy11549        134 CAAQNAIGTQVT  145 (261)
Q Consensus       134 C~~~~~~~~~~~  145 (261)
                      |.|.|..|...+
T Consensus        79 C~a~N~~G~~~S   90 (97)
T d1cs6a1          79 CVATNARGTVVS   90 (97)
T ss_dssp             EEEEETTEEEEC
T ss_pred             EEEEECCCEEEE
Confidence            999999997643

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.2e-12  Score=82.91  Aligned_cols=84  Identities=20%  Similarity=0.382  Sum_probs=59.5

Q ss_pred             EeeCCCcEEEEEEEe-eCCCCceeEEEEcCCccccc-------cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         70 GASRSESVDIHCAVE-ADPPARSFKWKFNNSGETLD-------VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .+..|+++.|.|.+. +.|.+ .+.|++++......       ............+.|.|.++..+|+|.|+|.|.|..|
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   91 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPS-EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG   91 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCC-EEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred             EEecCCeEEEEEEeecCCCCC-EEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence            467899999999986 56666 89999986422111       0111223334455799999999999999999999999


Q ss_pred             eEEeeEEEEEEeC
Q psy11549        142 TQVTPCLYQVVLA  154 (261)
Q Consensus       142 ~~~~~~~~~v~~~  154 (261)
                      ....+..+.+.|.
T Consensus        92 ~~~~s~~v~l~V~  104 (110)
T d1f97a2          92 TAMRSEAAHMDAV  104 (110)
T ss_dssp             CCEECCCEEEEEE
T ss_pred             cEEEEEEEEEEEE
Confidence            8766545555553

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=8e-12  Score=76.89  Aligned_cols=91  Identities=13%  Similarity=0.100  Sum_probs=59.9

Q ss_pred             eceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCce-EEeCCceeEEEEecCCCCcCeEEEEEE
Q psy11549         58 APICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER-FSSGSRGSMLRYTPVTELDYGTLSCAA  136 (261)
Q Consensus        58 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~  136 (261)
                      .|.+.. ... +.+..|+++.|.|.+.+.|.|....|..+............ .........|.|.++..+|+|.|+|.|
T Consensus         2 ~P~f~~-~~~-~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   79 (96)
T d2c9aa1           2 TPHFLR-IQN-VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI   79 (96)
T ss_dssp             SCEECC-CCC-EEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEE
T ss_pred             cCeecc-cCC-EEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEE
Confidence            355543 333 77899999999999999987733334433332222111111 222333457999999999999999999


Q ss_pred             EcCCceEEee-EEEE
Q psy11549        137 QNAIGTQVTP-CLYQ  150 (261)
Q Consensus       137 ~~~~~~~~~~-~~~~  150 (261)
                      .|..|..... +.+.
T Consensus        80 ~N~~G~~~s~~a~L~   94 (96)
T d2c9aa1          80 RTEGGVGISNYAELV   94 (96)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEEE
Confidence            9999986543 3443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=2.6e-12  Score=80.13  Aligned_cols=91  Identities=18%  Similarity=0.295  Sum_probs=63.1

Q ss_pred             eecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEE------eCCceeEEEEecCCCCcCeEEE
Q psy11549         61 CKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFS------SGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        61 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~------~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +..+... +.+.+|+++.|.|.+.+.|.| .+.|++.+....... ......      .....+.|.|.++..+|+|.|+
T Consensus         4 V~t~~~~-v~v~~G~~v~l~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           4 VYTAQSD-VQVPENESIKLTCTYSGFSSP-RVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             EECSCSE-EEEETTCCEEEECEEESCSSE-EEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             EEccCCc-EEEeCCCEEEEEEEcCCCCCC-eEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            3333444 778899999999999998887 899998654211110 000000      0111236999999999999999


Q ss_pred             EEEEcCCceEEeeEEEEEEe
Q psy11549        134 CAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus       134 C~~~~~~~~~~~~~~~~v~~  153 (261)
                      |.+.|..|.......+.|.|
T Consensus        82 C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEEE
Confidence            99999998877765666654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.5e-12  Score=79.01  Aligned_cols=87  Identities=18%  Similarity=0.213  Sum_probs=61.5

Q ss_pred             ceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceE---EeC--------CceeEEEEecCCCC
Q psy11549         59 PICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERF---SSG--------SRGSMLRYTPVTEL  127 (261)
Q Consensus        59 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~---~~~--------~~~~~l~i~~~~~~  127 (261)
                      |.+..+....+.+..|+.+.|.|.+.+.|.| .+.|++++............   ...        ...+.|.|.++..+
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p-~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSD-IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTC-EEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCC-eEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            4444444444678899999999999999998 89999977432211111110   000        11457999999999


Q ss_pred             cCe-EEEEEEEcCCceEEee
Q psy11549        128 DYG-TLSCAAQNAIGTQVTP  146 (261)
Q Consensus       128 d~g-~y~C~~~~~~~~~~~~  146 (261)
                      |.| .|+|.|.|..|.....
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~  100 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAY  100 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEE
Confidence            999 5999999999987774

>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.2e-12  Score=79.75  Aligned_cols=95  Identities=8%  Similarity=-0.038  Sum_probs=75.0

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      .+|.+|..+.+.......+.|.|.++...+.+ ..|.++|+..+...............++|.+  |.++..|.|++.|.
T Consensus         2 a~P~~p~~~~~~~~s~~si~v~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~   79 (98)
T d1x5la1           2 AAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSG--LKPGTRYVFQVRAR   79 (98)
T ss_dssp             CCCCCCCCEECSCBCSSCEEEEECCCSCCCSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECS--CCTTCEEEECEEEE
T ss_pred             cCCCCCCceEEEeccCCEEEEEEECCCCCCCCEEEEEEEeecccccceeeEEecCCceEEEECC--CCCCCEEEEEEEEE
Confidence            46788888888888999999999976555555 4699988876544322233333458899999  99999999999999


Q ss_pred             cCCCcCCceeeeeeeecc
Q psy11549        234 NAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       234 N~~G~~~~s~~~~~~~~~  251 (261)
                      |..|.|.+|..+.+++..
T Consensus        80 n~~G~g~~S~~v~~~T~~   97 (98)
T d1x5la1          80 TSAGCGRFSQAMEVETGK   97 (98)
T ss_dssp             ETTEECCCCCCEEEECCC
T ss_pred             cCCCCcCCCCCEEEEcCC
Confidence            999999999999887653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=2.3e-12  Score=79.37  Aligned_cols=83  Identities=23%  Similarity=0.460  Sum_probs=60.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+.+|+.++|.|.+.+ +++ .+.|++++..  +.. ..++........|.|.++..+|.|.|+|.|.|..|..... .
T Consensus        13 ~~v~~g~~v~l~C~~~~-~~~-~v~W~~~~~~--l~~-~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~-~   86 (96)
T d1l6za2          13 TTVKELDSVTLTCLSND-IGA-NIQWLFNSQS--LQL-TERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSN-S   86 (96)
T ss_dssp             SEECTTSCEEEEECCCC-SSC-EEEEEETTEE--CCC-CTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECC-C
T ss_pred             eEEeCCCeEEEEEccCC-CCC-CEEEEEeeee--ccc-ccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEE-e
Confidence            34679999999999866 444 8999998742  222 2233344445579999999999999999999998866432 4


Q ss_pred             EEEEeCCCC
Q psy11549        149 YQVVLAGKP  157 (261)
Q Consensus       149 ~~v~~~~~p  157 (261)
                      +.+.|..+|
T Consensus        87 ~~L~V~~~P   95 (96)
T d1l6za2          87 IKLDIIFDP   95 (96)
T ss_dssp             CEEEECCSC
T ss_pred             EEEEEEcCC
Confidence            566666665

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.4e-13  Score=79.60  Aligned_cols=68  Identities=18%  Similarity=0.129  Sum_probs=53.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCL  148 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~  148 (261)
                      ..+.+|+.+.|.|.+.+.|.| .+.|++++.. ...             .+.+.+++.+|+|.|.|.|.|..|.......
T Consensus        14 ~~~~~G~~~~l~C~a~G~P~P-~v~W~k~g~~-~~~-------------~~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~   78 (84)
T d2oz4a3          14 WTWPENSQQTPMCQAWGNPLP-ELKCLKDGTF-PLP-------------IGESVTVTRDLEGTYLCRARSTQGEVTREVT   78 (84)
T ss_dssp             EEEETTCEECCCCCCEEESCC-EEEEEETTTE-ECC-------------TTSCEECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EEEeCCCEEEEEEEEeEcCcc-EEEEEEeecc-cee-------------eeeeeccccCCCCEEEEEEEcCCCEEEEEEE
Confidence            678899999999999999999 8999998742 111             1224567789999999999999998776444


Q ss_pred             EEE
Q psy11549        149 YQV  151 (261)
Q Consensus       149 ~~v  151 (261)
                      +.|
T Consensus        79 l~V   81 (84)
T d2oz4a3          79 VNV   81 (84)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            433

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.5e-13  Score=83.10  Aligned_cols=76  Identities=18%  Similarity=0.235  Sum_probs=58.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCe-EEEEEEEcCCceEEeeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYG-TLSCAAQNAIGTQVTPC  147 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~~~  147 (261)
                      ..+.+|+.+.|.|.+.+.|.| .+.|++++....  . ............|.|.++..+|.| .|+|.|.|..|....+.
T Consensus        12 ~~v~~G~~v~l~C~~~g~P~p-~v~W~~~~~~~~--~-~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s~   87 (92)
T d2ifga1          12 ASVDVGDDVLLRCQVEGRGLE-QAGWILTELEQS--A-TVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV   87 (92)
T ss_dssp             SCCBTTCCEEEEEEEECSSCC-CCCEEESCCCSS--E-EECCCCCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEE
T ss_pred             EEEeCCCEEEEeeeccCCCCc-EEEEEECCceee--e-eeeeeeeccceeEEEccccccccceEEEEEEEcCCCEEEEEE
Confidence            557899999999999999988 899999874221  1 111223444568999999999999 69999999999876643


Q ss_pred             E
Q psy11549        148 L  148 (261)
Q Consensus       148 ~  148 (261)
                      .
T Consensus        88 ~   88 (92)
T d2ifga1          88 Q   88 (92)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.34  E-value=3.1e-12  Score=77.34  Aligned_cols=66  Identities=11%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      .+.+|++++|.|.+.+.+++..+.|++++.....         ......|.|.++..+|+|.|+|.|.|..+...
T Consensus        13 ~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~---------~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~   78 (89)
T d1fnla2          13 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY---------FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVS   78 (89)
T ss_dssp             EEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE---------EEECCCEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             eEccCCeEEEEEEecCCCCCcEEEEEEcccccce---------eccccccEECccceeccceEEEEEEeCCCCeE
Confidence            3679999999999987666668999998742111         11223689999999999999999999887654

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.34  E-value=1.9e-12  Score=81.12  Aligned_cols=76  Identities=20%  Similarity=0.252  Sum_probs=57.5

Q ss_pred             EEEeeCCCcEEEEEEE-eeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         68 IVGASRSESVDIHCAV-EADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        68 ~~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      .+.+.+|+.+.|.|.+ .+.|.+ .+.|++++....... ..+.........|.|.++..+|+|.|+|.|.|..|....
T Consensus        13 ~v~v~eG~~~~l~C~~~~~~p~~-~v~W~k~g~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   89 (105)
T d1cs6a2          13 PVKITEGWGVMFTCSPPPHYPAL-SYRWLLNEFPNFIPA-DGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITK   89 (105)
T ss_dssp             CEEEETTSCEEECCCCCSEESCC-EEEEEESSTTCBCCC-CSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             CEEEeCCCeEEEEEEccCCCCCC-EEEEEEeeccccccc-cceeeeecCCCEEeecccccccCcEEEEEEEECCCCEEE
Confidence            3778999999999997 567777 899999885433322 233333333447999999999999999999998776554

>d1x5ga1 b.1.2.1 (A:8-110) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.3e-12  Score=78.47  Aligned_cols=92  Identities=12%  Similarity=0.140  Sum_probs=73.1

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      ..|.+|.++.+.......+.|+|.++...+.+ ..|.+.|+..+...  +.........+.|.+  |.+++.|.|++.|.
T Consensus         9 ~vP~~P~~l~v~~~s~~si~l~W~~P~~~~g~i~~Y~v~~~~~~~~~--~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~   84 (103)
T d1x5ga1           9 QLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDK--EQDVDVSSHSYTING--LKKYTEYSFRVVAY   84 (103)
T ss_dssp             SCCCCCSSCEEEEEETTEEEEECCCCSCCSSCCSEEEEEEEETTCCC--CCCEEECSSEEEECS--CCTTCEEEEEEEEE
T ss_pred             CCcccCCCcEEEEccCCEEEEEEECCcCCCccEEEEEEEEEeCCCce--eEEEeccccEEecCC--CCCCCEEEEEEEEE
Confidence            45788999999988899999999976655555 45999888766552  211223457899999  99999999999999


Q ss_pred             cCCCcCCceeeeeeeec
Q psy11549        234 NAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       234 N~~G~~~~s~~~~~~~~  250 (261)
                      |..|.|.+|..+.+++.
T Consensus        85 n~~G~g~~S~~v~v~T~  101 (103)
T d1x5ga1          85 NKHGPGVSTPDVAVRTL  101 (103)
T ss_dssp             CSSCCCCBCCCCCEECC
T ss_pred             cCCcCcCCCCCEEEEcC
Confidence            99999999988877654

>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.4e-11  Score=78.77  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=75.5

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .+.|.+|.++.+.....+.+.|.|.++...+.+ ..|.+.|+.........  .........++|.+  |.++..|.|++
T Consensus        18 ~~~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V   95 (117)
T d1wfoa1          18 DDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATG--LKPESVYLFRI   95 (117)
T ss_dssp             CCCCCCCCCCEEEEECSSEEEEECCCCSCCCSCCCEEEEEEEESSCCCSCCCEEEECTTCCEEEEES--CCSSSEEEEEE
T ss_pred             CCCCcCCCCcEEEEecCCEEEEEEECCCCCCCceEEEeeeeeeccCCCceEeEEecCCceEEEEECC--CCCCCEEEEEE
Confidence            356889999999888899999999976554445 55999887755543222  34445668899999  99999999999


Q ss_pred             EEEcCCCcCCceeeeeeeec
Q psy11549        231 SGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~~~~  250 (261)
                      .|.|..|.|++|..+.+++.
T Consensus        96 ~A~n~~G~g~~S~~~~~tT~  115 (117)
T d1wfoa1          96 TAQTRKGWGEAAEALVVTTE  115 (117)
T ss_dssp             EEECSSCEEEEEEEEEECCS
T ss_pred             EEECCCcCCCCcCCEEEECC
Confidence            99999999999998887654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.5e-12  Score=76.87  Aligned_cols=69  Identities=16%  Similarity=0.213  Sum_probs=52.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ..+..|+.+.|.|.+. .|++ .+.|++++...........+...+....|.|.++..+|+|.|+|.|.|.
T Consensus        16 ~~v~~G~~v~l~c~v~-~p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~   84 (94)
T d1pd6a_          16 YQVSKGHKIRLTVELA-DHDA-EVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE   84 (94)
T ss_dssp             EEEETTSCEEEEEECS-SSSS-CCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE
T ss_pred             EEECcCCeEEEEEEEC-CCCc-eEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE
Confidence            5688999999999985 4666 8999998853222222233445566778999999999999999999763

>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=8e-12  Score=76.96  Aligned_cols=92  Identities=13%  Similarity=0.156  Sum_probs=70.0

Q ss_pred             CCCCCcceEEeecCCeEEEEeecCC-CCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEc
Q psy11549        157 PQPPQNCSVRNETTSSVHISCTPGY-DGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVN  234 (261)
Q Consensus       157 p~~p~~~~v~~~~~~~~~l~c~~~~-~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N  234 (261)
                      |.+|.++.+.......+.|.|.++. +++.++. |.++++..................++|.+  |.++..|.|+|.|.|
T Consensus         1 P~~P~~~~v~~~~~~si~l~W~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~v~~--L~p~t~Y~~rV~A~n   78 (96)
T d1x5xa1           1 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKN--LRRSTKYKFKVIAYN   78 (96)
T ss_dssp             CCCCCCCEEEEECSSEEEEECCCCSSCCSSSSCEEEEEECCSSSSCCCEEEEEESCSEEEEES--CCSSCEEEEEEEEEC
T ss_pred             CccCCCCEEEEecCCEEEEEEEeecccCcceEeeeEEEeeeccceeeeEEeecCCCCEEEECC--CCCCCEEEEEEEEEc
Confidence            5677778888888999999999753 4555555 66666554444323333344567899999  999999999999999


Q ss_pred             CCCcCCceeeeeeeec
Q psy11549        235 AKGRSLPVIWDDFSMS  250 (261)
Q Consensus       235 ~~G~~~~s~~~~~~~~  250 (261)
                      ..|.|++|..+.+++.
T Consensus        79 ~~G~s~~S~~~~~~T~   94 (96)
T d1x5xa1          79 SEGKSNPSEVVEFTTC   94 (96)
T ss_dssp             SSCEEEECCCEEEECC
T ss_pred             CCcEeCCCCCEEEEeC
Confidence            9999999998887654

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.2e-13  Score=88.37  Aligned_cols=98  Identities=22%  Similarity=0.369  Sum_probs=67.5

Q ss_pred             EEEEeeceeecCceeEEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEe------CCceeEEEEecCCC
Q psy11549         53 LRVKYAPICKSDRIVIVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSS------GSRGSMLRYTPVTE  126 (261)
Q Consensus        53 l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~------~~~~~~l~i~~~~~  126 (261)
                      |+|..||.+..+..  ..+.+|+.+.|.|.+.+.+++..+.|++++..... ....++..      ....+.|.|.++..
T Consensus         2 L~V~~Pp~i~~~~~--~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~-~~~~~~~~~~~~~~~~~~s~L~I~~v~~   78 (115)
T d2crya1           2 LTVNGPPIISSTQT--QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES-GTSGRYTVETISTEEGVISTLTISNIVR   78 (115)
T ss_dssp             CCCCSSCCEEEECC--CCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECS-EEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             eEEecCCEEecCCC--EEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEee-eeeeeEeeeeeccccCcEEEEEEeccch
Confidence            55667776654332  55779999999999999766558999987743221 11122211      22235799999999


Q ss_pred             Cc-CeEEEEEEEcCCceEEeeEEEEEEeCC
Q psy11549        127 LD-YGTLSCAAQNAIGTQVTPCLYQVVLAG  155 (261)
Q Consensus       127 ~d-~g~y~C~~~~~~~~~~~~~~~~v~~~~  155 (261)
                      .| +|.|+|.|.|..|....  .+.|.|..
T Consensus        79 ~D~~G~Y~C~A~N~~G~~~~--~~~L~V~~  106 (115)
T d2crya1          79 ADFQTIYNCTAWNSFGSDTE--IIRLKEQG  106 (115)
T ss_dssp             HHHHSCEEEEEECSSCEEEE--EECCCCSC
T ss_pred             hcCCeEEEEEEEECCCeEEE--EEEEEEEC
Confidence            99 69999999999998877  44455543

>d1x5aa1 b.1.2.1 (A:8-101) Ephrin type-A receptor 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-A receptor 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=3e-11  Score=73.76  Aligned_cols=90  Identities=10%  Similarity=0.094  Sum_probs=71.7

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCC--CCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYD--GGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      ++|..|.++++.......+.|+|.++..  .+..+.|.+.+...+...  ...  .....++|.+  |.++..|.|+|.|
T Consensus         1 a~p~~p~~L~~~~~~~~si~vsW~~p~~~~~~~~i~Y~i~~~~~~~~~--~~~--~~~t~~~i~~--L~p~t~Y~~rV~A   74 (94)
T d1x5aa1           1 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEW--HQM--VLEPRVLLTK--LQPDTTYIVRVRT   74 (94)
T ss_dssp             CCCCCSCCCCEEEEETTEEEEECCCCCSSCCSSCCEEEEEEECSSCEE--EEE--ESSSEEEEES--CCSSCEEEEEEEE
T ss_pred             CcCCCCCceEEEEcCCCEEEEEEecccCCCCCcEEEEEEEEecCCceE--EEe--eccCEEEECC--CCCCCEEEEEEEE
Confidence            3678889999999999999999997532  233456888887765441  122  2357899999  9999999999999


Q ss_pred             EcCCCcCCceeeeeeeec
Q psy11549        233 VNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~~  250 (261)
                      .|..|.|.+|..+.+++.
T Consensus        75 ~n~~G~g~~S~~~~~~T~   92 (94)
T d1x5aa1          75 LTPLGPGPFSPDHEFRTS   92 (94)
T ss_dssp             ECSSSCCCCCCCEEEECC
T ss_pred             EcCCcCcCCCCCEEEEeC
Confidence            999999999999888765

>d2djsa1 b.1.2.1 (A:8-102) Ephrin type-B receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ephrin type-B receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.4e-11  Score=75.71  Aligned_cols=92  Identities=11%  Similarity=0.040  Sum_probs=71.0

Q ss_pred             CCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       157 p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      |..|..+.+.....+.+.|.|.++...+.++. |.+.++..................+.|.+  |.++..|.|+|.|.|.
T Consensus         1 P~~~~~l~~~~~t~~si~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~n~   78 (95)
T d2djsa1           1 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDG--LRPGMVYVVQVRARTV   78 (95)
T ss_dssp             CCCCSCCEEEEECSSEEEEECCCCSCCSSCEEEEEEEEEETTSCSTTCEEEEESSSEEEEES--CCTTCEEEEEEEEEES
T ss_pred             CCCCCccEEEeecCCEEEEEEEECCCCCcceEEeeeeeeeeccCcceeEeecCCccEEEEee--cCCccEEEEEEEEEcC
Confidence            44555678888889999999997665555654 88888776554323333334557899999  9999999999999999


Q ss_pred             CCcCCceeeeeeeec
Q psy11549        236 KGRSLPVIWDDFSMS  250 (261)
Q Consensus       236 ~G~~~~s~~~~~~~~  250 (261)
                      .|.|++|..+.+++.
T Consensus        79 ~G~g~~S~~~~~~T~   93 (95)
T d2djsa1          79 AGYGKFSGKMCFQTL   93 (95)
T ss_dssp             SCEEEECCCEEEECC
T ss_pred             CCCCCCCCCEEEEeC
Confidence            999999999887654

>d1bqua1 b.1.2.1 (A:5-99) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.9e-12  Score=78.77  Aligned_cols=86  Identities=19%  Similarity=0.070  Sum_probs=68.0

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      .||.+|.++++.......+.|+|.++.+++.+..|.+.++..+...... .........+.+.+  |.++..|.|+|.|.
T Consensus         2 ~PP~~P~n~~~~~~~~~si~~~W~p~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~~~~Y~f~V~A~   79 (95)
T d1bqua1           2 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS--TVYFVNIEVWVEAE   79 (95)
T ss_dssp             CCCCCCEEEEEEEETTSCCEEEEECCSCCSSCCEEEEEEEETTEECCCEECCSSCTTEEECSSC--CCTTSCEEEEEEEE
T ss_pred             cCcCCCeeeEEEEccCCEEEEEEeCcccCCCceEEEEEEEEcccceeEeecccccceeeeeeee--cCCCcEEEEEEEEE
Confidence            5789999999998889999999999888888888999988765543222 22233334566667  99999999999999


Q ss_pred             cCCCcCCce
Q psy11549        234 NAKGRSLPV  242 (261)
Q Consensus       234 N~~G~~~~s  242 (261)
                      |.+|.++.+
T Consensus        80 N~~G~s~S~   88 (95)
T d1bqua1          80 NALGKVTSD   88 (95)
T ss_dssp             ETTEEEECC
T ss_pred             eCCccccCC
Confidence            999988643

>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2e-11  Score=76.70  Aligned_cols=94  Identities=18%  Similarity=0.159  Sum_probs=70.3

Q ss_pred             CCCCCCCcce-EEeecCCeEEEEeecCC-CCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEE
Q psy11549        155 GKPQPPQNCS-VRNETTSSVHISCTPGY-DGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVIS  231 (261)
Q Consensus       155 ~~p~~p~~~~-v~~~~~~~~~l~c~~~~-~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~  231 (261)
                      +.|.+|.... +.....+.+.|.|.++. +++.+. .|.++++..................+.|.+  |+++..|.|+|.
T Consensus         9 ~~P~~P~~~~~~~~~~~~sv~l~W~~P~~~~g~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~rV~   86 (107)
T d2crma1           9 DKPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDR--LNPGCFYRLRVY   86 (107)
T ss_dssp             CCCCCCCCCEEEEEEETTEEEEECCCCTTCCSSCCCEEEEEEEESSSSCCCEEEECSSCSEEEECS--CCTTSCEEEEEE
T ss_pred             CCCcCCCCCEEEeeecCCEEEEEEEECccCCcceEEEEEEEEEeecCCCcEEEeecCCccEEEEec--cCCCCEEEEEEE
Confidence            5677776643 34456889999999654 455564 488887765544322244445668899999  999999999999


Q ss_pred             EEcCCCcCCceeeeeeeec
Q psy11549        232 GVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       232 a~N~~G~~~~s~~~~~~~~  250 (261)
                      |.|..|.|.+|..+.++++
T Consensus        87 A~n~~G~s~~S~~v~v~Tp  105 (107)
T d2crma1          87 CISDGGQSAVSESLLVQTP  105 (107)
T ss_dssp             EEETTEECCCCCCCCCCCC
T ss_pred             EECCCcCcCCCCcEEEECC
Confidence            9999999999998887765

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.4e-12  Score=80.77  Aligned_cols=84  Identities=19%  Similarity=0.358  Sum_probs=59.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC-CceEEeC------CceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG-SERFSSG------SRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +.+.+|+++.|.|.+.+.|.| .+.|++++........ .......      .....|.|.++..+|+|.|+|.|.|..|
T Consensus        14 v~v~~g~~v~L~C~~~g~p~p-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~G   92 (105)
T d1nbqa1          14 VRIPENNPVKLSCAYSGFSSP-RVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG   92 (105)
T ss_dssp             CCEETTCCCEEECEEESCSSE-EEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTS
T ss_pred             EEEeCCCeEEEEEEeCCCCCC-eeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEECCC
Confidence            567899999999999999887 8999987642211110 0011000      0123699999999999999999999999


Q ss_pred             eEEeeEEEEEEe
Q psy11549        142 TQVTPCLYQVVL  153 (261)
Q Consensus       142 ~~~~~~~~~v~~  153 (261)
                      .......+.|.|
T Consensus        93 ~~~~~~~v~v~V  104 (105)
T d1nbqa1          93 NSYGEVKVKLIV  104 (105)
T ss_dssp             SCEECCEEECCE
T ss_pred             CEEEEEEEEEEE
Confidence            887755555543

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-12  Score=82.26  Aligned_cols=83  Identities=19%  Similarity=0.386  Sum_probs=58.2

Q ss_pred             EEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCccccccC------CceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETLDVG------SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ..+..|+.++|.|.+. +.|.+ .+.|++++........      ..........+.|.|.++..+|.|.|+|.|.|..|
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G   90 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPS-EYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYG   90 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCC-EEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSS
T ss_pred             CEEecCCcEEEEEEeecCCCCC-EEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCC
Confidence            3467899999999985 66666 8999998753221111      11112222345799999999999999999999999


Q ss_pred             eEEeeEEEEEE
Q psy11549        142 TQVTPCLYQVV  152 (261)
Q Consensus       142 ~~~~~~~~~v~  152 (261)
                      ....+..+.|.
T Consensus        91 ~~~~s~~v~v~  101 (104)
T d1nbqa2          91 TPMTSNAVRME  101 (104)
T ss_dssp             CCEECCCBCCE
T ss_pred             ceEEEEEEEEE
Confidence            87665444443

>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Type I titin module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.3e-11  Score=76.05  Aligned_cols=89  Identities=25%  Similarity=0.293  Sum_probs=67.9

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecC-CCCCCCeE-EEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPG-YDGGLPQT-FTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~-~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      ||.+|..+.+.....+.+.|+|.++ .+++.++. |.+.++......... .........++|.+  |.+++.|+|+|.|
T Consensus         2 Pp~pP~~p~~~~~t~~sv~lsW~~P~~~~g~~i~~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~frV~A   79 (104)
T d1bpva_           2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSG--LTEDAAYEFRVIA   79 (104)
T ss_dssp             CCCCCCCCEEEEEETTEEEEECCCCSCCTTCCCSCCEEEEEETTSCCCEECCCSCCCSSEEEECS--CCSSCCEEEEEEE
T ss_pred             CCCCCCCCEEEEecCCEEEEEEEeccccCcceEEEEEEEeecccccceeEEEeeccceeEEEEcC--CCCCCEEEEEEEE
Confidence            6778888888778899999999965 45666654 778777755553222 23344567899999  9999999999999


Q ss_pred             EcCCCc-CCceeeee
Q psy11549        233 VNAKGR-SLPVIWDD  246 (261)
Q Consensus       233 ~N~~G~-~~~s~~~~  246 (261)
                      .|..|. +++|....
T Consensus        80 ~n~~G~~s~~S~~s~   94 (104)
T d1bpva_          80 KNAAGAISPPSEPSD   94 (104)
T ss_dssp             ECTTSCEEEEEEEEE
T ss_pred             EECCCCCCCCcCCCC
Confidence            999996 77777664

>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.9e-11  Score=75.22  Aligned_cols=91  Identities=14%  Similarity=0.152  Sum_probs=66.4

Q ss_pred             CCCCCcceEEe-ecCCeEEEEeecCC-CCCCCeE-EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        157 PQPPQNCSVRN-ETTSSVHISCTPGY-DGGLPQT-FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       157 p~~p~~~~v~~-~~~~~~~l~c~~~~-~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      |.++....+.. .....+.|+|.++. +++.++. |.++++..+..... .........++|.+  |.+++.|.|+|.|.
T Consensus         2 P~p~~pp~~~~~~~~~sv~l~W~~P~~~gg~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~v~~--L~p~t~Y~frV~A~   78 (97)
T d2crza1           2 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPR-EVYQGSEVECTVSS--LLPGKTYSFRLRAA   78 (97)
T ss_dssp             CCCCCCCEECSCCCSSEEEEECCCCSCCTTSCCCEEEEEEECTTSCCCE-EEEEESCSEEEEES--CCTTCEEEECCEEE
T ss_pred             cCcCCCCEEeeeeeCCEEEEEEeCCCcCCCCceeEEEEEEEcCcCCcee-EeecCCceEEEEcC--CCCCEEEEEEEEEe
Confidence            34433334432 34688999999654 5566654 99998876655322 22333457899999  99999999999999


Q ss_pred             cCCCcCCceeeeeeeec
Q psy11549        234 NAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       234 N~~G~~~~s~~~~~~~~  250 (261)
                      |..|.|.+|..+.+++.
T Consensus        79 N~~G~s~~S~~~~~~T~   95 (97)
T d2crza1          79 NKMGFGPFSEKCDITTA   95 (97)
T ss_dssp             CSSCBCCCCCCEEEECC
T ss_pred             cCCeEcCCcCCCeEEeC
Confidence            99999999999887654

>d1qg3a1 b.1.2.1 (A:1126-1217) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.2e-11  Score=73.01  Aligned_cols=89  Identities=16%  Similarity=0.236  Sum_probs=71.7

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      .+|.++.+.......+.|+|.++  .+....|.+.|+..................+.|.+  |.+++.|.|++.|.|..|
T Consensus         3 ~aP~n~~~~~~s~~si~l~W~~p--~~~~~~Y~i~y~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~n~~G   78 (92)
T d1qg3a1           3 GAPQNPNAKAAGSRKIHFNWLPP--SGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTN--LYPYCDYEMKVCAYGAQG   78 (92)
T ss_dssp             CCCEEEEEEECSTTCEEEEEECC--SSCCCEEEEEEEETTSCGGGCEEEEESSSEEEECS--CCTTCEEEEEEEEECSSC
T ss_pred             CcCCCCEEEEccCCEEEEEEEec--CCCccceEEeeeeccccccEEEEecCCccEEEECC--CCCCcEEEEEEEEEeCCc
Confidence            57888888888999999999983  44456799988876555433333344567899999  999999999999999999


Q ss_pred             cCCceeeeeeeec
Q psy11549        238 RSLPVIWDDFSMS  250 (261)
Q Consensus       238 ~~~~s~~~~~~~~  250 (261)
                      .|.+|..+.++++
T Consensus        79 ~g~~S~~~~~~T~   91 (92)
T d1qg3a1          79 EGPYSSLVSCRTH   91 (92)
T ss_dssp             BCCCCCCEEEECC
T ss_pred             CcCCCCCEEEEcC
Confidence            9999999988764

>d1x5fa1 b.1.2.1 (A:8-114) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.7e-11  Score=74.91  Aligned_cols=95  Identities=12%  Similarity=0.049  Sum_probs=75.6

Q ss_pred             CCCCCCCCcceEEeecCCeEEEEeecCC-CCCCC-eEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        154 AGKPQPPQNCSVRNETTSSVHISCTPGY-DGGLP-QTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       154 ~~~p~~p~~~~v~~~~~~~~~l~c~~~~-~~~~p-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      ...|.+|.++.+.......+.|+|.++. +.+.+ ..|.++++..+.....+ .........++|.+  |.++..|.|++
T Consensus         8 ~~~P~~P~~l~~~~~~~~sv~lsW~~P~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~p~t~Y~~rV   85 (107)
T d1x5fa1           8 GPLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQN--LMPATVYIFRV   85 (107)
T ss_dssp             CCCCCCCEEEEEEEECSSCEEEEEECCSSCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEECS--CCTTCEEEEEE
T ss_pred             CCCCcCCCccEEEEecCCEEEEEEECCccCCCCceEEEEEEEEeCCCCceEEEEEeCCCccEEEecC--CCCCCEEEEEE
Confidence            3568899999998889999999999753 33444 56888887755554333 44455668899999  99999999999


Q ss_pred             EEEcCCCcCCceeeeeeeec
Q psy11549        231 SGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~~~~  250 (261)
                      .|.|..|.|.+|..+.+++.
T Consensus        86 ~A~n~~G~g~~S~~i~v~T~  105 (107)
T d1x5fa1          86 MAQNKHGSGESSAPLRVETQ  105 (107)
T ss_dssp             EEECSSCEEEECCCEEEECC
T ss_pred             EEEeCCCCcCCCCCEEEECC
Confidence            99999999999999888765

>d2dn7a1 b.1.2.1 (A:8-101) Receptor-type tyrosine-protein phosphatase F, PTPRF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase F, PTPRF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6e-11  Score=72.58  Aligned_cols=89  Identities=12%  Similarity=0.069  Sum_probs=67.5

Q ss_pred             CCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        157 PQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       157 p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      |.+|. +.+.....+.+.|.|.++...+.+ ..|.+.|+..+...............+.|.+  |.++..|.|++.|.|.
T Consensus         1 P~~P~-~~~~~~~~~sv~l~W~pP~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~n~   77 (94)
T d2dn7a1           1 PGRPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTG--LHKGTTYIFRLAAKNR   77 (94)
T ss_dssp             CCCCE-EEEEECSTTEEEEEEECCSSCSSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEEC--CCTTCEEEEEEEEEET
T ss_pred             CCCCc-EeEEEEeCCEEEEEEeCCCCCCCceEEEEEEEEEcCCCCcEEEEcCCCccEEEEEc--cCCeeEEEEEEEEEcC
Confidence            45665 345556789999999987655555 4599998876655433334445668999999  9999999999999999


Q ss_pred             CCcCCceeeeeee
Q psy11549        236 KGRSLPVIWDDFS  248 (261)
Q Consensus       236 ~G~~~~s~~~~~~  248 (261)
                      .|.|+++.....+
T Consensus        78 ~G~g~~s~~~~~T   90 (94)
T d2dn7a1          78 AGLGEEFEKEIRT   90 (94)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CcCCCCccEEEee
Confidence            9999988765544

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-11  Score=76.82  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=59.2

Q ss_pred             EEeeCCCcEEEEEEEeeC-CCCceeEEEEcCCccccccC-CceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         69 VGASRSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVG-SERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      +...+|+.+.|.|.+... +.+ ++.|++++........ ..++...+  ..|.|.++..+|+|.|+|.+.|..|.....
T Consensus        12 ~~~~~~e~~~l~C~~~~~~~~~-~i~W~k~~~~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1          12 LVSSANEIDVRPCPLNPNEHKG-TITWYKDDSKTPVSTEQASRIHQHK--EKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             EEEETTSCEEECCCCCGGGCSS-EEEEECSSTTSBCCCCTTSSEEEET--TEEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEeCCCeEEEEeeCCCCCCCc-eEEEEECCcccccccccceEEeccC--CEEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            567789999999988644 555 8999998754332221 22233333  379999999999999999999999988775


Q ss_pred             EEEEEE
Q psy11549        147 CLYQVV  152 (261)
Q Consensus       147 ~~~~v~  152 (261)
                      ..+.|.
T Consensus        89 ~~L~V~   94 (101)
T d1iray1          89 ISAKFV   94 (101)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            555554

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.5e-11  Score=74.76  Aligned_cols=72  Identities=19%  Similarity=0.336  Sum_probs=53.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~  145 (261)
                      ..+.+|+++.|.|.+.+ ++| .+.|++++..  +.....++..... ..|.|.++..+|+|.|+|.|.|..+....
T Consensus         7 ~~~~~G~~~~l~C~~~g-~~~-~v~W~~~g~~--l~~~~~~~~~~~~-~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~   78 (92)
T d1olza1           7 HFFKHGGTAELKCSQKS-NLA-RVFWKFQNGV--LKAESPKYGLMGR-KNLLIFNLSEGDSGVYQCLSEERVKNKTV   78 (92)
T ss_dssp             EEEETTSCEEECCCCSC-TTC-EEEEEESSSB--CCCCSSSBCCTTT-TCEEECSCCGGGCEEEEEEEEEECSSSEE
T ss_pred             eeEeCCCEEEEEEEeec-cCC-ceeeecCccc--ceeeeeeeeccee-eEEEECCCCHHHCcEEEEEEEEcCCCEEE
Confidence            56789999999999988 555 7999998753  2223333333222 26999999999999999999998775544

>d1qg3a2 b.1.2.1 (A:1218-1320) Integrin beta-4 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Integrin beta-4 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1e-10  Score=72.88  Aligned_cols=91  Identities=13%  Similarity=0.050  Sum_probs=70.7

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccce------eEEEecCCCCcEEEcCCCCCCccEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNL------LVNLTNLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      +.|++|.++.+.......+.|.|.++.+.+.++ .|.+.|+.......      ...........++|.+  |+++..|.
T Consensus         1 d~P~~P~~~~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~   78 (103)
T d1qg3a2           1 EVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIEN--LRESQPYR   78 (103)
T ss_dssp             CCCCCCCCCEEEEEETTEEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBCSCCEEEEECCTTCCEEEECC--CCTTCCEE
T ss_pred             CcCccCCCcEEEEecCCEEEEEEEECccCCCCceEEEEEeeccccccccccceEEEEecCCCceEEEEee--cCCCCEEE
Confidence            368899999999999999999999876666664 58888776433211      1133345567899999  99999999


Q ss_pred             EEEEEEcCCCcCCceeeeee
Q psy11549        228 VVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       228 ~~~~a~N~~G~~~~s~~~~~  247 (261)
                      |++.|.|..|.|.++.....
T Consensus        79 ~~V~A~n~~G~g~~s~~~v~   98 (103)
T d1qg3a2          79 YTVKARNGAGWGPEREAIIN   98 (103)
T ss_dssp             EEEEEEETTEECCCEEEEEC
T ss_pred             EEEEEEcCCccCCCcccccE
Confidence            99999999999998876643

>d1wfna1 b.1.2.1 (A:8-113) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=9.4e-11  Score=73.40  Aligned_cols=91  Identities=12%  Similarity=0.073  Sum_probs=71.0

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      +.|.+|.++.+.....+.+.|.|.++...+.+ ..|.+.|+..+...... .........+.|.+  |.++..|.|+|.|
T Consensus         9 ~vP~~p~~l~~~~~~~~sv~l~W~~P~~~ng~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~A   86 (106)
T d1wfna1           9 DVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTG--LTALTTYTIEVAA   86 (106)
T ss_dssp             CSCCCCSCCEEESCCSSEEEEECCCCTTCCSCCCEEEEEEEESSCGGGCCCEEECSSCCEEEEES--CCTTCEEEEEEEE
T ss_pred             CCCcCCCCcEEEEecCCEEEEEEECCCCCCCcEEeEEEEEEECCCCcceEEEecCCCeeEEEEcc--CCCCCEEEEEEEE
Confidence            56788999999888899999999976544444 45999887755443222 34445567899999  9999999999999


Q ss_pred             EcCCCcCCceeeeee
Q psy11549        233 VNAKGRSLPVIWDDF  247 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~  247 (261)
                      .|..|.|+.|.....
T Consensus        87 ~n~~G~g~~s~~~~~  101 (106)
T d1wfna1          87 MTSKGQGQVSASTIS  101 (106)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             ECCCCCcCCcCCEEc
Confidence            999999988876544

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=5.4e-11  Score=72.04  Aligned_cols=68  Identities=21%  Similarity=0.255  Sum_probs=51.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCce--EEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSER--FSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ..+..|+++.|.|.+. .|.+ .+.|++++.... .....+  +...+....|.|.++..+|+|.|+|.|.|.
T Consensus        10 ~~v~~G~~v~l~C~v~-~p~~-~v~W~k~~~~~~-~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   79 (90)
T d1x44a1          10 TTAYCGERVELECEVS-EDDA-NVKWFKNGEEII-PGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG   79 (90)
T ss_dssp             EEEETTEEEEEEEECS-SSSC-CCEEEETTEECC-CSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE
T ss_pred             EEEeCCCcEEEEEEEC-CCCc-eEEEEEeecccC-CCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc
Confidence            7788999999999984 5666 799999874322 222222  344556778999999999999999999773

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=4.3e-12  Score=78.12  Aligned_cols=59  Identities=24%  Similarity=0.426  Sum_probs=50.1

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeec
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAP   59 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p   59 (261)
                      ||||++|..+........+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.++|
T Consensus        37 ~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          37 LFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             EETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEECCSC
T ss_pred             EEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEEcCC
Confidence            57999998666555555567999999999999999999999999876778999998876

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.3e-10  Score=72.69  Aligned_cols=81  Identities=23%  Similarity=0.299  Sum_probs=57.6

Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCC-ceEEe-------CCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGS-ERFSS-------GSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~-------~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      ++....+.|.+.+.|.| .+.|++++..  +.... .....       ....+.|.|.++...|+|.|+|.|.|..|...
T Consensus        14 ~~~~~ci~~~v~G~P~P-~v~W~~ng~~--l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~   90 (107)
T d1he7a_          14 EMHHWCIPFSVDGQPAP-SLRWLFNGSV--LNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS   90 (107)
T ss_dssp             CCCEEEEEEEECCSSCC-EEEEEETTEE--CCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEE
T ss_pred             EEEEEEEEEEEEEecCC-eEEEEEeeeE--ccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEE
Confidence            34444566689999998 8999998743  22222 11111       11245799999999999999999999999877


Q ss_pred             eeEEEEEEeCCCCC
Q psy11549        145 TPCLYQVVLAGKPQ  158 (261)
Q Consensus       145 ~~~~~~v~~~~~p~  158 (261)
                      .  .+.|.+..+|.
T Consensus        91 ~--~i~v~v~~~P~  102 (107)
T d1he7a_          91 A--SIMAAFMDNPF  102 (107)
T ss_dssp             E--EEEECCCSCTT
T ss_pred             E--EEEEEEEcCCC
Confidence            6  66677777774

>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-10  Score=73.96  Aligned_cols=94  Identities=11%  Similarity=0.111  Sum_probs=69.8

Q ss_pred             CCCCCCcceEEe--ecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccce-eE--EEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        156 KPQPPQNCSVRN--ETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNL-LV--NLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       156 ~p~~p~~~~v~~--~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      |+.+|.++.+..  .....+.|+|.++...+.+ ..|.+.|........ .+  .........+.|.+  |.++..|.|+
T Consensus        11 P~~pP~~~~v~~~~~~~~sv~v~W~~P~~~~g~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~   88 (111)
T d1x5ka1          11 PTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQE--LTLDTPYYFK   88 (111)
T ss_dssp             CCSCCEEEEEEECSSCTTCEEEEEECCSCCSSCCCEEEEEEESCSSSCTTTSEEEEESTTCSEEEECS--CCSSSEEEEE
T ss_pred             CCCCCCCcEEEEecCCCCEEEEEEEccccCCCceeeeEEeeeecCCCCcceeEEEEeCCCeeEEEECC--CCCCCEEEEE
Confidence            445777777654  3567899999987665556 448888776444321 12  33444557899999  9999999999


Q ss_pred             EEEEcCCCcCCceeeeeeeecc
Q psy11549        230 ISGVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~~~~~~  251 (261)
                      |.|.|..|.|.+|..+.++++.
T Consensus        89 V~A~n~~G~g~~S~~v~~~T~~  110 (111)
T d1x5ka1          89 IQARNSKGMGPMSEAVQFRTPK  110 (111)
T ss_dssp             EEEECSSCBCCCCCCEEEECCC
T ss_pred             EEEEcCCCCcCCCCCEEEECCC
Confidence            9999999999999999887654

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.4e-11  Score=73.62  Aligned_cols=80  Identities=15%  Similarity=0.176  Sum_probs=57.5

Q ss_pred             EEeeCCCcEEEEE------EEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         69 VGASRSESVDIHC------AVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        69 ~~~~~g~~~~l~C------~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      ..+..|....|.|      .+.+.|.| .+.|++++.  .+.....++...+.  .|.|.++..+|+|.|+|.|.|..+.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P-~i~W~kdg~--~l~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELP-KLQWYKDCK--PLLLDNIHFSGVKD--RLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCC-CCEEEETTE--ECCCCSSSEEEETT--EEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCC-EEEEEECCc--cccCCCcEEEecCC--EEEEcccccccCcEEEEEEEECcCC
Confidence            5577999999999      45677777 899999874  33334444444443  6999999999999999999987654


Q ss_pred             EEe--eEEEEEEe
Q psy11549        143 QVT--PCLYQVVL  153 (261)
Q Consensus       143 ~~~--~~~~~v~~  153 (261)
                      ...  +..+.+.+
T Consensus        84 ~~~~vt~~i~~~v   96 (103)
T d1iray2          84 KQYPITRVIEFIT   96 (103)
T ss_dssp             EEEEEEEEEEEEE
T ss_pred             EEEEEEEEEEEEE
Confidence            332  33444444

>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Sidekick 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=2.4e-11  Score=76.92  Aligned_cols=90  Identities=26%  Similarity=0.329  Sum_probs=69.4

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccc----eeE--EEecCCCCcEEEcCCCCCCccEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLN----LLV--NLTNLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~----~~~--~~~~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      +.|.+|.++.+.....+.+.|.|.++.+++.++. |.+.++......    ..+  .........+.|.+  |.++..|.
T Consensus         9 ~~P~~P~~~~~~~~~~~sv~l~W~pp~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--L~p~t~Y~   86 (111)
T d1wisa1           9 ELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPD--LNPFTCYS   86 (111)
T ss_dssp             CCCCCCEEEEEESCCSSCEEEEEECCCCCSSCCSEEEEEECBSCCSTTSCCEEEEEEESCTTCSEEEECS--CCTTSEEC
T ss_pred             CCCcCCCCCEEEEcCCCEEEEEEeCCCCCCCceeEEEEeeeecccCCCcceeeeeeeecccceeEEEeCC--CCCCCEEE
Confidence            5677888888888889999999998888777754 777776533321    111  22334457899999  99999999


Q ss_pred             EEEEEEcCCCcCCceeeee
Q psy11549        228 VVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       228 ~~~~a~N~~G~~~~s~~~~  246 (261)
                      |+|.|.|.+|.|++|...+
T Consensus        87 frV~A~N~~G~s~~S~~s~  105 (111)
T d1wisa1          87 FRMRQVNIVGTSPPSQPSR  105 (111)
T ss_dssp             CCCEEECSSCBCCCCCCCC
T ss_pred             EEEEEEcCCcCCCCcCCCC
Confidence            9999999999999887653

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.19  E-value=2.7e-11  Score=72.49  Aligned_cols=62  Identities=16%  Similarity=0.286  Sum_probs=49.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ..+.+|+.++|.|.+.+.+.+..+.|++++..  +.         .....|.|..+..+|+|.|+|.+.|..+
T Consensus        14 ~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~--~~---------~~~~~l~i~~v~~~dsG~Y~C~a~ns~~   75 (85)
T d2fcba1          14 INVLQEDSVTLTCRGTHSPESDSIQWFHNGNL--IP---------THTQPSYRFKANNNDSGEYTCQTGQTSL   75 (85)
T ss_dssp             SEEETTCEEEEEEECSSCCCTTCCEEEETTEE--CT---------TCCSSEEEEECCGGGCEEEEEECTTSBC
T ss_pred             eEEcCCCeEEEEEEEeeccceeEEEeeccccc--cc---------ccccceEEeeccccCCcEEEEECCCCcc
Confidence            45779999999999999888767999987742  21         1123689999999999999999987643

>d1ueya_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.8e-11  Score=77.44  Aligned_cols=94  Identities=27%  Similarity=0.304  Sum_probs=73.1

Q ss_pred             EEeCCCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccEEE
Q psy11549        151 VVLAGKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       151 v~~~~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      ..+.+.|.+|.++++.......+.|.|.++.+.+.++. |.+.++........+  .........+.|.+  |.++..|+
T Consensus        11 ~~v~d~P~~P~~~~v~~~~~~sv~l~W~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~   88 (127)
T d1ueya_          11 APVYDVPNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTTAQLN--LSPYVNYS   88 (127)
T ss_dssp             CCCCCSCCCCEEEEEECCSSSCEEEEEECCCCCSSCEEEEEEEEEBTTTCTTCEEEEEEEESSCCEEEEC--CCTTCEEC
T ss_pred             ccccccCcCCCCcEEEEecCCeEEEEEeCCcccccceEeeeeeeccccccceeEEEEeecCCceEEEECC--CccCCEEE
Confidence            34557889999999988899999999998777777755 667776654443232  33334557899999  99999999


Q ss_pred             EEEEEEcCCCcCCceeeee
Q psy11549        228 VVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       228 ~~~~a~N~~G~~~~s~~~~  246 (261)
                      |++.|.|..|.|.+|....
T Consensus        89 frV~A~n~~G~s~~S~~s~  107 (127)
T d1ueya_          89 FRVMAVNSIGKSLPSEASE  107 (127)
T ss_dssp             CEEEEEESSCBCCCCSCCC
T ss_pred             EEEEEEcCCcCcCCcCCcc
Confidence            9999999999999887654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.18  E-value=2.8e-11  Score=72.21  Aligned_cols=62  Identities=23%  Similarity=0.313  Sum_probs=48.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ..+.+|++++|.|.+.+.+.+..+.|++++.  .+.         .....|.|.++..+|+|.|+|.+.+...
T Consensus        15 ~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~--~~~---------~~~~~l~i~~~~~~d~G~Y~C~a~~s~~   76 (84)
T d1fnla1          15 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNES--LIS---------SQASSYFIDAATVNDSGEYRCQTNLSTL   76 (84)
T ss_dssp             SEEETTCCEEEEEECCCBTTBCCCEEEETTE--EEE---------SSCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             cEEeCCCeEEEEEEeccCCCCeEEEEeeece--eee---------ecceeeEecCCcccCCEEEEEEccCCCc
Confidence            4577999999999999988875677777653  221         1223699999999999999999987543

>d1v5ja_ b.1.2.1 (A:) KIAA1355 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1355
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.4e-11  Score=75.21  Aligned_cols=94  Identities=17%  Similarity=0.057  Sum_probs=73.0

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      ..+.+|+++.+.. ....+.|.|.++...+.++. |.++|+......... .........++|.+  |.+++.|.|+|.|
T Consensus         6 s~~sPP~~~~~~~-t~~si~l~W~pp~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~rV~A   82 (108)
T d1v5ja_           6 SGLSPPRGLVAVR-TPRGVLLHWDPPELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPG--LIKDVLYEFRLVA   82 (108)
T ss_dssp             CCCCCCEEEEEEE-CSSSEEEEEECCSCCSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCC--CCTTSCEECCBEE
T ss_pred             CCCCcCCCeEEEE-cCCEEEEEEEecccCCCceeEEEEEeeeeeeeeeeccccccceeeeEEEEe--ccCCcEEEEEEEE
Confidence            4567888887754 67889999998766666655 888888765543333 33444567899999  9999999999999


Q ss_pred             EcCCCcCCceeeeeeeecc
Q psy11549        233 VNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       233 ~N~~G~~~~s~~~~~~~~~  251 (261)
                      .|..|.+++|..+.+++..
T Consensus        83 ~n~~g~s~~S~~~~~~T~~  101 (108)
T d1v5ja_          83 FAGSFVSDPSNTANVSTSG  101 (108)
T ss_dssp             EETTEEEEECSCCCCCCSS
T ss_pred             EeCCCEeCCcCceEEECCC
Confidence            9999999999888887654

>d2haza1 b.1.2.1 (A:489-589) Neural cell adhesion molecule 1, NCAM {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neural cell adhesion molecule 1, NCAM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-10  Score=72.31  Aligned_cols=92  Identities=16%  Similarity=0.176  Sum_probs=68.8

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecC-CCCCCCe-EEEEEEEeCCccceeE--EE--ecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPG-YDGGLPQ-TFTLELYSASDLNLLV--NL--TNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~-~~~~~p~-~~~~~~~~~~~~~~~~--~~--~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      .|.+|....+. ...+.+.|.|.++ .++|.|+ .|.++|+..+......  ..  .......++|.+  |.++..|.|+
T Consensus         2 vP~~P~~~~~~-~~~~sv~l~W~~P~~~gg~~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~fr   78 (101)
T d2haza1           2 TPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVG--LKPETTYAVR   78 (101)
T ss_dssp             CCCCCEEEEEE-ECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECS--CCTTCEEEEE
T ss_pred             cCcCCccCEEE-eeCCEEEEEEeCCCcCccccEEEEEEEEeecCCcceeeeeeeeecccceeEEEecC--CCCCeEEEEE
Confidence            57777655554 4678899999975 4566775 5999998765542211  11  112346799999  9999999999


Q ss_pred             EEEEcCCCcCCceeeeeeeec
Q psy11549        230 ISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      +.|.|..|.|++|....+++.
T Consensus        79 V~A~N~~G~g~~S~~~~~~T~   99 (101)
T d2haza1          79 LAALNGKGLGEISAASEFKTQ   99 (101)
T ss_dssp             EEEEETTEECCCCCCEEEECC
T ss_pred             EEEEeCCcCcCCCCceeEEeC
Confidence            999999999999999887764

>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1. {Bacillus circulans [TaxId: 1397]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type III domain from chitinase A1.
species: Bacillus circulans [TaxId: 1397]

Probab=99.17  E-value=1.1e-10  Score=70.24  Aligned_cols=84  Identities=20%  Similarity=0.181  Sum_probs=64.2

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      +|.+|.++.+.......+.|+|.++.+++.-..|.+.+..  .   ..  .......+++.+  |.++..|.|+|.|.|.
T Consensus         3 AP~~P~~l~~~~~~~~sv~lsW~~p~~~~~i~~Y~i~~~~--~---~~--~~~~~t~~~~~~--L~p~t~Y~~~V~A~n~   73 (88)
T d1k85a_           3 APTAPTNLASTAQTTSSITLSWTASTDNVGVTGYDVYNGT--A---LA--TTVTGTTATISG--LAADTSYTFTVKAKDA   73 (88)
T ss_dssp             SCCCCEEEEEEEECSSCEEEEEECCSCCSSEEEEEEEESS--S---EE--EEESSSEEEECC--CCSSCEEEEEEEEEET
T ss_pred             CcCCCCCcEEEEecCCEEEEEEeCCCCCCCEEEEEEEccc--e---EE--EecCCCEEEECC--CCCCCEEEEEEEEEEC
Confidence            5789999999888899999999976554433446665321  1   11  123457899999  9999999999999999


Q ss_pred             CC-cCCceeeeeee
Q psy11549        236 KG-RSLPVIWDDFS  248 (261)
Q Consensus       236 ~G-~~~~s~~~~~~  248 (261)
                      .| .+.+|..+.++
T Consensus        74 ~G~~s~~S~~v~vt   87 (88)
T d1k85a_          74 AGNVSAASNAVSVK   87 (88)
T ss_dssp             TTEECCCCCCEEEE
T ss_pred             CCCcCCCCcCEEEE
Confidence            99 68888887765

>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.16  E-value=8.8e-11  Score=73.66  Aligned_cols=87  Identities=17%  Similarity=0.142  Sum_probs=59.7

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCcccee--E--EE---------ecCCCCcEEEcCCCCCCcc
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNLL--V--NL---------TNLDTPAFTLEDLGLDGTV  224 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~~--~--~~---------~~~~~~~~~i~~~~l~~~~  224 (261)
                      ||....+.....+.+.|+|.++.+++.++. |.++|+........  .  ..         .......++|.+  |+++.
T Consensus         2 PP~~p~v~~~~~~sv~l~W~~P~~~g~~I~~Y~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t   79 (107)
T d2ic2a1           2 PPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTD--LKPQH   79 (107)
T ss_dssp             CCCCCEEEECC---EEEEEEEECCSSCCEEEEEEEEEECC---CCEEEEEEEECCSCSCSSSSEEEEEEEECS--CCSSE
T ss_pred             cCcCCEEEEEECCEEEEEEEeCccccCCceEEEEEEEeccCCCcceEEEeeeeccceeeeecccceeEEEECC--CcCCc
Confidence            344446777789999999998888888866 99988764432110  0  00         011234789999  99999


Q ss_pred             EEEEEEEEEcCCCcCCceeeeee
Q psy11549        225 LMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       225 ~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      .|.|+|.|.|..|.|.+|.....
T Consensus        80 ~Y~frV~A~N~~G~s~~S~~s~~  102 (107)
T d2ic2a1          80 TYRFRILAVYSNNDNKESNTSAK  102 (107)
T ss_dssp             EEEEEEEEEETTSCEEECCCCCC
T ss_pred             EEEEEEEEEcCCCCCCCCCCCCC
Confidence            99999999999999988866543

>d1cd9b1 b.1.2.1 (B:1-107) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=6e-11  Score=74.45  Aligned_cols=86  Identities=21%  Similarity=0.226  Sum_probs=63.7

Q ss_pred             CCCCCCCcce-EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc----eeE--EEec--CCCCcEEEcCCCCCCccE
Q psy11549        155 GKPQPPQNCS-VRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN----LLV--NLTN--LDTPAFTLEDLGLDGTVL  225 (261)
Q Consensus       155 ~~p~~p~~~~-v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~----~~~--~~~~--~~~~~~~i~~~~l~~~~~  225 (261)
                      .||.+|.++. +.......++++|.++.+++.+..|.+.+.......    ..+  ....  .....+.+.+  |.++..
T Consensus         3 ~PP~~P~~v~~i~~~~~~sv~~sW~p~~d~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~~t~   80 (107)
T d1cd9b1           3 YPPASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKN--LLLYQY   80 (107)
T ss_dssp             CCCCCCEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGG--CCTTSC
T ss_pred             CccCCCcCCEEEEecCCCEEEEEEcCCCCCCCCcceeEEEEEeecccceeeeeeeeeccccCccccEEEcCC--CCcCce
Confidence            5889999987 555667899999999889999988877776543221    111  1111  2335677778  999999


Q ss_pred             EEEEEEEEcCCCcCCce
Q psy11549        226 MRVVISGVNAKGRSLPV  242 (261)
Q Consensus       226 Y~~~~~a~N~~G~~~~s  242 (261)
                      |.|++.|.|.+|.++++
T Consensus        81 Y~frV~A~N~~G~s~S~   97 (107)
T d1cd9b1          81 MAIWVQAENMLGSSESP   97 (107)
T ss_dssp             EEEEEEEEETTEEEECC
T ss_pred             EEEEEEEEeCCccccCC
Confidence            99999999999988643

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=6.5e-11  Score=73.46  Aligned_cols=74  Identities=14%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-C-ceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEee
Q psy11549         69 VGASRSESVDIHCAVEADPP-A-RSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTP  146 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~  146 (261)
                      ..+..|+.++|.|.+.+..+ + .++.|++++..  +  ...........+.|.|.....+|.|.|+|.|.|..|.....
T Consensus        14 ~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~--l--~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~   89 (103)
T d1iama1          14 SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE--L--KREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLE   89 (103)
T ss_dssp             SEECTTSEEEEEEEEECCBCGGGEEEEEEETTEE--E--EEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSC
T ss_pred             ceEeCCCEEEEEEEecCCCCCCceEEEEcccccc--c--cccccccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCe
Confidence            34678999999999997544 3 26889987642  2  11122223345679999999999999999999988876553

>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Receptor-type tyrosine-protein phosphatase delta, PTPRD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1e-10  Score=72.73  Aligned_cols=92  Identities=16%  Similarity=0.137  Sum_probs=71.5

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEc
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVN  234 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N  234 (261)
                      ..|.+|.++.+.......+.|+|.++.. +.-..|.+.|+.......... .......+.|.+  |.++..|.|++.|.|
T Consensus         9 ~vP~~P~~~~~~~~~~~si~l~W~~p~~-~~i~~Y~i~y~~~~~~~~~~~-~~~~~~~~~i~~--L~p~t~Y~~~V~A~n   84 (102)
T d1x5za1           9 GVPGQPLNFKAEPESETSILLSWTPPRS-DTIANYELVYKDGEHGEEQRI-TIEPGTSYRLQG--LKPNSLYYFRLAARS   84 (102)
T ss_dssp             CCCCCCEEEEEECSSSSEEEEEEECCSC-CCCCEEEECBEESSSCCCBCC-EECSSSEEEEEC--CCTTCEEEECEEEEC
T ss_pred             CCCcCCCCeEEEEccCCEEEEEEECCCC-CCccceEEEEEeCCCCceEEE-EcCCcCEEEECC--CCCCCEEEEEEEEEc
Confidence            5678888899988889999999997432 233569998887655532222 223457899999  999999999999999


Q ss_pred             CCCcCCceeeeeeeec
Q psy11549        235 AKGRSLPVIWDDFSMS  250 (261)
Q Consensus       235 ~~G~~~~s~~~~~~~~  250 (261)
                      ..|.|.+|..+.+++.
T Consensus        85 ~~G~g~~S~~v~~~T~  100 (102)
T d1x5za1          85 PQGLGASTAEISARTM  100 (102)
T ss_dssp             SSCEEEECCCEEEECC
T ss_pred             CCCEeCCCCCEEEEcC
Confidence            9999999988887654

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.3e-11  Score=72.23  Aligned_cols=62  Identities=23%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ..+.+|+.++|.|.+.+.+.+..+.|++++.  .+.         .....|.|.++..+|+|.|.|.|.+...
T Consensus        11 ~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~--~~~---------~~~~~l~i~~v~~~d~G~Y~C~a~~s~~   72 (82)
T d1f2qa1          11 NRIFKGENVTLTCNGNNFFEVSSTKWFHNGS--LSE---------ETNSSLNIVNAKFEDSGEYKCQHQQVNE   72 (82)
T ss_dssp             SEEETTCCEEEECCTTCC----CCEEEETTE--ECS---------CCSSEEEECSCCGGGCEEEEEECTTSSC
T ss_pred             eEEeCCCeEEEEEEEeeeeeecceeeeeeee--eee---------cccceeEECCCChhhCCcEEEEecCCCC
Confidence            4577999999999999998875677777653  221         1223699999999999999999987644

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.13  E-value=1.7e-11  Score=74.09  Aligned_cols=69  Identities=16%  Similarity=0.154  Sum_probs=54.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +.+.+|+++.|.|.+. .|.| .+.|++++.. ........+...+..+.|.|.++..+|+|.|+|.|.|..
T Consensus        11 ~~v~~G~~~~~~c~vs-~p~~-~v~W~k~g~~-i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~   79 (89)
T d1tiua_          11 VEVFVGETAHFEIELS-EPDV-HGQWKLKGQP-LTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK   79 (89)
T ss_dssp             EEEETTSCCCEEEBCS-SSSC-CCBCCSSSCC-CCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB
T ss_pred             EEEeCCCcEEEEEEEC-CCCc-EEEEEEeeee-cccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE
Confidence            7788999999999984 5666 7999998753 223334455566677789999999999999999997754

>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=7.1e-10  Score=68.89  Aligned_cols=92  Identities=15%  Similarity=0.137  Sum_probs=67.8

Q ss_pred             CCCCCCcceEEe----ecCCeEEEEeecCCC----CC-CCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        156 KPQPPQNCSVRN----ETTSSVHISCTPGYD----GG-LPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       156 ~p~~p~~~~v~~----~~~~~~~l~c~~~~~----~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      +|.+|.++.+..    .....+.|+|.++..    .+ ....|.+.++..+..... .........+.|.+  |.+++.|
T Consensus         2 kP~pP~nl~~~~~~~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~~~~~~~~~~~-~~~~~~~~~~~i~~--L~p~t~Y   78 (103)
T d1f6fb2           2 EPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWE-IHFTGHQTQFKVFD--LYPGQKY   78 (103)
T ss_dssp             CCCCCEEEEEEEC----CCCCEEEEEECCTTSCTTTTSSCEEEEEEEEESSCSCCE-EEEEETCSEEEECC--CCTTCEE
T ss_pred             CCCCCCCCEEEEEecccCCCEEEEEECCCCcccCCCCcEEEEEEEEEEeCCCccee-eecccceeEEEeCC--CCcceEE
Confidence            578888877652    356779999997632    22 335699998887665322 22333457999999  9999999


Q ss_pred             EEEEEEEcCCC-cCCceeeeeeeec
Q psy11549        227 RVVISGVNAKG-RSLPVIWDDFSMS  250 (261)
Q Consensus       227 ~~~~~a~N~~G-~~~~s~~~~~~~~  250 (261)
                      .|+|+|.|..| +|++|....+.++
T Consensus        79 ~~rVra~~~~G~wS~wS~~~~~~~P  103 (103)
T d1f6fb2          79 LVQTRCKPDHGYWSRWSQESSVEMP  103 (103)
T ss_dssp             EEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             EEEEEEEeCCCCCCCCcCceeeECc
Confidence            99999999999 4999988877653

>d2fnba_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.8e-10  Score=67.88  Aligned_cols=84  Identities=14%  Similarity=0.185  Sum_probs=65.7

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      +|.++.+.....+.+.|+|.++  .+.+ ..|.++++..+...... .........++|.+  |.++..|.|++.|.|..
T Consensus         8 ~P~~l~v~~~t~~si~l~W~~p--~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~i~~--L~p~t~Y~~~V~a~~~~   83 (95)
T d2fnba_           8 QLTDLSFVDITDSSIGLRWTPL--NSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTG--LEPGIDYDISVITLING   83 (95)
T ss_dssp             CCTTCEEECCCSSCEEEECCCC--CCSSCCEEEEEEEEETSCCEEEEEECCSSCSEEEECC--CCTTSEEEEEEEEEETT
T ss_pred             cCCCeEEEEEcCCEEEEEEEec--CCceEEeEEEEEEEeeccceEEEEEeCCCCeEEEEec--ccCCEEEEEEEEEEeCC
Confidence            7889999999999999999973  2333 45888887755443222 33445568899999  99999999999999999


Q ss_pred             CcCCceeeee
Q psy11549        237 GRSLPVIWDD  246 (261)
Q Consensus       237 G~~~~s~~~~  246 (261)
                      |.|+++....
T Consensus        84 g~s~p~~~~~   93 (95)
T d2fnba_          84 GESAPTTLTQ   93 (95)
T ss_dssp             EECCCCEEEE
T ss_pred             cEeCCEEEEE
Confidence            9998886654

>d2ibga1 b.1.2.1 (A:573-667) Hedgehog receptor iHog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Hedgehog receptor iHog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=3e-10  Score=69.50  Aligned_cols=86  Identities=8%  Similarity=0.090  Sum_probs=65.1

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCC-CCCCC-eEEEEEEEeCCccc-eeE-EEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGY-DGGLP-QTFTLELYSASDLN-LLV-NLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~-~~~~p-~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .|+.+|.++.+.....+.+.|.|.++. ..+.+ ..|.+.|+..+... ... .........+.|.+  |++++.|+|++
T Consensus         5 ~P~~~P~~~~v~~~s~tsv~l~W~~P~~~~~~~i~gY~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V   82 (95)
T d2ibga1           5 DPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAP--LETATMYEFKL   82 (95)
T ss_dssp             CCCCCCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEECTTCCEEEECS--CCTTCEEEEEE
T ss_pred             CCCCCCcCeEEEEeCCCEEEEEEEeeeeccCCcccccceeEeeeeecceeeeeeccCCceeEEEEee--ccCCeEEEEEE
Confidence            455578888888888899999999643 33444 34999888754432 122 34445568899999  99999999999


Q ss_pred             EEEcCCCcCCce
Q psy11549        231 SGVNAKGRSLPV  242 (261)
Q Consensus       231 ~a~N~~G~~~~s  242 (261)
                      .|.|..|.|++|
T Consensus        83 ~A~n~~G~s~~S   94 (95)
T d2ibga1          83 QSFSAASASEFS   94 (95)
T ss_dssp             EEECSSCBCCCC
T ss_pred             EEEeCCccCCCC
Confidence            999999999876

>d1wfua_ b.1.2.1 (A:) Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type 3 and ankyrin repeat domains 1 protein, FANK1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=6.2e-11  Score=76.05  Aligned_cols=95  Identities=9%  Similarity=-0.050  Sum_probs=65.6

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCC-CCCCCeE-EEEEEEe--CCccceeE-EEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGY-DGGLPQT-FTLELYS--ASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~-~~~~p~~-~~~~~~~--~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      .+|.+|....+.....+.+.|.|.++. +++.++. |.+.|+.  .+.....| .........++|.+  |++++.|.|+
T Consensus        14 ~pp~~P~~p~v~~vt~~sv~l~W~~P~~~~g~~i~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~~v~~--L~p~t~Y~fr   91 (120)
T d1wfua_          14 VPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEG--LEPRTLYKFR   91 (120)
T ss_dssp             CCCCCCCCCBCCCEETTEEEEECTTTSCSCCCSCGGGCCEEEEEEECTTTCCEEEEEEESCSEEEEES--CCTTCEEEEE
T ss_pred             cCCCcCCCCEEeEecCCEEEEEEECCcccCcccccceeeeeeeecccccccceeeeccccccEEeCCC--CCCCcEeeEE
Confidence            345555555565567899999999654 3444433 5544432  11112233 33334557899999  9999999999


Q ss_pred             EEEEcCCCcCCceeeeeeeecc
Q psy11549        230 ISGVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~~~~~~  251 (261)
                      |.|.|..|.+.+|..+.+.+..
T Consensus        92 V~A~n~~G~s~~S~~~~~~T~~  113 (120)
T d1wfua_          92 LKVTSPSGEYEYSPVVSVATTR  113 (120)
T ss_dssp             EEEECSSSCEEECCCEEEECCC
T ss_pred             EEEEeCCcEeCCCCCEEEEeCC
Confidence            9999999999999988887653

>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-6 receptor alpha chain, domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=6.3e-10  Score=69.26  Aligned_cols=89  Identities=12%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             CCCCCCcceEEeec--CCeEEEEeecCCC--CC-CCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        156 KPQPPQNCSVRNET--TSSVHISCTPGYD--GG-LPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       156 ~p~~p~~~~v~~~~--~~~~~l~c~~~~~--~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .|.+|.++.+....  ...+.|+|.++..  .+ ....|.+.|+..................+.|.+  |.++..|.|+|
T Consensus         1 kP~pP~~l~v~~~~~~~~~l~v~W~~P~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~rV   78 (104)
T d1n26a3           1 QPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHD--AWSGLRHVVQL   78 (104)
T ss_dssp             CCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTCSCCEEEECGGGCSEEEESS--CCTTCCEEEEE
T ss_pred             CCcCCCCCEEEEEecCCCEEEEEEEeeeecCCCceeEEEEEEEeeCCCCceeeeccccceEEEEECC--CCCCCEEEEEE
Confidence            47899888887653  4579999997642  22 335588888876655322233334557899999  99999999999


Q ss_pred             EEEcCCCcCCceeeee
Q psy11549        231 SGVNAKGRSLPVIWDD  246 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~  246 (261)
                      +|.|..|.|.+|.+..
T Consensus        79 ra~n~~g~g~wSewS~   94 (104)
T d1n26a3          79 RAQEEFGQGEWSEWSP   94 (104)
T ss_dssp             EEEETTTBSCCCCCCC
T ss_pred             EEEeCCCccCCcCCcC
Confidence            9999999988888754

>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.6e-09  Score=67.32  Aligned_cols=92  Identities=13%  Similarity=0.061  Sum_probs=64.9

Q ss_pred             CCCCCCcceEEe----ecCCeEEEEeecCCCC-----CCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        156 KPQPPQNCSVRN----ETTSSVHISCTPGYDG-----GLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       156 ~p~~p~~~~v~~----~~~~~~~l~c~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      +|.+|.++.+..    .....+.|+|.++...     +....|.+.++........ .........++|.+  |.+++.|
T Consensus         2 kP~pP~~l~~~~~~~~~~~~~l~v~W~pP~~~~~~~~~~~~~Y~~~~~~~~~~~~~-~~~~~~~~~~~i~~--L~p~t~Y   78 (104)
T d3d48r2           2 QPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWE-IHFAGQQTEFKILS--LHPGQKY   78 (104)
T ss_dssp             CCCCCEEEEEECC------CCEEEEEECCTTCCCTTSSCCEEEEEEEEETTCSSCE-EEEEETCSEEEECC----CCCEE
T ss_pred             CCcCCCCCEEEEEeccCCCCeEEEEEeCCccccCCCCcEEEEEeecccccccccee-eeccccccEEEECC--CCCCCEE
Confidence            578888877752    3467799999976432     1234588887776655322 23334557899999  9999999


Q ss_pred             EEEEEEEcCCCc-CCceeeeeeeec
Q psy11549        227 RVVISGVNAKGR-SLPVIWDDFSMS  250 (261)
Q Consensus       227 ~~~~~a~N~~G~-~~~s~~~~~~~~  250 (261)
                      .|+++|.|..|. |++|..+.+.++
T Consensus        79 ~~rVrA~n~~G~ws~wS~~~~v~tP  103 (104)
T d3d48r2          79 LVQVRCKPDHGYWSAWSPATFIQIP  103 (104)
T ss_dssp             EEEEEEEESSSCCCCCCCCEEEECC
T ss_pred             EEEEEEEeCCCCCCCCcCCEEEECc
Confidence            999999999996 999999988765

>d1x5ja1 b.1.2.1 (A:8-107) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.7e-10  Score=69.30  Aligned_cols=93  Identities=11%  Similarity=0.051  Sum_probs=70.5

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecCC-CCC----CCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPGY-DGG----LPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~~-~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      |+.+|.++.+.......+.|+|.++. ..+    ....|.+.++..+.....+.........++|.+  |.+++.|.|++
T Consensus         1 P~~pP~~v~~~~~s~tsi~v~W~~p~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V   78 (100)
T d1x5ja1           1 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTG--LKPNTLYEFSV   78 (100)
T ss_dssp             CCCCCEEEEEEEEETTEEEEEEECTTSCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEES--CCTTCEECCEE
T ss_pred             CCCCCcCeEEEEecCCEEEEEEcCCccccccceeeEEEEEEEeeecCCCcceeEecCCCccEEEECC--CCCCCEEEEEE
Confidence            45688889999899999999999642 111    223466766665555434444444557899999  99999999999


Q ss_pred             EEEcCCCcCCceeeeeeeec
Q psy11549        231 SGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~~~~  250 (261)
                      .|.|..|.|.+|..+.+++.
T Consensus        79 ~a~n~~g~s~~S~~~~~~T~   98 (100)
T d1x5ja1          79 MVTKGRRSSTWSMTAHGTTF   98 (100)
T ss_dssp             EEECSSCBCCCCCCCCEECC
T ss_pred             EEEeCCcCcCCCCeEEEEec
Confidence            99999999999998887654

>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.08  E-value=2.4e-09  Score=64.32  Aligned_cols=83  Identities=19%  Similarity=0.120  Sum_probs=66.9

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      .+|.++++.....+.+.|+|.+  ..+....|.+.|+..+...............++|.+  |.++..|.|++.|.|..|
T Consensus         2 ~~P~~l~v~~v~~~s~~l~W~~--~~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~~~~g   77 (88)
T d1qr4a2           2 GSPKGISFSDITENSATVSWTP--PRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVK--LVPGVDYNVNIISVKGFE   77 (88)
T ss_dssp             CCCSCEEEESCCSSCEEEEECC--CSSCCSEEEEEEEETTCCCCEEEEEETTCCEEEECS--CCSSCEEEEEEEEEETTE
T ss_pred             cCCcceEEEEecCCEEEEEEEc--ccEeeceEEEEEEeccCCceEEEEecCCccEEEECC--CCCCCEEEEEEEEEeCCC
Confidence            4688899999999999999997  334446699988886665444444456678999999  999999999999999999


Q ss_pred             cCCceee
Q psy11549        238 RSLPVIW  244 (261)
Q Consensus       238 ~~~~s~~  244 (261)
                      .|++...
T Consensus        78 ~s~p~~~   84 (88)
T d1qr4a2          78 ESEPISG   84 (88)
T ss_dssp             ECCCEEE
T ss_pred             CcCCEEE
Confidence            9887644

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.07  E-value=1.5e-10  Score=69.89  Aligned_cols=53  Identities=32%  Similarity=0.525  Sum_probs=44.6

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +|||++|..+  .+....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        36 ~k~g~~i~~~--~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   88 (89)
T d1cs6a4          36 LRDGQPLASQ--NRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV-YASAELTVQ   88 (89)
T ss_dssp             EETTEECCCC--SSEEEETTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEeecccccc--ceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEE-EEEEEEEEE
Confidence            5899999753  3456678899999999999999999999999987 557888874

>d1x5ha1 b.1.2.1 (A:8-126) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.2e-10  Score=71.12  Aligned_cols=95  Identities=17%  Similarity=0.178  Sum_probs=71.4

Q ss_pred             CCC-CCCCcceEEeecCCeEEEEeecCC--CCCCCe-EEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        155 GKP-QPPQNCSVRNETTSSVHISCTPGY--DGGLPQ-TFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       155 ~~p-~~p~~~~v~~~~~~~~~l~c~~~~--~~~~p~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      +.| .+|.++.+.......+.|+|.++.  ..+.++ .|.+.|+......... .........+.|.+  |.++..|.|+
T Consensus         9 ~~P~~~P~~v~~~~~~~~si~v~W~~p~~~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~   86 (119)
T d1x5ha1           9 DVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEG--LDRGTEYNFR   86 (119)
T ss_dssp             SSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEEEEC--CCSSCEEEEE
T ss_pred             CCCCCCCcCeEEEEecCcEEEEEEEcccccCCCCCEEEEEEEEeecccccceeeeecCCCccEEEeCC--CCCCCEEEEE
Confidence            345 478888888888899999999653  223344 4888887765543222 22334567899999  9999999999


Q ss_pred             EEEEcCCCcCCceeeeeeeecc
Q psy11549        230 ISGVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~~~~~~  251 (261)
                      +.|.|..|.|.+|..+.+++..
T Consensus        87 V~A~n~~G~G~~S~~~~~~T~~  108 (119)
T d1x5ha1          87 VAALTINGTGPATDWLSAETFE  108 (119)
T ss_dssp             CEEEETTEEEEECCCEEEECCS
T ss_pred             EEEEcCCcCCCCCCCEEEEeCC
Confidence            9999999999999888877643

>d1cfba2 b.1.2.1 (A:710-814) Neuroglian, two amino proximal Fn3 repeats {Drosophila melanogaster [TaxId: 7227]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neuroglian, two amino proximal Fn3 repeats
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.06  E-value=2.4e-09  Score=66.66  Aligned_cols=90  Identities=14%  Similarity=0.130  Sum_probs=68.2

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecC--CCCCCC-eEEEEEEEeCCccce-eE-EEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPG--YDGGLP-QTFTLELYSASDLNL-LV-NLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~--~~~~~p-~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      |+.+|.++.+.......+.|+|.+.  ...+.+ ..|.+.|+..+.... .. .........++|.+  |.++..|+|+|
T Consensus         4 P~~~P~~v~~~~~~~~si~v~W~p~~~~~~ng~i~~Y~I~y~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V   81 (105)
T d1cfba2           4 PFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIAD--QPTFVKYLIKV   81 (105)
T ss_dssp             CSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTCCEEEECS--CCSSCEEEEEE
T ss_pred             CCCCCcCeEEEEccCCeEEEEEeCCChhhcCceEEEEEEEeeeeccccceeEEEecCCCccEEEECC--CCCCCEEEEEE
Confidence            4458899999988899999999853  233334 569998887654432 22 33345567899999  99999999999


Q ss_pred             EEEcCCCcCCceeeeee
Q psy11549        231 SGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~  247 (261)
                      .|.|..|.|..|....+
T Consensus        82 ~A~N~~G~gp~S~~~v~   98 (105)
T d1cfba2          82 VAINDRGESNVAAEEVV   98 (105)
T ss_dssp             EEEETTEECSSCCCCEE
T ss_pred             EEEeCCcCCCCCCCcEe
Confidence            99999999998865543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.1e-10  Score=71.01  Aligned_cols=59  Identities=19%  Similarity=0.214  Sum_probs=47.1

Q ss_pred             CCCCeeccCCCCceEEEECC--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece
Q psy11549          1 MAGGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI   60 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~   60 (261)
                      +|||++|..+++..+...+.  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|.
T Consensus        35 ~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~~~P~   95 (101)
T d2cqva1          35 MKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSR-QAQVNLTVVDKPD   95 (101)
T ss_dssp             EESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSCEE-ECCEEEEEECSCS
T ss_pred             EeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCCEE-EEEEEEEEEecCC
Confidence            58999997555433333332  79999999999999999999999987 6788999987664

>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.6e-09  Score=65.05  Aligned_cols=87  Identities=14%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      .+|.++++.....+.+.|.|.++  .+.-..|.+.|+......... .........++|.+  |.++..|.|++.|.|..
T Consensus         3 d~P~~l~v~~vt~~sv~l~W~~p--~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~~~~   78 (94)
T d1j8ka_           3 DRPKGLAFTDVDVDSIKIAWESP--QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQG--LRPGSEYTVSVVALHDD   78 (94)
T ss_dssp             CCCCCCEEEEEETTEEEEECCCC--SSCCSCEEEEEEETTTEEEEECCCCCSSCCEEEECS--CCCCSEEEEEEEECSSS
T ss_pred             CCCCCCEEEEecCCEEEEEEeCC--CccccceEEEEEeecCCCceEEEecCCCccEEEECC--CCCCCEEEEEEEEEeCC
Confidence            46788999988999999999973  233345888887765553333 33345668899999  99999999999999999


Q ss_pred             CcCCceeeeeee
Q psy11549        237 GRSLPVIWDDFS  248 (261)
Q Consensus       237 G~~~~s~~~~~~  248 (261)
                      |.|.+......+
T Consensus        79 g~S~p~~~~~~T   90 (94)
T d1j8ka_          79 MESQPLIGTQST   90 (94)
T ss_dssp             CCCCCEEEEEEC
T ss_pred             CCcCCEEEEEEE
Confidence            998887765554

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.04  E-value=1.5e-10  Score=69.80  Aligned_cols=51  Identities=14%  Similarity=0.331  Sum_probs=41.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY   57 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~   57 (261)
                      ||||+++.      ....++.|.|.+++.+|+|.|+|+|.|..+...|..+.|+|++
T Consensus        38 ~kng~~~~------~~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          38 LQNGKDRK------YFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EETTEEEE------EEEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEcccccc------eeccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEEe
Confidence            46777763      2345678999999999999999999999887767788888874

>d1fnha1 b.1.2.1 (A:3-92) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.8e-09  Score=64.30  Aligned_cols=86  Identities=12%  Similarity=0.059  Sum_probs=65.8

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      +|.++.+.......+.|.|.+  ..+....|.+.|+......... .........++|.+  |.++..|.|++.|.|..|
T Consensus         2 pP~~l~~~~v~~~si~l~W~~--p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~n~~g   77 (90)
T d1fnha1           2 APTDLKFTQVTPTSLSAQWTP--PNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSG--LMVATKYEVSVYALKDTL   77 (90)
T ss_dssp             CCEEEEEEEECSSCEEEEEEC--CSSCCSEEEEEEEESSSCSCCCEEEECTTCCEEEECS--CCTTCEEEEEEEEEETTE
T ss_pred             CCCCEEEEEecCCEEEEEEEc--cceeccceEEEEEeeeCCCceEEEEeCCCCeEEEEec--ccCceEEEEEEEEEeCCC
Confidence            577888888999999999997  3333455777776654433222 34455668999999  999999999999999999


Q ss_pred             cCCceeeeeee
Q psy11549        238 RSLPVIWDDFS  248 (261)
Q Consensus       238 ~~~~s~~~~~~  248 (261)
                      .|.++.....+
T Consensus        78 ~s~~~~~~~~T   88 (90)
T d1fnha1          78 TSRPAQGVVTT   88 (90)
T ss_dssp             ECCCEEEEEEC
T ss_pred             CcCCEeEEEEc
Confidence            99998766543

>d1tena_ b.1.2.1 (A:) Tenascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.4e-09  Score=63.92  Aligned_cols=84  Identities=12%  Similarity=0.011  Sum_probs=65.5

Q ss_pred             CCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-eeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-LLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       157 p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      +.+|.++.+.......+.|.|.++  .+.-..|.+.|....... ............++|.+  |.++..|.|++.|.|.
T Consensus         2 ld~P~~l~v~~~s~~s~~l~W~~p--~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~~~   77 (90)
T d1tena_           2 LDAPSQIEVKDVTDTTALITWFKP--LAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGN--LKPDTEYEVSLISRRG   77 (90)
T ss_dssp             CCCCEEEEEESCCSSCEEEEEECC--SSCCSEEEEEEEETTCTTCCEEEEEETTCCEEEECS--CCTTCEEEEEEEEEET
T ss_pred             CCCCCCcEEEEecCCEEEEEEEeC--ceEeccEEEEEEEcCCCceeEEEEecCCcceeeEee--ecCCCEEEEEEEEEeC
Confidence            568889999988999999999973  333356888887654432 22334455668999999  9999999999999999


Q ss_pred             CCcCCceee
Q psy11549        236 KGRSLPVIW  244 (261)
Q Consensus       236 ~G~~~~s~~  244 (261)
                      .|.+.++..
T Consensus        78 ~g~s~~~~~   86 (90)
T d1tena_          78 DMSSNPAKE   86 (90)
T ss_dssp             TEECCCEEE
T ss_pred             CCEeCCEEE
Confidence            999887654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.3e-11  Score=71.81  Aligned_cols=54  Identities=22%  Similarity=0.305  Sum_probs=44.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI   60 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~   60 (261)
                      ||||+.+....      .+..|.|.+++.+|+|.|+|.|.|..+...|..+.|+|.++|.
T Consensus        36 ~k~g~~~~~~~------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~Pr   89 (89)
T d1f2qa2          36 YKDGEALKYWY------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR   89 (89)
T ss_dssp             EETTEECCSCC------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             EEeeecccccc------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeCCC
Confidence            57888885321      3458999999999999999999999887778889999998773

>d1x4ya1 b.1.2.1 (A:8-108) Brother of CDO precursor (BOC) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Brother of CDO precursor (BOC)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=2.2e-09  Score=66.34  Aligned_cols=93  Identities=10%  Similarity=-0.014  Sum_probs=71.5

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecC--CCCCCC-eEEEEEEEeCCccc-eeE--EEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPG--YDGGLP-QTFTLELYSASDLN-LLV--NLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~--~~~~~p-~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      |+.+|.++.+.......+.|.|.++  ...+.+ ..|.+.|+...... ..+  .........++|.+  |+++..|.|+
T Consensus         1 P~~~P~~~~~~~~s~tsi~v~W~~~~~~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~   78 (101)
T d1x4ya1           1 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISH--LQPETSYDIK   78 (101)
T ss_dssp             CCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECS--CCTTCEEEEE
T ss_pred             CCCCCcccEEEEEcCCEEEEEEecCcccccccceEEEEEEeeeccceeeeeeeEEEEcCCeeEEEEcC--CCCCCEEEEE
Confidence            4668888999989999999999853  223334 45888887644332 122  33445567899999  9999999999


Q ss_pred             EEEEcCCCcCCceeeeeeeec
Q psy11549        230 ISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      +.|.|..|.|++|..+.+.++
T Consensus        79 v~a~n~~G~s~~S~~~~~~T~   99 (101)
T d1x4ya1          79 MQCFNEGGESEFSNVMICETK   99 (101)
T ss_dssp             EEEECTTCCCCCCCCEEEECC
T ss_pred             EEEEcCCCCCCCCCcEEEEcc
Confidence            999999999999999988765

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.02  E-value=9.8e-11  Score=70.44  Aligned_cols=52  Identities=13%  Similarity=0.248  Sum_probs=41.0

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEee
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYA   58 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~   58 (261)
                      ||||+++..      ...++.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|..|
T Consensus        36 ~k~g~~~~~------~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          36 FQNGKSKKF------SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             EETTEEEEE------ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             Eeecccccc------cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            467776632      2235689999999999999999999998876677888888654

>d1wfta_ b.1.2.1 (A:) Host cell factor 2, HCF-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Host cell factor 2, HCF-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=5.2e-10  Score=71.90  Aligned_cols=93  Identities=14%  Similarity=0.105  Sum_probs=67.6

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeE-EEEEEEeCCccce------eE-EE---------ecCCCCcEEEcC
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQT-FTLELYSASDLNL------LV-NL---------TNLDTPAFTLED  217 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~------~~-~~---------~~~~~~~~~i~~  217 (261)
                      ..|.+|.++.+.. ..+.+.|+|.++.+.+.++. |.++|+.......      .+ ..         .......+.|.+
T Consensus         6 ~~P~aP~~v~v~~-~~~si~l~W~~P~~~~g~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   84 (123)
T d1wfta_           6 SGPGAPSTVRISK-NVDGIHLSWEPPTSPSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAGQLANAHID   84 (123)
T ss_dssp             SCCCCCEEEEEEE-CSSEEEEEEECCSSCCSSCCCEEEEEEECSSCCCSCSCCCEEEEEEEESCSEEEEEHHHHTTCCCB
T ss_pred             CCCcCCcccEEEe-CCCEEEEEecCchhcCCceEEEEEEEEECCCCCccccceeeeEEEecCCceeEeecCCccEEEEcC
Confidence            5788898888875 57889999998766666755 9998876443311      00 01         111124556778


Q ss_pred             CCCCCccEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        218 LGLDGTVLMRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       218 ~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                        |.+++.|.|+|.|.|..|.|++|....++..
T Consensus        85 --L~p~t~Y~frV~A~N~~G~Gp~S~~~~~~t~  115 (123)
T d1wfta_          85 --YTSRPAIVFRISAKNEKGYGPATQIRWLQGN  115 (123)
T ss_dssp             --CSSSCEEEEEEEEBSSSSBCCCEEEEEECCS
T ss_pred             --CCCCCEEEEEEEEecCCcCCCCCCcEEEEec
Confidence              9999999999999999999999998877664

>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.3e-09  Score=67.93  Aligned_cols=86  Identities=12%  Similarity=0.006  Sum_probs=57.2

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCC-CeEEEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGL-PQTFTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~-p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      .|....+.....+.+.|+|.++...+. ...|.+.|+.........  .........++|.+  |.+++.|+|+|+|.|.
T Consensus         9 ~P~~p~~~~~~~~~v~l~W~pp~~~~~~~~~y~i~y~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~frVra~n~   86 (105)
T d2d9qb2           9 MDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCG--LLPATAYTLQIRCIRW   86 (105)
T ss_dssp             CCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEECSCEEEEEECS--CCSCCCEEEEEEEEEC
T ss_pred             CCCCCEeecCCCCeEEEEEcCCCCCCceeEEEEEEEEecCCccceeeeecccCCcceeEEec--ccCCeEEEEEEEEEeC
Confidence            333344545568899999998754444 466999988754442221  22333446789999  9999999999999999


Q ss_pred             CCcCCceeeee
Q psy11549        236 KGRSLPVIWDD  246 (261)
Q Consensus       236 ~G~~~~s~~~~  246 (261)
                      .|.|.+|.+..
T Consensus        87 ~g~G~~S~wS~   97 (105)
T d2d9qb2          87 PLPGHWSDWSP   97 (105)
T ss_dssp             SSCCCCCCCCC
T ss_pred             CCCCCCcCCCC
Confidence            99877666543

>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-4 receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.5e-10  Score=70.76  Aligned_cols=89  Identities=16%  Similarity=0.233  Sum_probs=56.7

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecCCCCCC-C---eEEEEEEEeCCccceeE--EEe-cCCCCcEEEcCCCCCCccEEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPGYDGGL-P---QTFTLELYSASDLNLLV--NLT-NLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~-p---~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      +|.+|.++.+.....+.+.|.|..+...+. .   ..|.+.|+.........  ... ......+.|.+  |.++..|.|
T Consensus         1 kP~~P~~l~v~~~~~~s~~v~W~~P~~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~   78 (101)
T d1iarb2           1 KPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAAST--LKSGISYRA   78 (101)
T ss_dssp             CCCCCEEEEEC----CCEEEEEECSSCTTSTTGGGCEEEEEEEESSSCSCEEEEEECSSCCEEEECC-------CCCEEE
T ss_pred             CcccCCcCEEEEEeCCeEEEEEccccCCCCccceeeEEEEeeecccceeeeeeeeeccCccceEEEECC--CCCCCEEEE
Confidence            488999999988889999999997644332 2   34888887765543222  222 22234567778  999999999


Q ss_pred             EEEEEcCCCcCCceeeee
Q psy11549        229 VISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       229 ~~~a~N~~G~~~~s~~~~  246 (261)
                      +|+|.|..|.|.+|++..
T Consensus        79 rVrA~~~~g~g~wSewS~   96 (101)
T d1iarb2          79 RVRAWAQAYNTTWSEWSP   96 (101)
T ss_dssp             EEEEECGGGTCCCCCCCC
T ss_pred             EEEEEcCCCCCCCcCCCC
Confidence            999999999888777654

>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.6e-09  Score=63.30  Aligned_cols=84  Identities=20%  Similarity=0.328  Sum_probs=65.6

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      .||.++++.......+.|.|.++  .+.-..|.+.|...................+.|.+  |.+++.|.|++.|.|..|
T Consensus         3 spP~~l~v~~~~~~si~v~W~~p--~~~~~~Y~i~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~~~~g   78 (90)
T d1fnha2           3 SPPRRARVTDATETTITISWRTK--TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITG--LQPGTDYKIYLYTLNDNA   78 (90)
T ss_dssp             CCCEEEEEEEECSSEEEEEEECC--SSCCCCEEEEEEESSSSCCEEEECCTTCSEEEEES--CCTTCEEEEEEEEEETTE
T ss_pred             CcCCCCEEEEecCCEEEEEEECC--CCCCceeEEEEEEccCCceEEEecCCCccEEEeCC--CCCCcEEEEEEEEEeCCC
Confidence            57888999989999999999973  23334588888876554333344455678999999  999999999999999999


Q ss_pred             cCCceeee
Q psy11549        238 RSLPVIWD  245 (261)
Q Consensus       238 ~~~~s~~~  245 (261)
                      .+.+....
T Consensus        79 ~s~p~~~~   86 (90)
T d1fnha2          79 RSSPVVID   86 (90)
T ss_dssp             ECCCEEEE
T ss_pred             CcCCEEEE
Confidence            98866544

>d2b5ic1 b.1.2.1 (C:130-224) Cytokine receptor common gamma chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor common gamma chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=3.3e-09  Score=64.59  Aligned_cols=78  Identities=12%  Similarity=0.092  Sum_probs=61.3

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      .|.+|.++++.....+.+.|+|.++.. +....|.+.|+........ .........++|.+  |.++..|+|+|+|.+.
T Consensus         2 ~P~~P~nl~v~~~~~~~v~l~W~~p~~-~~~~~y~v~y~~~~~~~~~-~~~~~~~~~~~~~~--L~p~t~Y~frVRa~~~   77 (95)
T d2b5ic1           2 IPWAPENLTLHKLSESQLELNWNNRFL-NHCLEHLVQYRTDWDHSWT-EQSVDYRHKFSLPS--VDGQKRYTFRVRSRFN   77 (95)
T ss_dssp             ECCCCEEEEEEEEETTEEEEEEECSSC-STTCEEEEEEEETTCSSCE-EEEECSSCEEEECS--CCTTSCEEEEEEEECC
T ss_pred             CCcCCCCCEEEEEeCCEEEEEECCCCC-ceeEEEEEEEEcCCCceee-EeeecccceeEcCC--CCCCCEEEEEEEEeeC
Confidence            488999999998889999999997543 3456799999887665322 33344568899999  9999999999999866


Q ss_pred             CC
Q psy11549        236 KG  237 (261)
Q Consensus       236 ~G  237 (261)
                      .+
T Consensus        78 ~~   79 (95)
T d2b5ic1          78 PL   79 (95)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.01  E-value=4.4e-10  Score=67.74  Aligned_cols=51  Identities=25%  Similarity=0.451  Sum_probs=41.7

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|||++|..  + +....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        38 ~~~~~~i~~--~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V   88 (89)
T d1biha4          38 SHNAKPLSG--G-RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK-YFETLVQV   88 (89)
T ss_dssp             EETTEECCS--S-SEEEETTEEEESSCCSTTCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EeCCccCcc--c-cEEEeeeeEEECCCChhhCEEEEEEEEECCCEE-EEEEEEEE
Confidence            579999953  3 344567789999999999999999999999987 66677776

>d2b5ib2 b.1.2.1 (B:104-207) Interleukin-2 receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-2 receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=3.6e-09  Score=65.69  Aligned_cols=92  Identities=14%  Similarity=-0.017  Sum_probs=65.8

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecCCCCCC---CeEEEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPGYDGGL---PQTFTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~---p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .+.+|.++++.......+.|+|..+.....   ...|.+.++.........  .........+.|.+  |.+++.|+|+|
T Consensus         2 rl~pP~~l~v~~~~~~s~~l~W~~p~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~rV   79 (104)
T d2b5ib2           2 RLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLET--LTPDTQYEFQV   79 (104)
T ss_dssp             CCCCCEEEEEEEECSSCEEEEEECCSCCGGGTTCEEEEEEEECTTSCSTTSCCEEECSCCCEEEECS--CCTTCEEEEEE
T ss_pred             ccCCCCCcEEEEEeCCEEEEEEccccccccccceeEEEEEEecccccceeeeEEecCCCcEEEEECC--CCCCCEEEEEE
Confidence            467899999999999999999997544322   234667666654432221  33444567899999  99999999999


Q ss_pred             EEEcCCCc----CCceeeeeeee
Q psy11549        231 SGVNAKGR----SLPVIWDDFSM  249 (261)
Q Consensus       231 ~a~N~~G~----~~~s~~~~~~~  249 (261)
                      +|.|..|.    |++|..+.+.+
T Consensus        80 ra~~~~g~~g~wS~wS~~v~~~T  102 (104)
T d2b5ib2          80 RVKPLQGEFTTWSPWSQPLAFRT  102 (104)
T ss_dssp             EEEESCCSSCCCCCCCCCEEEEC
T ss_pred             EEEECCCCCCCCCCCcCCEEEEC
Confidence            99999884    45565555544

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.00  E-value=4.3e-10  Score=69.18  Aligned_cols=55  Identities=22%  Similarity=0.343  Sum_probs=44.7

Q ss_pred             CCCCeeccCCCCceEEE-ECC--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIIL-SNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~-~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||||.+|..+....... .++  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        39 ~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~~L~V~   96 (98)
T d1g1ca_          39 YKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGET-SSHAFLLVQ   96 (98)
T ss_dssp             EETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEE-EEEEEEEEE
Confidence            58999998665544443 333  79999999999999999999999987 667888885

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.9e-10  Score=68.98  Aligned_cols=56  Identities=25%  Similarity=0.314  Sum_probs=44.7

Q ss_pred             CCCCeeccCCCCceEEEEC----CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSN----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +|||.+|..+....+...+    ..|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        31 ~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          31 VKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             EETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEE
T ss_pred             EEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEEE
Confidence            5899999755544444433    3799999999999999999999999876778888885

>d1fnfa3 b.1.2.1 (A:1327-1415) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.8e-09  Score=62.71  Aligned_cols=84  Identities=13%  Similarity=0.076  Sum_probs=64.4

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce-eEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL-LVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      .+|.++.+.....+.+.|+|.++  .+.-..|.+.|+....... ...........+.|.+  |.++..|.|++.|.|..
T Consensus         2 d~P~~l~v~~vt~~sv~l~W~~p--~~~~~~Y~i~~~~~~~~~~~~~~~v~~~~~~~~i~~--L~p~t~Y~~~V~a~~~~   77 (89)
T d1fnfa3           2 DSPTGIDFSDITANSFTVHWIAP--RATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTN--LTPGTEYVVSIVALNGR   77 (89)
T ss_dssp             CCCEEEEEESCCSSEEEEEEECC--SSCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEES--CCTTCEEEEEEEEEETT
T ss_pred             ccCcCCEEEEecCCEEEEEEEeC--CCEEeeEEEEEEECCCCCceEEEEECCCccEEEECC--CcccCEEEEEEEEEcCC
Confidence            47888899989999999999973  3333568888876554422 2233445668999999  99999999999999999


Q ss_pred             CcCCceeee
Q psy11549        237 GRSLPVIWD  245 (261)
Q Consensus       237 G~~~~s~~~  245 (261)
                      |.|++....
T Consensus        78 g~s~p~~~~   86 (89)
T d1fnfa3          78 EESPLLIGQ   86 (89)
T ss_dssp             EECCCEEEE
T ss_pred             cCcCCEEEE
Confidence            988775543

>d1x5ia1 b.1.2.1 (A:8-120) Neogenin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Neogenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.7e-09  Score=67.35  Aligned_cols=87  Identities=18%  Similarity=0.267  Sum_probs=66.5

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      ..|.+|.++.+.. ..+.+.|.|.++...+.++ .|.+.|+........ .........++|.+  |.++..|.|++.|.
T Consensus        19 ~vP~~P~~~~~~~-~~~si~v~W~~p~~~~g~i~~Y~i~~~~~~~~~~~-~~~~~~~~~~~i~~--L~p~t~Y~~~V~A~   94 (113)
T d1x5ia1          19 RVPEVPSSLHVRP-LVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQT-IKVDYKQRYYTIEN--LDPSSHYVITLKAF   94 (113)
T ss_dssp             SCCCSCSEEEEEE-ETTEEEEEEECCSCTTBCCCEEEEEECSSCGGGEE-EECCTTCCEEEECS--CCSSCEECCEEEEE
T ss_pred             CCCCCCEeeeeee-CCCEEEEEEEccccCCccEEEEEEEeeecccccee-eeeeCCccEEEEec--cccCcEEEEEEEEE
Confidence            5678888888865 4679999999766555554 599988766554322 33344568899999  99999999999999


Q ss_pred             cCCCcCCceeee
Q psy11549        234 NAKGRSLPVIWD  245 (261)
Q Consensus       234 N~~G~~~~s~~~  245 (261)
                      |..|.|.++...
T Consensus        95 n~~G~g~~~~~~  106 (113)
T d1x5ia1          95 NNVGEGIPLYES  106 (113)
T ss_dssp             CSSCBCCCCCCC
T ss_pred             CCCcCCCCeeeE
Confidence            999999875543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.4e-10  Score=71.51  Aligned_cols=59  Identities=20%  Similarity=0.214  Sum_probs=47.5

Q ss_pred             CCCCeeccCCCCceEEEEC---------CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece
Q psy11549          1 MAGGIPLAHNTSARIILSN---------QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI   60 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~---------~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~   60 (261)
                      +|||++|..+........+         ..|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.
T Consensus        35 ~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~-~~~i~v~v~~~P~  102 (107)
T d1he7a_          35 LFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFMDNPF  102 (107)
T ss_dssp             EETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEECCCSCTT
T ss_pred             EEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEE-EEEEEEEEEcCCC
Confidence            5899999765554444433         259999999999999999999999987 7778888887774

>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=7.3e-09  Score=64.00  Aligned_cols=92  Identities=15%  Similarity=0.113  Sum_probs=69.6

Q ss_pred             CCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       157 p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      |.+|.++.+.....+.+.|+|.++  .+.-..|.+.|...+..... .........++|.+  |.++..|.|++.|.|..
T Consensus         1 P~~P~~l~~~~~t~~si~l~W~~p--~~~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~l~~--L~p~t~Y~~~V~a~~~~   75 (102)
T d2cuha1           1 PDGPTQLRALNLTEGFAVLHWKPP--QNPVDTYDIQVTAPGAPPLQ-AETPGSAVDYPLHD--LVLHTNYTATVRGLRGP   75 (102)
T ss_dssp             CSSCEEEECCCCSSSCEEEEEECC--SSCCSEEEEEEECSSSCCEE-EEEETTCSEEEECS--CCSSSEEEEEEEEEETT
T ss_pred             CcCCCccEEEEeCCCEEEEEEEee--eccceeeEEEEEecccccee-eeeeeeeeeEEEcc--EEeeEEEEEEEEEEeCC
Confidence            567888888888899999999973  23335699988775544322 33345568999999  99999999999999999


Q ss_pred             CcCCceeeeeeeecccc
Q psy11549        237 GRSLPVIWDDFSMSGAH  253 (261)
Q Consensus       237 G~~~~s~~~~~~~~~~~  253 (261)
                      |.++++.....+...++
T Consensus        76 ~~s~~~~~~~~T~~~~P   92 (102)
T d2cuha1          76 NLTSPASITFTTGLEAP   92 (102)
T ss_dssp             EECCCEEEEEESCCCCT
T ss_pred             CCcCCEEEEEECCCCCC
Confidence            99988876655544443

>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.97  E-value=1.1e-08  Score=61.12  Aligned_cols=83  Identities=16%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      +|.++.+.......+.|+|.++  .+.-..|.+.|+........ .........++|.+  |.++..|.|++.|.|..|.
T Consensus         2 aP~~l~v~~~t~~sv~v~W~~p--~~~~~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~~~--L~p~t~Y~v~V~a~~~~~~   76 (87)
T d1qr4a1           2 NPKDLEVSDPTETTLSLRWRRP--VAKFDRYRLTYVSPSGKKNE-MEIPVDSTSFILRG--LDAGTEYTISLVAEKGRHK   76 (87)
T ss_dssp             CCEEEEEESCCSSEEEEEEECC--SSCCSEEEEEEECTTCCEEE-EEECTTCSEEEEES--CCSSCEEEEEEEEESSSCB
T ss_pred             cCcCcEEEEecCCEEEEEEECC--CCCcceeEEEeecCCcceeE-EeCCCCcCEEEECC--CCcCCEEEEEEEEEcCCCC
Confidence            6788888888899999999973  23335699988876655322 33345668999999  9999999999999999999


Q ss_pred             CCceeeee
Q psy11549        239 SLPVIWDD  246 (261)
Q Consensus       239 ~~~s~~~~  246 (261)
                      |+++....
T Consensus        77 s~~~~~~~   84 (87)
T d1qr4a1          77 SKPTTIKG   84 (87)
T ss_dssp             CCCEEEEE
T ss_pred             ccCEEEEE
Confidence            98876543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.9e-10  Score=68.89  Aligned_cols=46  Identities=13%  Similarity=0.226  Sum_probs=40.6

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA   46 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~   46 (261)
                      ++||++|..+..++....+++|.|.+++.+|+|.|+|.|.|..+..
T Consensus        31 ~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1          31 KFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK   76 (92)
T ss_dssp             EESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred             ecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCE
Confidence            4789999877777777888999999999999999999999988765

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.5e-10  Score=70.55  Aligned_cols=59  Identities=20%  Similarity=0.315  Sum_probs=45.7

Q ss_pred             CCCCeeccCCCCceEEEE-C-----CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeece
Q psy11549          1 MAGGIPLAHNTSARIILS-N-----QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPI   60 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~-~-----~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~   60 (261)
                      ||||++|..+........ +     ..|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..+|.
T Consensus        37 ~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~V~~~P~  101 (105)
T d1wwca_          37 LHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGHFLKEPF  101 (105)
T ss_dssp             EETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEECCSCCCC
T ss_pred             EeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEE-EEEEEEEEEeCCC
Confidence            589999975544333222 2     369999999999999999999999987 6778888876663

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.94  E-value=8.6e-10  Score=68.33  Aligned_cols=55  Identities=25%  Similarity=0.416  Sum_probs=43.8

Q ss_pred             CCCCeeccCCCCceEEEEC---CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSN---QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~---~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||||++|..+....+...+   .+|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus        43 ~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~  100 (102)
T d1fhga_          43 FKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEA-TCTAELLVE  100 (102)
T ss_dssp             EETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEE-EEEEEEEEE
Confidence            5899999765543433332   379999999999999999999999987 667888875

>d2gysa2 b.1.2.1 (A:104-217) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.4e-09  Score=67.76  Aligned_cols=94  Identities=12%  Similarity=0.010  Sum_probs=64.8

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCC-------CeEEEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGL-------PQTFTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVL  225 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~-------p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~  225 (261)
                      .+|.+|.++.+.. .++.+.|+|.++...+.       ...|.+.++..+......  .........+.+.+  |.++..
T Consensus         4 vkP~pP~nl~v~~-~~~~~~lsW~~P~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~p~t~   80 (114)
T d2gysa2           4 VQPPEPRDLQIST-DQDHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEH--LMPSST   80 (114)
T ss_dssp             BCCCCCEEEEEEE-ETTEEEEEEECCC-----CCSCGGGEEEEEEEEETTSCSTTCEEEEESSSEEEECTTT--CCTTCE
T ss_pred             ccCCcCCCeEEEE-eCCEEEEECCCCcccccccceeeeEEEEEEEEeccCCceEEEEEeeccCceEEEEeCC--CCCCcE
Confidence            4688999999864 56789999998654321       235888888766543222  22333445667777  999999


Q ss_pred             EEEEEEEEcCCCc------CCceeeeeeeecc
Q psy11549        226 MRVVISGVNAKGR------SLPVIWDDFSMSG  251 (261)
Q Consensus       226 Y~~~~~a~N~~G~------~~~s~~~~~~~~~  251 (261)
                      |.|+|+|.|..|.      |++|..+...++.
T Consensus        81 Y~~rVRa~~~~g~~~~g~wS~WS~~v~~~t~p  112 (114)
T d2gysa2          81 YVARVRTRLAPGSRLSGRPSKWSPEVCWDSQP  112 (114)
T ss_dssp             EEEEEEEEECTTSSCCBCCCCCCCCEEEECCC
T ss_pred             EEEEEEEEeCCCCCCCCCccCCcCCEeeeCcC
Confidence            9999999999985      5667777776553

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.94  E-value=7e-10  Score=68.02  Aligned_cols=56  Identities=27%  Similarity=0.439  Sum_probs=43.7

Q ss_pred             CCCCeeccCCCCceEEE----ECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIIL----SNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~----~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||||+++..+...+...    ...+|.|.+++.+|+|.|+|.|.|..|...+.++.|.|.
T Consensus        38 ~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          38 FKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             EETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             EEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            58999997554433332    234899999999999999999999999876677888873

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=1.3e-09  Score=67.18  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=37.6

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCc
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGE   45 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~   45 (261)
                      ||||++|..+ +++....+++|.|.+++.+|+|.|+|.|.|..+.
T Consensus        40 ~kdg~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          40 YKDCKPLLLD-NIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EETTEECCCC-SSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EECCccccCC-CcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            5899999754 4466778889999999999999999999988764

>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.7e-08  Score=61.16  Aligned_cols=84  Identities=12%  Similarity=0.063  Sum_probs=65.3

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      .+|.++.+.......+.|+|.++  .+....|.+.|+..+... ...........+.|.+  |.++..|.|++.|.|..|
T Consensus         3 ~~P~~l~~~~~~~~sv~l~W~~p--~~~~~~Y~v~~~~~~~~~-~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~~~~g   77 (93)
T d2cuma1           3 EAPRDLEAKEVTPRTALLTWTEP--PVRPAGYLLSFHTPGGQT-QEILLPGGITSHQLLG--LFPSTSYNARLQAMWGQS   77 (93)
T ss_dssp             CCCEEEEEESCCSSCEEEEEECC--SSCCSEEEEEEECTTSCE-EEEEECSSCSEEEECS--CCTTCEEEEEEEEEBTTB
T ss_pred             CcCCCCEEEEeCCCEEEEEEEcc--ccccccEEEEEEcccccc-EEEEECCCccEEEEeC--ccCCCEEEEEEEEEeCCC
Confidence            47788888888899999999973  333456999888765442 2233345568899999  999999999999999999


Q ss_pred             cCCceeeee
Q psy11549        238 RSLPVIWDD  246 (261)
Q Consensus       238 ~~~~s~~~~  246 (261)
                      .+.++....
T Consensus        78 ~s~~~~~~~   86 (93)
T d2cuma1          78 LLPPVSTSF   86 (93)
T ss_dssp             CCCCEEEEE
T ss_pred             CCCCEEEEE
Confidence            998876443

>d1tdqa1 b.1.2.1 (A:1-93) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=1.8e-08  Score=61.04  Aligned_cols=84  Identities=14%  Similarity=0.057  Sum_probs=66.1

Q ss_pred             CCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce-eEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL-LVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       157 p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      +.+|.++.+.....+.+.|+|.+  +.+....|.+.|+....... ...........++|.+  |.++..|.|++.|.|.
T Consensus         4 ~~~P~~l~v~~v~~~si~v~W~~--p~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~v~V~a~~~   79 (93)
T d1tdqa1           4 IDGPTQILVRDVSDTVAFVEWTP--PRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQA--LRPGSRYEVSISAVRG   79 (93)
T ss_dssp             SCCCEEEEEEEECSSCEEEEEEC--CSSCCSEEEEEEEESSSSCCCEEEEECTTCSEEEECS--CCTTCEEEEEEEEEET
T ss_pred             CCcCCCCEEEEeCCCEEEEEEEc--cccCCCceEEEEEeccCcceeeEEEeCCCceEEEEeC--cccceEEEEEEEEEeC
Confidence            45788888988899999999997  33444568888877655422 2344555668999999  9999999999999999


Q ss_pred             CCcCCceee
Q psy11549        236 KGRSLPVIW  244 (261)
Q Consensus       236 ~G~~~~s~~  244 (261)
                      .|.++++..
T Consensus        80 ~g~s~~~~~   88 (93)
T d1tdqa1          80 TNESDASST   88 (93)
T ss_dssp             TEECCCEEE
T ss_pred             CCCcCCEEE
Confidence            999988764

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.93  E-value=7.7e-10  Score=66.97  Aligned_cols=55  Identities=15%  Similarity=0.368  Sum_probs=43.3

Q ss_pred             CCCCeeccCCCCceEEEE--CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILS--NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~--~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +|||++|..+........  ..+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        34 ~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   90 (91)
T d1tnna_          34 LRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ-EAEFTLTIQ   90 (91)
T ss_dssp             ESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC-CEEEEEECC
T ss_pred             EEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            589999976554333333  3589999999999999999999999987 566777774

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=1.7e-08  Score=64.86  Aligned_cols=86  Identities=13%  Similarity=0.189  Sum_probs=55.6

Q ss_pred             EEeeCCCcEEEEEEEeeCC--CCceeEEEEcCCcccccc--------------CCceEEe-----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP--PARSFKWKFNNSGETLDV--------------GSERFSS-----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~~~--------------~~~~~~~-----~~~~~~l~i~~~~~~  127 (261)
                      +.+..|++++|+|.+....  ....+.|++.+.......              ...+...     ......|.|.++..+
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   91 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS   91 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGG
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchh
Confidence            6678999999999986433  233689998653211100              0011111     223568999999999


Q ss_pred             cCeEEEEEEEcCCceEEeeEEEEEEeCCC
Q psy11549        128 DYGTLSCAAQNAIGTQVTPCLYQVVLAGK  156 (261)
Q Consensus       128 d~g~y~C~~~~~~~~~~~~~~~~v~~~~~  156 (261)
                      |+|.|+|.+.+..+....  .+.+.|.+|
T Consensus        92 D~G~Y~C~v~~~~~~~~~--~v~L~V~~P  118 (126)
T d1pkoa_          92 DEGGYTCFFRDHSYQEEA--AVELKVEDP  118 (126)
T ss_dssp             GCEEEEEEEEETTEEEEE--EEEEEEECT
T ss_pred             HCeEEEEEEEECCCEEEE--EEEEEEeCC
Confidence            999999999988766655  445555443

>d1cd9b2 b.1.2.1 (B:108-213) Granulocyte colony-stimulating factor (GC-SF) receptor {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Granulocyte colony-stimulating factor (GC-SF) receptor
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=4.4e-09  Score=65.50  Aligned_cols=85  Identities=13%  Similarity=0.066  Sum_probs=57.7

Q ss_pred             CCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccc-e-eEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        160 PQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLN-L-LVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       160 p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      |....+.....+.+.|.|.++...+.. ..|.+.|+...... . ...........+.|.+  |.+++.|+|+|+|.|..
T Consensus        11 P~~p~~~~~~~~~i~v~W~pp~~~~~~~~~Y~i~y~~~~~~~~w~~v~~~~~~~~~~~l~~--L~p~t~Y~frVra~~~~   88 (106)
T d1cd9b2          11 DIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCG--LHQAPVYTLQMRCIRSS   88 (106)
T ss_dssp             CC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSTTCCCEEEEEEESCEEEEEECC--CCSCSCEEEEEEEEESS
T ss_pred             CCCCeEecCCCCEEEEEEcCcccCCccceEEEEEEeeccccccceeeecccCCceEEEEec--cCCCeEEEEEEEEEeCC
Confidence            333344445688999999976555444 66999998644332 1 2233334557889999  99999999999999999


Q ss_pred             CcCCceeeee
Q psy11549        237 GRSLPVIWDD  246 (261)
Q Consensus       237 G~~~~s~~~~  246 (261)
                      |.+.+|.+..
T Consensus        89 g~g~wS~wS~   98 (106)
T d1cd9b2          89 LPGFWSPWSP   98 (106)
T ss_dssp             SCCCCCCCCC
T ss_pred             CCCCCcCCCC
Confidence            9877777654

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.92  E-value=8.1e-10  Score=69.36  Aligned_cols=76  Identities=24%  Similarity=0.361  Sum_probs=54.4

Q ss_pred             EEeeCCCcEEEEEEE-eeCCCCceeEEEEcCCcccccc----CCceEEeCCceeEEEEecCCCCcCe---EEEEEEEcCC
Q psy11549         69 VGASRSESVDIHCAV-EADPPARSFKWKFNNSGETLDV----GSERFSSGSRGSMLRYTPVTELDYG---TLSCAAQNAI  140 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~-~~~~~~~~~~W~~~~~~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~g---~y~C~~~~~~  140 (261)
                      ..+.+|+++.|.|.+ .+.|.| .+.|++++.......    ...++.... ...|.|.++..+|+|   .|+|.|.|..
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p-~v~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGP-DGNLYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCC-EEEEEEEETTSCGGGCCCCCCTTEEECT-TSCEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             ccccCCCeEEEEEEcccCCCCC-EEEEEeCCccccccccceeeeeeecccc-ccccEEeeeEeeccCCceEEEEEEEeCC
Confidence            456799999999986 788888 899999865322111    111222222 236999999998877   7999999998


Q ss_pred             ceEEee
Q psy11549        141 GTQVTP  146 (261)
Q Consensus       141 ~~~~~~  146 (261)
                      |.....
T Consensus        90 g~~~~~   95 (111)
T d1biha2          90 VDEEVV   95 (111)
T ss_dssp             CSSCEE
T ss_pred             CCceEE
Confidence            876653

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.92  E-value=9.8e-10  Score=66.81  Aligned_cols=55  Identities=20%  Similarity=0.262  Sum_probs=44.1

Q ss_pred             CCCCeeccCCCCceEEEECC--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +|||++|..+........+.  +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        37 ~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~~l~V~   93 (93)
T d1wiua_          37 TVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGED-EAIFEVIVQ   93 (93)
T ss_dssp             ECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECCCEE-EEEEEEEEC
Confidence            58899997665544444443  89999999999999999999999987 667777773

>d2dtge1 b.1.2.1 (E:808-909) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.4e-11  Score=74.33  Aligned_cols=94  Identities=11%  Similarity=-0.042  Sum_probs=69.8

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeE---EEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLV---NLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .+|..|..+++.....+.+.|+|.++...+.+ ..|.+.|+.........   .........+.|.+  |.++ .|.|++
T Consensus         3 ~~~d~P~~v~~~~~~~~sv~l~W~pP~~~ng~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~~-tY~~rV   79 (102)
T d2dtge1           3 KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRG--LSPG-NYSVRI   79 (102)
T ss_dssp             CCCCCCCCCCCCSSSSSCCCCCCCCCCSCSSCEEEECCCCBSSSBCCCCCCCCSSSCCCTTCCCCCS--CCSS-EECCCC
T ss_pred             CCCCCCCCCEEEEECCCEEEEEEEeCCCCcceEEEeeeEEEecCCCCceeeeeeecccceEEEEEec--ccee-eEEEEE
Confidence            46677777777777899999999976555555 45888887655442222   12223445688888  8886 699999


Q ss_pred             EEEcCCCcCCceeeeeeeecc
Q psy11549        231 SGVNAKGRSLPVIWDDFSMSG  251 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~~~~~  251 (261)
                      .|.|..|.|++|..+.++++.
T Consensus        80 ~A~n~~G~g~~S~~v~f~~~e  100 (102)
T d2dtge1          80 RATSLAGNGSWTEPTYFYVTD  100 (102)
T ss_dssp             CEEETTBCCCCCCCCEECCCC
T ss_pred             EEEcCCccCCCCCCEEEEccC
Confidence            999999999999999998764

>d1owwa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=1.2e-08  Score=61.54  Aligned_cols=85  Identities=11%  Similarity=0.070  Sum_probs=60.3

Q ss_pred             CCCcceEEee--cCCeEEEEeecCCCCCCCeE-EEEEEEeCCccce-eEEEecCCCCcEEEcCCCCCCccEEEEEEEEEc
Q psy11549        159 PPQNCSVRNE--TTSSVHISCTPGYDGGLPQT-FTLELYSASDLNL-LVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVN  234 (261)
Q Consensus       159 ~p~~~~v~~~--~~~~~~l~c~~~~~~~~p~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N  234 (261)
                      .|.++.+...  ..+.+.|+|.++  .+.++. |.+.|+..+.... ...........++|.+  |.++..|+|++.|.|
T Consensus         2 aP~~~~vt~~~~~~~s~~vsW~~P--~~~~i~~Y~i~y~~~~~~~~~~~~~v~~~~~~~~l~g--L~P~t~Y~v~v~av~   77 (93)
T d1owwa_           2 GPVEVFITETPSQPNSHPIQWNAP--QPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKG--LKPGVVYEGQLISIQ   77 (93)
T ss_dssp             CCCEEECCCCSSCTTCEEEEEECC--SSSCEEEEEEEEEETTCSSCCEEEEECSSCCEEEECS--CCSSEEEEEEEEEEE
T ss_pred             cCcccEEEEccCCCCEEEEEeecc--cccceeEEEEEEeeccccceeeeeccCCCccEEEECC--cccCcEEEEEEEEEe
Confidence            3444444433  347899999974  334544 9999987544432 2233345668899999  999999999999999


Q ss_pred             CCCcCCceeeeee
Q psy11549        235 AKGRSLPVIWDDF  247 (261)
Q Consensus       235 ~~G~~~~s~~~~~  247 (261)
                      ..|.++.+.....
T Consensus        78 ~~G~s~~~~~~~t   90 (93)
T d1owwa_          78 QYGHQEVTRFDFT   90 (93)
T ss_dssp             SSSCEEEEEEEEE
T ss_pred             CCCccCcEEEEEE
Confidence            9999988875443

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.7e-10  Score=69.61  Aligned_cols=60  Identities=18%  Similarity=0.175  Sum_probs=46.6

Q ss_pred             CCCCeeccCCCCceEEEE-------CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeecee
Q psy11549          1 MAGGIPLAHNTSARIILS-------NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC   61 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~-------~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~   61 (261)
                      +|||++|..+........       .++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|...|.+
T Consensus        36 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          36 FYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKD-EKQISAHFMGWPGI  102 (103)
T ss_dssp             EETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECCSCCCCC
T ss_pred             EECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEE-EEEEEEEEEeCCCC
Confidence            589999975443333221       1369999999999999999999999998 77888888777653

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.5e-10  Score=69.61  Aligned_cols=75  Identities=15%  Similarity=0.069  Sum_probs=49.2

Q ss_pred             EEeeCCCcEEEEEEEeeC-C-CCceeEEEEcCCccccccCCceE--EeCCceeEEEEecCCCCcCeEEEEEEEcCCceEE
Q psy11549         69 VGASRSESVDIHCAVEAD-P-PARSFKWKFNNSGETLDVGSERF--SSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQV  144 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~-~-~~~~~~W~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~  144 (261)
                      ..+.+|+.++|.|.+.+. | +..++.|++++..... ......  ......+.|.+.....+|.|.|+|+|.|..+...
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~   90 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHY-ETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRG   90 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEE-EECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGT
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeee-cccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCC
Confidence            346799999999999874 3 2337999998742111 111111  1122344677777788888899999999876443

>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=9.8e-09  Score=62.09  Aligned_cols=84  Identities=21%  Similarity=0.182  Sum_probs=62.8

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcccee-E--EEecCCCCcEEEcCCCCCCccEEEEEEEEEc
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL-V--NLTNLDTPAFTLEDLGLDGTVLMRVVISGVN  234 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N  234 (261)
                      .+|.++.+.......+.|.|.++  .+....|.+.|+........ .  .........++|.+  |.++..|.|++.|.|
T Consensus         2 daP~~l~v~~~~~~sv~v~W~~p--~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~~   77 (92)
T d1tdqa2           2 DAPKNLRVGSRTATSLDLEWDNS--EAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTD--LVPGTEYGVGISAVM   77 (92)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECC--SSCCSEEEEEEEETTCCCCEEEEEECCSSSEEEEEECS--CCTTCEEEEEEEEEE
T ss_pred             ccCcCCEEEEecCCEEEEEEEec--CCcccceEEEEEEcCCCcceeeEEEecCCCeeEEEECC--ccCCCEEEEEEEEEe
Confidence            36778888888899999999973  33345688888765443222 2  22233446799999  999999999999999


Q ss_pred             CCCcCCceeee
Q psy11549        235 AKGRSLPVIWD  245 (261)
Q Consensus       235 ~~G~~~~s~~~  245 (261)
                      ..|.|+++...
T Consensus        78 ~~g~s~p~~~~   88 (92)
T d1tdqa2          78 NSKQSIPATMN   88 (92)
T ss_dssp             TTEECCCEEEE
T ss_pred             CCCEecCEEEE
Confidence            99999888544

>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.7e-08  Score=60.84  Aligned_cols=84  Identities=15%  Similarity=0.119  Sum_probs=63.8

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      +|.++.+.......+.|.|.++. ++....|.+.|+......... .........++|.+  |.++..|+|+|.|.|..|
T Consensus         3 pP~~l~~~~~~~~sv~l~W~~p~-~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~~~~g   79 (91)
T d1fnfa2           3 PPTDLRFTNIGPDTMRVTWAPPP-SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTN--LLPGTEYVVSVSSVYEQH   79 (91)
T ss_dssp             CCEEEEEESCCSSCEEEEEECCT-TCCCSEEEEEEEETTCTTCCEEEEECTTCCEEEECS--CCTTCEEEEEEEEEETTE
T ss_pred             cCCceEEEEeCCCEEEEEEEecC-CCCcceeEEEEEECCCCccEEEEEeCCCceEEEEec--eeCCCEEEEEEEEEcCCC
Confidence            67888888888999999999732 223346999888755543222 33445668899999  999999999999999999


Q ss_pred             cCCceeee
Q psy11549        238 RSLPVIWD  245 (261)
Q Consensus       238 ~~~~s~~~  245 (261)
                      .|++....
T Consensus        80 ~S~p~~~~   87 (91)
T d1fnfa2          80 ESTPLRGR   87 (91)
T ss_dssp             ECCCEEEE
T ss_pred             CCCCEEEE
Confidence            88765543

>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Growth hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=5.8e-09  Score=64.92  Aligned_cols=91  Identities=8%  Similarity=0.054  Sum_probs=65.0

Q ss_pred             CCCCCcceEEee------cCCeEEEEeecCCCCC-----CCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccE
Q psy11549        157 PQPPQNCSVRNE------TTSSVHISCTPGYDGG-----LPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVL  225 (261)
Q Consensus       157 p~~p~~~~v~~~------~~~~~~l~c~~~~~~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~  225 (261)
                      |.||.++.+...      ....+.|+|.++....     ....|.+.|+..+..... .........+.|.+  |.++..
T Consensus         1 PdPP~~l~~t~~~~s~~~~~~~v~vsW~pP~~~~~~~~~~~l~Y~v~y~~~~~~~w~-~~~~~~~~~~~i~~--L~~~t~   77 (106)
T d1axib2           1 PDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWK-MMDPILTTSVPVYS--LKVDKE   77 (106)
T ss_dssp             CCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCSSCE-ECCCBSSSEEEEEE--EETTSC
T ss_pred             CcCCCCceeeEeeeccccccCeEEEEEcCCCccCCCCCeeEEEEEEeeeecCCccce-eeeecccceEEECC--CCCCCE
Confidence            667877776532      1346999999764322     235699999887665321 23334568999999  999999


Q ss_pred             EEEEEEEEcCCC--cCCceeeeeeeec
Q psy11549        226 MRVVISGVNAKG--RSLPVIWDDFSMS  250 (261)
Q Consensus       226 Y~~~~~a~N~~G--~~~~s~~~~~~~~  250 (261)
                      |.|+++|.|..|  +|++|..+.++++
T Consensus        78 Y~frVRa~~~~~g~ws~wS~~v~v~~P  104 (106)
T d1axib2          78 YEVRVRSKQRNSGNYGEFSEVLYVTLP  104 (106)
T ss_dssp             EEEEEEEEETTSSCCCCCCCCEEECCC
T ss_pred             EEEEEEEEECCCCCCCCCCCCEEEECC
Confidence            999999998665  5888888877765

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=98.91  E-value=6.9e-10  Score=68.07  Aligned_cols=54  Identities=20%  Similarity=0.370  Sum_probs=42.4

Q ss_pred             CCCCeeccCCCCc--e-EEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTSA--R-IILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~~--~-~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||||++|..+...  . .....++|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        40 ~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   96 (97)
T d3dara1          40 LKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDV   96 (97)
T ss_dssp             EETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEE-EEEEEEEE
Confidence            5899999754321  2 22334699999999999999999999999986 66788877

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.90  E-value=6.9e-10  Score=67.67  Aligned_cols=54  Identities=22%  Similarity=0.350  Sum_probs=42.2

Q ss_pred             CCCCeeccCCCCceEE-EECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549          1 MAGGIPLAHNTSARII-LSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR   54 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~   54 (261)
                      +|||++|..+...... ..+++|.|.+++.+|+|.|+|.|.|..|...+..+.|.
T Consensus        38 ~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~v~l~   92 (94)
T d1biha1          38 KKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFR   92 (94)
T ss_dssp             EESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCCCEEEEEEEEEE
Confidence            5899999755543333 34579999999999999999999999998656655554

>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=9e-09  Score=61.84  Aligned_cols=81  Identities=14%  Similarity=0.153  Sum_probs=61.1

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      .+|.++.+.......+.|+|.++  .+.-..|.+.|+..+...... .........+.|.+  |.++..|.|++.|.|..
T Consensus         2 daP~nl~v~~~~~~s~~l~W~~p--~~~i~~Y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~p~t~Y~~~V~a~n~~   77 (89)
T d1fnha3           2 DAPSNLRFLATTPNSLLVSWQPP--RARITGYIIKYEKPGSPPREVVPRPRPGVTEATITG--LEPGTEYTIYVIALKNN   77 (89)
T ss_dssp             CCCEEEEEEEEETTEEEEEEECC--SSCCSEEEEEEECTTSCCEECTTCCCTTCCEEEEES--CCTTCEEEEEEEEESSS
T ss_pred             ccCcCCEEEEecCCEEEEEEeCC--CcCCceEEEEEeeccCCccEEEEEcCCCccEEEEEe--eeCCCEEEEEEEEEcCC
Confidence            36788888888899999999973  333456999888755443222 22334557899999  99999999999999999


Q ss_pred             CcCCce
Q psy11549        237 GRSLPV  242 (261)
Q Consensus       237 G~~~~s  242 (261)
                      |.|++.
T Consensus        78 g~S~p~   83 (89)
T d1fnha3          78 QKSEPL   83 (89)
T ss_dssp             CEEEEE
T ss_pred             CEeCCE
Confidence            976543

>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Down syndrome cell adhesion molecule-like protein 1, DSCAML1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.7e-09  Score=65.76  Aligned_cols=93  Identities=14%  Similarity=0.129  Sum_probs=69.1

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecCCC--CCCC-eEEEEEEEeCCcccee-E----EEecCCCCcEEEcCCCCCCccEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPGYD--GGLP-QTFTLELYSASDLNLL-V----NLTNLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~~~--~~~p-~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      |+.+|.++.+.....+.+.|.|.++..  .+.+ ..|.+.|+........ +    .........+.|.+  |.++..|.
T Consensus         8 P~~pP~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~   85 (109)
T d1va9a1           8 PDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDN--LKKFAQYG   85 (109)
T ss_dssp             CSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEEEES--CCSSCCEE
T ss_pred             CCCCCcCcEEEEecCCEEEEEEcCCCCCCCCCcEEEEEEEEeeccccccceeeeeEEecCCCeeEEEECC--CCcceEEE
Confidence            445888999988899999999996532  2334 4588888765444211 1    11123446889999  99999999


Q ss_pred             EEEEEEcCCCcCCceeeeeeeec
Q psy11549        228 VVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       228 ~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      |++.|.|..|.|++|.++.+++.
T Consensus        86 ~~V~a~n~~G~g~~S~~v~~~T~  108 (109)
T d1va9a1          86 VVVQAFNRAGTGPSSSEINATTL  108 (109)
T ss_dssp             EEEEEEETTEECCCCCCEECCCC
T ss_pred             EEEEEEcCCcCCCCCCCEEEEcC
Confidence            99999999999999998887653

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.3e-09  Score=65.16  Aligned_cols=74  Identities=15%  Similarity=0.067  Sum_probs=51.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---------cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---------VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      +....|++++|.|... .|.+ .+.|++++......         ....+........+|.|.++..+|+|.|.|.+.+.
T Consensus         5 v~~~~G~sVtl~c~~~-~p~~-~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           5 IYGVVYGNVTFHVPSN-VPLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEETTCCEEECCCCS-SCCS-CEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEECCCEEEEecCC-CCCc-EEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            5677999999999864 3445 79999876421110         01112233444568999999999999999999887


Q ss_pred             CceEE
Q psy11549        140 IGTQV  144 (261)
Q Consensus       140 ~~~~~  144 (261)
                      .+...
T Consensus        83 ~~t~~   87 (93)
T d1ccza1          83 TDTMK   87 (93)
T ss_dssp             CSCEE
T ss_pred             CcEEE
Confidence            65443

>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA0343 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2e-08  Score=64.49  Aligned_cols=96  Identities=11%  Similarity=-0.012  Sum_probs=69.3

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCC--CCCCeE-EEEEEEeCCccc--------eeEEEecCCCCcEEEcCCCCCCc
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYD--GGLPQT-FTLELYSASDLN--------LLVNLTNLDTPAFTLEDLGLDGT  223 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~--~~~p~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~i~~~~l~~~  223 (261)
                      .|+.+|.++.+.......+.|.|.++..  .+.++. |.+.++......        ............+.|.+  |.++
T Consensus        13 ~P~~~P~~v~v~~~~~~si~l~W~~p~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~   90 (125)
T d1uena_          13 LPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPG--LEPF   90 (125)
T ss_dssp             CCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSEEEEES--CCSS
T ss_pred             CCCCCCcccEEEEecCCEEEEEEeCccCCCCCcceeeEEeEEEeecCCccceeecccceEEEeCCCccEEEECC--CCCC
Confidence            4556899999998899999999997432  233333 555554422111        11122344557899999  9999


Q ss_pred             cEEEEEEEEEcCCCcCCceeeeeeeeccc
Q psy11549        224 VLMRVVISGVNAKGRSLPVIWDDFSMSGA  252 (261)
Q Consensus       224 ~~Y~~~~~a~N~~G~~~~s~~~~~~~~~~  252 (261)
                      ..|.|+|.|.|..|.+.+|.++.+++...
T Consensus        91 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~  119 (125)
T d1uena_          91 SHYTLNVRVVNGKGEGPASPDRVFNTPEG  119 (125)
T ss_dssp             CEEEEEEEEEESSCEEEECCCEEEECCCC
T ss_pred             CEEEEEEEEEeCCcccCCCCCEEEECCCC
Confidence            99999999999999999999988887643

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.7e-09  Score=66.57  Aligned_cols=56  Identities=13%  Similarity=0.151  Sum_probs=44.7

Q ss_pred             CCCCeecc--CCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549          1 MAGGIPLA--HNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY   57 (261)
Q Consensus         1 ~~ng~~l~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~   57 (261)
                      ||||.++.  .....++...+++|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..
T Consensus        38 ~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~L~V~~   95 (101)
T d1iray1          38 YKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-RIKISAKFVE   95 (101)
T ss_dssp             ECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEEEEEC
T ss_pred             EECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeE-EEEEEEEEEe
Confidence            47776654  23344566778899999999999999999999999887 5678888863

>d1tdqa3 b.1.2.1 (A:186-271) Tenascin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.88  E-value=2.7e-08  Score=59.22  Aligned_cols=83  Identities=18%  Similarity=0.273  Sum_probs=64.7

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      .+|.++++.......+.|.|.++  .+.-..|.+.|+..+... ...........+.|.+  |.++..|.|++.|.|..|
T Consensus         2 ~~P~nl~v~~~~~~s~~l~W~~p--~~~~~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~~~--L~p~t~Y~v~V~a~~~~~   76 (86)
T d1tdqa3           2 DSPRDLMVTASSETSISLIWTKA--SGPIDHYRITFTPSSGIS-SEVTVPRDRTSYTLTD--LEPGAEYIISITAERGRQ   76 (86)
T ss_dssp             CCCEEEEEEEECSSCEEEEEECC--CSCCSEEEEEEECSSSCC-EEEEEESSCSEEEECC--CCTTCCEEEEEEEEETTE
T ss_pred             ccCCCCEEEEecCCEEEEEEeCC--CCCccceEEEEecccccc-eEEEeCCCccEEEECC--CccccEEEEEEEEEcCCC
Confidence            46788888888999999999973  334456889887655443 2333345668999999  999999999999999999


Q ss_pred             cCCceeee
Q psy11549        238 RSLPVIWD  245 (261)
Q Consensus       238 ~~~~s~~~  245 (261)
                      .|.++...
T Consensus        77 ~s~p~~~~   84 (86)
T d1tdqa3          77 QSLESTVD   84 (86)
T ss_dssp             ECCCEEEE
T ss_pred             EECCEEee
Confidence            98887654

>d1erna2 b.1.2.1 (A:117-221) Erythropoietin (EPO) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Erythropoietin (EPO) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.7e-08  Score=60.58  Aligned_cols=93  Identities=10%  Similarity=-0.029  Sum_probs=63.0

Q ss_pred             CCCCCCCcceEEeec-CCeEEEEeecCCCC-CCC-eEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        155 GKPQPPQNCSVRNET-TSSVHISCTPGYDG-GLP-QTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~-~~~~~l~c~~~~~~-~~p-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .+|.||.++.+.... ...+.|.|.++... +.. ..|.+.|+..+...... .........+.|.+  |.+++.|.|+|
T Consensus         3 Vk~dPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~t~~~i~~--L~p~t~Y~~rV   80 (105)
T d1erna2           3 VLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSAGNGAGSVQRVEILEGRTECVLSN--LRGRTRYTFAV   80 (105)
T ss_dssp             BCCCCCEEEEEEECCC-CCEEEEEECSSSCSCGGGEEEEEEEEEC-CCCEEEEEEECTTCCEEEECS--CCSSCEEEEEE
T ss_pred             cccCCCCCCEEEEecCCCcEEEEeeeccccccceEEEEEEEEecCCCCCceEEEeecCCccEEEEeC--CCCCcEEEEEE
Confidence            367899998887643 45699999965433 222 45999988765543333 33344557899999  99999999999


Q ss_pred             EEEcC--CC---cCCceeeeeeee
Q psy11549        231 SGVNA--KG---RSLPVIWDDFSM  249 (261)
Q Consensus       231 ~a~N~--~G---~~~~s~~~~~~~  249 (261)
                      +|.+.  .|   +|++|..+.+.+
T Consensus        81 Rar~~~~~~~G~WSeWS~~v~~~t  104 (105)
T d1erna2          81 RARMAEPSFGGFWSAWSEPVSLLT  104 (105)
T ss_dssp             EEEECSSSCCBCCCCCCCCEEEEC
T ss_pred             EEEECCCCCCCCCCCCCCCEEeeC
Confidence            99854  33   356666666554

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=1.4e-09  Score=65.53  Aligned_cols=52  Identities=23%  Similarity=0.224  Sum_probs=41.5

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +|||..+..+   .....+++|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        38 ~k~~~~~~~~---~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~   89 (89)
T d1gl4b_          38 TRLHNGKLPS---RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMD-QGTATLHVQ   89 (89)
T ss_dssp             EEGGGBCCCT---TEEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             ecCCceeecc---ccEeeceEEEEecCCcccCEEEEEEEEECCCEE-EEEEEEEEC
Confidence            3677776432   345568899999999999999999999999986 667788773

>d1bqua2 b.1.2.1 (A:100-214) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7.7e-09  Score=65.44  Aligned_cols=95  Identities=19%  Similarity=0.149  Sum_probs=66.0

Q ss_pred             CCCCCCcceEEe--ecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeE---EEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        156 KPQPPQNCSVRN--ETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLV---NLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       156 ~p~~p~~~~v~~--~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      .|.+|.++.+..  .....+.|.|.++.+.+.+ ..|.+.|+.........   .........+.|.+  |.++..|.|+
T Consensus         4 kP~pP~~~~v~~~~~~~~si~v~W~~p~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~~~t~Y~~~   81 (115)
T d1bqua2           4 KPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQD--LKPFTEYVFR   81 (115)
T ss_dssp             ECCCCEEEEEECC--CCSCEEEEEECCGGGGTSCEEEEEEEEETTCSSCEECCGGGGCSCCSEEEECS--CCSSEEEEEE
T ss_pred             ECCCCCCCEEEEeccCCCEEEEEEeeccccccceeeeeeeeeeeeeeeeeccccccccccccEEeeCC--CccCcEEEEE
Confidence            467887777764  4577899999976544444 56999888755543221   11234457899999  9999999999


Q ss_pred             EEEEcCCCcCCcee---eeeeeeccc
Q psy11549        230 ISGVNAKGRSLPVI---WDDFSMSGA  252 (261)
Q Consensus       230 ~~a~N~~G~~~~s~---~~~~~~~~~  252 (261)
                      |.|.|..|.+.+|.   ...++++..
T Consensus        82 V~a~~~~G~g~~S~~S~~~~~~T~~~  107 (115)
T d1bqua2          82 IRCMKEDGKGYWSDWSEEASGITYED  107 (115)
T ss_dssp             EEEEETTSCSCCCCCCCCEEEEECCC
T ss_pred             EEEEeCCCccCCcCCcCCEEEECCCC
Confidence            99999999876554   445555433

>d1wj3a_ b.1.2.1 (A:) Contactin 3 (KIAA1496) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Contactin 3 (KIAA1496)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.3e-08  Score=64.54  Aligned_cols=87  Identities=16%  Similarity=0.109  Sum_probs=60.8

Q ss_pred             CCCC-CCCcceEEeecCCeEEEEeecC--CCCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEE
Q psy11549        155 GKPQ-PPQNCSVRNETTSSVHISCTPG--YDGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVI  230 (261)
Q Consensus       155 ~~p~-~p~~~~v~~~~~~~~~l~c~~~--~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~  230 (261)
                      .+|. +|..+ +.......+.|.|.+.  ...+.++ .|.++|+..+...  +.... ....+.+.+  |.++..|.|+|
T Consensus        16 ~~P~~pp~~~-~~~~~~~~i~v~W~~~~~~~~~g~i~~Y~v~y~~~~~~~--~~~~~-~~~~~~~~~--L~p~t~Y~~~V   89 (117)
T d1wj3a_          16 TPPSQPPGNV-VWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNN--VQVLN-TNKTSAELV--LPIKEDYIIEV   89 (117)
T ss_dssp             CCCCCCCCSC-BCCEETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSS--CEEEE-ESSSEEEEE--CCCSSCEEEEE
T ss_pred             CCcCCCCcce-EEeecCCEEEEEEeecccccCCCceeEEEEEEEecCCCc--eeeee-ceeeEEEee--ccCCcEEEEEE
Confidence            4454 44443 3335688999999853  2333454 5999988766543  22222 235677888  99999999999


Q ss_pred             EEEcCCCcCCceeeeee
Q psy11549        231 SGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       231 ~a~N~~G~~~~s~~~~~  247 (261)
                      .|.|..|.+.+|..+.+
T Consensus        90 ~A~n~~G~G~~S~~v~v  106 (117)
T d1wj3a_          90 KATTDGGDGTSSEQIRI  106 (117)
T ss_dssp             EEEESSCCCCBCCCEEE
T ss_pred             EEEcCCccCCCCCCEEE
Confidence            99999999999987765

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=4.9e-09  Score=64.09  Aligned_cols=84  Identities=13%  Similarity=0.153  Sum_probs=55.4

Q ss_pred             EEeeCCCcEEEEEEEe-eCCCCceeEEEEcCCcccc-c------cCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         69 VGASRSESVDIHCAVE-ADPPARSFKWKFNNSGETL-D------VGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~-~------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +....|++++|.|... .......|.|++++..... .      ....+..... ..+|.|.++..+|+|.|+|.+.+..
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~-ngSL~I~nl~~~DsG~Y~c~v~~~~   83 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILA-NGDLKIKNLTRDDSGTYNVTVYSTN   83 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECT-TSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECC-CccEEEeCCCHHHCEEEEEEEEeCC
Confidence            5566899999999643 3333337999987642110 0      0111222222 2469999999999999999999988


Q ss_pred             ceEEeeEEEEEEe
Q psy11549        141 GTQVTPCLYQVVL  153 (261)
Q Consensus       141 ~~~~~~~~~~v~~  153 (261)
                      |.......+.+.|
T Consensus        84 g~~~~~~~~~L~V   96 (98)
T d1hnga1          84 GTRILNKALDLRI   96 (98)
T ss_dssp             CCEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            8776555666655

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=3.6e-09  Score=64.78  Aligned_cols=54  Identities=19%  Similarity=0.386  Sum_probs=40.8

Q ss_pred             CCeeccCCCCceEEEE--C--CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          3 GGIPLAHNTSARIILS--N--QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~--~--~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||..+..+..+.....  +  .+|.|.+++.+|+|.|+|.|.|..|...+.++.|.|.
T Consensus        39 ~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          39 NGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             TSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            6777765544444332  2  4799999999999999999999999765667777774

>d1wk0a_ b.1.2.1 (A:) Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin type-III domain containing protein 3a, FNDC3A (KIAA0970)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.1e-08  Score=66.79  Aligned_cols=95  Identities=9%  Similarity=0.018  Sum_probs=66.5

Q ss_pred             CCCCCcceEEeecCCeEEEEeecCCC-CC---------CCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEE
Q psy11549        157 PQPPQNCSVRNETTSSVHISCTPGYD-GG---------LPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       157 p~~p~~~~v~~~~~~~~~l~c~~~~~-~~---------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      |..+....+..+....+.|.|.++.. .+         ....|.+.+...................+.|.+  |.+++.|
T Consensus        18 ~~~~~~P~V~~v~~~sv~l~W~~P~~~~~~~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~--L~P~t~Y   95 (137)
T d1wk0a_          18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLND--LKPAMDY   95 (137)
T ss_dssp             TTCCCCCEEESCCSSCEEEECCCCCCCSTTSSCSSCSCSCCEEEEEECSSCTTSCCEEEEEESCSEEEECS--CCTTCEE
T ss_pred             CCCCCCCEEEEeEcCEEEEEEeCcCcCCCceeeccccceEEeeEEEEeeCCCCccEEEEEecCccEEEECC--CCCCcEE
Confidence            33344446777789999999997532 22         123466666554333212233334567899999  9999999


Q ss_pred             EEEEEEEcCCCcCCceeeeeeeecccc
Q psy11549        227 RVVISGVNAKGRSLPVIWDDFSMSGAH  253 (261)
Q Consensus       227 ~~~~~a~N~~G~~~~s~~~~~~~~~~~  253 (261)
                      +|+|.|.|..|.+.+|....+++....
T Consensus        96 ~f~V~A~n~~G~g~~S~~~~~~T~~~~  122 (137)
T d1wk0a_          96 HAKVQAEYNSIKGTPSEAEIFTTLSCE  122 (137)
T ss_dssp             CEEEEEEETTEECCCCCCCCEECCCSS
T ss_pred             EEEEEEEcCCcccCCCCCEEEECCCCC
Confidence            999999999999999998888765443

>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4e-08  Score=59.15  Aligned_cols=79  Identities=14%  Similarity=0.085  Sum_probs=60.6

Q ss_pred             CcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        161 QNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       161 ~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      +++++.......+.|.|.++  .+....|.+.|...+...... .........+.|.+  |.++..|.|++.|.|..|.+
T Consensus         1 rnl~v~~~t~~sv~l~W~~p--~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~t~~~l~~--L~p~t~Y~~~V~a~~~~g~s   76 (91)
T d1fnaa_           1 RDLEVVAATPTSLLISWDAP--AVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISG--LKPGVDYTITVYAVTGRGDS   76 (91)
T ss_dssp             CCCEEEEECSSCEEEECCCC--SSCCSEEEEEEEETTCCSCCEEEEEETTCCEEEECS--CCTTCEEEEEEEEECTTCCS
T ss_pred             CCCEEEEeCCCEEEEEEEcc--ceEecEEEEEEEcCCCCceeEEEEeCCCccEEEeCC--CCCCCEEEEEEEEEeCCccC
Confidence            46778888899999999973  333456999887755443222 33445668999999  99999999999999999988


Q ss_pred             Ccee
Q psy11549        240 LPVI  243 (261)
Q Consensus       240 ~~s~  243 (261)
                      .++.
T Consensus        77 ~~~s   80 (91)
T d1fnaa_          77 PASS   80 (91)
T ss_dssp             SCSC
T ss_pred             CCcC
Confidence            7654

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=8.6e-09  Score=63.16  Aligned_cols=81  Identities=11%  Similarity=0.033  Sum_probs=51.4

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCceEEeeEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIGTQVTPCLY  149 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~  149 (261)
                      .+..|++++|.|.....  ...+.|++++....................|.|.++...|+|.|.|.+.+.......+..+
T Consensus        17 ~V~~G~~VTL~C~~~~~--~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl   94 (99)
T d1ucta1          17 VIPLDGSVKIQCQAIRE--AYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTL   94 (99)
T ss_dssp             EEETTCCEEEEECCCTT--CSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCE
T ss_pred             ceeCCCeEEEEEcCCCC--CcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCcccCCCCCE
Confidence            36789999999986533  3379999876432222211111223344579999999999999999998876543333344


Q ss_pred             EEE
Q psy11549        150 QVV  152 (261)
Q Consensus       150 ~v~  152 (261)
                      .+.
T Consensus        95 ~L~   97 (99)
T d1ucta1          95 ELV   97 (99)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Fibronectin, different Fn3 modules
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=2.9e-08  Score=60.12  Aligned_cols=85  Identities=14%  Similarity=0.212  Sum_probs=60.6

Q ss_pred             CCCCCCcceEEeecC-CeEEEEeecCCCCCCC-eEEEEEEEeCCccc--eeEEEecCCCCcEEEcCCCCCCccEEEEEEE
Q psy11549        156 KPQPPQNCSVRNETT-SSVHISCTPGYDGGLP-QTFTLELYSASDLN--LLVNLTNLDTPAFTLEDLGLDGTVLMRVVIS  231 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~-~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~  231 (261)
                      |+.+|.++.+..... +.+.|+|.++  .+.. ..|.+.|+......  ............++|.+  |.++..|+|++.
T Consensus         1 P~~PP~~l~v~~~~~ts~i~v~W~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~v~V~   76 (94)
T d1fnfa1           1 PLSPPTNLHLEANPDTGVLTVSWERS--TTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDN--LSPGLEYNVSVY   76 (94)
T ss_dssp             CCCCCEEEEEEECSSSSCEEEEEECC--SCSSCCEEEEEEEETTTCSSCCEEEEECTTCCEEECCC--CCTTSCEEEEEE
T ss_pred             CCCcCcCcEEEEecCCCEEEEEeeCC--CCCCeeEEEEEEEEecccCceEEEEEeCCCccEEEECC--CCCCCEEEEEEE
Confidence            456888888887654 4589999973  2322 45988887644332  12233344568899999  999999999999


Q ss_pred             EEcCCCcCCceee
Q psy11549        232 GVNAKGRSLPVIW  244 (261)
Q Consensus       232 a~N~~G~~~~s~~  244 (261)
                      |.|..|.|.+...
T Consensus        77 a~~~~g~s~p~s~   89 (94)
T d1fnfa1          77 TVKDDKESVPISD   89 (94)
T ss_dssp             EEETTEECCCEEE
T ss_pred             EEcCCCEeCCEEE
Confidence            9999998765443

>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Tenascin-X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.2e-08  Score=59.22  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             CCCCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc--------eeE-EEecCCCCcEEEcCCCCCCccE
Q psy11549        155 GKPQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN--------LLV-NLTNLDTPAFTLEDLGLDGTVL  225 (261)
Q Consensus       155 ~~p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~i~~~~l~~~~~  225 (261)
                      ..|.+|.++.+.....+.+.|.|.+  ..+.-..|.+.++......        ... .........++|.+  |+++..
T Consensus         2 g~Pp~~~~l~v~~~t~~sv~v~W~p--p~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--L~p~t~   77 (101)
T d2cuia1           2 GSRPRLSQLSVTDVTTSSLRLNWEA--PPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRD--LRSGTL   77 (101)
T ss_dssp             CCCCCCCCCEEESCCSSCEEEECCC--CTTSCSEEEEEEECCCCSSSCCCSSCCCCEEEEEETTCCEEEECS--CCTTCE
T ss_pred             CCccCCCCcEEEEECCCEEEEEEEe--ccccccceEEEEEecCCCceeeccCCcceeEeecccceeEEEeCC--CCcCCE
Confidence            4577888899999999999999997  3333355888877643221        011 22334567899999  999999


Q ss_pred             EEEEEEEEcCCCcCCceeeee
Q psy11549        226 MRVVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       226 Y~~~~~a~N~~G~~~~s~~~~  246 (261)
                      |+|+|.|.|..|.++++....
T Consensus        78 Y~~~V~a~~~~g~g~~~~~~~   98 (101)
T d2cuia1          78 YSLTLYGLRGPHKADSIQGTA   98 (101)
T ss_dssp             EEEEEEEECSSSEEEEEEEEE
T ss_pred             EEEEEEEEeCCcEeCCeEEEe
Confidence            999999999999988765543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=3e-09  Score=64.37  Aligned_cols=54  Identities=22%  Similarity=0.332  Sum_probs=40.2

Q ss_pred             CCCCeeccCCCC-ceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549          1 MAGGIPLAHNTS-ARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      ||||+++..... +.....+++|.|.+++.+|+|.|+|.|.|..+.. .....|.|
T Consensus        36 ~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~-~~~~~i~V   90 (92)
T d1epfa2          36 KHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGE-INFKDIQV   90 (92)
T ss_dssp             EETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTE-EEEEEEEE
T ss_pred             EEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECcCCE-EEEEEEEE
Confidence            578898875543 4555566799999999999999999999976554 33344444

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=6.9e-09  Score=62.48  Aligned_cols=76  Identities=11%  Similarity=0.065  Sum_probs=53.4

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      ..|+.+.|.|.+  .+.+++.+.|+ +..................|.|.+++.+|.|.|  +|.|.|..|..+.+..+.+
T Consensus        14 ~~G~~v~l~C~~--~g~p~p~i~W~-~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y--~C~a~N~~g~~~~~~~v~V   88 (90)
T d1vcaa2          14 QIGDSVSLTCST--TGCESPFFSWR-TQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSY--LCTATCESRKLEKGIQVEI   88 (90)
T ss_dssp             ETTSCEEEEEEE--ESCSSCEEEEE-ETTCCCCSSEEEEETTEEEEEESSCCGGGCSEE--EEEEEETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEec--cCCCCceEEEE-ecCccceeeeeeeecCCcEEEEecccccccceE--EEEEEeCCCEEEEEEEEEE
Confidence            469999999998  44444455554 433332212223334457899999999999999  9999999998877777666


Q ss_pred             e
Q psy11549        248 S  248 (261)
Q Consensus       248 ~  248 (261)
                      +
T Consensus        89 ~   89 (90)
T d1vcaa2          89 Y   89 (90)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.8e-08  Score=63.64  Aligned_cols=84  Identities=17%  Similarity=0.255  Sum_probs=54.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCC---CceeEEEEcCCccccc------------------cCCceEEe-----CCceeEEEEe
Q psy11549         69 VGASRSESVDIHCAVEADPP---ARSFKWKFNNSGETLD------------------VGSERFSS-----GSRGSMLRYT  122 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~------------------~~~~~~~~-----~~~~~~l~i~  122 (261)
                      +.+.+|+++.|.|.+...+.   ...+.|++........                  ....+...     .....+|.|.
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~   93 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVT   93 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEEC
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEEc
Confidence            67789999999999875543   3368898642211100                  00011111     1224579999


Q ss_pred             cCCCCcCeEEEEEEEcCCceEEeeEEEEEE
Q psy11549        123 PVTELDYGTLSCAAQNAIGTQVTPCLYQVV  152 (261)
Q Consensus       123 ~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~  152 (261)
                      ++..+|+|.|.|.+.+..+.......+.|.
T Consensus        94 ~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          94 NLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            999999999999999887766664444443

>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Ciliary neurotrophic factor receptor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=4.9e-08  Score=60.92  Aligned_cols=90  Identities=14%  Similarity=0.058  Sum_probs=61.7

Q ss_pred             CCCCCCCcceEEee--cCCeEEEEeecCCCCCCC----eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEE
Q psy11549        155 GKPQPPQNCSVRNE--TTSSVHISCTPGYDGGLP----QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       155 ~~p~~p~~~~v~~~--~~~~~~l~c~~~~~~~~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      ..|.+|.++.+...  ....+.|.|.++...+.+    ..|.+.++....... ..........++|.+  |.+++.|.|
T Consensus         6 VkP~PP~~l~v~~~~~~~~~l~l~W~~P~~~~~~~~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~i~~--L~~~t~Y~~   82 (109)
T d1uc6a_           6 VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQW-QHVELSNGTAHTITD--AYAGKEYII   82 (109)
T ss_dssp             CCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCTTTTTBCEEEEEEESSSCCC-CCEEESSCSEEEETT--CCSSSCEEE
T ss_pred             EECCCCCCCEEEEEecCCCEEEEEEeCCcccCCCCeeEEEEEEEEeecCCCce-EEeccCCceeEEeCC--CCCCCEEEE
Confidence            36889988888654  467899999976432222    347777776554421 133344567899999  999999999


Q ss_pred             EEEEEcCCC--cCCceeeeee
Q psy11549        229 VISGVNAKG--RSLPVIWDDF  247 (261)
Q Consensus       229 ~~~a~N~~G--~~~~s~~~~~  247 (261)
                      +|+|.|..+  +|++|..+..
T Consensus        83 rVrA~~~~~g~wS~WS~~~~~  103 (109)
T d1uc6a_          83 QVAAKDNEIGTWSDWSVAAHA  103 (109)
T ss_dssp             EEECCBSSSCCCCCCCEEEEE
T ss_pred             EEEEEECCCCCcCCCCCCEEe
Confidence            999988643  3555555554

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.77  E-value=2e-09  Score=65.92  Aligned_cols=54  Identities=28%  Similarity=0.474  Sum_probs=42.0

Q ss_pred             CCCCeeccCCCCceEEEEC-CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSN-QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLR   54 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~-~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~   54 (261)
                      +|||++|..+........+ ..|.|..++.+|+|.|+|.|.|..|...|..+.|.
T Consensus        42 ~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          42 KMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             EEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            5899999765554555444 46777889999999999999999998766666664

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.8e-08  Score=60.45  Aligned_cols=76  Identities=9%  Similarity=-0.034  Sum_probs=52.5

Q ss_pred             EeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceee
Q psy11549        166 RNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIW  244 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~  244 (261)
                      ....|+.+.|.|.+  ..+.|. .+.| ++.....  ...........|.|.+++.+|.|.|  +|.|.|..|..+.+..
T Consensus        14 ~~~~G~~~~l~C~~--~~g~p~p~v~W-~~~~~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y--~C~Asn~~g~~~~s~~   86 (90)
T d1gsma1          14 AVALGASRQLTCRL--ACADRGASVQW-RGLDTSL--GAVQSDTGRSVLTVRNASLSAAGTR--VCVGSCGGRTFQHTVQ   86 (90)
T ss_dssp             EEETTCCEEEEEEE--CCSSTTCEEEE-ESSTTTT--CCEEEESSEEEEEECSCCGGGCEEE--EEEEEETTEEEEEEEE
T ss_pred             EEEeCCcEEEEEEe--cCCCCccEEEE-EEeeeee--eeeeccCceeeEEcCccChhhCCcE--EEEEEeCCCcEEEEEE
Confidence            33569999999986  434444 4444 3332222  1122334457899999999999999  9999999998777777


Q ss_pred             eeee
Q psy11549        245 DDFS  248 (261)
Q Consensus       245 ~~~~  248 (261)
                      +.|+
T Consensus        87 l~Vy   90 (90)
T d1gsma1          87 LLVY   90 (90)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            6653

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=6.5e-09  Score=63.11  Aligned_cols=51  Identities=20%  Similarity=0.272  Sum_probs=38.0

Q ss_pred             CCCCeeccCCCCceEEE-ECC--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIIL-SNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~-~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||||++|..++.+..+. .++  +|.|.+++.+|+|.|+|.|.|.     +.++.|.|.
T Consensus        40 ~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~-----~~s~~l~V~   93 (94)
T d1pd6a_          40 LKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGE-----KCSTELFVK   93 (94)
T ss_dssp             EESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEETTE-----EECCEEEEE
T ss_pred             EEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEeeE-----EEEEEEEEE
Confidence            68999997665544443 333  7999999999999999999663     344567764

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.70  E-value=1.1e-08  Score=62.44  Aligned_cols=46  Identities=30%  Similarity=0.521  Sum_probs=38.3

Q ss_pred             CCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEE
Q psy11549         11 TSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVK   56 (261)
Q Consensus        11 ~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~   56 (261)
                      .++.....+++|+|.+++.+|+|.|+|.+.+..|.. .+.++.|.|.
T Consensus        51 ~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          51 SGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             STTEEECTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             CCeEEECCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence            445666778899999999999999999999998875 3567788775

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.4e-08  Score=59.78  Aligned_cols=67  Identities=15%  Similarity=0.146  Sum_probs=46.1

Q ss_pred             eeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      +..|++|+|.|.....  ...+.|++.+.......  ......+..+.|.|.++...|+|.|+|...+...
T Consensus        15 V~~G~~VTL~C~~~~~--~~~f~L~k~g~~~~~~~--~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1          15 VPKEKQVTICCQGNYG--AVEYQLHFEGSLFAVDR--PKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             EETTCCEEEEEECCTT--CCEEEEEETTEEEEEEC--CSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ccCCCcEEEEEecCCC--ccEEEEEECCCCcceeE--EccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            6699999999986533  33788888764222111  1111133345799999999999999999876544

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.69  E-value=1.3e-08  Score=61.30  Aligned_cols=75  Identities=13%  Similarity=-0.002  Sum_probs=52.0

Q ss_pred             EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeee
Q psy11549        166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWD  245 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~  245 (261)
                      ....|+.++|.|.+  . +.|...+.|++..+.....   .......|.|.+++..|.|.|  +|.|.|..|....+..+
T Consensus        16 ~~~~G~~v~l~C~~--~-g~P~p~i~W~k~~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~~~~~~l   87 (91)
T d1cs6a3          16 YALTGQMVTLECFA--F-GNPVPQIKWRKLDGSQTSK---WLSSEPLLHIQNVDFEDEGTY--ECEAENIKGRDTYQGRI   87 (91)
T ss_dssp             EEETTCCEEEECEE--E-EESCCEEEEEECCSCCSCC---CSBSSSEEEECSCCGGGCEEE--EEEEEETTEEEEEEEEE
T ss_pred             EEecCCcEEEEEEE--E-EccCCEEEEEecccccceE---eeeeeeEEEeCCCCccCCEEE--EEEEEECCCEEEEEEEE
Confidence            33569999999997  3 4454334455544333211   122347899999999999999  99999999987776666


Q ss_pred             eee
Q psy11549        246 DFS  248 (261)
Q Consensus       246 ~~~  248 (261)
                      .|.
T Consensus        88 ~V~   90 (91)
T d1cs6a3          88 IIH   90 (91)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            553

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=7.4e-09  Score=61.48  Aligned_cols=49  Identities=20%  Similarity=0.300  Sum_probs=37.2

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||||.+|....       .+.+.|.....+|+|.|+|.|.|..|...++.+.|.|+
T Consensus        37 ~k~g~~i~~~~-------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~Vk   85 (85)
T d1rhfa2          37 WRGTTKIGGPA-------PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHLQ   85 (85)
T ss_dssp             EETTEECSCSE-------ESSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EECCEECCCCC-------CcceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEEC
Confidence            57888885332       23456667777899999999999999876777888773

>d1ujta_ b.1.2.1 (A:) KIAA1568 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: KIAA1568 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.4e-07  Score=58.72  Aligned_cols=82  Identities=11%  Similarity=0.036  Sum_probs=60.9

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc--eeE---EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLN--LLV---NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      .....+.|+|.++...+.-..|.++|+......  ..|   .........+.|.+  |.+++.|+|++.|.|..|.+..|
T Consensus        27 ~s~tsi~v~W~~p~~~~~i~gY~v~y~~~~~~~~~~~~~~~~v~~~~~~s~~i~~--L~p~t~Y~f~V~A~n~~G~G~~S  104 (120)
T d1ujta_          27 LTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVN--LKKGVTYEIKVRPYFNEFQGMDS  104 (120)
T ss_dssp             CBTTEEEEEEEESSCCSSCCEEEEEEEESSSSSTTTCCEEEECCCTTCCEEEEES--CCSSEEEEEEEEEESSSCCCCCC
T ss_pred             eCCCeEEEEecCCCCCCcEEEEEEEeeecccCCCCcceEEEEeccCceeEEEECC--CCCCCEEEEEEEEEeCCcCcCCC
Confidence            458999999997544443345888887643321  122   22334467899999  99999999999999999999999


Q ss_pred             eeeeeeecc
Q psy11549        243 IWDDFSMSG  251 (261)
Q Consensus       243 ~~~~~~~~~  251 (261)
                      ..+.+++..
T Consensus       105 ~~~~~~T~e  113 (120)
T d1ujta_         105 ESKTVRTTE  113 (120)
T ss_dssp             CCEEEEECS
T ss_pred             CCEEEEeCC
Confidence            988877654

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=98.67  E-value=7.7e-09  Score=62.05  Aligned_cols=51  Identities=27%  Similarity=0.378  Sum_probs=38.6

Q ss_pred             CCCCeeccCCCCceEEEECC--eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTSARIILSNQ--SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||||++|..++...+...++  +|.|.+++.+|+|.|+|.|.|..     .++.|.|.
T Consensus        35 ~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~-----~sa~l~V~   87 (89)
T d1tiua_          35 KLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK-----SAANLKVK   87 (89)
T ss_dssp             CSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB-----CCEEEEEE
T ss_pred             EEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE-----EEEEEEEE
Confidence            69999998765544444433  79999999999999999987643     34667775

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=4.9e-09  Score=64.02  Aligned_cols=37  Identities=30%  Similarity=0.473  Sum_probs=33.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ++|.|.++..+|+|.|+|.|.|..|...+..+.|.|+
T Consensus        60 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            4799999999999999999999999876777888874

>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=4.1e-08  Score=60.25  Aligned_cols=88  Identities=11%  Similarity=0.086  Sum_probs=55.5

Q ss_pred             CCCCCCcceEEeecCCeEEEEeecCCCC-CCC-eEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        156 KPQPPQNCSVRNETTSSVHISCTPGYDG-GLP-QTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       156 ~p~~p~~~~v~~~~~~~~~l~c~~~~~~-~~p-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      ++.|| ++.+.. .++.+.|.|.++... +.. ..|.+.|+......... .........++|.+  |.++..|+|+|+|
T Consensus         5 k~~Pp-~l~v~~-~~~s~~l~W~~P~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~l~~--L~p~t~Y~~rVRa   80 (100)
T d2gysa4           5 QMAPP-SLQVTK-DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMALPA--LEPSTRYWARVRV   80 (100)
T ss_dssp             CCCCC-EEEEC----CCCEEEEEC--------CEEEEEEEECSSSCSTTSCEEEEESCSEEECCC--CCSSCCCEEEEEE
T ss_pred             cCCCC-ccEEEE-CCCEEEEEEecCcccCCccceEEEEEEeecccceeceeecccCCceEEEeCC--CCCCCeEEEEEEE
Confidence            44455 566664 467899999976543 333 45999988655442222 22333457899999  9999999999999


Q ss_pred             EcCCC--cCCceeeeee
Q psy11549        233 VNAKG--RSLPVIWDDF  247 (261)
Q Consensus       233 ~N~~G--~~~~s~~~~~  247 (261)
                      .|..|  .+.+|++.+.
T Consensus        81 ~~~~g~~~g~WSeWS~~   97 (100)
T d2gysa4          81 RTSRTGYNGIWSEWSEA   97 (100)
T ss_dssp             EECCTTCCBCCCCCCCC
T ss_pred             EECCCCCCCCccCCCCC
Confidence            98877  3667766543

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.61  E-value=2e-08  Score=61.27  Aligned_cols=84  Identities=12%  Similarity=0.072  Sum_probs=55.3

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--eEE-EecCCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--LVN-LTNLDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      .|.+..+  ..|+.+.|.|.+   .+.|...+.|+++......  ... ........|.|.++...|.|.|  +|.|.|.
T Consensus         7 ~p~~~~v--~~G~~~~l~C~~---~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y--~C~a~N~   79 (97)
T d1koaa1           7 KPYGTEV--GEGQSANFYCRV---IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY--TVRAKNS   79 (97)
T ss_dssp             CCCCCEE--ETTSCEEEEEEE---ECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCE--EEEEEET
T ss_pred             eCCCEEE--eCCCcEEEEEEE---EEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEE--EEEEEEC
Confidence            4555555  459999999997   3445443445554332211  111 1122334689999999999999  9999999


Q ss_pred             CCcCCceeeeeeee
Q psy11549        236 KGRSLPVIWDDFSM  249 (261)
Q Consensus       236 ~G~~~~s~~~~~~~  249 (261)
                      .|....+..+.|..
T Consensus        80 ~G~~~~~~~l~V~~   93 (97)
T d1koaa1          80 YGTKEEIVFLNVTR   93 (97)
T ss_dssp             TEEEEEEECCEEEC
T ss_pred             CCEEEEEEEEEEee
Confidence            99887777777753

>d1fyhb1 b.1.2.1 (B:12-109) Interferon-gamma receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-gamma receptor alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.9e-07  Score=56.92  Aligned_cols=86  Identities=13%  Similarity=0.012  Sum_probs=55.5

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE----EEecCCCCcEEEcCCCCCCccEEEEEEEEEc
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV----NLTNLDTPAFTLEDLGLDGTVLMRVVISGVN  234 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N  234 (261)
                      +|.++++.... ...+|.|.++...+.+. |...+...+.....+    .........+++.+  |.+++.|.|||.|.|
T Consensus         3 ~P~nv~v~s~n-~~~~L~W~pP~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~Y~fRV~A~n   78 (98)
T d1fyhb1           3 TPTNVTIESYN-MNPIVYWEYQIMPQVPV-FTVEVKNYGVKNSEWIDACINISHHYCNISDHV--GDPSNSLWVRVKARV   78 (98)
T ss_dssp             CCEEEEEECBS-SCCEEEEECCCCSSCCE-EEEEEEETTCSSSCCEEEEEEESSSEEECGGGC--CSTTSCEEEEEEEEE
T ss_pred             cCCceEEEEeC-CcEEEEECCCCCCCCCc-eeEEEEEeccccceeEEeeeecccceeeeEecc--cCCCCEEEEEEEEEc
Confidence            67888887654 45579999865555543 444433322221111    12222233445555  999999999999999


Q ss_pred             CCCcCCceeeeeee
Q psy11549        235 AKGRSLPVIWDDFS  248 (261)
Q Consensus       235 ~~G~~~~s~~~~~~  248 (261)
                      ..|.|.++...++.
T Consensus        79 ~~g~S~ws~s~~f~   92 (98)
T d1fyhb1          79 GQKESAYAKSEEFA   92 (98)
T ss_dssp             TTEECCCEECCCBC
T ss_pred             CCcccCCccCCCcE
Confidence            99999999877654

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.1e-09  Score=64.02  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=32.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +|.|.+++.+|+|.|+|.|.|..|...+.++.|.|.
T Consensus        66 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          66 ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEEE
Confidence            599999999999999999999999875677888885

>d3d85d3 b.1.2.1 (D:212-305) The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: The p40 domain of interleukin-12 (IL-12 beta chain), domains 2 and 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.6e-08  Score=57.94  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=56.9

Q ss_pred             CCCCCCcceEEeec-CCeEEEEeecCCCC-----CCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        156 KPQPPQNCSVRNET-TSSVHISCTPGYDG-----GLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       156 ~p~~p~~~~v~~~~-~~~~~l~c~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      +|.||.++.+.... ...+.|+|.++...     .....|.+.|+..+......... ...+   +..  |.++..|.|+
T Consensus         1 KPdPP~nl~v~~~~~~~~l~v~W~~P~~~~~~~~~~~L~Yev~y~~~~~~~~~~~~~-~~~t---~~~--L~p~~~Y~v~   74 (94)
T d3d85d3           1 KPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVF-TDKT---SAT--VICRKNASIS   74 (94)
T ss_dssp             CCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC------CEEE-ESSS---EEE--ECCCSSCEEE
T ss_pred             CCCCCcccEEEEecCCCeEEEEecCCCCcCCCCCeEEEEEEEEEEECCCCccEEecc-ccce---EEE--ecCCCCEEEE
Confidence            48899999987543 45699999976432     23467999888765542111111 1222   234  7788999999


Q ss_pred             EEEEcCCCcCCceeeeeee
Q psy11549        230 ISGVNAKGRSLPVIWDDFS  248 (261)
Q Consensus       230 ~~a~N~~G~~~~s~~~~~~  248 (261)
                      |+|.+..|.|.+|++..+.
T Consensus        75 VRa~~~~~~g~WSeWS~~~   93 (94)
T d3d85d3          75 VRAQDRYYSSSWSEWASVP   93 (94)
T ss_dssp             EEEEESSSCCCCCCCEEEE
T ss_pred             EEEecCCCCCCCccCcCCC
Confidence            9999999999999988764

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=5.2e-08  Score=59.77  Aligned_cols=79  Identities=14%  Similarity=0.141  Sum_probs=53.4

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc----eeE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcC
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN----LLV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRS  239 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~  239 (261)
                      +....|+.+.|.|.+   .+.|..-+.|+++.....    ... .........|.|.+++.+|.|.|  +|.|.|..|..
T Consensus        15 ~t~~~G~~v~l~C~~---~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~G~~   89 (100)
T d1qz1a3          15 ATANLGQSVTLVCDA---DGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY--VCIAENKAGEQ   89 (100)
T ss_dssp             EETTSCCCEEEEEEE---EEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEE--EEEEEETTEEE
T ss_pred             EEEcCCCCEEEEEEE---EEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEE--EEEEEECCCEE
Confidence            444569999999997   344543344444322111    011 22334457899999999999999  99999999988


Q ss_pred             Cceeeeeee
Q psy11549        240 LPVIWDDFS  248 (261)
Q Consensus       240 ~~s~~~~~~  248 (261)
                      ..+..+.|.
T Consensus        90 ~~~~~l~V~   98 (100)
T d1qz1a3          90 DASIHLKVF   98 (100)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEE
Confidence            777766664

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=9.3e-08  Score=61.60  Aligned_cols=35  Identities=20%  Similarity=0.406  Sum_probs=31.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        95 ~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  129 (130)
T d1gxea_          95 IFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKVI  129 (130)
T ss_dssp             EEECSCCCTTTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             EEEECcCChhcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            79999999999999999999999987 677888774

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2.4e-08  Score=59.97  Aligned_cols=51  Identities=16%  Similarity=0.232  Sum_probs=37.7

Q ss_pred             CCCCeeccCCCC-ceEEEECC---eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549          1 MAGGIPLAHNTS-ARIILSNQ---SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus         1 ~~ng~~l~~~~~-~~~~~~~~---~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      ||||+++..+.. +.....++   +|.|.+++.+|+|.|+|.|.|.     +..+.|.|.
T Consensus        34 ~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-----~~~a~l~V~   88 (90)
T d1x44a1          34 FKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG-----QSSAKLSVD   88 (90)
T ss_dssp             EETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE-----EEEEEEEEE
T ss_pred             EEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc-----eEEEEEEEE
Confidence            589999975544 33334332   8999999999999999999663     345677775

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.9e-08  Score=59.92  Aligned_cols=69  Identities=20%  Similarity=0.340  Sum_probs=46.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC-----------CceEEe-----CCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG-----------SERFSS-----GSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-----------~~~~~~-----~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +...+|++++|+|........ .+.|++..........           ..++..     .....+|.|.++..+|+|.|
T Consensus         4 V~~~~G~svtL~C~~s~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSI-QFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCC-CEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCc-eEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            556799999999987765544 7999975432211100           011111     22245799999999999999


Q ss_pred             EEEEEc
Q psy11549        133 SCAAQN  138 (261)
Q Consensus       133 ~C~~~~  138 (261)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999975

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=3.3e-07  Score=58.14  Aligned_cols=69  Identities=23%  Similarity=0.388  Sum_probs=46.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---------cC------------CceEE---eCCceeEEEEecC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---------VG------------SERFS---SGSRGSMLRYTPV  124 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~------------~~~~~---~~~~~~~l~i~~~  124 (261)
                      +.+..|++++|.|.+...... .+.|++-..+....         ..            ..++.   ..+....|+|.++
T Consensus        11 ~~~~~G~~vtL~C~~~~~~~~-~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~L~I~~~   89 (122)
T d1nezg_          11 MDAELGQKVDLVCEVLGSVSQ-GCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNKYVLTLNKF   89 (122)
T ss_dssp             EEECTTCCEEEEEEEESCCSS-CEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTEEEEEESSC
T ss_pred             EEECCCCCEEEEEEEcCccCC-CEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCEeEEEEccc
Confidence            668899999999998876655 69998732111100         00            01111   2233457999999


Q ss_pred             CCCcCeEEEEEEEc
Q psy11549        125 TELDYGTLSCAAQN  138 (261)
Q Consensus       125 ~~~d~g~y~C~~~~  138 (261)
                      ..+|+|.|.|.+..
T Consensus        90 ~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          90 SKENEGYYFCSVIS  103 (122)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccCCCEEEEeeEeC
Confidence            99999999998764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.55  E-value=1.1e-07  Score=58.83  Aligned_cols=76  Identities=8%  Similarity=-0.037  Sum_probs=50.4

Q ss_pred             EeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce--eE-EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549        166 RNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL--LV-NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       166 ~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      ....|+.+.|.|.+  ..+.|..-+.|+++......  .. .........|.|.+++..|.|.|  +|.|.|..|....+
T Consensus        15 ~v~eG~~~~l~C~~--~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~N~~g~~~~~   90 (105)
T d1cs6a2          15 KITEGWGVMFTCSP--PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNY--SCFATSHIDFITKS   90 (105)
T ss_dssp             EEETTSCEEECCCC--CSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEE--EEEEEEEETTEEEE
T ss_pred             EEeCCCeEEEEEEc--cCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEE--EEEEEECCCCEEEE
Confidence            33569999999996  34555433445555432211  11 22333456899999999999999  99999999976655


Q ss_pred             eee
Q psy11549        243 IWD  245 (261)
Q Consensus       243 ~~~  245 (261)
                      .+.
T Consensus        91 v~~   93 (105)
T d1cs6a2          91 VFS   93 (105)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            443

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3e-07  Score=56.30  Aligned_cols=77  Identities=12%  Similarity=0.091  Sum_probs=49.3

Q ss_pred             eecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc--------eeE-EEecCCCCcEEEcCCCC-CCccEEEEEEEEEcCC
Q psy11549        167 NETTSSVHISCTPGYDGGLPQTFTLELYSASDLN--------LLV-NLTNLDTPAFTLEDLGL-DGTVLMRVVISGVNAK  236 (261)
Q Consensus       167 ~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~i~~~~l-~~~~~Y~~~~~a~N~~  236 (261)
                      ...|+.+.|.|.+  .+..++.-..|++......        ..+ .........|.|.++.+ .|+|.|  +|.|.|.+
T Consensus        14 v~~G~~v~l~C~v--~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y--~C~A~N~~   89 (101)
T d3b5ha1          14 INEGETAMLVCKS--ESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY--RCNGTSSK   89 (101)
T ss_dssp             ECTTSCEEEEEEC--CCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE--EEEEEETT
T ss_pred             ECcCCeEEEEEEE--EecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEEE--EEEEEECC
Confidence            3569999999997  4433332233444322111        112 22233446789999875 589999  99999999


Q ss_pred             CcCCceeeeee
Q psy11549        237 GRSLPVIWDDF  247 (261)
Q Consensus       237 G~~~~s~~~~~  247 (261)
                      |....+..+.|
T Consensus        90 G~~~~~~~L~V  100 (101)
T d3b5ha1          90 GSDQAIITLRV  100 (101)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CEEEEEEEEEE
Confidence            98877766655

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.54  E-value=2.4e-07  Score=58.64  Aligned_cols=73  Identities=21%  Similarity=0.387  Sum_probs=45.9

Q ss_pred             EEeeCCCcEEEEEEEeeCC---CCceeEEEEcCCccc--cc---------------cCCceEEe----CCceeEEEEecC
Q psy11549         69 VGASRSESVDIHCAVEADP---PARSFKWKFNNSGET--LD---------------VGSERFSS----GSRGSMLRYTPV  124 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~~~--~~---------------~~~~~~~~----~~~~~~l~i~~~  124 (261)
                      +.+..|++++|.|......   ....+.|++...+..  ..               ....++..    .....+|.|.++
T Consensus         9 v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (119)
T d1neua_           9 VYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHNL   88 (119)
T ss_dssp             EEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECSC
T ss_pred             EEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECCC
Confidence            5678999999999876432   233799986332110  00               00112222    223457999999


Q ss_pred             CCCcCeEEEEEEEcCCc
Q psy11549        125 TELDYGTLSCAAQNAIG  141 (261)
Q Consensus       125 ~~~d~g~y~C~~~~~~~  141 (261)
                      ..+|+|.|.|.+.+..+
T Consensus        89 ~~~DsG~Y~C~v~~~~~  105 (119)
T d1neua_          89 DYSDNGTFTCDVKNPPD  105 (119)
T ss_dssp             CGGGCEEEEEEEEC---
T ss_pred             ChHHCEEEEEEEEECCC
Confidence            99999999999987543

>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Rim binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=9.7e-09  Score=65.10  Aligned_cols=95  Identities=19%  Similarity=0.194  Sum_probs=61.1

Q ss_pred             CCCCCCCCcceEEe-ecCCeEEEEeecCCCC---CCCeEEEEEEEeCCccceeEEEe--cCCCCcEEEcCCCCCCccEEE
Q psy11549        154 AGKPQPPQNCSVRN-ETTSSVHISCTPGYDG---GLPQTFTLELYSASDLNLLVNLT--NLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       154 ~~~p~~p~~~~v~~-~~~~~~~l~c~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      ..+|.+|.++.+.. .....+.|+|.++...   +....+++.|+........+...  ......+.|.+  |+++..|.
T Consensus         8 ~~pp~pP~~v~v~~~~s~~si~vsW~PP~~~~~~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~~--L~~~t~Y~   85 (117)
T d2cspa1           8 AGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKGQRVAEVIFPTADSTAVELVR--LRSLEAKG   85 (117)
T ss_dssp             CCCCCCCEEEEECCCSSTTEEEEEEECCCCCTTSCSSSSCEEEEEEESSSSEEEEECCTTCSEEEEESHH--HHHHTCSC
T ss_pred             CCCCCCCCccEEEEecCCCEEEEEEcCCCccccCcccccceEEEEEEeecccceeeeeeccceeeeeccC--CCCCcEEE
Confidence            45778888888754 3456899999975321   11112333333211221122222  22234677888  99999999


Q ss_pred             EEEEEEcCCCcCCceeeeeeeec
Q psy11549        228 VVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       228 ~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      |+|+|.|..|.|..|..+.+.+.
T Consensus        86 v~V~A~n~~G~s~~S~~v~i~t~  108 (117)
T d2cspa1          86 VTVRTLSAQGESVDSAVAAVPPE  108 (117)
T ss_dssp             BEEEEEESSCCCCCCSCBCCCHH
T ss_pred             EEEEEEcCCCcCCCCCCEEeeCC
Confidence            99999999999999998877654

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=7.4e-08  Score=56.95  Aligned_cols=69  Identities=7%  Similarity=-0.045  Sum_probs=49.4

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeeeee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      ..|+.++|.|.+  .+..++.+.|. +.....       ......+.|.++..+|.|.|  +|.|.|..|.......+.|
T Consensus        12 ~~G~~~~L~C~~--~g~p~P~i~W~-~~~~~~-------~~~~~~l~i~~v~~~DsG~Y--~C~a~N~~g~~~~~~~v~V   79 (84)
T d2nxyb2          12 LQGQSLTLTLES--PPGSSPSVQCR-SPRGKN-------IQGGKTLSVSQLELQDSGTW--TCTVLQNQKKVEFKIDIVV   79 (84)
T ss_dssp             ETTCCEEEEEEC--CTTCCCEEEEE-CTTCCE-------EEESSEEEESSCCGGGCEEE--EEEEEETTEEEEEEEEECE
T ss_pred             ECCCeEEEEEEe--EcCCchheEEE-eecccc-------eeeeeeeeeeecccccccEE--EEEEEeCCCEEEEEEEEEE
Confidence            359999999997  44444555544 332221       11236789999999999999  9999999998777666655


Q ss_pred             e
Q psy11549        248 S  248 (261)
Q Consensus       248 ~  248 (261)
                      .
T Consensus        80 ~   80 (84)
T d2nxyb2          80 L   80 (84)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=1.2e-07  Score=58.45  Aligned_cols=77  Identities=12%  Similarity=0.072  Sum_probs=51.2

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE----------EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV----------NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      ..|+.++|.|.+  ..+.|.....|+++........          .........+.|.++..+|.|.|  +|.|.|.+|
T Consensus        15 ~~G~~v~l~C~~--~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y--~C~a~N~~G   90 (104)
T d1nbqa2          15 TIGNRAVLTCSE--QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY--SCEARNGYG   90 (104)
T ss_dssp             ETTSCEEECCCC--CSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE--EEEEECSSS
T ss_pred             ecCCcEEEEEEe--ecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE--EEEEEECCC
Confidence            459999999986  4455544344455433221000          11122346789999999999999  999999999


Q ss_pred             cCCceeeeeee
Q psy11549        238 RSLPVIWDDFS  248 (261)
Q Consensus       238 ~~~~s~~~~~~  248 (261)
                      ....|..+.+.
T Consensus        91 ~~~~s~~v~v~  101 (104)
T d1nbqa2          91 TPMTSNAVRME  101 (104)
T ss_dssp             CCEECCCBCCE
T ss_pred             ceEEEEEEEEE
Confidence            88777665543

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.49  E-value=3.6e-07  Score=56.93  Aligned_cols=76  Identities=7%  Similarity=0.022  Sum_probs=49.0

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCcccee--E---------EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL--V---------NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~--~---------~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      ..|+.+.|.|.+  ..+.|..-+.|++........  .         .........+.|.+++.+|.|.|  +|.|.|.+
T Consensus        15 ~~G~~v~L~C~~--~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y--~C~a~N~~   90 (110)
T d1f97a2          15 TIGNRAVLTCSE--HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEY--YCQAQNGY   90 (110)
T ss_dssp             ETTSCEEEEEEC--SCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEE--EEEEECSS
T ss_pred             ecCCeEEEEEEe--ecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEE--EEEEEECC
Confidence            459999999997  344554433444432211000  0         11223446789999999999999  99999999


Q ss_pred             CcCCceeeeee
Q psy11549        237 GRSLPVIWDDF  247 (261)
Q Consensus       237 G~~~~s~~~~~  247 (261)
                      |....+..+.+
T Consensus        91 G~~~~s~~v~l  101 (110)
T d1f97a2          91 GTAMRSEAAHM  101 (110)
T ss_dssp             SCCEECCCEEE
T ss_pred             CcEEEEEEEEE
Confidence            98766555444

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=98.46  E-value=1.1e-07  Score=59.18  Aligned_cols=81  Identities=15%  Similarity=0.168  Sum_probs=52.5

Q ss_pred             CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc-----------eeE-----EEecCCCCcEEEcCCCCCCc
Q psy11549        160 PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLN-----------LLV-----NLTNLDTPAFTLEDLGLDGT  223 (261)
Q Consensus       160 p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~-----------~~~-----~~~~~~~~~~~i~~~~l~~~  223 (261)
                      |++..+  ..|+.+.|.|.+  . +.|...+.|++......           ...     .........|.|.++...|.
T Consensus        12 P~~~tv--~~G~~v~l~C~v--~-g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~   86 (109)
T d2fdbp2          12 PANAST--VVGGDVEFVCKV--Y-SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA   86 (109)
T ss_dssp             SCCEEE--CTTCCEEEEEEE--E-CSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCGGGC
T ss_pred             CCCEEE--ecCCcEEEEEEE--E-EcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCHHHC
Confidence            555544  569999999998  3 45544344444321110           000     01111235789999999999


Q ss_pred             cEEEEEEEEEcCCCcCCceeeeee
Q psy11549        224 VLMRVVISGVNAKGRSLPVIWDDF  247 (261)
Q Consensus       224 ~~Y~~~~~a~N~~G~~~~s~~~~~  247 (261)
                      |.|  +|.|.|..|....+..+.|
T Consensus        87 G~Y--~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          87 GEY--TCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEE--EEEEECSSCEEEEEEEEEE
T ss_pred             eEE--EEEEEECCCEEEEEEEEEE
Confidence            999  9999999998888877765

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.3e-07  Score=59.08  Aligned_cols=36  Identities=17%  Similarity=0.315  Sum_probs=33.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY   57 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~   57 (261)
                      +|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..
T Consensus        73 ~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~  108 (110)
T d2avga1          73 ELHITDAQPAFTGGYRCEVSTKDKFD-CSNFNLTVHE  108 (110)
T ss_dssp             EEEEESCCTTCCEEEEEEEEETTEEE-EEEEEEEEES
T ss_pred             EEEEeccCHHHCcEEEEEEEECCCeE-EEEEEEEEEe
Confidence            69999999999999999999999998 7778998864

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=7.9e-07  Score=54.89  Aligned_cols=70  Identities=16%  Similarity=0.066  Sum_probs=45.8

Q ss_pred             eeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc------------c----CCceEEeCCceeEEEEecCCCCcCeEEEE
Q psy11549         71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLD------------V----GSERFSSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~------------~----~~~~~~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +.+|+++.|.|...... ...+.|++........            .    ...+..... ..+|.|.++..+|+|.|+|
T Consensus        11 v~~G~~V~L~c~~~p~~-~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~-ngSL~I~~v~~~D~G~Y~c   88 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLA-LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS-NGSLLFQMITMKDMGVYTL   88 (107)
T ss_dssp             CCTTCCEEEEEESCCTT-CSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECT-TSCEEECSCCGGGCEEEEE
T ss_pred             ccCCCCEEEEecCCCCC-ceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcc-cccEEEcCCCchhCEEEEE
Confidence            45999999999743332 3379999854321110            0    011223322 3479999999999999999


Q ss_pred             EEEcCCce
Q psy11549        135 AAQNAIGT  142 (261)
Q Consensus       135 ~~~~~~~~  142 (261)
                      .+.+..+.
T Consensus        89 ~v~~~~~~   96 (107)
T d1l6za1          89 DMTDENYR   96 (107)
T ss_dssp             EEEETTEE
T ss_pred             EEEECCCC
Confidence            99876543

>d1y6kr1 b.1.2.1 (R:2-100) Interleukin-10 receptor 1, IL-10R1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interleukin-10 receptor 1, IL-10R1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2.2e-07  Score=56.65  Aligned_cols=84  Identities=11%  Similarity=-0.026  Sum_probs=57.6

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EE-ecCC--CCcEEEcCCCCCCccEEEEEEEEEc
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NL-TNLD--TPAFTLEDLGLDGTVLMRVVISGVN  234 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~-~~~~--~~~~~i~~~~l~~~~~Y~~~~~a~N  234 (261)
                      +|.++++.. .....+|.|.++...+....|.++++..+...... .. ....  ...+.+.+  +..+..|.|||.|.|
T Consensus         6 ~P~nv~~~s-~n~~~~L~W~pp~~~g~~~~Y~Ve~~~~~~~~W~~v~~c~~~t~~~~~~~~~~--l~~~~~Y~fRVrA~n   82 (99)
T d1y6kr1           6 SPPSVWFEA-EFFHHILHWTPIPQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAVTLD--LYHSNGYRARVRAVD   82 (99)
T ss_dssp             CCSCEEEEE-ETTEEEEEECCCTTCCTTCEEEEEEEETTSCCCEEEEEEESSSEEECGGGGTT--GGGSSCEEEEEEEEE
T ss_pred             CCCcceEEE-ECCEEEEEEcCCCCcCCCCEEEEEEEECCCcceEEEEeeccccccceeeeeee--cCCCCEEEEEEEEEc
Confidence            366788764 45578899997666555678999998765552111 11 1111  22344566  888899999999999


Q ss_pred             CCCcCCceeee
Q psy11549        235 AKGRSLPVIWD  245 (261)
Q Consensus       235 ~~G~~~~s~~~  245 (261)
                      ..|.|.++...
T Consensus        83 ~~g~S~Ws~t~   93 (99)
T d1y6kr1          83 GSRHSQWTVTN   93 (99)
T ss_dssp             TTEECCCEECS
T ss_pred             CCCcCCCcccC
Confidence            99999887654

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.9e-07  Score=55.35  Aligned_cols=70  Identities=9%  Similarity=-0.064  Sum_probs=45.1

Q ss_pred             eEEeecCCeEEEEeecCCCCCCC-eEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        164 SVRNETTSSVHISCTPGYDGGLP-QTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       164 ~v~~~~~~~~~l~c~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      .+....|+.+.|.|.+  .+..+ ..+.|+ ++.................|.|.+++.+|+|.|  +|.|.|..+.
T Consensus        15 ~v~~~~G~~v~L~C~~--~g~~~~~~i~W~-k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~n~~~~   85 (93)
T d1n26a1          15 VLTSLPGDSVTLTCPG--VEPEDNATVHWV-LRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNY--SCYRAGRPAG   85 (93)
T ss_dssp             EEEECTTCCEEEECTT--SCTTCCSEEEEE-EECSSSSCCCEEEEEESSEEEECSCCGGGCEEE--EEESSSSCSC
T ss_pred             CEEEeCCCcEEEEEEe--ecCCCCceEEEE-EccccccceeeEEecCCCEEEECCCChhcCEEE--EEEECCcccc
Confidence            3445679999999997  44343 345554 443322211111122346899999999999999  8888887654

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.6e-07  Score=54.20  Aligned_cols=59  Identities=7%  Similarity=0.015  Sum_probs=40.8

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      ..|+.++|.|.+  .++.+..+.||+++....       ......|.|.+++..|.|.|  +|.|.|..+
T Consensus        14 ~~G~~v~L~C~~--~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~v~~~d~G~Y--~C~a~~s~~   72 (82)
T d1f2qa1          14 FKGENVTLTCNG--NNFFEVSSTKWFHNGSLS-------EETNSSLNIVNAKFEDSGEY--KCQHQQVNE   72 (82)
T ss_dssp             ETTCCEEEECCT--TCC----CCEEEETTEEC-------SCCSSEEEECSCCGGGCEEE--EEECTTSSC
T ss_pred             eCCCeEEEEEEE--eeeeeecceeeeeeeeee-------ecccceeEECCCChhhCCcE--EEEecCCCC
Confidence            359999999997  444444456666553222       23447899999999999999  888888654

>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.3e-07  Score=60.56  Aligned_cols=91  Identities=9%  Similarity=-0.000  Sum_probs=65.1

Q ss_pred             CCCCcceEEeecCCeEEEEeecCCC-CCCCe-EEEEEEEeCCccce-----------------------eE-EEecCCCC
Q psy11549        158 QPPQNCSVRNETTSSVHISCTPGYD-GGLPQ-TFTLELYSASDLNL-----------------------LV-NLTNLDTP  211 (261)
Q Consensus       158 ~~p~~~~v~~~~~~~~~l~c~~~~~-~~~p~-~~~~~~~~~~~~~~-----------------------~~-~~~~~~~~  211 (261)
                      ..|.++.+.......+.|+|.++.. ++..+ .|.+.|+.......                       .. ........
T Consensus         3 s~plnl~~~~~sstsv~lsW~pP~~~~~~~i~gY~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T d2dtge3           3 NELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHP   82 (125)
T ss_dssp             CCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSSSCC
T ss_pred             CCCEEEEEEEecCCEEEEEEeCCCccCCCcEEEEEEEEEECCCCceEEEeeccccCCcccceecccCcceeeeecCCccC
Confidence            4677888888899999999997643 33444 48887765332110                       00 11223457


Q ss_pred             cEEEcCCCCCCccEEEEEEEEEcCCCc-----CCceeeeeeeec
Q psy11549        212 AFTLEDLGLDGTVLMRVVISGVNAKGR-----SLPVIWDDFSMS  250 (261)
Q Consensus       212 ~~~i~~~~l~~~~~Y~~~~~a~N~~G~-----~~~s~~~~~~~~  250 (261)
                      .++|.+  |.+.+.|.|+|.|.|..|.     |..|.++.++++
T Consensus        83 ~~~l~~--L~p~T~Y~~~V~A~n~~G~~~~~~g~~S~~v~~~T~  124 (125)
T d2dtge3          83 GWLMRG--LKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTD  124 (125)
T ss_dssp             EEEECS--CCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBCC
T ss_pred             EEEECC--CccCCEEEEEEEEEeCCCccCCCCCCCcccEEEEcC
Confidence            889999  9999999999999999994     677888777654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.41  E-value=3.2e-07  Score=54.03  Aligned_cols=58  Identities=9%  Similarity=0.031  Sum_probs=41.3

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      ..|+.++|+|.+  .+..+..+.||+++....       ......|.|.+++..|+|.|  +|.|.|..
T Consensus        18 ~~G~~vtL~C~~--~~~~~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y--~C~a~~s~   75 (84)
T d1fnla1          18 LEKDSVTLKCQG--AYSPEDNSTQWFHNESLI-------SSQASSYFIDAATVNDSGEY--RCQTNLST   75 (84)
T ss_dssp             ETTCCEEEEEEC--CCBTTBCCCEEEETTEEE-------ESSCSEEEESSCCGGGCEEE--EEECSSSC
T ss_pred             eCCCeEEEEEEe--ccCCCCeEEEEeeeceee-------eecceeeEecCCcccCCEEE--EEEccCCC
Confidence            359999999997  444444455666543222       23447899999999999999  88887754

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.41  E-value=1e-06  Score=54.99  Aligned_cols=71  Identities=18%  Similarity=0.314  Sum_probs=48.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-------------CCce--EEeCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-------------GSER--FSSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-------------~~~~--~~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+..|++++|.|........ .+.||+-..+.....             ....  .........|.|.++..+|+|.|.
T Consensus        10 v~v~~G~sv~L~C~~s~~~~~-~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsg~Yy   88 (113)
T d2bnqd1          10 LSVPEGENLVLNCSFTDSAIY-NLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGDSATYL   88 (113)
T ss_dssp             EEEETTCCEEEEEEESCCCEE-EEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEEecCccc-CCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCCCcEEe
Confidence            677899999999998766544 799997432221110             0001  112345668999999999999999


Q ss_pred             EEEEcCC
Q psy11549        134 CAAQNAI  140 (261)
Q Consensus       134 C~~~~~~  140 (261)
                      |.+....
T Consensus        89 Ca~~~~~   95 (113)
T d2bnqd1          89 CAVRPTS   95 (113)
T ss_dssp             EEEEESS
T ss_pred             EeEecCC
Confidence            9987543

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=5.4e-08  Score=58.66  Aligned_cols=75  Identities=15%  Similarity=0.113  Sum_probs=51.0

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EEecCCCCcEEEcCCCCCCcc-EEEEEEEEEcCCCcCCceeee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NLTNLDTPAFTLEDLGLDGTV-LMRVVISGVNAKGRSLPVIWD  245 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~l~~~~-~Y~~~~~a~N~~G~~~~s~~~  245 (261)
                      ..|+.+.|.|.+  . +.|..-..|++......... .........|.|.++..+|.| .|  +|.|.|.+|..+.+..+
T Consensus        15 ~~G~~v~l~C~~--~-g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y--~C~a~N~~G~~~~s~~l   89 (92)
T d2ifga1          15 DVGDDVLLRCQV--E-GRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNV--TCWAENDVGRAEVSVQV   89 (92)
T ss_dssp             BTTCCEEEEEEE--E-CSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCE--EECCEETTEECCEEECC
T ss_pred             eCCCEEEEeeec--c-CCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEE--EEEEEcCCCEEEEEEEE
Confidence            359999999997  3 44544334445433332222 222334467999999999998 69  99999999998877665


Q ss_pred             ee
Q psy11549        246 DF  247 (261)
Q Consensus       246 ~~  247 (261)
                      .|
T Consensus        90 ~V   91 (92)
T d2ifga1          90 NV   91 (92)
T ss_dssp             CC
T ss_pred             EE
Confidence            54

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=2.4e-06  Score=52.53  Aligned_cols=69  Identities=22%  Similarity=0.324  Sum_probs=47.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+-..+....  .         ...++  ........|.|.++..+|++.|.|.
T Consensus        10 l~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa   88 (106)
T d1a0ql1          10 LSASLGGKVTITCKASQDIKK-YIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCL   88 (106)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCC-CeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEE
Confidence            667899999999987655544 59999743221111  0         01111  2344566899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        89 ~~~   91 (106)
T d1a0ql1          89 QYY   91 (106)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            754

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.8e-06  Score=51.42  Aligned_cols=73  Identities=14%  Similarity=0.171  Sum_probs=47.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-----------cCCceEE----eCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-----------VGSERFS----SGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-----------~~~~~~~----~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+.+|++++|.|....... ...+.|++...+....           ....++.    .......|.|.++..+|+|.|
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence            67889999999998764433 2257898732211100           0111111    234566899999999999999


Q ss_pred             EEEEEcCCc
Q psy11549        133 SCAAQNAIG  141 (261)
Q Consensus       133 ~C~~~~~~~  141 (261)
                      .|.+.....
T Consensus        86 ~C~v~~~~~   94 (108)
T d1hkfa_          86 WCRIYRPSD   94 (108)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEecCCC
Confidence            999886543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.39  E-value=8.4e-07  Score=55.53  Aligned_cols=70  Identities=14%  Similarity=0.338  Sum_probs=48.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc------cC-----CceEE----eCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD------VG-----SERFS----SGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~-----~~~~~----~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+.+|++++|.|........ .+.||+...+....      ..     ..++.    .......|.|.++..+|+|.|.
T Consensus        10 ~~~~~G~~vtL~C~~~~~~~~-~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~   88 (114)
T d2cdea1          10 LIILEGKNCTLQCNYTVSPFS-NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYI   88 (114)
T ss_dssp             EEEETTCCCEEEEEECCSCCS-EEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCcc-CceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccc
Confidence            668899999999998765544 79999754321110      00     01111    2334668999999999999999


Q ss_pred             EEEEcC
Q psy11549        134 CAAQNA  139 (261)
Q Consensus       134 C~~~~~  139 (261)
                      |.+...
T Consensus        89 Ca~~~~   94 (114)
T d2cdea1          89 CVVSDR   94 (114)
T ss_dssp             EEEECS
T ss_pred             eeeecC
Confidence            999864

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.2e-06  Score=53.52  Aligned_cols=85  Identities=7%  Similarity=-0.151  Sum_probs=54.6

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCC---eEEEEEEEeCCcc-------ceeE-E-EecC---CCCcEEEcCCCCCCc
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLP---QTFTLELYSASDL-------NLLV-N-LTNL---DTPAFTLEDLGLDGT  223 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p---~~~~~~~~~~~~~-------~~~~-~-~~~~---~~~~~~i~~~~l~~~  223 (261)
                      .|++..+.  .|+.++|.|.+   .+.|   .+.+.|++.....       .... . ....   ....|.|.+++..|.
T Consensus         6 ~P~~~~v~--~G~~v~l~C~v---~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   80 (113)
T d2dava1           6 KPQGGTVK--VGEDITFIAKV---KAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   80 (113)
T ss_dssp             CCCCCEEE--TTCCEEEEEEE---ECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             CCceEEEe--CCCEEEEEEEE---ccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHC
Confidence            46666664  59999999997   3333   2334455543211       1111 1 1111   123588999999999


Q ss_pred             cEEEEEEEEEcCCCcCCceeeeeeeec
Q psy11549        224 VLMRVVISGVNAKGRSLPVIWDDFSMS  250 (261)
Q Consensus       224 ~~Y~~~~~a~N~~G~~~~s~~~~~~~~  250 (261)
                      |.|  +|.|.|..|....+..+.|..+
T Consensus        81 G~Y--~C~a~N~~G~~~~~~~L~V~~~  105 (113)
T d2dava1          81 GNY--RCEVTYKDKFDSCSFDLEVHES  105 (113)
T ss_dssp             EEE--EEEEECSSCEEEECCEEEEECC
T ss_pred             eEE--EEEEEeCCCEEEEEEEEEEEcC
Confidence            999  9999999998877777777533

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=1.8e-06  Score=53.05  Aligned_cols=69  Identities=16%  Similarity=0.272  Sum_probs=47.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c-----------CCceEEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V-----------GSERFSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~-----------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+...+....  +           .............|.|.++..+|+|.|.|.
T Consensus        11 ~~~~~G~svtl~C~~s~~~~~-~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   89 (107)
T d1c5cl1          11 LSASLGERVSLTCRTSQEISG-YLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCL   89 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCC-CEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEe
Confidence            667899999999997765554 69999743322211  0           001112234456899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        90 ~~~   92 (107)
T d1c5cl1          90 QYA   92 (107)
T ss_dssp             ECS
T ss_pred             cCc
Confidence            764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=1e-07  Score=59.05  Aligned_cols=44  Identities=25%  Similarity=0.399  Sum_probs=35.7

Q ss_pred             CceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         12 SARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        12 ~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +|....++++|.|.+++.+|+|.|+|.+.+..+...+..+.|.|
T Consensus        63 gR~~l~~ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          63 GREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             SSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             eEEEEcccccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            46777788999999999999999999998876554455566655

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=1.9e-06  Score=53.84  Aligned_cols=71  Identities=14%  Similarity=0.248  Sum_probs=47.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc------------cCCceEEe----CCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD------------VGSERFSS----GSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~------------~~~~~~~~----~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+.+|++++|.|..........+.||+-..+....            ....++..    ......|.|.++..+|+|.|
T Consensus         9 l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (114)
T d3bp5a1           9 LTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGIY   88 (114)
T ss_dssp             EEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeEE
Confidence            668899999999998765443368999743221110            11122221    22345799999999999999


Q ss_pred             EEEEEcC
Q psy11549        133 SCAAQNA  139 (261)
Q Consensus       133 ~C~~~~~  139 (261)
                      .|.+...
T Consensus        89 yCa~~~~   95 (114)
T d3bp5a1          89 LCGAISL   95 (114)
T ss_dssp             EEEEECS
T ss_pred             EEEEEeC
Confidence            9998754

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.5e-07  Score=55.23  Aligned_cols=77  Identities=10%  Similarity=0.054  Sum_probs=50.4

Q ss_pred             ecCCeEEEEeecCCCCCCCeE--EEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQT--FTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWD  245 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~  245 (261)
                      ..|+.++|.|.+  .++.|..  ...|+++.................++|..++-+++|.|  +|.|.|.+|....+.++
T Consensus        17 ~~G~~~~L~C~v--~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~y--tC~A~n~~g~~~~~~~~   92 (103)
T d1iama1          17 PVGKQLTLRCQV--EGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQF--SCRTELDLRPQGLELFE   92 (103)
T ss_dssp             CTTSEEEEEEEE--ECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEE--EEEEEEECGGGTSCEEE
T ss_pred             eCCCEEEEEEEe--cCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEE--EEEEEeCCCCccCeEee
Confidence            359999999998  5555522  23344443222111111112234678888889999999  99999999988777777


Q ss_pred             eee
Q psy11549        246 DFS  248 (261)
Q Consensus       246 ~~~  248 (261)
                      .+.
T Consensus        93 ~~s   95 (103)
T d1iama1          93 NTS   95 (103)
T ss_dssp             EEC
T ss_pred             eEc
Confidence            664

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.35  E-value=3.6e-07  Score=53.96  Aligned_cols=59  Identities=7%  Similarity=-0.106  Sum_probs=41.4

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      ..|+.++|.|.+  .+..+....+|+++....       ......|.|.+++.++.|.|  +|.|.|..+
T Consensus        17 ~~G~~v~L~C~~--~~~~~~~~~~w~~~g~~~-------~~~~~~l~i~~v~~~dsG~Y--~C~a~ns~~   75 (85)
T d2fcba1          17 LQEDSVTLTCRG--THSPESDSIQWFHNGNLI-------PTHTQPSYRFKANNNDSGEY--TCQTGQTSL   75 (85)
T ss_dssp             ETTCEEEEEEEC--SSCCCTTCCEEEETTEEC-------TTCCSSEEEEECCGGGCEEE--EEECTTSBC
T ss_pred             cCCCeEEEEEEE--eeccceeEEEeecccccc-------cccccceEEeeccccCCcEE--EEECCCCcc
Confidence            359999999997  343333344555543222       33457899999999999999  888888654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.34  E-value=1e-06  Score=55.16  Aligned_cols=70  Identities=17%  Similarity=0.219  Sum_probs=48.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-----------CCceEEe----CCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSERFSS----GSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----------~~~~~~~----~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+.+|++++|.|........ .+.||+...+.....           ...++..    ......|.|.++.++|+|.|.
T Consensus        11 v~v~~G~~vtL~C~~~~~~~~-~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Yy   89 (115)
T d1lp9e1          11 VTLTEGLPVMLNCTYQSTYSP-FLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYY   89 (115)
T ss_dssp             EEEETTSCEEECEEEECSSSC-CEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEE
T ss_pred             EEECCCCCEEEEEEEeCCCcC-CeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccce
Confidence            678899999999998876655 699997432211110           0111221    223457999999999999999


Q ss_pred             EEEEcC
Q psy11549        134 CAAQNA  139 (261)
Q Consensus       134 C~~~~~  139 (261)
                      |.+...
T Consensus        90 Ca~~~~   95 (115)
T d1lp9e1          90 CALFLA   95 (115)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            987654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.34  E-value=2.3e-06  Score=53.46  Aligned_cols=72  Identities=15%  Similarity=0.230  Sum_probs=47.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c----CCc--------eE--EeCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V----GSE--------RF--SSGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~----~~~--------~~--~~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+.+|++++|.|..........+.||+-..+....  +    ...        .+  ........|.|.++..+|+|.|
T Consensus        10 v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   89 (114)
T d2ak4d1          10 ISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAVY   89 (114)
T ss_dssp             EEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCCc
Confidence            678899999999987654443268999732221110  0    000        11  1233456899999999999999


Q ss_pred             EEEEEcCC
Q psy11549        133 SCAAQNAI  140 (261)
Q Consensus       133 ~C~~~~~~  140 (261)
                      .|.+....
T Consensus        90 yCa~~~~~   97 (114)
T d2ak4d1          90 FCALSGFY   97 (114)
T ss_dssp             EEEEECSB
T ss_pred             eEeCCCCC
Confidence            99876543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.7e-07  Score=56.24  Aligned_cols=72  Identities=14%  Similarity=0.123  Sum_probs=45.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCC--CceeEEEEcCCccccc-----------cCCceE----EeCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPP--ARSFKWKFNNSGETLD-----------VGSERF----SSGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~-----------~~~~~~----~~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|++++|.|.......  ...+.|++...+....           ....++    ........|.|.++..+|+|.
T Consensus         9 V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG~   88 (116)
T d1xeda_           9 VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSGR   88 (116)
T ss_dssp             EEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCEE
Confidence            67789999999998754321  2257898743221110           001111    223445689999999999999


Q ss_pred             EEEEEEcCC
Q psy11549        132 LSCAAQNAI  140 (261)
Q Consensus       132 y~C~~~~~~  140 (261)
                      |.|.+....
T Consensus        89 Y~C~v~~~~   97 (116)
T d1xeda_          89 YKCGLGINS   97 (116)
T ss_dssp             EEEEESCGG
T ss_pred             EEEEEEcCC
Confidence            999987543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=2.3e-06  Score=52.55  Aligned_cols=69  Identities=20%  Similarity=0.365  Sum_probs=47.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+...+....  .         ...++.  ..+....|.|.++..+|+|.|.|.
T Consensus        11 lsv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (106)
T d1i8ka_          11 LSVATGEKVTIRCMTSTDIDD-DMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCL   89 (106)
T ss_dssp             EECCTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCc-cEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEe
Confidence            667899999999987655444 69999743221111  0         111222  234466899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        90 ~~~   92 (106)
T d1i8ka_          90 QSF   92 (106)
T ss_dssp             ECS
T ss_pred             cCc
Confidence            654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=2.7e-06  Score=52.37  Aligned_cols=69  Identities=22%  Similarity=0.384  Sum_probs=48.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-----------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+...+.....           ...++  ........|.|.++..+|+|.|.|.
T Consensus        11 l~v~~G~~vtL~C~~~~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1j1pl_          11 LSVTPGNSVSLSCRASQSIGN-NLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCc-ceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEE
Confidence            668899999999987655444 699997543322110           01122  2344567899999999999999997


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +.+
T Consensus        90 ~~~   92 (107)
T d1j1pl_          90 QAN   92 (107)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.32  E-value=2e-06  Score=53.33  Aligned_cols=70  Identities=10%  Similarity=0.170  Sum_probs=47.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|..........+.||+...+....  +         ...++  ........|.|.++..+|+|.|.|.
T Consensus         8 vsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa   87 (110)
T d2esvd1           8 MDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCI   87 (110)
T ss_dssp             EEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEE
Confidence            678899999999997654443368999743322111  0         01111  2234466899999999999999999


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        88 ~~~   90 (110)
T d2esvd1          88 VVR   90 (110)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            764

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=3.5e-06  Score=51.84  Aligned_cols=69  Identities=22%  Similarity=0.337  Sum_probs=48.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-----------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|........ .+.||+-..+.....           ...++  ........|.|.++..+|+|.|.|.
T Consensus        11 ltv~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1ospl1          11 FSVSLGDRVTITCKASEDIYS-RLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQ   89 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEE
T ss_pred             EEECCCCCEEEEEecCCCccc-ccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEe
Confidence            678899999999988765544 699997433222110           11122  2244456899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        90 ~~~   92 (107)
T d1ospl1          90 QYW   92 (107)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            754

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.31  E-value=2.3e-06  Score=51.41  Aligned_cols=68  Identities=13%  Similarity=0.046  Sum_probs=46.1

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .+..|++++|.|......  ..+.+++++..................+.|.|.+++..|+|.|.|.....
T Consensus        12 ~V~~G~~VTl~C~~~~~~--~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          12 LVKSEETVILQCWSDVMF--EHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             EEETTCCEEEEEEESSCC--SEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             ccCCCCcEEEEECCCCCC--CEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            467899999999966443  37889887743221111111122334567999999999999999988654

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.7e-06  Score=51.10  Aligned_cols=64  Identities=16%  Similarity=0.167  Sum_probs=45.5

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .+..|++++|.|........ .+.|++++.....     ..........|.|.+++.+|+|.|+|.....
T Consensus        15 ~V~~G~~VTL~C~~~~~~~~-~f~L~k~g~~~~~-----~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          15 VLMPGENISLTCSSAHIPFD-RFSLAKEGELSLP-----QHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             EECTTCCCEEEEECSSSCCS-EEEEEETTCSSCC-----SEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             ccCCCCeEEEEEeCCCCCce-EEEEEECCcccce-----EEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            47799999999986433333 6889998742211     1122334567999999999999999998754

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=3.1e-06  Score=51.97  Aligned_cols=75  Identities=13%  Similarity=0.137  Sum_probs=47.6

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce-eE---EEecC-------CCCcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL-LV---NLTNL-------DTPAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~-~~---~~~~~-------~~~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      ..|+.+.|.|.+  . +.|.....|++....... ..   .....       ....|.|.+++.+|.|.|  +|.|.|..
T Consensus        17 ~~g~~v~L~C~~--~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y--~C~a~n~~   91 (105)
T d1nbqa1          17 PENNPVKLSCAY--S-GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY--TCMVSEEG   91 (105)
T ss_dssp             ETTCCCEEECEE--E-SCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE--EEEEEETT
T ss_pred             eCCCeEEEEEEe--C-CCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeE--EEEEEECC
Confidence            459999999997  3 444433334444322211 11   11110       124689999999999999  99999999


Q ss_pred             CcCCceeeeee
Q psy11549        237 GRSLPVIWDDF  247 (261)
Q Consensus       237 G~~~~s~~~~~  247 (261)
                      |.......+.+
T Consensus        92 G~~~~~~~v~v  102 (105)
T d1nbqa1          92 GNSYGEVKVKL  102 (105)
T ss_dssp             SSCEECCEEEC
T ss_pred             CCEEEEEEEEE
Confidence            98765555544

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.6e-06  Score=54.19  Aligned_cols=71  Identities=20%  Similarity=0.367  Sum_probs=47.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc----c-------------CCceE--EeCCceeEEEEecCCCCcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD----V-------------GSERF--SSGSRGSMLRYTPVTELDY  129 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----~-------------~~~~~--~~~~~~~~l~i~~~~~~d~  129 (261)
                      ..+..|++++|.|.+........+.|++-..+....    +             ...++  ........|.|.++..+|+
T Consensus        10 ~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~~Ds   89 (114)
T d1akjd_          10 RTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRRENE   89 (114)
T ss_dssp             CCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCCCCC
Confidence            457799999999998765433268999743221110    0             01112  2233456899999999999


Q ss_pred             eEEEEEEEcC
Q psy11549        130 GTLSCAAQNA  139 (261)
Q Consensus       130 g~y~C~~~~~  139 (261)
                      |.|.|.+...
T Consensus        90 g~YyCa~~~~   99 (114)
T d1akjd_          90 GYYFCSALSN   99 (114)
T ss_dssp             EEEEEEEEET
T ss_pred             EEEeEeEcCC
Confidence            9999998754

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.29  E-value=5.2e-06  Score=51.43  Aligned_cols=72  Identities=31%  Similarity=0.365  Sum_probs=47.6

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccc---cccCCceEE----eCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGET---LDVGSERFS----SGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~---~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      +.+..|++++|.|...+.. ....+.||+...+..   +.....++.    .......|.|.++..+|+|.|.|.+....
T Consensus         9 ~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_           9 VTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             EEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBTT
T ss_pred             EEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecCC
Confidence            6678999999999886543 222699997432211   111122222    22345689999999999999999877543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.29  E-value=1.7e-06  Score=54.21  Aligned_cols=70  Identities=20%  Similarity=0.268  Sum_probs=47.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c----CC--------ceE--EeCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V----GS--------ERF--SSGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~----~~--------~~~--~~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+.+|++++|.|........ .+.||+-..+....  +    ..        .+.  ........|.|.++..+|+|.|
T Consensus        10 v~v~~G~svtl~C~~~~~~~~-~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (115)
T d1i9ea_          10 VTVSEGASLQLRCKYSYSATP-YLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVY   88 (115)
T ss_dssp             EEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEcCCCCC-CEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccccccee
Confidence            778899999999998765445 68899732221110  0    00        011  1233456899999999999999


Q ss_pred             EEEEEcC
Q psy11549        133 SCAAQNA  139 (261)
Q Consensus       133 ~C~~~~~  139 (261)
                      .|.+...
T Consensus        89 yCa~~~~   95 (115)
T d1i9ea_          89 FCAVSGF   95 (115)
T ss_dssp             EEEEEET
T ss_pred             cccccCC
Confidence            9987643

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=5.5e-06  Score=50.99  Aligned_cols=69  Identities=20%  Similarity=0.368  Sum_probs=47.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+...+....  +         ...++  ........|.|.++..+|+|.|.|.
T Consensus        11 l~v~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa   89 (107)
T d1kcvl1          11 MGMSVGEAVTLNCKASENVGT-YVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCG   89 (107)
T ss_dssp             EEEETTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EeECCCCCEEEEEEecCCcCC-ceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEE
Confidence            668899999999998766555 69999743221111  0         01111  2344566899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        90 ~~~   92 (107)
T d1kcvl1          90 QSY   92 (107)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.28  E-value=3e-06  Score=53.00  Aligned_cols=71  Identities=13%  Similarity=0.214  Sum_probs=47.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c----------CCceE--E--eCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V----------GSERF--S--SGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~----------~~~~~--~--~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+.+|++++|.|..........+.||+...+....  +          ...++  .  .......|.|.++..+|+|.|
T Consensus         9 v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   88 (115)
T d1fo0a_           9 ISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVY   88 (115)
T ss_dssp             EEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccc
Confidence            678899999999987654443268999743221110  0          00111  1  133456799999999999999


Q ss_pred             EEEEEcC
Q psy11549        133 SCAAQNA  139 (261)
Q Consensus       133 ~C~~~~~  139 (261)
                      .|.+...
T Consensus        89 yCa~~~~   95 (115)
T d1fo0a_          89 FCAMRGD   95 (115)
T ss_dssp             EEEEECC
T ss_pred             cceeecC
Confidence            9998754

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=9e-08  Score=56.39  Aligned_cols=73  Identities=14%  Similarity=-0.009  Sum_probs=46.5

Q ss_pred             CCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCc
Q psy11549        159 PPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGR  238 (261)
Q Consensus       159 ~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~  238 (261)
                      .|.++.+  ..|+.+.|.|.+   .|.|..-+.|+++....      .    ....+.+++..|.|.|  +|.|.|..|.
T Consensus        10 ~p~~~~~--~~G~~~~l~C~a---~G~P~P~v~W~k~g~~~------~----~~~~~~~v~~~d~G~Y--~C~A~N~~G~   72 (84)
T d2oz4a3          10 CPGNWTW--PENSQQTPMCQA---WGNPLPELKCLKDGTFP------L----PIGESVTVTRDLEGTY--LCRARSTQGE   72 (84)
T ss_dssp             SCSEEEE--ETTCEECCCCCC---EEESCCEEEEEETTTEE------C----CTTSCEECCGGGCEEE--EEEEEETTEE
T ss_pred             CCccEEE--eCCCEEEEEEEE---eEcCccEEEEEEeeccc------e----eeeeeeccccCCCCEE--EEEEEcCCCE
Confidence            3444444  459999999997   44454434444443221      1    1122345668999999  9999999998


Q ss_pred             CCceeeeeee
Q psy11549        239 SLPVIWDDFS  248 (261)
Q Consensus       239 ~~~s~~~~~~  248 (261)
                      ......+.|.
T Consensus        73 ~~~~~~l~V~   82 (84)
T d2oz4a3          73 VTREVTVNVL   82 (84)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            7666666554

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.27  E-value=7.1e-07  Score=55.52  Aligned_cols=74  Identities=9%  Similarity=0.000  Sum_probs=48.1

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEe-CCccce------eEEEecCCCCcEEEcCCCCCCcc---EEEEEEEEEcCCC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYS-ASDLNL------LVNLTNLDTPAFTLEDLGLDGTV---LMRVVISGVNAKG  237 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~i~~~~l~~~~---~Y~~~~~a~N~~G  237 (261)
                      ..|+.+.|.|.+  ..+.|..-..|++. ......      ...........|.|.++++.|.|   .|  .|.|.|.+|
T Consensus        15 ~EG~~~~L~C~v--~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y--~C~A~N~~g   90 (111)
T d1biha2          15 IEGRPFQLDCVL--PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKY--VCTAKNAAV   90 (111)
T ss_dssp             BTTEEEEECCCC--CEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEE--EEEEECTTC
T ss_pred             cCCCeEEEEEEc--ccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEE--EEEEEeCCC
Confidence            569999999986  45666554444454 222110      01122334578999998888877   58  999999999


Q ss_pred             cCCceeee
Q psy11549        238 RSLPVIWD  245 (261)
Q Consensus       238 ~~~~s~~~  245 (261)
                      ..+....+
T Consensus        91 ~~~~~~~~   98 (111)
T d1biha2          91 DEEVVLVE   98 (111)
T ss_dssp             SSCEEEEE
T ss_pred             CceEEEEE
Confidence            77654433

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.27  E-value=2.7e-06  Score=53.25  Aligned_cols=71  Identities=18%  Similarity=0.186  Sum_probs=46.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcC--Cccccc------------cCCceEE----eCCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNN--SGETLD------------VGSERFS----SGSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~--~~~~~~------------~~~~~~~----~~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+.+|++++|.|..........+.||+-.  .+..+-            ....++.    .......|+|.++..+|+|
T Consensus        10 ~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg   89 (116)
T d1tvda_          10 QTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDSA   89 (116)
T ss_dssp             EEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCccccccc
Confidence            678899999999988655433379999732  211110            0111222    1223457999999999999


Q ss_pred             EEEEEEEcC
Q psy11549        131 TLSCAAQNA  139 (261)
Q Consensus       131 ~y~C~~~~~  139 (261)
                      .|.|.+...
T Consensus        90 ~YyCa~~~~   98 (116)
T d1tvda_          90 TYYCAFTLP   98 (116)
T ss_dssp             EEEEEEECT
T ss_pred             cceeeEecC
Confidence            999987754

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=3.8e-07  Score=58.35  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=34.4

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEeecee
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKYAPIC   61 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~~p~~   61 (261)
                      .+|.|.+++.+|+|.|+|.+.+..+.. +..+.|.|..|+..
T Consensus        81 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~P~~~  121 (126)
T d1pkoa_          81 VALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPFYW  121 (126)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECTTTT
T ss_pred             EEEEEEEEchhHCeEEEEEEEECCCEE-EEEEEEEEeCCCEE
Confidence            489999999999999999999887665 66788999765543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.26  E-value=4e-06  Score=51.55  Aligned_cols=69  Identities=19%  Similarity=0.380  Sum_probs=47.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-c----------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-V----------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-~----------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+...+.... +          ...++  ........|.|.++..+|++.|.|.
T Consensus        11 l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa   89 (107)
T d1tjgl1          11 LSASVGDRITITCRASQGVTS-ALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQ   89 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEECCCCCEEEEEEECCCCCc-cEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEE
Confidence            667899999999998765444 79999754332211 0          01111  2344566899999999999999997


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        90 ~~~   92 (107)
T d1tjgl1          90 QLH   92 (107)
T ss_dssp             ECS
T ss_pred             ECc
Confidence            654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.7e-06  Score=49.67  Aligned_cols=61  Identities=18%  Similarity=0.269  Sum_probs=44.6

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQ  137 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~  137 (261)
                      .+..|++++|.|.....  ...+.|++++......     .......+.|.|.++...|+|.|+|...
T Consensus        14 ~V~~G~~VTL~C~~~~~--~~~f~L~Keg~~~~~~-----~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          14 EVISGEKVTFYCRLDTA--TSMFLLLKEGRSSHVQ-----RGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             EEETTCEEEEEEECSSS--CSEEEEEEESSSCEEE-----EEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             cccCCCcEEEEECCCCC--CCEEEEEECCCcccee-----ecCCCceeEEEecccChhcCceEEEEeE
Confidence            36789999999986543  3379999987532221     1223456689999999999999999754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.8e-06  Score=53.15  Aligned_cols=71  Identities=13%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCC---CceeEEEEcCCccccccCC---------ceEE-eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPP---ARSFKWKFNNSGETLDVGS---------ERFS-SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~---------~~~~-~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|+.++|+|.......   ...+.|.+++.........         .+.. ...+..+|.|.++..+|+|.|.|.
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C~   83 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV   83 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEEE
Confidence            56789999999998764332   2257777654321110000         0111 223356899999999999999999


Q ss_pred             EEcC
Q psy11549        136 AQNA  139 (261)
Q Consensus       136 ~~~~  139 (261)
                      +.+.
T Consensus        84 V~~~   87 (105)
T d1dr9a1          84 VLKY   87 (105)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8754

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.25  E-value=6.4e-06  Score=50.64  Aligned_cols=69  Identities=22%  Similarity=0.346  Sum_probs=47.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c----------CC-ceEEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V----------GS-ERFSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~----------~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+...+....  +          .. ...........|.|.++..+|+|.|.|.
T Consensus        11 l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA   89 (108)
T d1jhll_          11 LVASPGETITINCRASKSISK-SLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQ   89 (108)
T ss_dssp             EEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEE
T ss_pred             EEecCCCCEEEEEEccCCcCC-ceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEe
Confidence            667899999999998765544 69999743322110  0          00 1112344566899999999999999997


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        90 ~~~   92 (108)
T d1jhll_          90 QHN   92 (108)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            654

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.25  E-value=6.1e-06  Score=51.18  Aligned_cols=69  Identities=17%  Similarity=0.242  Sum_probs=47.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c----C-----CceE----EeCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V----G-----SERF----SSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~----~-----~~~~----~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+.+|++++|.|........ .+.||+...+....  +    .     ..++    ........|.|.++..+|+|.|.
T Consensus        10 ~~~~~G~svtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1bd2d1          10 LSVQEGRISILNCDYTNSMFD-YFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYF   88 (111)
T ss_dssp             EEEETTSCEEEEEEECCTTCC-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCCC-eEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEE
Confidence            667899999999987765555 68999743322211  0    0     0111    22345678999999999999999


Q ss_pred             EEEEc
Q psy11549        134 CAAQN  138 (261)
Q Consensus       134 C~~~~  138 (261)
                      |.+..
T Consensus        89 Ca~~~   93 (111)
T d1bd2d1          89 CAAME   93 (111)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            98774

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.9e-06  Score=51.81  Aligned_cols=77  Identities=12%  Similarity=0.154  Sum_probs=49.5

Q ss_pred             eecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE----EEec-------CCCCcEEEcCCCCCCccEEEEEEEEEcC
Q psy11549        167 NETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV----NLTN-------LDTPAFTLEDLGLDGTVLMRVVISGVNA  235 (261)
Q Consensus       167 ~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~----~~~~-------~~~~~~~i~~~~l~~~~~Y~~~~~a~N~  235 (261)
                      ...|+.+.|.|..  . +.|.....|++.........    ....       .....+.|.++..+|.|.|  +|.|.|.
T Consensus        13 v~~G~~v~l~C~~--~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y--~C~a~n~   87 (102)
T d1f97a1          13 VPENESIKLTCTY--S-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEY--TCMVSEE   87 (102)
T ss_dssp             EETTCCEEEECEE--E-SCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEE--EEEEEET
T ss_pred             EeCCCEEEEEEEc--C-CCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEE--EEEEEEC
Confidence            3569999999997  3 34433333444332221111    0100       1235689999999999999  9999999


Q ss_pred             CCcCCceeeeeee
Q psy11549        236 KGRSLPVIWDDFS  248 (261)
Q Consensus       236 ~G~~~~s~~~~~~  248 (261)
                      .|....+..+.+.
T Consensus        88 ~g~~~~~~~v~v~  100 (102)
T d1f97a1          88 GGQNYGEVSIHLT  100 (102)
T ss_dssp             TSSSEEEEEEEEE
T ss_pred             CCCEEEEEEEEEE
Confidence            9988776666553

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=6.3e-06  Score=50.63  Aligned_cols=69  Identities=17%  Similarity=0.321  Sum_probs=47.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+-..+....           ....++.  .......|.|.++.++|++.|.|.
T Consensus        11 l~~~~G~svtl~C~~s~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa   89 (107)
T d1mexl1          11 MSTSLGNRVSVTCKASQNVGT-NVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQ   89 (107)
T ss_dssp             EEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCC-ceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEe
Confidence            678899999999987655444 69999743221110           0011222  234567899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        90 ~~~   92 (107)
T d1mexl1          90 QYN   92 (107)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=5.1e-06  Score=51.01  Aligned_cols=69  Identities=20%  Similarity=0.351  Sum_probs=47.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+...+....  +         ...++  ........|.|.++..+|+|.|.|.
T Consensus        10 ~~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1          10 LTVSPGEKLTISCKASESVTS-RMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             EEECTTSCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCc-cEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence            678899999999998765544 69999753321111  0         01112  2234456899999999999999997


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        89 ~~~   91 (106)
T d1lk3l1          89 QSW   91 (106)
T ss_dssp             ECS
T ss_pred             ccc
Confidence            543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.22  E-value=6.5e-06  Score=51.63  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=48.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc----------------cCCceEE---eCCceeEEEEecCCCCcC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD----------------VGSERFS---SGSRGSMLRYTPVTELDY  129 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----------------~~~~~~~---~~~~~~~l~i~~~~~~d~  129 (261)
                      +.+.+|++++|.|........ .+.||+-..+..+.                ....++.   .......|.|.++..+|+
T Consensus        11 ~~~~~G~~v~L~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Ds   89 (118)
T d2ij0c1          11 VIVKSGTSVKIECRSLDTNIH-TMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDS   89 (118)
T ss_dssp             EEECTTCCEEEEEEECSSCCS-EEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGC
T ss_pred             EEEcCCCCEEEEEEEcCCccc-EEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccC
Confidence            567899999999998766555 79999743322111                0111222   223345799999999999


Q ss_pred             eEEEEEEEcC
Q psy11549        130 GTLSCAAQNA  139 (261)
Q Consensus       130 g~y~C~~~~~  139 (261)
                      |.|.|.+...
T Consensus        90 a~YyCa~~~~   99 (118)
T d2ij0c1          90 GFYVCSALAG   99 (118)
T ss_dssp             EEEEEEEECS
T ss_pred             ceEEEEEecC
Confidence            9999998654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.22  E-value=6.5e-06  Score=49.74  Aligned_cols=67  Identities=9%  Similarity=0.036  Sum_probs=44.6

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+..|++++|.|.....  ...+.|++++......  ............+.|..+...|+|.|+|......
T Consensus        16 ~V~~G~~VTL~C~~~~~--~~~f~L~k~g~~~~~~--~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~~   82 (99)
T d1nkra2          16 TVLAGENVTLSCSSRSS--YDMYHLSREGEAHERR--LPAGPKVNGTFQADFPLGPATHGGTYRCFGSFHD   82 (99)
T ss_dssp             EECTTCEEEEEEEESSC--CSEEEEEETTCSSCEE--EECEEEETTEEEEEEEEEECCSCEEEEEEEEETT
T ss_pred             cccCCCeEEEEECCCCC--ccEEEEEECCCccccE--EEccccCCccEEEEEeccccccCEEEEEEeecCC
Confidence            46789999999986543  3379999987432211  1111223334467888888899999999876543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2.7e-08  Score=62.79  Aligned_cols=77  Identities=12%  Similarity=0.060  Sum_probs=50.3

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccc------eeEEEecC---CCCcEEEcCCCCCC-ccEEEEEEEEEcCCC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLN------LLVNLTNL---DTPAFTLEDLGLDG-TVLMRVVISGVNAKG  237 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~i~~~~l~~-~~~Y~~~~~a~N~~G  237 (261)
                      ..|+.+.|.|.+  .+..|....+|++......      ........   ....|.|.++...| +|.|  +|.|.|..|
T Consensus        19 ~~G~~~~l~C~v--~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y--~C~A~N~~G   94 (115)
T d2crya1          19 LHGEKGQIKCFI--RSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY--NCTAWNSFG   94 (115)
T ss_dssp             CTTSCCCCCEEE--CCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE--EEEEECSSC
T ss_pred             ecCCEEEEEEEe--ecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEE--EEEEEECCC
Confidence            469999999997  4444544555555432221      01111111   11368899988888 6899  999999999


Q ss_pred             cCCceeeeeee
Q psy11549        238 RSLPVIWDDFS  248 (261)
Q Consensus       238 ~~~~s~~~~~~  248 (261)
                      ....+..+.+.
T Consensus        95 ~~~~~~~L~V~  105 (115)
T d2crya1          95 SDTEIIRLKEQ  105 (115)
T ss_dssp             EEEEEECCCCS
T ss_pred             eEEEEEEEEEE
Confidence            88777777665

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.21  E-value=3.8e-06  Score=50.38  Aligned_cols=65  Identities=22%  Similarity=0.312  Sum_probs=44.0

Q ss_pred             CCcEEEEEEEeeCCCCceeEEEEcCCcccc----ccC------CceEE----eCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         74 SESVDIHCAVEADPPARSFKWKFNNSGETL----DVG------SERFS----SGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        74 g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~----~~~------~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      |++++|.|........ .+.||+...+...    ...      ..++.    .......|.|.++.++|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~-~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQ-SFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCC-EEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCC-cEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            7899999998766555 7999974332211    001      11121    2334568999999999999999998753

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.20  E-value=2.5e-06  Score=52.96  Aligned_cols=69  Identities=19%  Similarity=0.216  Sum_probs=46.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc------C-------CceE--EeCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV------G-------SERF--SSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~------~-------~~~~--~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+.+|++++|.|........ .+.||+-..+.....      .       ....  ........|.|.++..+|+|.|.
T Consensus         9 ~~~~~G~~vtl~C~~~~~~~~-~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (110)
T d1u3ha1           9 LTVWEGETAILNCSYENSAFD-YFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF   87 (110)
T ss_dssp             EEEETTSCEEEEEEECCTTEE-EEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEE
T ss_pred             EEEcCCCCEEEEEEecCCCCc-EEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEe
Confidence            667899999999998754434 699997532211110      0       0001  12344568999999999999999


Q ss_pred             EEEEc
Q psy11549        134 CAAQN  138 (261)
Q Consensus       134 C~~~~  138 (261)
                      |.+..
T Consensus        88 Ca~~~   92 (110)
T d1u3ha1          88 CAASA   92 (110)
T ss_dssp             ECCEE
T ss_pred             eeecC
Confidence            99764

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.19  E-value=6.9e-06  Score=51.07  Aligned_cols=70  Identities=24%  Similarity=0.330  Sum_probs=46.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCcccc---ccCCceEE----eCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETL---DVGSERFS----SGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~---~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      +.+.+|++++|.|...+... ...+.||+...+...   .....++.    .......|.|.++..+|+|.|.|.+..
T Consensus        10 ~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_          10 ATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             EEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            66789999999999875432 226999974322111   11112221    233455899999999999999999864

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.19  E-value=8.7e-06  Score=50.01  Aligned_cols=69  Identities=23%  Similarity=0.371  Sum_probs=47.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|........ .+.||+...+....  +         ...++  ........|.|.++..+|++.|.|.
T Consensus        11 l~~~~G~svtl~C~~s~~~~~-~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1d5il1          11 MYASLGERVTITCKASQDINS-YLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCL   89 (107)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCC-ccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEee
Confidence            667899999999987665444 68999753322111  0         01122  2344556899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      ...
T Consensus        90 ~~~   92 (107)
T d1d5il1          90 QYD   92 (107)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.18  E-value=3.9e-06  Score=51.27  Aligned_cols=69  Identities=22%  Similarity=0.284  Sum_probs=47.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-----------CCce--EEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSER--FSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----------~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|........ .+.||+-..+.....           ...+  .........|.|.++..+|+|.|.|.
T Consensus         8 l~~~~G~svtl~C~~~~~~~~-~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           8 VSVSPGQTARITCSANALPNQ-YAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCC-CEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            678899999999987654434 689997433222110           0011  12344567899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        87 ~~~   89 (103)
T d8faba1          87 AWD   89 (103)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.1e-06  Score=50.53  Aligned_cols=70  Identities=19%  Similarity=0.226  Sum_probs=42.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCC--ceeE--EEEcCCccccc---------cC----CceEEeCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPA--RSFK--WKFNNSGETLD---------VG----SERFSSGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~--~~~~--W~~~~~~~~~~---------~~----~~~~~~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+..|++++|+|........  ..+.  |.+........         ..    ..+........+|.|.++..+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            567799999999998644331  1233  33332211110         00    0111233345689999999999999


Q ss_pred             EEEEEEc
Q psy11549        132 LSCAAQN  138 (261)
Q Consensus       132 y~C~~~~  138 (261)
                      |.|.+..
T Consensus        84 Y~C~V~~   90 (110)
T d1ncna_          84 YQCIIHH   90 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            9999864

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.17  E-value=4e-06  Score=52.39  Aligned_cols=70  Identities=17%  Similarity=0.287  Sum_probs=47.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----c-CC------ceE--E--eCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----V-GS------ERF--S--SGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~-~~------~~~--~--~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+.+|++++|.|........ .+.||+-..+....     . ..      .++  .  .......|.|.++..+|+|.|
T Consensus        10 v~~~~G~~vtl~C~~s~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   88 (115)
T d1j8hd1          10 VSVSEGALVLLRCNYSSSVPP-YLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEY   88 (115)
T ss_dssp             EEEETTSCEEECCEEECSSCC-EEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEeCCCCce-eEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccc
Confidence            778899999999998765444 79999743221110     0 00      111  1  122344799999999999999


Q ss_pred             EEEEEcC
Q psy11549        133 SCAAQNA  139 (261)
Q Consensus       133 ~C~~~~~  139 (261)
                      .|.+...
T Consensus        89 yCa~~~~   95 (115)
T d1j8hd1          89 FCAVSES   95 (115)
T ss_dssp             EEEEESS
T ss_pred             eeeecCC
Confidence            9998754

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.17  E-value=1e-05  Score=49.59  Aligned_cols=69  Identities=19%  Similarity=0.336  Sum_probs=47.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-----------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+...+.....           ...++  ........|.|.++.++|++.|.|.
T Consensus        10 l~~~~G~svtL~C~~~~~~~~-~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1op3k1          10 LSASVGDTITITCRASQSIET-WLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQ   88 (106)
T ss_dssp             EEECTTCEEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCC-cEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeee
Confidence            668899999999988765444 699997533221110           00112  2344556899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        89 ~~~   91 (106)
T d1op3k1          89 HYA   91 (106)
T ss_dssp             EEC
T ss_pred             eCC
Confidence            764

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.17  E-value=1e-05  Score=49.87  Aligned_cols=69  Identities=23%  Similarity=0.416  Sum_probs=47.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|........ .+.||+...+....  +         ...++  ........|.|.++..+|+|.|.|.
T Consensus        11 l~~~~G~svtL~C~~s~~~~~-~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA   89 (109)
T d1mqkl_          11 LSASVGETVTITCRASENIYS-YLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQ   89 (109)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCcCc-ccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEe
Confidence            667789999999998755444 59999843322111  0         00112  2244566899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        90 ~~~   92 (109)
T d1mqkl_          90 HHY   92 (109)
T ss_dssp             ECS
T ss_pred             eeC
Confidence            764

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.17  E-value=8.5e-06  Score=50.21  Aligned_cols=70  Identities=16%  Similarity=0.325  Sum_probs=46.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|..........+.||+...+....  +         ...++  ........|.|.++..+|+|.|.|.
T Consensus        11 ~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyCa   90 (108)
T d2fx7l1          11 QSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYCQ   90 (108)
T ss_dssp             EEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEeee
Confidence            678899999999987654333368999754322110  0         01111  2234456899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        91 ~~~   93 (108)
T d2fx7l1          91 QYG   93 (108)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            753

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.16  E-value=1.1e-05  Score=49.82  Aligned_cols=69  Identities=20%  Similarity=0.358  Sum_probs=47.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|...+.... .+.||+...+....  +         ...++  ...+....|.|.++..+|++.|.|.
T Consensus        13 l~~~~G~svtL~C~~s~~~~~-~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA   91 (109)
T d1bwwa_          13 LSASVGDRVTITCQASQDIIK-YLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQ   91 (109)
T ss_dssp             EEECTTCCEEEEEEESSCCTT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCC-cceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEe
Confidence            668899999999998765444 68999743322211  0         01112  2234456899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        92 ~~~   94 (109)
T d1bwwa_          92 QYQ   94 (109)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            764

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.15  E-value=5.7e-06  Score=51.71  Aligned_cols=70  Identities=20%  Similarity=0.286  Sum_probs=46.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCc--cc-c----------------ccCCceEE----eCCceeEEEEecCC
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSG--ET-L----------------DVGSERFS----SGSRGSMLRYTPVT  125 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~--~~-~----------------~~~~~~~~----~~~~~~~l~i~~~~  125 (261)
                      +.+.+|++++|.|.+.+......+.|++-..+  .. +                .....++.    .......|.|.++.
T Consensus         8 ~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~   87 (115)
T d2atpb1           8 LLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNVK   87 (115)
T ss_dssp             EEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSCC
T ss_pred             EEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeecccC
Confidence            66889999999999886544337999864211  10 0                00111211    12335579999999


Q ss_pred             CCcCeEEEEEEEc
Q psy11549        126 ELDYGTLSCAAQN  138 (261)
Q Consensus       126 ~~d~g~y~C~~~~  138 (261)
                      .+|+|.|.|.+..
T Consensus        88 ~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          88 PEDSDFYFCATVG  100 (115)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             CCCCcEEEEeEcC
Confidence            9999999998754

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=4.5e-06  Score=50.60  Aligned_cols=76  Identities=12%  Similarity=-0.012  Sum_probs=50.7

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EE---ecCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCcee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NL---TNLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVI  243 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~  243 (261)
                      ..|+.|+|.|...   .....|.++.... ...... ..   .......|.|.+++..++|.|  +|...|+.+++++|.
T Consensus        19 ~~G~~VTL~C~~~---~~~~~f~l~k~g~-~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y--~C~y~~~~~~S~~Sd   92 (99)
T d1ucta1          19 PLDGSVKIQCQAI---REAYLTQLMIIKN-STYREIGRRLKFWNETDPEFVIDHMDANKAGRY--QCQYRIGHYRFRYSD   92 (99)
T ss_dssp             ETTCCEEEEECCC---TTCSEEEEEEEET-TEEEECSEECC----CCCEEEECSCCGGGCEEE--EEEEEETTTEEEECC
T ss_pred             eCCCeEEEEEcCC---CCCcEEEEEECCC-cCceeccccccCCCCceEEEEecCCCHHHCceE--EEEEECCCcccCCCC
Confidence            3599999999862   2223455554332 221111 11   122346799999999999999  888899999999999


Q ss_pred             eeeeee
Q psy11549        244 WDDFSM  249 (261)
Q Consensus       244 ~~~~~~  249 (261)
                      ++++..
T Consensus        93 pl~L~V   98 (99)
T d1ucta1          93 TLELVV   98 (99)
T ss_dssp             CEEEEE
T ss_pred             CEEEEe
Confidence            988753

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.15  E-value=1.7e-05  Score=48.42  Aligned_cols=68  Identities=22%  Similarity=0.350  Sum_probs=45.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|...... . .+.||+-..+....  .         ...++  ...+....|.|.++..+|++.|.|.
T Consensus        10 l~~~~G~~vtl~C~~s~~~-~-~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   87 (104)
T d1yqvl1          10 MSASPGEKVTMTCSASSSV-N-YMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQ   87 (104)
T ss_dssp             EEECTTCCEEEEEEESSCC-S-CCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCC-C-ccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEE
Confidence            6788999999999865432 2 58999753321111  0         00111  2234566899999999999999997


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      ...
T Consensus        88 ~~~   90 (104)
T d1yqvl1          88 QWG   90 (104)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            643

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=5.8e-06  Score=51.09  Aligned_cols=72  Identities=17%  Similarity=0.144  Sum_probs=42.3

Q ss_pred             eeCCCcEEEEEEEeeCCCC--ceeEEEEcCCccccccCCceEEe---CCceeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         71 ASRSESVDIHCAVEADPPA--RSFKWKFNNSGETLDVGSERFSS---GSRGSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      +..|+.++|.|.+.+..++  ..+.|++++..............   ....+.|.+.....++...|+|+|.+..+.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            5699999999999875442  36899987642111000000000   111235666555555556999999987544

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.11  E-value=7.5e-06  Score=50.83  Aligned_cols=70  Identities=13%  Similarity=0.168  Sum_probs=46.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEE--eCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFS--SGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~--~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|...+......+.||+-..+..+.           ....++.  .+.....|.|.++..+|+|.|.|.
T Consensus         8 ~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCa   87 (112)
T d1kgcd1           8 MESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYCI   87 (112)
T ss_dssp             EEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEeee
Confidence            667899999999998755543259999843322211           0011122  233455799999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        88 ~~~   90 (112)
T d1kgcd1          88 LPL   90 (112)
T ss_dssp             CCC
T ss_pred             Eec
Confidence            754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.10  E-value=9.9e-06  Score=50.34  Aligned_cols=70  Identities=26%  Similarity=0.348  Sum_probs=46.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc----cCCc-------e--E-EeCCceeEEEEecCCCCcCeEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD----VGSE-------R--F-SSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~-------~--~-~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +.+.+|++++|.|...... . .+.||+-..+....    ....       .  + ........|.|.++..+|+|.|.|
T Consensus        11 ~~v~~G~~vtl~C~~~~~~-~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (113)
T d1h5ba_          11 LSLHEGTDSALRCNFTTTM-R-SVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC   88 (113)
T ss_dssp             EEEETTCCEEEEEEESSCC-S-EEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEE
T ss_pred             EEEcCCCCEEEEEEEecCC-c-cceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEE
Confidence            6678999999999976532 3 69999843221111    0000       0  0 112345579999999999999999


Q ss_pred             EEEcCC
Q psy11549        135 AAQNAI  140 (261)
Q Consensus       135 ~~~~~~  140 (261)
                      .+....
T Consensus        89 a~~~~~   94 (113)
T d1h5ba_          89 AAEASS   94 (113)
T ss_dssp             EEECSS
T ss_pred             EecCCC
Confidence            987543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=2.6e-06  Score=54.04  Aligned_cols=36  Identities=25%  Similarity=0.470  Sum_probs=30.4

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVK   56 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~   56 (261)
                      .+|+|.+++.+|+|.|.|.+.+..+.. +..+.|.|.
T Consensus        88 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~  123 (124)
T d1eaja_          88 ASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVVL  123 (124)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEEcccEEccCEEEEEEEEECCCeE-EeEEEEEEE
Confidence            489999999999999999998887655 666777774

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=1.6e-05  Score=49.44  Aligned_cols=69  Identities=20%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-------------CCceE--EeCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-------------GSERF--SSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-------------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+..|++++|.|.......  .+.||+-..+.....             ....+  ........|.|.++..+|+|.|.
T Consensus        10 ~~~~~G~svtl~C~~s~~~~--~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (115)
T d1ogad1          10 LSIQEGENLTVYCNSSSVFS--SLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYL   87 (115)
T ss_dssp             EEEETTCCEEEEEECSSCCS--CEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             EEECCCCCEEEEEEECCCCc--eEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEc
Confidence            67889999999998765432  699997433221110             00111  22345678999999999999999


Q ss_pred             EEEEcC
Q psy11549        134 CAAQNA  139 (261)
Q Consensus       134 C~~~~~  139 (261)
                      |.+...
T Consensus        88 Ca~~~~   93 (115)
T d1ogad1          88 CAGAGS   93 (115)
T ss_dssp             EEEECT
T ss_pred             ccccCC
Confidence            988754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.08  E-value=8.9e-06  Score=50.04  Aligned_cols=70  Identities=20%  Similarity=0.248  Sum_probs=47.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCce--EEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSER--FSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+.+|++++|.|........ .+.||+...+....  +         ...+  .........|.|.++..+|++.|.|.
T Consensus        10 l~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1          10 VSVAPGQTARITCGGNNIGSR-SVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEECTTSCEEEEEECTTGGGS-CCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCCCc-ceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence            677899999999986543333 69999743322111  0         0111  22344566899999999999999999


Q ss_pred             EEcC
Q psy11549        136 AQNA  139 (261)
Q Consensus       136 ~~~~  139 (261)
                      +...
T Consensus        89 ~~~~   92 (109)
T d1w72l1          89 VWDS   92 (109)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            8653

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.07  E-value=1.3e-05  Score=49.58  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=45.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---------------cCCceE--EeCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---------------VGSERF--SSGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~~~--~~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+..|++++|.|..... .. .+.||+-..+....               ......  ........|.|.++..+|+|.
T Consensus        11 ~~~~~G~~vtl~C~~s~~-~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (110)
T d2aq2a1          11 KVAVTGEKVTLSCQQTNN-HN-NMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSV   88 (110)
T ss_dssp             EEECTTCCEEEEEEESSC-CS-EEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEcCCCCEEEEEEECCC-cC-cEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEE
Confidence            667899999999987653 23 79999843321110               000111  123345689999999999999


Q ss_pred             EEEEEEc
Q psy11549        132 LSCAAQN  138 (261)
Q Consensus       132 y~C~~~~  138 (261)
                      |.|.+..
T Consensus        89 YyCa~~~   95 (110)
T d2aq2a1          89 YFCASGG   95 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeCC
Confidence            9998764

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.06  E-value=6.5e-06  Score=50.60  Aligned_cols=69  Identities=22%  Similarity=0.342  Sum_probs=46.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+...+....  +         ...++  ........|.|.++..+|+|.|.|.
T Consensus        11 ~~~~~G~~vtl~C~~s~~~~~-~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d3cx5k1          11 LAASLGDRVTISCRASQDINN-FLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQ   89 (107)
T ss_dssp             CCBCSSSCCEEEEEESSCCTT-CEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEE
T ss_pred             EEECCCCCEEEEEEcCCCcCC-CeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEee
Confidence            456799999999987665444 69999754332211  0         00111  2334466899999999999999997


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        90 ~~~   92 (107)
T d3cx5k1          90 HHI   92 (107)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.05  E-value=2.2e-05  Score=48.64  Aligned_cols=70  Identities=24%  Similarity=0.354  Sum_probs=47.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc----cC-------CceE--EeCCceeEEEEecCCCCcCeEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD----VG-------SERF--SSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~----~~-------~~~~--~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +.+..|++++|.|.+.+... ...+.||+...+....    ..       ..++  ........|.|.++..+|++.|.|
T Consensus        10 ~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~YyC   89 (114)
T d2rhea_          10 ASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYYC   89 (114)
T ss_dssp             EEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             EEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEEE
Confidence            67789999999999876542 2269999754332211    00       0111  223446689999999999999999


Q ss_pred             EEEc
Q psy11549        135 AAQN  138 (261)
Q Consensus       135 ~~~~  138 (261)
                      .+..
T Consensus        90 A~~~   93 (114)
T d2rhea_          90 AAWN   93 (114)
T ss_dssp             EEEE
T ss_pred             eecC
Confidence            9864

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.2e-05  Score=49.46  Aligned_cols=78  Identities=10%  Similarity=0.030  Sum_probs=48.4

Q ss_pred             eEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc----c-eeE--EEecC--------CCCcEEEcCCCCCCcc-EEE
Q psy11549        164 SVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDL----N-LLV--NLTNL--------DTPAFTLEDLGLDGTV-LMR  227 (261)
Q Consensus       164 ~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~----~-~~~--~~~~~--------~~~~~~i~~~~l~~~~-~Y~  227 (261)
                      .+....|+.+.|.|.+  . +.|...+.|+++....    . ...  .....        ....|.|.+++.+|.| .| 
T Consensus        11 ~i~v~~G~~v~l~C~v--~-g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y-   86 (107)
T d1iray3          11 TMEVDLGSQIQLICNV--T-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPF-   86 (107)
T ss_dssp             EEECCTTCCEEEEEEE--E-ECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCE-
T ss_pred             EEEEeCCCEEEEEEEe--c-cCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEE-
Confidence            4555679999999997  3 3343334444432111    0 011  11110        1246899998899988 59 


Q ss_pred             EEEEEEcCCCcCCceeeee
Q psy11549        228 VVISGVNAKGRSLPVIWDD  246 (261)
Q Consensus       228 ~~~~a~N~~G~~~~s~~~~  246 (261)
                       .|.|.|.+|..+....+.
T Consensus        87 -~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          87 -TCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             -EEEEECSSCEEEEEEEEE
T ss_pred             -EEEEEeCCCeEEEEEEEE
Confidence             999999999876665554

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.8e-06  Score=51.81  Aligned_cols=34  Identities=18%  Similarity=0.266  Sum_probs=27.4

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      +++|+|.+++.+|+|.|+|.+.|..+..   .+.|.|
T Consensus        59 ~~sL~I~~l~~~DsG~Y~c~~~n~~~t~---~~~l~V   92 (93)
T d1ccza1          59 SGSLTIYNLTSSDEDEYEMESPNITDTM---KFFLYV   92 (93)
T ss_dssp             TCCEEECSCCGGGCEEEEEECTTCCSCE---EEEEEE
T ss_pred             eeEEEEEecChhhCEEEEEEEECCCcEE---EEEEEE
Confidence            4689999999999999999997765433   466665

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.04  E-value=5.2e-05  Score=46.92  Aligned_cols=70  Identities=19%  Similarity=0.297  Sum_probs=45.6

Q ss_pred             EEeeCCCcEEEEEEEeeCC-----CCceeEEEEcCCccccc--c---------CCce--EEeCCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADP-----PARSFKWKFNNSGETLD--V---------GSER--FSSGSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-----~~~~~~W~~~~~~~~~~--~---------~~~~--~~~~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+.+|++++|.|...+..     ....+.||+...+....  .         ...+  ...+.....|.|.++..+|+|
T Consensus        11 v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Dsa   90 (113)
T d1q9ra1          11 LAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDLA   90 (113)
T ss_dssp             EEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCCe
Confidence            6678999999999876421     11149999753321110  0         0111  123445668999999999999


Q ss_pred             EEEEEEEc
Q psy11549        131 TLSCAAQN  138 (261)
Q Consensus       131 ~y~C~~~~  138 (261)
                      .|.|.+..
T Consensus        91 ~YyCA~~~   98 (113)
T d1q9ra1          91 VYYCKQSY   98 (113)
T ss_dssp             EEEEEECS
T ss_pred             EEEecccC
Confidence            99998654

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=2e-05  Score=49.30  Aligned_cols=70  Identities=13%  Similarity=0.084  Sum_probs=46.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCC--ceeEEEEcCCcccccc-------C------Cc---eEEeCCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADPPA--RSFKWKFNNSGETLDV-------G------SE---RFSSGSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~-------~------~~---~~~~~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+..|+.++|.|........  ..+.|++...+.....       .      ..   ..........|.|.++..+|+|
T Consensus         9 ~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (117)
T d1dqta_           9 VLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTG   88 (117)
T ss_dssp             EECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCE
Confidence            567799999999998654332  1478997433222110       0      00   1123445668999999999999


Q ss_pred             EEEEEEEc
Q psy11549        131 TLSCAAQN  138 (261)
Q Consensus       131 ~y~C~~~~  138 (261)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (117)
T d1dqta_          89 LYLCKVEL   96 (117)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEec
Confidence            99998753

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=6.9e-06  Score=49.31  Aligned_cols=65  Identities=8%  Similarity=0.075  Sum_probs=43.4

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      .+..|++++|.|....  ....+.+++++.........  .......+.|.|.++...|+|.|+|....
T Consensus        14 ~V~~G~~VTL~C~~~~--~~~~f~L~keg~~~~~~~~~--~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1          14 VITQGSPVTLRCQGGQ--ETQEYRLYREKKTAPWITRI--PQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             EEETTCCEEEEEECCT--TCCCEEEEESSSCCHHHHTS--CHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCcEEEEEeCCC--CCCEEEEEECCCCcccEEEc--cCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            3679999999999643  23368888876432211111  01112345799999999999999998753

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.03  E-value=2.8e-05  Score=48.15  Aligned_cols=71  Identities=17%  Similarity=0.267  Sum_probs=47.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCC--CceeEEEEcCCccccc--c---------CCce--EEeCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPP--ARSFKWKFNNSGETLD--V---------GSER--FSSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~--~---------~~~~--~~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+..|++++|.|...+...  ...+.||+...+....  .         ...+  .........|.|.++..+|++.|.
T Consensus        10 ~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   89 (112)
T d1lgva1          10 VSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADYY   89 (112)
T ss_dssp             EEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEEE
Confidence            67889999999999775422  2258999743322211  0         0011  123345678999999999999999


Q ss_pred             EEEEcC
Q psy11549        134 CAAQNA  139 (261)
Q Consensus       134 C~~~~~  139 (261)
                      |.+...
T Consensus        90 Ca~~~~   95 (112)
T d1lgva1          90 CSSYDG   95 (112)
T ss_dssp             EEEECS
T ss_pred             EeeecC
Confidence            988754

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.5e-06  Score=50.60  Aligned_cols=76  Identities=13%  Similarity=0.060  Sum_probs=50.1

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEe--cCCCCcEEEcCCCCCCccEEEEEEEEEcCCCcCCceeee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLT--NLDTPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPVIWD  245 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s~~~  245 (261)
                      ..|..|+|.|..   ......|.++ +............  ......|.|.++...++|.|  +|...+..+++++|..+
T Consensus        16 ~~G~~VTL~C~~---~~~~~~f~L~-k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y--~C~y~~~~~~S~~Sd~l   89 (95)
T d1olla1          16 PKEKQVTICCQG---NYGAVEYQLH-FEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY--SCIYRVGELWSEPSNLL   89 (95)
T ss_dssp             ETTCCEEEEEEC---CTTCCEEEEE-ETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEE--EEEEEETTEECCCCCCE
T ss_pred             cCCCcEEEEEec---CCCccEEEEE-ECCCCcceeEEccCCCccEEEEEEeeeecCCCceE--EEEeCCCCCccCCCCCE
Confidence            359999999995   2223445443 3322221111111  11224799999999999999  88888999999999999


Q ss_pred             eeee
Q psy11549        246 DFSM  249 (261)
Q Consensus       246 ~~~~  249 (261)
                      ++..
T Consensus        90 eL~V   93 (95)
T d1olla1          90 DLVV   93 (95)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8654

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.01  E-value=2.8e-05  Score=48.02  Aligned_cols=71  Identities=20%  Similarity=0.296  Sum_probs=47.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc----c-------CCceE--EeCCceeEEEEecCCCCcCeEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD----V-------GSERF--SSGSRGSMLRYTPVTELDYGTLSC  134 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~----~-------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C  134 (261)
                      +.+.+|++++|.|....... ...+.||+-..+....    .       ...++  ..++....|.|.++..+|+|.|.|
T Consensus        10 ~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~YyC   89 (111)
T d1rzfl1          10 VSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYC   89 (111)
T ss_dssp             EEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             eEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceEE
Confidence            77889999999998765432 2259999743221111    0       00111  234456789999999999999999


Q ss_pred             EEEcC
Q psy11549        135 AAQNA  139 (261)
Q Consensus       135 ~~~~~  139 (261)
                      .+...
T Consensus        90 A~~~~   94 (111)
T d1rzfl1          90 GTWDS   94 (111)
T ss_dssp             EEEET
T ss_pred             eecCC
Confidence            87643

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.98  E-value=1.7e-05  Score=48.96  Aligned_cols=70  Identities=24%  Similarity=0.362  Sum_probs=47.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-----------CCceEE----eCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-----------GSERFS----SGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-----------~~~~~~----~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+.+|++++|.|........ .+.||+-..+.....           ...++.    .......|.|.++..+|+|.|.
T Consensus        10 ~~~~~G~~vtl~C~~~~~~~~-~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   88 (110)
T d1ac6a_          10 VALSEEDFLTIHCNYSASGYP-ALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYY   88 (110)
T ss_dssp             EEEETTEEEEECEEEECSSCC-EEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEE
T ss_pred             EEECCCCCEEEEEEecCCCCc-ceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccc
Confidence            678899999999987765444 699997433221110           011121    1234568999999999999999


Q ss_pred             EEEEcC
Q psy11549        134 CAAQNA  139 (261)
Q Consensus       134 C~~~~~  139 (261)
                      |.+...
T Consensus        89 CA~~~~   94 (110)
T d1ac6a_          89 CALSGG   94 (110)
T ss_dssp             EEEEET
T ss_pred             eeecCC
Confidence            987653

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=8.9e-06  Score=51.30  Aligned_cols=71  Identities=13%  Similarity=0.151  Sum_probs=45.1

Q ss_pred             EEeeCCCcEEEEEEEeeCC------CCceeEEEEcCCccccc--------------cCCceEEe----CCceeEEEEecC
Q psy11549         69 VGASRSESVDIHCAVEADP------PARSFKWKFNNSGETLD--------------VGSERFSS----GSRGSMLRYTPV  124 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~------~~~~~~W~~~~~~~~~~--------------~~~~~~~~----~~~~~~l~i~~~  124 (261)
                      +.+.+|+.+.|+|......      ....+.|++........              ....++..    ......|.|.++
T Consensus        11 vtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   90 (121)
T d2g5ra1          11 VTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDA   90 (121)
T ss_dssp             EEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             EEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCC
Confidence            7788999999999885221      12357888753321110              00112222    223557999999


Q ss_pred             CCCcCeEEEEEEEcC
Q psy11549        125 TELDYGTLSCAAQNA  139 (261)
Q Consensus       125 ~~~d~g~y~C~~~~~  139 (261)
                      ..+|+|.|.|.+...
T Consensus        91 ~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          91 RMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChHHCEEEEEEEEeC
Confidence            999999999999764

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=9.1e-06  Score=50.55  Aligned_cols=72  Identities=14%  Similarity=0.235  Sum_probs=46.2

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----c----------CCceEEe----CCceeEEEEecCCCCcC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----V----------GSERFSS----GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----~----------~~~~~~~----~~~~~~l~i~~~~~~d~  129 (261)
                      ..+.+|++++|.|...+.. ....+.|++...+....    .          ...++..    ......|+|.++..+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            6677999999999876432 22268899743321110    0          0012221    23345799999999999


Q ss_pred             eEEEEEEEcCC
Q psy11549        130 GTLSCAAQNAI  140 (261)
Q Consensus       130 g~y~C~~~~~~  140 (261)
                      |.|.|.+....
T Consensus        89 g~Y~Cav~~~~   99 (113)
T d1smoa_          89 GLYQCVIYQPP   99 (113)
T ss_dssp             EEEEEEECCTT
T ss_pred             ceEEEEEECCC
Confidence            99999986543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.98  E-value=3.1e-05  Score=47.82  Aligned_cols=70  Identities=19%  Similarity=0.314  Sum_probs=46.1

Q ss_pred             EEeeCCCcEEEEEEEeeCC---CCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADP---PARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+..|++++|.|......   ....+.||+...+....  +         ...++  ........|.|.++..+|+|.|
T Consensus        11 l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   90 (111)
T d1j05a_          11 LAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVATY   90 (111)
T ss_dssp             EECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCccE
Confidence            5677999999999875422   12249999753322111  0         00111  2344567899999999999999


Q ss_pred             EEEEEc
Q psy11549        133 SCAAQN  138 (261)
Q Consensus       133 ~C~~~~  138 (261)
                      .|.+..
T Consensus        91 yCa~~~   96 (111)
T d1j05a_          91 YCQQTN   96 (111)
T ss_dssp             EEEECS
T ss_pred             EEeecC
Confidence            998764

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=1.9e-05  Score=49.32  Aligned_cols=69  Identities=22%  Similarity=0.329  Sum_probs=46.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+...+....  .         ...++  ........|.|.++..+|+|.|.|.
T Consensus        11 v~~~~G~svtl~C~~s~~~~~-~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa   89 (119)
T d1f3rb2          11 LSASVGDRVTLSCKGSQNINN-YLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCY   89 (119)
T ss_dssp             ECCCTTCCEEEEEECSSCCBT-CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEE
T ss_pred             EEECCCCCEEEEEEeCCCCcc-eeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEee
Confidence            667899999999987654333 69999753321111  0         01112  2233456899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        90 ~~~   92 (119)
T d1f3rb2          90 QYN   92 (119)
T ss_dssp             EES
T ss_pred             ccC
Confidence            764

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.97  E-value=1.6e-05  Score=49.16  Aligned_cols=68  Identities=21%  Similarity=0.389  Sum_probs=44.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---------------cCCceEEe---CCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---------------VGSERFSS---GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~~~~~---~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+..|++++|.|...... . .+.||+-..+....               ....++..   ......|.|.++..+|+|
T Consensus         9 ~~~~~G~svtl~C~~~~~~-~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa   86 (111)
T d2esve1           9 SVIEKGQTVTLRCDPISGH-D-NLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSG   86 (111)
T ss_dssp             EEEETTCCEEEEEECCTTC-S-EEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEECCCC-c-eEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCc
Confidence            6678999999999854332 3 79999743221111               01112221   223457999999999999


Q ss_pred             EEEEEEEc
Q psy11549        131 TLSCAAQN  138 (261)
Q Consensus       131 ~y~C~~~~  138 (261)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (111)
T d2esve1          87 VYFCASSQ   94 (111)
T ss_dssp             EEEEEEES
T ss_pred             eEEEeeeC
Confidence            99998764

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=9.2e-06  Score=47.09  Aligned_cols=55  Identities=16%  Similarity=0.290  Sum_probs=42.5

Q ss_pred             CCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEE
Q psy11549          2 AGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVK   56 (261)
Q Consensus         2 ~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~   56 (261)
                      |.|.+.......+.+..+|+|+|.++.++|+|.|...+.+..|.. ...++.|.|.
T Consensus        45 Kk~~~~f~~~~~y~i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          45 RKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             CGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             cccCCCCCCCceEEEccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            344444333456889999999999999999999999999999985 3456666664

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.96  E-value=5.3e-05  Score=46.78  Aligned_cols=69  Identities=25%  Similarity=0.413  Sum_probs=45.9

Q ss_pred             EEeeCCCcEEEEEEEeeCC----CCceeEEEEcCCcccccc-----------CCceE--EeCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADP----PARSFKWKFNNSGETLDV-----------GSERF--SSGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~----~~~~~~W~~~~~~~~~~~-----------~~~~~--~~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|++++|.|...+..    ....+.||+...+.....           ...++  ........|.|.++..+|++.
T Consensus        11 lsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsAv   90 (112)
T d1mjul1          11 VPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVGV   90 (112)
T ss_dssp             EEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCce
Confidence            6678999999999876531    222689997543322110           01111  334456689999999999999


Q ss_pred             EEEEEE
Q psy11549        132 LSCAAQ  137 (261)
Q Consensus       132 y~C~~~  137 (261)
                      |.|...
T Consensus        91 YyCa~~   96 (112)
T d1mjul1          91 YYCLQH   96 (112)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999643

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3.1e-05  Score=46.58  Aligned_cols=69  Identities=16%  Similarity=0.205  Sum_probs=42.6

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc-CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV-GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+..|++++|.|.....  ...+.+++++....... ........+....|.|.++...|+|.|+|......
T Consensus        14 ~v~~G~~VTL~C~~~~~--~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~~   83 (98)
T d1ugna2          14 VVNSGGNVTLQCDSQVA--FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSN   83 (98)
T ss_dssp             EEETTCCEEEEEECSSC--CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTT
T ss_pred             ccCCCCcEEEEeCCCCC--CCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcCC
Confidence            36799999999986543  33788888764322111 01111123345679999999999999999986543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.95  E-value=2.5e-05  Score=48.03  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=46.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCC--CceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPP--ARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+..|++++|.|.......  ...+.||+-..+....  +         ...++  ........|.|.++..+|+|.|.
T Consensus        10 lsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Yy   89 (110)
T d1oaql_          10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYF   89 (110)
T ss_dssp             EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             EEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeEE
Confidence            56789999999999875432  2248899733221111  0         01122  23445678999999999999999


Q ss_pred             EEEEc
Q psy11549        134 CAAQN  138 (261)
Q Consensus       134 C~~~~  138 (261)
                      |.+..
T Consensus        90 Ca~~~   94 (110)
T d1oaql_          90 CALWY   94 (110)
T ss_dssp             EEEEE
T ss_pred             EEccc
Confidence            99764

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.95  E-value=2.1e-05  Score=48.76  Aligned_cols=68  Identities=22%  Similarity=0.315  Sum_probs=44.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---------------cCCceEE---eCCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---------------VGSERFS---SGSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~~~~---~~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+.+|++++|.|..... .. .+.||+-..+....               ....++.   .......|.|.++.++|+|
T Consensus         9 ~~~~~G~svtl~C~~~~~-~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (112)
T d1kgce1           9 KVAKRGQDVALRCDPISG-HV-SLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSA   86 (112)
T ss_dssp             EEEETTCCEEEEEECCTT-CC-EEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEECCC-CC-EEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCE
Confidence            567899999999985433 23 79999743221110               0111111   1223457999999999999


Q ss_pred             EEEEEEEc
Q psy11549        131 TLSCAAQN  138 (261)
Q Consensus       131 ~y~C~~~~  138 (261)
                      .|.|.+..
T Consensus        87 ~YyCa~~~   94 (112)
T d1kgce1          87 VYLCASSL   94 (112)
T ss_dssp             EEEEEEES
T ss_pred             EEEEeeeC
Confidence            99999864

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.94  E-value=2.2e-05  Score=48.78  Aligned_cols=69  Identities=16%  Similarity=0.277  Sum_probs=45.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc------C--------CceEE---eCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV------G--------SERFS---SGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~------~--------~~~~~---~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|++++|.|..... .. .+.||+-..+.....      .        ..++.   .......|.|.++..+|++.
T Consensus         9 ~~~~~G~svtl~C~~s~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~   86 (114)
T d1ogae1           9 LFRKEGQNVTLSCEQNLN-HD-AMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF   86 (114)
T ss_dssp             EEEETTCCEEECCEECSC-CS-EEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred             EEEcCCCCEEEEEEEecC-CC-cEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCcee
Confidence            668899999999997532 33 799997443221110      0        00111   12335579999999999999


Q ss_pred             EEEEEEcC
Q psy11549        132 LSCAAQNA  139 (261)
Q Consensus       132 y~C~~~~~  139 (261)
                      |.|.+...
T Consensus        87 YyCa~~~~   94 (114)
T d1ogae1          87 YLCASSSR   94 (114)
T ss_dssp             EEEEEESS
T ss_pred             EEEeeccC
Confidence            99987643

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.1e-05  Score=48.46  Aligned_cols=70  Identities=17%  Similarity=0.174  Sum_probs=46.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCCC--ceeEEEEcCCcccccc-------C------Cce---EEeCCceeEEEEecCCCCcCe
Q psy11549         69 VGASRSESVDIHCAVEADPPA--RSFKWKFNNSGETLDV-------G------SER---FSSGSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~-------~------~~~---~~~~~~~~~l~i~~~~~~d~g  130 (261)
                      +.+..|+.++|.|........  ..+.|++...+.....       .      ...   .........|.|.++..+|+|
T Consensus         9 ~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (118)
T d1i8lc_           9 VLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTG   88 (118)
T ss_dssp             EECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCE
T ss_pred             EEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCE
Confidence            567799999999998654432  2488997543322110       0      000   122444668999999999999


Q ss_pred             EEEEEEEc
Q psy11549        131 TLSCAAQN  138 (261)
Q Consensus       131 ~y~C~~~~  138 (261)
                      .|.|.+..
T Consensus        89 ~YyCa~~~   96 (118)
T d1i8lc_          89 LYICKVEL   96 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEeEec
Confidence            99998764

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.93  E-value=2.8e-05  Score=48.21  Aligned_cols=69  Identities=19%  Similarity=0.246  Sum_probs=45.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEc--CCcccccc------------CCceE---EeCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFN--NSGETLDV------------GSERF---SSGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~~~------------~~~~~---~~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+..|++++|.|...... . .+.||+-  +....+-+            ...++   ........|.|.++.++|++.
T Consensus         9 ~~~~~G~svtl~C~~~~~~-~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   86 (113)
T d2ntsp1           9 LIKTRGQQVTLSCSPISGH-R-SVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSAL   86 (113)
T ss_dssp             EEEETTCCEEEEEECSTTC-C-EEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECCCC-C-EEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccccee
Confidence            6678999999999865433 3 7999973  22211100            00111   122335689999999999999


Q ss_pred             EEEEEEcC
Q psy11549        132 LSCAAQNA  139 (261)
Q Consensus       132 y~C~~~~~  139 (261)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (113)
T d2ntsp1          87 YLCASSLA   94 (113)
T ss_dssp             EEEEEESS
T ss_pred             eeeeeeCC
Confidence            99987653

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=1.6e-05  Score=49.71  Aligned_cols=72  Identities=15%  Similarity=0.107  Sum_probs=46.0

Q ss_pred             EEeeCCCcEEEEEEEeeCC-----CCceeEEEEcCCccccc------------cCCceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-----PARSFKWKFNNSGETLD------------VGSERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-----~~~~~~W~~~~~~~~~~------------~~~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +.+.+|+.+.|+|.+....     ....+.|++...+....            ....++..    .....+|.|.++..+
T Consensus        10 v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   89 (118)
T d1qfoa_          10 VQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKPE   89 (118)
T ss_dssp             EEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             EEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCChh
Confidence            6788999999999986321     12346677654321110            01112222    234557999999999


Q ss_pred             cCeEEEEEEEcCC
Q psy11549        128 DYGTLSCAAQNAI  140 (261)
Q Consensus       128 d~g~y~C~~~~~~  140 (261)
                      |+|.|.|++....
T Consensus        90 DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          90 DSGTYNFRFEISD  102 (118)
T ss_dssp             GCEEEEEEEECC-
T ss_pred             HCEEEEEEEEeCC
Confidence            9999999997653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.91  E-value=6.6e-05  Score=47.14  Aligned_cols=70  Identities=24%  Similarity=0.370  Sum_probs=46.5

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccccc----------------cCCceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGETLD----------------VGSERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~----------------~~~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +.+..|++++|.|.+.+.. ....+.||+-..+..+.                ....++..    ......|.|.++..+
T Consensus        11 ~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~~   90 (123)
T d1hxmb1          11 STKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQ   90 (123)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGG
T ss_pred             EEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecccccccc
Confidence            6677899999999998754 22268999743221110                01123322    233557999999999


Q ss_pred             cCeEEEEEEEc
Q psy11549        128 DYGTLSCAAQN  138 (261)
Q Consensus       128 d~g~y~C~~~~  138 (261)
                      |++.|.|.+..
T Consensus        91 Dsa~YyCA~~~  101 (123)
T d1hxmb1          91 DIATYYCALWE  101 (123)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCcEEEEeeeC
Confidence            99999998754

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.89  E-value=7.6e-05  Score=45.95  Aligned_cols=71  Identities=21%  Similarity=0.360  Sum_probs=45.9

Q ss_pred             EEeeCCCcEEEEEEEeeCC---CCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADP---PARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~---~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+..|++++|.|......   ....+.||+...+....  +         ...++  ........|.|.++..+|++.|
T Consensus        11 ~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~Y   90 (111)
T d2gsia1          11 LAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAATY   90 (111)
T ss_dssp             EEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCceE
Confidence            6678999999999875421   12248999743221110  0         01122  2233466899999999999999


Q ss_pred             EEEEEcC
Q psy11549        133 SCAAQNA  139 (261)
Q Consensus       133 ~C~~~~~  139 (261)
                      .|.+...
T Consensus        91 yCa~~~~   97 (111)
T d2gsia1          91 YCSHIRE   97 (111)
T ss_dssp             EEEECSS
T ss_pred             EEEECCC
Confidence            9986543

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.87  E-value=2.7e-05  Score=48.26  Aligned_cols=68  Identities=15%  Similarity=0.210  Sum_probs=44.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc--------------CCceE---EeCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV--------------GSERF---SSGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--------------~~~~~---~~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|++++|.|...... . .+.||+-..+..+..              ...++   ........|.|.++..+|+|.
T Consensus        11 ~~~~~G~~v~l~C~~~~~~-~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (113)
T d1nfdb1          11 IIKEKGGRSVLTCIPISGH-S-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM   88 (113)
T ss_dssp             EEEETTCCCEEEEECCTTC-C-EEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEE
T ss_pred             EEEeCCCCEEEEEEeCCCC-C-EEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCcee
Confidence            5678999999999864432 3 799997543222110              00111   122334579999999999999


Q ss_pred             EEEEEEc
Q psy11549        132 LSCAAQN  138 (261)
Q Consensus       132 y~C~~~~  138 (261)
                      |.|.+..
T Consensus        89 YyCa~~~   95 (113)
T d1nfdb1          89 YFCASSL   95 (113)
T ss_dssp             ECEEEES
T ss_pred             EEEEeec
Confidence            9998764

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.87  E-value=9.4e-05  Score=45.69  Aligned_cols=70  Identities=19%  Similarity=0.367  Sum_probs=46.2

Q ss_pred             EEeeCCCcEEEEEEEeeCC----CCceeEEEEcCCcccccc-----------CCceE--EeCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADP----PARSFKWKFNNSGETLDV-----------GSERF--SSGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~----~~~~~~W~~~~~~~~~~~-----------~~~~~--~~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|++++|.|......    ....+.||+-..+.....           ...++  ........|.|.++..+|++.
T Consensus        12 ~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   91 (113)
T d1n4xl_          12 LPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGI   91 (113)
T ss_dssp             EEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCEE
Confidence            6688999999999976432    112589997543222110           01112  234456689999999999999


Q ss_pred             EEEEEEc
Q psy11549        132 LSCAAQN  138 (261)
Q Consensus       132 y~C~~~~  138 (261)
                      |.|....
T Consensus        92 YyCa~~~   98 (113)
T d1n4xl_          92 YYCFQGS   98 (113)
T ss_dssp             EEEEECS
T ss_pred             EEEEECC
Confidence            9997543

>d1f6fb1 b.1.2.1 (B:5-100) Prolactin receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Prolactin receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.87  E-value=9.8e-05  Score=44.10  Aligned_cols=83  Identities=16%  Similarity=0.223  Sum_probs=55.1

Q ss_pred             CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccEEEEEEEEEcCCC
Q psy11549        160 PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVLMRVVISGVNAKG  237 (261)
Q Consensus       160 p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N~~G  237 (261)
                      |+++.-....-..+..+|.++.+.+.+..|.+.++.........  .........+.+..-.+.....|.|+|.|.|++|
T Consensus         3 P~~~sC~s~~~~~~~C~W~~G~~t~L~T~Y~l~~~~~~~~~~~eCp~y~~~~~~~C~f~~~~~~~~~~y~i~V~a~N~LG   82 (96)
T d1f6fb1           3 PEIHKCRSPDKETFTCWWNPGTDGGLPTNYSLTYSKEGEKTTYECPDYKTSGPNSCFFSKQYTSIWKIYIITVNATNQMG   82 (96)
T ss_dssp             CEEEEEEBSSSSCEEEEEECCCCTTSCCEEEEEEEETTEEEEEECSCSSTTCTTEEEECTTTCCSSCEEEEEEEEEETTE
T ss_pred             CeEeEEEeCCCCEEEEEeeCCCcCCcCceEEEEEEecCCCccccCCcccCCCceeEEECCccCccceEEEEEEEEEcCCC
Confidence            44433333446678899999877888888999887654432111  2222334566776544666779999999999999


Q ss_pred             cCCce
Q psy11549        238 RSLPV  242 (261)
Q Consensus       238 ~~~~s  242 (261)
                      .+...
T Consensus        83 ~~~Sd   87 (96)
T d1f6fb1          83 SSSSD   87 (96)
T ss_dssp             EEECC
T ss_pred             Ccccc
Confidence            76554

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.86  E-value=5.9e-05  Score=47.18  Aligned_cols=71  Identities=17%  Similarity=0.270  Sum_probs=47.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEc--CCcccccc---------CCceEE----eCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFN--NSGETLDV---------GSERFS----SGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~~~---------~~~~~~----~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+..|++++|.|...+... ...+.||+.  +++..+-.         ...++.    .......|.|.++..+|+|.|
T Consensus        11 v~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~Y   90 (120)
T d1hxma1          11 VPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGSY   90 (120)
T ss_dssp             EEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEEE
T ss_pred             EEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCcee
Confidence            66789999999999876542 126999973  22111100         011221    233457899999999999999


Q ss_pred             EEEEEcC
Q psy11549        133 SCAAQNA  139 (261)
Q Consensus       133 ~C~~~~~  139 (261)
                      .|.....
T Consensus        91 yCA~~~~   97 (120)
T d1hxma1          91 YCACDTL   97 (120)
T ss_dssp             EEEEECC
T ss_pred             ecCcccC
Confidence            9987653

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.84  E-value=2.2e-05  Score=48.53  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=47.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-----------cCCceE----EeCCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-----------VGSERF----SSGSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-----------~~~~~~----~~~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+..|++++|.|...+... ..-+.|++-..+....           ....++    ........|.|.++..+|++.|
T Consensus        10 ~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~Y   89 (111)
T d1cd0a_          10 VSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADY   89 (111)
T ss_dssp             EEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             eEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcEE
Confidence            77889999999999876432 1148999743221110           001111    1234567899999999999999


Q ss_pred             EEEEEcC
Q psy11549        133 SCAAQNA  139 (261)
Q Consensus       133 ~C~~~~~  139 (261)
                      .|.....
T Consensus        90 yCA~~~~   96 (111)
T d1cd0a_          90 YCQSYDA   96 (111)
T ss_dssp             EEEEEET
T ss_pred             EEeeccC
Confidence            9986643

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.84  E-value=3.7e-05  Score=47.65  Aligned_cols=68  Identities=15%  Similarity=0.199  Sum_probs=44.5

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc---------------cCCceEE--eCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD---------------VGSERFS--SGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~~~~--~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|++++|.|..... .. .+.||+-..+..+.               .......  .......|.|.++..+|+|.
T Consensus        10 ~~~~~G~~v~l~C~~~~~-~~-~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   87 (113)
T d1j8he1          10 LVKRTGEKVFLECVQDMD-HE-NMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSM   87 (113)
T ss_dssp             EEEETTCCEEECEEESSC-CS-EEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEEcCC-cc-EEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCccc
Confidence            567899999999986432 23 79999743221111               0011111  12334579999999999999


Q ss_pred             EEEEEEc
Q psy11549        132 LSCAAQN  138 (261)
Q Consensus       132 y~C~~~~  138 (261)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (113)
T d1j8he1          88 YLCASSS   94 (113)
T ss_dssp             EEEEEEC
T ss_pred             EEeeEcc
Confidence            9999864

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.83  E-value=8.4e-05  Score=45.81  Aligned_cols=69  Identities=17%  Similarity=0.369  Sum_probs=45.2

Q ss_pred             EEeeCCCcEEEEEEEeeCC----CCceeEEEEcCCccccc--c---------CCceE--EeCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADP----PARSFKWKFNNSGETLD--V---------GSERF--SSGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~----~~~~~~W~~~~~~~~~~--~---------~~~~~--~~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+..|++++|.|......    ...-+.||+...+....  .         ...++  ...+....|.|.++.++|++.
T Consensus        11 ls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsAv   90 (112)
T d1ncwl1          11 ISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLGV   90 (112)
T ss_dssp             EEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCEe
Confidence            6678999999999875432    12258999754332211  0         00112  233455689999999999999


Q ss_pred             EEEEEE
Q psy11549        132 LSCAAQ  137 (261)
Q Consensus       132 y~C~~~  137 (261)
                      |.|...
T Consensus        91 YYC~~~   96 (112)
T d1ncwl1          91 YYCWQG   96 (112)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            999654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.82  E-value=1.1e-06  Score=52.93  Aligned_cols=71  Identities=23%  Similarity=0.384  Sum_probs=45.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc-----------cCCceEEe----CCceeEEEEecCCCCcCeEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD-----------VGSERFSS----GSRGSMLRYTPVTELDYGTLS  133 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~~~~~----~~~~~~l~i~~~~~~d~g~y~  133 (261)
                      +.+.+|++++|.|..... .. .+.||+-..+....           ....++..    ......|.|.++..+|+|.|.
T Consensus         3 lsV~eG~~vtL~C~~~~~-~~-~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTS-IN-NLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSC-EE-EEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             ceECCCCCEEEEEEEeCC-cc-cEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            356799999999987543 23 79999732221110           01111211    223457999999999999999


Q ss_pred             EEEEcCCc
Q psy11549        134 CAAQNAIG  141 (261)
Q Consensus       134 C~~~~~~~  141 (261)
                      |.+....+
T Consensus        81 CA~~~~~g   88 (96)
T d1ymmd1          81 CATDTTSG   88 (96)
T ss_dssp             EEEEETTS
T ss_pred             EeEecCCC
Confidence            99876443

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=7.6e-05  Score=45.59  Aligned_cols=76  Identities=14%  Similarity=0.038  Sum_probs=44.7

Q ss_pred             ecCCeEEEEeecCCCCCCC--eEEEEEEEeCCccceeE--EEecCC---CCcEEEcCCCCCCccEEEEEEEEEcCCCcCC
Q psy11549        168 ETTSSVHISCTPGYDGGLP--QTFTLELYSASDLNLLV--NLTNLD---TPAFTLEDLGLDGTVLMRVVISGVNAKGRSL  240 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p--~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~  240 (261)
                      ..|..++|.|.+  .++.|  ..-+.|+++........  ......   ...+.+...+.++++.|  +|.|.|.+|...
T Consensus        15 ~~G~~v~l~C~v--~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~y--tC~A~n~~~~~~   90 (106)
T d1zxqa1          15 AVGKSFTIECRV--PTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNF--SCLAVLDLMSRG   90 (106)
T ss_dssp             CTTSEEEEEEEE--CSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEE--EEEEEEECGGGT
T ss_pred             eCCCEEEEEEEE--eCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEE--EEEEEecCCCCC
Confidence            469999999998  55544  33334555433221111  111111   12456665556788899  999999999665


Q ss_pred             ceeeeee
Q psy11549        241 PVIWDDF  247 (261)
Q Consensus       241 ~s~~~~~  247 (261)
                      ...+..+
T Consensus        91 ~~~~~~~   97 (106)
T d1zxqa1          91 GNIFHKH   97 (106)
T ss_dssp             CCEEEEE
T ss_pred             CeeEecc
Confidence            5555544

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=0.00056  Score=38.50  Aligned_cols=77  Identities=17%  Similarity=0.243  Sum_probs=50.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccC--CceEE---eCC--ceeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVG--SERFS---SGS--RGSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~--~~~~~---~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      -.+..|+...|.|.+.--..-+++.|.+-....-..+.  .....   ..+  ....|.+..+..+|.|.|+|.|.-..+
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            55778999999999986654338999874432222222  12111   112  234677789999999999999987766


Q ss_pred             eEEe
Q psy11549        142 TQVT  145 (261)
Q Consensus       142 ~~~~  145 (261)
                      ...+
T Consensus        93 vieS   96 (104)
T d1xaua_          93 VINS   96 (104)
T ss_dssp             EEEC
T ss_pred             heec
Confidence            5443

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.81  E-value=3.3e-05  Score=47.38  Aligned_cols=69  Identities=20%  Similarity=0.325  Sum_probs=45.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccc--c--C-------CceE--EeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLD--V--G-------SERF--SSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~--~--~-------~~~~--~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      +.+..|++++|.|........ .+.||+-..+....  .  .       ..++  ........|.|.++..+|+|.|.|.
T Consensus         9 ~~~~~G~svtl~C~~~~~~~~-~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA   87 (108)
T d1nfde1           9 ASVTVGETVKITCSGDQLPKN-FAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL   87 (108)
T ss_dssp             EEEETTSCCCEEEEETTGGGS-CCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred             eEECCCCCEEEEEECCCCCCc-cEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEE
Confidence            667799999999977543333 58999743222110  0  0       0112  2234456899999999999999998


Q ss_pred             EEc
Q psy11549        136 AQN  138 (261)
Q Consensus       136 ~~~  138 (261)
                      +..
T Consensus        88 ~~~   90 (108)
T d1nfde1          88 SSY   90 (108)
T ss_dssp             EEE
T ss_pred             eec
Confidence            764

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.78  E-value=4.5e-05  Score=47.70  Aligned_cols=70  Identities=17%  Similarity=0.343  Sum_probs=45.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------c---------CCceEEe----CCceeEEEEecCCCCc
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------V---------GSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~---------~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      +....|++++|.|.+.+... ...+.||+-..+..+.      .         ...++..    ......|.|.++..+|
T Consensus        11 v~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~D   90 (120)
T d1ypzf1          11 ISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEED   90 (120)
T ss_dssp             EEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGG
T ss_pred             EEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccccccc
Confidence            66779999999999765432 1258999743221110      0         0112221    2335679999999999


Q ss_pred             CeEEEEEEEc
Q psy11549        129 YGTLSCAAQN  138 (261)
Q Consensus       129 ~g~y~C~~~~  138 (261)
                      ++.|.|....
T Consensus        91 sa~YyCA~~~  100 (120)
T d1ypzf1          91 EAIYYCSYGE  100 (120)
T ss_dssp             CSEEEEEECC
T ss_pred             ceeEEEEEcC
Confidence            9999998764

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=7.1e-05  Score=46.23  Aligned_cols=68  Identities=16%  Similarity=0.233  Sum_probs=44.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc---------------CCceEE--eCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV---------------GSERFS--SGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---------------~~~~~~--~~~~~~~l~i~~~~~~d~g~  131 (261)
                      ..+..|++++|.|..... .. .+.||+-..+..+..               ....+.  .......|.|.++.++|++.
T Consensus         9 ~~~~~G~svtl~C~~s~~-~~-~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsav   86 (112)
T d2bnub1           9 QVLKTGQSMTLQCAQDMN-HE-YMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSV   86 (112)
T ss_dssp             EEEETTCCEEEEEEESSC-CS-EEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEE
T ss_pred             EEECCCCCEEEEEEEECC-cc-ceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEE
Confidence            557799999999987543 33 799997432211110               011111  12234579999999999999


Q ss_pred             EEEEEEc
Q psy11549        132 LSCAAQN  138 (261)
Q Consensus       132 y~C~~~~  138 (261)
                      |.|.+..
T Consensus        87 YyCA~~~   93 (112)
T d2bnub1          87 YFCASSY   93 (112)
T ss_dssp             EEEEEEC
T ss_pred             EEEeecC
Confidence            9998764

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.74  E-value=2.9e-05  Score=48.10  Aligned_cols=69  Identities=12%  Similarity=0.203  Sum_probs=45.1

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc--------------CCceEE---eCCceeEEEEecCCCCcCeE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV--------------GSERFS---SGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--------------~~~~~~---~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +.+.+|++++|.|..... .. .+.||+-..+.....              ....+.   .......|.|..+..+|++.
T Consensus         8 ~~~~~G~svtL~C~~~~~-~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   85 (112)
T d2cdeb1           8 LVIGTGKKITLECSQTMG-HD-KMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQ   85 (112)
T ss_dssp             EEEETTCCBCCEEEETTC-CS-EEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSE
T ss_pred             EEECCCCCEEEEEEEeCC-cc-cEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccccc
Confidence            567899999999986533 23 799997543222110              000111   12234579999999999999


Q ss_pred             EEEEEEcC
Q psy11549        132 LSCAAQNA  139 (261)
Q Consensus       132 y~C~~~~~  139 (261)
                      |.|.+...
T Consensus        86 YyCA~~~~   93 (112)
T d2cdeb1          86 YLCASSEN   93 (112)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecC
Confidence            99988754

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.00018  Score=42.61  Aligned_cols=68  Identities=10%  Similarity=0.135  Sum_probs=40.0

Q ss_pred             eCCCcEEEEEEEeeC-CCCceeEEEEcCCccccc-cCCceEEeCC--ceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         72 SRSESVDIHCAVEAD-PPARSFKWKFNNSGETLD-VGSERFSSGS--RGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~-~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ..++.++|.|.+.+. |....+.|.++|+..... ........++  .........+...+...|+|.+...
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHP   84 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECT
T ss_pred             CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeC
Confidence            356778999999996 456699999987542211 1111222121  1212222334445566899999986

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00043  Score=41.10  Aligned_cols=70  Identities=16%  Similarity=0.204  Sum_probs=41.2

Q ss_pred             EeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeC--Cc----eeEEEEecCCCCcCeEEEEEEEcCCceE
Q psy11549         70 GASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSG--SR----GSMLRYTPVTELDYGTLSCAAQNAIGTQ  143 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~  143 (261)
                      ....++.++|.|.+.+..|...+.|.+++..  +..........  ++    .+.|.+.   ..+...|+|.+....-..
T Consensus        12 ~~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~--~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~   86 (95)
T d1dr9a2          12 EIPTSNIRRIICSTSGGFPEPHLSWLENGEE--LNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRV   86 (95)
T ss_dssp             ECSSTTEEEEEEEEEEESSCEEEEEEESSCE--ECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCE
T ss_pred             ccCCCCEEEEEEEECcccCCCEEEEecCCcE--ecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCC
Confidence            3446788999999998644339999987742  22111111111  11    2245554   345578999998865443


Q ss_pred             E
Q psy11549        144 V  144 (261)
Q Consensus       144 ~  144 (261)
                      .
T Consensus        87 ~   87 (95)
T d1dr9a2          87 N   87 (95)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00018  Score=42.59  Aligned_cols=75  Identities=13%  Similarity=0.041  Sum_probs=49.4

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEE-EcCCCcCCceeeee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISG-VNAKGRSLPVIWDD  246 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a-~N~~G~~~~s~~~~  246 (261)
                      ..|..|+|.|..   ......|.++ +........ .........|.|.+++..++|.|  +|.. .+...++++|.+++
T Consensus        16 ~~G~~VTL~C~~---~~~~~~f~L~-Keg~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y--~C~~~~~~~~wS~~SdpLe   88 (93)
T d1olla2          16 ISGEKVTFYCRL---DTATSMFLLL-KEGRSSHVQ-RGYGKVQAEFPLGPVTTAHRGTY--RCFGSYNNHAWSFPSEPVK   88 (93)
T ss_dssp             ETTCEEEEEEEC---SSSCSEEEEE-EESSSCEEE-EEECSSEEEEEEEECCGGGCEEE--EEECEEETTEECCCCCCEE
T ss_pred             cCCCcEEEEECC---CCCCCEEEEE-ECCCcccee-ecCCCceeEEEecccChhcCceE--EEEeECCCCCcCCCCCCEE
Confidence            459999999995   2222445554 443333222 22333457899999999999999  6643 34455899999998


Q ss_pred             eee
Q psy11549        247 FSM  249 (261)
Q Consensus       247 ~~~  249 (261)
                      +..
T Consensus        89 L~V   91 (93)
T d1olla2          89 LLV   91 (93)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            764

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=3e-05  Score=48.51  Aligned_cols=37  Identities=24%  Similarity=0.430  Sum_probs=26.2

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcc-eeeeEEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEA-TSNQLKLRVK   56 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~-~s~~~~l~V~   56 (261)
                      .+|.|.+++.+|+|.|.|.+.+..+.. ....+.|.|.
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            489999999999999999998764332 2345666664

>d2dtge2 b.1.2.1 (E:593-807) Insulin receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Insulin receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=6.6e-05  Score=50.93  Aligned_cols=31  Identities=10%  Similarity=0.102  Sum_probs=27.2

Q ss_pred             CCcEEEcCCCCCCccEEEEEEEEEcCCCcCCce
Q psy11549        210 TPAFTLEDLGLDGTVLMRVVISGVNAKGRSLPV  242 (261)
Q Consensus       210 ~~~~~i~~~~l~~~~~Y~~~~~a~N~~G~~~~s  242 (261)
                      ...++|.+  |.+++.|.|++.|.|..|.+..+
T Consensus       154 ~~~~~i~~--L~p~t~Y~~~V~A~n~~~~~~~~  184 (196)
T d2dtge2         154 KESLVISG--LRHFTGYRIELQACNQDTPEERC  184 (196)
T ss_dssp             CSEEEECS--SCSSCEEEECCEEESCSSSSCCB
T ss_pred             eEEEEECC--CCCCCEEEEEEEEEECCCCCCCc
Confidence            45788999  99999999999999999988654

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.62  E-value=0.0002  Score=42.96  Aligned_cols=69  Identities=16%  Similarity=0.152  Sum_probs=39.4

Q ss_pred             eCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEE-e-CCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         72 SRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFS-S-GSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~-~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      ..|+.++|.|.+.+..+ ...+.|.++|............. . ++.........+...+...|+|++....
T Consensus        15 ~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          15 LLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             ccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECC
Confidence            46888999999999754 56899999875322111001111 1 1111112222333455668999999753

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=2.1e-05  Score=47.35  Aligned_cols=31  Identities=19%  Similarity=0.470  Sum_probs=24.1

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .+|+|.+++.+|+|.|+|.+.+.     +..+.|.|
T Consensus        67 ~sL~I~~l~~~DsG~Y~C~v~~~-----~~~v~L~V   97 (97)
T d2nxyb1          67 FPLIIKNLKIEDSDTYICEVEDQ-----KEEVQLLV   97 (97)
T ss_dssp             CCEEECSCCGGGCEEEEEEETTE-----EEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEecC-----CeEEEEEC
Confidence            47999999999999999998542     34455554

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.61  E-value=7.7e-05  Score=44.05  Aligned_cols=62  Identities=19%  Similarity=0.206  Sum_probs=37.3

Q ss_pred             CCCcEEEEEEEeeCC-CCceeEEEEcCCccccccCCceEEeCC--c---eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         73 RSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSSGS--R---GSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~~~--~---~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .+..++|.|.+.+.. ....+.|.+++..  ............  .   .+.|.+.   ..+...|+|++...
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~--~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~   81 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLA--SGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHE   81 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEE--CCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEe--CCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeC
Confidence            456789999999974 4668999998743  222111111111  1   2234443   34456899999875

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=6.5e-05  Score=45.23  Aligned_cols=67  Identities=15%  Similarity=0.075  Sum_probs=38.9

Q ss_pred             eCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCc-eEEe--CCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         72 SRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSE-RFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~-~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      ..|+.++|.|.+.+..+ ...+.|.+++....  .... ....  ++..+......+..++...|+|.+....
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~--~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNGKKIP--KVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECT--TCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCCeecC--CcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence            36788999999998754 55899999875221  1111 1111  1111122222334456668999998753

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.00042  Score=42.40  Aligned_cols=75  Identities=12%  Similarity=0.159  Sum_probs=45.5

Q ss_pred             ceEEeecCCeEEEEeecCCCCCCCe-EEEEEEEeCCccceeE------------------EEecCCCCcEEEcCCCCCCc
Q psy11549        163 CSVRNETTSSVHISCTPGYDGGLPQ-TFTLELYSASDLNLLV------------------NLTNLDTPAFTLEDLGLDGT  223 (261)
Q Consensus       163 ~~v~~~~~~~~~l~c~~~~~~~~p~-~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~i~~~~l~~~  223 (261)
                      ++|.+..|++++|.|......+.+. ...|+|+.........                  .........+.|.+++++|.
T Consensus         2 ~~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~   81 (110)
T d1ncna_           2 LKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDK   81 (110)
T ss_dssp             EEEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGC
T ss_pred             EEEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHC
Confidence            3566778999999998643333332 2444444432221000                  01113456799999999999


Q ss_pred             cEEEEEEEEEcCCC
Q psy11549        224 VLMRVVISGVNAKG  237 (261)
Q Consensus       224 ~~Y~~~~~a~N~~G  237 (261)
                      |.|.|.|...+..|
T Consensus        82 G~Y~C~V~~~~~~~   95 (110)
T d1ncna_          82 GLYQCIIHHKKPTG   95 (110)
T ss_dssp             EEEEEEEEEECSSS
T ss_pred             EEEEEEEEecCCCc
Confidence            99977766555554

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.51  E-value=0.00033  Score=41.65  Aligned_cols=76  Identities=14%  Similarity=0.106  Sum_probs=47.9

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--EEe-cCCCCcEEEcCCCCCCccEEEEEEEEE---cCCCcCCc
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--NLT-NLDTPAFTLEDLGLDGTVLMRVVISGV---NAKGRSLP  241 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~~~~l~~~~~Y~~~~~a~---N~~G~~~~  241 (261)
                      ..|..++|.|...   .....|.++...........  ... ......|.|..++..++|.|  +|.-.   ++..++++
T Consensus        14 ~~G~~VTl~C~~~---~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y--~C~y~~~~~p~~wS~p   88 (96)
T d1nkra1          14 KSEETVILQCWSD---VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTY--RCYGSVTHSPYQVSAP   88 (96)
T ss_dssp             ETTCCEEEEEEES---SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEE--EEEEEBTTBTTCCCCC
T ss_pred             CCCCcEEEEECCC---CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEE--EEEEEcCCCCCcccCC
Confidence            4599999999952   22234555433322221111  111 11235799999999999999  66553   45679999


Q ss_pred             eeeeeee
Q psy11549        242 VIWDDFS  248 (261)
Q Consensus       242 s~~~~~~  248 (261)
                      |.++++.
T Consensus        89 SdpLeL~   95 (96)
T d1nkra1          89 SDPLDIV   95 (96)
T ss_dssp             CCCEEEE
T ss_pred             CCCEEEE
Confidence            9999874

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=4.5e-05  Score=47.49  Aligned_cols=36  Identities=22%  Similarity=0.316  Sum_probs=27.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRVKY   57 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V~~   57 (261)
                      +|+|.+++.+|+|.|.|.+....... ...+.|+|..
T Consensus        75 sL~I~~l~~~DsG~Y~C~v~~~~~~~-~~~v~L~V~~  110 (116)
T d1xeda_          75 VVNIAQLSQDDSGRYKCGLGINSRGL-SFDVSLEVLE  110 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEESCGGGCC-EEEEEEEEEC
T ss_pred             EEEEhhhCcCCCEEEEEEEEcCCCCc-eEeEEEEEEC
Confidence            89999999999999999875443222 3456777764

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00026  Score=42.53  Aligned_cols=68  Identities=18%  Similarity=0.102  Sum_probs=39.7

Q ss_pred             eCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEe-CCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         72 SRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSS-GSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ..|+.++|.|.+.+..+ ...+.|.+++....-......... ++.........+..++.+.|+|.+...
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHV   86 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeC
Confidence            47889999999999854 558999998753211000111111 121112222333455667899999875

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.49  E-value=0.00041  Score=42.81  Aligned_cols=67  Identities=16%  Similarity=0.351  Sum_probs=43.7

Q ss_pred             eeCCCcEEEEEEEeeCCC---CceeEEEEcCCcccccc---------------CCceEEe----CCceeEEEEecCCCCc
Q psy11549         71 ASRSESVDIHCAVEADPP---ARSFKWKFNNSGETLDV---------------GSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~---------------~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      +..|++++|.|.+.+...   ...+.|++-..+..+..               ...++..    ......|.|.++..+|
T Consensus        12 v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~eD   91 (120)
T d2agjh1          12 VKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVD   91 (120)
T ss_dssp             CCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGGG
T ss_pred             ECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeecc
Confidence            567999999999886532   12688997432221110               0123332    2234579999999999


Q ss_pred             CeEEEEEEE
Q psy11549        129 YGTLSCAAQ  137 (261)
Q Consensus       129 ~g~y~C~~~  137 (261)
                      ++.|.|...
T Consensus        92 sAvYyCAr~  100 (120)
T d2agjh1          92 TATYYCART  100 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEeeEec
Confidence            999999744

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=0.0005  Score=42.70  Aligned_cols=68  Identities=7%  Similarity=0.026  Sum_probs=41.2

Q ss_pred             eeCCCcEEEEEEEeeCCCCc--eeEEEEcCCcccc-c-------------c-CCceE--EeCCceeEEEEecCCCCcCeE
Q psy11549         71 ASRSESVDIHCAVEADPPAR--SFKWKFNNSGETL-D-------------V-GSERF--SSGSRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~-~-------------~-~~~~~--~~~~~~~~l~i~~~~~~d~g~  131 (261)
                      +..|+.++|.|.........  .+.|++...+... -             . ...++  ........|.|.++..+|+|.
T Consensus        12 v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav   91 (118)
T d1yjdc1          12 VAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTDI   91 (118)
T ss_dssp             ECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCEE
T ss_pred             EeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCeE
Confidence            45799999999987554321  2345553221110 0             0 00111  123445579999999999999


Q ss_pred             EEEEEEc
Q psy11549        132 LSCAAQN  138 (261)
Q Consensus       132 y~C~~~~  138 (261)
                      |.|.+..
T Consensus        92 YyCa~~~   98 (118)
T d1yjdc1          92 YFCKIEV   98 (118)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9998653

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.48  E-value=0.00028  Score=43.16  Aligned_cols=72  Identities=11%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             EEeeCCCcEEEEEEEeeCC-CCceeEEEEcCCccc----ccc--C--------CceEEe----CCceeEEEEecCCCCcC
Q psy11549         69 VGASRSESVDIHCAVEADP-PARSFKWKFNNSGET----LDV--G--------SERFSS----GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~----~~~--~--------~~~~~~----~~~~~~l~i~~~~~~d~  129 (261)
                      ..+.+|++++|.|...+.. ....+.|++...+..    +..  .        ..++.+    ......|+|.++..+|+
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDs   84 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDS   84 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCC
Confidence            5678999999999987532 222688997432211    000  0        112222    23355799999999999


Q ss_pred             eEEEEEEEcCC
Q psy11549        130 GTLSCAAQNAI  140 (261)
Q Consensus       130 g~y~C~~~~~~  140 (261)
                      |.|.|......
T Consensus        85 a~YyCa~~~~~   95 (110)
T d1u9ka_          85 GLYRCVIYHPP   95 (110)
T ss_dssp             EEEEEEEECTT
T ss_pred             EEEEEEEeCCC
Confidence            99999986543

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.00014  Score=44.32  Aligned_cols=27  Identities=26%  Similarity=0.569  Sum_probs=22.9

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCCCc
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTKGE   45 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~~~   45 (261)
                      +.+|+|.+++.+|+|.|.|.+.+..+.
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~V~~~~~~   90 (105)
T d1dr9a1          64 NLSIVILALRPSDEGTYECVVLKYEKD   90 (105)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCTT
T ss_pred             cEEEEECcCChHHCeEEEEEEEeCCCC
Confidence            348999999999999999999766444

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00016  Score=44.25  Aligned_cols=25  Identities=12%  Similarity=0.452  Sum_probs=21.5

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCc
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGE   45 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~   45 (261)
                      +|.|.+++.+|+|.|.|.+......
T Consensus        71 ~L~I~~l~~~DsG~Y~C~v~~~~~~   95 (108)
T d1hkfa_          71 TVTMTDLREEDSGHYWCRIYRPSDN   95 (108)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTTC
T ss_pred             EEEEhhhCCCCCEEEEEEEecCCCC
Confidence            7999999999999999988755443

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.40  E-value=0.0006  Score=41.79  Aligned_cols=69  Identities=16%  Similarity=0.300  Sum_probs=45.5

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC---------CceEEe----CCceeEEEEecCCCCcC
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG---------SERFSS----GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~---------~~~~~~----~~~~~~l~i~~~~~~d~  129 (261)
                      .+..|++++|+|.+.+... ...+.|++--.+..++      ..         ..++.+    ......|.|.++..+|+
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence            4668999999999988654 3258898743222111      00         112332    23345799999999999


Q ss_pred             eEEEEEEEc
Q psy11549        130 GTLSCAAQN  138 (261)
Q Consensus       130 g~y~C~~~~  138 (261)
                      ..|.|....
T Consensus        90 A~YYCAr~~   98 (119)
T d1kxvc_          90 AMYYCKPSL   98 (119)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEeeeecc
Confidence            999997553

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.37  E-value=0.00049  Score=41.10  Aligned_cols=68  Identities=13%  Similarity=0.101  Sum_probs=38.1

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCcccccc--CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDV--GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .++..+|.|.+.+..+ ...+.|.+++.......  .......++..+.+....+...+...|+|.+....
T Consensus        17 ~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~s   87 (98)
T d1d5mb1          17 LQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS   87 (98)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTT
T ss_pred             cCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECC
Confidence            4566789999998755 55899999874322111  11111112223333344556677789999998753

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.00038  Score=41.28  Aligned_cols=68  Identities=13%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             eCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEe-CCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         72 SRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSS-GSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ..|+.++|.|.+.+..+ ...+.|.+++.............. ++.........+...+...|+|.+...
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~   82 (94)
T d1t7va1          13 APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHS   82 (94)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEET
T ss_pred             CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEEC
Confidence            35789999999999755 568999998742211000000011 111122222233445556899999875

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.36  E-value=0.00058  Score=40.71  Aligned_cols=69  Identities=16%  Similarity=0.126  Sum_probs=38.9

Q ss_pred             eCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEe--CCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         72 SRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSS--GSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      ..++.++|.|.+.+..+ ...+.|.+++..............  ++.........+..++...|+|.+....
T Consensus        15 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~s   86 (98)
T d1hdmb1          15 NTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIG   86 (98)
T ss_dssp             SSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCC
Confidence            46778999999999744 668999998753221111111111  1111111112233445568999999753

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.36  E-value=0.00054  Score=41.73  Aligned_cols=68  Identities=22%  Similarity=0.381  Sum_probs=44.9

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC--------CceEEe----CCceeEEEEecCCCCcCe
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG--------SERFSS----GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~--------~~~~~~----~~~~~~l~i~~~~~~d~g  130 (261)
                      +..|++++|+|.+.+... ...+.|++...+..++       ..        ..++.+    ......|.+.++..+|++
T Consensus        12 vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDTA   91 (116)
T d1a2yb_          12 VAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDTA   91 (116)
T ss_dssp             ECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccce
Confidence            568999999999998654 2268898743322211       01        112222    233457999999999999


Q ss_pred             EEEEEEEc
Q psy11549        131 TLSCAAQN  138 (261)
Q Consensus       131 ~y~C~~~~  138 (261)
                      .|.|.-..
T Consensus        92 vYYCAr~~   99 (116)
T d1a2yb_          92 RYYCARER   99 (116)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEeC
Confidence            99998543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.35  E-value=0.00041  Score=42.62  Aligned_cols=69  Identities=14%  Similarity=0.241  Sum_probs=44.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCCCceeEEEEcCCcccccc---------------CCceEEe-CCceeEEEEecCCCCcCeEE
Q psy11549         69 VGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDV---------------GSERFSS-GSRGSMLRYTPVTELDYGTL  132 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---------------~~~~~~~-~~~~~~l~i~~~~~~d~g~y  132 (261)
                      +.+.+|++++|.|........ .+.||+-..+..+..               ...++.. ......|.|..+..+|++.|
T Consensus        11 ~~~~~G~~vtL~C~~~~~~~~-~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa~Y   89 (112)
T d1fo0b_          11 RLVPRGQAVNLRCILKNSQYP-WMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTL   89 (112)
T ss_dssp             EECCTTCCEEEEEEESCTTCC-EEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCEEE
T ss_pred             EEECCCCCEEEEEEEecCCCC-cEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCccE
Confidence            567799999999998765544 799998543222110               0111211 11224688888899999999


Q ss_pred             EEEEEc
Q psy11549        133 SCAAQN  138 (261)
Q Consensus       133 ~C~~~~  138 (261)
                      .|....
T Consensus        90 ~Ca~~~   95 (112)
T d1fo0b_          90 YCTCSA   95 (112)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            999654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.35  E-value=0.00092  Score=40.71  Aligned_cols=69  Identities=22%  Similarity=0.367  Sum_probs=45.1

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------c-C--------CceEEe----CCceeEEEEecCCCCcCe
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------V-G--------SERFSS----GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~-~--------~~~~~~----~~~~~~l~i~~~~~~d~g  130 (261)
                      +..|++++|.|.+.+... ...+.|++-..+..++      . .        ..++.+    ......|.|.++..+|++
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDtA   91 (116)
T d7fabh1          12 VRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADTA   91 (116)
T ss_dssp             ECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccce
Confidence            567999999999997653 2268898743222111      0 0        112222    233557999999999999


Q ss_pred             EEEEEEEcC
Q psy11549        131 TLSCAAQNA  139 (261)
Q Consensus       131 ~y~C~~~~~  139 (261)
                      .|.|.....
T Consensus        92 vYyCAr~~~  100 (116)
T d7fabh1          92 VYYCARNLI  100 (116)
T ss_dssp             EEEEEEECS
T ss_pred             EEEeeeecC
Confidence            999986543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.34  E-value=0.00068  Score=41.33  Aligned_cols=70  Identities=14%  Similarity=0.256  Sum_probs=45.4

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|++++|+|.+.+... .-.+.|++-..+..++      ..          ..++.+    ......|.|.++..+|
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eD   90 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDD   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCc
Confidence            3668999999999998643 2258898743222111      01          112222    2334579999999999


Q ss_pred             CeEEEEEEEcC
Q psy11549        129 YGTLSCAAQNA  139 (261)
Q Consensus       129 ~g~y~C~~~~~  139 (261)
                      ++.|.|.....
T Consensus        91 tAvYYCA~~~~  101 (117)
T d1iqdb1          91 TAVYYCAVPDP  101 (117)
T ss_dssp             CEEEEEEECSS
T ss_pred             ceEEEEeEcCC
Confidence            99999986543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.34  E-value=0.0005  Score=42.19  Aligned_cols=66  Identities=23%  Similarity=0.332  Sum_probs=43.7

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCcccccc---------------CCceEEe----CCceeEEEEecCCCCcCe
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDV---------------GSERFSS----GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~---------------~~~~~~~----~~~~~~l~i~~~~~~d~g  130 (261)
                      +..|++++|.|.+.+... .-.+.|++-..+..++.               ...++.+    ......|.|.++..+|++
T Consensus        12 vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDtA   91 (120)
T d1dn0b1          12 LKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADTA   91 (120)
T ss_dssp             ECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccccc
Confidence            568999999999998654 22588987433222210               0122322    233456999999999999


Q ss_pred             EEEEEE
Q psy11549        131 TLSCAA  136 (261)
Q Consensus       131 ~y~C~~  136 (261)
                      .|.|..
T Consensus        92 ~YYCAr   97 (120)
T d1dn0b1          92 VYYCAR   97 (120)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999953

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=9.2e-05  Score=44.20  Aligned_cols=76  Identities=14%  Similarity=0.102  Sum_probs=48.0

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccEEEEEEEEE-cCCCcCCceee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVLMRVVISGV-NAKGRSLPVIW  244 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~-N~~G~~~~s~~  244 (261)
                      ..|..|+|.|....   .-..|.++ +.........  .........|.|.+++..++|.|  +|... ...+++++|.+
T Consensus        16 ~~G~~VTL~C~~~~---~~~~f~L~-keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y--~C~y~~~~~~~S~~Sd~   89 (96)
T d1ugna1          16 TQGSPVTLRCQGGQ---ETQEYRLY-REKKTAPWITRIPQELVKKGQFPIPSITWEHTGRY--RCYYGSDTAGRSESSDP   89 (96)
T ss_dssp             ETTCCEEEEEECCT---TCCCEEEE-ESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEE--EEEEEETTTEECCCCCC
T ss_pred             CCCCcEEEEEeCCC---CCCEEEEE-ECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeE--EEEEeCCCCCccccCCC
Confidence            46999999999521   12335553 3332221000  11122457899999999999999  55543 45678999999


Q ss_pred             eeeee
Q psy11549        245 DDFSM  249 (261)
Q Consensus       245 ~~~~~  249 (261)
                      +++..
T Consensus        90 leL~V   94 (96)
T d1ugna1          90 LELVV   94 (96)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98764

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=0.00047  Score=41.97  Aligned_cols=67  Identities=18%  Similarity=0.361  Sum_probs=44.2

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------c---------CCceEEe----CCceeEEEEecCCCCcCe
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------V---------GSERFSS----GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~---------~~~~~~~----~~~~~~l~i~~~~~~d~g  130 (261)
                      +..|++++|.|.+.+... ...+.|++.-.+..++      .         -..++.+    ......|.+.++..+|++
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDtA   91 (117)
T d1c5db1          12 VQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTA   91 (117)
T ss_dssp             ECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcce
Confidence            568999999999997654 2268898743222211      0         0112222    233457999999999999


Q ss_pred             EEEEEEE
Q psy11549        131 TLSCAAQ  137 (261)
Q Consensus       131 ~y~C~~~  137 (261)
                      .|.|...
T Consensus        92 vYYCAr~   98 (117)
T d1c5db1          92 IYFCTRE   98 (117)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecc
Confidence            9999643

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00044  Score=41.86  Aligned_cols=70  Identities=16%  Similarity=0.214  Sum_probs=39.9

Q ss_pred             CCCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEEeCCc----eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         73 RSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFSSGSR----GSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        73 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      .+..++|.|.+.+. |....+.|.+++...............++    .+.|.|..-.......|+|.+......
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t   94 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT   94 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEe
Confidence            45678999999985 45668999998753222111111111111    234555443223356799999987543

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.32  E-value=0.00076  Score=41.42  Aligned_cols=67  Identities=18%  Similarity=0.309  Sum_probs=43.6

Q ss_pred             eeCCCcEEEEEEEeeCCC---CceeEEEEcCCccccc------cCC---------ceEEe----CCceeEEEEecCCCCc
Q psy11549         71 ASRSESVDIHCAVEADPP---ARSFKWKFNNSGETLD------VGS---------ERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~------~~~---------~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      +..|++++|.|.+.+...   ...+.|++-..+..++      ...         .++.+    ......|.|.++..+|
T Consensus        12 vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~eD   91 (120)
T d1ai1h1          12 IKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNED   91 (120)
T ss_dssp             ECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             ECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeeccc
Confidence            568999999999997643   2257898743322221      111         12222    2334579999999999


Q ss_pred             CeEEEEEEE
Q psy11549        129 YGTLSCAAQ  137 (261)
Q Consensus       129 ~g~y~C~~~  137 (261)
                      ++.|.|...
T Consensus        92 tAvYYCAr~  100 (120)
T d1ai1h1          92 TAMYYCSRE  100 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             eeEEEEEec
Confidence            999999743

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.31  E-value=0.0011  Score=39.85  Aligned_cols=67  Identities=13%  Similarity=0.055  Sum_probs=39.0

Q ss_pred             eCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCCc----eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         72 SRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSR----GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      ..|+..+|.|.+.+..+ ...+.|.+++...............++    .+.|.+   ..++...|+|.+....-
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNF---TPEPSDIFSCIVTHEPD   87 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEE---CCCTTCCEEEEEEETTT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEE---ecCCCCEEEEEEEeCCC
Confidence            46778899999999755 668999998743111111111111222    123333   34455579999998643

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.30  E-value=0.00051  Score=41.82  Aligned_cols=70  Identities=16%  Similarity=0.240  Sum_probs=45.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+++.|+|.+.+... .-.+.|++--.+..++       ..         ..++.+    ......|.+.++..+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~e   89 (117)
T d1jpth1          10 GLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCC
Confidence            34678999999999998653 2268898743222111       01         112222    233457899999999


Q ss_pred             cCeEEEEEEEc
Q psy11549        128 DYGTLSCAAQN  138 (261)
Q Consensus       128 d~g~y~C~~~~  138 (261)
                      |++.|.|....
T Consensus        90 DTAvYYCAr~~  100 (117)
T d1jpth1          90 DTAVYYCARDT  100 (117)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CceEEEEeecC
Confidence            99999997543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.30  E-value=0.00094  Score=40.78  Aligned_cols=69  Identities=19%  Similarity=0.346  Sum_probs=44.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC--Cc--------eEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG--SE--------RFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~--~~--------~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+++.|.|.+.+... ...+.|++--.+..++      ..  ..        ++.+    ......|.|.++..+
T Consensus        10 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~e   89 (118)
T d1ct8b1          10 VLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCC
Confidence            34668999999999998653 2268898643322211      00  11        1111    233457899999999


Q ss_pred             cCeEEEEEEE
Q psy11549        128 DYGTLSCAAQ  137 (261)
Q Consensus       128 d~g~y~C~~~  137 (261)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (118)
T d1ct8b1          90 DSAIYYCARY   99 (118)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEeee
Confidence            9999999754

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00049  Score=40.90  Aligned_cols=75  Identities=12%  Similarity=0.069  Sum_probs=48.0

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeEEEecCCCCcEEEcCCCCCCccEEEEEEEEEc---CCCcCCceee
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLVNLTNLDTPAFTLEDLGLDGTVLMRVVISGVN---AKGRSLPVIW  244 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N---~~G~~~~s~~  244 (261)
                      ..|..++|.|..+.  ..-..|.++ +........ .........|.|.+++..++|.|  +|....   +..++++|..
T Consensus        17 ~~G~~VTL~C~~~~--~~~~~f~L~-k~g~~~~~~-~~~~~~~a~F~l~~v~~~~~G~Y--~C~y~~~~~p~~~S~~Sd~   90 (96)
T d1ucta2          17 MPGENISLTCSSAH--IPFDRFSLA-KEGELSLPQ-HQSGEHPANFSLGPVDLNVSGIY--RCYGWYNRSPYLWSFPSNA   90 (96)
T ss_dssp             CTTCCCEEEEECSS--SCCSEEEEE-ETTCSSCCS-EEECSSSEEEECCSCCGGGCEEE--EEEEECTTSTTEECCCCCC
T ss_pred             CCCCeEEEEEeCCC--CCceEEEEE-ECCcccceE-EcCCCcccEEEEeccccccCcEE--EEEEEcCCCCCCccCCCCC
Confidence            46999999998421  112345454 433322211 22333457899999999999999  666543   3458999999


Q ss_pred             eeee
Q psy11549        245 DDFS  248 (261)
Q Consensus       245 ~~~~  248 (261)
                      +++.
T Consensus        91 leL~   94 (96)
T d1ucta2          91 LELV   94 (96)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8865

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.001  Score=39.67  Aligned_cols=74  Identities=14%  Similarity=0.110  Sum_probs=44.0

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccce-eEEE----ecCCCCcEEEcCCCCCCccEEEEEEEEEc---CCCcC
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNL-LVNL----TNLDTPAFTLEDLGLDGTVLMRVVISGVN---AKGRS  239 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~i~~~~l~~~~~Y~~~~~a~N---~~G~~  239 (261)
                      ..|..|+|.|...   ..-..|.++ +....... ....    .......|.|..++..++|.|  +|.-..   +..+|
T Consensus        16 ~~G~~VTL~C~~~---~~~~~f~L~-k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y--~C~y~~~~~p~~wS   89 (98)
T d1ugna2          16 NSGGNVTLQCDSQ---VAFDGFILC-KEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWY--RCYAYDSNSPYEWS   89 (98)
T ss_dssp             ETTCCEEEEEECS---SCCSEEEEE-EC------CEEEC------CCEEEEEECCCCTTSCEEE--EEEEECTTSTTEEC
T ss_pred             CCCCcEEEEeCCC---CCCCEEEEE-ECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEE--EEeeEcCCCCCCcc
Confidence            4599999999952   122345554 33222211 1111    112235799999999999999  665533   34589


Q ss_pred             Cceeeeee
Q psy11549        240 LPVIWDDF  247 (261)
Q Consensus       240 ~~s~~~~~  247 (261)
                      ++|.+++.
T Consensus        90 ~pSd~LeL   97 (98)
T d1ugna2          90 LPSDLLEL   97 (98)
T ss_dssp             CCCCCEEE
T ss_pred             CCCCcccc
Confidence            99998875

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.001  Score=40.58  Aligned_cols=70  Identities=21%  Similarity=0.334  Sum_probs=45.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|++++|.|.+.+... .-.+.|++-..+..++       ..         ..++.+    ......|.|.++..+
T Consensus         9 ~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~e   88 (117)
T d1um5h1           9 VLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSE   88 (117)
T ss_dssp             EEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCC
Confidence            34668999999999987653 2268998743322221       01         112222    233457999999999


Q ss_pred             cCeEEEEEEEc
Q psy11549        128 DYGTLSCAAQN  138 (261)
Q Consensus       128 d~g~y~C~~~~  138 (261)
                      |++.|.|....
T Consensus        89 DtAvYYCAr~~   99 (117)
T d1um5h1          89 DSAVYYCARSS   99 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cceEEEEeecc
Confidence            99999997543

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.28  E-value=0.00065  Score=40.81  Aligned_cols=69  Identities=17%  Similarity=0.295  Sum_probs=45.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc----c--------------CCceEEe----CCceeEEEEecCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD----V--------------GSERFSS----GSRGSMLRYTPVT  125 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~----~--------------~~~~~~~----~~~~~~l~i~~~~  125 (261)
                      ..+..|++++|+|.+.+... ...+.|++-..+..++    +              ...++.+    ......|.|.++.
T Consensus        10 ~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL~   89 (109)
T d2ck0h1          10 GLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNLK   89 (109)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCCC
Confidence            34678999999999997653 2258898643322211    0              0112322    2334578999999


Q ss_pred             CCcCeEEEEEEE
Q psy11549        126 ELDYGTLSCAAQ  137 (261)
Q Consensus       126 ~~d~g~y~C~~~  137 (261)
                      .+|++.|.|.-.
T Consensus        90 ~eDTAvYYCAr~  101 (109)
T d2ck0h1          90 TEDTGIYYCVRG  101 (109)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HhHCEEEEEEEc
Confidence            999999999854

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.26  E-value=0.00053  Score=41.82  Aligned_cols=68  Identities=22%  Similarity=0.318  Sum_probs=43.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+.++|+|.+.+... .-.+.|++--.+..++       ..         ..++.+    ......|.+.++..+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~e   89 (118)
T d1nlbh1          10 ELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccC
Confidence            34678999999999998653 1258898643222111       00         112222    223446899999999


Q ss_pred             cCeEEEEEE
Q psy11549        128 DYGTLSCAA  136 (261)
Q Consensus       128 d~g~y~C~~  136 (261)
                      |++.|.|..
T Consensus        90 DtAvYYCAr   98 (118)
T d1nlbh1          90 DTATYFCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999953

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00059  Score=40.47  Aligned_cols=64  Identities=11%  Similarity=0.174  Sum_probs=36.6

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCc-eEEe-CCc---eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSE-RFSS-GSR---GSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~-~~~~-~~~---~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .+..++|.|.+.+..+ ...+.|.+++.......... .... .+.   .+.|.+.   ..+...|+|++...
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~---~~~~~~ytC~V~H~   83 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVP---SGEEQRYTCHVQHE   83 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEE---cCCCCEEEEEEEEC
Confidence            3567999999999865 55799999875322111111 1111 111   2233333   33445799999975

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.26  E-value=0.00051  Score=41.08  Aligned_cols=75  Identities=11%  Similarity=-0.133  Sum_probs=45.9

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--EEecCCCCcEEEcCCCCCCccEEEEEEEEE---cCCCcCCce
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--NLTNLDTPAFTLEDLGLDGTVLMRVVISGV---NAKGRSLPV  242 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~l~~~~~Y~~~~~a~---N~~G~~~~s  242 (261)
                      ..|.+|+|.|....   ....|.++ ++........  .........+.|..+...++|.|  +|...   ++..+|++|
T Consensus        18 ~~G~~VTL~C~~~~---~~~~f~L~-k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y--~C~y~~~~~p~~wS~~S   91 (99)
T d1nkra2          18 LAGENVTLSCSSRS---SYDMYHLS-REGEAHERRLPAGPKVNGTFQADFPLGPATHGGTY--RCFGSFHDSPYEWSKSS   91 (99)
T ss_dssp             CTTCEEEEEEEESS---CCSEEEEE-ETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEE--EEEEEETTEEEEECCCC
T ss_pred             cCCCeEEEEECCCC---CccEEEEE-ECCCccccEEEccccCCccEEEEEeccccccCEEE--EEEeecCCCCCCccCCC
Confidence            46999999999522   22345543 4443332222  12223334567777778899999  66554   234589999


Q ss_pred             eeeeee
Q psy11549        243 IWDDFS  248 (261)
Q Consensus       243 ~~~~~~  248 (261)
                      .++++.
T Consensus        92 dpLeL~   97 (99)
T d1nkra2          92 DPLLVS   97 (99)
T ss_dssp             CCEEEE
T ss_pred             CCEEEE
Confidence            998865

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.25  E-value=0.00075  Score=40.31  Aligned_cols=65  Identities=18%  Similarity=0.247  Sum_probs=37.8

Q ss_pred             eCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEe--CCc---eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         72 SRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSS--GSR---GSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ..|...+|.|.+.+..+ ...+.|.++|..............  ++.   .+.|.+.   ..+...|+|++...
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~   87 (99)
T d1uvqa1          17 TLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSADEIYDCKVEHW   87 (99)
T ss_dssp             CTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---CCTTCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---CCCCCEEEEEEEeC
Confidence            46778899999999854 568999998743211110111111  111   2234433   34455799999875

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00069  Score=39.62  Aligned_cols=64  Identities=13%  Similarity=0.168  Sum_probs=36.6

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCcccccc--CCceEEeCCc---eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDV--GSERFSSGSR---GSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~--~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .++.++|.|.+.+..+ ...+.|.++++......  .......++.   .+.|.+..   .+...|+|.+...
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~   83 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQ   83 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEEC
Confidence            4668999999999765 55899999875321111  0011111111   22444543   3334699999864

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.00021  Score=44.26  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=21.1

Q ss_pred             CCeEEEccCCCCCCEeEEEEEEeCC
Q psy11549         19 NQSLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        19 ~~~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      +.+|+|.+++.+|+|.|.|++....
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          78 VCNLLLKDLKPEDSGTYNFRFEISD  102 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECC-
T ss_pred             EEEEEECCCChhHCEEEEEEEEeCC
Confidence            3479999999999999999986554

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.23  E-value=0.0017  Score=39.91  Aligned_cols=69  Identities=17%  Similarity=0.299  Sum_probs=45.0

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCcccccc------C----------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDV------G----------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~------~----------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+.++|.|.+.+... ...+.|++-..+..++.      .          ..++.+    ......|.|.++..+|
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eD   90 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSND   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCc
Confidence            3668999999999987653 22689987433222110      0          112222    2334568999999999


Q ss_pred             CeEEEEEEEc
Q psy11549        129 YGTLSCAAQN  138 (261)
Q Consensus       129 ~g~y~C~~~~  138 (261)
                      ++.|.|....
T Consensus        91 tA~YYCAr~~  100 (120)
T d1pg7x1          91 SAVYYCARED  100 (120)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeeecC
Confidence            9999998643

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.23  E-value=0.0016  Score=40.77  Aligned_cols=69  Identities=17%  Similarity=0.322  Sum_probs=44.5

Q ss_pred             eeCCCcEEEEEEEeeCCCC---ceeEEEEcCCccccc-------c--------CCceEEe----CCceeEEEEecCCCCc
Q psy11549         71 ASRSESVDIHCAVEADPPA---RSFKWKFNNSGETLD-------V--------GSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~---~~~~W~~~~~~~~~~-------~--------~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      +..|++++|.|.+.+....   .-+.|++-..+..++       .        -..++.+    ......|.|.++..+|
T Consensus        12 vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~eD   91 (132)
T d1tjgh1          12 VKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPVD   91 (132)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCccc
Confidence            5689999999999875431   148898643222111       0        0122222    2234569999999999


Q ss_pred             CeEEEEEEEcC
Q psy11549        129 YGTLSCAAQNA  139 (261)
Q Consensus       129 ~g~y~C~~~~~  139 (261)
                      ++.|.|.....
T Consensus        92 tAvYYCAr~~~  102 (132)
T d1tjgh1          92 TATYFCAHRRG  102 (132)
T ss_dssp             CEEEEEEEECC
T ss_pred             ceEEEEEEecC
Confidence            99999986643

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.23  E-value=0.0006  Score=41.94  Aligned_cols=67  Identities=15%  Similarity=0.206  Sum_probs=43.0

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEc--CCcccc----ccC----------CceEEe----CCceeEEEEecCCCCcC
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFN--NSGETL----DVG----------SERFSS----GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~--~~~~~~----~~~----------~~~~~~----~~~~~~l~i~~~~~~d~  129 (261)
                      +..|++++|.|.+.+... ...+.|++-  +++..+    ...          ..++.+    ......|.|.++..+|+
T Consensus        12 ~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eDs   91 (119)
T d1qnzh_          12 VKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDDS   91 (119)
T ss_dssp             ECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGGC
T ss_pred             ECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccce
Confidence            567999999999987542 225899863  322111    000          112222    23345699999999999


Q ss_pred             eEEEEEEE
Q psy11549        130 GTLSCAAQ  137 (261)
Q Consensus       130 g~y~C~~~  137 (261)
                      +.|.|...
T Consensus        92 AvYYCA~~   99 (119)
T d1qnzh_          92 AVYYCAIH   99 (119)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEEEe
Confidence            99999654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.22  E-value=0.00063  Score=41.24  Aligned_cols=67  Identities=18%  Similarity=0.345  Sum_probs=43.6

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|++++|.|.+.+... ...+.|++-..+..++       ..         ..++.+    ......|.|.++..+|
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eD   90 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSED   90 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCc
Confidence            3568999999999987653 2258898643221111       11         112222    2334569999999999


Q ss_pred             CeEEEEEE
Q psy11549        129 YGTLSCAA  136 (261)
Q Consensus       129 ~g~y~C~~  136 (261)
                      ++.|.|..
T Consensus        91 tAvYYCA~   98 (114)
T d1indh1          91 TALYFCAS   98 (114)
T ss_dssp             CEEEEEEC
T ss_pred             ccEEEECC
Confidence            99999974

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.21  E-value=0.0011  Score=40.85  Aligned_cols=69  Identities=19%  Similarity=0.359  Sum_probs=45.3

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------c-C---------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------V-G---------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~-~---------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|+|.+.+... ...+.|++-..+..++      . .         ..++.+    ......|.+.++..+|
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD   89 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED   89 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence            3668999999999997654 2268998743322211      0 1         112222    2334578999999999


Q ss_pred             CeEEEEEEEc
Q psy11549        129 YGTLSCAAQN  138 (261)
Q Consensus       129 ~g~y~C~~~~  138 (261)
                      ++.|.|....
T Consensus        90 tAvYYCAr~~   99 (124)
T d1zvya1          90 TAIYTCGATR   99 (124)
T ss_dssp             CEEEEEEECS
T ss_pred             ceEEEEeecc
Confidence            9999997643

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.20  E-value=0.00082  Score=41.48  Aligned_cols=67  Identities=18%  Similarity=0.320  Sum_probs=42.3

Q ss_pred             eeCCCcEEEEEEEeeCCC---CceeEEEEcCCccccc------c-C--------CceEEe----CCceeEEEEecCCCCc
Q psy11549         71 ASRSESVDIHCAVEADPP---ARSFKWKFNNSGETLD------V-G--------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~------~-~--------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      +..|++++|.|.+.+...   ...+.|++-..+..++      . .        ..++..    ......|.|.++..+|
T Consensus        12 vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~eD   91 (123)
T d1r0ah1          12 VQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETAD   91 (123)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             ECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccccc
Confidence            567999999999987542   1247898632221111      0 0        112322    2234569999999999


Q ss_pred             CeEEEEEEE
Q psy11549        129 YGTLSCAAQ  137 (261)
Q Consensus       129 ~g~y~C~~~  137 (261)
                      +..|.|...
T Consensus        92 sAvYyCAr~  100 (123)
T d1r0ah1          92 TAIYYCAQS  100 (123)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEeeccc
Confidence            999999743

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.20  E-value=0.00086  Score=40.92  Aligned_cols=68  Identities=18%  Similarity=0.300  Sum_probs=43.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|++++|.|.+.+... ...+.|++-..+..++      ..          ..++.+    ......|.|.++..+
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~e   89 (117)
T d1mfah1          10 VVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSE   89 (117)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCC
Confidence            34568999999999997653 2258888632222111      00          012221    233456899999999


Q ss_pred             cCeEEEEEE
Q psy11549        128 DYGTLSCAA  136 (261)
Q Consensus       128 d~g~y~C~~  136 (261)
                      |++.|.|.-
T Consensus        90 DtAvYYCAr   98 (117)
T d1mfah1          90 DSAVYYCTR   98 (117)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEec
Confidence            999999974

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.20  E-value=0.00088  Score=40.86  Aligned_cols=68  Identities=16%  Similarity=0.216  Sum_probs=44.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC-C--------ceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG-S--------ERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~-~--------~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+++.|.|.+.+... ...+.|++-..+..++       .. .        .++.+    ......|.+.++..+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~e   89 (118)
T d2jelh1          10 ELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccC
Confidence            34678999999999998654 2268998743322211       01 1        12222    223447899999999


Q ss_pred             cCeEEEEEE
Q psy11549        128 DYGTLSCAA  136 (261)
Q Consensus       128 d~g~y~C~~  136 (261)
                      |++.|.|..
T Consensus        90 DTAvYYCAr   98 (118)
T d2jelh1          90 DSAIYYCAR   98 (118)
T ss_dssp             GCEEEEEEE
T ss_pred             cceeeeEEE
Confidence            999999954

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.19  E-value=0.0018  Score=39.76  Aligned_cols=70  Identities=16%  Similarity=0.306  Sum_probs=45.6

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc--------cCC--------ceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD--------VGS--------ERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~--------~~~--------~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|++++|.|.+.+... .-.+.|++-..+..++        ...        .++.+    ......|.+.++..+
T Consensus        11 ~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~e   90 (122)
T d1vgeh1          11 EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPE   90 (122)
T ss_dssp             EEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCC
Confidence            34678999999999988653 2258898743222211        011        12222    233446899999999


Q ss_pred             cCeEEEEEEEc
Q psy11549        128 DYGTLSCAAQN  138 (261)
Q Consensus       128 d~g~y~C~~~~  138 (261)
                      |++.|.|....
T Consensus        91 DtA~YYCAr~~  101 (122)
T d1vgeh1          91 DTAVYYCARDP  101 (122)
T ss_dssp             GCEEEEEEEET
T ss_pred             cceEEEEeecC
Confidence            99999997654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.19  E-value=0.0009  Score=40.10  Aligned_cols=65  Identities=15%  Similarity=0.177  Sum_probs=37.3

Q ss_pred             eCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEe--CCc---eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         72 SRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSS--GSR---GSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      ..|+.++|.|.+.+..| ...+.|.++|..............  ++.   .+.|.+.   ..+...|+|.+...
T Consensus        17 ~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~   87 (101)
T d1fnga1          17 NLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTDDFYDCEVDHW   87 (101)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECT
T ss_pred             cCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCCCEEEEEEEEC
Confidence            35778899999999854 668999998742111000001111  111   2234443   33445799999875

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.18  E-value=0.0011  Score=40.58  Aligned_cols=69  Identities=20%  Similarity=0.272  Sum_probs=44.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEeC----CceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSSG----SRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~~----~~~~~l~i~~~~~~  127 (261)
                      ..+..|++++|.|.+.+... ...+.|++-..+..++      ..          ..++.+.    .....|.|.++..+
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e   89 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE   89 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence            34678999999999987643 2268898743222211      00          1123222    23446899999999


Q ss_pred             cCeEEEEEEE
Q psy11549        128 DYGTLSCAAQ  137 (261)
Q Consensus       128 d~g~y~C~~~  137 (261)
                      |++.|.|...
T Consensus        90 DtAvYYCAr~   99 (121)
T d2p49b1          90 DTATYYCAAG   99 (121)
T ss_dssp             GCEEEEEEES
T ss_pred             ceeEEeeecc
Confidence            9999999854

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.18  E-value=0.0011  Score=40.28  Aligned_cols=68  Identities=19%  Similarity=0.230  Sum_probs=44.0

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------c---------CCceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------V---------GSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~---------~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|+|.+.+... .-.+.|++--.+..++       .         ...++.+    ......|.+.++..+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eD   90 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSED   90 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCc
Confidence            3568999999999998654 2268898732221111       0         0112222    2334578999999999


Q ss_pred             CeEEEEEEE
Q psy11549        129 YGTLSCAAQ  137 (261)
Q Consensus       129 ~g~y~C~~~  137 (261)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (117)
T d1jnhb1          91 SAVYSCSRG   99 (117)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999653

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.17  E-value=0.00055  Score=41.78  Aligned_cols=67  Identities=16%  Similarity=0.282  Sum_probs=43.0

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|++++|.|.+.+... ...+.|++-..+..++       ..         ..++..    ......|.|.++..+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eD   90 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFED   90 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCC
Confidence            3678999999999987642 1258898632221111       00         112222    2334569999999999


Q ss_pred             CeEEEEEE
Q psy11549        129 YGTLSCAA  136 (261)
Q Consensus       129 ~g~y~C~~  136 (261)
                      ++.|.|..
T Consensus        91 tAvYYCAr   98 (115)
T d1f3dh1          91 SAVYYCAN   98 (115)
T ss_dssp             CEEEEEEE
T ss_pred             cEEEEEec
Confidence            99999964

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0015  Score=39.44  Aligned_cols=73  Identities=18%  Similarity=0.348  Sum_probs=40.8

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccC-CceEEeCCc---eeEEEEecCCCC--cCeEEEEEEEcCCceEEe
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVG-SERFSSGSR---GSMLRYTPVTEL--DYGTLSCAAQNAIGTQVT  145 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~~~~---~~~l~i~~~~~~--d~g~y~C~~~~~~~~~~~  145 (261)
                      ....++|.|.+.+..+ ...+.|.+++........ ......++.   .+.|.|....-.  ....|+|.+....+....
T Consensus        20 ~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~~~~   99 (105)
T d1dn0b2          20 DTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEK   99 (105)
T ss_dssp             -CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEE
T ss_pred             CCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCCEEe
Confidence            4678899999998654 678999988753221110 011112222   224455433221  224799999987655443

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.17  E-value=0.0012  Score=40.31  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=44.7

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC---------CceEEe----CCceeEEEEecCCCCcCe
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG---------SERFSS----GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~---------~~~~~~----~~~~~~l~i~~~~~~d~g  130 (261)
                      +..|+++.|.|.+.+... ...+.|++-..+..++      ..         ..++.+    ......|.|.++..+|++
T Consensus        12 vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDtA   91 (118)
T d1lo4h1          12 VKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDTA   91 (118)
T ss_dssp             ECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcce
Confidence            568999999999998654 2368898743322221      00         112222    233457999999999999


Q ss_pred             EEEEEEEc
Q psy11549        131 TLSCAAQN  138 (261)
Q Consensus       131 ~y~C~~~~  138 (261)
                      .|.|.-..
T Consensus        92 ~YyCAr~~   99 (118)
T d1lo4h1          92 IYYCARGT   99 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEecccC
Confidence            99997543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.00055  Score=38.83  Aligned_cols=63  Identities=17%  Similarity=0.308  Sum_probs=39.8

Q ss_pred             eeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCC-CcCeEEEEEEEc
Q psy11549         71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTE-LDYGTLSCAAQN  138 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~  138 (261)
                      ...|..|.|.|.-.  ... .|.|.+++......-+.........  .|.+.+.++ +++|.|.|.+..
T Consensus         7 sISGTtV~LTCP~~--~~~-~i~W~~n~~~~~~~~~~~~~~~~~~--~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           7 SISGTTVILTCPQY--PGS-EILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEETTEEEEECSSC--TTS-CEEEEETTEEESSSCSCTTEEEETT--EEEETTCCHHHHCEEEEEEETT
T ss_pred             EEeCCEEEEECCCC--CCC-ceeeeeccccccCCCcccccccccc--eEEecccCccccCceEEEEcCC
Confidence            35799999999632  233 7999987743222111111111122  578888877 799999999864

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.15  E-value=0.0011  Score=40.55  Aligned_cols=69  Identities=16%  Similarity=0.272  Sum_probs=45.2

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+++.|.|.+.+... ...+.|++--.+..++      ..          ..++.+    ..+...|.+.++..+
T Consensus        10 ~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~e   89 (120)
T d1ad9b1          10 EVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSE   89 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCC
Confidence            34678999999999997654 2268898643222221      01          112222    234567899999999


Q ss_pred             cCeEEEEEEE
Q psy11549        128 DYGTLSCAAQ  137 (261)
Q Consensus       128 d~g~y~C~~~  137 (261)
                      |++.|.|...
T Consensus        90 DTAvYYCAr~   99 (120)
T d1ad9b1          90 DTAFYFCARE   99 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEEEEEc
Confidence            9999999754

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.15  E-value=0.0018  Score=39.79  Aligned_cols=70  Identities=17%  Similarity=0.232  Sum_probs=44.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+.++|.|.+.+... ...+.|++-..+..++      ..          ..++.+    ......|.|.++..+
T Consensus        10 ~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~e   89 (121)
T d1j05b_          10 ELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSE   89 (121)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcC
Confidence            34678999999999987543 2268898643222111      01          112222    223446999999999


Q ss_pred             cCeEEEEEEEc
Q psy11549        128 DYGTLSCAAQN  138 (261)
Q Consensus       128 d~g~y~C~~~~  138 (261)
                      |++.|.|....
T Consensus        90 DtAvYYCAr~~  100 (121)
T d1j05b_          90 DTAVYYCAPFG  100 (121)
T ss_dssp             GCEEEEEEEEB
T ss_pred             cceEEEeEeec
Confidence            99999997543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.15  E-value=0.0012  Score=39.97  Aligned_cols=68  Identities=18%  Similarity=0.258  Sum_probs=44.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cCC---------ceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VGS---------ERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~~---------~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+++.|.|.+.+... ...+.|++-..+..++       ...         .++.+    ......|.+.++..+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~e   89 (116)
T d1mjuh1          10 ELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD   89 (116)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCC
Confidence            45678999999999998654 2258898733222211       011         12222    233457889999999


Q ss_pred             cCeEEEEEE
Q psy11549        128 DYGTLSCAA  136 (261)
Q Consensus       128 d~g~y~C~~  136 (261)
                      |++.|.|.-
T Consensus        90 DtAvYYCAr   98 (116)
T d1mjuh1          90 DSAVYYCAN   98 (116)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEcc
Confidence            999999974

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.14  E-value=0.00083  Score=41.31  Aligned_cols=68  Identities=16%  Similarity=0.319  Sum_probs=43.8

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCCcC
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~d~  129 (261)
                      +..|++++|.|.+.+... ...+.|++-..+..++       ..         ..++.+    ......|.|.++..+|+
T Consensus        12 vkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eDt   91 (123)
T d1mqkh_          12 VQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSEDT   91 (123)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCcc
Confidence            568999999999987653 1258898633222111       01         112222    22344699999999999


Q ss_pred             eEEEEEEEc
Q psy11549        130 GTLSCAAQN  138 (261)
Q Consensus       130 g~y~C~~~~  138 (261)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (123)
T d1mqkh_          92 AMYYCVRHE  100 (123)
T ss_dssp             EEEEEEEEE
T ss_pred             cceeEEecC
Confidence            999997554

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00091  Score=40.21  Aligned_cols=69  Identities=16%  Similarity=0.252  Sum_probs=39.4

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEe--CCc---eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSS--GSR---GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .+..++|.|.+.+..+ ...|.|.+++..............  ++.   .+.|.|..-.-.....|+|++.....
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            4567899999998754 568999998742111111001111  111   23455544333346699999998643

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.13  E-value=0.0012  Score=40.23  Aligned_cols=71  Identities=17%  Similarity=0.222  Sum_probs=45.4

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+++.|.|.+.+... .-.+.|++--.+..++       ..         ..++.+    ......|.+.++..+
T Consensus        10 ~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   89 (118)
T d2fbjh1          10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE   89 (118)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCC
Confidence            34668999999999998754 1158888632221111       00         112222    223446899999999


Q ss_pred             cCeEEEEEEEcC
Q psy11549        128 DYGTLSCAAQNA  139 (261)
Q Consensus       128 d~g~y~C~~~~~  139 (261)
                      |++.|.|.....
T Consensus        90 DtAvYYCAr~~~  101 (118)
T d2fbjh1          90 DTALYYCARLHY  101 (118)
T ss_dssp             GCEEEEEEEEET
T ss_pred             cceEEEeeEecC
Confidence            999999986543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.12  E-value=0.0011  Score=40.93  Aligned_cols=69  Identities=19%  Similarity=0.239  Sum_probs=45.3

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|+|.+.+... ...+.|++...+..++      ..          ..++.+    ......|.|.++..+|
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eD   90 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVED   90 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCcc
Confidence            3668999999999987653 2258898743322221      00          112222    2345578999999999


Q ss_pred             CeEEEEEEEc
Q psy11549        129 YGTLSCAAQN  138 (261)
Q Consensus       129 ~g~y~C~~~~  138 (261)
                      ++.|.|....
T Consensus        91 TAvYYCAr~~  100 (125)
T d1op3h1          91 TAIYYCARKG  100 (125)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceeEeEeecc
Confidence            9999998543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.11  E-value=0.00083  Score=41.09  Aligned_cols=67  Identities=16%  Similarity=0.280  Sum_probs=43.8

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cCC----------ceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VGS----------ERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~~----------~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|.|.+.+... ...+.|++-..+..++      ...          .++.+    ......|.|.++..+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCc
Confidence            3568999999999998653 2258998643222211      011          12222    2334579999999999


Q ss_pred             CeEEEEEE
Q psy11549        129 YGTLSCAA  136 (261)
Q Consensus       129 ~g~y~C~~  136 (261)
                      ++.|.|..
T Consensus        91 TAvYYCAr   98 (119)
T d1eapb1          91 SAVYFCKR   98 (119)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEE
Confidence            99999964

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.11  E-value=0.0011  Score=40.97  Aligned_cols=70  Identities=14%  Similarity=0.224  Sum_probs=44.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|++++|.|.+.+... .-.+.|++--.+..++       ..         ..++.+    ..+...|.|.++..+
T Consensus        10 ~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~e   89 (125)
T d1rihh1          10 ELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSE   89 (125)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCcc
Confidence            34668999999999987653 1258888643222111       00         112222    233456899999999


Q ss_pred             cCeEEEEEEEc
Q psy11549        128 DYGTLSCAAQN  138 (261)
Q Consensus       128 d~g~y~C~~~~  138 (261)
                      |++.|.|....
T Consensus        90 DtAvYYCAR~~  100 (125)
T d1rihh1          90 DSAVYYCARES  100 (125)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEeeeC
Confidence            99999998543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.11  E-value=0.0014  Score=40.12  Aligned_cols=68  Identities=18%  Similarity=0.264  Sum_probs=44.4

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|.|.+.+... ...+.|++--.+..++      ..          ..++.+    ......|.|.++..+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eD   90 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCccc
Confidence            3568999999999998654 2258898643221111      01          112222    2345579999999999


Q ss_pred             CeEEEEEEE
Q psy11549        129 YGTLSCAAQ  137 (261)
Q Consensus       129 ~g~y~C~~~  137 (261)
                      ++.|.|...
T Consensus        91 TAvYYCAr~   99 (119)
T d1rz7h1          91 TAVYYCAAD   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999754

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.10  E-value=0.0021  Score=39.67  Aligned_cols=68  Identities=18%  Similarity=0.240  Sum_probs=44.8

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+++.|.|.+.+... ...+.|++--.+..++      ..          ..++.+    ......|.+.++..+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~e   88 (126)
T d1lmka1           9 ELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSE   88 (126)
T ss_dssp             EEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCC
Confidence            34668999999999998654 2258898732222211      01          112222    234557999999999


Q ss_pred             cCeEEEEEE
Q psy11549        128 DYGTLSCAA  136 (261)
Q Consensus       128 d~g~y~C~~  136 (261)
                      |++.|.|..
T Consensus        89 DTAvYYCAr   97 (126)
T d1lmka1          89 DSAVYYCAR   97 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999974

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.09  E-value=0.0016  Score=40.49  Aligned_cols=69  Identities=17%  Similarity=0.272  Sum_probs=45.0

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCcccccc---------------------CCceEEe----CCceeEEEEec
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDV---------------------GSERFSS----GSRGSMLRYTP  123 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~---------------------~~~~~~~----~~~~~~l~i~~  123 (261)
                      .+..|++++|+|.+.+... .-.+.|++-..+..++.                     ...++.+    ......|.|.+
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~   90 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS   90 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence            3568999999999997653 22689987432221110                     0012222    23355799999


Q ss_pred             CCCCcCeEEEEEEEc
Q psy11549        124 VTELDYGTLSCAAQN  138 (261)
Q Consensus       124 ~~~~d~g~y~C~~~~  138 (261)
                      +..+|++.|.|....
T Consensus        91 l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          91 LKPEDTAVYYCAAKT  105 (127)
T ss_dssp             CCGGGCEEEEEEEES
T ss_pred             ccccceeEEEEEEEe
Confidence            999999999998654

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.08  E-value=0.0015  Score=39.88  Aligned_cols=67  Identities=25%  Similarity=0.394  Sum_probs=43.5

Q ss_pred             eeCCCcEEEEEEEeeCCCC--ceeEEEEcCCccccc------c-CC--------ceEEe----CCceeEEEEecCCCCcC
Q psy11549         71 ASRSESVDIHCAVEADPPA--RSFKWKFNNSGETLD------V-GS--------ERFSS----GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~------~-~~--------~~~~~----~~~~~~l~i~~~~~~d~  129 (261)
                      +..|++++|+|.+.+....  ..+.|++.-.+..++      . ..        .++.+    ..+...|.+.++..+|+
T Consensus        12 vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eDT   91 (119)
T d1ncwh1          12 VKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTEDT   91 (119)
T ss_dssp             ECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCCc
Confidence            5689999999999987542  257898632222111      0 11        12221    23445799999999999


Q ss_pred             eEEEEEEE
Q psy11549        130 GTLSCAAQ  137 (261)
Q Consensus       130 g~y~C~~~  137 (261)
                      ..|.|...
T Consensus        92 AvYYCAr~   99 (119)
T d1ncwh1          92 ATYYCAGL   99 (119)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeEe
Confidence            99999744

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.07  E-value=0.00042  Score=41.59  Aligned_cols=67  Identities=16%  Similarity=0.318  Sum_probs=41.5

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc---------------cCCceEEe----CCceeEEEEecCCCCcCe
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD---------------VGSERFSS----GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~~~~~----~~~~~~l~i~~~~~~d~g  130 (261)
                      +..|++++|.|.+.+... .-.+.|++...+..++               ....++.+    ......|.|.++..+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            457999999999887533 2258898743222211               00112222    223457999999999999


Q ss_pred             EEEEEEE
Q psy11549        131 TLSCAAQ  137 (261)
Q Consensus       131 ~y~C~~~  137 (261)
                      .|.|...
T Consensus        85 vYyCA~~   91 (107)
T d1sjva_          85 VYYCYTH   91 (107)
T ss_dssp             EEEEEEC
T ss_pred             eeeEecc
Confidence            9999753

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.06  E-value=0.0012  Score=40.78  Aligned_cols=68  Identities=16%  Similarity=0.283  Sum_probs=44.2

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|++++|.|.+.+... .-.+.|++-..+..++      ..          ..++.+    ......|.+.++..+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eD   90 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAED   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCc
Confidence            4668999999999997653 2258898743322211      01          112222    2334578999999999


Q ss_pred             CeEEEEEEE
Q psy11549        129 YGTLSCAAQ  137 (261)
Q Consensus       129 ~g~y~C~~~  137 (261)
                      ++.|.|...
T Consensus        91 tavYYCAr~   99 (126)
T d1dfbh1          91 MALYYCVKG   99 (126)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEec
Confidence            999999754

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.05  E-value=0.0014  Score=40.71  Aligned_cols=67  Identities=19%  Similarity=0.298  Sum_probs=42.3

Q ss_pred             eeCCCcEEEEEEEeeCCC---CceeEEEEc--CCcccc----cc-C--------CceEEe----CCceeEEEEecCCCCc
Q psy11549         71 ASRSESVDIHCAVEADPP---ARSFKWKFN--NSGETL----DV-G--------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~---~~~~~W~~~--~~~~~~----~~-~--------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      +..|++++|.|.+.+...   ...+.|++-  +++...    .. .        ..++.+    ......|.|.++..+|
T Consensus        12 vkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~eD   91 (126)
T d1etzb1          12 LQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTSD   91 (126)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             ECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccccc
Confidence            557999999999987532   224679853  222110    00 0        112322    2334579999999999


Q ss_pred             CeEEEEEEE
Q psy11549        129 YGTLSCAAQ  137 (261)
Q Consensus       129 ~g~y~C~~~  137 (261)
                      ++.|.|...
T Consensus        92 tAvYyCAr~  100 (126)
T d1etzb1          92 TATYHCARR  100 (126)
T ss_dssp             CEEEEEEEE
T ss_pred             cceEEEEEe
Confidence            999999853

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.05  E-value=0.0014  Score=40.74  Aligned_cols=68  Identities=19%  Similarity=0.337  Sum_probs=44.3

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCCcC
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~d~  129 (261)
                      +..|+++.|+|.+.+... ...+.|++--.+..++      ..          ..++.+    ......|.|.++..+|+
T Consensus        12 vkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eDT   91 (135)
T d1ieha_          12 VQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSEDT   91 (135)
T ss_dssp             ECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSSC
T ss_pred             ECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcccc
Confidence            568999999999998653 2258898643222111      01          112222    22345789999999999


Q ss_pred             eEEEEEEEc
Q psy11549        130 GTLSCAAQN  138 (261)
Q Consensus       130 g~y~C~~~~  138 (261)
                      +.|.|....
T Consensus        92 AvYYCAr~~  100 (135)
T d1ieha_          92 AVYYCAKYS  100 (135)
T ss_dssp             EEEEEEEBS
T ss_pred             eeeEEEEec
Confidence            999997653

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.04  E-value=0.0018  Score=39.86  Aligned_cols=68  Identities=18%  Similarity=0.293  Sum_probs=44.0

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+++.|.|.+.+... ...+.|++-..+..++      ..          ..++.+    ......|.+.++..+
T Consensus        10 ~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~e   89 (124)
T d2b1hh1          10 EVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPS   89 (124)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeeccccc
Confidence            34578999999999998654 2258898733222211      00          112221    233457899999999


Q ss_pred             cCeEEEEEE
Q psy11549        128 DYGTLSCAA  136 (261)
Q Consensus       128 d~g~y~C~~  136 (261)
                      |++.|.|..
T Consensus        90 DTA~YYCAR   98 (124)
T d2b1hh1          90 DTALYYCAR   98 (124)
T ss_dssp             GCEEEEEEE
T ss_pred             cceEEEEee
Confidence            999999963

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.02  E-value=0.0021  Score=39.67  Aligned_cols=68  Identities=16%  Similarity=0.302  Sum_probs=44.0

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|.|.+.+... ...+.|++--.+..++       ..         ..++.+    ......|.+.++..+|
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eD   90 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCccc
Confidence            3567999999999997653 2258898643222211       00         112222    2334578999999999


Q ss_pred             CeEEEEEEE
Q psy11549        129 YGTLSCAAQ  137 (261)
Q Consensus       129 ~g~y~C~~~  137 (261)
                      ++.|.|.-.
T Consensus        91 TavYYCAR~   99 (127)
T d2fx7h1          91 TAVYYCARE   99 (127)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999854

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.02  E-value=0.0019  Score=39.66  Aligned_cols=68  Identities=16%  Similarity=0.259  Sum_probs=43.8

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|++++|.|.+.+... .-.+.|++-..+..++      ..          ..++.+    ......|.|.++..+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eD   90 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccccc
Confidence            3568999999999987643 1158898643222211      01          112222    2334579999999999


Q ss_pred             CeEEEEEEE
Q psy11549        129 YGTLSCAAQ  137 (261)
Q Consensus       129 ~g~y~C~~~  137 (261)
                      ++.|.|...
T Consensus        91 tAvYYCAr~   99 (121)
T d1ol0a_          91 TAVYYCARE   99 (121)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEEEe
Confidence            999999754

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00082  Score=40.43  Aligned_cols=69  Identities=19%  Similarity=0.279  Sum_probs=38.1

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccC-CceEEe-CCc---eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVG-SERFSS-GSR---GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~-~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .++.++|.|.+.+..+ ...+.|.+++........ ...... ++.   .+.|.|..-.-.....|+|.+.....
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS   93 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            3667899999998644 668999998742211100 011111 111   22344433222234579999998643

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.99  E-value=0.0018  Score=38.44  Aligned_cols=67  Identities=16%  Similarity=0.154  Sum_probs=36.0

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCcccccc--CCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDV--GSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .++.++|.|.+.+..+ ...+.|.+++.......  .......++..+......+...+...|+|.+...
T Consensus        15 ~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   84 (97)
T d1uvqb1          15 LNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHP   84 (97)
T ss_dssp             ----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECT
T ss_pred             CCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeC
Confidence            4667789999998765 56899999874211110  0111111222222223344556667899999875

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.99  E-value=0.0019  Score=39.63  Aligned_cols=67  Identities=16%  Similarity=0.270  Sum_probs=44.0

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|+|.+.+... ...+.|++--.+..++      ..          ..++.+    ......|.+.++..+|
T Consensus        11 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eD   90 (124)
T d1yedb1          11 LVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSED   90 (124)
T ss_dssp             EECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCc
Confidence            3668999999999998654 2258898732222211      01          112222    2345578999999999


Q ss_pred             CeEEEEEE
Q psy11549        129 YGTLSCAA  136 (261)
Q Consensus       129 ~g~y~C~~  136 (261)
                      ++.|.|..
T Consensus        91 TAvYYCAR   98 (124)
T d1yedb1          91 SAVYFCTR   98 (124)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEecc
Confidence            99999974

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.98  E-value=0.003  Score=38.57  Aligned_cols=68  Identities=18%  Similarity=0.297  Sum_probs=44.1

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------c--C----------CceEEe----CCceeEEEEecCCCC
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------V--G----------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~--~----------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +..|++++|.|.+.+... .-.+.|++-..+..++      .  .          ..++.+    ......|.|.++..+
T Consensus        12 vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~e   91 (120)
T d1dlfh_          12 VQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRAE   91 (120)
T ss_dssp             ECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccCC
Confidence            568999999999987643 2268898632222111      0  0          112322    233457899999999


Q ss_pred             cCeEEEEEEEc
Q psy11549        128 DYGTLSCAAQN  138 (261)
Q Consensus       128 d~g~y~C~~~~  138 (261)
                      |++.|.|....
T Consensus        92 DtAvYYCA~~~  102 (120)
T d1dlfh_          92 DTGIYYCTGIY  102 (120)
T ss_dssp             GCEEEEEEEEB
T ss_pred             CceEEEeeEec
Confidence            99999997544

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.98  E-value=0.0018  Score=40.00  Aligned_cols=66  Identities=27%  Similarity=0.458  Sum_probs=43.2

Q ss_pred             eeCCCcEEEEEEEeeCCC--CceeEEEEcCCccccc-------cCC--------ceEE----eCCceeEEEEecCCCCcC
Q psy11549         71 ASRSESVDIHCAVEADPP--ARSFKWKFNNSGETLD-------VGS--------ERFS----SGSRGSMLRYTPVTELDY  129 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~--~~~~~W~~~~~~~~~~-------~~~--------~~~~----~~~~~~~l~i~~~~~~d~  129 (261)
                      +..|+++.|.|.+.+...  .-.+.|++-..+..++       ...        .++.    .......|.|.++..+|+
T Consensus        12 vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eDt   91 (127)
T d3cx5j1          12 VQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTEDT   91 (127)
T ss_dssp             ECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccccc
Confidence            568999999999998653  1258898632221111       011        1121    133455799999999999


Q ss_pred             eEEEEEE
Q psy11549        130 GTLSCAA  136 (261)
Q Consensus       130 g~y~C~~  136 (261)
                      +.|.|..
T Consensus        92 AvYyCAr   98 (127)
T d3cx5j1          92 ATYYCAR   98 (127)
T ss_dssp             EEEEEEE
T ss_pred             eEEEeee
Confidence            9999974

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.98  E-value=0.0016  Score=38.90  Aligned_cols=66  Identities=17%  Similarity=0.238  Sum_probs=38.2

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------c----------CCceEEeC----CceeEEEEecCCCCcCeE
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------V----------GSERFSSG----SRGSMLRYTPVTELDYGT  131 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~----------~~~~~~~~----~~~~~l~i~~~~~~d~g~  131 (261)
                      .|++++|+|.+.+... ...+.|++-..+..++      .          ...++.+.    .....|.|.++..+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            3789999999998653 2268898643222111      0          11223322    234479999999999999


Q ss_pred             EEEEEEc
Q psy11549        132 LSCAAQN  138 (261)
Q Consensus       132 y~C~~~~  138 (261)
                      |.|....
T Consensus        81 YYCAr~~   87 (103)
T d1oari_          81 YYCARMW   87 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeEEEC
Confidence            9997543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0028  Score=35.12  Aligned_cols=59  Identities=8%  Similarity=0.218  Sum_probs=39.1

Q ss_pred             eCCCcEEEEEEEeeCCCCc-eeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEc
Q psy11549         72 SRSESVDIHCAVEADPPAR-SFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQN  138 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~  138 (261)
                      ..|..+.|.|.....+.+. --.|.+++....-  .    ...+....+.|..  .+++|.|.|....
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~e--d----~~~~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKE--D----ALPGQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEEC--T----TCCCSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccc--c----CCCCCceEEEEec--CCCCceEEEEEcC
Confidence            3688889999998776532 4679988753221  1    1122334667764  7889999999754

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.98  E-value=0.0022  Score=39.81  Aligned_cols=70  Identities=17%  Similarity=0.275  Sum_probs=45.3

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+++.|.|.+.+... ...+.|++...+..++       ..         ..++.+    ......|.+.++..+
T Consensus         9 ~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e   88 (130)
T d1rhhb1           9 EVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSD   88 (130)
T ss_dssp             EEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCC
Confidence            34678999999999997653 2268898743322221       00         112222    233446899999999


Q ss_pred             cCeEEEEEEEc
Q psy11549        128 DYGTLSCAAQN  138 (261)
Q Consensus       128 d~g~y~C~~~~  138 (261)
                      |++.|.|....
T Consensus        89 DtAvYyCAr~~   99 (130)
T d1rhhb1          89 DTAVYYCARDF   99 (130)
T ss_dssp             GCEEEEEEEEC
T ss_pred             CcEEEEEEeec
Confidence            99999998653

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.97  E-value=0.0021  Score=39.73  Aligned_cols=69  Identities=20%  Similarity=0.311  Sum_probs=45.1

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------c---------CCceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------V---------GSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~---------~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|.|.+.+... ...+.|++-..+..++       .         -..++.+    ......|.+.++..+|
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDD   90 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccC
Confidence            3678999999999998764 2257887632221111       0         0112222    2345578999999999


Q ss_pred             CeEEEEEEEc
Q psy11549        129 YGTLSCAAQN  138 (261)
Q Consensus       129 ~g~y~C~~~~  138 (261)
                      ++.|.|....
T Consensus        91 TA~YYCAr~~  100 (128)
T d2nxyd1          91 TAVYFCAGVY  100 (128)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEEeEEe
Confidence            9999999654

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.95  E-value=0.00093  Score=39.64  Aligned_cols=64  Identities=13%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEe-CCc---eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSS-GSR---GSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .++.++|.|.+.+..| ...+.|.+++.............. ++.   .+.|.+.   .++...|+|.+...
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~   83 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHS   83 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeC
Confidence            4568999999999765 558999987642111110111111 111   2234444   34555799998874

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.94  E-value=0.0026  Score=39.34  Aligned_cols=68  Identities=19%  Similarity=0.345  Sum_probs=44.3

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCCcC
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTELDY  129 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~d~  129 (261)
                      +..|++++|.|.+.+... ...+.|++--.+..++       ..         ..++.+    ......|.|.++..+|+
T Consensus        12 ~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eDT   91 (127)
T d2fb4h1          12 VQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPEDT   91 (127)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             ECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecce
Confidence            567999999999998653 2258888643222211       01         112222    23455789999999999


Q ss_pred             eEEEEEEEc
Q psy11549        130 GTLSCAAQN  138 (261)
Q Consensus       130 g~y~C~~~~  138 (261)
                      +.|.|....
T Consensus        92 A~YYCAr~~  100 (127)
T d2fb4h1          92 GVYFCARDG  100 (127)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEEEEec
Confidence            999997554

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.93  E-value=0.0029  Score=39.14  Aligned_cols=69  Identities=17%  Similarity=0.368  Sum_probs=43.5

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC--C--------ceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG--S--------ERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~--~--------~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|+|.+.+... .-.+.|++-..+..++      ..  .        .++.+    ......|.|.++..+|
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eD   89 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPED   89 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCccc
Confidence            4568999999999987654 2268898743222211      11  1        12322    2234468999999999


Q ss_pred             CeEEEEEEEc
Q psy11549        129 YGTLSCAAQN  138 (261)
Q Consensus       129 ~g~y~C~~~~  138 (261)
                      ++.|.|....
T Consensus        90 TAvYYCAr~~   99 (126)
T d1rjca1          90 TAMYYCAADT   99 (126)
T ss_dssp             CEEEEEEECC
T ss_pred             CceeEEEeec
Confidence            9999998543

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.92  E-value=0.0021  Score=39.64  Aligned_cols=68  Identities=13%  Similarity=0.264  Sum_probs=43.9

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------cC---------CceEEe----CCceeEEEEecCCCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------VG---------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~~---------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      ..+..|+++.|.|.+.+... .-.+.|++--.+..++       ..         ..++.+    ......|.+.++..+
T Consensus        10 ~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~e   89 (127)
T d1n0xh1          10 EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSA   89 (127)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             ceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCC
Confidence            44678999999999998654 1158898643222211       11         112222    233457899999999


Q ss_pred             cCeEEEEEE
Q psy11549        128 DYGTLSCAA  136 (261)
Q Consensus       128 d~g~y~C~~  136 (261)
                      |++.|.|.-
T Consensus        90 DtAvYYCAR   98 (127)
T d1n0xh1          90 DTAVYYCAR   98 (127)
T ss_dssp             GCEEEEEEE
T ss_pred             CceEEEEEe
Confidence            999999963

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.92  E-value=0.0017  Score=40.33  Aligned_cols=69  Identities=16%  Similarity=0.286  Sum_probs=44.4

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|++++|.|.+.+... ...+.|++-..+..++      ..          ..++.+    ......|.+.++..+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (130)
T d1rzga1          11 VKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSED   90 (130)
T ss_dssp             EECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCc
Confidence            3678999999999987653 2258898743222211      01          112222    2234468899999999


Q ss_pred             CeEEEEEEEc
Q psy11549        129 YGTLSCAAQN  138 (261)
Q Consensus       129 ~g~y~C~~~~  138 (261)
                      ++.|.|....
T Consensus        91 tA~YYCAr~~  100 (130)
T d1rzga1          91 TAVFYCASPY  100 (130)
T ss_dssp             CEEEEEEECC
T ss_pred             cEEEEEEEec
Confidence            9999998543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.92  E-value=0.0027  Score=39.03  Aligned_cols=69  Identities=17%  Similarity=0.253  Sum_probs=44.4

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------cC----------CceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------VG----------SERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~~----------~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|.|.+.+... .-.+.|++--.+..++      ..          ..++.+    ......|.+.++..+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eD   90 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSED   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccC
Confidence            3568999999999998653 2258998743222111      01          112222    2234578899999999


Q ss_pred             CeEEEEEEEc
Q psy11549        129 YGTLSCAAQN  138 (261)
Q Consensus       129 ~g~y~C~~~~  138 (261)
                      ++.|.|....
T Consensus        91 TAvYYCAr~~  100 (122)
T d1bz7b1          91 TAIYYCTRGG  100 (122)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeecCC
Confidence            9999997543

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=96.92  E-value=0.0023  Score=37.73  Aligned_cols=65  Identities=8%  Similarity=0.131  Sum_probs=36.5

Q ss_pred             CCCcEEEEEEEeeCC-CCceeEEEEcCCccccccCC-ceEEe--CCc---eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGS-ERFSS--GSR---GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~-~~~~~--~~~---~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+..++|.|.+.+.. ....+.|.+++......... .....  .+.   .+.|.+.   ..+...|+|.+....
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          14 SEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCGGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCCCEEEEEEEECC
Confidence            456789999999974 46689999987532211100 01111  111   2233333   333447999998754

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.91  E-value=0.0011  Score=39.85  Aligned_cols=68  Identities=15%  Similarity=0.244  Sum_probs=37.0

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCCc---eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSR---GSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      .++.++|.|.+.+..+ ...|.|..++....... ......++.   .+.|.|..-.- ..+.|+|.+......
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~-~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHT-FPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASS   90 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEE-CCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGT
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEe-cccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCC
Confidence            5678999999998654 66899965542211111 111111221   23455554433 356899999986543

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.89  E-value=0.0014  Score=40.05  Aligned_cols=69  Identities=16%  Similarity=0.216  Sum_probs=44.7

Q ss_pred             EEeeCCCcEEEEEEEeeCCC-CceeEEEEcCCcccccc--------CC--c--------eEEe----CCceeEEEEecCC
Q psy11549         69 VGASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDV--------GS--E--------RFSS----GSRGSMLRYTPVT  125 (261)
Q Consensus        69 ~~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~--------~~--~--------~~~~----~~~~~~l~i~~~~  125 (261)
                      ..+..|+++.|.|.+.+... ...+.|++-..+..++.        ..  .        ++.+    ..+...|.+.++.
T Consensus        10 ~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~   89 (121)
T d1nfdf1          10 DLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLR   89 (121)
T ss_dssp             EEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCC
T ss_pred             ceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccC
Confidence            34678999999999998764 22588987332222110        01  1        1111    2335569999999


Q ss_pred             CCcCeEEEEEEE
Q psy11549        126 ELDYGTLSCAAQ  137 (261)
Q Consensus       126 ~~d~g~y~C~~~  137 (261)
                      .+|++.|.|...
T Consensus        90 ~eDTAvYYCAr~  101 (121)
T d1nfdf1          90 VDDTAIYYCTRA  101 (121)
T ss_dssp             GGGCEECEEEEE
T ss_pred             CCcceEEEEecc
Confidence            999999999754

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.0012  Score=39.50  Aligned_cols=68  Identities=12%  Similarity=0.176  Sum_probs=39.9

Q ss_pred             CCCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEEeCCc---eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         73 RSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFSSGSR---GSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        73 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      .++.++|.|.+.+. |....|.|..++....... ......++.   .+.|.|..-.- ..+.|+|.+......
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~-~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLT-VSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSS   90 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEE-CCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGT
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCccccee-eeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCC
Confidence            57789999999985 4466899976653221111 111112222   33566654333 357899999976443

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00027  Score=44.19  Aligned_cols=24  Identities=17%  Similarity=0.213  Sum_probs=21.2

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      .+|+|.+++.+|+|.|.|.+....
T Consensus        83 ~sL~I~~v~~~DsG~Y~C~v~~~~  106 (121)
T d2g5ra1          83 CTLSIRDARMSDAGRYFFRMEKGN  106 (121)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEETT
T ss_pred             EEEEECCCChHHCEEEEEEEEeCC
Confidence            489999999999999999986543

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.0057  Score=35.88  Aligned_cols=68  Identities=19%  Similarity=0.205  Sum_probs=45.1

Q ss_pred             EEEeeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         68 IVGASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        68 ~~~~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .+.+.+|+.+.++|.++....  ++...+....... .....+..+... -++|.++...+.|.|.|.+...
T Consensus        14 ~V~v~eg~~~vIPC~vT~P~~--~VtL~~~~~~~~~-p~g~~v~~Dpk~-Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          14 IIHMTEGRELVIPCRVTSPNI--TVTLKKFPLDTLI-PDGKRIIWDSRK-GFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EEEECTTSCEEECCCBSCTTS--CCEEEETTTEEEC-CCSSSEEEETTT-EEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEeCCCCEEEEccCCCCCc--eeEEEeccCCccC-CCCCEEEECCCC-CEEEeCCCcccCeEEEEEEEEC
Confidence            377889999999999986543  4444343322222 222333333322 3899999999999999999875

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.84  E-value=0.0027  Score=38.93  Aligned_cols=68  Identities=19%  Similarity=0.304  Sum_probs=44.1

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------c-C----------CceEEe----CCceeEEEEecCCCC
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------V-G----------SERFSS----GSRGSMLRYTPVTEL  127 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~-~----------~~~~~~----~~~~~~l~i~~~~~~  127 (261)
                      +..|+++.|.|.+.+... ...+.|++-..+..++       . .          ..++.+    ......|.+.++..+
T Consensus        12 vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~e   91 (122)
T d1q9rb1          12 VQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRAE   91 (122)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeeccC
Confidence            568999999999987653 1258898642221111       0 0          112222    233457899999999


Q ss_pred             cCeEEEEEEEc
Q psy11549        128 DYGTLSCAAQN  138 (261)
Q Consensus       128 d~g~y~C~~~~  138 (261)
                      |++.|.|....
T Consensus        92 DTAvYYCar~~  102 (122)
T d1q9rb1          92 DSATYYCARDH  102 (122)
T ss_dssp             GCEEEEEEECC
T ss_pred             cceEEEEEecC
Confidence            99999998643

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.82  E-value=0.001  Score=40.57  Aligned_cols=68  Identities=24%  Similarity=0.373  Sum_probs=43.3

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc------c-CC--------ceEEe----CCceeEEEEecCCCCcCe
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD------V-GS--------ERFSS----GSRGSMLRYTPVTELDYG  130 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~------~-~~--------~~~~~----~~~~~~l~i~~~~~~d~g  130 (261)
                      +..|++++|+|.+.+... .-.+.|++-..+..++      . ..        .++.+    ......|.+.++..+|++
T Consensus        12 vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDTA   91 (116)
T d1fn4b1          12 VRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDTG   91 (116)
T ss_dssp             CCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCCE
T ss_pred             ECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCCE
Confidence            558999999999997653 2268898632222211      1 11        11111    223446888999999999


Q ss_pred             EEEEEEEc
Q psy11549        131 TLSCAAQN  138 (261)
Q Consensus       131 ~y~C~~~~  138 (261)
                      .|.|....
T Consensus        92 vYyCAr~~   99 (116)
T d1fn4b1          92 TYYCTRDL   99 (116)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEeec
Confidence            99997543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00065  Score=41.12  Aligned_cols=68  Identities=16%  Similarity=0.143  Sum_probs=38.5

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCcccccc--CCceEEeC-Cc---eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDV--GSERFSSG-SR---GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~--~~~~~~~~-~~---~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .++.++|.|.+.+..+ ...+.|.+++.......  ........ +.   .+.|.|..-.-.....|+|.+....
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   92 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA   92 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTT
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECC
Confidence            4667999999998654 56899999875321110  00011111 11   2245554333234568999999754

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.82  E-value=0.0053  Score=38.17  Aligned_cols=69  Identities=19%  Similarity=0.354  Sum_probs=44.9

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc----c------------CCceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD----V------------GSERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~----~------------~~~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|.|.+.+... .-.+.|++--.+..++    +            -..++.+    ......|.+.++..+|
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eD   89 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDD   89 (133)
T ss_dssp             EECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCC
Confidence            4678999999999997654 2258888732221111    0            0112222    2335578999999999


Q ss_pred             CeEEEEEEEc
Q psy11549        129 YGTLSCAAQN  138 (261)
Q Consensus       129 ~g~y~C~~~~  138 (261)
                      ++.|.|....
T Consensus        90 tA~YYCAr~~   99 (133)
T d1rzfh1          90 TAVYYCASNS   99 (133)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEeeecc
Confidence            9999997553

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.82  E-value=0.015  Score=35.10  Aligned_cols=65  Identities=9%  Similarity=0.051  Sum_probs=38.4

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEeC-CccceeEEE----------------ecCCCCcEEEcCCCCCCccEEE
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSA-SDLNLLVNL----------------TNLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-~~~~~~~~~----------------~~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      +....|+.++|.|..  .......+..||+.. +..+.....                .......|.|.+++++|.+.| 
T Consensus         8 vsv~~G~~vtl~C~~--s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y-   84 (110)
T d2esvd1           8 MDCAEGRAANLPCNH--STISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY-   84 (110)
T ss_dssp             EEEETTSCEEEEEEC--TTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE-
T ss_pred             EEECCCCCEEEEEEE--cCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE-
Confidence            444569999999985  332333455566643 222211111                112334689999999999999 


Q ss_pred             EEEEEE
Q psy11549        228 VVISGV  233 (261)
Q Consensus       228 ~~~~a~  233 (261)
                       .|.+.
T Consensus        85 -yCa~~   89 (110)
T d2esvd1          85 -YCIVV   89 (110)
T ss_dssp             -EEEEE
T ss_pred             -EEEEe
Confidence             66553

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.81  E-value=0.0026  Score=39.59  Aligned_cols=68  Identities=18%  Similarity=0.302  Sum_probs=44.3

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc----------cC--------CceEEe----CCceeEEEEecCCC
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD----------VG--------SERFSS----GSRGSMLRYTPVTE  126 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~----------~~--------~~~~~~----~~~~~~l~i~~~~~  126 (261)
                      .+..|++++|.|.+.+... ...+.|++-..+..++          ..        ..++.+    ..+...|.+.++..
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~   90 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKT   90 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecccc
Confidence            3568999999999987654 2258888643322211          00        112222    23345799999999


Q ss_pred             CcCeEEEEEEE
Q psy11549        127 LDYGTLSCAAQ  137 (261)
Q Consensus       127 ~d~g~y~C~~~  137 (261)
                      +|++.|.|...
T Consensus        91 eDTAvYYCAR~  101 (131)
T d3c2ah1          91 EDTAVYSCTTD  101 (131)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEecc
Confidence            99999999854

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.0012  Score=37.95  Aligned_cols=54  Identities=24%  Similarity=0.471  Sum_probs=37.5

Q ss_pred             eeCCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCC-CcCeEEEEEEE
Q psy11549         71 ASRSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTE-LDYGTLSCAAQ  137 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~  137 (261)
                      ...|..|+|.|...+.  . .|.|.+++.  .++-        .....|.+.+.++ +++|.|.|...
T Consensus        11 SISGTtV~LTCP~~~~--~-~I~Wkkn~~--~i~g--------~~~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          11 SISGTSVELTCPLDSD--E-NLKWEKNGQ--ELPQ--------KHDKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EEETTEEEEECSSCCC--T-TCEEEETTE--EECS--------CCCSEEEEESCCTTTSCEEEEEECS
T ss_pred             EEeCCEEEEECCCCCC--C-ceEEeeccc--cCCC--------CCCcEEEEccccccccCcceEEecC
Confidence            4589999999986643  2 699988763  2211        1122588888766 79999999744

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.79  E-value=0.0021  Score=38.89  Aligned_cols=68  Identities=15%  Similarity=0.176  Sum_probs=39.0

Q ss_pred             eeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCce-EEeCCc---eeEEEEecCCCCc-CeEEEEEEEcCCc
Q psy11549         71 ASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSER-FSSGSR---GSMLRYTPVTELD-YGTLSCAAQNAIG  141 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~d-~g~y~C~~~~~~~  141 (261)
                      ...+..++|.|.+.+..+ ...+.|.+++........... ...++.   .+.|.+.   .++ ...|+|.+.....
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~---~~~w~~~ytC~V~H~s~   94 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVP---EKSLDKEHRCIVRHENN   94 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEEC---TGGGGSCEEEEEEETTS
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEe---cccCCCeEEEEEEECCC
Confidence            345778999999998654 668999998753221111111 111222   2234443   333 2379999987543

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00044  Score=42.18  Aligned_cols=69  Identities=16%  Similarity=0.163  Sum_probs=38.9

Q ss_pred             eCCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCC--ceEE---e-CC---ceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         72 SRSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGS--ERFS---S-GS---RGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~--~~~~---~-~~---~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      ..++.++|.|.+.+..+ ...+.|++++.........  ....   . ++   ..+.|.|..-.......|+|.+....
T Consensus        18 ~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          18 ALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA   96 (108)
T ss_dssp             TSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             ccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEeCC
Confidence            35788999999998644 5589999887422111000  0000   0 11   12244454333234569999998753

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00082  Score=37.84  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=28.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCCcceeeeEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKGEATSNQLKLRV   55 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~~~~s~~~~l~V   55 (261)
                      .|.+..+-.+|.|.|+|.|.-..+...+.++.|.|
T Consensus        69 vLhF~pvl~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          69 VLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEeeeeeecCCCceEEecCCChhheecceEEEEe
Confidence            58899999999999999997777766566666665

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.0017  Score=38.86  Aligned_cols=68  Identities=13%  Similarity=0.198  Sum_probs=38.2

Q ss_pred             CCCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEEeCCc----eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFSSGSR----GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      ..+.++|.|.+.+. |....+.|.+++...............++    .+.|.|..-.-.....|+|.+....
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            34578999999996 55668999998742211111111111111    2344454322234568999998753

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.71  E-value=0.0042  Score=36.83  Aligned_cols=27  Identities=15%  Similarity=0.443  Sum_probs=21.5

Q ss_pred             CCcEEEEEEEeeCCC-CceeEEEEcCCc
Q psy11549         74 SESVDIHCAVEADPP-ARSFKWKFNNSG  100 (261)
Q Consensus        74 g~~~~l~C~~~~~~~-~~~~~W~~~~~~  100 (261)
                      ...++|.|.+.+..| ...+.|.+++..
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~   41 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGG   41 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSS
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCcc
Confidence            447899999999865 668999998753

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0013  Score=39.52  Aligned_cols=68  Identities=15%  Similarity=0.152  Sum_probs=38.1

Q ss_pred             CCCcEEEEEEEeeCC-CCceeEEEEcCCccccccCCceEEe-CCc---eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEADP-PARSFKWKFNNSGETLDVGSERFSS-GSR---GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~-~~~~~~W~~~~~~~~~~~~~~~~~~-~~~---~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .++.++|.|.+.+.. ....+.|.+++.............. ++.   .+.|.+..-.......|+|++....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            366789999999864 4668999998742111000111111 111   2245554332233457999999853

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.67  E-value=0.0017  Score=39.02  Aligned_cols=68  Identities=21%  Similarity=0.235  Sum_probs=38.0

Q ss_pred             CCCcEEEEEEEeeC-CCCceeEEEEcCCccccccCCceEE-eCCc---eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEAD-PPARSFKWKFNNSGETLDVGSERFS-SGSR---GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+..++|.|.+.+. |....+.|.+++............. .++.   .+.|.|..-.-.....|+|.+....
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            46789999999986 4456899999874211111111111 1111   2344444322223457999998753

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.64  E-value=0.0065  Score=37.10  Aligned_cols=63  Identities=5%  Similarity=-0.005  Sum_probs=38.3

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCcc-cee---------------EEE---ecCCCCcEEEcCCCCCCccEEEE
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDL-NLL---------------VNL---TNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~-~~~---------------~~~---~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      ..|+.++|.|...  . ....+..||+..... +..               +..   .......|+|.+++++|++.|  
T Consensus        13 ~~G~~vtL~C~~~--~-~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y--   87 (114)
T d2cdea1          13 LEGKNCTLQCNYT--V-SPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASY--   87 (114)
T ss_dssp             ETTCCCEEEEEEC--C-SCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEE--
T ss_pred             eCCCCEEEEEEEc--C-CCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCccc--
Confidence            4699999999962  2 223355666553221 111               000   112334689999999999999  


Q ss_pred             EEEEEcC
Q psy11549        229 VISGVNA  235 (261)
Q Consensus       229 ~~~a~N~  235 (261)
                      .|.+...
T Consensus        88 ~Ca~~~~   94 (114)
T d2cdea1          88 ICVVSDR   94 (114)
T ss_dssp             EEEEECS
T ss_pred             ceeeecC
Confidence            7777654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00084  Score=41.25  Aligned_cols=23  Identities=13%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      +|+|.+++.+|+|.|.|.+....
T Consensus        77 ~Lti~~l~~~Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          77 RVRMVNLQVEDSGLYQCVIYQPP   99 (113)
T ss_dssp             EEEECSCCGGGCEEEEEEECCTT
T ss_pred             EEEEccCCcccCceEEEEEECCC
Confidence            69999999999999999875443

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.61  E-value=0.00085  Score=40.71  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=19.6

Q ss_pred             CeEEEccCCCCCCEeEEEEEEe
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .+|.|.+++.+|+|.|.|.+.+
T Consensus        71 ~~L~I~~l~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          71 YSLTISSLESEDFADYYCLQYA   92 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             EEEEEhhhcccCCeEEEEecCc
Confidence            3899999999999999997654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.60  E-value=0.0046  Score=37.82  Aligned_cols=24  Identities=8%  Similarity=-0.031  Sum_probs=18.7

Q ss_pred             CcEEEcCCCCCCccEEEEEEEEEcCC
Q psy11549        211 PAFTLEDLGLDGTVLMRVVISGVNAK  236 (261)
Q Consensus       211 ~~~~i~~~~l~~~~~Y~~~~~a~N~~  236 (261)
                      ..|.|.+++++|.|.|  .|.+....
T Consensus        74 ~~L~I~~~~~~Dsg~Y--yCa~~~~~   97 (114)
T d2ak4d1          74 FNFTITASQVVDSAVY--FCALSGFY   97 (114)
T ss_dssp             EEEEESSCCGGGCEEE--EEEEECSB
T ss_pred             EEEeecccccccCCCc--eEeCCCCC
Confidence            4689999999999999  66655443

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.58  E-value=0.0014  Score=39.80  Aligned_cols=21  Identities=19%  Similarity=0.436  Sum_probs=19.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .|.|.+++.+|+|.|.|.+..
T Consensus        72 ~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          72 TLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             EEEESSCCGGGCEEEEEEECS
T ss_pred             ecEEHhheecCCceEEEEecC
Confidence            799999999999999998643

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.56  E-value=0.0013  Score=40.44  Aligned_cols=20  Identities=20%  Similarity=0.458  Sum_probs=18.7

Q ss_pred             eEEEccCCCCCCEeEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAI   40 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~   40 (261)
                      +|.|.+++.+|+|.|.|.+.
T Consensus        80 ~L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          80 FLSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EEeecccCCCCCcEEEEeEc
Confidence            79999999999999999774

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.52  E-value=0.022  Score=34.58  Aligned_cols=67  Identities=9%  Similarity=0.030  Sum_probs=39.0

Q ss_pred             CCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE------------------EEe-cCCCCcEEEcCCCC
Q psy11549        160 PQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV------------------NLT-NLDTPAFTLEDLGL  220 (261)
Q Consensus       160 p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~------------------~~~-~~~~~~~~i~~~~l  220 (261)
                      |..+.+  ..|+.++|+|...   .....+..||+........+                  ... ......|.|.++++
T Consensus         7 P~~v~v--~~G~sv~L~C~~s---~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   81 (113)
T d2bnqd1           7 PAALSV--PEGENLVLNCSFT---DSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQP   81 (113)
T ss_dssp             SSEEEE--ETTCCEEEEEEES---CCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             CCEEEE--cCCCCEEEEEEEe---cCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCC
Confidence            444444  4599999999962   22334555666422111111                  111 12335789999999


Q ss_pred             CCccEEEEEEEEE
Q psy11549        221 DGTVLMRVVISGV  233 (261)
Q Consensus       221 ~~~~~Y~~~~~a~  233 (261)
                      +|.+.|  .|.+.
T Consensus        82 ~Dsg~Y--yCa~~   92 (113)
T d2bnqd1          82 GDSATY--LCAVR   92 (113)
T ss_dssp             GGCEEE--EEEEE
T ss_pred             CCCcEE--eEeEe
Confidence            999999  55554

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.50  E-value=0.002  Score=37.98  Aligned_cols=22  Identities=23%  Similarity=0.519  Sum_probs=19.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      +|.|.+++.+|+|.|.|.+...
T Consensus        58 sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          58 SLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             EEEECSCCGGGCEEEEEEEESS
T ss_pred             eEEeeccccCcCccceeeEecC
Confidence            7999999999999999987654

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.49  E-value=0.011  Score=35.17  Aligned_cols=69  Identities=20%  Similarity=0.294  Sum_probs=38.5

Q ss_pred             CCCcEEEEEEEeeC-CC-CceeEEEEcCCccccccCCceEEeCCc---eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         73 RSESVDIHCAVEAD-PP-ARSFKWKFNNSGETLDVGSERFSSGSR---GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        73 ~g~~~~l~C~~~~~-~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .++.++|.|.+.+. |+ ...+.|.+++..............++.   .+.|.|..-.-.....|+|+|.....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            56789999999996 44 346778776542221111111111121   23455554443345689999987543

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0021  Score=38.66  Aligned_cols=69  Identities=12%  Similarity=0.177  Sum_probs=37.8

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCCc---eeEEEEecCCCCcCeEEEEEEEcCCce
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSR---GSMLRYTPVTELDYGTLSCAAQNAIGT  142 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~~  142 (261)
                      .+..++|.|.+.+..+ ...|.|..++..............++.   .+.|.|..-.. ....|+|.+.+....
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~   91 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSN   91 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGT
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCC
Confidence            3567999999988754 668999655432111111111111111   23455543322 245799999986544

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.0023  Score=38.33  Aligned_cols=66  Identities=20%  Similarity=0.218  Sum_probs=37.6

Q ss_pred             CCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEE-eCCc---eeEEEEecCCCCcCeEEEEEEEcC
Q psy11549         74 SESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFS-SGSR---GSMLRYTPVTELDYGTLSCAAQNA  139 (261)
Q Consensus        74 g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~-~~~~---~~~l~i~~~~~~d~g~y~C~~~~~  139 (261)
                      .+.++|.|.+.+..+ ...+.|.+++............. .++.   .+.|.|..-.......|+|.+...
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            467899999998765 45899999874211100011111 1111   223555543334455899999875

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.47  E-value=0.0015  Score=39.65  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=19.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      +|.|.+++.+|+|.|.|.+.+
T Consensus        72 ~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1j1pl_          72 TLSINSVETEDFGMYFCQQAN   92 (107)
T ss_dssp             EEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEcccCcCCCEEEEEEcCC
Confidence            899999999999999997643

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.46  E-value=0.0012  Score=40.05  Aligned_cols=22  Identities=18%  Similarity=0.372  Sum_probs=19.5

Q ss_pred             CeEEEccCCCCCCEeEEEEEEe
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .+|.|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          71 YTLSITSLQTEDVATYFCQQYW   92 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             EEeEEcccccccCCcEEEeecc
Confidence            3899999999999999997653

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.45  E-value=0.0031  Score=38.40  Aligned_cols=22  Identities=27%  Similarity=0.599  Sum_probs=19.6

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      +|.|.+++.+|+|.|.|.+.+.
T Consensus        76 ~L~I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          76 TLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             EEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEcccccccCccEEEeecCC
Confidence            8999999999999999976543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.45  E-value=0.0072  Score=36.97  Aligned_cols=63  Identities=8%  Similarity=0.085  Sum_probs=37.0

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEe-CCccceeEE-------------------EecCCCCcEEEcCCCCCCcc
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYS-ASDLNLLVN-------------------LTNLDTPAFTLEDLGLDGTV  224 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~-~~~~~~~~~-------------------~~~~~~~~~~i~~~~l~~~~  224 (261)
                      +....|+.++|.|.....   ...+.+||+. .+..+....                   ........|.|.+++.+|.+
T Consensus        10 v~v~~G~svtl~C~~~~~---~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg   86 (115)
T d1i9ea_          10 VTVSEGASLQLRCKYSYS---ATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSA   86 (115)
T ss_dssp             EEEETTSCEEECCEEECS---SCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCE
T ss_pred             EEECCCCCEEEEEEEcCC---CCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccccc
Confidence            333569999999985211   2235556654 222221110                   01123457999999999999


Q ss_pred             EEEEEEEE
Q psy11549        225 LMRVVISG  232 (261)
Q Consensus       225 ~Y~~~~~a  232 (261)
                      .|  .|.+
T Consensus        87 ~Y--yCa~   92 (115)
T d1i9ea_          87 VY--FCAV   92 (115)
T ss_dssp             EE--EEEE
T ss_pred             ee--cccc
Confidence            99  5544

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.013  Score=35.67  Aligned_cols=22  Identities=5%  Similarity=0.099  Sum_probs=17.6

Q ss_pred             CcEEEcCCCCCCccEEEEEEEEEc
Q psy11549        211 PAFTLEDLGLDGTVLMRVVISGVN  234 (261)
Q Consensus       211 ~~~~i~~~~l~~~~~Y~~~~~a~N  234 (261)
                      ..|.|.+++++|.+.|  .|.+..
T Consensus        73 ~~L~I~~~~~~Dsg~Y--yCa~~~   94 (114)
T d3bp5a1          73 FHMNILDTRRNDSGIY--LCGAIS   94 (114)
T ss_dssp             EEEEESSCCGGGCEEE--EEEEEC
T ss_pred             EEEEECccCcCCCeEE--EEEEEe
Confidence            3588999999999999  666643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.39  E-value=0.0014  Score=39.63  Aligned_cols=21  Identities=14%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      +|.|.+++.+|+|.|.|.+..
T Consensus        72 ~L~I~~~~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          72 VFTIENTLSEDVGDYYCLQSF   92 (106)
T ss_dssp             EEEESSCCGGGCEEEEEEECS
T ss_pred             eecccCCccccCEEEeEecCc
Confidence            799999999999999997644

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.38  E-value=0.0031  Score=38.03  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=19.6

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      +|.|.+++.+|+|.|.|.+...
T Consensus        71 ~L~I~~~~~~DsA~YyCa~~~~   92 (106)
T d1a0ql1          71 SFSISNLEPEDIATYYCLQYYN   92 (106)
T ss_dssp             EEEECSCCGGGCSEEEEEECSS
T ss_pred             eeEehhhcccCCEeEEEEEeCC
Confidence            7999999999999999987543

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.38  E-value=0.0011  Score=40.35  Aligned_cols=67  Identities=18%  Similarity=0.325  Sum_probs=42.7

Q ss_pred             EeeCCCcEEEEEEEeeCCC-CceeEEEEcCCccccc-------c-CC--------ceEEe----CCceeEEEEecCCCCc
Q psy11549         70 GASRSESVDIHCAVEADPP-ARSFKWKFNNSGETLD-------V-GS--------ERFSS----GSRGSMLRYTPVTELD  128 (261)
Q Consensus        70 ~~~~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~-------~-~~--------~~~~~----~~~~~~l~i~~~~~~d  128 (261)
                      .+..|+++.|.|.+.+... .-.+.|++--.+..++       . ..        .++.+    ......|.+.++..+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eD   90 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPED   90 (117)
T ss_dssp             EECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCc
Confidence            3678999999999986532 1267888632221111       0 01        12222    2334578999999999


Q ss_pred             CeEEEEEE
Q psy11549        129 YGTLSCAA  136 (261)
Q Consensus       129 ~g~y~C~~  136 (261)
                      ++.|.|..
T Consensus        91 TAvYYCAr   98 (117)
T d1b2wh1          91 TAVYYCAR   98 (117)
T ss_dssp             CEEEECCE
T ss_pred             ceEEEEcc
Confidence            99999964

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.0031  Score=38.12  Aligned_cols=66  Identities=23%  Similarity=0.276  Sum_probs=37.1

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceE---E-e-CCc---eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERF---S-S-GSR---GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~---~-~-~~~---~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      .+..++|.|.+.+..+ ...|.|.+++..  ........   . . ++.   .+.|.|..-.-.....|+|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~--~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSE--RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEE--ECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEE--ccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            4567899999988754 568999987642  21110000   0 0 111   2234444322223558999999754

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.36  E-value=0.0015  Score=39.71  Aligned_cols=21  Identities=14%  Similarity=0.471  Sum_probs=19.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .|.|.+++.+|+|.|.|.+..
T Consensus        73 ~L~I~~~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          73 TLTISRLEPEDFAVYYCQQYG   93 (108)
T ss_dssp             EEEESSCCGGGCSEEEEEECS
T ss_pred             EEEehHheecccEEEeeecCC
Confidence            699999999999999997643

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0049  Score=34.56  Aligned_cols=50  Identities=22%  Similarity=0.420  Sum_probs=30.5

Q ss_pred             CCCcEEEEEEEeeCCCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCcCeEEEEE
Q psy11549         73 RSESVDIHCAVEADPPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELDYGTLSCA  135 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~  135 (261)
                      .|..+.|.|...-.   ..|.|.+++.......        +.  .+++.--...|+|+|+|.
T Consensus        20 ~~~~V~L~C~t~eE---~~I~W~kd~~se~~~~--------Gn--tltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          20 PGEMVVLTCDTPEE---DGITWTLDQSSEVLGS--------GK--TLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CCEEEEEECSSSCC---SSCEEEETTCCCCCEE--------SS--EEEEEECSGGGCEEEEEE
T ss_pred             CccEEEEecCCCcc---cccEEeeCCccccccC--------CC--EEEEEEEeccCCcceeEe
Confidence            45678899954322   2699999874322111        11  355544345689999997

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.34  E-value=0.0023  Score=39.04  Aligned_cols=23  Identities=35%  Similarity=0.559  Sum_probs=19.8

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        75 ~~L~I~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          75 FTLNIHPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             hhcccccccccCCceEEEEECCC
Confidence            37999999999999999976543

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.31  E-value=0.0025  Score=38.63  Aligned_cols=21  Identities=19%  Similarity=0.450  Sum_probs=19.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      +|.|.+++.+|+|.|.|.+.+
T Consensus        72 ~L~i~~l~~~Dsa~YyCA~~~   92 (108)
T d1jhll_          72 TLTISSLEPEDFAMYICQQHN   92 (108)
T ss_dssp             EEEECSCCTTCCSEEEEEECS
T ss_pred             EeEeeeeEeccceEEEEeeCC
Confidence            799999999999999997654

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0048  Score=34.15  Aligned_cols=37  Identities=16%  Similarity=0.404  Sum_probs=23.7

Q ss_pred             CCCCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeC
Q psy11549          1 MAGGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus         1 ~~ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      +|||+.|..+.....   ...++|..  .+|+|.|.|.....
T Consensus        34 ~K~gkvl~ed~~~~~---~tey~V~~--~D~SGeY~CVFl~~   70 (80)
T d3b5ha2          34 LKGGVVLKEDALPGQ---KTEFKVDS--DDQWGEYSCVFLPE   70 (80)
T ss_dssp             ESSSEEEECTTCCCS---EEEEEECG--GGCCEEEEEEEEST
T ss_pred             eeCCEEccccCCCCC---ceEEEEec--CCCCceEEEEEcCC
Confidence            489999974322111   12456654  78999999997543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.29  E-value=0.0017  Score=39.32  Aligned_cols=22  Identities=23%  Similarity=0.472  Sum_probs=19.4

Q ss_pred             CeEEEccCCCCCCEeEEEEEEe
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~DsA~YyCa~~~   92 (107)
T d1mexl1          71 FTLTINNVQSEDLAEYFCQQYN   92 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             eeeeechhheecceeEEEeECC
Confidence            3799999999999999997643

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.0021  Score=40.02  Aligned_cols=21  Identities=43%  Similarity=0.736  Sum_probs=19.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      +|+|.+++.+|+|.|.|.+..
T Consensus        83 ~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          83 VLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcccccCCCEEEEeeEeC
Confidence            699999999999999998754

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0051  Score=37.12  Aligned_cols=65  Identities=17%  Similarity=0.255  Sum_probs=37.3

Q ss_pred             CCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEE--e---CCc---eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         74 SESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFS--S---GSR---GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        74 g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~--~---~~~---~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      ...++|.|.+.+..+ ...+.|.+++....  .......  .   ++.   .+.|.|..-.-.....|+|.+....
T Consensus        20 ~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~--~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          20 SGTASVVCLLNNFYPREAKVQWKVDNALQS--GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTEECC--SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             CCceEEEEEEEEeeCCCCEEEEEECCEECC--CCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            567899999998744 56899998874211  1111110  0   111   2245554332233458999999854

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.25  E-value=0.0023  Score=38.63  Aligned_cols=20  Identities=20%  Similarity=0.463  Sum_probs=18.4

Q ss_pred             eEEEccCCCCCCEeEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAI   40 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~   40 (261)
                      .|.|.+++.+|+|.|.|.+.
T Consensus        71 ~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          71 TLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             EEEESSCCGGGCEEEEEEEC
T ss_pred             EeEECCcChhhCCCcccccc
Confidence            89999999999999999654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.25  E-value=0.0024  Score=38.69  Aligned_cols=22  Identities=23%  Similarity=0.481  Sum_probs=19.4

Q ss_pred             CeEEEccCCCCCCEeEEEEEEe
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .+|.|.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          71 YSLTISSLEYEDMGIYYCLQYD   92 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEccccccCCcCCEEEEeeecc
Confidence            3899999999999999997644

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.24  E-value=0.0021  Score=38.85  Aligned_cols=21  Identities=19%  Similarity=0.423  Sum_probs=19.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .|.|.+++.+|+|.|.|.+..
T Consensus        71 ~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          71 TLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             EEEEESCCGGGCSEEEEEEEC
T ss_pred             EEEEccccccCCCcEeeeeCC
Confidence            799999999999999998654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.22  E-value=0.014  Score=35.56  Aligned_cols=65  Identities=6%  Similarity=0.101  Sum_probs=36.7

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCcccee-----------------E--EEe-cCCCCcEEEcCCCCCCcc
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLL-----------------V--NLT-NLDTPAFTLEDLGLDGTV  224 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~-----------------~--~~~-~~~~~~~~i~~~~l~~~~  224 (261)
                      +....|+.++|.|...  ......+..||+........                 +  ... ......|+|.+++.+|.+
T Consensus         9 v~~~~G~~Vtl~C~~~--~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1fo0a_           9 ISVMEKTTVTMDCVYE--TQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSA   86 (115)
T ss_dssp             EEEETTCCEEECCEEC--CCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEEc--CCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccc
Confidence            3345699999999852  22222244566542211111                 1  111 112346899999999999


Q ss_pred             EEEEEEEEE
Q psy11549        225 LMRVVISGV  233 (261)
Q Consensus       225 ~Y~~~~~a~  233 (261)
                      .|  .|.+.
T Consensus        87 ~Y--yCa~~   93 (115)
T d1fo0a_          87 VY--FCAMR   93 (115)
T ss_dssp             EE--EEEEE
T ss_pred             cc--cceee
Confidence            99  55544

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.22  E-value=0.015  Score=35.03  Aligned_cols=61  Identities=3%  Similarity=-0.046  Sum_probs=37.1

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EE------------------ecCCCCcEEEcCCCCCCccEEEE
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NL------------------TNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~------------------~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      ..|+.++|.|..  . .....+..||+........+ ..                  .......|.|.+++++|.+.|  
T Consensus        12 ~~G~~vtl~C~~--~-~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y--   86 (110)
T d1u3ha1          12 WEGETAILNCSY--E-NSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATY--   86 (110)
T ss_dssp             ETTSCEEEEEEE--C-CTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEE--
T ss_pred             cCCCCEEEEEEe--c-CCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeE--
Confidence            459999999986  2 23345666776532221111 00                  011234689999999999999  


Q ss_pred             EEEEE
Q psy11549        229 VISGV  233 (261)
Q Consensus       229 ~~~a~  233 (261)
                      .|.+.
T Consensus        87 yCa~~   91 (110)
T d1u3ha1          87 FCAAS   91 (110)
T ss_dssp             EECCE
T ss_pred             eeeec
Confidence            66543

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.21  E-value=0.0044  Score=38.06  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      +|+|.+++.+|+|.|.|.+....
T Consensus        77 ~L~I~~~~~~Dsg~YyCa~~~~~   99 (116)
T d1tvda_          77 HLVISPVRTEDSATYYCAFTLPP   99 (116)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTT
T ss_pred             eeeecCccccccccceeeEecCC
Confidence            79999999999999999876544

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.20  E-value=0.0079  Score=37.05  Aligned_cols=68  Identities=16%  Similarity=0.137  Sum_probs=37.3

Q ss_pred             CCCcEEEEEEEeeCCC---CceeEEEEcCCccccccCCceE-EeCCceeEEEEecCCCC---cCeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP---ARSFKWKFNNSGETLDVGSERF-SSGSRGSMLRYTPVTEL---DYGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~---d~g~y~C~~~~~~  140 (261)
                      .+..++|.|.+.+..+   ...+.|.+++............ ..++..+......+..+   ....|+|.|....
T Consensus        31 ~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~  105 (119)
T d1igtb3          31 ISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKD  105 (119)
T ss_dssp             TTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTT
T ss_pred             cCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECC
Confidence            5778999999998643   3478899887532211111111 11222111222233333   3457999999754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.20  E-value=0.023  Score=34.38  Aligned_cols=68  Identities=13%  Similarity=0.059  Sum_probs=39.5

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEeC-Ccccee---------------E-EEecCCCCcEEEcCCCCCCccEEE
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSA-SDLNLL---------------V-NLTNLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-~~~~~~---------------~-~~~~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      +....|+.++|.|...........+..||+.. +..+..               + .........+.|.+++++|.+.| 
T Consensus        10 ~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y-   88 (112)
T d1lgva1          10 VSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADY-   88 (112)
T ss_dssp             EEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEE-
T ss_pred             EEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEE-
Confidence            44567999999998521111122345566642 222111               1 11112345689999999999999 


Q ss_pred             EEEEEEc
Q psy11549        228 VVISGVN  234 (261)
Q Consensus       228 ~~~~a~N  234 (261)
                       .|.+.+
T Consensus        89 -yCa~~~   94 (112)
T d1lgva1          89 -YCSSYD   94 (112)
T ss_dssp             -EEEEEC
T ss_pred             -EEeeec
Confidence             776654

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.18  E-value=0.0044  Score=37.99  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=20.1

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      .|.|.+++.+|+|.|.|.+....
T Consensus        74 ~L~I~~~~~~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          74 HLQKSSAQLSDSALYYCALFLAS   96 (115)
T ss_dssp             CEEESSCCGGGCEEEEEEEEECS
T ss_pred             EeeccccccccCccceEEEEcCC
Confidence            69999999999999999876543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.18  E-value=0.002  Score=39.02  Aligned_cols=21  Identities=19%  Similarity=0.531  Sum_probs=18.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .|.|.+++.+|+|.|.|.+..
T Consensus        72 ~L~I~~l~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          72 TLTISTLRPEDFATYYCQQLH   92 (107)
T ss_dssp             EEEESSCCGGGCSEEEEEECS
T ss_pred             EEEeccceeCcCceEEEEECc
Confidence            799999999999999996543

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.17  E-value=0.00098  Score=40.23  Aligned_cols=69  Identities=22%  Similarity=0.289  Sum_probs=37.2

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEE-eCCc---eeEEEEecCCCCcCeEEEEEEEcCCc
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFS-SGSR---GSMLRYTPVTELDYGTLSCAAQNAIG  141 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~-~~~~---~~~l~i~~~~~~d~g~y~C~~~~~~~  141 (261)
                      .+..++|.|.+.+..+ ...|.|.+++............. .++.   .+.|.|..-.-.+...|+|.+.+...
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            3567899999998654 55899999875322111101101 1111   12233332222334579999998653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.16  E-value=0.017  Score=34.95  Aligned_cols=61  Identities=3%  Similarity=-0.025  Sum_probs=36.4

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeC-CccceeE-----------------E-EecCCCCcEEEcCCCCCCccEEEE
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSA-SDLNLLV-----------------N-LTNLDTPAFTLEDLGLDGTVLMRV  228 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-~~~~~~~-----------------~-~~~~~~~~~~i~~~~l~~~~~Y~~  228 (261)
                      ..|+.++|.|..  .. ....+.+||+.. +..+...                 . ........|.|.+++++|.+.|  
T Consensus        13 ~~G~svtl~C~~--s~-~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y--   87 (111)
T d1bd2d1          13 QEGRISILNCDY--TN-SMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVY--   87 (111)
T ss_dssp             ETTSCEEEEEEE--CC-TTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEE--
T ss_pred             cCCCCEEEEEEe--CC-CCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEE--
Confidence            469999999985  22 222355566542 2222111                 0 0112345789999999999999  


Q ss_pred             EEEEE
Q psy11549        229 VISGV  233 (261)
Q Consensus       229 ~~~a~  233 (261)
                      .|.+.
T Consensus        88 yCa~~   92 (111)
T d1bd2d1          88 FCAAM   92 (111)
T ss_dssp             EEEEE
T ss_pred             Eeecc
Confidence            66554

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=96.15  E-value=0.0034  Score=38.32  Aligned_cols=20  Identities=25%  Similarity=0.489  Sum_probs=18.3

Q ss_pred             eEEEccCCCCCCEeEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAI   40 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~   40 (261)
                      .|.|.+++.+|+|.|.|...
T Consensus        77 ~L~I~~~~~eDsAvYYC~~~   96 (112)
T d1ncwl1          77 TLKISRVEAEDLGVYYCWQG   96 (112)
T ss_dssp             EEEESSCCGGGCEEEEEEEC
T ss_pred             EEEECccccCcCEeEEEEcC
Confidence            79999999999999999653

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=96.11  E-value=0.0034  Score=37.66  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=19.5

Q ss_pred             CeEEEccCCCCCCEeEEEEEEe
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        68 ~~L~I~~l~~~Dsa~YyCA~~~   89 (103)
T d8faba1          68 VTLTISGVQAEDEADYYCQAWD   89 (103)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEE
T ss_pred             cCceEcCcchhHCceEEeeecC
Confidence            3899999999999999997654

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.10  E-value=0.0029  Score=38.46  Aligned_cols=22  Identities=14%  Similarity=0.327  Sum_probs=19.8

Q ss_pred             CeEEEccCCCCCCEeEEEEEEe
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .+|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          73 AALTITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEE
T ss_pred             eeeecCCCCccccEeEEEEccc
Confidence            3899999999999999998754

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.10  E-value=0.034  Score=33.65  Aligned_cols=63  Identities=8%  Similarity=0.063  Sum_probs=37.2

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EE-----------------ecCCCCcEEEcCCCCCCccEEEEE
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NL-----------------TNLDTPAFTLEDLGLDGTVLMRVV  229 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~i~~~~l~~~~~Y~~~  229 (261)
                      ..|+.++|.|..  ....  .+..||+........+ ..                 .......|.|.+++++|.+.|  .
T Consensus        14 ~~G~~vtl~C~~--~~~~--~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y--y   87 (113)
T d1h5ba_          14 HEGTDSALRCNF--TTTM--RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTY--F   87 (113)
T ss_dssp             ETTCCEEEEEEE--SSCC--SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEE--E
T ss_pred             cCCCCEEEEEEE--ecCC--ccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEE--E
Confidence            459999999996  3322  2455665422111111 00                 111223689999999999999  7


Q ss_pred             EEEEcCC
Q psy11549        230 ISGVNAK  236 (261)
Q Consensus       230 ~~a~N~~  236 (261)
                      |.+....
T Consensus        88 Ca~~~~~   94 (113)
T d1h5ba_          88 CAAEASS   94 (113)
T ss_dssp             EEEECSS
T ss_pred             EEecCCC
Confidence            7765443

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.009  Score=35.00  Aligned_cols=41  Identities=15%  Similarity=0.156  Sum_probs=29.9

Q ss_pred             CCeeccCCCCceEEEECCeEEEccCCCCCCEeEEEEEEeCC
Q psy11549          3 GGIPLAHNTSARIILSNQSLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus         3 ng~~l~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      ++.++.+++....-.....++|.+++..|.|.|.|.|....
T Consensus        42 ~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~g   82 (95)
T d1fltx_          42 PLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVNG   82 (95)
T ss_dssp             TTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEECC
Confidence            44455444444444556789999999999999999996653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=96.05  E-value=0.0033  Score=38.43  Aligned_cols=20  Identities=20%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             eEEEccCCCCCCEeEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAI   40 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~   40 (261)
                      +|.|.+++.+|+|.|.|.+.
T Consensus        78 ~L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          78 TLTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             EEEESSCCGGGCEEEEEEEC
T ss_pred             eEEecccccCCCeEEEeccc
Confidence            79999999999999999764

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.04  E-value=0.0029  Score=38.05  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=18.4

Q ss_pred             eEEEccCCCCCCEeEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAI   40 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~   40 (261)
                      +|.|.+++.+|+|.|.|.+.
T Consensus        70 ~L~I~~~~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          70 SLTISSMETEDAATYYCQQW   89 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEEC
T ss_pred             EEEecccCcccCCeEEEEec
Confidence            79999999999999999764

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0057  Score=37.09  Aligned_cols=24  Identities=13%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTKG   44 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~~   44 (261)
                      +|+|.+++.+|+|.|.|.......
T Consensus        73 ~lti~~L~~eDsa~YyCa~~~~~~   96 (110)
T d1u9ka_          73 QVQMTDLQVTDSGLYRCVIYHPPN   96 (110)
T ss_dssp             EEEECSCCGGGCEEEEEEEECTTS
T ss_pred             EEEECccccCCCEEEEEEEeCCCC
Confidence            699999999999999998765543

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.96  E-value=0.0011  Score=41.72  Aligned_cols=27  Identities=15%  Similarity=0.374  Sum_probs=21.7

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNS   99 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~   99 (261)
                      .+..++|.|.+.+..+ ...|.|++++.
T Consensus        19 ~~~~~tL~C~v~gf~P~~i~v~W~~~g~   46 (127)
T d1ogae2          19 HTQKATLVCLATGFYPDHVELSWWVNGK   46 (127)
T ss_dssp             HHSEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             cCCcEEEEEEEEeccCCCeEEEEEECCE
Confidence            4677899999998754 66899998774

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0026  Score=39.02  Aligned_cols=22  Identities=36%  Similarity=0.673  Sum_probs=19.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      +|.|.+++.+|+|.|.|.+...
T Consensus        78 ~L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          78 VLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET
T ss_pred             hcEEccCCCCCCEEEeEeEcCC
Confidence            7999999999999999988654

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.95  E-value=0.049  Score=33.01  Aligned_cols=65  Identities=8%  Similarity=0.010  Sum_probs=37.8

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEeC-CccceeE------------------EEe-cCCCCcEEEcCCCCCCcc
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSA-SDLNLLV------------------NLT-NLDTPAFTLEDLGLDGTV  224 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~-~~~~~~~------------------~~~-~~~~~~~~i~~~~l~~~~  224 (261)
                      +....|+.++|.|...  . ....+..||+.. +..+...                  ... ......|+|.+++++|.+
T Consensus        10 v~~~~G~~vtl~C~~s--~-~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (115)
T d1j8hd1          10 VSVSEGALVLLRCNYS--S-SVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAA   86 (115)
T ss_dssp             EEEETTSCEEECCEEE--C-SSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCE
T ss_pred             EEEcCCCCEEEEEEeC--C-CCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCc
Confidence            3345699999999862  2 122345555542 2221110                  001 122347999999999999


Q ss_pred             EEEEEEEEEc
Q psy11549        225 LMRVVISGVN  234 (261)
Q Consensus       225 ~Y~~~~~a~N  234 (261)
                      .|  .|.+..
T Consensus        87 ~Y--yCa~~~   94 (115)
T d1j8hd1          87 EY--FCAVSE   94 (115)
T ss_dssp             EE--EEEEES
T ss_pred             cc--eeeecC
Confidence            99  776654

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.94  E-value=0.0097  Score=34.19  Aligned_cols=62  Identities=10%  Similarity=0.189  Sum_probs=34.6

Q ss_pred             CcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceE-EeCCceeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         75 ESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERF-SSGSRGSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        75 ~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      ..++|.|.+.+..| .+.+.|.+++..  ........ ..++.-+.+.+.....  ...|+|.+....
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~--~~~~~~~~~~~~gtys~~s~~~~~~--~~~yTC~V~H~~   77 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKI--TEFDPAIVISPSGKYNAVKLGKYED--SNSVTCSVQHDN   77 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEE--EECCCEEEECTTSSEEEEEEEEETT--TTTCEEEEEETT
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEE--ccCcEEeeeccCCcEEEEEEEecCC--CCEEEEEEEECC
Confidence            45689999999865 558999877642  21111111 1122222233333333  346999999754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=95.90  E-value=0.0041  Score=37.76  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.4

Q ss_pred             CeEEEccCCCCCCEeEEEEEEe
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .+|.|.+++.+|+|.|.|.+..
T Consensus        74 ~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          74 FSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEECCCCHhhCEEEEEeeCC
Confidence            3799999999999999997754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.86  E-value=0.0048  Score=37.39  Aligned_cols=21  Identities=14%  Similarity=0.466  Sum_probs=19.0

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .|.|.+++.+|+|.|.|.+..
T Consensus        74 ~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          74 TFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             EEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEeeceeCcCceEEEeecC
Confidence            799999999999999998653

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.81  E-value=0.015  Score=35.30  Aligned_cols=19  Identities=26%  Similarity=0.632  Sum_probs=17.6

Q ss_pred             eEEEccCCCCCCEeEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSA   39 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~   39 (261)
                      .|.|.+++.+|+|.|.|..
T Consensus        77 ~L~Is~~~~~DsAvYyCa~   95 (112)
T d1mjul1          77 TLRISRVEAEDVGVYYCLQ   95 (112)
T ss_dssp             EEEESSCCGGGCEEEEEEE
T ss_pred             EEEECCccccCCceEEEEe
Confidence            7999999999999999954

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.80  E-value=0.016  Score=35.25  Aligned_cols=20  Identities=25%  Similarity=0.487  Sum_probs=18.4

Q ss_pred             eEEEccCCCCCCEeEEEEEE
Q psy11549         21 SLVLQKVSRQSAGTYKCSAI   40 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~   40 (261)
                      +|.|.+++.+|+|.|.|...
T Consensus        78 ~L~I~~~~~~DsavYyCa~~   97 (113)
T d1n4xl_          78 TLKISRVEAEDLGIYYCFQG   97 (113)
T ss_dssp             EEEESSCCGGGCEEEEEEEC
T ss_pred             cCccCCCCcccCEEEEEEEC
Confidence            89999999999999999654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.80  E-value=0.0014  Score=38.86  Aligned_cols=25  Identities=24%  Similarity=0.472  Sum_probs=21.5

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTKG   44 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~~   44 (261)
                      .+|.|.+++.+|+|.|.|.+....+
T Consensus        64 ~~L~I~~~~~~Dsa~YyCA~~~~~g   88 (96)
T d1ymmd1          64 SSLLITASRAADTASYFCATDTTSG   88 (96)
T ss_dssp             CCBCCSSCCSTTCSCCEEEEEETTS
T ss_pred             cccCcCCCCcccCEEEeEeEecCCC
Confidence            3799999999999999998866544

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.73  E-value=0.0057  Score=37.25  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=20.7

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeCC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      .+|.|.+++.+|+|.|.|.+....
T Consensus        71 ~~L~i~~~~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          71 FPLTLESARPSHTSQYLCASSENI   94 (112)
T ss_dssp             CCEEBSSCCTTTCSEEEEEEECSS
T ss_pred             eEeeeccccccccccEEEEEecCC
Confidence            479999999999999999876543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.016  Score=34.55  Aligned_cols=68  Identities=15%  Similarity=0.197  Sum_probs=35.6

Q ss_pred             eCCCcEEEEEEEeeCCCC---ceeEEEEcCCccccccCCce-EEeCCc----eeEEEEecCCCCcCeEEEEEEEcCC
Q psy11549         72 SRSESVDIHCAVEADPPA---RSFKWKFNNSGETLDVGSER-FSSGSR----GSMLRYTPVTELDYGTLSCAAQNAI  140 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~~---~~~~W~~~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~  140 (261)
                      ..+..++|.|.+.+..+.   ..+.|.+++.. ........ ....++    .+.|.+..-.-.....|+|.+.+..
T Consensus        14 ~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~-~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          14 FIRKSPTITCLVVDLAPSKGTVNLTWSRASGK-PVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HTTCCCEEEEEEEESSCCSSCCEEEEEETTCC-CCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             hhCCCeEEEEEEEeeECCCceEEEEEcCCCce-ecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            357788999999986552   35677776642 21111111 111111    2233332221123568999999753

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.70  E-value=0.0081  Score=36.64  Aligned_cols=23  Identities=26%  Similarity=0.511  Sum_probs=20.2

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        72 ~~L~I~~v~~~DsA~YyCA~~~~   94 (114)
T d2rhea_          72 ASLAISGLESEDEADYYCAAWND   94 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET
T ss_pred             eeeEecccCcccCceEEEeecCC
Confidence            38999999999999999987643

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.68  E-value=0.054  Score=32.60  Aligned_cols=21  Identities=5%  Similarity=0.161  Sum_probs=17.4

Q ss_pred             CcEEEcCCCCCCccEEEEEEEEE
Q psy11549        211 PAFTLEDLGLDGTVLMRVVISGV  233 (261)
Q Consensus       211 ~~~~i~~~~l~~~~~Y~~~~~a~  233 (261)
                      ..|+|.+++++|.+.|  .|.+.
T Consensus        73 ~~L~i~~~~~~Dsa~Y--yCa~~   93 (111)
T d2esve1          73 STLKVQPAELEDSGVY--FCASS   93 (111)
T ss_dssp             EEEEESSCCGGGCEEE--EEEEE
T ss_pred             EEEEECCcccCCCceE--EEeee
Confidence            4689999999999999  66554

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.67  E-value=0.011  Score=35.37  Aligned_cols=27  Identities=15%  Similarity=0.359  Sum_probs=20.5

Q ss_pred             CCCcEEEEEEEeeCCC---CceeEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP---ARSFKWKFNNS   99 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~---~~~~~W~~~~~   99 (261)
                      .+..++|.|.+.+..+   ...+.|.+++.
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~   44 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDV   44 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSC
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCc
Confidence            4667899999988544   24788998875

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.65  E-value=0.0079  Score=36.51  Aligned_cols=23  Identities=13%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        72 ~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          72 ATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEET
T ss_pred             eeeEEeeeccccCcceEEeecCC
Confidence            38999999999999999987654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.54  E-value=0.0074  Score=36.64  Aligned_cols=22  Identities=18%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      .|.|.+++.+|+|.|.|.+...
T Consensus        75 ~L~i~~l~~~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          75 SLTISGLKTEDEADYYCQSYDA   96 (111)
T ss_dssp             EEEECSCCGGGCEEEEEEEEET
T ss_pred             ccccccCCcccCcEEEEeeccC
Confidence            8999999999999999976543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.01  Score=35.57  Aligned_cols=69  Identities=14%  Similarity=0.164  Sum_probs=35.9

Q ss_pred             eCCCcEEEEEEEeeCCC---CceeEEEEcCCccccccCCceEE-eCCceeEEEEecCCCC---cCeEEEEEEEcCC
Q psy11549         72 SRSESVDIHCAVEADPP---ARSFKWKFNNSGETLDVGSERFS-SGSRGSMLRYTPVTEL---DYGTLSCAAQNAI  140 (261)
Q Consensus        72 ~~g~~~~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~---d~g~y~C~~~~~~  140 (261)
                      ..+..++|.|.+.+..+   ...+.|.+++....-........ .++..+......+..+   ..-.|+|.+....
T Consensus        16 ~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   91 (105)
T d1l6xa1          16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA   91 (105)
T ss_dssp             CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             ccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCC
Confidence            35788999999998654   24678888764211100011111 1121111222233333   3448999999754

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=95.51  E-value=0.0044  Score=37.77  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      +|+|.+++.+|+|.|.|.+...
T Consensus        66 ~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          66 SLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             EEEECSCCGGGCEEEEEEECBT
T ss_pred             eeEecCCcCccCEEEeEEEecC
Confidence            7999999999999999987544

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.49  E-value=0.011  Score=35.76  Aligned_cols=64  Identities=6%  Similarity=-0.032  Sum_probs=38.0

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEe-CCcccee---------------E-EEecCCCCcEEEcCCCCCCccEEE
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYS-ASDLNLL---------------V-NLTNLDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~-~~~~~~~---------------~-~~~~~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      +....|+.++|.|....   ....+..||+. ++..+..               + .........|+|.+++++|.+.| 
T Consensus        11 l~~~~G~svtL~C~~s~---~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~Y-   86 (109)
T d1mqkl_          11 LSASVGETVTITCRASE---NIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSY-   86 (109)
T ss_dssp             EEECTTCCEEEEEEESS---CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE-
T ss_pred             EEECCCCCEEEEEEeCC---CcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeE-
Confidence            33356999999999621   12224556654 2222211               1 11122345789999999999999 


Q ss_pred             EEEEEE
Q psy11549        228 VVISGV  233 (261)
Q Consensus       228 ~~~~a~  233 (261)
                       .|.+.
T Consensus        87 -yCA~~   91 (109)
T d1mqkl_          87 -YCQHH   91 (109)
T ss_dssp             -EEEEC
T ss_pred             -EEeee
Confidence             77654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.48  E-value=0.0056  Score=37.50  Aligned_cols=23  Identities=22%  Similarity=0.476  Sum_probs=20.2

Q ss_pred             eEEEccCCCCCCEeEEEEEEeCC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINTK   43 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~~   43 (261)
                      +|.|.+++.+|+|.|.|.+....
T Consensus        72 ~L~I~~~~~~Dsa~YyCa~~~~~   94 (115)
T d1ogad1          72 SLHITAAQPGDTGLYLCAGAGSQ   94 (115)
T ss_dssp             EEEESSCCGGGCEEEEEEEECTT
T ss_pred             eeeecCCCccceeeEcccccCCC
Confidence            79999999999999999876443

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.42  E-value=0.041  Score=33.22  Aligned_cols=65  Identities=9%  Similarity=0.077  Sum_probs=37.3

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEe-CCccce---------------eEEEec-CCCCcEEEcCCCCCCccEEE
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYS-ASDLNL---------------LVNLTN-LDTPAFTLEDLGLDGTVLMR  227 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~-~~~~~~---------------~~~~~~-~~~~~~~i~~~~l~~~~~Y~  227 (261)
                      +....|+.++|.|..  .+.....+..||+. .+..+.               .+.... .....|+|.+++++|.+.| 
T Consensus         8 ~~~~~G~svtl~C~~--s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~Y-   84 (112)
T d1kgcd1           8 MESNEEEPVHLPCNH--STISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVY-   84 (112)
T ss_dssp             EEEETTSCEEEEEEE--SCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEE-
T ss_pred             EEECCCCCEEEEEEE--eCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeE-
Confidence            344569999999985  22222234556654 222221               111111 1234689999999999999 


Q ss_pred             EEEEEE
Q psy11549        228 VVISGV  233 (261)
Q Consensus       228 ~~~~a~  233 (261)
                       .|.+.
T Consensus        85 -yCa~~   89 (112)
T d1kgcd1          85 -YCILP   89 (112)
T ss_dssp             -EEECC
T ss_pred             -eeeEe
Confidence             66543

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.38  E-value=0.11  Score=31.19  Aligned_cols=61  Identities=13%  Similarity=0.103  Sum_probs=36.7

Q ss_pred             ecCCeEEEEeecCCCCCCCeEEEEEEEe-CCccceeEE------------------E--ecCCCCcEEEcCCCCCCccEE
Q psy11549        168 ETTSSVHISCTPGYDGGLPQTFTLELYS-ASDLNLLVN------------------L--TNLDTPAFTLEDLGLDGTVLM  226 (261)
Q Consensus       168 ~~~~~~~l~c~~~~~~~~p~~~~~~~~~-~~~~~~~~~------------------~--~~~~~~~~~i~~~~l~~~~~Y  226 (261)
                      ..|+.++|.|..  ..+.  .+..||+. ++..+....                  .  .......|+|.+++++|.+.|
T Consensus        12 ~~G~svtl~C~~--~~~~--~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   87 (113)
T d2ntsp1          12 TRGQQVTLSCSP--ISGH--RSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSALY   87 (113)
T ss_dssp             ETTCCEEEEEEC--STTC--CEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEE
T ss_pred             CCCCCEEEEEEE--CCCC--CEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcccceee
Confidence            569999999985  3333  24455553 222221110                  0  112234689999999999999


Q ss_pred             EEEEEEEc
Q psy11549        227 RVVISGVN  234 (261)
Q Consensus       227 ~~~~~a~N  234 (261)
                        .|.+..
T Consensus        88 --yCA~~~   93 (113)
T d2ntsp1          88 --LCASSL   93 (113)
T ss_dssp             --EEEEES
T ss_pred             --eeeeeC
Confidence              776653

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.089  Score=31.94  Aligned_cols=20  Identities=20%  Similarity=0.195  Sum_probs=16.4

Q ss_pred             CcEEEcCCCCCCccEEEEEEEE
Q psy11549        211 PAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       211 ~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      ..|+|.+++++|.+.|  .|.+
T Consensus        77 ~~L~I~~l~~~DsavY--yCa~   96 (118)
T d1yjdc1          77 VTFYLQNLYVNQTDIY--FCKI   96 (118)
T ss_dssp             EEEEEESCCGGGCEEE--EEEE
T ss_pred             EEEEECCCCcccCeEE--EEEE
Confidence            3689999999999999  5544

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0042  Score=37.09  Aligned_cols=69  Identities=13%  Similarity=0.176  Sum_probs=38.4

Q ss_pred             eeCCCcEEEEEEEeeC--CCCceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCc---CeEEEEEEEcCC
Q psy11549         71 ASRSESVDIHCAVEAD--PPARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD---YGTLSCAAQNAI  140 (261)
Q Consensus        71 ~~~g~~~~l~C~~~~~--~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d---~g~y~C~~~~~~  140 (261)
                      +..+..++|.|.+.+.  |....|.|.+++..... ........++..+......+..++   ...|+|.|....
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~-~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~   88 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAV-QGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPE   88 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCE-ECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSS
T ss_pred             HccCCCeEEEEEEeCCCCCcceEEEEEECCceeee-ecceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCC
Confidence            3457889999999985  34558999876642211 111111112221222233444442   459999999753

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.30  E-value=0.005  Score=37.17  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEE
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAI   40 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~   40 (261)
                      .+|.|.+++.+|+|.|.|.+.
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          71 YSLTISNLEPEDIATYFCQHH   91 (107)
T ss_dssp             EEEECSCCCSCCCSEEEEEEC
T ss_pred             EEEEEeEeeecCCCcEEeeeC
Confidence            389999999999999999764

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.22  E-value=0.0072  Score=36.77  Aligned_cols=21  Identities=19%  Similarity=0.510  Sum_probs=19.3

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      +|.|.+++.+|+|.|.|.+..
T Consensus        74 ~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          74 TLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             EEEESSCCGGGCEEEEEEEES
T ss_pred             EEEECCCCcCCCEEEEEeeeC
Confidence            799999999999999998754

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.12  Score=29.67  Aligned_cols=36  Identities=11%  Similarity=0.206  Sum_probs=30.9

Q ss_pred             EEEEecCCCCcCeEEEEEEEcCCceEEeeEEEEEEe
Q psy11549        118 MLRYTPVTELDYGTLSCAAQNAIGTQVTPCLYQVVL  153 (261)
Q Consensus       118 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~v~~  153 (261)
                      +|.|..+..+|+|.|...+.+..|.......+.+.+
T Consensus        64 tLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI   99 (101)
T d1hnfa1          64 TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI   99 (101)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             cEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEe
Confidence            699999999999999999999988877666666654

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.13  E-value=0.0054  Score=37.30  Aligned_cols=67  Identities=10%  Similarity=0.226  Sum_probs=36.8

Q ss_pred             CCCcEEEEEEEeeCCC-CceeEEEEcCCccccccCCceEEeCCceeEEEEecCCCCc---CeEEEEEEEcCC
Q psy11549         73 RSESVDIHCAVEADPP-ARSFKWKFNNSGETLDVGSERFSSGSRGSMLRYTPVTELD---YGTLSCAAQNAI  140 (261)
Q Consensus        73 ~g~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d---~g~y~C~~~~~~  140 (261)
                      .+..++|.|.+.+..+ ...|.|.+++...... .......++..+......+..++   ...|+|.+....
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~-~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYKN-TPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTEEE-EEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCcEE-cccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            3567899999998755 5689997765421111 00111112222222233444443   447999999853

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.11  E-value=0.011  Score=36.08  Aligned_cols=23  Identities=13%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             CeEEEccCCCCCCEeEEEEEEeC
Q psy11549         20 QSLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        20 ~~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        72 ~~L~I~~~~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          72 FPLTVTSAQKNPTAFYLCASSSR   94 (114)
T ss_dssp             CCEEECSCCSCCCEEEEEEEESS
T ss_pred             EEEEECcCCcCCceeEEEeeccC
Confidence            37999999999999999976543

>d2hyma1 b.1.2.1 (A:1-109) Interferon-alpha/beta receptor beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Interferon-alpha/beta receptor beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.07  E-value=0.16  Score=30.34  Aligned_cols=76  Identities=13%  Similarity=0.035  Sum_probs=50.1

Q ss_pred             CCCCCcceEEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE-EE---ecCCCCcEEEcCCCCCCccEEEEEEEE
Q psy11549        157 PQPPQNCSVRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV-NL---TNLDTPAFTLEDLGLDGTVLMRVVISG  232 (261)
Q Consensus       157 p~~p~~~~v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~i~~~~l~~~~~Y~~~~~a  232 (261)
                      +..|.++++.. ..-..+|.|.++.....+..|.++|+.-+... .| ..   .......+-+....+...+.|..+|.|
T Consensus         8 ~~~P~nv~i~s-~Nf~~iL~W~p~~~s~~~~~YtVqy~~~~~~~-~W~~v~~C~~it~t~CDLT~e~~~~~~~Y~~RV~A   85 (109)
T d2hyma1           8 TDESCTFKISL-RNFRSILSWELKNHSIVPTHYTLLYTIMSKPE-DLKVVKNCANTTRSFCDLTDEWRSTHEAYVTVLEG   85 (109)
T ss_dssp             TTCCCEEEEEE-SSSCEEEEEECCCSSCCCCEEEEEEEETTCTT-CCEECSSSSSBSCSEEECTTTCCCSSSCEEEEEEE
T ss_pred             CCCCeeEEEEE-ECCceEEEECCCCCCCCCeEEEEEEEEEcccc-cCccchhhhCCCCCeEeCchhhccCCccEEEEEEE
Confidence            34566666653 45566899998555555677999987643321 22 11   233457788888667778889999999


Q ss_pred             Ec
Q psy11549        233 VN  234 (261)
Q Consensus       233 ~N  234 (261)
                      ..
T Consensus        86 ~~   87 (109)
T d2hyma1          86 FS   87 (109)
T ss_dssp             EE
T ss_pred             Ec
Confidence            74

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.04  E-value=0.019  Score=34.58  Aligned_cols=22  Identities=14%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      +|.|.+++.+|+|.|.|.+...
T Consensus        70 ~L~I~~l~~~Dsa~YyCA~~~~   91 (108)
T d1nfde1          70 TLTISGAQPEDEAAYYCLSSYG   91 (108)
T ss_dssp             EEEETTCCGGGCSEEEEEEEET
T ss_pred             eeeEcCccccCCceEEEEeecC
Confidence            8999999999999999987643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.12  Score=31.33  Aligned_cols=67  Identities=15%  Similarity=0.063  Sum_probs=38.3

Q ss_pred             EEeecCCeEEEEeecCCCCCCCeEEEEEEEeCCccceeE--E------------------EecCCCCcEEEcCCCCCCcc
Q psy11549        165 VRNETTSSVHISCTPGYDGGLPQTFTLELYSASDLNLLV--N------------------LTNLDTPAFTLEDLGLDGTV  224 (261)
Q Consensus       165 v~~~~~~~~~l~c~~~~~~~~p~~~~~~~~~~~~~~~~~--~------------------~~~~~~~~~~i~~~~l~~~~  224 (261)
                      +....|..++|.|...........+..||+........+  .                  ........|.|.+++.+|.+
T Consensus         9 ~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   88 (117)
T d1dqta_           9 VLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTG   88 (117)
T ss_dssp             EECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCE
Confidence            344568999999985222223333455666432221111  0                  01123357899999999999


Q ss_pred             EEEEEEE
Q psy11549        225 LMRVVIS  231 (261)
Q Consensus       225 ~Y~~~~~  231 (261)
                      .|.|.+.
T Consensus        89 ~YyCa~~   95 (117)
T d1dqta_          89 LYLCKVE   95 (117)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9944443

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.94  E-value=0.015  Score=35.84  Aligned_cols=21  Identities=19%  Similarity=0.343  Sum_probs=18.8

Q ss_pred             eEEEccCCCCCCEeEEEEEEe
Q psy11549         21 SLVLQKVSRQSAGTYKCSAIN   41 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~   41 (261)
                      .|.|.+++.+|+|.|.|....
T Consensus        80 ~L~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          80 ILTIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EEEECSCCGGGCSEEEEEECC
T ss_pred             cccccccccccceeEEEEEcC
Confidence            599999999999999997643

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=94.91  E-value=0.012  Score=35.57  Aligned_cols=22  Identities=18%  Similarity=0.510  Sum_probs=19.9

Q ss_pred             eEEEccCCCCCCEeEEEEEEeC
Q psy11549         21 SLVLQKVSRQSAGTYKCSAINT   42 (261)
Q Consensus        21 ~L~i~~~~~~D~G~Y~C~~~~~   42 (261)
                      +|.|.+++.+|+|.|.|.+...
T Consensus        71 ~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          71 TLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             EEEESSCCGGGCEEEEEEEEET
T ss_pred             ceEEeeeccCCCEEEEEEecCC
Confidence            8999999999999999987654