Psyllid ID: psy11552

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710----
Protein Sequence
MWSITVLISARIRTITFNLSVTNTRVVHYTTTLQSSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRRS
Secondary Structure (PSIPRED)
cccEEEEEHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHccEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHccccHHHHHHHHcEEEEEEccccccEEEEccccccEEEEEEccEEEEEEEccEEEEEEEcccccccccccccccccccccEEEccccccccEEEEEcccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHccHHccccEEEEEccccHHHHHHHHHccccccccHHHHHHHHHHHHHcccEEEcccccEEEccHHccccccEEEEEEEccccEEEEcccHHHHHHHHHHccccHHccHHHHHHHHHHHHHcccEEEccccccccccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccHHHHHHHHcccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccEEEEEccccccEEEEEEEcEEEEEEccccEEEEEcccccccEEEEEcccccccEEEEEEEEcccccEEEEEEEcccEEEEEEccEEEEccccccHHHHEcccHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHcHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHEEEEEccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccccccHHHHHHHHHccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MWSITVLISARIRTITFNLSVTNTRVVHYTTtlqsspsvpmaRAGWVLRTLLlndesgtlrdrktsggrtIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGviyhgkiscfffsetetipmerIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCIlynfwqdkegsssqaTAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERqigkpldrtsEDLEQIYEELLhlkplhhlsnsVRRELAGVVMfeahprkgeilfhqgdegksWYIIIQGSVDVVIYGKGcvtslyagedfgklalvnnaprLIITSMVFhqgdegksWYIIIQGSVDVVIYGKGcvtslyagedfgklalvnnapsyqLHMYLEQMAVYFtttapdikgprrykfrgpnrfqQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLtwdklpskskkTYTELEALIDPSKNHRAYRQAVSklqspvipfmpLLLKDLafthdgnktVVDGLVNFEKMHMFAQTLRTLRYCRtrhldhdktvVDGLVNFEKMHMFAQTLRTLRYCrtrhlvldpptpkcesEVKSYVSCLRAMDNQRILTSmsqkleprrs
Flexible Loop (DISEMBL)
MWSITVLISARIrtitfnlsvtntRVVHYtttlqsspsvpmARAGWVLRTlllndesgtlrdrktsggrtiarRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQlkklqnrylpreyMLHLEreiedkeeeekeeeeeerqigkpldrtsEDLEQIYEELLhlkplhhlsNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSltwdklpskskKTYTELEAlidpsknhRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLvldpptpkcesEVKSYVSCLRAMDnqriltsmsqkleprrs
Low Complexity Region (SEG)
MWSITVLISARIRTITFNLSVTNTRVVHYTTTLQSSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEGSSSQATAQDIaeaeehleeallalaRRAPDAILRYILRKQLKKLQNRYLPREYMLHLereiedkeeeekeeeeeerQIGKPLDRTSEDLEQIYEEllhlkplhhlSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRRS
Disordered region (IsUnstruct)
*WSITVLISARIRTITFNLSVTNTRVVHYTTTLQSSPSVPMARAGWVLRTLLLNDE*************TIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ*********************EEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHL*********************************QIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLP******YTELEALI*******AYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAM******************
Disordered Region (DISOPRED)
**SITVLISARIRTIT************************MARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEG***********EAEEHLEEALLALARRAPDAILRY**************************EDKEEEEKEEEEE*********RTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP***********************************************LALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHM*********************************SCLRAMDNQRILTSMSQKLEPR**
Disordered Region (DISEMBL)
MWSITVLISARIRTITFNLSVTNTRVVHYTTTLQSSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQDK************AEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLEREI******************KPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSM*********
Disordered Region (DISPRO)
MWSITVLISARIRTITFNLSVTNTRVVHYTTTLQSSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQ***************IEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRT*HLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSM***L*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MWSITVLISARIRTITFNLSVTNTRVVHYTTTLQSSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYxxxxxxxxxxxxxxxxxxxxxxxxIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	714	2.2.26 [Sep-21-2011]
Q8WZA2	1011	Rap guanine nucleotide ex	no	N/A	0.298	0.210	0.532	2e-71
Q9EQZ6	1011	Rap guanine nucleotide ex	yes	N/A	0.298	0.210	0.524	8e-71
Q9Z1C7	436	Rap guanine nucleotide ex	no	N/A	0.298	0.488	0.516	3e-69
Q8C0Q9	814	Rap guanine nucleotide ex	no	N/A	0.277	0.243	0.480	4e-59
P83900	580	Rap guanine nucleotide ex	no	N/A	0.277	0.341	0.480	5e-59
Q92565	580	Rap guanine nucleotide ex	no	N/A	0.275	0.339	0.484	1e-58
Q9Z1C8	926	Rap guanine nucleotide ex	no	N/A	0.322	0.248	0.475	1e-56
Q8VCC8	918	Rap guanine nucleotide ex	no	N/A	0.394	0.307	0.413	3e-56
O95398	923	Rap guanine nucleotide ex	no	N/A	0.322	0.249	0.475	1e-53
P34578	1038	Rap guanine nucleotide ex	yes	N/A	0.273	0.187	0.433	6e-50

>sp|Q8WZA2|RPGF4_HUMAN Rap guanine nucleotide exchange factor 4 OS=Homo sapiens GN=RAPGEF4 PE=1 SV=1

 Score =  270 bits (691), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/246 (53%), Positives = 170/246 (69%), Gaps = 33/246 (13%)

Query: 468  YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
            Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+CKEY
Sbjct: 798  YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHCKEY 857

Query: 528  RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
            +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+KL+
Sbjct: 858  KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVAKLE 917

Query: 588  SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
             P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct: 918  PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 977

Query: 648  GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                             K   +V+SYV  L  +DNQR L+ MS 
Sbjct: 978  ---------------------------------KNHQDVRSYVRQLNVIDNQRTLSQMSH 1004

Query: 708  KLEPRR 713
            +LEPRR
Sbjct: 1005 RLEPRR 1010

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP1B and RAP2A small GTPases that is activated by binding cAMP. Seems not to activate RAB3A. Involved in cAMP-dependent, PKA-independent exocytosis through interaction with RIMS2.
Homo sapiens (taxid: 9606)

>sp|Q9EQZ6|RPGF4_MOUSE Rap guanine nucleotide exchange factor 4 OS=Mus musculus GN=Rapgef4 PE=1 SV=1

 Score =  268 bits (686), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 129/246 (52%), Positives = 169/246 (68%), Gaps = 33/246 (13%)

Query: 468  YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
            Y   G + F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+CKEY
Sbjct: 798  YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY 857

Query: 528  RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
            +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +KL+
Sbjct: 858  KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLE 917

Query: 588  SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
             P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct: 918  PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 977

Query: 648  GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                             K   +V+SYV  L  +DNQR L+ MS 
Sbjct: 978  ---------------------------------KNHQDVRSYVRQLNVIDNQRTLSQMSH 1004

Query: 708  KLEPRR 713
            +LEPRR
Sbjct: 1005 RLEPRR 1010

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP1B and RAP2A small GTPases that is activated by binding cAMP. Seems not to activate RAB3A. Involved in cAMP-dependent, PKA-independent exocytosis through interaction with RIMS2.

Mus musculus (taxid: 10090)

>sp|Q9Z1C7|RPGF4_RAT Rap guanine nucleotide exchange factor 4 (Fragment) OS=Rattus norvegicus GN=Rapgef4 PE=2 SV=1

 Score =  263 bits (673), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/246 (51%), Positives = 167/246 (67%), Gaps = 33/246 (13%)

Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+CKEY
Sbjct: 223 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKCIKIAAHCKEY 282

Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+N+ F ++MGLSNVA SRL+LTW+KLPSK KK Y E E+L+DPS+NH+AYR   +KL+
Sbjct: 283 KNLNSFFGIVMGLSNVAESRLALTWEKLPSKFKKFYAEFESLMDPSRNHKAYRLTAAKLE 342

Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
            P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct: 343 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 402

Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                            K   +V+SYV  L  +DNQR L+ MS 
Sbjct: 403 ---------------------------------KNHQDVRSYVRQLNVIDNQRTLSQMSH 429

Query: 708 KLEPRR 713
           +LEPRR
Sbjct: 430 RLEPRR 435

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP1B and RAP2A small GTPases that is activated by binding cAMP. Seems not to activate RAB3A. Involved in cAMP-dependent, PKA-independent exocytosis through interaction with RIMS2.

Rattus norvegicus (taxid: 10116)

>sp|Q8C0Q9|RPGF5_MOUSE Rap guanine nucleotide exchange factor 5 OS=Mus musculus GN=Rapgef5 PE=2 SV=2

 Score =  229 bits (585), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 112/233 (48%), Positives = 151/233 (64%), Gaps = 35/233 (15%)

Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           T NL + L+R NE+Q WV TEILL + L KRVQ+++K IK+AA+CK  +N+N+ FA++MG
Sbjct: 616 TVNLSLLLQRCNEVQLWVATEILLCSQLGKRVQLVKKFIKIAAHCKAQQNLNSFFAIVMG 675

Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLK 599
           L+  +VSRLS TW+K+P K KK ++ELE+L DPS NH+AYR A  K++ P IPFMPLLLK
Sbjct: 676 LNTASVSRLSQTWEKIPGKFKKLFSELESLTDPSLNHKAYRDAFKKMKPPKIPFMPLLLK 735

Query: 600 DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFA 659
           D+ F H+GNKT +D LVNFEK+HM A T+RTLR+CRT     D                 
Sbjct: 736 DVTFIHEGNKTFLDNLVNFEKLHMIADTVRTLRHCRTNQFGSD----------------- 778

Query: 660 QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPR 712
                              +PK + E+KSYV+ L  +D+Q+ L  +S +LEPR
Sbjct: 779 ------------------VSPKEQQELKSYVNHLYVIDSQQALFELSHRLEPR 813

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP2A and MRAS/M-Ras-GTP. Its association with MRAS inhibits Rap1 activation.

Mus musculus (taxid: 10090)

>sp|P83900|RPGF5_RAT Rap guanine nucleotide exchange factor 5 OS=Rattus norvegicus GN=Rapgef5 PE=2 SV=1

 Score =  229 bits (584), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 112/233 (48%), Positives = 151/233 (64%), Gaps = 35/233 (15%)

Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           T NL + L+R NE+Q WV TEILL + L KRVQ+++K IK+AA+CK  +N+N+ FA++MG
Sbjct: 382 TVNLSLLLQRCNEVQLWVATEILLCSQLGKRVQLVKKFIKIAAHCKAQQNLNSFFAIVMG 441

Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLK 599
           L+  +VSRLS TW+K+P K KK ++ELE+L DPS NH+AYR A  K++ P IPFMPLLLK
Sbjct: 442 LNTASVSRLSQTWEKIPGKFKKLFSELESLTDPSLNHKAYRDAFKKMKPPKIPFMPLLLK 501

Query: 600 DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFA 659
           D+ F H+GNKT +D LVNFEK+HM A T+RTLR+CRT     D                 
Sbjct: 502 DVTFIHEGNKTFLDNLVNFEKLHMIADTVRTLRHCRTNQFGSDM---------------- 545

Query: 660 QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPR 712
                              +PK + E+KSYV+ L  +D+Q+ L  +S +LEPR
Sbjct: 546 -------------------SPKEQQELKSYVNHLYVIDSQQALFELSHRLEPR 579

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP2A and MRAS/M-Ras-GTP. Its association with MRAS inhibits Rap1 activation.

Rattus norvegicus (taxid: 10116)

>sp|Q92565|RPGF5_HUMAN Rap guanine nucleotide exchange factor 5 OS=Homo sapiens GN=RAPGEF5 PE=1 SV=1

 Score =  228 bits (581), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/233 (48%), Positives = 152/233 (65%), Gaps = 36/233 (15%)

Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           TANL + L+R NE+Q WV TEILL + L KRVQ+++K IK+AA+CK  RN+N+ FA++MG
Sbjct: 383 TANLSLLLQRCNEVQLWVATEILLCSQLGKRVQLVKKFIKIAAHCKAQRNLNSFFAIVMG 442

Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLK 599
           L+  +VSRLS TW+K+P K KK ++ELE+L DPS NH+AYR A  K++ P IPFMPLLLK
Sbjct: 443 LNTASVSRLSQTWEKIPGKFKKLFSELESLTDPSLNHKAYRDAFKKMKPPKIPFMPLLLK 502

Query: 600 DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFA 659
           D+ F H+GNKT +D LVNFEK+HM A T+RTLR+CRT                   + F 
Sbjct: 503 DVTFIHEGNKTFLDNLVNFEKLHMIADTVRTLRHCRT-------------------NQFG 543

Query: 660 QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPR 712
                              +PK   E+KSYV+ L  +D+Q+ L  +S ++EPR
Sbjct: 544 DL-----------------SPKEHQELKSYVNHLYVIDSQQALFELSHRIEPR 579

Guanine nucleotide exchange factor (GEF) for RAP1A, RAP2A and MRAS/M-Ras-GTP. Its association with MRAS inhibits Rap1 activation.

Homo sapiens (taxid: 9606)

>sp|Q9Z1C8|RPGF3_RAT Rap guanine nucleotide exchange factor 3 OS=Rattus norvegicus GN=Rapgef3 PE=2 SV=2

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 115/242 (47%), Positives = 159/242 (65%), Gaps = 12/242 (4%)

Query: 472 GPNRFQQIT-ANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNI 530
           GP   + +T ANL+ F+RRFNE+QYWV TE+ L      R Q+LRK IKLAA+ KE +N+
Sbjct: 695 GPQHLRDVTTANLERFMRRFNELQYWVATELCLCPVPGPRAQLLRKFIKLAAHLKEQKNL 754

Query: 531 NALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPV 590
           N+ FAV+ GLSN A+SRL+ TW++LP K +K Y+ LE L+DPS NHR YR A++KL  PV
Sbjct: 755 NSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERLLDPSWNHRVYRLALTKLSPPV 814

Query: 591 IPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLV 650
           IPFMPLLLKD+ F H+GN T+V+ L+NFEKM M A+ +R L +CR+    H    +  L 
Sbjct: 815 IPFMPLLLKDMTFIHEGNHTLVENLINFEKMRMMARAVRMLHHCRS----HSTAPLSPLR 870

Query: 651 N-FEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKL 709
           +    +H  +Q  R +  C  + L    P     +   +YV  L+ +DNQR L+ +S++L
Sbjct: 871 SRVSHIHEDSQASR-ISTCSEQSLSTRSP-----ASTWAYVQQLKVIDNQRELSRLSREL 924

Query: 710 EP 711
           EP
Sbjct: 925 EP 926

Guanine nucleotide exchange factor (GEF) for RAP1A and RAP2A small GTPases that is activated by binding cAMP.

Rattus norvegicus (taxid: 10116)

>sp|Q8VCC8|RPGF3_MOUSE Rap guanine nucleotide exchange factor 3 OS=Mus musculus GN=Rapgef3 PE=2 SV=2

 Score =  220 bits (560), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/312 (41%), Positives = 185/312 (59%), Gaps = 30/312 (9%)

Query: 417 GKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTT-------APDIKGP-RRY 468
            +G  TSL   E   +L +V+    ++L  + EQ+     ++       A D+ G    +
Sbjct: 620 ARGVATSLGLNE---RLFVVDPQEVHELTPHPEQLGPTLGSSEMLDLVSAKDLAGQLTDH 676

Query: 469 KFRGPNRFQQI--------TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL 520
            +   NR  Q+        TANL+ F+RRFNE+QYWV TE+ L      R Q+LRK IKL
Sbjct: 677 DWNLFNRIHQVQEHLRDVTTANLERFMRRFNELQYWVATELCLCPVPGSRAQLLRKFIKL 736

Query: 521 AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYR 580
           AA+ KE +N+N+ FAV+ GLSN A+SRL+ TW++LP K +K Y+ LE L+DPS NHR YR
Sbjct: 737 AAHLKEQKNLNSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERLLDPSWNHRVYR 796

Query: 581 QAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLD 640
            A++KL  PVIPFMPLLLKD+ F H+GN T+V+ L+NFEKM M A+ +R L +CR+    
Sbjct: 797 LALTKLSPPVIPFMPLLLKDVTFIHEGNHTLVENLINFEKMRMMARAVRMLHHCRS---- 852

Query: 641 HDKTVVDGLVN-FEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQ 699
           H    +  L +    +H  +Q  R +  C  + L    P     +   +YV  L+ +DNQ
Sbjct: 853 HSTAPLSPLRSRVSHIHEDSQGSR-ISTCSEQSLSTRSP-----ASTWAYVQQLKVIDNQ 906

Query: 700 RILTSMSQKLEP 711
           R L+ +S++LEP
Sbjct: 907 RELSRLSRELEP 918

Guanine nucleotide exchange factor (GEF) for RAP1A and RAP2A small GTPases that is activated by binding cAMP.

Mus musculus (taxid: 10090)

>sp|O95398|RPGF3_HUMAN Rap guanine nucleotide exchange factor 3 OS=Homo sapiens GN=RAPGEF3 PE=1 SV=6

 Score =  211 bits (538), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/242 (47%), Positives = 159/242 (65%), Gaps = 12/242 (4%)

Query: 472 GPNRFQQIT-ANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNI 530
           GP   + +T ANL+ F+RRFNE+QYWV TE+ L      R Q+LRK IKLAA+ KE +N+
Sbjct: 692 GPQHLRDVTTANLERFMRRFNELQYWVATELCLCPVPGPRAQLLRKFIKLAAHLKEQKNL 751

Query: 531 NALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPV 590
           N+ FAV+ GLSN A+SRL+ TW++LP K +K Y+ LE L+DPS NHR YR A++KL  PV
Sbjct: 752 NSFFAVMFGLSNSAISRLAHTWERLPHKVRKLYSALERLLDPSWNHRVYRLALAKLSPPV 811

Query: 591 IPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLV 650
           IPFMPLLLKD+ F H+GN T+V+ L+NFEKM M A+  R L +CR+    H+   +  L 
Sbjct: 812 IPFMPLLLKDMTFIHEGNHTLVENLINFEKMRMMARAARMLHHCRS----HNPVPLSPLR 867

Query: 651 N-FEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKL 709
           +    +H  +Q  R +  C  + L    P     +   +YV  L+ +DNQR L+ +S++L
Sbjct: 868 SRVSHLHEDSQVAR-ISTCSEQSLSTRSP-----ASTWAYVQQLKVIDNQRELSRLSREL 921

Query: 710 EP 711
           EP
Sbjct: 922 EP 923

Guanine nucleotide exchange factor (GEF) for RAP1A and RAP2A small GTPases that is activated by binding cAMP.

Homo sapiens (taxid: 9606)

>sp|P34578|RPGF1_CAEEL Rap guanine nucleotide exchange factor 1 OS=Caenorhabditis elegans GN=epac-1 PE=4 SV=3

 Score =  199 bits (506), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 101/233 (43%), Positives = 147/233 (63%), Gaps = 38/233 (16%)

Query: 482  NLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLS 541
            NLD+ +RRFNE+Q+W  TEILL T  N R++IL+K I +A   +EYR++  +FA+ +GLS
Sbjct: 836  NLDLLVRRFNEVQHWSTTEILLATEEN-RMEILKKFISIATIAREYRDLLTVFAITLGLS 894

Query: 542  NVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDL 601
            + ++SRL+LTW KLP  S KT++ELE L+DP++NHR YR  VSK+ SP IPF+PL+LKDL
Sbjct: 895  HTSISRLTLTWSKLPPASLKTFSELENLLDPTRNHRMYRLLVSKMSSPYIPFVPLILKDL 954

Query: 602  AFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQT 661
             F H GNK+  +GLVNFEKMHMFA+  R+ R C+++ +D+                    
Sbjct: 955  MFIHQGNKSFYNGLVNFEKMHMFAKIFRSFRQCKSQ-MDNG------------------- 994

Query: 662  LRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRRS 714
                      H  ++P         +S +  LR +DNQ+ L  +S ++EP+ +
Sbjct: 995  --------AEHEFIEP---------QSLIRNLRVIDNQKKLMQLSYEIEPKSA 1030

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	714
270013336	883	hypothetical protein TcasGA2_TC011926 [T	0.298	0.241	0.651	6e-89
189241119	1019	PREDICTED: similar to AGAP007307-PA [Tri	0.298	0.209	0.651	1e-88
328717287	1004	PREDICTED: rap guanine nucleotide exchan	0.292	0.208	0.650	3e-85
157125916	1047	camp-dependent rap1 guanine-nucleotide e	0.298	0.203	0.603	2e-84
158285893	998	AGAP007307-PA [Anopheles gambiae str. PE	0.298	0.213	0.595	2e-83
170065617	896	c-AMP-dependent rap1 guanine-nucleotide	0.298	0.237	0.578	7e-82
195028554	954	GH20138 [Drosophila grimshawi] gi|193903	0.296	0.222	0.573	5e-79
195331917	950	GM20851 [Drosophila sechellia] gi|194124	0.296	0.223	0.581	5e-79
194864014	946	GG10800 [Drosophila erecta] gi|190662594	0.296	0.224	0.581	6e-79
321471019	816	hypothetical protein DAPPUDRAFT_210921 [	0.298	0.261	0.570	7e-79

>gi|270013336|gb|EFA09784.1| hypothetical protein TcasGA2_TC011926 [Tribolium castaneum]

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 161/247 (65%), Positives = 189/247 (76%), Gaps = 34/247 (13%)

Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G + F QITANLDVFLRRFNEIQ+WV+TEI + TSL+KRV +LRK IKLAAYCKEY
Sbjct: 671 YHTFGRHHFGQITANLDVFLRRFNEIQFWVVTEICMTTSLSKRVALLRKFIKLAAYCKEY 730

Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+NA  A++MGLSNVAVSRLSLTW+KLPSK +K YTE E+LIDPS+NHRAYR +V KLQ
Sbjct: 731 QNLNAFCAIVMGLSNVAVSRLSLTWEKLPSKFRKLYTEFESLIDPSRNHRAYRVSVGKLQ 790

Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
            PV+PFMPLLLKD+ FTH+GNKT +DGLVNFEKMHM AQT+RT+R+CR            
Sbjct: 791 PPVVPFMPLLLKDMTFTHEGNKTSLDGLVNFEKMHMLAQTMRTIRFCR------------ 838

Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                 +RHLVL+PP+PK E EVKSY+SCLR +DNQR+LTSMSQ
Sbjct: 839 ----------------------SRHLVLEPPSPKSEGEVKSYISCLRVIDNQRVLTSMSQ 876

Query: 708 KLEPRRS 714
           KLEPRRS
Sbjct: 877 KLEPRRS 883

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241119|ref|XP_972857.2| PREDICTED: similar to AGAP007307-PA [Tribolium castaneum]

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 161/247 (65%), Positives = 189/247 (76%), Gaps = 34/247 (13%)

Query: 468  YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
            Y   G + F QITANLDVFLRRFNEIQ+WV+TEI + TSL+KRV +LRK IKLAAYCKEY
Sbjct: 807  YHTFGRHHFGQITANLDVFLRRFNEIQFWVVTEICMTTSLSKRVALLRKFIKLAAYCKEY 866

Query: 528  RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
            +N+NA  A++MGLSNVAVSRLSLTW+KLPSK +K YTE E+LIDPS+NHRAYR +V KLQ
Sbjct: 867  QNLNAFCAIVMGLSNVAVSRLSLTWEKLPSKFRKLYTEFESLIDPSRNHRAYRVSVGKLQ 926

Query: 588  SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
             PV+PFMPLLLKD+ FTH+GNKT +DGLVNFEKMHM AQT+RT+R+CR            
Sbjct: 927  PPVVPFMPLLLKDMTFTHEGNKTSLDGLVNFEKMHMLAQTMRTIRFCR------------ 974

Query: 648  GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                  +RHLVL+PP+PK E EVKSY+SCLR +DNQR+LTSMSQ
Sbjct: 975  ----------------------SRHLVLEPPSPKSEGEVKSYISCLRVIDNQRVLTSMSQ 1012

Query: 708  KLEPRRS 714
            KLEPRRS
Sbjct: 1013 KLEPRRS 1019

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328717287|ref|XP_001947549.2| PREDICTED: rap guanine nucleotide exchange factor 4-like, partial [Acyrthosiphon pisum]

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 158/243 (65%), Positives = 180/243 (74%), Gaps = 34/243 (13%)

Query: 472  GPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNIN 531
            G +RFQQITANLD+FLRRFNEIQYWVITEI    +++KR  IL+KMIKLA YCKEY N N
Sbjct: 796  GRHRFQQITANLDIFLRRFNEIQYWVITEICTSQNISKRTNILKKMIKLATYCKEYYNFN 855

Query: 532  ALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVI 591
            A FA+LMGLS+VAVSRLS TWDKLPSKS+K +TE E LIDPS+NHRAYR  V KL SP+I
Sbjct: 856  AFFAILMGLSDVAVSRLSTTWDKLPSKSRKQFTEYETLIDPSRNHRAYRITVGKLPSPMI 915

Query: 592  PFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVN 651
            PFMPLL+KD+ FTHDGNKT V+GLVNFEKMHM AQT+RTLRYCR                
Sbjct: 916  PFMPLLIKDMKFTHDGNKTHVNGLVNFEKMHMLAQTMRTLRYCR---------------- 959

Query: 652  FEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEP 711
                               RHLVLDPP  K E++VKSYVSCLR ++N+R L SMSQKLEP
Sbjct: 960  ------------------ARHLVLDPPVSKNEADVKSYVSCLRCVNNERTLMSMSQKLEP 1001

Query: 712  RRS 714
            RR+
Sbjct: 1002 RRT 1004

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125916|ref|XP_001660814.1| camp-dependent rap1 guanine-nucleotide exchange factor [Aedes aegypti] gi|108873480|gb|EAT37705.1| AAEL010328-PA [Aedes aegypti]

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 149/247 (60%), Positives = 186/247 (75%), Gaps = 34/247 (13%)

Query: 468  YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
            Y   G + F +IT+NLDVF+RRFNEIQYWV+TEI+  ++L KR+ +++K IKLAA+CKEY
Sbjct: 835  YHTFGRHHFNKITSNLDVFIRRFNEIQYWVVTEIVSTSNLTKRMSLVKKFIKLAAFCKEY 894

Query: 528  RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
            +N+NA FA++MGLSN+AVSRLS TWDKLPSK +K +TE EALIDPS+NHRAYR +V KLQ
Sbjct: 895  QNLNAFFAIVMGLSNMAVSRLSQTWDKLPSKFRKLFTEYEALIDPSRNHRAYRMSVGKLQ 954

Query: 588  SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
             PVIPFMPLLLKD+ F H+GNKT +DGLVNFEKMHM AQT+RT+RYCR            
Sbjct: 955  PPVIPFMPLLLKDMTFAHEGNKTSLDGLVNFEKMHMMAQTMRTVRYCR------------ 1002

Query: 648  GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                  +RHLVLDPP+PK E+E++ Y+SC R +DNQR+LT+MSQ
Sbjct: 1003 ----------------------SRHLVLDPPSPKNENEIRQYISCFRTIDNQRVLTAMSQ 1040

Query: 708  KLEPRRS 714
            K+EPRRS
Sbjct: 1041 KVEPRRS 1047

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285893|ref|XP_308514.4| AGAP007307-PA [Anopheles gambiae str. PEST] gi|157020208|gb|EAA45423.4| AGAP007307-PA [Anopheles gambiae str. PEST]

 Score =  317 bits (812), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 147/247 (59%), Positives = 184/247 (74%), Gaps = 34/247 (13%)

Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G + F +IT+NLDVF+RRFNEIQYWV+TEI+  T+L KR+ +++K IKLAA+CKEY
Sbjct: 786 YHTFGRHHFNKITSNLDVFIRRFNEIQYWVVTEIVSTTNLTKRMSLVKKFIKLAAFCKEY 845

Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+NA FA++MGLSN AVSRLS+TWDKLPSK +K +TE EALIDPS+NHRAYR +V KLQ
Sbjct: 846 QNLNAFFAIVMGLSNTAVSRLSMTWDKLPSKFRKLFTEYEALIDPSRNHRAYRMSVGKLQ 905

Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
            PVIPFMPLLLKD+ F H+GNKT +DGLVNFEKMHM AQT+R +R+CR            
Sbjct: 906 PPVIPFMPLLLKDMTFAHEGNKTSLDGLVNFEKMHMMAQTMRAVRFCR------------ 953

Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                 +RHLVLDPP+PK E+E+++Y+ C R +DNQR+L SMSQ
Sbjct: 954 ----------------------SRHLVLDPPSPKNENEIRNYIRCFRTIDNQRVLNSMSQ 991

Query: 708 KLEPRRS 714
           K+EPRRS
Sbjct: 992 KVEPRRS 998

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170065617|ref|XP_001868014.1| c-AMP-dependent rap1 guanine-nucleotide exchange factor [Culex quinquefasciatus] gi|167862556|gb|EDS25939.1| c-AMP-dependent rap1 guanine-nucleotide exchange factor [Culex quinquefasciatus]

 Score =  311 bits (798), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 143/247 (57%), Positives = 185/247 (74%), Gaps = 34/247 (13%)

Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G + F +IT+NLDVF+RRFNEIQYWV+TEI+  ++L KR+ +++K IKLAA+CKEY
Sbjct: 684 YHTFGRHHFNKITSNLDVFIRRFNEIQYWVVTEIVSTSNLTKRMSLVKKFIKLAAFCKEY 743

Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+NA FA++MGLSN+AVSRL+ TWDKLPSK +K ++E EALIDPS+NHRAYR +V KLQ
Sbjct: 744 QNLNAFFAIVMGLSNMAVSRLTQTWDKLPSKFRKLFSEYEALIDPSRNHRAYRMSVGKLQ 803

Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
            PVIPFMPLLLKD+ F H+GNKT +DGLVNFEKMHM AQT+R++R+CR            
Sbjct: 804 PPVIPFMPLLLKDMTFAHEGNKTSLDGLVNFEKMHMMAQTMRSVRFCR------------ 851

Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                 +RHLVLDPP+PK E+E++ Y+SC R +DNQR+L +MSQ
Sbjct: 852 ----------------------SRHLVLDPPSPKNENELRQYISCFRTIDNQRVLNAMSQ 889

Query: 708 KLEPRRS 714
           ++EPRRS
Sbjct: 890 RVEPRRS 896

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028554|ref|XP_001987141.1| GH20138 [Drosophila grimshawi] gi|193903141|gb|EDW02008.1| GH20138 [Drosophila grimshawi]

 Score =  302 bits (773), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 141/246 (57%), Positives = 179/246 (72%), Gaps = 34/246 (13%)

Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G + F +ITANLDVFLRRFNE+QYW++ E++   SL+KRV ++RK IKLAAYCKEY
Sbjct: 740 YHTFGRHHFGKITANLDVFLRRFNEVQYWIVAELVSTPSLSKRVGLVRKFIKLAAYCKEY 799

Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+NA FA++MGLSN+AVSR+  TW+K+PSK +K + E EALIDPS+NHRAYR  V KLQ
Sbjct: 800 QNLNAFFAIVMGLSNMAVSRMHQTWEKIPSKFRKIFQEFEALIDPSRNHRAYRVFVGKLQ 859

Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
            P+IPFMPLLLKD+ F H+GNKT +DGLVNFEKMHM AQT+RT+R+CR+R+L        
Sbjct: 860 PPLIPFMPLLLKDMTFAHEGNKTSLDGLVNFEKMHMMAQTMRTIRFCRSRNLG------- 912

Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                      L+PP+PK E EV+SY+SC R +DNQR+LT+MSQ
Sbjct: 913 ---------------------------LEPPSPKSEGEVRSYISCFRVIDNQRVLTAMSQ 945

Query: 708 KLEPRR 713
           K+EP R
Sbjct: 946 KVEPTR 951

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195331917|ref|XP_002032645.1| GM20851 [Drosophila sechellia] gi|194124615|gb|EDW46658.1| GM20851 [Drosophila sechellia]

 Score =  302 bits (773), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 178/246 (72%), Gaps = 34/246 (13%)

Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G + F +ITANLDVFLRRFNE+QYW++TE++   SL+KRV ++RK IKLAAYCKEY
Sbjct: 737 YHTFGRHHFGKITANLDVFLRRFNEVQYWIVTELVSTPSLSKRVGLVRKFIKLAAYCKEY 796

Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+NA FAV+MGLSN+AVSRL  TW+K+PSK +K + E EALIDPS+NHRAYR  V KLQ
Sbjct: 797 QNLNAFFAVVMGLSNMAVSRLQQTWEKIPSKFRKIFQEFEALIDPSRNHRAYRVFVGKLQ 856

Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
            P+IPFMPLLLKD+ F H+GNKT +DGLVNFEKMHM AQT+RT+R+CR+R L        
Sbjct: 857 PPLIPFMPLLLKDMTFAHEGNKTSLDGLVNFEKMHMMAQTMRTIRFCRSRSLG------- 909

Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                      L+PP+PK E EV+SY+S  R +DNQR+LT+MSQ
Sbjct: 910 ---------------------------LEPPSPKSEGEVRSYISSFRVIDNQRVLTAMSQ 942

Query: 708 KLEPRR 713
           K+EP R
Sbjct: 943 KVEPTR 948

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194864014|ref|XP_001970727.1| GG10800 [Drosophila erecta] gi|190662594|gb|EDV59786.1| GG10800 [Drosophila erecta]

 Score =  301 bits (772), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 178/246 (72%), Gaps = 34/246 (13%)

Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G + F +ITANLDVFLRRFNE+QYW++TE++   SL+KRV ++RK IKLAAYCKEY
Sbjct: 733 YHTFGRHHFGKITANLDVFLRRFNEVQYWIVTELVSTPSLSKRVGLVRKFIKLAAYCKEY 792

Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+NA FAV+MGLSN+AVSRL  TW+K+PSK +K + E EALIDPS+NHRAYR  V KLQ
Sbjct: 793 QNLNAFFAVVMGLSNMAVSRLQQTWEKIPSKFRKIFQEFEALIDPSRNHRAYRVFVGKLQ 852

Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
            P+IPFMPLLLKD+ F H+GNKT +DGLVNFEKMHM AQT+RT+R+CR+R L        
Sbjct: 853 PPLIPFMPLLLKDMTFAHEGNKTSLDGLVNFEKMHMMAQTMRTIRFCRSRSLG------- 905

Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                      L+PP+PK E EV+SY+S  R +DNQR+LT+MSQ
Sbjct: 906 ---------------------------LEPPSPKSEGEVRSYISSFRVIDNQRVLTAMSQ 938

Query: 708 KLEPRR 713
           K+EP R
Sbjct: 939 KVEPTR 944

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471019|gb|EFX81993.1| hypothetical protein DAPPUDRAFT_210921 [Daphnia pulex]

 Score =  301 bits (772), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 142/249 (57%), Positives = 182/249 (73%), Gaps = 36/249 (14%)

Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G   F++I +NLD+FLRRFNEIQYWV+TEI L  +L KRVQ+LRK IKLAAYCKE+
Sbjct: 602 YHVAGAQPFRKIKSNLDLFLRRFNEIQYWVVTEICLANTLGKRVQLLRKFIKLAAYCKEF 661

Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+NA FA++MGLSNVAVSRL+ TW++LPSK +K +TE + LI+PS+NHRAYR AV KLQ
Sbjct: 662 QNLNAFFALVMGLSNVAVSRLTQTWERLPSKLRKMFTEFDGLIEPSRNHRAYRIAVGKLQ 721

Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVD--GLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTV 645
            P++PFMPLLLKD+ FTH+GN+T++D  GL+NFEKMHM AQT+RTLRYC           
Sbjct: 722 PPILPFMPLLLKDMTFTHEGNRTLLDSAGLINFEKMHMLAQTMRTLRYC----------- 770

Query: 646 VDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSM 705
                                  R+R L+L PPTP+ E EV++Y+  LR +DNQRILT +
Sbjct: 771 -----------------------RSRQLLLQPPTPRSEQEVRNYIRNLRVIDNQRILTGL 807

Query: 706 SQKLEPRRS 714
           SQ+LEP+R+
Sbjct: 808 SQRLEPKRA 816

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	714
FB|FBgn0085421	998	Epac "Exchange protein directl	0.240	0.172	0.686	3.3e-116
UNIPROTKB|B7Z283	858	RAPGEF4 "cDNA, FLJ78971, highl	0.281	0.234	0.576	7.2e-109
UNIPROTKB|B7Z3T6	840	RAPGEF4 "Rap guanine nucleotid	0.281	0.239	0.576	7.2e-109
UNIPROTKB|B7Z278	791	RAPGEF4 "cDNA FLJ50956, highly	0.281	0.254	0.576	7.2e-109
UNIPROTKB|F1S067	836	RAPGEF4 "Uncharacterized prote	0.281	0.240	0.576	1.9e-108
UNIPROTKB|F1P0M8	1034	RAPGEF4 "Uncharacterized prote	0.281	0.194	0.576	2.4e-108
UNIPROTKB|F1LNE3	836	Rapgef4 "Rap guanine nucleotid	0.281	0.240	0.571	1.7e-107
UNIPROTKB|J9P4R7	858	RAPGEF4 "Uncharacterized prote	0.281	0.234	0.571	5.7e-107
UNIPROTKB|E7EVE5	1010	RAPGEF4 "Rap guanine nucleotid	0.281	0.199	0.576	8e-107
UNIPROTKB|Q8WZA2	1011	RAPGEF4 "Rap guanine nucleotid	0.281	0.198	0.576	8.2e-107

FB|FBgn0085421 Epac "Exchange protein directly activated by cAMP ortholog (H. sapiens)" [Drosophila melanogaster (taxid:7227)]

 Score = 644 (231.8 bits), Expect = 3.3e-116, Sum P(3) = 3.3e-116
 Identities = 118/172 (68%), Positives = 145/172 (84%)

Query:   468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
             Y   G + F +ITANLDVFLRRFNE+QYW++TE++   SL+KRV ++RK IKLAAYCKEY
Sbjct:   785 YHTFGRHHFGKITANLDVFLRRFNEVQYWIVTELVSTPSLSKRVGLVRKFIKLAAYCKEY 844

Query:   528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
             +N+NA FAV+MGLSN+AVSRL  TW+K+PSK +K + E EALIDPS+NHRAYR  V KLQ
Sbjct:   845 QNLNAFFAVVMGLSNMAVSRLQQTWEKIPSKFRKIFQEFEALIDPSRNHRAYRVFVGKLQ 904

Query:   588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHL 639
              P+IPFMPLLLKD+ F H+GNKT +DGLVNFEKMHM AQT+RT+R+CR+R L
Sbjct:   905 PPLIPFMPLLLKDMTFAHEGNKTSLDGLVNFEKMHMMAQTMRTIRFCRSRSL 956

GO:0017132 "cyclic nucleotide-dependent guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0017034 "Rap guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0001932 "regulation of protein phosphorylation" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|B7Z283 RAPGEF4 "cDNA, FLJ78971, highly similar to Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 625 (225.1 bits), Expect = 7.2e-109, Sum P(3) = 7.2e-109
 Identities = 117/203 (57%), Positives = 156/203 (76%)

Query:   468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
             Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+CKEY
Sbjct:   645 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHCKEY 704

Query:   528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
             +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+KL+
Sbjct:   705 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVAKLE 764

Query:   588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
              P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct:   765 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 824

Query:   648 GLVNFEKMHMFAQTLRTLRYCRT 670
                N + +  + + L  +   RT
Sbjct:   825 K--NHQDVRSYVRQLNVIDNQRT 845

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017016 "Ras GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

UNIPROTKB|B7Z3T6 RAPGEF4 "Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 625 (225.1 bits), Expect = 7.2e-109, Sum P(3) = 7.2e-109
 Identities = 117/203 (57%), Positives = 156/203 (76%)

Query:   468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
             Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+CKEY
Sbjct:   627 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHCKEY 686

Query:   528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
             +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+KL+
Sbjct:   687 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVAKLE 746

Query:   588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
              P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct:   747 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 806

Query:   648 GLVNFEKMHMFAQTLRTLRYCRT 670
                N + +  + + L  +   RT
Sbjct:   807 K--NHQDVRSYVRQLNVIDNQRT 827

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|B7Z278 RAPGEF4 "cDNA FLJ50956, highly similar to Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 625 (225.1 bits), Expect = 7.2e-109, Sum P(3) = 7.2e-109
 Identities = 117/203 (57%), Positives = 156/203 (76%)

Query:   468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
             Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+CKEY
Sbjct:   578 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHCKEY 637

Query:   528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
             +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+KL+
Sbjct:   638 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVAKLE 697

Query:   588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
              P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct:   698 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 757

Query:   648 GLVNFEKMHMFAQTLRTLRYCRT 670
                N + +  + + L  +   RT
Sbjct:   758 K--NHQDVRSYVRQLNVIDNQRT 778

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017016 "Ras GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

UNIPROTKB|F1S067 RAPGEF4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 627 (225.8 bits), Expect = 1.9e-108, Sum P(3) = 1.9e-108
 Identities = 117/203 (57%), Positives = 155/203 (76%)

Query:   468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
             Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L +  +KRVQ+L+K IK+AA+CKEY
Sbjct:   623 YHTFGRHHFKKTTANLDLFLRRFNEIQFWVVTEICLCSQPSKRVQLLKKFIKIAAHCKEY 682

Query:   528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
             +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+KL 
Sbjct:   683 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVAKLD 742

Query:   588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
              P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RYCR++  + D    +
Sbjct:   743 PPLIPFMPLLIKDMTFTHEGNKTFIDSLVNFEKMRMIANTARTVRYCRSQPFNPDAAQAN 802

Query:   648 GLVNFEKMHMFAQTLRTLRYCRT 670
                N + +  + + L  +   RT
Sbjct:   803 K--NHQDVRSYVRQLNVIDNQRT 823

GO:0030552 "cAMP binding" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0017016 "Ras GTPase binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

UNIPROTKB|F1P0M8 RAPGEF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 638 (229.6 bits), Expect = 2.4e-108, Sum P(3) = 2.4e-108
 Identities = 117/203 (57%), Positives = 158/203 (77%)

Query:   468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
             Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+CKEY
Sbjct:   821 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKYIKIAAHCKEY 880

Query:   528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
             +N+N+ FA++MGLSNVAVSRLSLTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+KL 
Sbjct:   881 KNLNSFFAIIMGLSNVAVSRLSLTWEKLPSKFKKIYAEFESLMDPSRNHRAYRLTVAKLD 940

Query:   588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
              P+IPFMPLL+KD+ FTH+GNKT+ D LVNFEKM M A T+RT+++CR++  + D  + +
Sbjct:   941 PPIIPFMPLLIKDMTFTHEGNKTLTDNLVNFEKMRMIANTVRTVKFCRSQSFNPDAALAN 1000

Query:   648 GLVNFEKMHMFAQTLRTLRYCRT 670
                N + +  + + L  +   RT
Sbjct:  1001 K--NHQDVRSYVRQLNVIDNQRT 1021

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017016 "Ras GTPase binding" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

UNIPROTKB|F1LNE3 Rapgef4 "Rap guanine nucleotide exchange factor 4" [Rattus norvegicus (taxid:10116)]

 Score = 621 (223.7 bits), Expect = 1.7e-107, Sum P(3) = 1.7e-107
 Identities = 116/203 (57%), Positives = 155/203 (76%)

Query:   468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
             Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+CKEY
Sbjct:   623 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHCKEY 682

Query:   528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
             +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +KL+
Sbjct:   683 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLE 742

Query:   588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
              P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct:   743 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 802

Query:   648 GLVNFEKMHMFAQTLRTLRYCRT 670
                N + +  + + L  +   RT
Sbjct:   803 K--NHQDVRSYVRQLNVIDNQRT 823

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|J9P4R7 RAPGEF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 625 (225.1 bits), Expect = 5.7e-107, Sum P(3) = 5.7e-107
 Identities = 116/203 (57%), Positives = 156/203 (76%)

Query:   468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
             Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L +  +KRVQ+L+K IK+AA+CKEY
Sbjct:   645 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQPSKRVQLLKKFIKIAAHCKEY 704

Query:   528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
             +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+KL+
Sbjct:   705 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVAKLE 764

Query:   588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
              P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+R+CR++  + D    +
Sbjct:   765 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRFCRSQPFNPDAAQAN 824

Query:   648 GLVNFEKMHMFAQTLRTLRYCRT 670
                N + +  + + L  +   RT
Sbjct:   825 K--NHQDVRSYVRQLNVIDNQRT 845

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|E7EVE5 RAPGEF4 "Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 625 (225.1 bits), Expect = 8.0e-107, Sum P(3) = 8.0e-107
 Identities = 117/203 (57%), Positives = 156/203 (76%)

Query:   468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
             Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+CKEY
Sbjct:   797 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHCKEY 856

Query:   528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
             +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+KL+
Sbjct:   857 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVAKLE 916

Query:   588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
              P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct:   917 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 976

Query:   648 GLVNFEKMHMFAQTLRTLRYCRT 670
                N + +  + + L  +   RT
Sbjct:   977 K--NHQDVRSYVRQLNVIDNQRT 997

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q8WZA2 RAPGEF4 "Rap guanine nucleotide exchange factor 4" [Homo sapiens (taxid:9606)]

 Score = 625 (225.1 bits), Expect = 8.2e-107, Sum P(3) = 8.2e-107
 Identities = 117/203 (57%), Positives = 156/203 (76%)

Query:   468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
             Y   G + F++ TANLD+FLRRFNEIQ+WV+TEI L + L+KRVQ+L+K IK+AA+CKEY
Sbjct:   798 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEICLCSQLSKRVQLLKKFIKIAAHCKEY 857

Query:   528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
             +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR  V+KL+
Sbjct:   858 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTVAKLE 917

Query:   588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
              P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct:   918 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 977

Query:   648 GLVNFEKMHMFAQTLRTLRYCRT 670
                N + +  + + L  +   RT
Sbjct:   978 K--NHQDVRSYVRQLNVIDNQRT 998

GO:0005952 "cAMP-dependent protein kinase complex" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0008603 "cAMP-dependent protein kinase regulator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017156 "calcium ion-dependent exocytosis" evidence=IEA

GO:0017157 "regulation of exocytosis" evidence=IEA

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0030073 "insulin secretion" evidence=IEA

GO:0005088 "Ras guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0030552 "cAMP binding" evidence=ISS

GO:0017016 "Ras GTPase binding" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=TAS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006112 "energy reserve metabolic process" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0050796 "regulation of insulin secretion" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	714
smart00147	242	smart00147, RasGEF, Guanine nucleotide exchange fa	3e-61
pfam00617	185	pfam00617, RasGEF, RasGEF domain	3e-60
cd00155	237	cd00155, RasGEF, Guanine nucleotide exchange facto	4e-58
cd04437	125	cd04437, DEP_Epac, DEP (Dishevelled, Egl-10, and P	2e-30
cd04437	125	cd04437, DEP_Epac, DEP (Dishevelled, Egl-10, and P	2e-18
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	9e-12
cd04371	81	cd04371, DEP, DEP domain, named after Dishevelled,	1e-10
pfam00610	74	pfam00610, DEP, Domain found in Dishevelled, Egl-1	3e-10
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	7e-10
smart00049	77	smart00049, DEP, Domain found in Dishevelled, Egl-	1e-09
pfam00610	74	pfam00610, DEP, Domain found in Dishevelled, Egl-1	3e-09
cd04371	81	cd04371, DEP, DEP domain, named after Dishevelled,	3e-08
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	3e-08
cd04443	83	cd04443, DEP_GPR155, DEP (Dishevelled, Egl-10, and	1e-06
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	2e-06
smart00049	77	smart00049, DEP, Domain found in Dishevelled, Egl-	2e-06
cd04439	81	cd04439, DEP_1_P-Rex, DEP (Dishevelled, Egl-10, an	6e-06
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	1e-05
cd04441	85	cd04441, DEP_2_DEP6, DEP (Dishevelled, Egl-10, and	2e-05
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	3e-05
pfam12072	201	pfam12072, DUF3552, Domain of unknown function (DU	7e-04
cd04448	81	cd04448, DEP_PIKfyve, DEP (Dishevelled, Egl-10, an	0.001
cd04442	82	cd04442, DEP_1_DEP6, DEP (Dishevelled, Egl-10, and	0.001
cd04444	109	cd04444, DEP_PLEK2, DEP (Dishevelled, Egl-10, and	0.003
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	0.003

>gnl|CDD|214539 smart00147, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases

 Score =  205 bits (523), Expect = 3e-61
 Identities = 76/198 (38%), Positives = 113/198 (57%), Gaps = 13/198 (6%)

Query: 467 RYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE 526
              +   ++      NL+ F+RRFNE+  WV TEIL  T+   R ++L K I++A +C+E
Sbjct: 31  GSVWGKRSKKSPSPLNLEAFIRRFNEVSNWVATEILKQTTPKDRAELLSKFIQVAKHCRE 90

Query: 527 YRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKL 586
             N N+L A++  LS+  +SRL  TW+KLPSK KK + ELE L+ P +N++ YR+A+S  
Sbjct: 91  LNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNYKNYREALSSC 150

Query: 587 -QSPVIPFMPLLLKDLAFTHDGNKTVV-DGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKT 644
              P IPF+ +LLKDL F  +GN   + +GLVNFEK    A+ LR +R  +++       
Sbjct: 151 NLPPCIPFLGVLLKDLTFIDEGNPDFLENGLVNFEKRRQIAEILREIRQLQSQPY----- 205

Query: 645 VVDGLVNFEKMHMFAQTL 662
                 N        Q+L
Sbjct: 206 ------NLRPNRSDIQSL 217

Length = 242

>gnl|CDD|216025 pfam00617, RasGEF, RasGEF domain

 Score =  200 bits (510), Expect = 3e-60
 Identities = 65/151 (43%), Positives = 97/151 (64%), Gaps = 1/151 (0%)

Query: 474 NRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINAL 533
            +  +++ N++ F+ RFN++  WV TEIL    L KR ++++K IK+A +C+E  N N+L
Sbjct: 35  KKDSKLSPNIEAFISRFNQLSRWVATEILSEEDLKKRAKVIKKFIKIAQHCRELNNFNSL 94

Query: 534 FAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPF 593
            A++ GL++  +SRL  TW+ +  K KK   ELE L+ PSKN + YR+A+ K   P IPF
Sbjct: 95  MAIISGLNSSPISRLKKTWELVSKKYKKLLEELEELMSPSKNFKNYREALKKANPPCIPF 154

Query: 594 MPLLLKDLAFTHDGNKTVVD-GLVNFEKMHM 623
           + L LKDL F  +GN   +D GL+NFEK   
Sbjct: 155 LGLYLKDLTFIEEGNPDFLDNGLINFEKRRK 185

Guanine nucleotide exchange factor for Ras-like small GTPases. Length = 185

>gnl|CDD|238087 cd00155, RasGEF, Guanine nucleotide exchange factor for Ras-like small GTPases

 Score =  196 bits (501), Expect = 4e-58
 Identities = 72/188 (38%), Positives = 114/188 (60%), Gaps = 5/188 (2%)

Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           + NL+ F+ RFN +  WV +EILL T+  KR ++L K I++A +C+E  N N+L A++  
Sbjct: 44  SPNLERFIERFNNLSNWVASEILLCTNPKKRARLLSKFIQVAKHCRELNNFNSLMAIVSA 103

Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKL--QSPVIPFMPLL 597
           LS+  +SRL  TW+ L SK KK + ELE L+DPS+N + YR+ +  +    P +PF+ + 
Sbjct: 104 LSSSPISRLKKTWEVLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFLGVY 163

Query: 598 LKDLAFTHDGNKTVVD-GLVNFEKMHMFAQTLRTLRYCRTRH--LDHDKTVVDGLVNFEK 654
           LKDL F H+GN   ++  LVNFEK    A+ LR +R  ++    L+ D+ ++  L    +
Sbjct: 164 LKDLTFLHEGNPDFLEGNLVNFEKRRKIAEILREIRQLQSNSYELNRDEDILAFLWKLLE 223

Query: 655 MHMFAQTL 662
           + +    L
Sbjct: 224 LILNEDEL 231

Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors. Length = 237

>gnl|CDD|239884 cd04437, DEP_Epac, DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins

 Score =  115 bits (291), Expect = 2e-30
 Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 5/106 (4%)

Query: 143 TIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYN 202
              R+C  G+ELVDWL+  +P +  SR    GMWQ LLEEGV+ HV+ E  F+DK   Y 
Sbjct: 25  RTYRQCCVGTELVDWLLQQSPCVQ-SRSQAVGMWQVLLEEGVLLHVDQELHFQDKYQFYR 83

Query: 203 FWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRK 248
           F  D+          +  EAEE L+EA+  L++  PDA+LR ILRK
Sbjct: 84  FSDDECSP----APLEKREAEEELQEAVTLLSQLGPDALLRMILRK 125

Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization. Length = 125

>gnl|CDD|239884 cd04437, DEP_Epac, DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 44  AGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMW 103
           AG  LR  +L+D    +RDRK        R+C  G+ELVDWL+  +P +  SR    GMW
Sbjct: 1   AGRALRNAILSDAPHLIRDRKYHL--RTYRQCCVGTELVDWLLQQSPCVQ-SRSQAVGMW 57

Query: 104 QALLEEGVIYH 114
           Q LLEEGV+ H
Sbjct: 58  QVLLEEGVLLH 68

Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization. Length = 125

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 62.0 bits (151), Expect = 9e-12
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 310 PLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG----C 365
               L +    ELA   + E     GE++  QGD   S YI++ GSV+V    +      
Sbjct: 1   LFSGLDDEELEELADA-LEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQI 59

Query: 366 VTSLYAGEDFGKLALVNNAPR 386
           V  L  G+ FG+LAL+ N PR
Sbjct: 60  VGFLGPGDLFGELALLGNGPR 80

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|239836 cd04371, DEP, DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 140 GGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHV-NGEQAFRDKC 198
             +T    C +GSELVDWL+      A++R+    + QALL+ G+I+HV + +  FRD  
Sbjct: 21  HLKTY-PNCFTGSELVDWLLDN--LEAITREEAVELGQALLKHGLIHHVSDDKHTFRDSY 77

Query: 199 ILY 201
            LY
Sbjct: 78  ALY 80

The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction. Length = 81

>gnl|CDD|216020 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 140 GGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGE-QAFRD-K 197
             +T    C +GSE VDWLM     L + R+    + Q LL+ G+I+HV  + + F D K
Sbjct: 10  HLKTY-PNCFTGSEAVDWLMDNFEGLVIDREEAVELGQLLLDHGLIHHVGDKHRGFLDSK 68

Query: 198 CILYNF 203
              Y F
Sbjct: 69  YSFYRF 74

The DEP domain is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) proteins, and has been implicated in membrane targeting. New findings in yeast, however, demonstrate a major role for a DEP domain in mediating the interaction of an RGS protein to the C-terminal tail of a GPCR, thus placing RGS in close proximity with its substrate G protein alpha subunit. Length = 74

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 56.6 bits (137), Expect = 7e-10
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)

Query: 313 HLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVI---YGKGCVTSL 369
           +L     RELA   +       GE++  QGD G S+YII+ G V+V      G+  +   
Sbjct: 4   NLDAEELRELADA-LEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGEEQIVGT 62

Query: 370 YAGED-FGKLALVNNAPR 386
               D FG+LAL+ N+ R
Sbjct: 63  LGPGDFFGELALLTNSRR 80

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|214489 smart00049, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 143 TIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNG--EQAFRDKCIL 200
                C +GSELVDWLM     +   R+    + Q LL+EG+I+HVNG  +  F+D   L
Sbjct: 15  KTYPNCFTGSELVDWLMDNLEII--DREEAVHLGQLLLDEGLIHHVNGPNKHTFKDSKAL 72

Query: 201 YNF 203
           Y F
Sbjct: 73  YRF 75

Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118). Length = 77

>gnl|CDD|216020 pfam00610, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

 Score = 53.8 bits (130), Expect = 3e-09
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 59  TLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYH 114
            L+DRK    +T    C +GSE VDWLM     L + R+    + Q LL+ G+I+H
Sbjct: 3   KLKDRK-KHLKTY-PNCFTGSEAVDWLMDNFEGLVIDREEAVELGQLLLDHGLIHH 56

The DEP domain is responsible for mediating intracellular protein targeting and regulation of protein stability in the cell. The DEP domain is present in a number of signaling molecules, including Regulator of G protein Signaling (RGS) proteins, and has been implicated in membrane targeting. New findings in yeast, however, demonstrate a major role for a DEP domain in mediating the interaction of an RGS protein to the C-terminal tail of a GPCR, thus placing RGS in close proximity with its substrate G protein alpha subunit. Length = 74

>gnl|CDD|239836 cd04371, DEP, DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)

Query: 47  VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQAL 106
           ++R +L +D    ++DRK    +T    C +GSELVDWL+      A++R+    + QAL
Sbjct: 2   LVRIMLDSDSGVPIKDRKY-HLKTY-PNCFTGSELVDWLLDN--LEAITREEAVELGQAL 57

Query: 107 LEEGVIYH 114
           L+ G+I+H
Sbjct: 58  LKHGLIHH 65

The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction. Length = 81

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 333 RKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPR 386
           +KGE++F +GD   S YI++ G V V    +      +  L  G+ FG+LAL+   PR
Sbjct: 5   KKGEVIFREGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGGEPR 62

Length = 91

>gnl|CDD|239890 cd04443, DEP_GPR155, DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 141 GRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCIL 200
           G    +    G +LV WL+ +   LA  R       + LL+ GV+ H+  E  FRD+ +L
Sbjct: 23  GLRTYKGVFCGCDLVSWLIEVG--LAQDRGEAVLYGRRLLQGGVLQHITNEHHFRDENLL 80

Query: 201 YNF 203
           Y F
Sbjct: 81  YRF 83

GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown. Length = 83

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPS 441
            ++  QGD   S YI++ GSV+V    +      V  L  G+ FG+LAL+ N P 
Sbjct: 26  EVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR 80

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|214489 smart00049, DEP, Domain found in Dishevelled, Egl-10, and Pleckstrin

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 55  DESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYH 114
            E+G     +    +T    C +GSELVDWLM     +   R+    + Q LL+EG+I+H
Sbjct: 1   PETGLKLRDRKYFLKTY-PNCFTGSELVDWLMDNLEII--DREEAVHLGQLLLDEGLIHH 57

Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118). Length = 77

>gnl|CDD|239886 cd04439, DEP_1_P-Rex, DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 143 TIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYN 202
           +   +C  G+E V WL+ +         +  G  QALLE G+I+HV+ +  F+++ +LY 
Sbjct: 23  STFPKCFLGNEFVSWLLEIGEISKPEEGVNLG--QALLENGIIHHVSDKHQFKNEQVLYR 80

Query: 203 F 203
           F
Sbjct: 81  F 81

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity. Length = 81

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 393 VFHQGDEGKSWYIIIQGSVDVVI---YGKGCVTSLYAGED-FGKLALVNNAPSYQ 443
           +  QGD G S+YII+ G V+V      G+  +       D FG+LAL+ N+    
Sbjct: 28  IIRQGDVGDSFYIIVSGEVEVYKVLEDGEEQIVGTLGPGDFFGELALLTNSRRAA 82

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|239888 cd04441, DEP_2_DEP6, DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 146 RRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNF 203
            R   GSE +DWL  L    A SR+    + + LLE G+I HV+ +  F D  +LY F
Sbjct: 30  ERTFVGSEFIDWL--LQEGEAESRREAVQLCRRLLEHGIIQHVSNKHHFFDSNLLYQF 85

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown. Length = 85

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPS 441
            ++F +GD   S YI++ G V V    +      +  L  G+ FG+LAL+   P 
Sbjct: 8   EVIFREGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGGEPR 62

Length = 91

>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552)

 Score = 41.4 bits (98), Expect = 7e-04
 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 19/114 (16%)

Query: 206 DKEGSSSQATAQDI-----AEAEEHLEEALLALARRAPDAILRY---------ILRKQLK 251
           + + SS++  A+ I      EAE   +EALL     A + I +            R +L+
Sbjct: 26  EAKISSAEEEAKQIIEEAKKEAEALKKEALLE----AKEEIHKLRAEAERELKERRNELQ 81

Query: 252 KLQNRYLPREYML-HLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEE 304
           + + R L +E  L   +  +E KEE  +E+E+E     + L+   E+LE++ EE
Sbjct: 82  RQEKRLLQKEETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEE 135

This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important. Length = 201

>gnl|CDD|239895 cd04448, DEP_PIKfyve, DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 148 CASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILY 201
           C  G ELV+WL  +    A +R     + QALL+ G I  V+ +  FRD+  LY
Sbjct: 28  CILGKELVNWL--IRQGKAATRVQAIAIGQALLDAGWIECVSDDDLFRDEYALY 79

PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking. Length = 81

>gnl|CDD|239889 cd04442, DEP_1_DEP6, DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 148 CASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGE-QAFRDKCILYNF 203
           C  G EL+DWL+      A  R+    + Q LL+  +I+HV  E + F+D  + Y F
Sbjct: 28  CFVGKELIDWLIE--HKEASDRETAIKIMQKLLDHSIIHHVCDEHKEFKDAKLFYRF 82

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown. Length = 82

>gnl|CDD|239891 cd04444, DEP_PLEK2, DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins

 Score = 37.6 bits (87), Expect = 0.003
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 16/82 (19%)

Query: 146 RRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVN------------GEQA 193
           ++   GS LVDWL+S   S A SR     +   L+EE  +  V              EQ 
Sbjct: 29  KKTFLGSALVDWLIS--NSFAASRLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQF 86

Query: 194 FRDKCILYNFWQD--KEGSSSQ 213
             D   LY F +   K+GSS +
Sbjct: 87  LDDSTALYTFAESYKKKGSSKE 108

Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains. Length = 109

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 25/95 (26%), Positives = 49/95 (51%)

Query: 212 SQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLEREIE 271
           S   ++   E EE  EE    L +    A L  +L+  L++L+ +    E  +  E +  
Sbjct: 618 SLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRI 677

Query: 272 DKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELL 306
           + EE+ +E+ EE  Q+ + L++  E+LE++ ++L 
Sbjct: 678 ENEEQLEEKLEELEQLEEELEQLREELEELLKKLG 712

Length = 908

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	714
smart00147	242	RasGEF Guanine nucleotide exchange factor for Ras-	100.0
KOG2378|consensus	573		100.0
cd00155	237	RasGEF Guanine nucleotide exchange factor for Ras-	100.0
KOG3542|consensus	1283		100.0
PF00617	188	RasGEF: RasGEF domain; InterPro: IPR001895 Ras pro	100.0
cd04437	125	DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin)	100.0
KOG3629|consensus	728		99.96
cd04440	93	DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstr	99.95
cd04441	85	DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstri	99.92
KOG1113|consensus	368		99.92
cd04442	82	DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstri	99.91
KOG3541|consensus	477		99.9
cd04443	83	DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstri	99.9
cd04439	81	DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstr	99.88
KOG0614|consensus	732		99.87
cd04448	81	DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstr	99.86
cd04449	83	DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Plec	99.81
cd04438	84	DEP_dishevelled DEP (Dishevelled, Egl-10, and Plec	99.8
cd04446	95	DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstri	99.77
cd04447	92	DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin	99.73
KOG3417|consensus	840		99.69
PF00610	74	DEP: Domain found in Dishevelled, Egl-10, and Plec	99.69
cd04444	109	DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin	99.67
smart00049	77	DEP Domain found in Dishevelled, Egl-10, and Pleck	99.63
cd04371	81	DEP DEP domain, named after Dishevelled, Egl-10, a	99.56
cd04450	88	DEP_RGS7-like DEP (Dishevelled, Egl-10, and Plecks	99.55
cd04445	99	DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin	99.29
KOG3417|consensus	840		99.27
KOG0614|consensus	732		99.11
KOG0498|consensus	727		99.1
KOG0500|consensus	536		99.04
cd04445	99	DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin	99.04
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	98.98
PLN03192	823	Voltage-dependent potassium channel; Provisional	98.95
KOG1113|consensus	368		98.94
PLN02868	413	acyl-CoA thioesterase family protein	98.81
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	98.8
cd00038	115	CAP_ED effector domain of the CAP family of transc	98.73
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	98.68
KOG0499|consensus	815		98.62
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	98.62
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	98.6
COG2905	610	Predicted signal-transduction protein containing c	98.51
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	98.37
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	98.37
KOG2968|consensus	1158		98.29
cd04440	93	DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstr	98.23
cd04436	84	DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin	98.23
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	98.22
KOG3572|consensus	1701		98.1
cd04436	84	DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin	97.92
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	97.86
KOG3571|consensus	626		97.86
PRK09391	230	fixK transcriptional regulator FixK; Provisional	97.79
KOG3542|consensus	1283		97.78
cd04437	125	DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin)	97.76
cd04441	85	DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstri	97.72
KOG3571|consensus	626		97.65
cd04443	83	DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstri	97.64
cd04442	82	DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstri	97.63
cd04439	81	DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstr	97.58
KOG0501|consensus	971		97.42
KOG2968|consensus	1158		97.22
cd04435	82	DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin	97.17
cd04446	95	DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstri	97.14
cd04444	109	DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin	97.02
cd04448	81	DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstr	96.97
cd04447	92	DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin	96.94
cd04449	83	DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Plec	96.93
cd04438	84	DEP_dishevelled DEP (Dishevelled, Egl-10, and Plec	96.92
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	96.87
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	96.82
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	96.81
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	96.77
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	96.73
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	96.7
PF00610	74	DEP: Domain found in Dishevelled, Egl-10, and Plec	96.66
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	96.51
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	96.21
PRK09391	230	fixK transcriptional regulator FixK; Provisional	96.14
smart00049	77	DEP Domain found in Dishevelled, Egl-10, and Pleck	95.86
cd00038	115	CAP_ED effector domain of the CAP family of transc	95.77
cd04435	82	DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin	95.54
PLN03192	823	Voltage-dependent potassium channel; Provisional	95.48
cd04450	88	DEP_RGS7-like DEP (Dishevelled, Egl-10, and Plecks	95.42
cd04371	81	DEP DEP domain, named after Dishevelled, Egl-10, a	95.4
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	95.06
KOG0498|consensus	727		94.56
KOG0499|consensus	815		94.04
KOG0500|consensus	536		93.96
PLN02868	413	acyl-CoA thioesterase family protein	93.01
COG2905	610	Predicted signal-transduction protein containing c	92.09
KOG2378|consensus	573		90.54
KOG0501|consensus	971		88.32
TIGR00869	232	sec62 protein translocation protein, Sec62 family.	82.66
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	81.31

>smart00147 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases

Probab=100.00  E-value=1.4e-43  Score=366.59  Aligned_cols=229  Identities=38%  Similarity=0.655  Sum_probs=209.5

Q ss_pred             hhHHHHHHh--hhheeeeeccccccCCceeeeecCCccccccc-hhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHH
Q psy11552        441 SYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITA-NLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKM  517 (714)
Q Consensus       441 ~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tp-nI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~f  517 (714)
                      +.++|+|||  ++++|+.+++.|+    +...|++......+| ++..++++||.++.||+++|+.++++++|++++++|
T Consensus         6 ~~eiA~QlTl~d~~~f~~I~~~El----~~~~~~~~~~~~~~p~~i~~~~~~~n~is~wv~~~Il~~~~~~~R~~~i~~f   81 (242)
T smart00147        6 PKELAEQLTLLDFELFRKIDPSEL----LGSVWGKRSKKSPSPLNLERFIERFNEVSNWVATEILKQTTPKDRAELLSKF   81 (242)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHH----HHHHHcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            446899998  5579999999997    444566666666677 999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCC-CCccccccc
Q psy11552        518 IKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ-SPVIPFMPL  596 (714)
Q Consensus       518 I~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~-~p~IPflg~  596 (714)
                      |+||.+|.++||||+++||++||++++|.||+.||+.++++.++.|++|+.++++.+||+.||+++.+.. +|||||+|+
T Consensus        82 I~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~L~~l~s~~~n~~~yR~~l~~~~~~p~IP~lg~  161 (242)
T smart00147       82 IQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEKLPSKYKKLFEELEELLSPERNFKNYREALSSCNLPPCVPFLGV  161 (242)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHhCChHHhhhHHHHHHCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCccchHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988 999999999


Q ss_pred             hhhchhccccCCCCcc-CCcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q psy11552        597 LLKDLAFTHDGNKTVV-DGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVL  675 (714)
Q Consensus       597 ~L~Dl~~i~egn~~~~-~glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~~  675 (714)
                      +|+|++++++|+|++. +|+|||.|++++                                  ++.+..+..||+.+|++
T Consensus       162 ~l~dl~~~~~~~~~~~~~~~iNf~k~~~i----------------------------------~~~i~~~~~~Q~~~y~~  207 (242)
T smart00147      162 LLKDLTFIDEGNPDFLENGLVNFEKRRKI----------------------------------AEILREIRQLQSQPYNL  207 (242)
T ss_pred             HHHHHHHHHccCcccccCCcccHHHHHHH----------------------------------HHHHHHHHHHhcCCCCC
Confidence            9999999999999998 799999999999                                  55555566677778888


Q ss_pred             CCCCCCCh-HHHHHHHhhC-CCCCCHHHHHHHHhhcCCC
Q psy11552        676 DPPTPKCE-SEVKSYVSCL-RAMDNQRILTSMSQKLEPR  712 (714)
Q Consensus       676 ~~~~~~~~-~~i~~yi~~~-~~~~~~~~L~~lS~~lEPr  712 (714)
                      .+     . +++|.|+.++ ..+++++.+|++|+++|||
T Consensus       208 ~~-----~~~~iq~~l~~~~~~~~~~~~~~~~S~~~EP~  241 (242)
T smart00147      208 RP-----NRSDIQSLLQQLLDHLDEEEELYQLSLKIEPR  241 (242)
T ss_pred             CC-----CcHHHHHHHHHHHhhcCCHHHHHHHHHHhCCC
Confidence            77     6 8999999997 6777788999999999998

>KOG2378|consensus

Probab=100.00  E-value=2.4e-42  Score=360.46  Aligned_cols=232  Identities=55%  Similarity=0.849  Sum_probs=218.1

Q ss_pred             hHHHHHHh--hhheeeeeccccccCCceeeeecCCc-cccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHH
Q psy11552        442 YQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNR-FQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMI  518 (714)
Q Consensus       442 ~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~-f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI  518 (714)
                      ..+|.+|+  ++.+|.++.-.|+    ++++++++. ....+.|++.+.++||+++.||+++|+.++.+.+|++++++||
T Consensus       339 ~dlA~qLt~fdw~Lfnsih~~El----I~y~i~~q~~~~~~tanleLl~~R~neVq~wv~tei~lc~ql~kr~qllkkfi  414 (573)
T KOG2378|consen  339 KDLAHQLTLFDWSLFNSIHENEL----IHYVIGGQIPCDRNTANLELLLRRFNEVQHWVATEILLCQQLGKRCQLLKKFI  414 (573)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhHh----hHhhhcccCCCCccchhHHHHHHHHhhchhhhhchhhhhcchhHHHHHHHHHH
Confidence            34788888  5579999999997    888998554 4578899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccccccchh
Q psy11552        519 KLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLL  598 (714)
Q Consensus       519 ~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L  598 (714)
                      ++|..|++.+|.++++||++||++.+|+||..||+++|.+.++.|.+++++++|..|++.||.+.++.+||.|||+++.|
T Consensus       415 Kiaal~ke~~~l~sffAV~~GL~~~avSrl~~tweklP~k~kk~~s~~enl~dP~~nhr~yR~l~~km~pp~ipf~Plll  494 (573)
T KOG2378|consen  415 KIAALCKEGENLNSFFAVVMGLSNRAVSRLDLTWEKLPYKFKKLFSELENLLDPCRNHRTYRLLSSKMSPPYIPFMPLLL  494 (573)
T ss_pred             HHHHHHHhhccccchHHHhhcchhHHHHhhhcccccCchHHHhHHHHHHhcCCchhhhHHHHHHHHhcCCCCCCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhccccCCCCccCCcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy11552        599 KDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPP  678 (714)
Q Consensus       599 ~Dl~~i~egn~~~~~glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~~~~~  678 (714)
                      +|++|+++||++|++|+|||+||+|+                                  |++.+++++|+++|++... 
T Consensus       495 kD~tf~heGnkt~v~glVNfEKmhmi----------------------------------A~~~Rt~r~cRS~p~~~~a-  539 (573)
T KOG2378|consen  495 KDLTFIHEGNKTFVDGLVNFEKMHMI----------------------------------AKTARTLRHCRSQPLNPGA-  539 (573)
T ss_pred             hhceeeccchHHHHhcchhHHHHHHH----------------------------------HHHHHHHHHHhcCCCCCCC-
Confidence            99999999999999999999999999                                  8888889999999888643 


Q ss_pred             CCCChHHHHHHHhhCCCCCCHHHHHHHHhhcCCCC
Q psy11552        679 TPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRR  713 (714)
Q Consensus       679 ~~~~~~~i~~yi~~~~~~~~~~~L~~lS~~lEPr~  713 (714)
                       ++.+.+.++|++++.+||||+.|++||+++|||.
T Consensus       540 -~~~h~e~rSyVrql~VIDnQ~~L~qLS~~lEpr~  573 (573)
T KOG2378|consen  540 -PHEHQETRSYVRQLRVIDNQRKLSQLSYELEPRS  573 (573)
T ss_pred             -cccchhHHHHHhhHeeeccHHHHHHHhhhcCCCC
Confidence             4568899999999999999999999999999984

>cd00155 RasGEF Guanine nucleotide exchange factor for Ras-like small GTPases

Probab=100.00  E-value=1.4e-41  Score=350.65  Aligned_cols=226  Identities=33%  Similarity=0.589  Sum_probs=203.7

Q ss_pred             chhHHHHHHh--hhheeeeeccccccCCceeeeecCCccc-cccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHH
Q psy11552        440 PSYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQ-QITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRK  516 (714)
Q Consensus       440 p~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~-~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~  516 (714)
                      ++.++|+|||  ++++|..+++.|+    +...|++.... +.+|++..++++||.++.||+++|+.++++++|++++++
T Consensus         5 d~~eiA~QlTl~~~~lf~~I~~~El----~~~~~~~~~~~~~~~p~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~   80 (237)
T cd00155           5 DPKELAEQLTLLDFELFRKIEPFEL----LGSLWSKKDKNIHLSPNLERFIERFNNLSNWVASEILLCTNPKKRARLLSK   80 (237)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCHHHH----HHHHHCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3446899998  5579999999996    33445554443 379999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhC--CCCccccc
Q psy11552        517 MIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKL--QSPVIPFM  594 (714)
Q Consensus       517 fI~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~--~~p~IPfl  594 (714)
                      ||+||.+|.++||||+++||++||++++|.||++||+.++++.++.|++|..++++++||+.||+.+.+.  ++|||||+
T Consensus        81 ~I~ia~~l~~l~Nfns~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~~~p~IP~l  160 (237)
T cd00155          81 FIQVAKHCRELNNFNSLMAIVSALSSSPISRLKKTWEVLSSKLKKLFEELEELVDPSRNFKNYRKLLKSVGPNPPCVPFL  160 (237)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhCCccchhHHHHHHHCCHHHHHHHHHHHHHhCcHhhHHHHHHHHHhcCCCCCCeeeh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998  89999999


Q ss_pred             cchhhchhccccCCCCccC-CcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCC
Q psy11552        595 PLLLKDLAFTHDGNKTVVD-GLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHL  673 (714)
Q Consensus       595 g~~L~Dl~~i~egn~~~~~-glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~  673 (714)
                      |++|+||+++++|+|++.+ |+|||.|++++                                  ++.+..+..||+.+|
T Consensus       161 g~~l~dl~~~~e~~~~~~~~~~iN~~K~~~i----------------------------------~~~i~~~~~~Q~~~Y  206 (237)
T cd00155         161 GVYLKDLTFLHEGNPDFLEGNLVNFEKRRKI----------------------------------AEILREIRQLQSNSY  206 (237)
T ss_pred             hHHHHHHHHHHccCCccCcCCCccHHHHHHH----------------------------------HHHHHHHHHHhhCCC
Confidence            9999999999999999997 99999999999                                  455555556667788


Q ss_pred             CCCCCCCCChHHHHHHHhhCC-CCCCHHHHHHHHhh
Q psy11552        674 VLDPPTPKCESEVKSYVSCLR-AMDNQRILTSMSQK  708 (714)
Q Consensus       674 ~~~~~~~~~~~~i~~yi~~~~-~~~~~~~L~~lS~~  708 (714)
                      ++.|     .++++.|+.+++ +..|++.||++|++
T Consensus       207 ~~~~-----~~~iq~~l~~~~~~~~~~~~l~~~Sl~  237 (237)
T cd00155         207 ELNR-----DEDILAFLWKLLELILNEDELYELSLE  237 (237)
T ss_pred             CCCC-----cHHHHHHHHhccccCCCHHHHHHHhcC
Confidence            8877     889999999998 56679999999974

Small GTP-binding proteins of the Ras superfamily function as molecular switches in fundamental events such as signal transduction, cytoskeleton dynamics and intracellular trafficking. Guanine-nucleotide-exchange factors (GEFs) positively regulate these GTP-binding proteins in response to a variety of signals. GEFs catalyze the dissociation of GDP from the inactive GTP-binding proteins. GTP can then bind and induce structural changes that allow interaction with effectors.

>KOG3542|consensus

Probab=100.00  E-value=8.8e-41  Score=360.01  Aligned_cols=262  Identities=32%  Similarity=0.568  Sum_probs=207.9

Q ss_pred             HHHHH--hhhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHH
Q psy11552        444 LHMYL--EQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLA  521 (714)
Q Consensus       444 ~~~~l--~~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA  521 (714)
                      +|.||  +.+.+|.++.+.|....     +=+-+...-++++..|-+-||.-++||+++||.+.+.-+|+++|++||+||
T Consensus       872 VAtQLsmrdF~lFrnIEPTEyiDd-----LFKL~SKtg~~~LkrFE~l~NqEtfWVAsEIltE~nqlKRmKiIKhFIKiA  946 (1283)
T KOG3542|consen  872 VATQLSMRDFSLFRNIEPTEYIDD-----LFKLDSKTGSPKLKRFEQLFNQETFWVASEILTERNQLKRMKIIKHFIKIA  946 (1283)
T ss_pred             HHHHhhhhhhhhHhcCChHHHHHH-----HHhhccccCCccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444  37789999888885221     112233456789999999999999999999999999999999999999999


Q ss_pred             HHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHh--CCCCccccccchhh
Q psy11552        522 AYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSK--LQSPVIPFMPLLLK  599 (714)
Q Consensus       522 ~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~--~~~p~IPflg~~L~  599 (714)
                      .+|++++|||+++||++||+-++|.||+-||+++|+|+.+.|++|+++++|++|...||+.+.+  .+||.||.++++-+
T Consensus       947 lhCReckNFNSMFAIiSGLnla~VaRLr~tWEklpsKYek~lqdlqdlfDPSRNMaKYRn~L~sq~~qPPiiPlfPViKK 1026 (1283)
T KOG3542|consen  947 LHCRECKNFNSMFAIISGLNLAAVARLRSTWEKLPSKYEKMLQDLQDLFDPSRNMAKYRNHLASQAQQPPIIPLFPVIKK 1026 (1283)
T ss_pred             HHHHHhcchhhHHHHHhcCchHHHHHHhhhHhhccHHHHHHHHHHHHhhCchhhHHHHHHHHHhhccCCCccccchheec
Confidence            9999999999999999999999999999999999999999999999999999999999999986  48999999999999


Q ss_pred             chhccccCCCCccCCcccHHHHHHHHHHHHHHhhhhcccCCCCc-------cccccchhhHHHH--HHHHHHHHHHHHhh
Q psy11552        600 DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDK-------TVVDGLVNFEKMH--MFAQTLRTLRYCRT  670 (714)
Q Consensus       600 Dl~~i~egn~~~~~glINf~K~~~i~~ii~~i~~~q~~~~~~~~-------~~~~~l~nf~k~~--~~~~~i~~i~~~q~  670 (714)
                      ||||+||||.++.||+|||+|+|+|++-|+.+.+.-+.++++..       .+.+++.|-....  +-+..-+.++.  +
T Consensus      1027 DlTFlHeGNdskvdgLvNFEKLRmIaKeIR~V~rmsSanmdpA~Mfr~r~gslsqgstn~n~ldvsq~g~hkKr~rr--s 1104 (1283)
T KOG3542|consen 1027 DLTFLHEGNDSKVDGLVNFEKLRMIAKEIRGVMRMSSANMDPASMFRRRGGSLSQGSTNMNSLDVSQVGTHKKRMRR--S 1104 (1283)
T ss_pred             cceeeecCCchhhhccccHHHHHHHHHHHHHHHhhccCCCCHHHHHHhcCCcccccccccceeecccchhhhhhccc--c
Confidence            99999999999999999999999999999999998888887742       1112222211000  00000000000  0


Q ss_pred             cCCCCCC--CCCCChHHHHHHHhhCCCCCCHHHHHHHHhhcCCC
Q psy11552        671 RHLVLDP--PTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPR  712 (714)
Q Consensus       671 ~~~~~~~--~~~~~~~~i~~yi~~~~~~~~~~~L~~lS~~lEPr  712 (714)
                      +..+-..  ....+...+++|+.++.+-+|+++|--+|+++||.
T Consensus      1105 s~lnaKKlYEdAqMaRKVKqYLs~L~ve~dEe~lq~mSlq~EPa 1148 (1283)
T KOG3542|consen 1105 SNLNAKKLYEDAQMARKVKQYLSGLHVEDDEEELQSMSLQIEPA 1148 (1283)
T ss_pred             ccccHHHHHHHHHHHHHHHHHhccCcccccHHHHhhhheecchh
Confidence            0000000  00123567999999999999999999999999995

>PF00617 RasGEF: RasGEF domain; InterPro: IPR001895 Ras proteins are membrane-associated molecular switches that bind GTP and GDP and slowly hydrolyze GTP to GDP []

Probab=100.00  E-value=4.8e-35  Score=290.94  Aligned_cols=180  Identities=34%  Similarity=0.617  Sum_probs=161.6

Q ss_pred             chhHHHHHHh--hhheeeeeccccccCCceeeeecCCcccc-ccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHH
Q psy11552        440 PSYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQ-ITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRK  516 (714)
Q Consensus       440 p~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~-~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~  516 (714)
                      ++.++|+|||  +.++|..+++.|+    +...|....... .+|++..++++||.++.||+.+||.++++++|++++++
T Consensus         4 ~~~~iA~qlt~~~~~lf~~I~~~e~----~~~~~~~~~~~~~~~~~i~~~~~~~n~ls~wv~~~Il~~~~~~~R~~~i~~   79 (188)
T PF00617_consen    4 DPEEIARQLTLLDSELFRKIKPSEL----LYSVWSKSDKKENQSPNINKLIDRFNKLSNWVISEILSQPDPEERAKIIEK   79 (188)
T ss_dssp             -HHHHHHHHHHHHHHHHHTSSHHHH----HGGGGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCCCHHHH----HHHHhcCCCCCCccChhHHHHHHHhhhHHHHHHHHhhccccHHHHHHHHHH
Confidence            3456899998  5579999999997    444555544333 58999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCC-Ccccccc
Q psy11552        517 MIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS-PVIPFMP  595 (714)
Q Consensus       517 fI~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~-p~IPflg  595 (714)
                      ||+||.+|.++|||++++||++||++++|.||++||+.++++.++.|++|+.++++++||+.||.++.+.++ |||||||
T Consensus        80 ~I~va~~l~~l~Nf~s~~aI~~~L~s~~i~rL~~tw~~l~~~~~~~~~~l~~l~~~~~~~~~yr~~~~~~~~~~~IP~lg  159 (188)
T PF00617_consen   80 FIQVAKKLYELGNFNSLMAILSALNSSSIQRLKKTWKSLSKKSKKTFEELESLFSPSNNYKNYREALKKCNPQPCIPFLG  159 (188)
T ss_dssp             HHHHHHHHHHTTBHHHHHHHHHHHTSHHHHT-HHHHHTSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTSTSSSSB--HH
T ss_pred             HHhHHHHHHHhcCchHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHhhcccchhhHHHHHhhcccccCceecccH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998887 9999999


Q ss_pred             chhhchhccccCCCCccCC-cccHHHHHH
Q psy11552        596 LLLKDLAFTHDGNKTVVDG-LVNFEKMHM  623 (714)
Q Consensus       596 ~~L~Dl~~i~egn~~~~~g-lINf~K~~~  623 (714)
                      ++++|++++++|+|+++++ +|||+|+|+
T Consensus       160 ~~l~dl~~~~~~~~~~~~~~liN~~K~r~  188 (188)
T PF00617_consen  160 IFLKDLIFIEEGNPDFIDDGLINFEKCRK  188 (188)
T ss_dssp             HHHHHHHHHHHHS-SECTTTCEEHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCCCccCCcccccC
Confidence            9999999999999999976 999999985

The balance between the GTP bound (active) and GDP bound (inactive) states is regulated by the opposite action of proteins activating the GTPase activity and that of proteins which promote the loss of bound GDP and the uptake of fresh GTP [, ]. The latter proteins are known as guanine-nucleotide dissociation stimulators (GDSs) (or also as guanine-nucleotide releasing (or exchange) factors (GRFs)). Proteins that act as GDS can be classified into at least two families, on the basis of sequence similarities, the CDC24 family (see IPR001331 from INTERPRO) and the CDC25 family. The size of the proteins of the CDC25 family range from 309 residues (LTE1) to 1596 residues (sos). The sequence similarity shared by all these proteins is limited to a region of about 250 amino acids generally located in their C-terminal section (currently the only exceptions are sos and ralGDS where this domain makes up the central part of the protein). This domain has been shown, in CDC25 an SCD25, to be essential for the activity of these proteins.; GO: 0005085 guanyl-nucleotide exchange factor activity, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IJE_S 3T6G_A 1NVW_S 1BKD_S 1XDV_A 2II0_A 1NVU_S 1NVX_S 1NVV_S 1XD4_B ....

>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins

Probab=100.00  E-value=1.3e-33  Score=256.44  Aligned_cols=125  Identities=46%  Similarity=0.743  Sum_probs=117.7

Q ss_pred             HHHHHHHHhhcCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeec
Q psy11552         44 AGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFS  123 (714)
Q Consensus        44 ~~~~l~~~~~~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~  123 (714)
                      +|++||+.++.+++.+||||+|++  ++|++||+|+||||||++++.+                                
T Consensus         1 aG~~l~~~~~~~~~~~ikdR~~~~--~~y~~cF~GsElVdWLl~~~~~--------------------------------   46 (125)
T cd04437           1 AGRALRNAILSDAPHLIRDRKYHL--RTYRQCCVGTELVDWLLQQSPC--------------------------------   46 (125)
T ss_pred             CcHHHHHHHHccCcccceeeeECC--EECCcccccHHHHHHHHHcCCC--------------------------------
Confidence            589999999999999999999999  9999999999999999999986                                


Q ss_pred             CCCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeee
Q psy11552        124 ETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNF  203 (714)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf  203 (714)
                                                                +.+|+|||.+||+|++.|+|+||.++|.|+|+++||||
T Consensus        47 ------------------------------------------v~sR~eAv~lgq~Ll~~gvi~HV~~~h~F~D~~~fYrF   84 (125)
T cd04437          47 ------------------------------------------VQSRSQAVGMWQVLLEEGVLLHVDQELHFQDKYQFYRF   84 (125)
T ss_pred             ------------------------------------------CCCHHHHHHHHHHHHhCCCeEEeCCcCccccCCeeEEE
Confidence                                                      68999999999999999999999999999999999999


Q ss_pred             ccCccCCCCCCchhhhHHHHHHHHHHHHHHHhhCChHHHHHHHHH
Q psy11552        204 WQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRK  248 (714)
Q Consensus       204 ~~d~~~~~~~~~~~~~~~~ee~l~e~l~~l~q~~~~~~~r~ilr~  248 (714)
                      ..|++...++.    .++.+|+|+++|.+|+|++|++++||+++|
T Consensus        85 ~~d~~~~~~~~----~~~~eee~~~~v~~l~q~~p~~~~~~~~~k  125 (125)
T cd04437          85 SDDECSPAPLE----KREAEEELQEAVTLLSQLGPDALLRMILRK  125 (125)
T ss_pred             CCccCCcccch----hhhhHHHHHHHHHHHHhhCcHHHHHHhccC
Confidence            99998776653    478899999999999999999999999875

Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.

>KOG3629|consensus

Probab=99.96  E-value=1.7e-29  Score=268.37  Aligned_cols=229  Identities=22%  Similarity=0.359  Sum_probs=203.1

Q ss_pred             HHHHHHhhh--heeeeeccccccCCceeeeecCC-ccccccchhhhhhhhhhhHHHhHhhhhcccc-ChhhHHHHHHHHH
Q psy11552        443 QLHMYLEQM--AVYFTTTAPDIKGPRRYKFRGPN-RFQQITANLDVFLRRFNEIQYWVITEILLVT-SLNKRVQILRKMI  518 (714)
Q Consensus       443 ~~~~~l~~~--~ly~~itv~ei~~p~~~~~l~r~-~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~-~~~~R~~~i~~fI  518 (714)
                      .+|.|||.+  .+|...-+..|+|..    |++. ...+.+|.+.+.+.+||.|+.-|+++||..+ .+..||++|+|||
T Consensus       218 ~iAEQLT~~DA~LFk~l~phqClGcv----Ws~Rd~~ghl~ptvrATi~QFN~vs~~Vvssilg~~lrp~qRAkiieKWI  293 (728)
T KOG3629|consen  218 QIAEQLTFWDAALFKELLPHQCLGCV----WSKRDTAGHLVPTVRATIEQFNSVSQRVVSSILGPDLRPEQRAKIIEKWI  293 (728)
T ss_pred             HHHHHHHHHHHHHHHHhhhHhcccce----eccCCCcccccchHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHH
Confidence            488999977  499988888886644    4444 4458999999999999999999999999975 5689999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhC------------
Q psy11552        519 KLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKL------------  586 (714)
Q Consensus       519 ~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~------------  586 (714)
                      +||.+|+-++||.++.||+++|++.+|+|||.+|..++......|++|.++++.++|+..-|+++-+.            
T Consensus       294 ~iA~E~rllknfssl~avvsalqs~pihrlk~aw~~v~rdsls~f~els~ifse~~n~~~sReLL~qeGtsksspLe~s~  373 (728)
T KOG3629|consen  294 DIARECRLLKNFSSLKAVVSALQSEPIHRLKSAWNSVPRDSISQFRELSSIFSEDGNQGNSRELLIQEGTSKSSPLEASP  373 (728)
T ss_pred             HHHHHHHHHhhhccceeeeccccccHHHHHHhhhccCchhHHHHHHHHHhhcccccCCcchhHHHHHhcccccCCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999877641            


Q ss_pred             -----------CCCccccccchhhchhccccCCCCcc-CCcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHH
Q psy11552        587 -----------QSPVIPFMPLLLKDLAFTHDGNKTVV-DGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEK  654 (714)
Q Consensus       587 -----------~~p~IPflg~~L~Dl~~i~egn~~~~-~glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k  654 (714)
                                 ....|||||.||+||+++++..+++. +|+|||+|.|+..+++.+++.+|+.                 
T Consensus       374 k~a~~r~qr~~~qGtVPyLGtFLtDLvMlDtA~~d~~e~glINFeKRRkEFeVla~lrllQsa-----------------  436 (728)
T KOG3629|consen  374 KRAHARWQRQDKQGTVPYLGTFLTDLVMLDTAMNDYPEEGLINFEKRRKEFEVLAKLRLLQSA-----------------  436 (728)
T ss_pred             hhhhhhhhhccCCcccchHHHHHHHHHHHhhcccCCcccccchHhhhhHHHHHHHHHHHHHHH-----------------
Confidence                       23489999999999999999999998 5999999999998888888777652                 


Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHhhCCCCCCHHHHHHHHhhcCCCC
Q psy11552        655 MHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRR  713 (714)
Q Consensus       655 ~~~~~~~i~~i~~~q~~~~~~~~~~~~~~~~i~~yi~~~~~~~~~~~L~~lS~~lEPr~  713 (714)
                                     ...|++.|     +.++..|++.++.++ |++-+.+|+++||+.
T Consensus       437 ---------------ar~Ynl~p-----d~~f~aWf~~l~~lt-E~es~~~s~eiE~p~  474 (728)
T KOG3629|consen  437 ---------------ARHYNLHP-----DEEFGAWFQVLEQLT-EDESIIQSCEIEKPP  474 (728)
T ss_pred             ---------------hhccCCCc-----hHHHHHHHHhccCCc-HHHHHHHhhcccCCC
Confidence                           24789888     999999999999887 677799999999874

>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins

Probab=99.95  E-value=6.8e-29  Score=212.79  Aligned_cols=92  Identities=23%  Similarity=0.343  Sum_probs=87.8

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccce
Q psy11552         38 SVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKI  117 (714)
Q Consensus        38 ~~~~~~~~~~l~~~~~~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~  117 (714)
                      +++|+.+|+.||..+++..+.+||||+||+  ++|++||+|+|+||||++++.                           
T Consensus         2 ~~~i~~~G~~L~~~l~~~~~~likdR~~~l--~~y~~cFvGsElVdWLi~~g~---------------------------   52 (93)
T cd04440           2 MEDIMSKGVRLYCRLHSLFTPVVKDRDYHL--KTYKSVVPASKLVDWLLAQGD---------------------------   52 (93)
T ss_pred             HHHHHHHHHHHHHHHHccCccceeeceecc--EEcccccchhHHHHHHHHcCC---------------------------
Confidence            568999999999999999999999999999  999999999999999999988                           


Q ss_pred             eeEeecCCCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCc
Q psy11552        118 SCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDK  197 (714)
Q Consensus       118 ~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~  197 (714)
                                                                      +.+|+|||.+||+|++.|+|+||.++|.|+|+
T Consensus        53 ------------------------------------------------~~tR~eAv~~gq~Ll~~gii~HV~~~h~F~D~   84 (93)
T cd04440          53 ------------------------------------------------CRTREEAVILGVGLCNNGFMHHVLEKSEFKDE   84 (93)
T ss_pred             ------------------------------------------------CCCHHHHHHHHHHHHhCCCEEecCCCcCcCCc
Confidence                                                            57999999999999999999999999999999


Q ss_pred             CceeeeccC
Q psy11552        198 CILYNFWQD  206 (714)
Q Consensus       198 ~~~Yrf~~d  206 (714)
                      ++||||..|
T Consensus        85 ~lfYrF~~d   93 (93)
T cd04440          85 PLLFRFYAD   93 (93)
T ss_pred             CeEEEEecC
Confidence            999999875

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.

>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins

Probab=99.92  E-value=9.7e-26  Score=191.14  Aligned_cols=84  Identities=35%  Similarity=0.549  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhhcCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEee
Q psy11552         43 RAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFF  122 (714)
Q Consensus        43 ~~~~~l~~~~~~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~  122 (714)
                      ..|+.|++.+++..+.+||||++++  ++|++||+|+|+||||++++.                                
T Consensus         2 ~~g~~l~~~~~~~~~~~ik~R~~~~--~~y~~cF~GsElVdWL~~~~~--------------------------------   47 (85)
T cd04441           2 MRGQRLYEKLMSTENSILQVREEEG--VKYERTFVGSEFIDWLLQEGE--------------------------------   47 (85)
T ss_pred             cchHHHHHHHHcCCCCceeeeEeCC--EEcCCEeEchHHHHHHHHcCC--------------------------------
Confidence            3689999999999999999999999  999999999999999999987                                


Q ss_pred             cCCCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceee
Q psy11552        123 SETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYN  202 (714)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yr  202 (714)
                                                                 +.+|+||+.+||+|++.|+|+||.++|.|+|+++|||
T Consensus        48 -------------------------------------------~~sR~eAv~lgq~Ll~~gii~HV~~~h~F~D~~~fYr   84 (85)
T cd04441          48 -------------------------------------------AESRREAVQLCRRLLEHGIIQHVSNKHHFFDSNLLYQ   84 (85)
T ss_pred             -------------------------------------------CCCHHHHHHHHHHHHHCCCEEecCCCCCccCCCeeee
Confidence                                                       6999999999999999999999999999999999999


Q ss_pred             e
Q psy11552        203 F  203 (714)
Q Consensus       203 f  203 (714)
                      |
T Consensus        85 F   85 (85)
T cd04441          85 F   85 (85)
T ss_pred             C
Confidence            8

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.

>KOG1113|consensus

Probab=99.92  E-value=5.7e-25  Score=226.76  Aligned_cols=182  Identities=32%  Similarity=0.521  Sum_probs=167.3

Q ss_pred             CCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEe
Q psy11552        290 PLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSL  369 (714)
Q Consensus       290 ~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l  369 (714)
                      -.+++.+++..+.+++.++.+|++|+++++.++.+ +|++..+++|+.|+.||+.|+.||||.+|+++|++.+. .+.++
T Consensus       109 ~~pKd~e~~~~L~~a~r~~~LF~~Ld~eq~~~v~d-am~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv~~~-~v~~~  186 (368)
T KOG1113|consen  109 YIPKDDETRRRLEEAFRKNLLFANLDDEQLSQVLD-AMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYVNGT-YVTTY  186 (368)
T ss_pred             CCCCCHHHHHHHHHHHHhccccccCCHHHHHHHHH-hhceeeecCCcEEEecCCcCCcEEEEecceEEEEECCe-EEeee
Confidence            46788899999999999999999999999999999 78999999999999999999999999999999999976 89999


Q ss_pred             cCCCccchhhhccCCCcceeeec---------------------------------------------------------
Q psy11552        370 YAGEDFGKLALVNNAPRLIITSM---------------------------------------------------------  392 (714)
Q Consensus       370 ~~Gd~FGElaLl~~~pr~atv~A---------------------------------------------------------  392 (714)
                      +||..|||+||+++.||+|||+|                                                         
T Consensus       187 ~~g~sFGElALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s~pil~~l~k~er~kv~dal~~k  266 (368)
T KOG1113|consen  187 SPGGSFGELALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLESVPILESLEKLERAKVADALGTK  266 (368)
T ss_pred             CCCCchhhhHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhcchhhHHHHHHHHHhhhccccee
Confidence            99999999999999999999998                                                         


Q ss_pred             -------ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCC
Q psy11552        393 -------VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGP  465 (714)
Q Consensus       393 -------i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p  465 (714)
                             |+.+|+.|+.||+|.+|+|.+...+...+.++++||||||.+++.+.|+.              +++.+ .++
T Consensus       267 ~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyfge~al~~~~pr~--------------Atv~a-~~~  331 (368)
T KOG1113|consen  267 SYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYFGELALLKNLPRA--------------ATVVA-KGR  331 (368)
T ss_pred             eccCCceEEeccCCcceEEEecccccchhhccCCeEEEechhhhcchHHHHhhchhh--------------ceeec-cCC
Confidence                   88999999999999999999988665455599999999999999999998              78888 788


Q ss_pred             ceeeeecCCccccccchhhhhhh
Q psy11552        466 RRYKFRGPNRFQQITANLDVFLR  488 (714)
Q Consensus       466 ~~~~~l~r~~f~~~tpnI~~~i~  488 (714)
                      ..|..++++.|+...++-..++.
T Consensus       332 ~kc~~~dk~~ferllgpc~dilk  354 (368)
T KOG1113|consen  332 LKCAKLDKPRFERLLGPCQDILK  354 (368)
T ss_pred             ceeeeeChHHHHHHhhHHHHHHH
Confidence            89999999999988777655544

>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins

Probab=99.91  E-value=1.2e-25  Score=189.71  Aligned_cols=80  Identities=33%  Similarity=0.571  Sum_probs=74.5

Q ss_pred             HHHHHHHhhcCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552         45 GWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE  124 (714)
Q Consensus        45 ~~~l~~~~~~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~  124 (714)
                      |++||.++++  +.+||||+|++  ++|++||+|+||||||++++.                                  
T Consensus         2 ~~~~~~~~~~--~~~IkdR~~~~--r~y~~cF~GselVdWL~~~~~----------------------------------   43 (82)
T cd04442           2 GEQLRLRLHE--AKVIKDRRHHL--RTYPNCFVGKELIDWLIEHKE----------------------------------   43 (82)
T ss_pred             cceeEEecCC--CCeeeeeEECC--EEcCceeEcHHHHHHHHHcCC----------------------------------
Confidence            6788887765  68999999999  999999999999999999988                                  


Q ss_pred             CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCc-cccCcCceeee
Q psy11552        125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQ-AFRDKCILYNF  203 (714)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~-~F~d~~~~Yrf  203 (714)
                                                               +.+|+||+.+||+||+.|+|+||.++| .|+|+++||||
T Consensus        44 -----------------------------------------~~sR~eAv~lgq~Ll~~gvi~HV~~~h~~F~D~~~fYrF   82 (82)
T cd04442          44 -----------------------------------------ASDRETAIKIMQKLLDHSIIHHVCDEHKEFKDAKLFYRF   82 (82)
T ss_pred             -----------------------------------------CCCHHHHHHHHHHHHHCCCEEeccCCcCceeCCceeeeC
Confidence                                                     589999999999999999999999999 79999999998

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.

>KOG3541|consensus

Probab=99.90  E-value=5.2e-24  Score=221.47  Aligned_cols=193  Identities=28%  Similarity=0.413  Sum_probs=167.0

Q ss_pred             ccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcc
Q psy11552        479 ITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSK  558 (714)
Q Consensus       479 ~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~  558 (714)
                      ....++.++.|||+++..+++++|.....+.|++++++||++|.+|.+++|||++|||+.|++-++|.|||+||.++.  
T Consensus       259 ~~ysie~y~~wfn~Lsa~~Atevlk~~kk~~rsamlef~iD~arec~nignfnSmmai~~~lnL~avarlkktw~kv~--  336 (477)
T KOG3541|consen  259 YDYSIERYMSWFNHLSALCATEVLKAAKKQTRSAMLEFLIDLARECFNIGNFNSMMAIGPGLNLNAVARLKKTWIKVR--  336 (477)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhhhccCCCCchHHHHHHHHHHHH--
Confidence            345789999999999999999999999889999999999999999999999999999999999999999999999873  


Q ss_pred             hHHHHHHHHhccCCCCchHHHHHHHHhC-----------CCCccccccchhhchhccccCCCCcc-CCcccHHHHHHHHH
Q psy11552        559 SKKTYTELEALIDPSKNHRAYRQAVSKL-----------QSPVIPFMPLLLKDLAFTHDGNKTVV-DGLVNFEKMHMFAQ  626 (714)
Q Consensus       559 ~~~~~~~l~~l~~~~~n~~~yR~~l~~~-----------~~p~IPflg~~L~Dl~~i~egn~~~~-~glINf~K~~~i~~  626 (714)
                       ...|+-|+--++|+.||.+||.+++..           ....|||+.++|+|+.+++.+.+.++ +|.|||.|+..|+.
T Consensus       337 -taK~e~lehqmdps~nflsyr~t~Kaa~wrs~sang~~ekaviPff~l~Lkdl~~i~~~h~~~l~Nghinf~k~~~i~~  415 (477)
T KOG3541|consen  337 -TAKFEALEHQMDPSSNFLSYRLTDKAAKWRSPSANGAPEKAVIPFFTLFLKDLLDISARHRLFLPNGHINFLKFVGIEG  415 (477)
T ss_pred             -HHHHHHHHhcCCchhhhHHHHHHHHHHhhcCccccCCCccccccchhhhHHHHHHHHhhhcccCCCchhHHHHHHhHHh
Confidence             455788999999999999999988842           22489999999999999999999998 79999999999966


Q ss_pred             HHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCCCChHHHHHHHhhCCCCCCHHHHHHHH
Q psy11552        627 TLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMS  706 (714)
Q Consensus       627 ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~~~~~~~~~~~~i~~yi~~~~~~~~~~~L~~lS  706 (714)
                      .++.+..++.                                  ..-.++.     .+.+.+|+.-.+++. ++.++.+|
T Consensus       416 qlr~v~~W~~----------------------------------v~c~fek-----~p~v~sylliaevls-e~alm~~s  455 (477)
T KOG3541|consen  416 QLRTVELWSG----------------------------------VACPFEK-----VPNVNSYLLIAEVLS-EPALMRAS  455 (477)
T ss_pred             hhhhhhhhhc----------------------------------ccchHhh-----CchHHhHHhhhhhcc-cchhhhhe
Confidence            6665554433                                  2222232     668999999888876 78899999


Q ss_pred             hhcCCCCC
Q psy11552        707 QKLEPRRS  714 (714)
Q Consensus       707 ~~lEPr~~  714 (714)
                      .+.||+.+
T Consensus       456 fe~epPen  463 (477)
T KOG3541|consen  456 FESEPPEN  463 (477)
T ss_pred             ecccCCcc
Confidence            99999874

>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins

Probab=99.90  E-value=3.2e-24  Score=182.10  Aligned_cols=81  Identities=27%  Similarity=0.452  Sum_probs=76.0

Q ss_pred             HHHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552         46 WVLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE  124 (714)
Q Consensus        46 ~~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~  124 (714)
                      +|+++.++..+ ..+||||+|++  ++|++||+|+|+||||++++.                                  
T Consensus         2 ~qf~~~~~~~~~~~~ikdR~~~~--~~y~~cF~GselVdWL~~~~~----------------------------------   45 (83)
T cd04443           2 EQFVRYHLDQCRQDIVKDRRCGL--RTYKGVFCGCDLVSWLIEVGL----------------------------------   45 (83)
T ss_pred             hHHHHHHHhcccchhhccceecc--eeccccccHHHHHHHHHHcCC----------------------------------
Confidence            68888888777 58999999999  999999999999999999877                                  


Q ss_pred             CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeee
Q psy11552        125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNF  203 (714)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf  203 (714)
                                                               +.+|+||+.+||+|++.|+|+||.++|.|+|+++||||
T Consensus        46 -----------------------------------------~~sR~eAv~lg~~Ll~~G~i~HV~~~~~F~D~~~~YrF   83 (83)
T cd04443          46 -----------------------------------------AQDRGEAVLYGRRLLQGGVLQHITNEHHFRDENLLYRF   83 (83)
T ss_pred             -----------------------------------------CCCHHHHHHHHHHHHHCCCEEecCCCcCEecCCeeEeC
Confidence                                                     68999999999999999999999999999999999998

GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.

>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins

Probab=99.88  E-value=2.5e-23  Score=176.06  Aligned_cols=76  Identities=28%  Similarity=0.589  Sum_probs=70.5

Q ss_pred             HhhcCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCchh
Q psy11552         51 LLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPM  130 (714)
Q Consensus        51 ~~~~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~~~  130 (714)
                      .++...+.+||||+|++  ++|++||+|+|+||||++++.                                        
T Consensus         6 ~~~~~~~~~ikdr~~~~--~~~~~cF~GselVdWL~~~~~----------------------------------------   43 (81)
T cd04439           6 KMMCKQGSLIKDRRRKL--STFPKCFLGNEFVSWLLEIGE----------------------------------------   43 (81)
T ss_pred             HHhccCCCceEeeEECc--EEcCceeEhHHHHHHHHHcCC----------------------------------------
Confidence            34556688999999999  999999999999999999987                                        


Q ss_pred             hhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeee
Q psy11552        131 ERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNF  203 (714)
Q Consensus       131 ~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf  203 (714)
                                                         +.+|+||+.+||+|++.|+|+||.++|.|+|+++||||
T Consensus        44 -----------------------------------~~~r~eAv~lg~~Ll~~G~i~HV~~~h~FkD~~~fYrF   81 (81)
T cd04439          44 -----------------------------------ISKPEEGVNLGQALLENGIIHHVSDKHQFKNEQVLYRF   81 (81)
T ss_pred             -----------------------------------CCCHHHHHHHHHHHHHCCCEEecCCCCCEecCCeEEeC
Confidence                                               58899999999999999999999999999999999998

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.

>KOG0614|consensus

Probab=99.87  E-value=1.8e-22  Score=215.88  Aligned_cols=184  Identities=22%  Similarity=0.353  Sum_probs=164.8

Q ss_pred             CCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEE
Q psy11552        288 GKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVT  367 (714)
Q Consensus       288 ~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~  367 (714)
                      .+...++....+.|.+++..+.++++|+..++.+|.. +|+.+.+++|..|++|||+|+.+|++.+|+++|.+.+. .++
T Consensus       139 l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~-~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~~g~-ll~  216 (732)
T KOG0614|consen  139 LPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVD-CMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSREGK-LLG  216 (732)
T ss_pred             cccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHH-hhCcccccCCcEEEecCCCCceEEEeecceEEEeeCCe-eee
Confidence            3455666777889999999999999999999999999 89999999999999999999999999999999998877 899


Q ss_pred             EecCCCccchhhhccCCCcceeeec-------------------------------------------------------
Q psy11552        368 SLYAGEDFGKLALVNNAPRLIITSM-------------------------------------------------------  392 (714)
Q Consensus       368 ~l~~Gd~FGElaLl~~~pr~atv~A-------------------------------------------------------  392 (714)
                      ++++|..|||+|++++++|+|||.|                                                       
T Consensus       217 ~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~r~~~~~~fLrsv~~~q~l~Ee~L~KiaD~le  296 (732)
T KOG0614|consen  217 KMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLERHEQYMNFLRSVPLFQNLPEELLLKIADVLE  296 (732)
T ss_pred             ccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence            9999999999999999999999997                                                       


Q ss_pred             ---------ccccCCCCceEEEEEeCeEEEEeecc-----eeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeec
Q psy11552        393 ---------VFHQGDEGKSWYIIIQGSVDVVIYGK-----GCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTT  458 (714)
Q Consensus       393 ---------i~~~g~~~~~~YiI~~G~~~~~~~~~-----~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~it  458 (714)
                               |+++|+.|+.||+|-.|+|.++...+     ..+..+..||||||.+|+.++.|.              ++
T Consensus       297 ~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~FGE~al~~edvRt--------------An  362 (732)
T KOG0614|consen  297 EEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDYFGERALLGEDVRT--------------AN  362 (732)
T ss_pred             HHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccchhhHHHhhccCccc--------------hh
Confidence                     89999999999999999999998552     235588999999999999999887              66


Q ss_pred             cccccCCceeeeecCCccccccchhhhhh
Q psy11552        459 APDIKGPRRYKFRGPNRFQQITANLDVFL  487 (714)
Q Consensus       459 v~ei~~p~~~~~l~r~~f~~~tpnI~~~i  487 (714)
                      +.+....+.|+++.++.|.+..+.+..+.
T Consensus       363 iia~~~gv~cl~lDresF~~liG~l~~l~  391 (732)
T KOG0614|consen  363 IIAQAPGVECLTLDRESFKKLIGDLEELK  391 (732)
T ss_pred             hhccCCCceEEEecHHHHHHhcccHHHhh
Confidence            66633336889999999998888887776

>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins

Probab=99.86  E-value=4.9e-22  Score=168.62  Aligned_cols=78  Identities=29%  Similarity=0.460  Sum_probs=69.9

Q ss_pred             HHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCC
Q psy11552         48 LRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETE  126 (714)
Q Consensus        48 l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~  126 (714)
                      |+..+.... +..||||++++  ++|++||+|+|+||||++++.                                    
T Consensus         2 l~~~m~~~~~gv~i~drr~~~--~~y~~cF~GselVdWL~~~~~------------------------------------   43 (81)
T cd04448           2 LWEKICRSSTGIEFQDHRYRL--RTYTNCILGKELVNWLIRQGK------------------------------------   43 (81)
T ss_pred             HHHHhhCcCCCCeeEEEEECC--EEcCcccChHHHHHHHHHcCC------------------------------------
Confidence            344555444 56799999999  999999999999999999887                                    


Q ss_pred             CchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceee
Q psy11552        127 TIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYN  202 (714)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yr  202 (714)
                                                             +.+|+||+++||+|++.|+|+||.++|.|+|+++|||
T Consensus        44 ---------------------------------------~~~R~eAv~~gq~Ll~~g~i~hV~~~~~F~D~~~~Yr   80 (81)
T cd04448          44 ---------------------------------------AATRVQAIAIGQALLDAGWIECVSDDDLFRDEYALYK   80 (81)
T ss_pred             ---------------------------------------CCCHHHHHHHHHHHHHCCCEEecCCCCccccCccccC
Confidence                                                   6999999999999999999999999999999999997

PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.

>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins

Probab=99.81  E-value=3.2e-20  Score=158.91  Aligned_cols=79  Identities=27%  Similarity=0.424  Sum_probs=70.6

Q ss_pred             HHHhhcCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCc
Q psy11552         49 RTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETI  128 (714)
Q Consensus        49 ~~~~~~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~  128 (714)
                      -..|.+..+..|+||++++  ++|++||+|+|+||||+++...                                     
T Consensus         5 ~~~m~~~~~~~i~~r~~~~--~~~~~cF~G~e~VdWL~~~~~~-------------------------------------   45 (83)
T cd04449           5 AEAMRDPSGIGIFDRSWHK--GLPSNCFIGSEAVSWLINNFED-------------------------------------   45 (83)
T ss_pred             HHHHhCCCCCceeechhcC--ccCCcceEhHHHHHHHHHhCCC-------------------------------------
Confidence            3445555555899999999  9999999999999999999774                                     


Q ss_pred             hhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeee
Q psy11552        129 PMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNF  203 (714)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf  203 (714)
                                                           +.+|+||+.+||.|++.|+|+||.++|.|+|+++|||+
T Consensus        46 -------------------------------------~~~r~eAv~lgq~Ll~~g~I~hv~~~~~F~d~~~~Yr~   83 (83)
T cd04449          46 -------------------------------------VDTREEAVELGQELMNEGLIEHVSGRHPFLDGFYFYYI   83 (83)
T ss_pred             -------------------------------------CCCHHHHHHHHHHHHHCCCEEecCCCCCccCCCEeEeC
Confidence                                                 69999999999999999999999999999999999996

DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.

>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins

Probab=99.80  E-value=7.2e-20  Score=156.06  Aligned_cols=77  Identities=27%  Similarity=0.406  Sum_probs=67.8

Q ss_pred             HhhcCCCCc-cccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCch
Q psy11552         51 LLLNDESGT-LRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIP  129 (714)
Q Consensus        51 ~~~~~~~~~-i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~~  129 (714)
                      .|...++.+ ||||+|++  ++|++||+|+|+||||+++.+.                                      
T Consensus         6 ~m~~~~~Gl~ikdR~~~~--~~~p~~F~GsdlVdWL~~~~~~--------------------------------------   45 (84)
T cd04438           6 VMRRPDSGLEIKDRMWLK--ITIPNSFIGSDLVDWLLSHVEG--------------------------------------   45 (84)
T ss_pred             hhcCCCCCCceEEEEEee--EECCccccchHHHHHHHHhCCC--------------------------------------
Confidence            344445444 99999999  9999999999999999999874                                      


Q ss_pred             hhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeeec
Q psy11552        130 MERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFW  204 (714)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf~  204 (714)
                                                          +.+|+||+.+||.|++.|+|+||.++|.|.|+ .+|+|-
T Consensus        46 ------------------------------------~~~R~eAv~~g~~Ll~~G~i~HV~~~h~F~d~-~yy~~~   83 (84)
T cd04438          46 ------------------------------------LTDRREARKYASSLLKLGYIRHTVNKITFSEQ-CYYVFG   83 (84)
T ss_pred             ------------------------------------CCCHHHHHHHHHHHHHCCcEEecCCCccccCC-eEEecC
Confidence                                                69999999999999999999999999999975 899884

Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.

>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins

Probab=99.77  E-value=2.5e-19  Score=154.73  Aligned_cols=75  Identities=24%  Similarity=0.304  Sum_probs=63.5

Q ss_pred             CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCchhhhHHHH
Q psy11552         57 SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYS  136 (714)
Q Consensus        57 ~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~~~~~~~~~  136 (714)
                      +.-|||||+|+  |+|++||+|+||||||+++..                                              
T Consensus        11 ~v~ikdRr~~l--k~y~~CF~GsEaVDwL~~~l~----------------------------------------------   42 (95)
T cd04446          11 QVEVKKRRHNL--KSYHDCFLGSEAVDVVLAHLM----------------------------------------------   42 (95)
T ss_pred             cCcccceeeec--eecccccchHHHHHHHHHHHh----------------------------------------------
Confidence            45899999999  999999999999999988643                                              


Q ss_pred             hhcCCCcccccccchhhHHHHHHhhC--CCccCCHHHHHHHHHHHHhcCcceec-------CCCccccCc-Cceee
Q psy11552        137 LYSGGRTIARRCASGSELVDWLMSLA--PSLAVSRQITTGMWQALLEEGVIYHV-------NGEQAFRDK-CILYN  202 (714)
Q Consensus       137 ~~~~~~~~~~~cf~G~e~vdwl~~~~--~~~~~~r~~av~l~q~Ll~~g~i~hv-------~~~~~F~d~-~~~Yr  202 (714)
                                             ++.  .....+|+|||.+||+||++|+|+||       ..++.|+|+ ..|||
T Consensus        43 -----------------------~n~~f~~~~~tR~~Av~l~q~Ll~~gvi~~V~~~~~~~~k~~~F~D~~~~lYR   95 (95)
T cd04446          43 -----------------------QNKYFGDVDVPRAKAVRLCQALMDCRVFEAVGTKVFKKKKRAVFEDSSSSLYR   95 (95)
T ss_pred             -----------------------hccccCcccCCHHHHHHHHHHHHHcCCeeeccchhccccccccccCCCcCccC
Confidence                                   220  00147999999999999999999999       577999999 79997

DEPDC4 is a DEP domain containing protein of unknown function.

>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins

Probab=99.73  E-value=1.8e-18  Score=146.78  Aligned_cols=78  Identities=31%  Similarity=0.511  Sum_probs=66.2

Q ss_pred             CCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCchhhhHHH
Q psy11552         56 ESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYY  135 (714)
Q Consensus        56 ~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~~~~~~~~  135 (714)
                      .+-.||+||+|+  |+|++||+|+||||||+++..+                                 ..+|       
T Consensus        12 ~g~~vk~rR~~l--r~y~~CF~gsEAVDwL~~~l~~---------------------------------n~~f-------   49 (92)
T cd04447          12 AGMPLRKHRQHF--KSYENCFTASEAVDWLHELLRS---------------------------------NSNF-------   49 (92)
T ss_pred             ccCChHHHHHhc--ccCccccchHHHHHHHHHHHHh---------------------------------cccc-------
Confidence            345899999999  9999999999999999999542                                 1111       


Q ss_pred             HhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCC---CccccCcCceeee
Q psy11552        136 SLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNG---EQAFRDKCILYNF  203 (714)
Q Consensus       136 ~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~---~~~F~d~~~~Yrf  203 (714)
                                                |+  ..+|.+||.++|.|++.++|+||.+   ++.|+|++.||||
T Consensus        50 --------------------------g~--~vtR~~av~l~qkll~~hVie~V~g~~~~~~FeD~~~lYRF   92 (92)
T cd04447          50 --------------------------GP--EVTRQQTVQLLKKFLKNHVIEDIKGRWGKEDLEDNNHLYRF   92 (92)
T ss_pred             --------------------------CC--CCCHHHHHHHHHHHHHcCCchhhccccccCccccccccccC
Confidence                                      22  5799999999999999999999955   4689999999998

BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.

>KOG3417|consensus

Probab=99.69  E-value=2.3e-17  Score=198.20  Aligned_cols=193  Identities=24%  Similarity=0.341  Sum_probs=174.1

Q ss_pred             HHHHHHhh---hheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHHH
Q psy11552        443 QLHMYLEQ---MAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIK  519 (714)
Q Consensus       443 ~~~~~l~~---~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~  519 (714)
                      +++.+++.   ..+|+.+.+.|.    +...|.+.......|++..++.++|.++.||..+|+..+.++.|+.++.++++
T Consensus       218 e~~~~lt~lle~~~~~~iq~~e~----~~~~~~~~~~~~~~P~~~~~~~~~~~~s~wv~~~il~~e~l~~r~~~~~~~L~  293 (840)
T KOG3417|consen  218 ELSEQLTSLLESPDFRKIQPFEL----LSQSWLKKDKKINSPNIESSTSRFNHLSSWVEQEILNAEQLEERAEVILHFLE  293 (840)
T ss_pred             hhccccccccccccccccCHHHH----HHhhhhhcccccCCCchhhhhhcccchHHHHHHHHhccccHHHHHHhhHHHHH
Confidence            36666664   357777888886    34555666777889999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCC-Cccccccchh
Q psy11552        520 LAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS-PVIPFMPLLL  598 (714)
Q Consensus       520 iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~-p~IPflg~~L  598 (714)
                      +|.++.+++|||++++++.|+++++++||++||+.++.+..+.+..+..++...+||+.||..+..++. ||||++|+++
T Consensus       294 ~a~~~~el~n~~~~~~~v~~~~~s~i~~L~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~yr~~l~~~~~~~~ip~~~~~l  373 (840)
T KOG3417|consen  294 VAAKLSELNNLNSLMEVVSGLQSSPISRLKKTGSYLSSEIKKKLILLTELTSLLDNVQNYRRYLQSCNISPCIPILGVYL  373 (840)
T ss_pred             HhhhhhhccccccHHHHHhccccchhhhhhhhhccccccchhhhhhHHHHhhcchHHHHHHHHhhhcccCcccccccccc
Confidence            999999999999999999999999999999999999997888888888888888899999999999999 9999999999


Q ss_pred             hc-hhccccCCCCccC--C--cccHHHHHHHHHHHHHHhhhhcccC
Q psy11552        599 KD-LAFTHDGNKTVVD--G--LVNFEKMHMFAQTLRTLRYCRTRHL  639 (714)
Q Consensus       599 ~D-l~~i~egn~~~~~--g--lINf~K~~~i~~ii~~i~~~q~~~~  639 (714)
                      .| +..+++++|++..  +  .+++.|+..+.+++.++..++++.+
T Consensus       374 ~d~~~~l~~~~p~~~~~~~~~e~~~~~~~~~~~i~~elq~l~~~~~  419 (840)
T KOG3417|consen  374 LDSLVKLNEALPTKLLRIGERELSFSKLKVLLEIISELQDLQNKEL  419 (840)
T ss_pred             HHHHHhhhhcCCccccccccccccchhhhHHHHHHHHHHHHhcccc
Confidence            99 9999999999884  4  8999999999999999999888654

>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways

Probab=99.69  E-value=4.3e-17  Score=137.02  Aligned_cols=71  Identities=34%  Similarity=0.565  Sum_probs=61.4

Q ss_pred             CccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCchhhhHHHHh
Q psy11552         58 GTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYSL  137 (714)
Q Consensus        58 ~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~~~~~~~~~~  137 (714)
                      ..|+||++++  ++|++||+|+|+||||+++...                                              
T Consensus         2 v~i~~~~~~~--~~~~~~F~G~e~v~WL~~~~~~----------------------------------------------   33 (74)
T PF00610_consen    2 VPIKDRRKRL--KTYPNCFTGSEAVDWLMDNFEG----------------------------------------------   33 (74)
T ss_dssp             SCSEEEECSS--EEECCEEEHHHHHHHHHHTSCT----------------------------------------------
T ss_pred             CccEEEEECC--EEcCCEeEhHHHHHHHHHhccc----------------------------------------------
Confidence            4688999988  8899999988888888875431                                              


Q ss_pred             hcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCc-cccCc-Cceeee
Q psy11552        138 YSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQ-AFRDK-CILYNF  203 (714)
Q Consensus       138 ~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~-~F~d~-~~~Yrf  203 (714)
                                                 .+.+|+||+.+||.|++.|+|+||.+++ .|+|+ +.||||
T Consensus        34 ---------------------------~~~~r~eA~~l~q~Ll~~g~i~~v~~~~~~F~d~~~~~Yrf   74 (74)
T PF00610_consen   34 ---------------------------FVRDREEAVQLGQELLDHGFIEHVSDKSKQFKDSKNSLYRF   74 (74)
T ss_dssp             ---------------------------STSSHHHHHHHHHHHHHCTSEEESSSSSHSS-SSSSSEEEE
T ss_pred             ---------------------------cccCHHHHHHHHHHHHHCCCEEECCCCCCCEECCCCcEEEC
Confidence                                       1689999999999999999999999998 89999 999998

It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....

>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins

Probab=99.67  E-value=3.2e-17  Score=144.06  Aligned_cols=86  Identities=24%  Similarity=0.317  Sum_probs=64.0

Q ss_pred             HHHHhhc-CCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCC
Q psy11552         48 LRTLLLN-DESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETE  126 (714)
Q Consensus        48 l~~~~~~-~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~  126 (714)
                      |...|.+ ..+.-+.+|++++  ++|++||+|+|+||||++++.                                    
T Consensus         5 L~~~mq~~~~Gik~~~~r~~~--k~y~~CF~Gse~VDWLv~~~~------------------------------------   46 (109)
T cd04444           5 IVDKMHDSSTGIRHSPNMEQG--STYKKTFLGSALVDWLISNSF------------------------------------   46 (109)
T ss_pred             HHHHHhCCCcCcchhhhhhcc--ccccccccchHHHHHHHHCCC------------------------------------
Confidence            4445544 3466777999999  999999999999999999988                                    


Q ss_pred             CchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecC-----------CCcccc
Q psy11552        127 TIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVN-----------GEQAFR  195 (714)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~-----------~~~~F~  195 (714)
                                                             +.+|.||+.+||+||+.|+|+||.           .++.|.
T Consensus        47 ---------------------------------------~i~R~EAv~l~q~Lmd~gli~hV~~~s~~~~~~~~~~~~f~   87 (109)
T cd04444          47 ---------------------------------------AASRLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFL   87 (109)
T ss_pred             ---------------------------------------CCCHHHHHHHHHHHHhCCchhhHHHHhhhhhhccccccccc
Confidence                                                   356777777777777777777762           146798


Q ss_pred             Cc-CceeeeccCccCC
Q psy11552        196 DK-CILYNFWQDKEGS  210 (714)
Q Consensus       196 d~-~~~Yrf~~d~~~~  210 (714)
                      |+ ..||+|....+..
T Consensus        88 d~s~aly~F~~~~~~~  103 (109)
T cd04444          88 DDSTALYTFAESYKKK  103 (109)
T ss_pred             cCchHHHHhHHHHHhc
Confidence            87 5999998776543

Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.

>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin

Probab=99.63  E-value=4.1e-16  Score=132.12  Aligned_cols=71  Identities=42%  Similarity=0.621  Sum_probs=63.9

Q ss_pred             CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCchhhhHHHH
Q psy11552         57 SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYS  136 (714)
Q Consensus        57 ~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~~~~~~~~~  136 (714)
                      +..++||++++  ++|++||+|+|+|+||++++.                                              
T Consensus         4 gl~~~~~~~~~--~~~~~~F~G~e~v~wL~~~~~----------------------------------------------   35 (77)
T smart00049        4 GLKLRDRKYFL--KTYPNCFTGSELVDWLMDNLE----------------------------------------------   35 (77)
T ss_pred             CcccEEEEECC--EECcceeEcHHHHHHHHHcCC----------------------------------------------
Confidence            34568899988  889999998888888888877                                              


Q ss_pred             hhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecC--CCccccCcCceeeec
Q psy11552        137 LYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVN--GEQAFRDKCILYNFW  204 (714)
Q Consensus       137 ~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~--~~~~F~d~~~~Yrf~  204 (714)
                                                   +.+|.+|+.+||.|++.|+|+||.  ..+.|+|+..||||.
T Consensus        36 -----------------------------~~~r~eA~~l~~~ll~~g~i~~v~~~~~~~F~d~~~~Yrf~   76 (77)
T smart00049       36 -----------------------------IIDREEAVHLGQLLLDEGLIHHVNGPNKHTFKDSKALYRFT   76 (77)
T ss_pred             -----------------------------cCCHHHHHHHHHHHHHCCCEEEeCCCCcCccccCCEEEEeC
Confidence                                         689999999999999999999999  789999999999996

Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).

>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered

Probab=99.56  E-value=4.4e-15  Score=127.00  Aligned_cols=72  Identities=39%  Similarity=0.640  Sum_probs=64.4

Q ss_pred             cCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCchhhhH
Q psy11552         54 NDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERI  133 (714)
Q Consensus        54 ~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~~~~~~  133 (714)
                      ...+..++||++++  ++|++||+|+|+|+||+++..                                           
T Consensus         9 ~~~~~~~~~~~~~~--~~~~~~F~G~e~v~WL~~~~~-------------------------------------------   43 (81)
T cd04371           9 SDSGVPIKDRKYHL--KTYPNCFTGSELVDWLLDNLE-------------------------------------------   43 (81)
T ss_pred             cCCCCccEEEEECC--EECCceeEcHHHHHHHHHhCC-------------------------------------------
Confidence            33456889999998  999999999999999988887                                           


Q ss_pred             HHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCC-CccccCcCceee
Q psy11552        134 YYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNG-EQAFRDKCILYN  202 (714)
Q Consensus       134 ~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~-~~~F~d~~~~Yr  202 (714)
                                                      +.+|++|+.+||.|++.|+|+||.+ ++.|.|+..||+
T Consensus        44 --------------------------------~~~r~ea~~~~~~ll~~g~i~~v~~~~~~F~d~~~~Y~   81 (81)
T cd04371          44 --------------------------------AITREEAVELGQALLKHGLIHHVSDDKHTFRDSYALYR   81 (81)
T ss_pred             --------------------------------CCCHHHHHHHHHHHHHCCCEEEeCCCCCccccCCeecC
Confidence                                            5899999999999999999999999 999999988885

The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.

>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7

Probab=99.55  E-value=6.3e-15  Score=127.82  Aligned_cols=74  Identities=20%  Similarity=0.302  Sum_probs=63.9

Q ss_pred             CCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCchhhhHHH
Q psy11552         56 ESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYY  135 (714)
Q Consensus        56 ~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~~~~~~~~  135 (714)
                      .+.-+++||+++  ++|++||+|+++|+||+++..                                             
T Consensus        11 ~Gv~~~~~r~~~--~~~~~~F~G~~~v~WL~~~~~---------------------------------------------   43 (88)
T cd04450          11 VGVRMRTEKSFL--TTVPYAFTGKAIVQWLMDCTD---------------------------------------------   43 (88)
T ss_pred             CCeeeeeeEEee--eEcCceeEhHHHHHHHHHCCC---------------------------------------------
Confidence            366678888888  888888888888888887766                                             


Q ss_pred             HhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCcc-ccCcCceeeeccC
Q psy11552        136 SLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQA-FRDKCILYNFWQD  206 (714)
Q Consensus       136 ~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~-F~d~~~~Yrf~~d  206 (714)
                                                    +.+|+||+.+|+.|++.|+|+||.+++. |+|++.||||...
T Consensus        44 ------------------------------~~~~~EA~~~~~~ll~~gli~~V~~~~~~~~~~~~~yr~~~~   85 (88)
T cd04450          44 ------------------------------VVDPSEALEIAALFVKYGLITPVSDHRSLLKPDETLYRFQAP   85 (88)
T ss_pred             ------------------------------CCCHHHHHHHHHHHHHCCCEEEecCCcccccCCCceEecccc
Confidence                                          6999999999999999999999998765 8999999999843

This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.

>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins

Probab=99.29  E-value=2.9e-12  Score=109.10  Aligned_cols=69  Identities=26%  Similarity=0.391  Sum_probs=60.0

Q ss_pred             HHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecC----------CCccccCc-Cceeee
Q psy11552        135 YSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVN----------GEQAFRDK-CILYNF  203 (714)
Q Consensus       135 ~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~----------~~~~F~d~-~~~Yrf  203 (714)
                      .+.+-...++|++||+|+.+||||+++..  +.+|.||+.+++.|+++|+|.+|.          .+..|-|+ ..||+|
T Consensus        18 ~~~~~~~~tv~~hcftGsdVVdWLv~~~~--v~~r~EAl~las~Ll~eGyL~P~gd~sk~a~~~~~~~~fld~~~aly~f   95 (99)
T cd04445          18 ELNLEKDKKVFNHCFTGSCVIDWLVSNQS--VRNRQEGLMLASSLLNEGYLQPAGDTSKNAADGLAENPFLDNPDAFYYF   95 (99)
T ss_pred             hhhHHHhhccccceecccHHHHHHHHhhc--ccchHHHHHHHHHHHHcCCeeecCccchhHhhccccccccCCccceeec
Confidence            34455567899999999999999999987  789999999999999999999993          35688887 799999


Q ss_pred             cc
Q psy11552        204 WQ  205 (714)
Q Consensus       204 ~~  205 (714)
                      .+
T Consensus        96 ~d   97 (99)
T cd04445          96 PD   97 (99)
T ss_pred             cc
Confidence            64

Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.

>KOG3417|consensus

Probab=99.27  E-value=1.7e-11  Score=147.89  Aligned_cols=152  Identities=25%  Similarity=0.485  Sum_probs=125.2

Q ss_pred             cccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCc
Q psy11552        478 QITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPS  557 (714)
Q Consensus       478 ~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~  557 (714)
                      ....+...+...++.+++|+.+.|........|      |+.++.+|..++||.+++++.++|.+++++|+..+|....+
T Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~s------~~~~~~~~~~~~~~~~l~~~~s~l~s~~~~~~~~~~~l~~~  716 (840)
T KOG3417|consen  643 EKSKKDLAFTETFNLVSFWSSTIILTQQPAKRS------FIHVAKFCKIMKNFRTLMNINSALASSPIHRSTPLWRLEWP  716 (840)
T ss_pred             ccccchHHHHHHHhhhhhhhHHhhhccccccch------hHHHHhhhhhhCchhhhhHHHHHhccchhhhcchhhcccch
Confidence            455667788899999999999988888776666      99999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhccCCCCchHHHHHH-HHhCCCCccccccchhhchhccccCCCCccCCcccHHHHHH---HHHHHHHHhh
Q psy11552        558 KSKKTYTELEALIDPSKNHRAYRQA-VSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHM---FAQTLRTLRY  633 (714)
Q Consensus       558 ~~~~~~~~l~~l~~~~~n~~~yR~~-l~~~~~p~IPflg~~L~Dl~~i~egn~~~~~glINf~K~~~---i~~ii~~i~~  633 (714)
                      +....+..+..++....|+..||.+ +....+||+||+|++|+||||.++|||++.++.+|+.++.+   +..+++.+..
T Consensus       717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~cvP~~~~~l~dltf~~~gnpd~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (840)
T KOG3417|consen  717 KDIREFSALSPLVIDKSNSSTYRRALLSVPEPPCVPFLGVILQDLTFVHTGNPDYLDSVVNHGKFDKRTNIKDIVQEVQK  796 (840)
T ss_pred             hhHHHhhccccchhcccccHHHHHHHhcCCCCCCcCceeEEeecceeecCCCCCccccccchhHHHHHHHHHHHHHHHHH
Confidence            9998888888877766666555555 44588999999999999999999999999987666655554   4334444444


Q ss_pred             hh
Q psy11552        634 CR  635 (714)
Q Consensus       634 ~q  635 (714)
                      +|
T Consensus       797 ~~  798 (840)
T KOG3417|consen  797 FQ  798 (840)
T ss_pred             hc
Confidence            33

>KOG0614|consensus

Probab=99.11  E-value=6.2e-11  Score=128.23  Aligned_cols=94  Identities=27%  Similarity=0.398  Sum_probs=86.2

Q ss_pred             HHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce-----EEEEecCC
Q psy11552        298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG-----CVTSLYAG  372 (714)
Q Consensus       298 ~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~-----~v~~l~~G  372 (714)
                      .+...++|..+++|.+|+++.+..++++ +.+.+|.+|+.|++||+.|+.||||.+|.|.|...+.+     .+.+++.|
T Consensus       267 ~~~~~~fLrsv~~~q~l~Ee~L~KiaD~-le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kG  345 (732)
T KOG0614|consen  267 HEQYMNFLRSVPLFQNLPEELLLKIADV-LEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKG  345 (732)
T ss_pred             HHHHHHHHHhhhhhccCCHHHHHHHHHH-HHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhcccc
Confidence            4567889999999999999999999995 55669999999999999999999999999999987654     68899999


Q ss_pred             CccchhhhccCCCcceeeec
Q psy11552        373 EDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       373 d~FGElaLl~~~pr~atv~A  392 (714)
                      |+|||-||+....|+|.++|
T Consensus       346 d~FGE~al~~edvRtAniia  365 (732)
T KOG0614|consen  346 DYFGERALLGEDVRTANIIA  365 (732)
T ss_pred             chhhHHHhhccCccchhhhc
Confidence            99999999999999999988

>KOG0498|consensus

Probab=99.10  E-value=6e-10  Score=128.79  Aligned_cols=152  Identities=19%  Similarity=0.240  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHH-HHHHhCCccCCCCCHHH
Q psy11552        240 AILRYILRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQI-YEELLHLKPLHHLSNSV  318 (714)
Q Consensus       240 ~~~r~ilr~~~k~l~~r~l~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i-~~~L~~~~~F~~Ls~~~  318 (714)
                      ...|.-.+.+.+.-..|-||......+.+-++.+-....--+++..+..-|.....+-...+ .+.+.++|+|+++++.-
T Consensus       355 ~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~  434 (727)
T KOG0498|consen  355 EEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGL  434 (727)
T ss_pred             HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHH
Confidence            34445555677777778888877777765554443332233334444444555444444555 55666799999999999


Q ss_pred             HHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EEEEecCCCccc-hhhhccC-CCcceeeec
Q psy11552        319 RRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFG-KLALVNN-APRLIITSM  392 (714)
Q Consensus       319 l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v~~l~~Gd~FG-ElaLl~~-~pr~atv~A  392 (714)
                      +..|+. .+...+|.+|+.|++|||+.+.||||.+|.+++...++|   .++.|++||+|| |+..... .|.++||+|
T Consensus       435 L~al~~-rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVra  512 (727)
T KOG0498|consen  435 LDALCS-RLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRA  512 (727)
T ss_pred             HHHHHH-HhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCCCceeeh
Confidence            999999 556669999999999999999999999999999887653   789999999999 7877776 788999988

>KOG0500|consensus

Probab=99.04  E-value=9.9e-10  Score=118.67  Aligned_cols=140  Identities=22%  Similarity=0.256  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHH
Q psy11552        244 YILRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELA  323 (714)
Q Consensus       244 ~ilr~~~k~l~~r~l~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~  323 (714)
                      |..|+..+.++.|.+++....+.+....+.        .+..-..|+.-+..-.+.-..+.|+++++|....+.-+.+|.
T Consensus       256 M~~RkV~~~lq~rVikwfdYlwa~~~~~DE--------eevl~~LP~kL~aeIA~nvh~dTLkkV~iF~~ce~~lL~elV  327 (536)
T KOG0500|consen  256 MRYRKVPKALQTRVIKWFDYLWAHKKIVDE--------EEVLKLLPDKLKAEIAINVHLDTLKKVRIFQDCEAGLLVELV  327 (536)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHhccccccH--------HHHHHhCCHHHHhHhHHHHHHHHHHhhhHHHhcchhHHHHHH
Confidence            667778888888888777777766554422        222223455666666777888999999999999999999998


Q ss_pred             hhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce-EEEEecCCCccchhhhc------cCCCcceeeec
Q psy11552        324 GVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG-CVTSLYAGEDFGKLALV------NNAPRLIITSM  392 (714)
Q Consensus       324 ~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~-~v~~l~~Gd~FGElaLl------~~~pr~atv~A  392 (714)
                      - .+....|.||+.|+++||.|..||||.+|.+.|...+++ ...+|.+|++|||++++      ++..|+|+|++
T Consensus       328 L-klk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGEisIlni~g~~~gNRRtanvrS  402 (536)
T KOG0500|consen  328 L-KLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFGEISILNIKGNKNGNRRTANVRS  402 (536)
T ss_pred             H-HhcceeeCCCCeEEecCcccceEEEEEccEEEEEecCCcEEEEEecCCceeeeeEEEEEcCcccCCcceeeeee
Confidence            8 567778999999999999999999999999999887664 78899999999999987      35567777765

>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins

Probab=99.04  E-value=2.2e-10  Score=97.76  Aligned_cols=63  Identities=22%  Similarity=0.299  Sum_probs=51.0

Q ss_pred             HHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhccccccc
Q psy11552         49 RTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        49 ~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv  115 (714)
                      ...|.+.. +...++.+...  ++|++||+|++.||||+++..  +.+|+||++||+.|++.|.+..|
T Consensus         6 v~sMqDp~~GIk~~~~~~~~--tv~~hcftGsdVVdWLv~~~~--v~~r~EAl~las~Ll~eGyL~P~   69 (99)
T cd04445           6 YLSMKDPEKGIKELNLEKDK--KVFNHCFTGSCVIDWLVSNQS--VRNRQEGLMLASSLLNEGYLQPA   69 (99)
T ss_pred             HHHHhCcccchhhhhHHHhh--ccccceecccHHHHHHHHhhc--ccchHHHHHHHHHHHHcCCeeec
Confidence            33444444 33333444444  999999999999999999998  89999999999999999999998

Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=98.98  E-value=2.2e-09  Score=110.55  Aligned_cols=90  Identities=18%  Similarity=0.266  Sum_probs=80.3

Q ss_pred             HHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EEEEecCCCccchh
Q psy11552        302 YEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKL  378 (714)
Q Consensus       302 ~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v~~l~~Gd~FGEl  378 (714)
                      .+.|..+++|+.|+++++..|+. ....++|++|++|+++|++++.+|+|++|.|.++....+   .+..+++|++||+.
T Consensus         6 ~~~l~~~~~f~~L~~~~~~~l~~-~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~   84 (236)
T PRK09392          6 LIRLRNLPLFADMADATFERLMR-GAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILA   84 (236)
T ss_pred             HHHHhcCccccCCCHHHHHHHHh-hcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhH
Confidence            45778899999999999999999 556779999999999999999999999999999875433   78889999999999


Q ss_pred             hhccCCCcceeeec
Q psy11552        379 ALVNNAPRLIITSM  392 (714)
Q Consensus       379 aLl~~~pr~atv~A  392 (714)
                      +++.+.|+.++++|
T Consensus        85 ~~~~~~~~~~~~~A   98 (236)
T PRK09392         85 AVVLDAPYLMSART   98 (236)
T ss_pred             HHhCCCCCceEEEE
Confidence            99999998887766

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=98.95  E-value=5e-09  Score=126.95  Aligned_cols=90  Identities=17%  Similarity=0.193  Sum_probs=81.4

Q ss_pred             HHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EEEEecCCCccchh
Q psy11552        302 YEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKL  378 (714)
Q Consensus       302 ~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v~~l~~Gd~FGEl  378 (714)
                      .+.+.++++|++++++.+.+|+. .+...+|++|+.|+.|||.++.+|||.+|.|++.....+   .+..+++|++|||+
T Consensus       373 ~~~l~~~~lF~~~s~~~l~~L~~-~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~  451 (823)
T PLN03192        373 LPVVEKVYLFKGVSREILLLLVT-KMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEV  451 (823)
T ss_pred             HHHHhhCcchhcCCHHHHHHHHH-hhheeeeCCCCEEEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecch
Confidence            34677899999999999999999 667779999999999999999999999999999874432   68899999999999


Q ss_pred             hhccCCCcceeeec
Q psy11552        379 ALVNNAPRLIITSM  392 (714)
Q Consensus       379 aLl~~~pr~atv~A  392 (714)
                      +++.+.|+++|++|
T Consensus       452 ~~l~~~p~~~t~ra  465 (823)
T PLN03192        452 GALCCRPQSFTFRT  465 (823)
T ss_pred             HHhcCCCCCCeEEE
Confidence            99999999999988

>KOG1113|consensus

Probab=98.94  E-value=4.8e-10  Score=116.91  Aligned_cols=92  Identities=32%  Similarity=0.434  Sum_probs=82.9

Q ss_pred             HHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhh
Q psy11552        300 QIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLA  379 (714)
Q Consensus       300 ~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGEla  379 (714)
                      -..+.|.++|++++|...++..+++. .....|++|+.|+.||++|+.||+|.+|+|+|....++++..++.||+|||+|
T Consensus       237 My~~~l~s~pil~~l~k~er~kv~da-l~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~~~v~vkl~~~dyfge~a  315 (368)
T KOG1113|consen  237 MYEPFLESVPILESLEKLERAKVADA-LGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKRDGVEVKLKKGDYFGELA  315 (368)
T ss_pred             hhhhhhhcchhhHHHHHHHHHhhhcc-cceeeccCCceEEeccCCcceEEEecccccchhhccCCeEEEechhhhcchHH
Confidence            34557778999999999999999995 45559999999999999999999999999999887766545999999999999


Q ss_pred             hccCCCcceeeec
Q psy11552        380 LVNNAPRLIITSM  392 (714)
Q Consensus       380 Ll~~~pr~atv~A  392 (714)
                      |+.+.||.|||.|
T Consensus       316 l~~~~pr~Atv~a  328 (368)
T KOG1113|consen  316 LLKNLPRAATVVA  328 (368)
T ss_pred             HHhhchhhceeec
Confidence            9999999999998

>PLN02868 acyl-CoA thioesterase family protein

Probab=98.81  E-value=2.1e-08  Score=112.03  Aligned_cols=91  Identities=22%  Similarity=0.231  Sum_probs=80.2

Q ss_pred             HHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc---eEEEEecCCCcc
Q psy11552        299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK---GCVTSLYAGEDF  375 (714)
Q Consensus       299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~---~~v~~l~~Gd~F  375 (714)
                      +.+.+.|.++++|++|+++++.+|+. .+...+|++|++||++||+.+.+|+|++|.|+|+....   ..+..+++|++|
T Consensus         4 ~~~~~~L~~~~~F~~L~~~~l~~l~~-~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~f   82 (413)
T PLN02868          4 ESVVEFLGSVPLLQRLPSSSLKKIAE-VVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYF   82 (413)
T ss_pred             HHHHHHHhcCcccccCCHHHHHHHHH-hceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEe
Confidence            45667788999999999999999999 56777999999999999999999999999999988542   267889999999


Q ss_pred             chhhhccCCCcceeeec
Q psy11552        376 GKLALVNNAPRLIITSM  392 (714)
Q Consensus       376 GElaLl~~~pr~atv~A  392 (714)
                      |+.  +.+.++.++++|
T Consensus        83 G~~--l~~~~~~~~~~A   97 (413)
T PLN02868         83 GYG--LSGSVHSADVVA   97 (413)
T ss_pred             ehh--hCCCCcccEEEE
Confidence            985  678889999887

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=98.80  E-value=3.4e-08  Score=88.41  Aligned_cols=82  Identities=30%  Similarity=0.419  Sum_probs=68.3

Q ss_pred             cCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc----eEEEEecCCCccchhhhcc--C
Q psy11552        310 PLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK----GCVTSLYAGEDFGKLALVN--N  383 (714)
Q Consensus       310 ~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~----~~v~~l~~Gd~FGElaLl~--~  383 (714)
                      +|.++++..+..++. ......+++|++|+++|++.+++|+|.+|.+.++....    ..+..+++|+.||+.+++.  .
T Consensus         1 ~f~~l~~~~~~~l~~-~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~   79 (120)
T smart00100        1 LFKNLDAEELRELAD-ALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSR   79 (120)
T ss_pred             CcCCCCHHHHHHHHH-hceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCC
Confidence            589999999999999 55667899999999999999999999999999987632    1788899999999999983  3


Q ss_pred             CCcceeeec
Q psy11552        384 APRLIITSM  392 (714)
Q Consensus       384 ~pr~atv~A  392 (714)
                      .+...++.|
T Consensus        80 ~~~~~~~~~   88 (120)
T smart00100       80 RAASATAVA   88 (120)
T ss_pred             cccceEEEE
Confidence            344444443

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=98.73  E-value=6.1e-08  Score=86.27  Aligned_cols=82  Identities=34%  Similarity=0.487  Sum_probs=73.2

Q ss_pred             cCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc----eEEEEecCCCccchhhhccCCC
Q psy11552        310 PLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK----GCVTSLYAGEDFGKLALVNNAP  385 (714)
Q Consensus       310 ~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~----~~v~~l~~Gd~FGElaLl~~~p  385 (714)
                      +|+.|+++.+..|+. ......+++|++|+.+|++.+.+|+|.+|.+.++....    ..+..+.+|++||+.+++.+.+
T Consensus         1 ~f~~l~~~~~~~l~~-~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~   79 (115)
T cd00038           1 LFSGLDDEELEELAD-ALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGP   79 (115)
T ss_pred             CcccCCHHHHHHHHh-hceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCC
Confidence            589999999999999 46666899999999999999999999999999988653    2788899999999999998888


Q ss_pred             cceeeec
Q psy11552        386 RLIITSM  392 (714)
Q Consensus       386 r~atv~A  392 (714)
                      +..+++|
T Consensus        80 ~~~~~~a   86 (115)
T cd00038          80 RSATVRA   86 (115)
T ss_pred             CCceEEE
Confidence            8888877

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=98.68  E-value=8.2e-08  Score=96.11  Aligned_cols=86  Identities=31%  Similarity=0.410  Sum_probs=74.6

Q ss_pred             hCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhc
Q psy11552        306 LHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALV  381 (714)
Q Consensus       306 ~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl  381 (714)
                      ...+.|..++......++. ......+++|++||.+||+++.+|+|.+|.|.++.... |   .+..++||++||+.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~   81 (214)
T COG0664           3 KENPLLNLLPSELLELLAL-KLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALL   81 (214)
T ss_pred             ccccccccCCHHHHHHHhh-hceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHh
Confidence            3456777788888888874 66777999999999999999999999999999998654 2   77889999999999999


Q ss_pred             cCCCcceeeec
Q psy11552        382 NNAPRLIITSM  392 (714)
Q Consensus       382 ~~~pr~atv~A  392 (714)
                      .+.||+++++|
T Consensus        82 ~~~~~~~~~~a   92 (214)
T COG0664          82 GGDPRSASAVA   92 (214)
T ss_pred             cCCCccceEEE
Confidence            99899999887

>KOG0499|consensus

Probab=98.62  E-value=3.4e-08  Score=108.41  Aligned_cols=94  Identities=22%  Similarity=0.342  Sum_probs=81.2

Q ss_pred             HHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce--EEEEecCCCcc
Q psy11552        298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG--CVTSLYAGEDF  375 (714)
Q Consensus       298 ~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~--~v~~l~~Gd~F  375 (714)
                      +.--+..|+++.+|++.+...+++++- -...+.|-+|+.|++.||.|..||||..|.|.|.-..++  ++.+|.+|.+|
T Consensus       522 i~V~y~~lSKVqLFq~Cdr~mirDmll-rLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVF  600 (815)
T KOG0499|consen  522 IDVNYSILSKVQLFQGCDRQMIRDMLL-RLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVF  600 (815)
T ss_pred             EEeehhhhhHHHHhhhhHHHHHHHHHH-HhhceeecCCceeeecccccceeEEeecceEEEecCCCCCEEEEEeccccee
Confidence            334567788899999999999999988 456667889999999999999999999999999875444  88999999999


Q ss_pred             chhhhc---cCCCcceeeec
Q psy11552        376 GKLALV---NNAPRLIITSM  392 (714)
Q Consensus       376 GElaLl---~~~pr~atv~A  392 (714)
                      ||++|+   .+..|+|+|+|
T Consensus       601 GEISLLaigG~nRRTAnV~a  620 (815)
T KOG0499|consen  601 GEISLLAIGGGNRRTANVVA  620 (815)
T ss_pred             eeeeeeeecCCCccchhhhh
Confidence            999987   45678999987

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=98.62  E-value=1.5e-07  Score=94.89  Aligned_cols=80  Identities=21%  Similarity=0.324  Sum_probs=68.2

Q ss_pred             CCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCC-Cc
Q psy11552        312 HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNA-PR  386 (714)
Q Consensus       312 ~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~-pr  386 (714)
                      +.++++++..+++ .+...+|++|++|+.+|++.+.+|+|++|.|+++.... |   .+..+++|++||+.+++.+. ++
T Consensus         6 ~~~~~~~~~~l~~-~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~   84 (211)
T PRK11753          6 KPQTDPTLEWFLS-HCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQER   84 (211)
T ss_pred             CCCCHHHHHHHHh-hCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCc
Confidence            6789999999999 66777999999999999999999999999999987532 2   67889999999999998764 45


Q ss_pred             ceeeec
Q psy11552        387 LIITSM  392 (714)
Q Consensus       387 ~atv~A  392 (714)
                      +++++|
T Consensus        85 ~~~~~a   90 (211)
T PRK11753         85 SAWVRA   90 (211)
T ss_pred             eEEEEE
Confidence            556654

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=98.60  E-value=7.8e-08  Score=82.67  Aligned_cols=63  Identities=29%  Similarity=0.502  Sum_probs=58.1

Q ss_pred             EeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce----EEEEecCCCccchhhhccCCCcceeeec
Q psy11552        330 AHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       330 ~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~----~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      ++|++|++|+++|++++++|+|++|.+.+.....+    .+..+++|++||+.+++.+.|+.++++|
T Consensus         2 ~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a   68 (91)
T PF00027_consen    2 KTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIA   68 (91)
T ss_dssp             EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEE
T ss_pred             eEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEE
Confidence            57999999999999999999999999999886543    5789999999999999999999999988

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.51  E-value=2e-07  Score=102.94  Aligned_cols=92  Identities=25%  Similarity=0.302  Sum_probs=81.8

Q ss_pred             HHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhh
Q psy11552        300 QIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLA  379 (714)
Q Consensus       300 ~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGEla  379 (714)
                      .+.+++.++|+|+.|+++++..|... +...+|.+|++|+.-|.+..++|+|.+|.|+|...+...+..+..||.||-.+
T Consensus         4 ~~~~Fl~~~pPF~~L~~eel~~L~~~-l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~~~   82 (610)
T COG2905           4 EPDQFLQQHPPFSQLPAEELEQLMGA-LEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGFSS   82 (610)
T ss_pred             CHHHHHhcCCCcccCCHHHHHHHHhh-hccccccCCCeeecCCCCcceeEEEEeceeeEEcCCCeeeeeeccCccccchh
Confidence            45679999999999999999999995 45559999999999999999999999999999888776899999999999999


Q ss_pred             hccCCCcceeeec
Q psy11552        380 LVNNAPRLIITSM  392 (714)
Q Consensus       380 Ll~~~pr~atv~A  392 (714)
                      |+.+.+....++|
T Consensus        83 l~~~~~~~~~~~a   95 (610)
T COG2905          83 LFTELNKQRYMAA   95 (610)
T ss_pred             hcccCCCcceeEe
Confidence            9988766555554

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=98.37  E-value=1.1e-06  Score=90.25  Aligned_cols=78  Identities=26%  Similarity=0.295  Sum_probs=63.1

Q ss_pred             HhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhh
Q psy11552        305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLAL  380 (714)
Q Consensus       305 L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaL  380 (714)
                      +.+..+|..|+++++..|.........|++|++|+++||+.+++|+|.+|.|.++..+. |   .+..+.||++||+.++
T Consensus        15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~   94 (235)
T PRK11161         15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI   94 (235)
T ss_pred             ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence            44545555799999999998433345799999999999999999999999999998643 2   6777899999998766


Q ss_pred             cc
Q psy11552        381 VN  382 (714)
Q Consensus       381 l~  382 (714)
                      ..
T Consensus        95 ~~   96 (235)
T PRK11161         95 GS   96 (235)
T ss_pred             cC
Confidence            43

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=98.37  E-value=5.2e-07  Score=92.48  Aligned_cols=71  Identities=11%  Similarity=0.137  Sum_probs=60.3

Q ss_pred             HHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCCCcceeeec
Q psy11552        321 ELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       321 ~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      +|++ ....+.|++|++|+.+||+.+.+|+|++|.|.++..+. |   .+..+.||++||+.+++.+.|+++++.|
T Consensus        26 ~i~~-~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A  100 (226)
T PRK10402         26 DVSA-DTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQA  100 (226)
T ss_pred             HHHh-hhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEE
Confidence            4555 34555899999999999999999999999999987532 2   6788999999999999999988888876

>KOG2968|consensus

Probab=98.29  E-value=9.4e-07  Score=101.44  Aligned_cols=111  Identities=28%  Similarity=0.461  Sum_probs=95.9

Q ss_pred             ecCCCEEEccCCcCCeEEEEEEeEEEEEEeC---------ce-EEEEecCCCccchhhhccCCCcceeeec---------
Q psy11552        332 PRKGEILFHQGDEGKSWYIIIQGSVDVVIYG---------KG-CVTSLYAGEDFGKLALVNNAPRLIITSM---------  392 (714)
Q Consensus       332 ~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~---------~~-~v~~l~~Gd~FGElaLl~~~pr~atv~A---------  392 (714)
                      -+..++|.+||+.+.+.|++.+|.+.++...         .+ .+..++||+++|-++++.|.|-..+++|         
T Consensus       391 ~keitiiv~q~a~~~gl~~ii~g~l~v~~sm~~~s~~~~~~~~~~f~v~pG~ivgyla~lt~e~S~~tirArsdt~v~~i  470 (1158)
T KOG2968|consen  391 EKEITIIVEQGARDVGLYYIIKGSLSVYQSMYDVSGNLVLAGMLLFVVGPGEIVGYLAILTNEPSFITIRARSDTRVLFI  470 (1158)
T ss_pred             ccceEEEEecccccceeeEEeecceeeeehhcccccccccccceEEEecCCceechhhhhcCCcceEEEEEecceEEEEe
Confidence            3566788999999999999999999886531         11 6788999999999999999999989887         


Q ss_pred             ------------------------------------------------ccccCCCCceEEEEEeCeEEEEee----ccee
Q psy11552        393 ------------------------------------------------VFHQGDEGKSWYIIIQGSVDVVIY----GKGC  420 (714)
Q Consensus       393 ------------------------------------------------i~~~g~~~~~~YiI~~G~~~~~~~----~~~~  420 (714)
                                                                      +++|||.+|..|+|++|.++.+..    .+..
T Consensus       471 srs~l~~~~~~~p~I~L~ia~svl~~lsp~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i  550 (1158)
T KOG2968|consen  471 SRSDLERFLDAEPLIYLRIAHSVLRRLSPFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEI  550 (1158)
T ss_pred             eHHHHHHHHHhCceEEEehhhHHHHhcCHHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchh
Confidence                                                            789999999999999999987764    2345


Q ss_pred             eeeecCCCccchhhhhcCCchh
Q psy11552        421 VTSLYAGEDFGKLALVNNAPSY  442 (714)
Q Consensus       421 v~~l~~gd~fge~~~L~~~p~~  442 (714)
                      +..++.||.+|+++.+.+.|+.
T Consensus       551 ~~EygrGd~iG~~E~lt~~~R~  572 (1158)
T KOG2968|consen  551 VGEYGRGDLIGEVEMLTKQPRA  572 (1158)
T ss_pred             hhhccCcceeehhHHhhcCCcc
Confidence            6799999999999999998776

>cd04440 DEP_2_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in P-Rex-like proteins

Probab=98.23  E-value=7.7e-07  Score=77.07  Aligned_cols=29  Identities=17%  Similarity=0.273  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHHhhccccccc---------ceeeEeecC
Q psy11552         96 RQITTGMWQALLEEGVIYHG---------KISCFFFSE  124 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv---------~~~y~f~~~  124 (714)
                      |++||.+||.|||.|+||||         ++||||+.|
T Consensus        56 R~eAv~~gq~Ll~~gii~HV~~~h~F~D~~lfYrF~~d   93 (93)
T cd04440          56 REEAVILGVGLCNNGFMHHVLEKSEFKDEPLLFRFYAD   93 (93)
T ss_pred             HHHHHHHHHHHHhCCCEEecCCCcCcCCcCeEEEEecC
Confidence            78999999999999999999         899999876

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.

>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins

Probab=98.23  E-value=1.6e-06  Score=73.09  Aligned_cols=59  Identities=27%  Similarity=0.462  Sum_probs=51.3

Q ss_pred             cccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCC-CccccCc-Cceeee
Q psy11552        143 TIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNG-EQAFRDK-CILYNF  203 (714)
Q Consensus       143 ~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~-~~~F~d~-~~~Yrf  203 (714)
                      .+|.+|++|+|+|+||.++-.  +.++..|...||.|++.|+|.+|.+ -..|.++ ..+|++
T Consensus        24 Gty~nt~sG~~Iv~~L~~n~~--~~s~~~aE~fGQdLv~~gfir~~g~vG~~F~nSs~~~Yqw   84 (84)
T cd04436          24 GTYQNTSSGSEIVSWLQENMP--EKDLDAAEAFGQDLLNQGFLRLVGGVGSTFVNSSKFQYQW   84 (84)
T ss_pred             ccccCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCchHHHhcccCcceecCccceecC
Confidence            367999999999999999988  7999999999999999999999975 4578777 566653

Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=98.22  E-value=3.4e-06  Score=84.49  Aligned_cols=64  Identities=23%  Similarity=0.320  Sum_probs=53.5

Q ss_pred             eEEeecCCCEEEccCC--cCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCCCcceeeec
Q psy11552        328 FEAHPRKGEILFHQGD--EGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       328 ~~~~~~~G~iI~~qGd--~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      ....|++|++||++||  +.+.+|+|++|.|.++.... |   .+..++|||+||+.++. +.++++++.|
T Consensus         7 ~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A   76 (202)
T PRK13918          7 DTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEA   76 (202)
T ss_pred             ceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEE
Confidence            4557999999999999  67999999999999988543 2   78888999999997665 5677777766

>KOG3572|consensus

Probab=98.10  E-value=3.5e-06  Score=99.43  Aligned_cols=76  Identities=20%  Similarity=0.210  Sum_probs=68.0

Q ss_pred             CccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCchhhhHHHHh
Q psy11552         58 GTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIPMERIYYSL  137 (714)
Q Consensus        58 ~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~~~~~~~~~~  137 (714)
                      ..+.++.+|-  +.|..||+|+|.|.||+.+...                                              
T Consensus      1286 ~klq~~~wh~--~~~e~CF~gsE~VnWL~n~f~g---------------------------------------------- 1317 (1701)
T KOG3572|consen 1286 IKLQYQGWHP--DPNELCFRGSEWVNWLQNYFAG---------------------------------------------- 1317 (1701)
T ss_pred             CceeeecccC--CcchhhhhhHHHHHHHHHhhhh----------------------------------------------
Confidence            5677899999  8899999999999999888774                                              


Q ss_pred             hcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHH--HHhcCcceecCCCccccCcCceeeeccCccC
Q psy11552        138 YSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQA--LLEEGVIYHVNGEQAFRDKCILYNFWQDKEG  209 (714)
Q Consensus       138 ~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~--Ll~~g~i~hv~~~~~F~d~~~~Yrf~~d~~~  209 (714)
                                                  ..+|++|+.+||.  ++..|+.+|+...|.|.|+..||++..|+..
T Consensus      1318 ----------------------------I~Tre~AikygqK~~e~qlglf~hal~kh~fldG~YfY~ivpeys~ 1363 (1701)
T KOG3572|consen 1318 ----------------------------IETREKAIKYGQKTNEKQLGLFHHALMKHVFLDGLYFYYIVPEYSK 1363 (1701)
T ss_pred             ----------------------------hhhHHHHHHHHhhhhHHHhhhhhhhhhcceeccceEEEEecccccc
Confidence                                        5899999999999  8899999999999999999999999998754

>cd04436 DEP_fRgd2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGAP (GTPase-activator protein) Rgd2-like proteins

Probab=97.92  E-value=1.9e-05  Score=66.70  Aligned_cols=49  Identities=24%  Similarity=0.320  Sum_probs=44.7

Q ss_pred             ccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhccccccc
Q psy11552         63 RKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        63 r~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv  115 (714)
                      |..-+  -||.+||.|+|.|+||.++-.  +.+++.|-.+||.|++.|+|.+|
T Consensus        19 kvPil--Gty~nt~sG~~Iv~~L~~n~~--~~s~~~aE~fGQdLv~~gfir~~   67 (84)
T cd04436          19 KVPIL--GTYQNTSSGSEIVSWLQENMP--EKDLDAAEAFGQDLLNQGFLRLV   67 (84)
T ss_pred             eeccc--ccccCcccHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCchHHHh
Confidence            33445  699999999999999999999  59999999999999999999987

Rgd2-like proteins share a common domain architecture, containing, beside the RhoGAP domain, a DEP and a FCH (Fes/CIP4 homology) domain. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5.

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=97.86  E-value=2.3e-05  Score=77.83  Aligned_cols=51  Identities=27%  Similarity=0.489  Sum_probs=45.0

Q ss_pred             CCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCCC
Q psy11552        335 GEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNAP  385 (714)
Q Consensus       335 G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~p  385 (714)
                      |++||++||+.+++|+|++|.|+++.... |   .+..++||++||+.+++.+.+
T Consensus         1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~   55 (193)
T TIGR03697         1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHR   55 (193)
T ss_pred             CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCC
Confidence            78999999999999999999999988533 2   578899999999999987764

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>KOG3571|consensus

Probab=97.86  E-value=1.6e-05  Score=86.44  Aligned_cols=56  Identities=29%  Similarity=0.346  Sum_probs=52.9

Q ss_pred             CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhccccccc
Q psy11552         57 SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        57 ~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv  115 (714)
                      +--||||.|.-  -+.++.|+|+|+||||++|-+. ..+|.+|-.++..||..|+|.|+
T Consensus       406 GLeirdRmWlK--ItIPnafiGsDlVdWL~~hVeg-~~~RkeAR~yAs~lLk~g~IrHt  461 (626)
T KOG3571|consen  406 GLEIRDRMWLK--ITIPNAFIGSDLVDWLVDHVEG-LHERKEARKYASRLLKAGYIRHT  461 (626)
T ss_pred             cceeccceeee--eecchhhcchhHHHHHHHHhhh-hhhHHHHHHHHHHHHHhCchhhc
Confidence            66799999976  7999999999999999999996 99999999999999999999998

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=97.79  E-value=5.9e-05  Score=77.53  Aligned_cols=64  Identities=20%  Similarity=0.258  Sum_probs=50.8

Q ss_pred             cceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCCCcceeeec
Q psy11552        326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       326 ~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      .....+|++|++||.+||+++++|+|++|.|+++.... |   .+..+.+|++||+.   .+.++..++.|
T Consensus        37 ~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A  104 (230)
T PRK09391         37 VASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEA  104 (230)
T ss_pred             eeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEE
Confidence            45677899999999999999999999999999987432 2   67778999999964   34455555544

>KOG3542|consensus

Probab=97.78  E-value=8.1e-05  Score=83.13  Aligned_cols=74  Identities=34%  Similarity=0.552  Sum_probs=66.3

Q ss_pred             HhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEE
Q psy11552        285 RQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVV  359 (714)
Q Consensus       285 ~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~  359 (714)
                      .+.+||.-++++++...+..|.+...|++|-...++.|++...++ +++...++|+.|+.+.+|||+++|+|-|.
T Consensus        19 ~~~k~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~arye-r~~g~~ilf~~~~var~wyillsgsv~v~   92 (1283)
T KOG3542|consen   19 SLIKPPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYE-RHPGQYILFRDGDVARSWYILLSGSVFVE   92 (1283)
T ss_pred             hccCCcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhh-cCCCceEEecccchhhheeeeeccceEee
Confidence            345889999999999999999999999999999999999955555 77788899999999999999999999874

>cd04437 DEP_Epac DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in Epac-like proteins

Probab=97.76  E-value=2e-05  Score=72.45  Aligned_cols=35  Identities=37%  Similarity=0.504  Sum_probs=31.3

Q ss_pred             hhHHHHHHHHHhhccccccc---------ceeeEeecCCCCchh
Q psy11552         96 RQITTGMWQALLEEGVIYHG---------KISCFFFSETETIPM  130 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv---------~~~y~f~~~~~~~~~  130 (714)
                      |++|+.+||.|||.|+|+||         ..||||+.|+.+...
T Consensus        50 R~eAv~lgq~Ll~~gvi~HV~~~h~F~D~~~fYrF~~d~~~~~~   93 (125)
T cd04437          50 RSQAVGMWQVLLEEGVLLHVDQELHFQDKYQFYRFSDDECSPAP   93 (125)
T ss_pred             HHHHHHHHHHHHhCCCeEEeCCcCccccCCeeEEECCccCCccc
Confidence            78999999999999999999         789999998776644

Epac (exchange proteins directly activated by cAMP) proteins are GEFs (guanine-nucleotide-exchange factors) for the small GTPases, Rap1 and Rap2. They are directly regulated by cyclic AMP, a second messenger that plays a role in the control of diverse cellular processes, such as cell adhesion and insulin secretion. Epac-like proteins share a common domain architecture, containing RasGEF, DEP and CAP-effector (cAMP binding) domains. The DEP domain is involved in membrane localization.

>cd04441 DEP_2_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 2 found in DEP6-like proteins

Probab=97.72  E-value=1.9e-05  Score=67.52  Aligned_cols=26  Identities=31%  Similarity=0.487  Sum_probs=24.1

Q ss_pred             hhHHHHHHHHHhhccccccc---------ceeeEe
Q psy11552         96 RQITTGMWQALLEEGVIYHG---------KISCFF  121 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv---------~~~y~f  121 (714)
                      |++|+.+||.|||.|+|+||         .+||||
T Consensus        51 R~eAv~lgq~Ll~~gii~HV~~~h~F~D~~~fYrF   85 (85)
T cd04441          51 RREAVQLCRRLLEHGIIQHVSNKHHFFDSNLLYQF   85 (85)
T ss_pred             HHHHHHHHHHHHHCCCEEecCCCCCccCCCeeeeC
Confidence            78999999999999999999         777876

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.

>KOG3571|consensus

Probab=97.65  E-value=2.9e-05  Score=84.48  Aligned_cols=64  Identities=28%  Similarity=0.432  Sum_probs=55.4

Q ss_pred             cccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeeeccCccC
Q psy11552        143 TIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEG  209 (714)
Q Consensus       143 ~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf~~d~~~  209 (714)
                      .++++.|+|+++||||+++-+.+ .+|.+|-.++-.||..|+|.|+-++..|-.. .+|-| .|+|.
T Consensus       417 ItIPnafiGsDlVdWL~~hVeg~-~~RkeAR~yAs~lLk~g~IrHtVnK~TFtEq-CYYVf-GD~c~  480 (626)
T KOG3571|consen  417 ITIPNAFIGSDLVDWLVDHVEGL-HERKEARKYASRLLKAGYIRHTVNKLTFTEQ-CYYVF-GDECS  480 (626)
T ss_pred             eecchhhcchhHHHHHHHHhhhh-hhHHHHHHHHHHHHHhCchhhcccceeeeee-eEEEe-ccccc
Confidence            34699999999999999998877 9999999999999999999999999999754 45667 35544

>cd04443 DEP_GPR155 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in GPR155-like proteins

Probab=97.64  E-value=3e-05  Score=66.26  Aligned_cols=26  Identities=27%  Similarity=0.260  Sum_probs=23.5

Q ss_pred             hhHHHHHHHHHhhccccccc---------ceeeEe
Q psy11552         96 RQITTGMWQALLEEGVIYHG---------KISCFF  121 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv---------~~~y~f  121 (714)
                      |++|+.+||.||+.|+|+||         .+||||
T Consensus        49 R~eAv~lg~~Ll~~G~i~HV~~~~~F~D~~~~YrF   83 (83)
T cd04443          49 RGEAVLYGRRLLQGGVLQHITNEHHFRDENLLYRF   83 (83)
T ss_pred             HHHHHHHHHHHHHCCCEEecCCCcCEecCCeeEeC
Confidence            67999999999999999999         677776

GRP155-like proteins, also known as PGR22, contain an N-terminal permease domain, a central transmembrane region and a C-terminal DEP domain. They are orphan receptors of the class B G protein-coupled receptors. Their function is unknown.

>cd04442 DEP_1_DEP6 DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in DEP6-like proteins

Probab=97.63  E-value=3.1e-05  Score=65.94  Aligned_cols=20  Identities=30%  Similarity=0.461  Sum_probs=19.5

Q ss_pred             hhHHHHHHHHHhhccccccc
Q psy11552         96 RQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv  115 (714)
                      |++|+.+||+||+.|+|+||
T Consensus        47 R~eAv~lgq~Ll~~gvi~HV   66 (82)
T cd04442          47 RETAIKIMQKLLDHSIIHHV   66 (82)
T ss_pred             HHHHHHHHHHHHHCCCEEec
Confidence            78999999999999999999

DEP6 proteins contain two DEP and a PDZ domain. Their function is unknown.

>cd04439 DEP_1_P-Rex DEP (Dishevelled, Egl-10, and Pleckstrin) domain 1 found in P-Rex-like proteins

Probab=97.58  E-value=4.1e-05  Score=65.15  Aligned_cols=26  Identities=35%  Similarity=0.434  Sum_probs=22.8

Q ss_pred             hhHHHHHHHHHhhccccccc---------ceeeEe
Q psy11552         96 RQITTGMWQALLEEGVIYHG---------KISCFF  121 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv---------~~~y~f  121 (714)
                      |++|+.+||.||+.|+|+||         .+||||
T Consensus        47 r~eAv~lg~~Ll~~G~i~HV~~~h~FkD~~~fYrF   81 (81)
T cd04439          47 PEEGVNLGQALLENGIIHHVSDKHQFKNEQVLYRF   81 (81)
T ss_pred             HHHHHHHHHHHHHCCCEEecCCCCCEecCCeEEeC
Confidence            57999999999999999999         566665

The P-Rex family is the guanine-nucleotide exchange factor (GEF) for the small GTPase Rac that contains an N-terminal RhoGEF domain, two DEP and PDZ domains. Rac-GEF activity is stimulated by phosphatidylinositol (3,4,5)-trisphosphate (PtdIns(3,4,5)P3), a lipid second messenger, and by the G beta-gamma subunits of heterotrimeric G proteins. The DEP domains are not involved in mediating these stimuli, but may be of importance for basal and stimulated levels Rac-GEF activity.

>KOG0501|consensus

Probab=97.42  E-value=0.00017  Score=79.72  Aligned_cols=88  Identities=20%  Similarity=0.291  Sum_probs=71.9

Q ss_pred             HHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhhhcc
Q psy11552        303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVN  382 (714)
Q Consensus       303 ~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGElaLl~  382 (714)
                      +....+|.|.--++.-++.|+-..+ ..+..||+.|++-|+.-++++||++|+.+|...++ +|+.||.||+||..---.
T Consensus       548 KVFnEHpaFRLASDGCLRaLAm~f~-~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDDE-VVAILGKGDVFGD~FWK~  625 (971)
T KOG0501|consen  548 KVFNEHPAFRLASDGCLRALAMEFQ-TNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDDE-VVAILGKGDVFGDEFWKE  625 (971)
T ss_pred             hhhccCcceeeccchhHHHHHHHHH-hccCCCcceeeecCCccceEEEEEecceEEeecCc-EEEEeecCccchhHHhhh
Confidence            3455699999999999999988444 44899999999999999999999999999988777 899999999999864432


Q ss_pred             CC--Ccceeeec
Q psy11552        383 NA--PRLIITSM  392 (714)
Q Consensus       383 ~~--pr~atv~A  392 (714)
                      +.  ...|.|+|
T Consensus       626 ~t~~qs~ANVRA  637 (971)
T KOG0501|consen  626 NTLGQSAANVRA  637 (971)
T ss_pred             hhhhhhhhhhhh
Confidence            22  23456665

>KOG2968|consensus

Probab=97.22  E-value=0.00014  Score=84.19  Aligned_cols=66  Identities=24%  Similarity=0.418  Sum_probs=58.7

Q ss_pred             ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC----ceEEEEecCCCccchhhhccCCCcceeeec
Q psy11552        327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       327 ~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~----~~~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      ....++.+|+.+++|||..++.|+|+.|.+.-....    ...+..++.||.+|++.++.+.||..|+.|
T Consensus       508 ldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~A  577 (1158)
T KOG2968|consen  508 LDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMA  577 (1158)
T ss_pred             cceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEE
Confidence            455589999999999999999999999999876652    227889999999999999999999999998

>cd04435 DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) Rom2-like proteins

Probab=97.17  E-value=0.00036  Score=57.89  Aligned_cols=70  Identities=16%  Similarity=0.191  Sum_probs=61.6

Q ss_pred             hHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCc-Cceeee
Q psy11552        132 RIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDK-CILYNF  203 (714)
Q Consensus       132 ~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~-~~~Yrf  203 (714)
                      +|....+.++.-.|++.|+|+|+||-+..--.  ..+|.=|.-+|+.|-.+.++|-|+-+|.++|+ .-.|+|
T Consensus        12 ~I~~~~~~K~gl~Y~~aFtG~~aV~~i~~ii~--t~DRnlALllgRsLdaQkfFhdV~y~hrLrDs~~evY~F   82 (82)
T cd04435          12 KIPLGDHTKDGITYRNSFTGKDAVTTIQGIIR--TSDRNLALLLGRSLDAQKFFHDVTYDHRLRDSVDEVYRF   82 (82)
T ss_pred             hccccccccCCeecCcccCcHHHHHHHHHHHh--cccHHHHHHHHHHHHHhHhhhhcccCCccccChhhhhcC
Confidence            44445677888899999999999999999887  68999999999999999999999988999998 567766

Rom2-like proteins share a common domain architecture, containing, beside the RhoGEF domain, a DEP, a PH (pleckstrin homology) and a CNH domain. Rom2, a yeast GEF for Rho1 and Rho2, is involved in mediating stress response via the Ras-cAMP pathway and also plays a role in mediating resistance to sphingolipid disturbances.

>cd04446 DEP_DEPDC4 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC4-like proteins

Probab=97.14  E-value=0.00016  Score=63.19  Aligned_cols=28  Identities=21%  Similarity=0.159  Sum_probs=23.3

Q ss_pred             HhhcCCCcccccccchhhHHHHHHhhCC
Q psy11552        136 SLYSGGRTIARRCASGSELVDWLMSLAP  163 (714)
Q Consensus       136 ~~~~~~~~~~~~cf~G~e~vdwl~~~~~  163 (714)
                      +.+....++|++||+|+|+||||+++..
T Consensus        15 kdRr~~lk~y~~CF~GsEaVDwL~~~l~   42 (95)
T cd04446          15 KKRRHNLKSYHDCFLGSEAVDVVLAHLM   42 (95)
T ss_pred             cceeeeceecccccchHHHHHHHHHHHh
Confidence            3445557899999999999999999874

DEPDC4 is a DEP domain containing protein of unknown function.

>cd04444 DEP_PLEK2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 2-like proteins

Probab=97.02  E-value=0.00032  Score=62.46  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=19.9

Q ss_pred             hcCCCcccccccchhhHHHHHHh
Q psy11552        138 YSGGRTIARRCASGSELVDWLMS  160 (714)
Q Consensus       138 ~~~~~~~~~~cf~G~e~vdwl~~  160 (714)
                      +....++|++||+|+|+||||++
T Consensus        21 ~r~~~k~y~~CF~Gse~VDWLv~   43 (109)
T cd04444          21 NMEQGSTYKKTFLGSALVDWLIS   43 (109)
T ss_pred             hhhccccccccccchHHHHHHHH
Confidence            34467899999999999999986

Pleckstrin 2 is found in a wide variety of cell types, which suggest a more general role in signaling than pleckstrin 1. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.

>cd04448 DEP_PIKfyve DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) PIKfyve-like proteins

Probab=96.97  E-value=0.0004  Score=59.20  Aligned_cols=20  Identities=35%  Similarity=0.282  Sum_probs=19.3

Q ss_pred             hhHHHHHHHHHhhccccccc
Q psy11552         96 RQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv  115 (714)
                      |++|+.+||.||+.|+|+||
T Consensus        47 R~eAv~~gq~Ll~~g~i~hV   66 (81)
T cd04448          47 RVQAIAIGQALLDAGWIECV   66 (81)
T ss_pred             HHHHHHHHHHHHHCCCEEec
Confidence            68999999999999999999

PIKfyve contains N-terminal Fyve finger and DEP domains, a central chaperonin-like domain and a C-terminal PIPK (phosphatidylinositol phosphate kinase) domain. PIKfyve-like proteins are important phosphatidylinositol (3)-monophosphate (PtdIns(3)P)-5-kinases, producing PtdIns(3,5)P2, which plays a major role in multivesicular body (MVB) sorting and control of retrograde traffic from the vacuole back to the endosome and/or Golgi. PIKfyve itself has been shown to be play a role in regulating early-endosome-to-trans-Golgi network (TGN) retrograde trafficking.

>cd04447 DEP_BRCC3 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in BBRC3-like proteins

Probab=96.94  E-value=0.00031  Score=60.43  Aligned_cols=53  Identities=26%  Similarity=0.258  Sum_probs=32.6

Q ss_pred             HhhcCCCcccccccchhhHHHHHHhhCCCc-cCCHHHHHHHHHHHHhcCcceec
Q psy11552        136 SLYSGGRTIARRCASGSELVDWLMSLAPSL-AVSRQITTGMWQALLEEGVIYHV  188 (714)
Q Consensus       136 ~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~-~~~r~~av~l~q~Ll~~g~i~hv  188 (714)
                      +.+....++|++||+|||+||||+..-.+- .-..+=--.-+-.|+..++..||
T Consensus        17 k~rR~~lr~y~~CF~gsEAVDwL~~~l~~n~~fg~~vtR~~av~l~qkll~~hV   70 (92)
T cd04447          17 RKHRQHFKSYENCFTASEAVDWLHELLRSNSNFGPEVTRQQTVQLLKKFLKNHV   70 (92)
T ss_pred             HHHHHhcccCccccchHHHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHcCC
Confidence            344556789999999999999999974311 11111122233445666666655

BBRC3, also known as DEPDC1B, is a DEP containing protein of unknown function.

>cd04449 DEP_DEPDC5-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in DEPDC5-like proteins

Probab=96.93  E-value=0.00057  Score=58.63  Aligned_cols=20  Identities=35%  Similarity=0.479  Sum_probs=19.3

Q ss_pred             hhHHHHHHHHHhhccccccc
Q psy11552         96 RQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv  115 (714)
                      |++|+.+||.|++.|+|+||
T Consensus        49 r~eAv~lgq~Ll~~g~I~hv   68 (83)
T cd04449          49 REEAVELGQELMNEGLIEHV   68 (83)
T ss_pred             HHHHHHHHHHHHHCCCEEec
Confidence            68999999999999999999

DEPDC5, in human also known as KIAA0645, is a DEP domain containing protein of unknown function.

>cd04438 DEP_dishevelled DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in dishevelled-like proteins

Probab=96.92  E-value=0.00061  Score=58.47  Aligned_cols=26  Identities=27%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             hhHHHHHHHHHhhccccccc--------ceeeEe
Q psy11552         96 RQITTGMWQALLEEGVIYHG--------KISCFF  121 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv--------~~~y~f  121 (714)
                      |++|+.+||.|++.|+|+||        +.||+|
T Consensus        49 R~eAv~~g~~Ll~~G~i~HV~~~h~F~d~~yy~~   82 (84)
T cd04438          49 RREARKYASSLLKLGYIRHTVNKITFSEQCYYVF   82 (84)
T ss_pred             HHHHHHHHHHHHHCCcEEecCCCccccCCeEEec
Confidence            68999999999999999999        666666

Dishevelled-like proteins play a key role in the transduction of the Wnt signal from the cell surface to the nucleus, which in turn is an important regulatory pathway for cellular development and growth. They contain an N-terminal DIX domain, a central PDZ domain, and a C-terminal DEP domain.

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=96.87  E-value=0.0047  Score=62.14  Aligned_cols=75  Identities=23%  Similarity=0.354  Sum_probs=56.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC-chhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA-PSYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~-p~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      ++.+|++.+.+|+|++|.+++....    ...+..+++||.||+.+++... +..              .++.+ .+++.
T Consensus        31 l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~--------------~~~~a-~~~~~   95 (211)
T PRK11753         31 LIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS--------------AWVRA-KTACE   95 (211)
T ss_pred             EEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce--------------EEEEE-cCcEE
Confidence            7899999999999999999988632    2345578899999999988764 333              45555 55667


Q ss_pred             eeeecCCccccccch
Q psy11552        468 YKFRGPNRFQQITAN  482 (714)
Q Consensus       468 ~~~l~r~~f~~~tpn  482 (714)
                      ++.++++.|......
T Consensus        96 v~~i~~~~~~~l~~~  110 (211)
T PRK11753         96 VAEISYKKFRQLIQV  110 (211)
T ss_pred             EEEEcHHHHHHHHHH
Confidence            778888888765433

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=96.82  E-value=0.0042  Score=61.87  Aligned_cols=71  Identities=27%  Similarity=0.352  Sum_probs=56.9

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecc----eeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGK----GCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~----~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      ++.+|++++++|+|.+|.+.+.....    ..+..+++||+||+.+++.++|+.              .++.+ ..++..
T Consensus        34 l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~~~~~~--------------~~~~a-~~~~~~   98 (214)
T COG0664          34 LFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLGGDPRS--------------ASAVA-LTDVEV   98 (214)
T ss_pred             EEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhcCCCcc--------------ceEEE-cceEEE
Confidence            78999999999999999999988542    345578899999999999988776              56666 344666


Q ss_pred             eeecCCcccc
Q psy11552        469 KFRGPNRFQQ  478 (714)
Q Consensus       469 ~~l~r~~f~~  478 (714)
                      ..+++..|..
T Consensus        99 ~~~~~~~~~~  108 (214)
T COG0664          99 LEIPRKDFLE  108 (214)
T ss_pred             EEecHHHHHH
Confidence            7777777654

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=96.81  E-value=0.0048  Score=63.39  Aligned_cols=74  Identities=15%  Similarity=0.209  Sum_probs=59.0

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---cceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK  469 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~  469 (714)
                      ++++|+..+++|+|.+|.+++...   +...+..+++|+.||+.+++...|..              .++.+ .+++..+
T Consensus        41 l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~g~~~~~~~~~~~--------------~~~~A-~~~~~~~  105 (236)
T PRK09392         41 LITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTFILAAVVLDAPYL--------------MSART-LTRSRVL  105 (236)
T ss_pred             EEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchhhhHHHhCCCCCc--------------eEEEE-cCceEEE
Confidence            789999999999999999999762   23445678899999999999888776              66776 5666777


Q ss_pred             eecCCccccccc
Q psy11552        470 FRGPNRFQQITA  481 (714)
Q Consensus       470 ~l~r~~f~~~tp  481 (714)
                      .++...|.....
T Consensus       106 ~i~~~~~~~l~~  117 (236)
T PRK09392        106 MIPAELVREAMS  117 (236)
T ss_pred             EEeHHHHHHHHH
Confidence            888887765443

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=96.77  E-value=0.0012  Score=56.31  Aligned_cols=71  Identities=27%  Similarity=0.346  Sum_probs=55.9

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecc----eeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGK----GCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~----~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+++|+..+.+|+|++|.+.+.....    ..+..+.+|+.||+.+++...|..              .++.+ .+++..
T Consensus        10 i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~--------------~~~~a-~~~~~~   74 (91)
T PF00027_consen   10 IYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSP--------------FTVIA-LTDSEV   74 (91)
T ss_dssp             EEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBS--------------SEEEE-SSSEEE
T ss_pred             EEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccE--------------EEEEE-ccCEEE
Confidence            78999999999999999999988542    235688899999999999998776              56666 556666


Q ss_pred             eeecCCcccc
Q psy11552        469 KFRGPNRFQQ  478 (714)
Q Consensus       469 ~~l~r~~f~~  478 (714)
                      +.+++..|..
T Consensus        75 ~~i~~~~~~~   84 (91)
T PF00027_consen   75 LRIPREDFLQ   84 (91)
T ss_dssp             EEEEHHHHHH
T ss_pred             EEEeHHHHHH
Confidence            6676655543

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=96.73  E-value=0.0047  Score=63.25  Aligned_cols=74  Identities=8%  Similarity=0.108  Sum_probs=57.1

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      ++.+|++.+.+|+|.+|.+++..-   | ...+..+.+|+.||+.+++...|..              .++.+ .+++..
T Consensus        42 l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~--------------~~~~A-~~~~~i  106 (226)
T PRK10402         42 IVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHET--------------KAVQA-IEECWC  106 (226)
T ss_pred             EEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCC--------------ccEEE-eccEEE
Confidence            789999999999999999999772   2 2345578899999999988877765              56666 455666


Q ss_pred             eeecCCccccccc
Q psy11552        469 KFRGPNRFQQITA  481 (714)
Q Consensus       469 ~~l~r~~f~~~tp  481 (714)
                      +.+++..+.....
T Consensus       107 ~~i~~~~~~~ll~  119 (226)
T PRK10402        107 LALPMKDCRPLLL  119 (226)
T ss_pred             EEEEHHHHHHHHh
Confidence            7788877765443

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=96.70  E-value=0.0072  Score=59.81  Aligned_cols=145  Identities=17%  Similarity=0.141  Sum_probs=82.4

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      ++++|++.+++|+|++|.+++...   + ...+..+++|+.||+.+++...+..            ...++.+ .+++..
T Consensus         4 l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~------------~~~~~~A-~~~~~v   70 (193)
T TIGR03697         4 IFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSD------------RFYHAVA-FTRVEL   70 (193)
T ss_pred             eecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCc------------cceEEEE-ecceEE
Confidence            679999999999999999998772   2 2335678899999999998775321            0033444 455677


Q ss_pred             eeecCCccccccchhhhhhhhhhh-HH---HhHhhh--hccccChhhHHHHHHHHHHHHHHHhh---------cCChHHH
Q psy11552        469 KFRGPNRFQQITANLDVFLRRFNE-IQ---YWVITE--ILLVTSLNKRVQILRKMIKLAAYCKE---------YRNINAL  533 (714)
Q Consensus       469 ~~l~r~~f~~~tpnI~~~i~~fn~-ls---~wV~~~--Il~~~~~~~R~~~i~~fI~iA~~~~~---------l~Nf~s~  533 (714)
                      +.+++..|......-..+...+-. ++   ......  .+...++.+|  +...++..+...-.         +.-=+.-
T Consensus        71 ~~i~~~~~~~l~~~~p~l~~~~~~~l~~~l~~~~~~~~~l~~~~~~~R--la~~L~~l~~~~~~~~~~~~~~~~~~t~~~  148 (193)
T TIGR03697        71 LAVPIEQVEKAIEEDPDLSMLLLQGLSSRILQTEMMIETLAHRDMGSR--LVSFLLILCRDFGVPGQRGVTIDLRLSHQA  148 (193)
T ss_pred             EEeeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHHHHHHHhCCCCCCeEEecCCCCHHH
Confidence            778888877654332222222111 11   111111  2334455555  33334444443311         1112455


Q ss_pred             HHHHHhcCchhhhchHHhh
Q psy11552        534 FAVLMGLSNVAVSRLSLTW  552 (714)
Q Consensus       534 ~aI~~gL~~~~V~RLk~Tw  552 (714)
                      .|=+.|.+-..|.|.-+.|
T Consensus       149 iA~~lG~tretvsR~l~~l  167 (193)
T TIGR03697       149 IAEAIGSTRVTITRLLGDL  167 (193)
T ss_pred             HHHHhCCcHHHHHHHHHHH
Confidence            5666667667777743443

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>PF00610 DEP: Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP); InterPro: IPR000591 This entry represents the DEP (Dishevelled, Egl-10 and Pleckstrin) domain, a globular domain of about 80 residues that is found in over 50 proteins involved in G-protein signalling pathways

Probab=96.66  E-value=0.0014  Score=54.80  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=20.5

Q ss_pred             chhHHHHHHHHHhhccccccc
Q psy11552         95 SRQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        95 ~~~~a~~~~~~l~~~g~~~hv  115 (714)
                      +|++|+.+||.||+.|+|+||
T Consensus        37 ~r~eA~~l~q~Ll~~g~i~~v   57 (74)
T PF00610_consen   37 DREEAVQLGQELLDHGFIEHV   57 (74)
T ss_dssp             SHHHHHHHHHHHHHCTSEEES
T ss_pred             CHHHHHHHHHHHHHCCCEEEC
Confidence            699999999999999999999

It was named after the three proteins it was initially found in: Dishevelled (Dsh and Dvl), which play a key role in the transduction of the Wg/Wnt signal from the cell surface to the nucleus; it is a segment polarity protein required to establish coherent arrays of polarized cells and segments in embryos, and plays a role in wingless signalling. Egl-10, which regulates G-protein signalling in the central nervous system. Pleckstrin, the major substrate of protein kinase C in platelets; Pleckstrin contains two PH domains flanking the DEP domain. Mammalian regulators of G-protein signalling also contain these domains, and regulate signal transduction by increasing the GTPase activity of G-protein alpha subunits, thereby driving them into their inactive GDP-bound form. It has been proposed that the DEP domain could play a selective role in targeting DEP domain-containing proteins to specific subcellular membranous sites, perhaps even to specific G protein-coupled signaling pathways [, ]. Nuclear magnetic resonance spectroscopy has revealed that the DEP domain comprises a three-helix bundle, a beta-hairpin 'arm' composed of two beta-strands and two short beta-strands in the C-terminal region [].; GO: 0035556 intracellular signal transduction; PDB: 1UHW_A 1V3F_A 2YSR_A 2CSO_A 1W4M_A 2PBI_C 1O7F_A 2BYV_E 1FSH_A 3ML6_D ....

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=96.51  E-value=0.018  Score=57.57  Aligned_cols=139  Identities=16%  Similarity=0.144  Sum_probs=77.7

Q ss_pred             ccccCC--CCceEEEEEeCeEEEEeec---c-eeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCc
Q psy11552        393 VFHQGD--EGKSWYIIIQGSVDVVIYG---K-GCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPR  466 (714)
Q Consensus       393 i~~~g~--~~~~~YiI~~G~~~~~~~~---~-~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~  466 (714)
                      ++.+|+  +.+.+|+|++|.+.+....   . ..+..+.+||.||+.++.. .+..              .++.+ .+++
T Consensus        17 l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~~-~~~~--------------~~~~A-~~~~   80 (202)
T PRK13918         17 ILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALAG-AERA--------------YFAEA-VTDS   80 (202)
T ss_pred             EEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhcC-CCCC--------------ceEEE-cCce
Confidence            789999  6799999999999998732   2 3445678999999976653 4444              44555 4455


Q ss_pred             eeeeecCCccc-cccchhh-hhhhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh-cCC--------hHHHHH
Q psy11552        467 RYKFRGPNRFQ-QITANLD-VFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE-YRN--------INALFA  535 (714)
Q Consensus       467 ~~~~l~r~~f~-~~tpnI~-~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~-l~N--------f~s~~a  535 (714)
                      ....+++..+. .....+. .+..+......++....  ..+..  .++...+++.+..--. ..+        =+.-.|
T Consensus        81 ~v~~i~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~--~~~~~--~Rla~~Ll~l~~~~~~~~~~~~~~~~~~t~~~iA  156 (202)
T PRK13918         81 RIDVLNPALMSAEDNLVLTQHLVRTLARAYESIYRLV--GQRLK--NRIAAALLELSDTPLATQEDSGETMIYATHDELA  156 (202)
T ss_pred             EEEEEEHHHcChhhHHHHHHHHHHHHHHHHHHHHHHH--hCchH--HHHHHHHHHHHHHhCCCCCCCCeEEecCCHHHHH
Confidence            55666665552 1111111 11223333334443322  23333  4455556666654211 111        144556


Q ss_pred             HHHhcCchhhhchHHh
Q psy11552        536 VLMGLSNVAVSRLSLT  551 (714)
Q Consensus       536 I~~gL~~~~V~RLk~T  551 (714)
                      -+.|.+-..|+|.-+.
T Consensus       157 ~~lG~tretvsR~l~~  172 (202)
T PRK13918        157 AAVGSVRETVTKVIGE  172 (202)
T ss_pred             HHhCccHHHHHHHHHH
Confidence            6667777777774333

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=96.21  E-value=0.028  Score=57.67  Aligned_cols=141  Identities=16%  Similarity=0.149  Sum_probs=78.4

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec---c-eeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG---K-GCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~---~-~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      ++.+|+..+++|+|.+|.+++....   . ..+..+.+||.||+.++.....+               .++.+ .+++..
T Consensus        48 l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~~~~~~~---------------~~~~a-~~~~~i  111 (235)
T PRK11161         48 LFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAIGSGQHP---------------SFAQA-LETSMV  111 (235)
T ss_pred             eECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccccCCCCc---------------ceEEE-eccEEE
Confidence            8899999999999999999998742   2 23446689999998766543222               23344 345566


Q ss_pred             eeecCCccccccchhhhhhhh--------hhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhhc---------CChH
Q psy11552        469 KFRGPNRFQQITANLDVFLRR--------FNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY---------RNIN  531 (714)
Q Consensus       469 ~~l~r~~f~~~tpnI~~~i~~--------fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~l---------~Nf~  531 (714)
                      +.+++..|.........+...        +..+..++..  +...++++|  +...+...+...-..         .==+
T Consensus       112 ~~ip~~~f~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~R--la~~L~~l~~~~~~~~~~~~~~~~~lt~  187 (235)
T PRK11161        112 CEIPFETLDDLSGKMPKLRQQIMRLMSGEIKGDQEMILL--LSKKNAEER--LAAFIYNLSRRFAQRGFSPREFRLTMTR  187 (235)
T ss_pred             EEEEHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHH--HhCCCHHHH--HHHHHHHHHHHHhhcCCCCceeEccccH
Confidence            677787776543322222211        1112222211  223455555  333333444332111         0012


Q ss_pred             HHHHHHHhcCchhhhchHHhhc
Q psy11552        532 ALFAVLMGLSNVAVSRLSLTWD  553 (714)
Q Consensus       532 s~~aI~~gL~~~~V~RLk~Tw~  553 (714)
                      .-.|=+.|.+-..|.|+-+.|+
T Consensus       188 ~~iA~~lG~sr~tvsR~l~~l~  209 (235)
T PRK11161        188 GDIGNYLGLTVETISRLLGRFQ  209 (235)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHH
Confidence            3556666777777888655554

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=96.14  E-value=0.034  Score=57.13  Aligned_cols=142  Identities=15%  Similarity=0.109  Sum_probs=80.3

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---cce-eeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---GKG-CVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~~~-~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      ++.+|++.+++|+|++|.+++...   +.. .+..+.+||.||+.   ...+..              .++.+ ..++.+
T Consensus        49 l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~--------------~~~~A-~~ds~v  110 (230)
T PRK09391         49 IYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHR--------------FTAEA-IVDTTV  110 (230)
T ss_pred             EECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCC--------------eEEEE-cCceEE
Confidence            889999999999999999998872   232 34466799999964   222332              45555 455566


Q ss_pred             eeecCCccccccchhhhhhhhh-hhHHHhHh---hh--hccccChhhHHHHHHHHHHHHHHHhh-----cCChHHHHHHH
Q psy11552        469 KFRGPNRFQQITANLDVFLRRF-NEIQYWVI---TE--ILLVTSLNKRVQILRKMIKLAAYCKE-----YRNINALFAVL  537 (714)
Q Consensus       469 ~~l~r~~f~~~tpnI~~~i~~f-n~ls~wV~---~~--Il~~~~~~~R~~~i~~fI~iA~~~~~-----l~Nf~s~~aI~  537 (714)
                      +.++...|......-..+..++ ..++..+.   ..  .+...+.++|  +...+++.+...-.     +.-=+.-.|=+
T Consensus       111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~l~~~~~~~R--la~~Ll~l~~~~g~~~~i~i~lt~~~IA~~  188 (230)
T PRK09391        111 RLIKRRSLEQAAATDVDVARALLSLTAGGLRHAQDHMLLLGRKTAMER--VAAFLLEMDERLGGAGMMALPMSRRDIADY  188 (230)
T ss_pred             EEEEHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHhCCCCEEEecCCHHHHHHH
Confidence            7788877765443332222221 12222111   11  1233444444  44445555443221     11113456666


Q ss_pred             HhcCchhhhchHHhhcc
Q psy11552        538 MGLSNVAVSRLSLTWDK  554 (714)
Q Consensus       538 ~gL~~~~V~RLk~Tw~~  554 (714)
                      .|.+-..|+|.-+.|++
T Consensus       189 lGisretlsR~L~~L~~  205 (230)
T PRK09391        189 LGLTIETVSRALSQLQD  205 (230)
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            77777778886556553

>smart00049 DEP Domain found in Dishevelled, Egl-10, and Pleckstrin

Probab=95.86  E-value=0.0069  Score=50.96  Aligned_cols=21  Identities=38%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             hhHHHHHHHHHhhcccccccc
Q psy11552         96 RQITTGMWQALLEEGVIYHGK  116 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv~  116 (714)
                      |++|+.+||.||+.|+|+||.
T Consensus        39 r~eA~~l~~~ll~~g~i~~v~   59 (77)
T smart00049       39 REEAVHLGQLLLDEGLIHHVN   59 (77)
T ss_pred             HHHHHHHHHHHHHCCCEEEeC
Confidence            689999999999999999993

Domain of unknown function present in signalling proteins that contain PH, rasGEF, rhoGEF, rhoGAP, RGS, PDZ domains. DEP domain in Drosophila dishevelled is essential to rescue planar polarity defects and induce JNK signalling (Cell 94, 109-118).

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=95.77  E-value=0.016  Score=50.91  Aligned_cols=71  Identities=31%  Similarity=0.458  Sum_probs=51.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecc----eeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGK----GCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~----~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      ++.+|+..+.+|+|.+|.+.+.....    ..+..+++|+.||..+++.+.+..              .++.+ ..++..
T Consensus        28 l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~--------------~~~~a-~~~~~~   92 (115)
T cd00038          28 IIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPRS--------------ATVRA-LTDSEL   92 (115)
T ss_pred             EEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCCC--------------ceEEE-cCceEE
Confidence            67899999999999999999987542    445578899999999998655544              44444 345555


Q ss_pred             eeecCCcccc
Q psy11552        469 KFRGPNRFQQ  478 (714)
Q Consensus       469 ~~l~r~~f~~  478 (714)
                      ..++.+.+..
T Consensus        93 ~~i~~~~~~~  102 (115)
T cd00038          93 LVLPRSDFRR  102 (115)
T ss_pred             EEEeHHHHHH
Confidence            5666655443

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>cd04435 DEP_fRom2 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in fungal RhoGEF (GDP/GTP exchange factor) Rom2-like proteins

Probab=95.54  E-value=0.024  Score=47.33  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhhcCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEee
Q psy11552         43 RAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFF  122 (714)
Q Consensus        43 ~~~~~l~~~~~~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~  122 (714)
                      +-+.++|..+      ...+|....  -.|++.|+|.|+||-|..--.  ..+|.-|.-+|++|--..++|-|..=.|++
T Consensus         4 ~VA~~fr~~I------~~~~~~K~g--l~Y~~aFtG~~aV~~i~~ii~--t~DRnlALllgRsLdaQkfFhdV~y~hrLr   73 (82)
T cd04435           4 RVALQLRDKI------PLGDHTKDG--ITYRNSFTGKDAVTTIQGIIR--TSDRNLALLLGRSLDAQKFFHDVTYDHRLR   73 (82)
T ss_pred             HHHHHHHHhc------cccccccCC--eecCcccCcHHHHHHHHHHHh--cccHHHHHHHHHHHHHhHhhhhcccCCccc
Confidence            3455666655      233444444  689999999999999999888  599999999999999999999984434444


Q ss_pred             c
Q psy11552        123 S  123 (714)
Q Consensus       123 ~  123 (714)
                      +
T Consensus        74 D   74 (82)
T cd04435          74 D   74 (82)
T ss_pred             c
Confidence            3

Rom2-like proteins share a common domain architecture, containing, beside the RhoGEF domain, a DEP, a PH (pleckstrin homology) and a CNH domain. Rom2, a yeast GEF for Rho1 and Rho2, is involved in mediating stress response via the Ras-cAMP pathway and also plays a role in mediating resistance to sphingolipid disturbances.

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=95.48  E-value=0.012  Score=72.02  Aligned_cols=71  Identities=20%  Similarity=0.274  Sum_probs=57.4

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec---ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG---KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK  469 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~---~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~  469 (714)
                      |+.+|+.++.+|+|.+|.+++....   ...+..+.+||+|||.+++...|+.              .++++ .+++..+
T Consensus       408 I~~qge~~~~lY~I~~G~V~i~~~~~~~e~~l~~l~~Gd~FGE~~~l~~~p~~--------------~t~ra-~~~s~ll  472 (823)
T PLN03192        408 VIMQNEAPDDVYIVVSGEVEIIDSEGEKERVVGTLGCGDIFGEVGALCCRPQS--------------FTFRT-KTLSQLL  472 (823)
T ss_pred             EEECCCCCceEEEEEecEEEEEEecCCcceeeEEccCCCEecchHHhcCCCCC--------------CeEEE-cccEEEE
Confidence            7889999999999999999997632   2346689999999999999988877              66666 5666677


Q ss_pred             eecCCcccc
Q psy11552        470 FRGPNRFQQ  478 (714)
Q Consensus       470 ~l~r~~f~~  478 (714)
                      .+++++|..
T Consensus       473 ~l~~~~f~~  481 (823)
T PLN03192        473 RLKTSTLIE  481 (823)
T ss_pred             EEEHHHHHH
Confidence            778877754

>cd04450 DEP_RGS7-like DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in RGS (regulator of G-protein signaling) proteins of the subfamily R7

Probab=95.42  E-value=0.011  Score=51.37  Aligned_cols=20  Identities=10%  Similarity=0.019  Sum_probs=19.3

Q ss_pred             hhHHHHHHHHHhhccccccc
Q psy11552         96 RQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv  115 (714)
                      |+||+.+||.||+.|+|+||
T Consensus        47 ~~EA~~~~~~ll~~gli~~V   66 (88)
T cd04450          47 PSEALEIAALFVKYGLITPV   66 (88)
T ss_pred             HHHHHHHHHHHHHCCCEEEe
Confidence            68999999999999999999

This subgroup contains RGS7, RGS6, RGS9 and RGS11. They share a common domain architecture, containing, beside the RGS domain, a DEP domain and a GGL (G-protein gamma subunit-like ) domain. RGS proteins are GTPase-activating (GAP) proteins of heterotrimeric G proteins by increasing the rate of GTP hydrolysis of the alpha subunit. The fungal homologs, like yeast Sst2, share a related common domain architecture, containing RGS and DEP domains. Sst2 has been identified as the principal regulator of mating pheromone signaling and recently the DEP domain of Sst2 has been shown to be necessary and sufficient to mediate receptor interaction.

>cd04371 DEP DEP domain, named after Dishevelled, Egl-10, and Pleckstrin, where this domain was first discovered

Probab=95.40  E-value=0.007  Score=51.34  Aligned_cols=21  Identities=43%  Similarity=0.727  Sum_probs=18.4

Q ss_pred             CCCcccccccchhhHHHHHHh
Q psy11552        140 GGRTIARRCASGSELVDWLMS  160 (714)
Q Consensus       140 ~~~~~~~~cf~G~e~vdwl~~  160 (714)
                      ...+.|++||+|+|+||||++
T Consensus        20 ~~~~~~~~~F~G~e~v~WL~~   40 (81)
T cd04371          20 YHLKTYPNCFTGSELVDWLLD   40 (81)
T ss_pred             ECCEECCceeEcHHHHHHHHH
Confidence            346888999999999999986

The function of this domain is still not clear, but it is believed to be important for the membrane association of the signaling proteins in which it is present. New studies show that the DEP domain of Sst2, a yeast RGS protein is necessary and sufficient for receptor interaction.

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=95.06  E-value=0.028  Score=49.60  Aligned_cols=45  Identities=40%  Similarity=0.620  Sum_probs=38.3

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhc
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVN  437 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~  437 (714)
                      ++++|++.+++|+|.+|.+.+....    ...+..+.+|+.||+.+++.
T Consensus        28 l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~   76 (120)
T smart00100       28 IIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLT   76 (120)
T ss_pred             EEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhcc
Confidence            7889999999999999999998742    33556788999999999883

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>KOG0498|consensus

Probab=94.56  E-value=0.026  Score=66.48  Aligned_cols=50  Identities=26%  Similarity=0.391  Sum_probs=41.6

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecc---eeeeeecCCCccc-hhhhhcC-Cchh
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGK---GCVTSLYAGEDFG-KLALVNN-APSY  442 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~---~~v~~l~~gd~fg-e~~~L~~-~p~~  442 (714)
                      |++||++.+.+|+|..|.++++....   ..+..|++||+|| |...+.. -|..
T Consensus       453 iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t  507 (727)
T KOG0498|consen  453 IIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFGEELLTWCLDLPQT  507 (727)
T ss_pred             EEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccchHHHHHHhcCCCC
Confidence            89999999999999999999988553   4566999999999 7776666 3554

>KOG0499|consensus

Probab=94.04  E-value=0.044  Score=61.63  Aligned_cols=70  Identities=24%  Similarity=0.332  Sum_probs=54.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec--ceeeeeecCCCccchhhhhcC---CchhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG--KGCVTSLYAGEDFGKLALVNN---APSYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~--~~~v~~l~~gd~fge~~~L~~---~p~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |-+.|+.|..+|||..|+|+|+-+.  +.+..+|..|..|||.++|.-   +.|.              +++.+ .|-+-
T Consensus       561 VCkKGeiGkEMYIIk~GqvQVlGGp~~~~Vl~tL~~GsVFGEISLLaigG~nRRT--------------AnV~a-~Gf~n  625 (815)
T KOG0499|consen  561 VCKKGEIGKEMYIIKHGQVQVLGGPDGTKVLVTLKAGSVFGEISLLAIGGGNRRT--------------ANVVA-HGFAN  625 (815)
T ss_pred             eeecccccceeEEeecceEEEecCCCCCEEEEEecccceeeeeeeeeecCCCccc--------------hhhhh-cccce
Confidence            5688999999999999999999743  455669999999999999874   3454              67777 67666


Q ss_pred             eeeecCCccc
Q psy11552        468 YKFRGPNRFQ  477 (714)
Q Consensus       468 ~~~l~r~~f~  477 (714)
                      .+++++.+..
T Consensus       626 LfvL~KkdLn  635 (815)
T KOG0499|consen  626 LFVLDKKDLN  635 (815)
T ss_pred             eeEecHhHHH
Confidence            6777776543

>KOG0500|consensus

Probab=93.96  E-value=0.049  Score=60.22  Aligned_cols=46  Identities=33%  Similarity=0.566  Sum_probs=40.1

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeeccee-eeeecCCCccchhhhhcC
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGC-VTSLYAGEDFGKLALVNN  438 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~-v~~l~~gd~fge~~~L~~  438 (714)
                      |.+.|+.|..+|||+.|..+|+-+.+.. ...+..|++|||.++|+-
T Consensus       341 ICrKGdvgkEMyIVk~G~L~Vv~dDg~t~~~~L~~G~~FGEisIlni  387 (536)
T KOG0500|consen  341 ICRKGDVGKEMYIVKEGKLAVVADDGVTVFVTLKAGSVFGEISILNI  387 (536)
T ss_pred             EEecCcccceEEEEEccEEEEEecCCcEEEEEecCCceeeeeEEEEE
Confidence            4578999999999999999999877644 458999999999999885

>PLN02868 acyl-CoA thioesterase family protein

Probab=93.01  E-value=0.13  Score=57.79  Aligned_cols=48  Identities=21%  Similarity=0.232  Sum_probs=38.3

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec---ceeeeeecCCCccchhhhhcCCchh
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG---KGCVTSLYAGEDFGKLALVNNAPSY  442 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~---~~~v~~l~~gd~fge~~~L~~~p~~  442 (714)
                      |+++|+..+.+|+|++|.+++....   ...+..+++|++||+.  +.+.+..
T Consensus        42 I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~~--l~~~~~~   92 (413)
T PLN02868         42 VVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGYG--LSGSVHS   92 (413)
T ss_pred             EEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeehh--hCCCCcc
Confidence            8899999999999999999998733   3456678999999975  4554443

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=92.09  E-value=0.15  Score=57.51  Aligned_cols=84  Identities=20%  Similarity=0.201  Sum_probs=62.6

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      |+..|.+..++|+|.+|.|++...+.....++..||-||-.++....+..               ..-+++.+++++.++
T Consensus        41 ii~~~~p~~~l~vi~kG~vev~~~~g~v~~~~~~gdlFg~~~l~~~~~~~---------------~~~~aeedsl~y~lp  105 (610)
T COG2905          41 IIYAGSPVHYLYVIRKGVVEVRSDGGEVLDRLAAGDLFGFSSLFTELNKQ---------------RYMAAEEDSLCYLLP  105 (610)
T ss_pred             eecCCCCcceeEEEEeceeeEEcCCCeeeeeeccCccccchhhcccCCCc---------------ceeEeeccceEEecC
Confidence            56677889999999999999998887777799999999999998885443               111114477889899


Q ss_pred             CCccccccchhhhhhhhhh
Q psy11552        473 PNRFQQITANLDVFLRRFN  491 (714)
Q Consensus       473 r~~f~~~tpnI~~~i~~fn  491 (714)
                      +..|......-..+.++|.
T Consensus       106 ~s~F~ql~~~n~~f~~ff~  124 (610)
T COG2905         106 KSVFMQLMEENPEFADFFL  124 (610)
T ss_pred             HHHHHHHHHhCcHHHHHHH
Confidence            9877765555444544443

>KOG2378|consensus

Probab=90.54  E-value=0.062  Score=58.59  Aligned_cols=47  Identities=36%  Similarity=0.723  Sum_probs=37.8

Q ss_pred             CCCccchhhhccCCCcceeeec-----------------cccc-----------C------CCCceEEEEEeCeEEEEee
Q psy11552        371 AGEDFGKLALVNNAPRLIITSM-----------------VFHQ-----------G------DEGKSWYIIIQGSVDVVIY  416 (714)
Q Consensus       371 ~Gd~FGElaLl~~~pr~atv~A-----------------i~~~-----------g------~~~~~~YiI~~G~~~~~~~  416 (714)
                      .||.||.+|++++.||.||++.                 |.++           |      +..+..|.|++|+++++++
T Consensus         1 eGddfgklalvnd~praativl~ed~~~fl~vDk~~Fn~I~~~vEa~t~Rlk~~~edvlVle~~~~rYtVmsGtpEKILE   80 (573)
T KOG2378|consen    1 EGDDFGKLALVNDAPRAATIVLREDNCHFLRVDKHDFNRILHDVEANTVRLKEHGEDVLVLEKVSIRYTVMSGTPEKILE   80 (573)
T ss_pred             CCcccchhccccccccccceeeecCCCcceeecHHHHHHHHHhhhhcceehhhcCcceeeeeccccceEEecCCHHHHHH
Confidence            5999999999999999999996                 1111           1      2445589999999999987


Q ss_pred             c
Q psy11552        417 G  417 (714)
Q Consensus       417 ~  417 (714)
                      +
T Consensus        81 ~   81 (573)
T KOG2378|consen   81 H   81 (573)
T ss_pred             H
Confidence            6

>KOG0501|consensus

Probab=88.32  E-value=0.31  Score=54.87  Aligned_cols=71  Identities=20%  Similarity=0.286  Sum_probs=52.8

Q ss_pred             EEecCCCccchhhhccCCCcceeeecccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcC
Q psy11552        367 TSLYAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNN  438 (714)
Q Consensus       367 ~~l~~Gd~FGElaLl~~~pr~atv~Ai~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~  438 (714)
                      ..|....+.-.+|+.....+.|----+++.|+..|.+.+|.+|+.+|+.+. .+|+.|++||.||..=--++
T Consensus       556 FRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVsGSLEVIQDD-EVVAILGKGDVFGD~FWK~~  626 (971)
T KOG0501|consen  556 FRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVSGSLEVIQDD-EVVAILGKGDVFGDEFWKEN  626 (971)
T ss_pred             eeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEecceEEeecC-cEEEEeecCccchhHHhhhh
Confidence            344555555556665554444444448999999999999999999999876 77889999999998544333

>TIGR00869 sec62 protein translocation protein, Sec62 family

Probab=82.66  E-value=2.5  Score=43.23  Aligned_cols=58  Identities=17%  Similarity=0.200  Sum_probs=45.1

Q ss_pred             cchhhHHHHHHhhCCC-----------ccCCHHHHHHHHHHHHhcCcceecC------------------------CCcc
Q psy11552        149 ASGSELVDWLMSLAPS-----------LAVSRQITTGMWQALLEEGVIYHVN------------------------GEQA  193 (714)
Q Consensus       149 f~G~e~vdwl~~~~~~-----------~~~~r~~av~l~q~Ll~~g~i~hv~------------------------~~~~  193 (714)
                      |-|+++|+||++....           -..+|++|..+++.|+..|++..|+                        .++.
T Consensus        22 FRgkr~vraL~s~~y~~~~~k~~~~lp~i~~r~da~~~~~~Li~~~l~~R~~k~~~~~~~~~~kkp~k~~p~L~i~~~Q~  101 (232)
T TIGR00869        22 FRVKRFVRALHSEEYANKSAKQPEIYPTIPSRLEAIEIFILLIKNQMVIRVDKLPSQECKEHKQKPSQDFPHLQVNNKQQ  101 (232)
T ss_pred             eeHHHHHHHHhCcHhhhhcccCcccCCCCCCHHHHHHHHHHHHHcCCEEEEEecccccccccccCccCCCcceEeccccc
Confidence            7899999999974210           1367999999999999999998762                        2446


Q ss_pred             ccCcCceeeeccCc
Q psy11552        194 FRDKCILYNFWQDK  207 (714)
Q Consensus       194 F~d~~~~Yrf~~d~  207 (714)
                      | |++.||-+..+.
T Consensus       102 F-d~d~~YvW~ye~  114 (232)
T TIGR00869       102 F-EDDMYYVWNYNP  114 (232)
T ss_pred             c-CCCceEEEEecC
Confidence            7 556789988874

protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=81.31  E-value=13  Score=35.38  Aligned_cols=64  Identities=16%  Similarity=0.236  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHhhcceEEeecCCCEEEccCC-cCCeEEEEEEeEEEEEEeCceEEEEecCCCccch
Q psy11552        313 HLSNSVRRELAGVVMFEAHPRKGEILFHQGD-EGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGK  377 (714)
Q Consensus       313 ~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd-~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGE  377 (714)
                      +.|..+.++|+.+........+|+.-.-||. +.+.+-++++|.+.|...+. .+..+.|-++..-
T Consensus        14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~~g~-fLH~I~p~qFlDS   78 (153)
T PF04831_consen   14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSCDGR-FLHYIYPYQFLDS   78 (153)
T ss_pred             CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEECCE-eeEeecccccccC
Confidence            4588999999997677778999999999996 67999999999999998876 6777777655443

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	714
3cf6_E	694	Structure Of Epac2 In Complex With Cyclic-Amp And R		4e-72
4f7z_A	999	Conformational Dynamics Of Exchange Protein Directl		7e-72
2byv_E	999	Structure Of The Camp Responsive Exchange Factor Ep		8e-72
1o7f_A	469	Crystal Structure Of The Regulatory Domain Of Epac2		1e-42
1o7f_A	469	Crystal Structure Of The Regulatory Domain Of Epac2		2e-05
2ije_S	240	Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Le		2e-15
3qxl_A	271	Crystal Structure Of The Cdc25 Domain From Ral-Spec		4e-15
1xd4_A	852	Crystal Structure Of The Dh-Ph-Cat Module Of Son Of		3e-10
2ii0_A	490	Crystal Structure Of Catalytic Domain Of Son Of Sev		3e-10
1xd2_C	484	Crystal Structure Of A Ternary Ras:sos:ras*gdp Comp		3e-10
1xdv_A	847	Experimentally Phased Structure Of Human The Son Of		3e-10
3ksy_A	1049	Crystal Structure Of The Histone Domain, Dh-Ph Unit		3e-10
1bkd_S	477	Complex Of Human H-Ras With Human Sos-1 Length = 47		3e-10
1nvu_S	481	Structural Evidence For Feedback Activation By Rasg		3e-10
2d93_A	134	Solution Structure Of The Cnmp_binding Domain Of Hu		6e-07
4din_B	381	Novel Localization And Quaternary Structure Of The		2e-06
4din_B	381	Novel Localization And Quaternary Structure Of The		6e-05
3of1_A	246	Crystal Structure Of Bcy1, The Yeast Regulatory Sub		4e-06
3of1_A	246	Crystal Structure Of Bcy1, The Yeast Regulatory Sub		2e-04
3idb_B	161	Crystal Structure Of (108-268)riib:c Holoenzyme Of		8e-06
3idc_B	164	Crystal Structure Of (102-265)riib:c Holoenzyme Of		9e-06
1rl3_A	288	Crystal Structure Of Camp-free R1a Subunit Of Pka L		1e-05
1rl3_A	288	Crystal Structure Of Camp-free R1a Subunit Of Pka L		3e-04
1ne4_A	283	Crystal Structure Of Rp-Camp Binding R1a Subunit Of		1e-05
1ne4_A	283	Crystal Structure Of Rp-Camp Binding R1a Subunit Of		3e-04
3pvb_B	160	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		1e-05
3pvb_B	160	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		3e-04
1cx4_A	305	Crystal Structure Of A Deletion Mutant Of The Type		1e-05
2qcs_B	291	A Complex Structure Between The Catalytic And Regul		1e-05
2qcs_B	291	A Complex Structure Between The Catalytic And Regul		3e-04
3tnp_B	416	Structure And Allostery Of The Pka Riib Tetrameric		3e-05
3fhi_B	154	Crystal Structure Of A Complex Between The Catalyti		3e-05
3tnq_A	416	Structure And Allostery Of The Pka Riib Tetrameric		3e-05

>pdb|3CF6|E Chain E, Structure Of Epac2 In Complex With Cyclic-Amp And Rap Length = 694

Iteration: 1
 Score =  269 bits (687), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 129/246 (52%), Positives = 169/246 (68%), Gaps = 33/246 (13%)
Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G + F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+CKEY
Sbjct: 481 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY 540
Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +KL+
Sbjct: 541 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLE 600
Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
            P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct: 601 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 660
Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                            K   +V+SYV  L  +DNQR L+ MS 
Sbjct: 661 ---------------------------------KNHQDVRSYVRQLNVIDNQRTLSQMSH 687
Query: 708 KLEPRR 713
           +LEPRR
Sbjct: 688 RLEPRR 693

>pdb|4F7Z|A Chain A, Conformational Dynamics Of Exchange Protein Directly Activated By Camp Length = 999

Iteration: 1
 Score =  268 bits (685), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 129/246 (52%), Positives = 169/246 (68%), Gaps = 33/246 (13%)
Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G + F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+CKEY
Sbjct: 786 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY 845
Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +KL+
Sbjct: 846 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLE 905
Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
            P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct: 906 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 965
Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                            K   +V+SYV  L  +DNQR L+ MS 
Sbjct: 966 ---------------------------------KNHQDVRSYVRQLNVIDNQRTLSQMSH 992
Query: 708 KLEPRR 713
           +LEPRR
Sbjct: 993 RLEPRR 998

>pdb|2BYV|E Chain E, Structure Of The Camp Responsive Exchange Factor Epac2 In Its Auto-Inhibited State Length = 999

Iteration: 1
 Score =  268 bits (685), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 129/246 (52%), Positives = 169/246 (68%), Gaps = 33/246 (13%)
Query: 468 YKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY 527
           Y   G + F++ TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+CKEY
Sbjct: 786 YHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEY 845
Query: 528 RNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ 587
           +N+N+ FA++MGLSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +KL+
Sbjct: 846 KNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLE 905
Query: 588 SPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVD 647
            P+IPFMPLL+KD+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D    +
Sbjct: 906 PPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDAAQAN 965
Query: 648 GLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQ 707
                                            K   +V+SYV  L  +DNQR L+ MS 
Sbjct: 966 ---------------------------------KNHQDVRSYVRQLNVIDNQRTLSQMSH 992
Query: 708 KLEPRR 713
           +LEPRR
Sbjct: 993 RLEPRR 998

>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2 Length = 469

Iteration: 1
 Score =  171 bits (433), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 95/241 (39%), Positives = 129/241 (53%), Gaps = 41/241 (17%)
Query: 146 RRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ 205
           R+C  G+ELVDW++    S   SR    GMWQ LLE+GV+ HV+ E+ F+DK + Y F  
Sbjct: 221 RQCCVGTELVDWMIQ-QTSCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLD 279
Query: 206 DKEGSSSQATAQDIXXXXXXXXXXXXXXXRRAPDAILRYILRKQLKKLQNRYLPREYMLH 265
           D+   +   T ++                +  PDA +R ILRK                 
Sbjct: 280 DEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRK----------------- 322
Query: 266 LXXXXXXXXXXXXXXXXXXXQIGKPLDRTSEDLEQIYEEXXXXXXXXXXSNSVRRELAGV 325
                                   P  RT +DLE IY+E          S +V+RELAGV
Sbjct: 323 -----------------------PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGV 359
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 385
           ++FE+H + G +LF+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+AP
Sbjct: 360 LIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAP 419
Query: 386 R 386
           R
Sbjct: 420 R 420

>pdb|1O7F|A Chain A, Crystal Structure Of The Regulatory Domain Of Epac2 Length = 469

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 289 KPLDRTSEDLEQIYEEXXXXXXXXXXSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSW 348
           +PL+R+SED++ I+              ++ R++     +E +  KG  LF QGD G +W
Sbjct: 28  RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYE-NLEKGITLFRQGDIGTNW 86
Query: 349 YIIIQGSVDVVIYGKGC------VTSLYAGEDFGKLALVNNAPR 386
           Y ++ GS+DV +           + +L  G  FG+ ++++N PR
Sbjct: 87  YAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPR 129

>pdb|2IJE|S Chain S, Crystal Structure Of The Cdc25 Domain Of Rasgrf1 Length = 240

Iteration: 1
 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 3/167 (1%)
Query: 488 RRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSR 547
           + FN +  ++ +EI+    ++ R   + K + +A  C+   N NA+  +   ++  A+ R
Sbjct: 51  KHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSSINRSAIFR 110
Query: 548 LSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDG 607
           L  TW K+  ++K    +L+ L+      +  R+++     P +P++ + L DL F  +G
Sbjct: 111 LKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEG 170
Query: 608 NKTVV-DGLVNFEKMHMFAQTLRTLRYCR--TRHLDHDKTVVDGLVN 651
                 DGLVNF KM M +  +R +R  +  T  +D    V+  L++
Sbjct: 171 TPNYTEDGLVNFSKMRMISHIIREIRQFQQTTYKIDPQPKVIQYLLD 217

>pdb|3QXL|A Chain A, Crystal Structure Of The Cdc25 Domain From Ral-Specific Guanine- Nucleotide Exchange Factor Ralgps1a Length = 271

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 72/126 (57%), Gaps = 1/126 (0%)
Query: 479 ITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLM 538
           +  N+  F RRFN++ +WV+ EIL   +L  R +IL   +K+A    E  N+++L +V+ 
Sbjct: 69  LAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVS 128
Query: 539 GLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ-SPVIPFMPLL 597
            L +  + RL+ TW  L  K K T+ +L+ L+    N++  R+ +  L+  P IP++ + 
Sbjct: 129 ALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIY 188
Query: 598 LKDLAF 603
           L DL +
Sbjct: 189 LLDLIY 194

>pdb|1XD4|A Chain A, Crystal Structure Of The Dh-Ph-Cat Module Of Son Of Sevenless (Sos) Length = 852

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 621 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 680
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 681 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 735
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
            L ++  T +GN  V+      L+NF K    A+
Sbjct: 736 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 769

>pdb|2II0|A Chain A, Crystal Structure Of Catalytic Domain Of Son Of Sevenless (Rem-Cdc25) In The Absence Of Ras Length = 490

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 259 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 318
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 319 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 373
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
            L ++  T +GN  V+      L+NF K    A+
Sbjct: 374 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 407

>pdb|1XD2|C Chain C, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex Length = 484

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 253 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 312
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 313 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 367
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
            L ++  T +GN  V+      L+NF K    A+
Sbjct: 368 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 401

>pdb|1XDV|A Chain A, Experimentally Phased Structure Of Human The Son Of Sevenless Protein At 4.1 Ang. Length = 847

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 621 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 680
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 681 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 735
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
            L ++  T +GN  V+      L+NF K    A+
Sbjct: 736 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 769

>pdb|3KSY|A Chain A, Crystal Structure Of The Histone Domain, Dh-Ph Unit, And Catalytic Unit Of The Ras Activator Son Of Sevenless (Sos) Length = 1049

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 818 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 877
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 878 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 932
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
            L ++  T +GN  V+      L+NF K    A+
Sbjct: 933 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 966

>pdb|1BKD|S Chain S, Complex Of Human H-Ras With Human Sos-1 Length = 477

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 251 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 310
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 311 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 365
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
            L ++  T +GN  V+      L+NF K    A+
Sbjct: 366 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 399

>pdb|1NVU|S Chain S, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-Specific Nucleotide Exchange Factor Sos Length = 481

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 80/154 (51%), Gaps = 12/154 (7%)
Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 253 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 312
Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS---PVIPFMPL 596
           +++  V RL  T++++PS+ KK   E   L   S++H  Y++ ++KL+S   P +PF  +
Sbjct: 313 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL---SEDH--YKKYLAKLRSINPPCVPFFGI 367
Query: 597 LLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQ 626
            L ++  T +GN  V+      L+NF K    A+
Sbjct: 368 YLTNILKTEEGNPEVLKRHGKELINFSKRRKVAE 401

>pdb|2D93|A Chain A, Solution Structure Of The Cnmp_binding Domain Of Human Rap Guanine Nucleotide Exchange Factor 6 Length = 134

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 298 LEQIYEEXXXXXXXXXXSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVD 357
           +EQ+ E           + SVRREL  V++FE   + G I+   G E  SWY+I+ G+V+
Sbjct: 11  IEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVE 70
Query: 358 VVIYGKGCVTSLYAGEDFG 376
           +  +  G V +L+ G  FG
Sbjct: 71  IS-HPDGKVENLFMGNSFG 88

>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri Beta Holoenzyme Length = 381

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           MF      GE +  QG+EG ++Y++ QG VDV + G+  VT++  G  FG+LAL+   PR
Sbjct: 153 MFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGE-WVTNISEGGSFGELALIYGTPR 211

>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri Beta Holoenzyme Length = 381

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 388 IITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
           I    V  QG+EG ++Y++ QG VDV + G+  VT++  G  FG+LAL+   P
Sbjct: 159 IAGETVIQQGNEGDNFYVVDQGEVDVYVNGE-WVTNISEGGSFGELALIYGTP 210

>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of Pka Length = 246

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 36/52 (69%)
Query: 335 GEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           GE +  +GD+G+++Y+I  G+VDV   G+G +  L   + FG++AL+N+ PR
Sbjct: 156 GETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPR 207

>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of Pka Length = 246

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
           +  +GD+G+++Y+I  G+VDV   G+G +  L   + FG++AL+N+ P
Sbjct: 159 IIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLP 206

>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp- Dependent Protein Kinase Length = 161

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVN 382
            MFE   ++GE +  QGD+G ++Y+I +G+ D+ +   G   CV +      FG+LAL+ 
Sbjct: 60  AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 119
Query: 383 NAPR 386
           N PR
Sbjct: 120 NTPR 123

>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp- Dependent Protein Kinase Length = 164

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVN 382
            MFE   ++GE +  QGD+G ++Y+I +G+ D+ +   G   CV +      FG+LAL+ 
Sbjct: 66  AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 125
Query: 383 NAPR 386
           N PR
Sbjct: 126 NTPR 129

>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka Length = 288

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           MF      GE +  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   PR
Sbjct: 60  MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPR 118

>pdb|1RL3|A Chain A, Crystal Structure Of Camp-free R1a Subunit Of Pka Length = 288

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 387 LIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
            I    V  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   P
Sbjct: 65  FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 117

>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp- Dependent Protein Kinase Length = 283

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           MF      GE +  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   PR
Sbjct: 58  MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPR 116

>pdb|1NE4|A Chain A, Crystal Structure Of Rp-Camp Binding R1a Subunit Of Camp- Dependent Protein Kinase Length = 283

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 387 LIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
            I    V  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   P
Sbjct: 63  FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 115

>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 160

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 385
            MF      GE +  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   P
Sbjct: 67  AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 125
Query: 386 R 386
           R
Sbjct: 126 R 126

>pdb|3PVB|B Chain B, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 160

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 387 LIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
            I    V  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   P
Sbjct: 73  FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 125

>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta Regulatory Subunit Of Camp-Dependent Protein Kinase Length = 305

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNN 383
           MFE   ++GE +  QGD+G ++Y+I +G+ D+ +   G   CV +      FG+LAL+ N
Sbjct: 57  MFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYN 116
Query: 384 APR 386
            PR
Sbjct: 117 TPR 119

>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 291

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           MF      GE +  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   PR
Sbjct: 62  MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPR 120

>pdb|2QCS|B Chain B, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 291

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 387 LIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
            I    V  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   P
Sbjct: 67  FIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTP 119

>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric Holoenzyme Length = 416

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVN 382
            MFE   ++GE +  QGD+G ++Y+I +G+ D+ +   G   CV +      FG+LAL+ 
Sbjct: 167 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 226
Query: 383 NAPR 386
           N P+
Sbjct: 227 NTPK 230

>pdb|3FHI|B Chain B, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 154

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           MF      GE +  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   PR
Sbjct: 61  MFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPR 119

>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric Holoenzyme Length = 416

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVN 382
            MFE   ++GE +  QGD+G ++Y+I +G+ D+ +   G   CV +      FG+LAL+ 
Sbjct: 167 AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMY 226
Query: 383 NAPR 386
           N P+
Sbjct: 227 NTPK 230

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	714
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	1e-63
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	2e-32
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	1e-12
2ije_S	240	Guanine nucleotide-releasing protein; rasgrf1, CDC	7e-63
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	8e-63
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	2e-53
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	3e-27
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	1e-12
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	3e-12
3qxl_A	271	RAS-specific guanine nucleotide-releasing factor;	2e-61
2ii0_A	490	SOS-1, SON of sevenless homolog 1; signaling prote	4e-50
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	1e-49
3t6a_A	333	Breast cancer anti-estrogen resistance protein 3;	1e-44
3t6g_A	331	SH2 domain-containing protein 3C; CDC25-homology d	2e-38
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	8e-33
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	3e-20
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	2e-31
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	5e-13
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	2e-21
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	1e-11
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	3e-21
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	2e-11
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	2e-17
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	1e-09
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	8e-16
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	7e-11
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	1e-06
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	7e-06
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	2e-15
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	3e-13
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	2e-08
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	2e-08
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	5e-15
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	6e-10
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	2e-06
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	3e-05
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	7e-15
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	3e-10
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	1e-06
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	1e-05
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	1e-14
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	3e-10
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	2e-06
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	6e-05
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	8e-12
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	3e-05
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	2e-11
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	8e-06
1fsh_A	105	Dishevelled-1; three-helix bundle, beta-ARM, signa	3e-11
1fsh_A	105	Dishevelled-1; three-helix bundle, beta-ARM, signa	2e-07
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	7e-11
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	2e-10
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	5e-05
2ysr_A	105	DEP domain-containing protein 1; structural genomi	3e-10
2ysr_A	105	DEP domain-containing protein 1; structural genomi	3e-06
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	4e-10
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	2e-04
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	9e-10
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	4e-04
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	5e-08
1v3f_A	120	Pleckstrin 2; three-helix bundle, structural genom	8e-08
1v3f_A	120	Pleckstrin 2; three-helix bundle, structural genom	8e-07
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	8e-08
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	1e-07
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	1e-07
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	2e-07
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	2e-07
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	1e-04
1uhw_A	109	Pleckstrin; three-helix bundle, beta-ARM, riken st	3e-07
1uhw_A	109	Pleckstrin; three-helix bundle, beta-ARM, riken st	2e-06
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	3e-07
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	1e-04
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	6e-07
2cso_A	127	Pleckstrin; DEP domain, platelet P47 protein, stru	9e-07
2cso_A	127	Pleckstrin; DEP domain, platelet P47 protein, stru	7e-06
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	2e-06
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	3e-06
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	6e-06
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	1e-05
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	1e-05
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	2e-05
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	2e-05
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	3e-05
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	3e-05
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	4e-05
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	5e-05
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	5e-05
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	6e-05
1ft9_A	222	Carbon monoxide oxidation system transcription reg	1e-04
3b02_A	195	Transcriptional regulator, CRP family; structural	2e-04
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	2e-04
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	3e-04
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	3e-04

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694

 Score =  223 bits (569), Expect = 1e-63
 Identities = 126/234 (53%), Positives = 162/234 (69%), Gaps = 33/234 (14%)

Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+CKEY+N+N+ FA++MG
Sbjct: 493 TANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMG 552

Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLK 599
           LSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +KL+ P+IPFMPLL+K
Sbjct: 553 LSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIK 612

Query: 600 DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFA 659
           D+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D                 
Sbjct: 613 DMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDA---------------- 656

Query: 660 QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRR 713
                                K   +V+SYV  L  +DNQR L+ MS +LEPRR
Sbjct: 657 -----------------AQANKNHQDVRSYVRQLNVIDNQRTLSQMSHRLEPRR 693

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694

 Score =  132 bits (333), Expect = 2e-32
 Identities = 64/98 (65%), Positives = 83/98 (84%)

Query: 289 KPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSW 348
            P  RT +DLE IY+ELLH+K L HLS +V+RELAGV++FE+H + G +LF+QG+EG SW
Sbjct: 18  PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSW 77

Query: 349 YIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           YII++GSV+VVIYGKG V +L+ G+DFGKLALVN+APR
Sbjct: 78  YIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPR 115

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Length = 694

 Score = 70.2 bits (171), Expect = 1e-12
 Identities = 34/50 (68%), Positives = 46/50 (92%)

Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
           +++F+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+AP
Sbjct: 65  TVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAP 114

>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240

 Score =  208 bits (532), Expect = 7e-63
 Identities = 49/235 (20%), Positives = 95/235 (40%), Gaps = 38/235 (16%)

Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           T  +    + FN +  ++ +EI+    ++ R   + K + +A  C+   N NA+  +   
Sbjct: 43  TPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWVAVADICRCLHNYNAVLEITSS 102

Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLK 599
           ++  A+ RL  TW K+  ++K    +L+ L+      +  R+++     P +P++ + L 
Sbjct: 103 INRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYLT 162

Query: 600 DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFA 659
           DL F  +G     +                                 DGLVNF KM M +
Sbjct: 163 DLVFIEEGTPNYTE---------------------------------DGLVNFSKMRMIS 189

Query: 660 QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRRS 714
             +R +R  +     +DP     + +V  Y+     M ++  L   S  +EP+  
Sbjct: 190 HIIREIRQFQQTTYKIDP-----QPKVIQYLLDESFMLDEESLYESSLLIEPKLP 239

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score =  225 bits (575), Expect = 8e-63
 Identities = 126/234 (53%), Positives = 162/234 (69%), Gaps = 33/234 (14%)

Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           TANLD+FLRRFNEIQ+WV+TE+ L + L+KRVQ+L+K IK+AA+CKEY+N+N+ FA++MG
Sbjct: 798 TANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMG 857

Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLK 599
           LSNVAVSRL+LTW+KLPSK KK Y E E+L+DPS+NHRAYR   +KL+ P+IPFMPLL+K
Sbjct: 858 LSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIK 917

Query: 600 DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFA 659
           D+ FTH+GNKT +D LVNFEKM M A T RT+RY R++  + D                 
Sbjct: 918 DMTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQPFNPDA---------------- 961

Query: 660 QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRR 713
                                K   +V+SYV  L  +DNQR L+ MS +LEPRR
Sbjct: 962 -----------------AQANKNHQDVRSYVRQLNVIDNQRTLSQMSHRLEPRR 998

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score =  198 bits (503), Expect = 2e-53
 Identities = 106/241 (43%), Positives = 147/241 (60%), Gaps = 41/241 (17%)

Query: 146 RRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ 205
           R+C  G+ELVDW++     +  SR    GMWQ LLE+GV+ HV+ E+ F+DK + Y F  
Sbjct: 221 RQCCVGTELVDWMIQQTSCVH-SRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLD 279

Query: 206 DKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLH 265
           D+   +   T ++  E +E L++ +L L++  PDA +R ILRK                 
Sbjct: 280 DEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRK----------------- 322

Query: 266 LEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGV 325
                                   P  RT +DLE IY+ELLH+K L HLS +V+RELAGV
Sbjct: 323 -----------------------PPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGV 359

Query: 326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 385
           ++FE+H + G +LF+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+AP
Sbjct: 360 LIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAP 419

Query: 386 R 386
           R
Sbjct: 420 R 420

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score =  117 bits (294), Expect = 3e-27
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 48/168 (28%)

Query: 225 HLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEE 284
            +       A     A     L K                                    
Sbjct: 4   GIPMVAAHAAHSQSSAEWIACLDK------------------------------------ 27

Query: 285 RQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDE 344
               +PL+R+SED++ I+  L  +K       ++ R++     +E    KG  LF QGD 
Sbjct: 28  ----RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLE-KGITLFRQGDI 82

Query: 345 GKSWYIIIQGSVDVVIYGK------GCVTSLYAGEDFGKLALVNNAPR 386
           G +WY ++ GS+DV +           + +L  G  FG+ ++++N PR
Sbjct: 83  GTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPR 129

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score = 70.6 bits (172), Expect = 1e-12
 Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 5/138 (3%)

Query: 28  HYTTTLQSSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMS 87
                 ++ PS  + RAG +LR  +L+     +RDRK        R+C  G+ELVDW++ 
Sbjct: 178 DRIPDKENVPSEKILRAGKILRIAILSRAPHMIRDRKYHLKTY--RQCCVGTELVDWMIQ 235

Query: 88  LAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETE--TIPMERIYYSLYSGGRTIA 145
               +  SR    GMWQ LLE+GV+ H      F  +        +    +         
Sbjct: 236 QTSCVH-SRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKK 294

Query: 146 RRCASGSELVDWLMSLAP 163
                  + +  L  + P
Sbjct: 295 ECDEELQDTMLLLSQMGP 312

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score = 69.1 bits (168), Expect = 3e-12
 Identities = 34/50 (68%), Positives = 46/50 (92%)

Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
           +++F+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+AP
Sbjct: 370 TVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAP 419

>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens} Length = 271

 Score =  206 bits (525), Expect = 2e-61
 Identities = 45/174 (25%), Positives = 84/174 (48%), Gaps = 1/174 (0%)

Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
             N+  F RRFN++ +WV+ EIL   +L  R +IL   +K+A    E  N+++L +V+  
Sbjct: 70  APNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHFVKIAKKLLELNNLHSLMSVVSA 129

Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQS-PVIPFMPLLL 598
           L +  + RL+ TW  L  K K T+ +L+ L+    N++  R+ +  L+  P IP++ + L
Sbjct: 130 LQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGIYL 189

Query: 599 KDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNF 652
            DL +           + N ++ +     LR +   +        T +  +  +
Sbjct: 190 LDLIYIDSAYPASGSIMENEQRSNQMNNILRIIADLQVSCSYDHLTTLPHVQKY 243

>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S Length = 490

 Score =  181 bits (461), Expect = 4e-50
 Identities = 48/241 (19%), Positives = 93/241 (38%), Gaps = 43/241 (17%)

Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 259 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 318

Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLK 599
           +++  V RL  T++++PS+ KK   E   L     +++ Y   +  +  P +PF  + L 
Sbjct: 319 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLT 376

Query: 600 DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFA 659
           ++  T +GN  V+                                    L+NF K    A
Sbjct: 377 NILKTEEGNPEVLKRHGK------------------------------ELINFSKRRKVA 406

Query: 660 QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTS------MSQKLEPRR 713
           +    ++  + +   L       ES++K +   L  M N             S ++EPR 
Sbjct: 407 EITGEIQQYQNQPYCLRV-----ESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRN 461

Query: 714 S 714
            
Sbjct: 462 P 462

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A Length = 1049

 Score =  186 bits (474), Expect = 1e-49
 Identities = 49/241 (20%), Positives = 95/241 (39%), Gaps = 43/241 (17%)

Query: 480  TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
            + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 818  SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 877

Query: 540  LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLK 599
            +++  V RL  T++++PS+ KK   E   L     +++ Y   +  +  P +PF  + L 
Sbjct: 878  MNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLT 935

Query: 600  DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFA 659
            ++  T +GN  V+                                    L+NF K    A
Sbjct: 936  NILKTEEGNPEVLKRHGK------------------------------ELINFSKRRKVA 965

Query: 660  QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRI------LTSMSQKLEPRR 713
            +    ++  + +   L       ES++K +   L  M N         L + S ++EPR 
Sbjct: 966  EITGEIQQYQNQPYCLRV-----ESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRN 1020

Query: 714  S 714
             
Sbjct: 1021 P 1021

>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens} Length = 333

 Score =  162 bits (410), Expect = 1e-44
 Identities = 48/233 (20%), Positives = 84/233 (36%), Gaps = 18/233 (7%)

Query: 486 FLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCKE-YRNINALFAVLMGLSNV 543
            + R N +   +  +IL  T +L  R   L K+I++A   K+   ++ +  A++  L   
Sbjct: 98  IIERHNTMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMP 157

Query: 544 AVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAF 603
            ++RL  TW  L  +  +T    E  + P      +    S    P    +PLL+  +  
Sbjct: 158 QITRLEKTWTALRHQYTQTAILYEKQLKPFSK-LLHEGRESTCVPPNNVSVPLLMPLV-T 215

Query: 604 THDGNKTVVDGLVNFEKMHMFAQT-LRTLRYCRT--RHLD-HDKTVVDGLVNFEKMHMFA 659
             +      +G   +EK     +  L  L   R      D +       L  F+      
Sbjct: 216 LMERQAVTFEGTDMWEKNDQSCEIMLNHLATARFMAEAADSYRMNAERILAGFQPDEEMN 275

Query: 660 QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPR 712
           +  +T    R           + E          R     +ILT++S+KLEP 
Sbjct: 276 EICKTEFQMRLLWGSKGAQVNQTE----------RYEKFNQILTALSRKLEPP 318

>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Length = 331

 Score =  144 bits (364), Expect = 2e-38
 Identities = 48/248 (19%), Positives = 79/248 (31%), Gaps = 50/248 (20%)

Query: 486 FLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCKE-YRNINALFAVLMGLSNV 543
            L RF+ +   +  +IL  T S  +R  +L K I+LAA  +    N+ +  AV+  L   
Sbjct: 99  LLERFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMA 158

Query: 544 AVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMP---LLLKD 600
            +SRL  TW  L  +  +     E  + P        +    L +   P +     LL+ 
Sbjct: 159 QISRLEQTWVTLRQRHTEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHVLPLITLLES 218

Query: 601 LAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQ 660
            +   +G +         E +                           L + E     A 
Sbjct: 219 DSAPPEGPEPWGSTEHGVEVV---------------------------LAHLEAARTVAH 251

Query: 661 TLRTLRYCRTRHLVLDPPTPKCE----------------SEVKSYVSCLRAMDNQRILTS 704
                 Y     + L     + E                S+  S     R     ++LT+
Sbjct: 252 HGG--LYHTNAEVKLQGFQARPELLEVFSTEFQMRLLWGSQGASSSQARRYEKFDKVLTA 309

Query: 705 MSQKLEPR 712
           +S KLEP 
Sbjct: 310 LSHKLEPA 317

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score =  131 bits (330), Expect = 8e-33
 Identities = 106/243 (43%), Positives = 146/243 (60%), Gaps = 41/243 (16%)

Query: 144 IARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNF 203
             R+C  G+ELVDW++        SR    GMWQ LLE+GV+ HV+ E+ F+DK + Y F
Sbjct: 219 TYRQCCVGTELVDWMIQQTSC-VHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRF 277

Query: 204 WQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYM 263
             D+   +   T ++  E +E L++ +L L++  PDA +R ILRK               
Sbjct: 278 LDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKP-------------- 323

Query: 264 LHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELA 323
                                     P  RT +DLE IY+ELLH+K L HLS +V+RELA
Sbjct: 324 --------------------------PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELA 357

Query: 324 GVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNN 383
           GV++FE+H + G +LF+QG+EG SWYII++GSV+VVIYGKG V +L+ G+DFGKLALVN+
Sbjct: 358 GVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVND 417

Query: 384 APR 386
           APR
Sbjct: 418 APR 420

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 93.4 bits (231), Expect = 3e-20
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 8/104 (7%)

Query: 289 KPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSW 348
           +PL+R+SED++ I+  L  +K       ++ R++     +E    KG  LF QGD G +W
Sbjct: 28  RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLE-KGITLFRQGDIGTNW 86

Query: 349 YIIIQGSVDVVIYGKG------CVTSLYAGEDFGKLALVNNAPR 386
           Y ++ GS+DV +           + +L  G  FG+ ++++N PR
Sbjct: 87  YAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPR 129

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score =  118 bits (298), Expect = 2e-31
 Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

Query: 288 GKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKS 347
           G       +D+EQ+ E +  L    +++ SVRREL  V++FE   + G I+   G E  S
Sbjct: 1   GSSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDS 60

Query: 348 WYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           WY+I+ G+V++     G V +L+ G  FG    ++    
Sbjct: 61  WYVILNGTVEISH-PDGKVENLFMGNSFGITPTLDKQYM 98

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 65.5 bits (160), Expect = 5e-13
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
           +++   G E  SWY+I+ G+V++     G V +L+ G  FG    ++   
Sbjct: 49  AIILEDGQELDSWYVILNGTVEISH-PDGKVENLFMGNSFGITPTLDKQY 97

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 90.5 bits (225), Expect = 2e-21
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 2/111 (1%)

Query: 276 EEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKG 335
           E   EE+    + K + +  + +  + + +       HL ++ R ++    MF      G
Sbjct: 11  EVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDA-MFPVSFIAG 69

Query: 336 EILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           E +  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   PR
Sbjct: 70  ETVIQQGDEGDNFYVIDQGEMDVYVNNEW-ATSVGEGGSFGELALIYGTPR 119

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 62.0 bits (151), Expect = 1e-11
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
           V  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   P
Sbjct: 72  VIQQGDEGDNFYVIDQGEMDVYVNNEW-ATSVGEGGSFGELALIYGTP 118

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score = 90.1 bits (224), Expect = 3e-21
 Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 6/113 (5%)

Query: 277 EKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGE 336
           ++EE++ E +I  P  +T +   ++ E    +    +L      ++    MFE   ++GE
Sbjct: 14  DEEEDDAESRIIHP--KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDA-MFEKLVKEGE 70

Query: 337 ILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPR 386
            +  QGD+G ++Y+I +G+ D+ +   G   CV +      FG+LAL+ N PR
Sbjct: 71  HVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPR 123

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score = 62.0 bits (151), Expect = 2e-11
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAP 440
             V  QGD+G ++Y+I +G+ D+ +   G   CV +      FG+LAL+ N P
Sbjct: 70  EHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTP 122

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 293 RTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIII 352
           ++ +  + I E +L    + +L  S  +E+    M+     K   +  +GD G   Y++ 
Sbjct: 13  KSPQSKDLIKEAILDNDFMKNLELSQIQEIVDC-MYPVEYGKDSCIIKEGDVGSLVYVME 71

Query: 353 QGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
            G V+V   G   + ++  G+ FG+LA++ N  R
Sbjct: 72  DGKVEVTKEGV-KLCTMGPGKVFGELAILYNCTR 104

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
           S +  +GD G   Y++  G V+V   G   + ++  G+ FG+LA++ N  
Sbjct: 55  SCIIKEGDVGSLVYVMEDGKVEVTKEGV-KLCTMGPGKVFGELAILYNCT 103

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 77.7 bits (191), Expect = 8e-16
 Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 2/108 (1%)

Query: 279 EEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEIL 338
            E     Q  +   ++    + I E +L    + +L  S  +E+    M+     K   +
Sbjct: 15  IEGRGSMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDC-MYPVEYGKDSCI 73

Query: 339 FHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
             +GD G   Y++  G V+V   G   + ++  G+ FG+LA++ N  R
Sbjct: 74  IKEGDVGSLVYVMEDGKVEVTKEGV-KLCTMGPGKVFGELAILYNCTR 120

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG 362
           E L  +     L   +  +LA V+    +   GE +  QG  G +++II +G V+V    
Sbjct: 157 EFLKSVPTFQSLPEEILSKLADVLEETHYE-NGEYIIRQGARGDTFFIISKGKVNVTRED 215

Query: 363 KG-----CVTSLYAGEDFGKLALVNNAPR 386
                   + +L  G+ FG+ AL     R
Sbjct: 216 SPNEDPVFLRTLGKGDWFGEKALQGEDVR 244

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
           S +  +GD G   Y++  G V+V   G   + ++  G+ FG+LA++ N  
Sbjct: 71  SCIIKEGDVGSLVYVMEDGKVEVTKEGV-KLCTMGPGKVFGELAILYNCT 119

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 47.6 bits (113), Expect = 7e-06
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKG-----CVTSLYAGEDFGKLALVNNAP 440
           +  QG  G +++II +G V+V            + +L  G+ FG+ AL     
Sbjct: 191 IIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDV 243

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 75.6 bits (186), Expect = 2e-15
 Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 2/89 (2%)

Query: 298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVD 357
           L+++ + + +    + L +  +R +    + E    KG  +  QGD+G  +Y++ +G+VD
Sbjct: 2   LQRLEKSIRNNFLFNKLDSDSKRLVINC-LEEKSVPKGATIIKQGDQGDYFYVVEKGTVD 60

Query: 358 VVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
             +     V S   G  FG+LAL+ N+PR
Sbjct: 61  FYVNDN-KVNSSGPGSSFGELALMYNSPR 88

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 69.1 bits (169), Expect = 3e-13
 Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG 364
           L  +  L  L+   R +LA   +     + GE +  +GD+G+++Y+I  G+VDV   G+G
Sbjct: 127 LKSMPVLKSLTTYDRAKLADA-LDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQG 185

Query: 365 CVTSLYAGEDFGKLALVNNAPR 386
            +  L   + FG++AL+N+ PR
Sbjct: 186 VINKLKDHDYFGEVALLNDLPR 207

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 392 MVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
            +  QGD+G  +Y++ +G+VD  +     V S   G  FG+LAL+ N+P
Sbjct: 40  TIIKQGDQGDYFYVVEKGTVDFYVNDN-KVNSSGPGSSFGELALMYNSP 87

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 18/48 (37%), Positives = 33/48 (68%)

Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
           +  +GD+G+++Y+I  G+VDV   G+G +  L   + FG++AL+N+ P
Sbjct: 159 IIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLP 206

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 76.7 bits (188), Expect = 5e-15
 Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%)

Query: 275 EEEKEEEEEERQIGKPL-DRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPR 333
           E    +EEE+    + +  +T +   ++ E    +    +L      ++    MFE   +
Sbjct: 116 EAYNPDEEEDDAESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDA-MFEKLVK 174

Query: 334 KGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAPR 386
           +GE +  QGD+G ++Y+I +G+ D+ +   G   CV +      FG+LAL+ N P+
Sbjct: 175 EGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPK 230

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 60.9 bits (147), Expect = 6e-10
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 11/103 (10%)

Query: 294 TSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQ 353
            ++  +     +  L  L  L  S R ++  V+  + +   GE +  QGD   S++I+  
Sbjct: 258 NAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYN-DGEQIIAQGDLADSFFIVES 316

Query: 354 GSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNAPR 386
           G V + +  KG           +   + G+ FG+LALV N PR
Sbjct: 317 GEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPR 359

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALVNNAP 440
           V  QGD+G ++Y+I +G+ D+ +   G   CV +      FG+LAL+ N P
Sbjct: 179 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTP 229

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 46.3 bits (109), Expect = 3e-05
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKGC----------VTSLYAGEDFGKLALVNNAP 440
             +  QGD   S++I+  G V + +  KG           +   + G+ FG+LALV N P
Sbjct: 299 EQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKP 358

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 76.3 bits (187), Expect = 7e-15
 Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 276 EEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKG 335
           E   EE+    + K + +  + +  + + +       HL ++ R ++    MF      G
Sbjct: 103 EVYTEEDAVSYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDA-MFPVTHIAG 161

Query: 336 EILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           E +  QG+EG ++Y++ QG VDV + G+  VT++  G  FG+LAL+   PR
Sbjct: 162 ETVIQQGNEGDNFYVVDQGEVDVYVNGE-WVTNISEGGSFGELALIYGTPR 211

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 61.7 bits (149), Expect = 3e-10
 Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 6/87 (6%)

Query: 305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG 364
           L  +  L  L    R  +A  +        GE +  QG+ G  +YII +G+  V+     
Sbjct: 250 LSKVSILESLEKWERLTVADALEPVQFE-DGEKIVVQGEPGDDFYIITEGTASVLQRRSP 308

Query: 365 -----CVTSLYAGEDFGKLALVNNAPR 386
                 V  L   + FG++AL+ N PR
Sbjct: 309 NEEYVEVGRLGPSDYFGEIALLLNRPR 335

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 392 MVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
            V  QG+EG ++Y++ QG VDV + G+  VT++  G  FG+LAL+   P
Sbjct: 163 TVIQQGNEGDNFYVVDQGEVDVYVNGE-WVTNISEGGSFGELALIYGTP 210

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 47.0 bits (111), Expect = 1e-05
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKG-----CVTSLYAGEDFGKLALVNNAP 440
           +  QG+ G  +YII +G+  V+           V  L   + FG++AL+ N P
Sbjct: 282 IVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRP 334

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 74.3 bits (182), Expect = 1e-14
 Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 2/111 (1%)

Query: 276 EEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKG 335
           E   EE+    + K + +  + +  + + +       HL ++ R ++    MF      G
Sbjct: 12  EVYTEEDAASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDA-MFPVSFIAG 70

Query: 336 EILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           E +  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   PR
Sbjct: 71  ETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPR 120

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 60.8 bits (147), Expect = 3e-10
 Identities = 26/102 (25%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 291 LDRTSEDLEQIYEELLHLKP-LHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWY 349
           L  ++    ++YEE L     L  L    R  +A   +       G+ +  QG+ G  ++
Sbjct: 144 LMGSTLRKRKMYEEFLSKVSILESLDKWERLTVADA-LEPVQFEDGQKIVVQGEPGDEFF 202

Query: 350 IIIQGSVDVVIYGKGC-----VTSLYAGEDFGKLALVNNAPR 386
           II++GS  V+           V  L   + FG++AL+ N P+
Sbjct: 203 IILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPK 244

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 391 SMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPS 441
             V  QGDEG ++Y+I QG +DV +  +   TS+  G  FG+LAL+   P 
Sbjct: 71  ETVIQQGDEGDNFYVIDQGEMDVYVNNE-WATSVGEGGSFGELALIYGTPR 120

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 44.6 bits (105), Expect = 6e-05
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGC-----VTSLYAGEDFGKLALVNNAP 440
           +  QG+ G  ++II++GS  V+           V  L   + FG++AL+ N P
Sbjct: 191 IVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRP 243

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 63.6 bits (155), Expect = 8e-12
 Identities = 25/124 (20%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 270 IEDKEEEEKEEEEEERQIGKPLDRTS---EDLEQIYEELLHLKPLHHLSNSVRRELAGVV 326
            +        E    + +   L       +  E+I E +  +K     SN   R L   +
Sbjct: 3   SDKIHHHHHHENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYM 62

Query: 327 MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVN 382
              A P +   L  +GD G    +I+ G V+V+          +  + AG   G++++++
Sbjct: 63  QCYAAP-RDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMID 121

Query: 383 NAPR 386
             PR
Sbjct: 122 GMPR 125

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 392 MVFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAP 440
            +  +GD G    +I+ G V+V+          +  + AG   G++++++  P
Sbjct: 72  QLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMP 124

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 65.1 bits (158), Expect = 2e-11
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 4/99 (4%)

Query: 291 LDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYI 350
           +D  +E      E+L  +             LA   +       G++L  QG+   S+ +
Sbjct: 1   MDGIAELTGARVEDLAGMDVFQGCPAEGLVSLAAS-VQPLRAAAGQVLLRQGEPAVSFLL 59

Query: 351 IIQGSVDVVIY---GKGCVTSLYAGEDFGKLALVNNAPR 386
           I  GS +V      G   +     G   G++AL+ ++PR
Sbjct: 60  ISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPR 98

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 47.3 bits (112), Expect = 8e-06
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 393 VFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLYAGEDFGKLALVNNAP 440
           +  QG+   S+ +I  GS +V      G   +     G   G++AL+ ++P
Sbjct: 47  LLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSP 97

>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 Length = 105

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 125 TETIPMERIYYSLYSGG-----------RTIARRCASGSELVDWLMSLAPSLAVSRQITT 173
           T    M  I   +               +        G+++VDWL +        R+   
Sbjct: 16  TVKSDMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYTHV-EGFKERREAR 74

Query: 174 GMWQALLEEGVIYHVNGEQAFRDKCILYNF 203
               ++L+ G + H   +  F ++C  Y F
Sbjct: 75  KYASSMLKHGFLRHTVNKITFSEQC-YYVF 103

>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 Length = 105

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 24  TRVVHYTTTLQSSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVD 83
           T  V     L+ +P    +    ++R + L D    +RDR     +        G+++VD
Sbjct: 1   TSSVPGAPQLEEAPLTVKSDMSAIVRVMQLPDSGLEIRDRM--WLKITIANAVIGADVVD 58

Query: 84  WLMSLAPSLAVSRQITTGMWQALLEEGVIYH 114
           WL +        R+       ++L+ G + H
Sbjct: 59  WLYTHV-EGFKERREARKYASSMLKHGFLRH 88

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)

Query: 311 LHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLY 370
              L  +V  E+   +     P  G ++   G+ G   + +++GSV V          L 
Sbjct: 19  FQKLGPAVLVEIVRALRARTVPA-GAVICRIGEPGDRMFFVVEGSVSVA---TPNPVELG 74

Query: 371 AGEDFGKLALVNNAPR 386
            G  FG++AL++  PR
Sbjct: 75  PGAFFGEMALISGEPR 90

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 392 MVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAP 440
           ++   G+ G   + +++GSV V          L  G  FG++AL++  P
Sbjct: 44  VICRIGEPGDRMFFVVEGSVSVA---TPNPVELGPGAFFGEMALISGEP 89

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.1 bits (155), Expect = 1e-10
 Identities = 83/603 (13%), Positives = 171/603 (28%), Gaps = 163/603 (27%)

Query: 206 DKEGSSSQATAQDIAEAEEHLEEALLA--LARRAPDAILRYILRKQLKKLQNRYLPREYM 263
           D E    Q   +DI       E+A +     +   D     + ++++  +          
Sbjct: 8   DFETGEHQYQYKDILS---VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 264 LHLEREIEDKEEEEKEE-----------------EEEERQIGKPLDRTSEDLEQIYEELL 306
           L L   +  K+EE  ++                 + E+RQ         E  +++Y +  
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124

Query: 307 HLKPLH----HLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYII-------IQGS 355
                +         +R+ L      E  P K  ++      GK+W  +       +Q  
Sbjct: 125 VFAKYNVSRLQPYLKLRQAL-----LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 356 VDVVIY----GKGCVT---------SLYAGEDFGKLALVNNAPRLIITSMVFHQGDEGKS 402
           +D  I+       C +          L    D    +  +++  + +     H       
Sbjct: 180 MDFKIFWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---IHSIQAELR 235

Query: 403 WYIIIQGSV-------DV----VI--YGKGC---VTSLYA-------GEDFGKLALVNNA 439
             +  +          +V        +   C   +T+ +              ++L +++
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 440 PSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVIT 499
            +         +  Y      D+  PR      P R   I  ++   L  +     W   
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDL--PREVLTTNPRRLSIIAESIRDGLATW---DNW--- 347

Query: 500 EILLVTSLNKRVQI--LRKMIKLAAYC---KEYRNINALFAVLMGLSNVAVSRLSLTW-- 552
                    K V    L  +I+ +       EYR +    +V    +++    LSL W  
Sbjct: 348 ---------KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

Query: 553 ----------DKLPSKS-------KKTYT------ELEALIDPSKN-HR----AYRQAVS 584
                     +KL   S       + T +      EL+  ++     HR     Y    +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 585 KLQSPVIP-------------------------FMPLLLKDLAFTHDGNKTVVDGLVNFE 619
                +IP                            ++  D  F     K   D    + 
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL--EQKIRHDST-AWN 515

Query: 620 KMHMFAQTLRTLRYCRTRHLDHDKT---VVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLD 676
                  TL+ L++ +    D+D     +V+ +++F  +    + L   +Y     + L 
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--LPKIEENLICSKYTDLLRIALM 573

Query: 677 PPT 679
              
Sbjct: 574 AED 576

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 4e-07
 Identities = 44/282 (15%), Positives = 77/282 (27%), Gaps = 89/282 (31%)

Query: 491 NEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEY----RNI--NALFAVLMGLSNVA 544
            E QY               + +          CK+     ++I        ++   + A
Sbjct: 12  GEHQY----------QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD-A 60

Query: 545 VSRLSLTWDKLPSKSKKTYTEL--EAL---------------IDPSKNHRAYRQAVSKLQ 587
           VS     +  L SK ++   +   E L                 PS   R Y +   +L 
Sbjct: 61  VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 588 SPVIPFMPL----------LLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLR-------- 629
           +    F             L + L         ++DG++   K  +              
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 630 -------TLRYCRT------------RHLDHDKTV-VDGLVNFE-KMHMFAQTLRTL--- 665
                   L+ C +              +D + T   D   N + ++H     LR L   
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 666 -RYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQ-RIL-TS 704
             Y     LVL          V++      A +   +IL T+
Sbjct: 241 KPYENCL-LVLL--------NVQN-AKAWNAFNLSCKILLTT 272

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 1e-05
 Identities = 54/386 (13%), Positives = 110/386 (28%), Gaps = 104/386 (26%)

Query: 381 VNNAPRLIITSM----VFHQGDEGKSWYIII-----QGSVDVVIYGKGCVTSLYAGEDF- 430
           V + P+ I++      +    D       +      +    V  + +  +   Y    F 
Sbjct: 38  VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KFL 94

Query: 431 -GKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRR 489
              +      PS    MY+EQ    +       K          +R Q     L   L  
Sbjct: 95  MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-------SRLQPYL-KLRQALLE 146

Query: 490 FNEIQYWVI--------TEILLVTSLNKRVQILRKM------IKLAAYCKEYRNINALFA 535
               +  +I        T + L   L+ +VQ   KM      + L            +  
Sbjct: 147 LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ--CKMDFKIFWLNLKNCNSP----ETVLE 200

Query: 536 VLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMP 595
           +L  L      ++   W      S      + ++    +     +   + L         
Sbjct: 201 MLQKLL----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--------- 247

Query: 596 LLLKDL-------AF---------THDGNKTVVD-----------------GLVNFEKMH 622
           L+L ++       AF         T    K V D                  L   E   
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 623 MFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLR--TLRYCRTRHLVLDPPTP 680
           +  + L     CR + L  +    +       + + A+++R     +   +H+  D    
Sbjct: 306 LLLKYLD----CRPQDLPREVLTTNPRR----LSIIAESIRDGLATWDNWKHVNCD---- 353

Query: 681 KCESEVKSYVSCLRAMDNQRILTSMS 706
           K  + ++S ++ L   + +++   +S
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLS 379

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 3e-04
 Identities = 89/638 (13%), Positives = 187/638 (29%), Gaps = 213/638 (33%)

Query: 47  VLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVD--WLMS------LAPSLA----- 93
           V  TL L     TL  ++      + ++       ++  +LMS        PS+      
Sbjct: 61  VSGTLRLFW---TLLSKQEE----MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113

Query: 94  -----------------VSR-----QITTGMWQALLEEGVIYHGKISCFFFSETETIPME 131
                            VSR     ++   + +    + V+  G +              
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS------------ 161

Query: 132 RIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGE 191
                    G+T                 +A  + +S ++   M      +  I+ +N +
Sbjct: 162 ---------GKT----------------WVALDVCLSYKVQCKM------DFKIFWLNLK 190

Query: 192 QAFRDKCILYNFWQ-----DKEGSSSQATAQDIAEAEEHLEEAL--LALARRAPDAILRY 244
                + +L    +     D   +S    + +I      ++  L  L  ++   + +L  
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-- 248

Query: 245 ILR-----KQLKK--LQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSED 297
           +L      K      L  + L    +    +++ D                  L  T ++
Sbjct: 249 VLLNVQNAKAWNAFNLSCKIL----LTTRFKQVTDFLSAATTTHISLDHHSMTL--TPDE 302

Query: 298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRK----GEILFHQGDEGKSWYIIIQ 353
           ++ +  + L  +P       + RE+        +PR+     E +        +W  +  
Sbjct: 303 VKSLLLKYLDCRP-----QDLPREVLTT-----NPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 354 GSVDVVIYGKGCVTSLYAGED---FGKLA-LVNNAPRLIITSMVFHQGDEGKSWYIIIQG 409
             +  +I  +  +  L   E    F +L+    +A    I +++         W+ +I+ 
Sbjct: 353 DKLTTII--ESSLNVLEPAEYRKMFDRLSVFPPSAH---IPTILL-----SLIWFDVIKS 402

Query: 410 SVDVVIYGKGCVTSLYAGEDFGKLALVN---NAPSYQLH-MYLEQMAVYFTTTAPDI--- 462
            V VV+                K +LV       +  +  +YLE           +    
Sbjct: 403 DVMVVV------------NKLHKYSLVEKQPKESTISIPSIYLE-----LKVKLENEYAL 445

Query: 463 --------KGPRRYKFRG--PNR-----FQQI-----TANLDVFLRRFNEIQY----WVI 498
                     P+ +      P       +  I            +  F  + +    ++ 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLE 504

Query: 499 TEILLV-TSLNKRVQILRKMIKLAAYCKEY---------RNINALFAVLMGLSNVAVSRL 548
            +I    T+ N    IL  + +L  Y K Y         R +NA+   L  +    +   
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLPKIEENLI--- 560

Query: 549 SLTWDKLPSKSKKTYTEL--EALIDPSKN--HRAYRQA 582
                     SK  YT+L   AL+   +     A++Q 
Sbjct: 561 ---------CSK--YTDLLRIALMAEDEAIFEEAHKQV 587

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG 362
           E L   +    L++   +++A +   E     G ++F +  +  +  ++++G V++    
Sbjct: 6   ERLRVYRFFASLTDEQLKDIALI-SEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSN 64

Query: 363 KGC-------VTSLYAGEDFGKLALVNNAPR 386
            G        V S+  G  FG  +L+     
Sbjct: 65  GGAGSAANSTVCSVVPGAIFGVSSLIKPYHY 95

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 7/56 (12%)

Query: 392 MVFHQGDEGKSWYIIIQGSVDVVIYGKGC-------VTSLYAGEDFGKLALVNNAP 440
           ++F +  +  +  ++++G V++     G        V S+  G  FG  +L+    
Sbjct: 39  VIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYH 94

>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 8/66 (12%)

Query: 146 RRCASGSELVDWLMSLAPSL-----AVSRQITTGMWQALLEEGVIYHVNGE---QAFRDK 197
             C +  E VDWL  L  +       V+RQ T  + +  L+  VI  + G    +   D 
Sbjct: 38  GNCFTAGEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKFLKNHVIEDIKGRWGSENVDDN 97

Query: 198 CILYNF 203
             L+ F
Sbjct: 98  NQLFRF 103

>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 105

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 60  LRDRKTSGGRTIARRCASGSELVDWLMSLAPSL-----AVSRQITTGMWQALLEEGVIYH 114
           LR  +          C +  E VDWL  L  +       V+RQ T  + +  L+  VI  
Sbjct: 27  LRKHR--QHFKKYGNCFTAGEAVDWLYDLLRNNSNFGPEVTRQQTIQLLRKFLKNHVIED 84

Query: 115 GKISC---FFFSE 124
            K           
Sbjct: 85  IKGRWGSENVDDN 97

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 57.7 bits (140), Expect = 4e-10
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 6/95 (6%)

Query: 297 DLEQIYEELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGS 355
           + ++++++LL    L   LS    +EL           KG  +F QG+   ++Y +I G 
Sbjct: 5   EFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLD-KGAYVFRQGEPAHAFYYLISGC 63

Query: 356 VDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPR 386
           V +      G+  +         F +  +  + P 
Sbjct: 64  VKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPN 98

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 392 MVFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPSY 442
            VF QG+   ++Y +I G V +      G+  +         F +  +  + P+Y
Sbjct: 45  YVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNY 99

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 56.9 bits (138), Expect = 9e-10
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 303 EELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY 361
           +++L   PL   L +    EL   +       +G+ LFH+GD G   Y++ +G V +   
Sbjct: 4   DDVLRRNPLFAALDDEQSAELRASMSEVTLA-RGDTLFHEGDPGDRLYVVTEGKVKLHRT 62

Query: 362 GKG----CVTSLYAGEDFGKLALVNNAPR 386
                   +  +   E  G+L+L +  PR
Sbjct: 63  SPDGRENMLAVVGPSELIGELSLFDPGPR 91

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 392 MVFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNAP 440
            +FH+GD G   Y++ +G V +           +  +   E  G+L+L +  P
Sbjct: 38  TLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGP 90

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 53.5 bits (129), Expect = 5e-08
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 5/115 (4%)

Query: 276 EEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKG 335
           +E    + ERQ     D  ++D ++   ++  +      ++              +P   
Sbjct: 19  KETAAAKFERQHMDSPDLGTDDDDKAMADIGSMVLGKPQTDPTLEWFLSHCHIHKYP-SK 77

Query: 336 EILFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPR 386
             L HQG++ ++ Y I++GSV V+I    GK  + S    G+  G+L L      
Sbjct: 78  STLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQE 132

>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31 Length = 120

 Score = 50.5 bits (120), Expect = 8e-08
 Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 15/95 (15%)

Query: 127 TIPMERIYYSLYSGGRTIA-----------RRCASGSELVDWLMSLAPSLAVSRQITTGM 175
           +  + RI   ++     I            ++   GS LVDWL+S   + A SR     +
Sbjct: 5   SSGLHRIVDKMHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISS--NFAASRLEAVTL 62

Query: 176 WQALLEEGVIYHVNGE--QAFRDKCILYNFWQDKE 208
              L+EE  +  V      A R   +   F  D  
Sbjct: 63  ASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDST 97

>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31 Length = 120

 Score = 47.8 bits (113), Expect = 8e-07
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 53  LNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVI 112
           ++D S  +R        +  ++   GS LVDWL+S   + A SR     +   L+EE  +
Sbjct: 15  MHDTSTGIRPSPNMEQGSTYKKTFLGSSLVDWLISS--NFAASRLEAVTLASMLMEENFL 72

Query: 113 YH 114
             
Sbjct: 73  RP 74

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 52.6 bits (127), Expect = 8e-08
 Identities = 21/88 (23%), Positives = 37/88 (42%), Gaps = 6/88 (6%)

Query: 304 ELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY- 361
           + L   PL  ++     RE   VV         E++  Q  EG++ +++  G V V    
Sbjct: 6   DDLKRSPLFQNVPEDAMREALKVVTERNFQ-PDELVVEQDAEGEALHLVTTGVVRVSRVS 64

Query: 362 --GKGCVTS-LYAGEDFGKLALVNNAPR 386
             G+  V   +YA    G+ A++ +  R
Sbjct: 65  LGGRERVLGDIYAPGVVGETAVLAHQER 92

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 14/108 (12%), Positives = 32/108 (29%), Gaps = 5/108 (4%)

Query: 288 GKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHP-RKGEILFHQGDEGK 346
              +      +E +++ LL L     L +     +   V       + GE +   G+   
Sbjct: 3   SDKIHHHHHHMETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCT 62

Query: 347 SWYIIIQGSVDVVIY---GKGCVTS-LYAGEDFGKLALVNNAPRLIIT 390
               +++G + +V         V   + A       +L         +
Sbjct: 63  QLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASS 110

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 297 DLEQIYEELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGS 355
           + ++++++LL    L   LS    +EL           KG  +F QG+   ++Y +I G 
Sbjct: 2   EFQRVHQQLLQSHHLFEPLSPVQLQELLASSDLVNLD-KGAYVFRQGEPAHAFYYLISGC 60

Query: 356 VDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPR 386
           V +      G+  +  +      F +  +  + P 
Sbjct: 61  VKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPN 95

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 303 EELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY 361
           +E+L    +   +  S    L   +     P +G  +F +G+ G   YIII G V +   
Sbjct: 5   DEILARAGIFQGVEPSAIAALTKQLQPVDFP-RGHTVFAEGEPGDRLYIIISGKVKIGRR 63

Query: 362 ---GKGCVTSLY-AGEDFGKLALVNNAPR 386
              G+  + ++    + FG+L++ +  PR
Sbjct: 64  APDGRENLLTIMGPSDMFGELSIFDPGPR 92

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 31/156 (19%), Positives = 59/156 (37%), Gaps = 25/156 (16%)

Query: 239 DAILRYILRKQL-KKLQNRYLPREYMLHL-EREIEDKEEEEKEEEEEERQIGKPLDRTSE 296
             +  Y+  ++L   L+N+    +Y  +    ++ D           ER I       SE
Sbjct: 15  KQVEEYMQYRKLPSHLRNKI--LDYYEYRYRGKMFD-----------ERHI---FREVSE 58

Query: 297 DLEQ-----IYEELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYI 350
            + Q        +L+   P      ++    +  ++ FE      + +  +G  G   + 
Sbjct: 59  SIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQ-PADYVIQEGTFGDRMFF 117

Query: 351 IIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           I QG VD+++      TSL  G  FG++ L+    R
Sbjct: 118 IQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRERR 153

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPS 441
           V  +G  G   + I QG VD+++      TSL  G  FG++ L+     
Sbjct: 105 VIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRERR 153

>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A Length = 109

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 13/95 (13%)

Query: 127 TIPMERIYYSLYSGGRTIARR-----------CASGSELVDWLMSLAPSLAVSRQITTGM 175
           +  +  +Y S+    + I              C +GS ++DWL+S    L  +RQ    +
Sbjct: 5   SSGLGALYLSMKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVS--NKLVRNRQEGLMI 62

Query: 176 WQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEGS 210
             +LL EG +             I  N + D   +
Sbjct: 63  SASLLSEGYLQPAGDLSKNAADGIAENPFLDSPDA 97

>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A Length = 109

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 53  LNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVI 112
           + D    +++      + +   C +GS ++DWL+S    L  +RQ    +  +LL EG +
Sbjct: 15  MKDPEKGIKELNLEKDKKVFNHCLTGSGVIDWLVS--NKLVRNRQEGLMISASLLSEGYL 72

Query: 113 YH-GKISCFFFSETETIPMERIYYSLY 138
              G +S          P      + Y
Sbjct: 73  QPAGDLSKNAADGIAENPFLDSPDAFY 99

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 32/156 (20%), Positives = 57/156 (36%), Gaps = 26/156 (16%)

Query: 239 DAILRYILRKQL-KKLQNRYLPREYMLHL-EREIEDKEEEEKEEEEEERQIGKPLDRTSE 296
             + +Y+   +L    + +    +Y  H  + ++ D           E  I   L   + 
Sbjct: 16  KQVEQYMSFHKLPADFRQKI--HDYYEHRYQGKMFD-----------EDSI---LGELNG 59

Query: 297 DL-EQI----YEELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYI 350
            L E+I      +L+   PL  +   +    +   + FE     G+ +  +G  GK  Y 
Sbjct: 60  PLREKIVNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQ-PGDYIIREGTIGKKMYF 118

Query: 351 IIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           I  G V V+  G      L  G  FG++ L+    R
Sbjct: 119 IQHGVVSVLTKG-NKEMKLSDGSYFGEICLLTRGRR 153

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPS 441
           +  +G  GK  Y I  G V V+  G      L  G  FG++ L+     
Sbjct: 106 IIREGTIGKKMYFIQHGVVSVLTKG-NKEMKLSDGSYFGEICLLTRGRR 153

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 5/80 (6%)

Query: 311 LHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY---GKGCVT 367
            H L+               +P +G+ +F+QGD G++ Y++  G V +      G+    
Sbjct: 7   FHGLAPEEVDLALSYFQRRLYP-QGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTL 65

Query: 368 SLY-AGEDFGKLALVNNAPR 386
           +L   GE FG+++L++   R
Sbjct: 66  ALLGPGELFGEMSLLDEGER 85

>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31 Length = 127

 Score = 47.8 bits (113), Expect = 9e-07
 Identities = 23/115 (20%), Positives = 37/115 (32%), Gaps = 24/115 (20%)

Query: 126 ETIPMERIYYSLYSGGRTIA-----------RRCASGSELVDWLMSLAPSLAVSRQITTG 174
           ETI +  +Y S+    + I              C +G+ ++DWL+S       +RQ    
Sbjct: 14  ETIDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVS--NQSVRNRQEGLM 71

Query: 175 MWQALLEEGVIYHV----------NGEQAFRD-KCILYNFWQDKEGSSSQATAQD 218
           +  +LL EG +               E  F D     Y F          +    
Sbjct: 72  IASSLLNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDSGFFCEENSGPSS 126

>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31 Length = 127

 Score = 45.1 bits (106), Expect = 7e-06
 Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 53  LNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVI 112
           + D    +++      + I   C +G+ ++DWL+S       +RQ    +  +LL EG +
Sbjct: 25  MKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVS--NQSVRNRQEGLMIASSLLNEGYL 82

Query: 113 YH-GKISCFFFSETETIPMERIYYSLY 138
              G +S      T   P      + Y
Sbjct: 83  QPAGDMSKSAVDGTAENPFLDNPDAFY 109

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 6/84 (7%)

Query: 308 LKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY---GK 363
           L+ +   L+   R  L   +      +K   +F +GD   + + + +G + ++     G+
Sbjct: 14  LRDVWSLLNEEERELLDKEIQ-PFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGR 72

Query: 364 GCVTSLY-AGEDFGKLALVNNAPR 386
             ++ +   G+ FG          
Sbjct: 73  FHISRIVKPGQFFGMRPYFAEETC 96

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 6/89 (6%)

Query: 303 EELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY 361
           + +     L   L       L    ++ ++  +GE LF Q ++ ++ +++I G V +   
Sbjct: 10  KAIARNSLLIRSLPEQHVDALLSQAVWRSYD-RGETLFLQEEKAQAIHVVIDGWVKLFRM 68

Query: 362 ---GKGCVTSLY-AGEDFGKLALVNNAPR 386
              G   V S++  GE FG+   + N P 
Sbjct: 69  TPTGSEAVVSVFTRGESFGEAVALRNTPY 97

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 45.6 bits (108), Expect = 6e-06
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 7/83 (8%)

Query: 310 PL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGC--- 365
           PL  ++   +   +   +       +   L  +GD       II+G ++ V    G    
Sbjct: 12  PLFENMDERLLDAICERLKPCLFT-EKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGF 70

Query: 366 --VTSLYAGEDFGKLALVNNAPR 386
              + L  G+  G   L      
Sbjct: 71  YNRSLLKEGDFCGDELLTWALDP 93

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 333 RKGEILFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPR 386
                + + GD  ++ + II+GSV ++I    G+  +     +G+ FG+L L      
Sbjct: 19  TAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGS 76

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 313 HLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSL 369
             ++              +P     L HQG++ ++ Y I++GSV V+I    GK  + S 
Sbjct: 6   PQTDPTLEWFLSHCHIHKYP-SKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSY 64

Query: 370 Y-AGEDFGKLALVNNAPR 386
              G+  G+L L      
Sbjct: 65  LNQGDFIGELGLFEEGQE 82

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 12/146 (8%)

Query: 239 DAILRYILRKQL-KKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSED 297
             +  +I   +L K L  R    E                   +  E     P +  ++ 
Sbjct: 19  KDLKDFIRVHRLPKALAQRM--LECFQT-------TWSVNNGIDVSELLKDFPDELRADI 69

Query: 298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVD 357
              + +ELL L      S    R L+ ++        GE L  QGD  ++ Y +  GS++
Sbjct: 70  AMHLNKELLQLPLFESASRGCLRSLSLIIKTSFCA-PGEFLIRQGDALQAIYFVCSGSME 128

Query: 358 VVIYGKGCVTSLYAGEDFGKLALVNN 383
           V+      +  L  G+  G  +L   
Sbjct: 129 VL-KDNTVLAILGKGDLIGSDSLTKE 153

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY--- 361
              + P +       R    + +      KG  +   G+E  S   +++G + + I    
Sbjct: 11  CGAIIPDNFFPIEKLRNYTQMGLIRDFA-KGSAVIMPGEEITSMIFLVEGKIKLDIIFED 69

Query: 362 GKGCVTSLY-AGEDFGKLAL 380
           G   +          GKL  
Sbjct: 70  GSEKLLYYAGGNSLIGKLYP 89

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 6/89 (6%)

Query: 303 EELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY 361
              +        L                +P     +F  GD   + Y +I GSV ++  
Sbjct: 10  TTTVRNATPSLTLDAGTIERFLAHSHRRRYP-TRTDVFRPGDPAGTLYYVISGSVSIIAE 68

Query: 362 ---GKGCVTSLY-AGEDFGKLALVNNAPR 386
               +  V   + +GE  G++ L   +  
Sbjct: 69  EDDDRELVLGYFGSGEFVGEMGLFIESDT 97

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.4 bits (104), Expect = 3e-05
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 37/88 (42%)

Query: 219 IAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLER--EIEDKEEE 276
           IA+A+   +E         P++I     RK           RE     E+   +++ +  
Sbjct: 74  IAQADRLTQE---------PESI-----RKW----------RE-----EQRKRLQELDAA 104

Query: 277 EKEEEEEERQIGKPLDRTSEDLEQIYEE 304
            K  E+E R+  K      +DLE+  + 
Sbjct: 105 SKVMEQEWREKAK------KDLEEWNQR 126

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 333 RKGEILFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPRLI 388
           RKGEI+ HQ D  +   I+++G++        GK          +      + ++ PR  
Sbjct: 28  RKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFP 87

Query: 389 IT 390
           + 
Sbjct: 88  VN 89

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 301 IYEELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVV 359
           +  ++    P     S+   R LA           G++++H G+   S   ++ GS++V+
Sbjct: 24  LNRKVFKEHPAFRLASDGCLRALAMEFQTVHCA-PGDLIYHAGESVDSLCFVVSGSLEVI 82

Query: 360 IYGKGCVTSLYAGEDFGKLALVNNAPR 386
                 V  L  G+ FG +        
Sbjct: 83  QDD-EVVAILGKGDVFGDVFWKEATLA 108

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 4/58 (6%)

Query: 333 RKGEILFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPR 386
            K E++F+Q D  +    +  G   +      G       Y          +      
Sbjct: 24  HKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSV 81

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 10/90 (11%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 304 ELLHLKPL-HHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY- 361
              +  PL + L+ + ++ ++  ++ +    KG I+ +   +     ++  G +   I  
Sbjct: 3   SFENYFPLWNDLNTAQKKLISDNLITQHVK-KGTIIHNGNMDCTGLLLVKSGQLRTYILS 61

Query: 362 --GKGCVTS-LYAGED--FGKLALVNNAPR 386
             G+      L+  +        ++ +   
Sbjct: 62  DEGREITLYRLFDMDMCLLSASCIMRSIQF 91

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 4/73 (5%)

Query: 311 LHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVT 367
            + L +            + H  KG ++     +    ++++ G + V + G+     + 
Sbjct: 8   ANVLLSPDGETFFRGFRSKIHA-KGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLF 66

Query: 368 SLYAGEDFGKLAL 380
            L +G+ F   + 
Sbjct: 67  YLTSGDMFCMHSG 79

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 333 RKGEILFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPR 386
            + E ++ +G+E ++ Y + +G V VV     G+         G+ FG+ AL   A R
Sbjct: 5   ARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEALEGKAYR 62

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 333 RKGEILFHQGDEGKSWYIIIQGSVDVVIY---GKGCVTSLY-AGEDFGKLALVNNAPR 386
            + + +F  GD  +  Y +++G+V +      G+    +L      FG L+L+     
Sbjct: 49  ERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKS 106

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 296 EDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGS 355
            D  + ++ +  +     L  +V  E+    +       G ++   G+ G   + +++GS
Sbjct: 221 GDFVRNWQLVAAVPLFQKLGPAVLVEIV-RALRARTVPAGAVICRIGEPGDRMFFVVEGS 279

Query: 356 VDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           V V          L  G  FG++AL++  PR
Sbjct: 280 VSVATPNP---VELGPGAFFGEMALISGEPR 307

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG 362
             L     L  L++     +      + +  K  IL+    E    +++  G V V +  
Sbjct: 4   MRLTDTNLLEVLNSEEYSGVLKEFREQRYS-KKAILYTPNTERNLVFLVKSGRVRVYLAY 62

Query: 363 KG---CVTSLYAGEDFGKLALVN 382
           +     +  L AG+ F       
Sbjct: 63  EDKEFTLAILEAGDIFCTHTRAF 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	714
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	100.0
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	100.0
2ije_S	240	Guanine nucleotide-releasing protein; rasgrf1, CDC	100.0
3qxl_A	271	RAS-specific guanine nucleotide-releasing factor;	100.0
2ii0_A	490	SOS-1, SON of sevenless homolog 1; signaling prote	100.0
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	100.0
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.89
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.88
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.88
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.87
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.87
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.86
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.86
2ysr_A	105	DEP domain-containing protein 1; structural genomi	99.83
1uhw_A	109	Pleckstrin; three-helix bundle, beta-ARM, riken st	99.8
1v3f_A	120	Pleckstrin 2; three-helix bundle, structural genom	99.8
1fsh_A	105	Dishevelled-1; three-helix bundle, beta-ARM, signa	99.76
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.75
2cso_A	127	Pleckstrin; DEP domain, platelet P47 protein, stru	99.74
3ml6_A	385	Chimeric complex between protein dishevlled2 HOMO	99.57
3t6a_A	333	Breast cancer anti-estrogen resistance protein 3;	99.55
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.5
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.47
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.46
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.45
3t6g_A	331	SH2 domain-containing protein 3C; CDC25-homology d	99.44
2pbi_A	424	Regulator of G-protein signaling 9; helix WRAP, RG	99.39
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.36
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.33
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.33
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.3
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.3
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.3
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.28
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.27
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.25
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.22
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.18
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.17
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.16
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.15
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.14
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.14
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.14
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.13
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.11
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.11
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.09
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.09
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.08
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.03
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.02
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.02
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	98.94
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	98.88
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	98.88
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	98.78
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	98.78
1ft9_A	222	Carbon monoxide oxidation system transcription reg	98.71
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	98.66
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	98.66
3b02_A	195	Transcriptional regulator, CRP family; structural	98.61
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	98.57
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	98.5
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	98.37
3b02_A	195	Transcriptional regulator, CRP family; structural	97.71
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	97.7
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	97.56
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	97.55
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	97.53
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	97.53
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	97.49
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	97.48
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	97.45
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	97.4
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	97.4
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	97.39
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	97.38
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	97.38
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	97.37
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	97.31
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	97.31
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	97.27
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	97.26
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	97.26
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	97.22
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	97.16
2ysr_A	105	DEP domain-containing protein 1; structural genomi	97.16
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	97.15
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	97.14
1uhw_A	109	Pleckstrin; three-helix bundle, beta-ARM, riken st	97.13
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	97.12
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	97.1
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	97.09
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	97.06
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	97.05
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	97.05
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	97.04
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	96.93
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	96.91
1v3f_A	120	Pleckstrin 2; three-helix bundle, structural genom	96.81
2cso_A	127	Pleckstrin; DEP domain, platelet P47 protein, stru	96.79
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	96.77
1fsh_A	105	Dishevelled-1; three-helix bundle, beta-ARM, signa	96.64
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	96.54
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	96.23
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	95.92
1ft9_A	222	Carbon monoxide oxidation system transcription reg	95.54
3ml6_A	385	Chimeric complex between protein dishevlled2 HOMO	94.91
2pbi_A	424	Regulator of G-protein signaling 9; helix WRAP, RG	85.56

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=100.00  E-value=7.1e-74  Score=701.83  Aligned_cols=526  Identities=48%  Similarity=0.840  Sum_probs=449.4

Q ss_pred             cCCcHHHHHHHHHHHHHhhcCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccc
Q psy11552         35 SSPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYH  114 (714)
Q Consensus        35 ~~~~~~~~~~~~~l~~~~~~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~h  114 (714)
                      ..++..+..+|..++.......+..++||+++.  +++++|+.|.++++|+.....+                       
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~e~~d~~~~~~~~-----------------------  239 (999)
T 4f7z_A          185 NVPSEKILRAGKILRIAILSRAPHMIRDRKYHL--KTYRQCCVGTELVDWMIQQTSC-----------------------  239 (999)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHCGGGSEEEEETT--EEEEEEEEHHHHHHHHHHHCSS-----------------------
T ss_pred             cCchhhcccccccccchhccccccccccccccc--cccccccccccccccccccCcc-----------------------
Confidence            346788999999999999888899999999999  9999999999999999998885                       


Q ss_pred             cceeeEeecCCCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccc
Q psy11552        115 GKISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAF  194 (714)
Q Consensus       115 v~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F  194 (714)
                                                                         +.+|.+++.+||.+++.|++.|+..++.|
T Consensus       240 ---------------------------------------------------~~~~~~~~~~~q~~l~~~~~~~~~~~~~~  268 (999)
T 4f7z_A          240 ---------------------------------------------------VHSRTQAVGMWQVLLEDGVLNHVDQERHF  268 (999)
T ss_dssp             ---------------------------------------------------CCCHHHHHHHHHHHHHTTSEEETTCCSSC
T ss_pred             ---------------------------------------------------cccccccchhhhhhccccccccchhcccc
Confidence                                                               69999999999999999999999999999


Q ss_pred             cCcCceeeeccCccCCCCCCchhhhHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHhhccchHHHHHHHHHHhhhhH
Q psy11552        195 RDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQLKKLQNRYLPREYMLHLEREIEDKE  274 (714)
Q Consensus       195 ~d~~~~Yrf~~d~~~~~~~~~~~~~~~~ee~l~e~l~~l~q~~~~~~~r~ilr~~~k~l~~r~l~~~~~~~l~~e~~~~~  274 (714)
                      +|...+|+|..+.......+...+.....+...+....+.+..|++..+.++++.                         
T Consensus       269 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~l~k~-------------------------  323 (999)
T 4f7z_A          269 QDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKP-------------------------  323 (999)
T ss_dssp             CSSSCEEEEGGGGSTTCCCCCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSC-------------------------
T ss_pred             ccchhhhhhhccccccccccccccccchhhhhhhhhhhhcccccchhhhhhhcCC-------------------------
Confidence            9999999999988888888887777778888888889999888887777776664                         


Q ss_pred             HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEe
Q psy11552        275 EEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQG  354 (714)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G  354 (714)
                                     +..++.++++.+.++|.++++|++|+..++++|+.++.++.++++|++|++|||.|++||||++|
T Consensus       324 ---------------~~~rt~ed~e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG  388 (999)
T 4f7z_A          324 ---------------PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKG  388 (999)
T ss_dssp             ---------------GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEES
T ss_pred             ---------------cccccHHHHHHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEee
Confidence                           78889999999999999999999999999999999766677789999999999999999999999


Q ss_pred             EEEEEEeCceEEEEecCCCccchhhhccCCCcceeeec------------------------------------cc----
Q psy11552        355 SVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSM------------------------------------VF----  394 (714)
Q Consensus       355 ~V~V~~~~~~~v~~l~~Gd~FGElaLl~~~pr~atv~A------------------------------------i~----  394 (714)
                      +|+|++.+++.+++|++||+|||+|++++.||+|||+|                                    ++    
T Consensus       389 ~V~V~~~~~~~v~~L~~Gd~FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~e~~~~~~~e~~~~v~v~e~~  468 (999)
T 4f7z_A          389 SVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDVEANTVRLKEHDQDVLVLEKV  468 (999)
T ss_dssp             EEEEEETTTEEEEEEETTCEECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHHHHSEEEEESSSSEEEEEECC
T ss_pred             EEEEEEcCCcceEEecCCCcccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHHHHhhhHhhhcccceeEEEEe
Confidence            99999988889999999999999999999999999998                                    00    


Q ss_pred             ---ccC-----CCCceEEEEEeCeEEEEeec------------------------ceeee------------e-------
Q psy11552        395 ---HQG-----DEGKSWYIIIQGSVDVVIYG------------------------KGCVT------------S-------  423 (714)
Q Consensus       395 ---~~g-----~~~~~~YiI~~G~~~~~~~~------------------------~~~v~------------~-------  423 (714)
                         .+|     ......|+|++|+++++.++                        ++..|            +       
T Consensus       469 ~~~~~~~~~~~~~~~~~~~v~~gT~ekLie~L~~~~~~~~~~~~~~~~f~~~FLlTyr~F~t~~~ll~~Li~r~~~~~~~  548 (999)
T 4f7z_A          469 PAGNRAANQGNSQPQQKYTVMSGTPEKILEHFLETIRLEPSLNEATDSVLNDFVMMHCVFMPNTQLCPALVAHYHAQPSQ  548 (999)
T ss_dssp             -----------------CEEEEECHHHHHHHHHHHCCCCTTSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHCCCSS
T ss_pred             eccccCCCCCCCccceeeEEeecCHHHHHHHHhcccccCcccccchhhHHHHHHHhccccCCcHHHHHHHHHHHcCCCCc
Confidence               001     11245699999998876643                        00000            0       


Q ss_pred             --------------------------ecCCCccch---hhhh--------------------------------------
Q psy11552        424 --------------------------LYAGEDFGK---LALV--------------------------------------  436 (714)
Q Consensus       424 --------------------------l~~gd~fge---~~~L--------------------------------------  436 (714)
                                                .+++|+...   ..+|                                      
T Consensus       549 ~~~~~~~~~~~~~~~rv~~vl~~Wv~~~~~df~~d~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  628 (999)
T 4f7z_A          549 GTEQERMDYALNNKRRVIRLVLQWAAMYGDLLQEDDVAMAFLEEFYVSVSDDARMMAAFKEQLPELEKIVKQISEDAKAP  628 (999)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGCHHHHHHHHHHHHHHHHCSSCCHHHHTHHHHHHHHHHHTTSCSCCC
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHhCCchhccCHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhhhcccccccc
Confidence                                      011221110   0000                                      


Q ss_pred             --------------------------------------------------------------------------------
Q psy11552        437 --------------------------------------------------------------------------------  436 (714)
Q Consensus       437 --------------------------------------------------------------------------------  436 (714)
                                                                                                      
T Consensus       629 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  708 (999)
T 4f7z_A          629 QKKHKVLLQQFNTGDERAQKRQPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEK  708 (999)
T ss_dssp             CEECC-----------CCCCCCCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCSCEEEEEECTTCCE
T ss_pred             ccccchhhhccccccccccccCCCCCccchhhhccccccccccccCCccccHHHHHHhhhhhccCCCcceeeccccCCcc
Confidence                                                                                            


Q ss_pred             ------------------------------------------------cCCchhHHHHHHh--hhheeeeeccccccCCc
Q psy11552        437 ------------------------------------------------NNAPSYQLHMYLE--QMAVYFTTTAPDIKGPR  466 (714)
Q Consensus       437 ------------------------------------------------~~~p~~~~~~~l~--~~~ly~~itv~ei~~p~  466 (714)
                                                                      .+-.+.++|+|||  ++++|+++.+.|+    
T Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~e~A~qlt~~~~~~f~~i~~~e~----  784 (999)
T 4f7z_A          709 VVLKSNDVSVFTTLTINGRLFACPREQFDSLTPLPEQEGPTTGTVGTFELMSSKDLAYQMTTYDWELFNCVHELEL----  784 (999)
T ss_dssp             EECCTTCBCCSTTSCTTCEEEEEEGGGSSSCCCCTTTTCCSSCCHHHHTTSCHHHHHHHHHHHHHHHHHTCCHHHH----
T ss_pred             ccCCccccccccccccccccccccccccccCCCchhhcccccccccchhcCCHHHHHHHHHHHHHHHHcCCCHHHH----
Confidence                                                            0001235899988  5579999999997    


Q ss_pred             eeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhhcCChHHHHHHHHhcCchhhh
Q psy11552        467 RYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVS  546 (714)
Q Consensus       467 ~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~l~Nf~s~~aI~~gL~~~~V~  546 (714)
                      +...|++.+....+||+.+++++||.+++||+++||.++++++|+++|++||+||.+|+++||||+++||++||++++|+
T Consensus       785 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~wv~~~il~~~~~~~R~~~~~~~i~ia~~~~~l~Nf~~~~ai~~~l~~~~i~  864 (999)
T 4f7z_A          785 IYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKIAAHCKEYKNLNSFFAIVMGLSNVAVS  864 (999)
T ss_dssp             HHHHHCHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHTTSHHHH
T ss_pred             HHhHhhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcCCchhh
Confidence            55677777777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccccccchhhchhccccCCCCccCCcccHHHHHHHHH
Q psy11552        547 RLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKDLAFTHDGNKTVVDGLVNFEKMHMFAQ  626 (714)
Q Consensus       547 RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~Dl~~i~egn~~~~~glINf~K~~~i~~  626 (714)
                      ||++||+.||++.++.|++|+.++++++||++||.+++++++|||||||+||+||+|+++|||++++|+|||+|++++++
T Consensus       865 RL~~tw~~~~~~~~~~~~~l~~l~~~~~n~~~yr~~l~~~~~p~iP~~g~~l~dl~~~~~gn~~~~~~linf~k~~~~~~  944 (999)
T 4f7z_A          865 RLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKDMTFTHEGNKTFIDNLVNFEKMRMIAN  944 (999)
T ss_dssp             TCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCCSSCBCCHHHHHHHHHHHHHTSCSBSSSSEEHHHHHHHHH
T ss_pred             hHHHHHHHCCHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCeeceehHHHHHHHHHhccCCCCCCCcCcHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999955


Q ss_pred             HHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC-CCChHHHHHHHhhCCCCCCHHHHHHH
Q psy11552        627 TLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPT-PKCESEVKSYVSCLRAMDNQRILTSM  705 (714)
Q Consensus       627 ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~~~~~~-~~~~~~i~~yi~~~~~~~~~~~L~~l  705 (714)
                      +|.+|                                  +.||+.+|++.+.. .+...+++.|+.++++++|+++||++
T Consensus       945 ~i~~i----------------------------------~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  990 (999)
T 4f7z_A          945 TARTV----------------------------------RYYRSQPFNPDAAQANKNHQDVRSYVRQLNVIDNQRTLSQM  990 (999)
T ss_dssp             HHHHH----------------------------------HHHTSSCCCCSSCC--CCCHHHHHHHHTCCCCCCHHHHHHH
T ss_pred             HHHHH----------------------------------HHHhcCCCCCCccchhhhHHHHHHHHHhCCCCCCHHHHHHH
Confidence            55555                                  45555566655422 24567899999999999999999999


Q ss_pred             HhhcCCCCC
Q psy11552        706 SQKLEPRRS  714 (714)
Q Consensus       706 S~~lEPr~~  714 (714)
                      |+++|||++
T Consensus       991 S~~~EPr~p  999 (999)
T 4f7z_A          991 SHRLEPRRP  999 (999)
T ss_dssp             HHTTSCC--
T ss_pred             HHhcCCCCC
Confidence            999999985

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=100.00  E-value=2.8e-57  Score=530.86  Aligned_cols=234  Identities=56%  Similarity=0.936  Sum_probs=208.2

Q ss_pred             HHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHHHH
Q psy11552        443 QLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKL  520 (714)
Q Consensus       443 ~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~i  520 (714)
                      ++|+|||  ++++|+++.+.|+    +...|++.+....+||+..++++||.+++||+++||.++++++|++++++||+|
T Consensus       458 elA~QLTl~d~~lf~~I~~~E~----l~~~~~~~~~~~~~pni~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI~i  533 (694)
T 3cf6_E          458 DLAYQMTTYDWELFNCVHELEL----IYHTFGRHNFKKTTANLDLFLRRFNEIQFWVVTEVCLCSQLSKRVQLLKKFIKI  533 (694)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHH----HHHHHCGGGTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHH----HHHHhccCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4899998  5579999999997    556677777777899999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccccccchhhc
Q psy11552        521 AAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLKD  600 (714)
Q Consensus       521 A~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L~D  600 (714)
                      |.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|+.++++++||++||.+++++++|||||+|+||+|
T Consensus       534 A~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~p~IPflg~~L~D  613 (694)
T 3cf6_E          534 AAHCKEYKNLNSFFAIVMGLSNVAVSRLALTWEKLPSKFKKFYAEFESLMDPSRNHRAYRLTAAKLEPPLIPFMPLLIKD  613 (694)
T ss_dssp             HHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSCSSCBCCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHhCCcchhhhHHHHHHCCHHHHHHHHHHHHHhCccccHHHHHHHHHhcCCCCcccHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccccCCCCccCCcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC-
Q psy11552        601 LAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDPPT-  679 (714)
Q Consensus       601 l~~i~egn~~~~~glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~~~~~~-  679 (714)
                      |+|+++|||++++|+|||+|++++++++..+..||+.                                  +|++.++. 
T Consensus       614 L~fi~egn~~~~~~lINf~K~r~i~~ii~~i~~~q~~----------------------------------~y~~~~~~~  659 (694)
T 3cf6_E          614 MTFTHEGNKTFIDNLVNFEKMRMIANTARTVRYYRSQ----------------------------------PFNPDAAQA  659 (694)
T ss_dssp             HHHHHHHSCSEETTEEEHHHHHHHHHHHHHHHHHTSS----------------------------------CCC------
T ss_pred             HHHHHcCCCchhccCcCHHHHHHHHHHHHHHHHHhhC----------------------------------CCCcCcccc
Confidence            9999999999999999999999996666666655554                                  44443321 


Q ss_pred             CCChHHHHHHHhhCCCCCCHHHHHHHHhhcCCCCC
Q psy11552        680 PKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRRS  714 (714)
Q Consensus       680 ~~~~~~i~~yi~~~~~~~~~~~L~~lS~~lEPr~~  714 (714)
                      .+..+++++|+.++++++|+++||++|+++|||.+
T Consensus       660 ~~~~~~i~~~l~~l~~~~~e~~l~~lSl~~EPr~~  694 (694)
T 3cf6_E          660 NKNHQDVRSYVRQLNVIDNQRTLSQMSHRLEPRRP  694 (694)
T ss_dssp             ---CHHHHHHHTSCCCCCCHHHHHHHHHHHCC---
T ss_pred             ccchHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCC
Confidence            13367899999999999999999999999999975

>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing FACT specific nucleotide exchange factor; 2.20A {Mus musculus}

Probab=100.00  E-value=3.3e-51  Score=420.52  Aligned_cols=231  Identities=22%  Similarity=0.389  Sum_probs=212.0

Q ss_pred             hhHHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHH
Q psy11552        441 SYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMI  518 (714)
Q Consensus       441 ~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI  518 (714)
                      +.++|+|||  ++++|+++++.|+    +...|++.+....+|++..++++||.+++||+++||.++++++|++++++||
T Consensus         6 p~eiA~QLTl~d~~lf~~I~~~E~----l~~~w~~~~~~~~~p~i~~~i~~fN~ls~wV~~~Il~~~~~~~Ra~~i~~fI   81 (240)
T 2ije_S            6 ALEIAEQLTLLDHLVFKSIPYEEF----FGQGWMKAEKYERTPYIMKTTKHFNHVSNFIASEIIRNEDISARASAIEKWV   81 (240)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGG----GGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHH----hhhHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            346899998  5579999999997    4455777666667999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccccccchh
Q psy11552        519 KLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLL  598 (714)
Q Consensus       519 ~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L  598 (714)
                      +||.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|+.++++++||++||.+++++++|||||+|+||
T Consensus        82 ~iA~~~~~l~Nfns~~aI~~gL~~~~I~RLk~TW~~l~~~~~~~~~~L~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L  161 (240)
T 2ije_S           82 AVADICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDGRFKNLRESLRNCDPPCVPYLGMYL  161 (240)
T ss_dssp             HHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTCCSSCBCCHHHHH
T ss_pred             HHHHHHHhcCCHhHHHHHHHHhccchhhhHHHHHHHhhHHHHHHHHHHHHHHCccchHHHHHHHHHhcCCCccCccchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhccccCCCCcc-CCcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCCCCC
Q psy11552        599 KDLAFTHDGNKTVV-DGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLVLDP  677 (714)
Q Consensus       599 ~Dl~~i~egn~~~~-~glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~~~~  677 (714)
                      +||+|+++|||++. +|+|||+|++++                                  +++++.++.||+.+|++.+
T Consensus       162 ~DL~~i~egnp~~~~~~lINf~K~~~~----------------------------------~~ii~~i~~~q~~~y~~~~  207 (240)
T 2ije_S          162 TDLVFIEEGTPNYTEDGLVNFSKMRMI----------------------------------SHIIREIRQFQQTTYKIDP  207 (240)
T ss_dssp             HHHHHHHHHSCSBCTTSCBCHHHHHHH----------------------------------HHHHHHHHHHHHSCCCCCC
T ss_pred             HHHHHHHhcCCCCCCCCcCcHHHHHHH----------------------------------HHHHHHHHHHhcCCCCCCC
Confidence            99999999999998 899999999999                                  5555556667777888887


Q ss_pred             CCCCChHHHHHHHhhCCCCCCHHHHHHHHhhcCCCCC
Q psy11552        678 PTPKCESEVKSYVSCLRAMDNQRILTSMSQKLEPRRS  714 (714)
Q Consensus       678 ~~~~~~~~i~~yi~~~~~~~~~~~L~~lS~~lEPr~~  714 (714)
                           .+++++|+.+++.+.+++.||++|+++|||.+
T Consensus       208 -----~~~i~~~l~~~~~~~~e~~ly~~Sl~~EPr~~  239 (240)
T 2ije_S          208 -----QPKVIQYLLDESFMLDEESLYESSLLIEPKLP  239 (240)
T ss_dssp             -----CHHHHHHHHCCTTCCCHHHHHHHHHHHSCC--
T ss_pred             -----CHHHHHHHHhCcCCCCHHHHHHHHHHhCCCCC
Confidence                 88999999999878889999999999999975

>3qxl_A RAS-specific guanine nucleotide-releasing factor; CDC25 domain homology, guanine-nucleotide exchange factor, S GTPase RAL subfamily; 2.24A {Homo sapiens}

Probab=100.00  E-value=2.6e-47  Score=397.26  Aligned_cols=230  Identities=23%  Similarity=0.401  Sum_probs=205.2

Q ss_pred             chhHHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHH
Q psy11552        440 PSYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKM  517 (714)
Q Consensus       440 p~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~f  517 (714)
                      ++.++|+|||  ++++|+++++.|+    +...|++......+||+.+++++||.+++||+++||.++++++|++++++|
T Consensus        32 ~p~elA~QLTlid~~lF~~I~p~E~----l~~~w~k~~~~~~~pnl~~~i~~fN~ls~wV~~~IL~~~~~~~Ra~~i~kf  107 (271)
T 3qxl_A           32 TPEEFASQITLMDIPVFKAIQPEEL----ASCGWSKKEKHSLAPNVVAFTRRFNQVSFWVVREILTAQTLKIRAEILSHF  107 (271)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCHHHH----HHTCTTSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCCHHHH----HHhHhccCCcCCCCCcHHHHHHHHhHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence            4556999999  5579999999997    344566655556789999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCC-CCccccccc
Q psy11552        518 IKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQ-SPVIPFMPL  596 (714)
Q Consensus       518 I~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~-~p~IPflg~  596 (714)
                      |+||.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|+.++++++||++||+++++.. +|||||+|+
T Consensus       108 I~IA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~l~~k~~~~~~~L~~l~~~~~N~~~yR~~l~~~~~~p~IPflg~  187 (271)
T 3qxl_A          108 VKIAKKLLELNNLHSLMSVVSALQSAPIFRLTKTWALLNRKDKTTFEKLDYLMSKEDNYKRTREYIRSLKMVPSIPYLGI  187 (271)
T ss_dssp             HHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHTCCHHHHHHHHHHHHTTTTSCCBCCHHH
T ss_pred             HHHHHHHHhcCCchHHHHHHHHcccchHHHHHHHHHHCCHHHHHHHHHHHHHcCcchhHHHHHHHHHhcCCCCCCCchHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999886 899999999


Q ss_pred             hhhchhccccCCCCccCCcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhc-CCC-
Q psy11552        597 LLKDLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTR-HLV-  674 (714)
Q Consensus       597 ~L~Dl~~i~egn~~~~~glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~-~~~-  674 (714)
                      ||+||+|+++|||++.++++||.|+++++                                  ++++.|+.||+. +|+ 
T Consensus       188 ~L~DL~fi~~g~p~~~~~l~n~~k~~~~~----------------------------------~i~~~I~~~Q~~~~Y~~  233 (271)
T 3qxl_A          188 YLLDLIYIDSAYPASGSIMENEQRSNQMN----------------------------------NILRIIADLQVSCSYDH  233 (271)
T ss_dssp             HHHHHHHHHHHSCSSSCHHHHHHHHHHHH----------------------------------HHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHhcCCCcccccccHHHHHHHH----------------------------------HHHHHHHHHhhhccCCC
Confidence            99999999999999844467888999884                                  445555666666 884 


Q ss_pred             CCCCCCCChHHHHHHHhhCCCCC-----CHHHHHHHHhhcCCC
Q psy11552        675 LDPPTPKCESEVKSYVSCLRAMD-----NQRILTSMSQKLEPR  712 (714)
Q Consensus       675 ~~~~~~~~~~~i~~yi~~~~~~~-----~~~~L~~lS~~lEPr  712 (714)
                      +.+     .++|++|+.+++.++     ++|++|++|+++||+
T Consensus       234 ~~~-----~~~iq~~l~~~~~i~~~~~~~ed~~y~lSl~iEP~  271 (271)
T 3qxl_A          234 LTT-----LPHVQKYLKSVRYIEELQKFVEDDNYKLSLRIEPG  271 (271)
T ss_dssp             CCC-----CHHHHHHHHTSCCCGGGHHHHHHHHHHHHHHHCC-
T ss_pred             CCC-----ChHHHHHHHHhHHHHhhcCCCHHHHHHHHHhcCCC
Confidence            877     899999999987765     478999999999995

>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S* 1nvw_S* 1nvx_S* 1bkd_S

Probab=100.00  E-value=1.1e-43  Score=400.53  Aligned_cols=234  Identities=22%  Similarity=0.402  Sum_probs=206.0

Q ss_pred             hhcCCchhHHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHH
Q psy11552        435 LVNNAPSYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQ  512 (714)
Q Consensus       435 ~L~~~p~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~  512 (714)
                      +++-+ +.++|+|||  ++++|+++.+.|+    +...|++.+....+||+..++++||.+++||+++||.++++++|++
T Consensus       217 ll~~~-p~elA~QLTlid~~lf~~I~~~E~----l~~~w~~~~~~~~~pnl~~~i~~~n~ls~wV~~~Il~~~~~~~Ra~  291 (490)
T 2ii0_A          217 LLTLH-PIEIARQLTLLESDLYRAVQPSEL----VGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVA  291 (490)
T ss_dssp             TTTSC-HHHHHHHHHHHHHHHHHHCCGGGT----GGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             hhccC-HHHHHHHHHHHHHHHHHCCCHHHH----HHHHhcCCCcCCCCccHHHHHHHHhHHHHHHHHHhcCCCCHHHHHH
Confidence            34333 446899998  5579999999998    4456677666667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccc
Q psy11552        513 ILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIP  592 (714)
Q Consensus       513 ~i~~fI~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IP  592 (714)
                      ++++||+||.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|..+  +++||++||.++++.++||||
T Consensus       292 ~i~kfI~iA~~c~~l~Nfnsl~AIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~~~p~IP  369 (490)
T 2ii0_A          292 VVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVP  369 (490)
T ss_dssp             HHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHHSCHHHHHHHHHHHHH--HHHHHHHHHHHHHTCCSSCBC
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHhccchhhhHHHHHHHCCHHHHHHHHHHHHh--chHHHHHHHHHHhccCCCccc
Confidence            999999999999999999999999999999999999999999999999999999987  357999999999999999999


Q ss_pred             cccchhhchhccccCCCCccC--C--cccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHH
Q psy11552        593 FMPLLLKDLAFTHDGNKTVVD--G--LVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYC  668 (714)
Q Consensus       593 flg~~L~Dl~~i~egn~~~~~--g--lINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~  668 (714)
                      |||+||+||+|+++|||++++  |  +|||+|++++++++.+|                                  +.|
T Consensus       370 flg~~L~DL~~i~egnp~~~~~~~~~lINf~K~r~~~~ii~~i----------------------------------~~~  415 (490)
T 2ii0_A          370 FFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVAEITGEI----------------------------------QQY  415 (490)
T ss_dssp             CCHHHHHHHHHHHHTSCSEEEETTEEEEEHHHHHHHHHHHHHH----------------------------------GGG
T ss_pred             CcHHHHHHHHHHHhcCCcccCCCCCeEEcHHHHHHHHHHHHHH----------------------------------HHH
Confidence            999999999999999999984  2  99999999995555554                                  555


Q ss_pred             hhcCCCCCCCCCCChHHHHHHHhhCCCCC--C----HHHHHHHHhhcCCCCC
Q psy11552        669 RTRHLVLDPPTPKCESEVKSYVSCLRAMD--N----QRILTSMSQKLEPRRS  714 (714)
Q Consensus       669 q~~~~~~~~~~~~~~~~i~~yi~~~~~~~--~----~~~L~~lS~~lEPr~~  714 (714)
                      |+.+|++.+     .++|+.||.++.++.  +    +|.||++|+++|||..
T Consensus       416 Q~~~Y~~~~-----~~~i~~~l~~l~~~~~~~e~~~ed~ly~~Sl~~EPr~~  462 (490)
T 2ii0_A          416 QNQPYCLRV-----ESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNP  462 (490)
T ss_dssp             SSCCCSCCC-----CHHHHHHHHTCCTTTTSCHHHHHHHHHHHHHHHSCCTT
T ss_pred             hcCCCCCCc-----cHHHHHHHHhccccccCchhhhHHHHHHHHHhhCCCCC
Confidence            666788777     889999999988764  2    4679999999999863

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=100.00  E-value=9.1e-41  Score=407.30  Aligned_cols=228  Identities=22%  Similarity=0.397  Sum_probs=204.0

Q ss_pred             hhHHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHHHHHHHHH
Q psy11552        441 SYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMI  518 (714)
Q Consensus       441 ~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI  518 (714)
                      +.++|+|||  ++++|+++.+.|+    +...|++......+||+..++.+||.+++||+++||.++++++|++++++||
T Consensus       781 ~~elA~QLTlid~~lf~~I~p~E~----l~~~w~~~~~~~~~pn~~~~i~~~n~~s~wV~~~Il~~~~~~~Ra~~i~~fI  856 (1049)
T 3ksy_A          781 PIEIARQLTLLESDLYRAVQPSEL----VGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRII  856 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCGGGG----SSSTTTSSCHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHH----HHHHhcCCCcccCCchHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence            345999999  5579999999998    4455667666677899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCccccccchh
Q psy11552        519 KLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLL  598 (714)
Q Consensus       519 ~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~IPflg~~L  598 (714)
                      +||.+|+++|||||++||++||++++|+||++||+.|+++.++.|++|+.+  +++||++||.++++..+|||||||+||
T Consensus       857 ~iA~~c~~l~Nfnsl~aIisgL~s~~I~RLk~TW~~v~~~~~~~~~~l~~l--~~~n~~~yR~~l~~~~~p~IPflg~~L  934 (1049)
T 3ksy_A          857 EILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYL  934 (1049)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHSHHHHTCTTTTTSSCHHHHHHHHHHHTT--THHHHHHHHHHHTTCCSSCCCCTHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHcccchhHhHHHHHHHCCHHHHHHHHHHHhh--chHHHHHHHHHHhhCCCCccceeHHHH
Confidence            999999999999999999999999999999999999999999999999998  568999999999999999999999999


Q ss_pred             hchhccccCCCCccC----CcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHhhcCCC
Q psy11552        599 KDLAFTHDGNKTVVD----GLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLV  674 (714)
Q Consensus       599 ~Dl~~i~egn~~~~~----glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~~q~~~~~  674 (714)
                      +||+|+++|||++++    |+|||+|++++++++                                  ..++.||+.+|+
T Consensus       935 ~DL~~i~eg~p~~~~~~~~~lINf~K~~~~~~ii----------------------------------~~i~~~Q~~~Y~  980 (1049)
T 3ksy_A          935 TNILKTEEGNPEVLKRHGKELINFSKRRKVAEIT----------------------------------GEIQQYQNQPYC  980 (1049)
T ss_dssp             HHHHHHHHHSCSEEEETTEEEEEHHHHHHHHHHH----------------------------------HHHHTTTSSCCC
T ss_pred             HHHHHHHccCCccccCCCCCeEcHHHHHHHHHHH----------------------------------HHHHHHhcCCCC
Confidence            999999999999973    799999999995554                                  445556667888


Q ss_pred             CCCCCCCChHHHHHHHhhCCCCC--C----HHHHHHHHhhcCCCC
Q psy11552        675 LDPPTPKCESEVKSYVSCLRAMD--N----QRILTSMSQKLEPRR  713 (714)
Q Consensus       675 ~~~~~~~~~~~i~~yi~~~~~~~--~----~~~L~~lS~~lEPr~  713 (714)
                      +.+     .++|++|+.++..+.  +    +|.+|++|+++|||.
T Consensus       981 ~~~-----~~~i~~~l~~l~~~~~~~e~~~~d~ly~lSl~~EPr~ 1020 (1049)
T 3ksy_A          981 LRV-----ESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRN 1020 (1049)
T ss_dssp             CCC-----CHHHHHHHHSCCTTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred             CCc-----chHHHHHHHhcccccccCchhhHHHHHHHHHHhCCCC
Confidence            887     889999999976654  2    356999999999985

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.89  E-value=6.6e-22  Score=221.99  Aligned_cols=187  Identities=52%  Similarity=0.924  Sum_probs=171.9

Q ss_pred             cCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeeeccCccCCCCCCchhhhHHHHHHHHHHHHHHHhhCChHHHHHH
Q psy11552        166 AVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYI  245 (714)
Q Consensus       166 ~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf~~d~~~~~~~~~~~~~~~~ee~l~e~l~~l~q~~~~~~~r~i  245 (714)
                      ..||..+..+++.|.++|+|.+..+...|.|...||+|..++.+..+.++.++.....+.+.+++.++.++.|++.++.+
T Consensus       240 t~SR~~~~~~l~~L~~~G~I~~~~~~i~i~d~~~L~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  319 (469)
T 1o7f_A          240 VHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMI  319 (469)
T ss_dssp             CSCHHHHHHHHHHHHHTTSEEESSCCSSCCSSSCEEEEGGGSSSSCCCCCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccceeeccccceeeecceEEEEehhhhccCCCcchhhhhhhhHHHHHHHHHHhhcCchHHHHHH
Confidence            57999999999999999999999999999999999999999888777888777788889999999999998888888777


Q ss_pred             HHHHHHHHhhccchHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhh
Q psy11552        246 LRKQLKKLQNRYLPREYMLHLEREIEDKEEEEKEEEEEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGV  325 (714)
Q Consensus       246 lr~~~k~l~~r~l~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~  325 (714)
                      +.++                                        +..++.++++.+.+.|.++++|.+|+++++..|+..
T Consensus       320 l~~~----------------------------------------~~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~  359 (469)
T 1o7f_A          320 LRKP----------------------------------------PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGV  359 (469)
T ss_dssp             TTSC----------------------------------------TTSCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHH
T ss_pred             HcCC----------------------------------------chhcCHHHHHHHHHHHhcCHhhhhCCHHHHHHHHHH
Confidence            7664                                        899999999999999999999999999999999995


Q ss_pred             cceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhhhccCCCcceeeec
Q psy11552        326 VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       326 ~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      +....+|++|++|+++||+++++|||++|.|.++..+.+.+..+++|++|||++++.+.||++|++|
T Consensus       360 ~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~~~~~~~~l~~G~~fGe~~ll~~~~~~~tv~a  426 (469)
T 1o7f_A          360 LIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRAASIVL  426 (469)
T ss_dssp             CEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCCSCCSSEEEE
T ss_pred             hheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEEcCCeeEEEecCCCEEEEehhhcCCCceEEEEE
Confidence            4445589999999999999999999999999999877778999999999999999999999999998

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.88  E-value=4.1e-22  Score=210.17  Aligned_cols=183  Identities=22%  Similarity=0.338  Sum_probs=161.2

Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc
Q psy11552        284 ERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK  363 (714)
Q Consensus       284 ~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~  363 (714)
                      .....|+.+++.++.+.+.+.|.++++|++|+++++..|+. .+....|++|++|+++||.++.+|||++|.|.+...+.
T Consensus        20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~~g~   98 (299)
T 3shr_A           20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVD-CMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV   98 (299)
T ss_dssp             --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHH-HCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEETTE
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHH-hcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEECCE
Confidence            34457889999999999999999999999999999999999 66777999999999999999999999999999977664


Q ss_pred             eEEEEecCCCccchhhhccCCCcceeeec---------------------------------------------------
Q psy11552        364 GCVTSLYAGEDFGKLALVNNAPRLIITSM---------------------------------------------------  392 (714)
Q Consensus       364 ~~v~~l~~Gd~FGElaLl~~~pr~atv~A---------------------------------------------------  392 (714)
                       .+..+++|++|||++++.+.||++|++|                                                   
T Consensus        99 -~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~  177 (299)
T 3shr_A           99 -KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKSVPTFQSLPEEILSKLA  177 (299)
T ss_dssp             -EEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHSCHHHHHHHT
T ss_pred             -EEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhhCHHhhhCCHHHHHHHH
Confidence             8999999999999999999999999998                                                   


Q ss_pred             -------------ccccCCCCceEEEEEeCeEEEEeec-----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhhee
Q psy11552        393 -------------VFHQGDEGKSWYIIIQGSVDVVIYG-----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVY  454 (714)
Q Consensus       393 -------------i~~~g~~~~~~YiI~~G~~~~~~~~-----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly  454 (714)
                                   |+++|+.++.+|+|++|.+++....     ...+..+++||+|||.+++.+.|+.            
T Consensus       178 ~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~fGe~~ll~~~~~~------------  245 (299)
T 3shr_A          178 DVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWFGEKALQGEDVRT------------  245 (299)
T ss_dssp             TTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEECGGGGSSSEECS------------
T ss_pred             HhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEeChHHHhCCCCcc------------
Confidence                         8899999999999999999998754     2456789999999999999988887            


Q ss_pred             eeeccccccCCceeeeecCCccccccchh
Q psy11552        455 FTTTAPDIKGPRRYKFRGPNRFQQITANL  483 (714)
Q Consensus       455 ~~itv~ei~~p~~~~~l~r~~f~~~tpnI  483 (714)
                        +++.+ .+++.++.+++..|.......
T Consensus       246 --~tv~a-~~~~~l~~i~~~~f~~ll~~~  271 (299)
T 3shr_A          246 --ANVIA-AEAVTCLVIDRDSFKHLIGGL  271 (299)
T ss_dssp             --SEEEE-SSSEEEEEEEHHHHHHHHTTC
T ss_pred             --eEEEE-CCCEEEEEEeHHHHHHHHccH
Confidence              77777 677788888887776544433

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.88  E-value=2.1e-22  Score=205.32  Aligned_cols=174  Identities=27%  Similarity=0.474  Sum_probs=156.0

Q ss_pred             HHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchh
Q psy11552        299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL  378 (714)
Q Consensus       299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGEl  378 (714)
                      +.+.+.|.++++|++|+++++..|+. .+....+++|++|+++||+++++|+|++|.|.++..+. .+..+++|++|||+
T Consensus         3 ~~i~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~~~~-~~~~~~~g~~fGe~   80 (246)
T 3of1_A            3 QRLEKSIRNNFLFNKLDSDSKRLVIN-CLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYVNDN-KVNSSGPGSSFGEL   80 (246)
T ss_dssp             HHHHHHHHTCTTTTTSCHHHHHHHHT-TCEEEEECTTCEEECTTCCCCEEEEEEECCEEEESTTS-CCEEECTTCEECHH
T ss_pred             HHHHHHHhcCHhhHhCCHHHHHHHHH-hhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEECCE-EEEecCCCCeeehh
Confidence            46788999999999999999999999 66787999999999999999999999999999987655 68999999999999


Q ss_pred             hhccCCCcceeeec----------------------------------------------------------------cc
Q psy11552        379 ALVNNAPRLIITSM----------------------------------------------------------------VF  394 (714)
Q Consensus       379 aLl~~~pr~atv~A----------------------------------------------------------------i~  394 (714)
                      +++.+.||++|++|                                                                |+
T Consensus        81 ~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~  160 (246)
T 3of1_A           81 ALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETII  160 (246)
T ss_dssp             HHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEE
T ss_pred             HHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEE
Confidence            99999999999997                                                                78


Q ss_pred             ccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeecCC
Q psy11552        395 HQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRGPN  474 (714)
Q Consensus       395 ~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~r~  474 (714)
                      ++|++++.+|+|.+|.+++.......+..+++||+|||.+++.+.|+.              +++.+ .+++.++.++++
T Consensus       161 ~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~~~~~~~~~--------------~~v~a-~~~~~~~~i~~~  225 (246)
T 3of1_A          161 REGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVALLNDLPRQ--------------ATVTA-TKRTKVATLGKS  225 (246)
T ss_dssp             CTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHHHHHTCBCS--------------SEEEE-SSCEEEEEEEHH
T ss_pred             eCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHHHhCCCCcc--------------cEEEE-CCCEEEEEEeHH
Confidence            999999999999999999998776677899999999999999998887              77877 577888899999


Q ss_pred             ccccccchhhhhhhh
Q psy11552        475 RFQQITANLDVFLRR  489 (714)
Q Consensus       475 ~f~~~tpnI~~~i~~  489 (714)
                      .|.........++++
T Consensus       226 ~f~~ll~~~~~~~~~  240 (246)
T 3of1_A          226 GFQRLLGPAVDVLKL  240 (246)
T ss_dssp             HHHHHCTTHHHHHHH
T ss_pred             HHHHHhccHHHHHhc
Confidence            888877766655543

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.87  E-value=3.3e-22  Score=219.15  Aligned_cols=186  Identities=27%  Similarity=0.475  Sum_probs=165.8

Q ss_pred             HhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce
Q psy11552        285 RQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG  364 (714)
Q Consensus       285 ~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~  364 (714)
                      ....+..+++.++.+.+.+.|.++++|++|+++++..|+. .+....|++|++|+++||+++++|+|++|.|+++..+. 
T Consensus       112 ~~~~~~~~ks~~~~~~i~~~l~~~~lF~~L~~~~l~~l~~-~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~~~~-  189 (381)
T 4din_B          112 SYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFD-AMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYVNGE-  189 (381)
T ss_dssp             TCCCCCCCCCHHHHHHHHHHHTTCTTSSSCCHHHHHHHHH-HCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEETTE-
T ss_pred             cccCCCCCCCHHHHHHHHHHHhCChhhhcCCHHHHHHHHH-hceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEECCe-
Confidence            4456788899999999999999999999999999999999 67888999999999999999999999999999998654 


Q ss_pred             EEEEecCCCccchhhhccCCCcceeeec----------------------------------------------------
Q psy11552        365 CVTSLYAGEDFGKLALVNNAPRLIITSM----------------------------------------------------  392 (714)
Q Consensus       365 ~v~~l~~Gd~FGElaLl~~~pr~atv~A----------------------------------------------------  392 (714)
                      .+..+++|++|||++++.+.||++|++|                                                    
T Consensus       190 ~v~~l~~G~~fGe~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~v~~f~~Ls~~el~~l~~  269 (381)
T 4din_B          190 WVTNISEGGSFGELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLEKWERLTVAD  269 (381)
T ss_dssp             EEEEEESSCCBCGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTTCCTTHHHHHHT
T ss_pred             EeeeCCCCCEEEchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhhhHHHHhccHHHHHHHHH
Confidence            8899999999999999999999999998                                                    


Q ss_pred             ------------ccccCCCCceEEEEEeCeEEEEeec-----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheee
Q psy11552        393 ------------VFHQGDEGKSWYIIIQGSVDVVIYG-----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYF  455 (714)
Q Consensus       393 ------------i~~~g~~~~~~YiI~~G~~~~~~~~-----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~  455 (714)
                                  |+++|+.++++|+|.+|.+++....     ...+..+++|++|||.+++.+.|+.             
T Consensus       270 ~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~fGe~all~~~~r~-------------  336 (381)
T 4din_B          270 ALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRA-------------  336 (381)
T ss_dssp             TCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEECTTGGGSCCBCS-------------
T ss_pred             hhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEechHHHhCCCCce-------------
Confidence                        8899999999999999999998843     2346789999999999999999887             


Q ss_pred             eeccccccCCceeeeecCCccccccchhhhhh
Q psy11552        456 TTTAPDIKGPRRYKFRGPNRFQQITANLDVFL  487 (714)
Q Consensus       456 ~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i  487 (714)
                       +++.+ .+++.++.+++..|.....+...++
T Consensus       337 -~tv~A-~~~~~ll~i~~~~f~~ll~~~~~i~  366 (381)
T 4din_B          337 -ATVVA-RGPLKCVKLDRPRFERVLGPCSEIL  366 (381)
T ss_dssp             -SEEEE-SSCBEEEEEEHHHHHHHHCCHHHHH
T ss_pred             -eEEEE-cCCEEEEEEeHHHHHHHHhhhHHHH
Confidence             78887 6678888999988887666554443

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.87  E-value=1.1e-21  Score=240.31  Aligned_cols=108  Identities=29%  Similarity=0.511  Sum_probs=97.5

Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEe
Q psy11552        282 EEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY  361 (714)
Q Consensus       282 ~~~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~  361 (714)
                      ....+.++|.+|+.+|++.|+..|+++++|++|++.++.+|+. .|....+++|++||+|||.|++||||++|+|.|+..
T Consensus        21 ~i~~L~K~p~~Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~-~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~   99 (999)
T 4f7z_A           21 WIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICL-CGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVS   99 (999)
T ss_dssp             HHHHHHSCSSSCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEC
T ss_pred             HHHHhcCCcccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHh-heEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEe
Confidence            3456678899999999999999999999999999999999999 677779999999999999999999999999999885


Q ss_pred             Cc------eEEEEecCCCccchhhhccCCCcceeee
Q psy11552        362 GK------GCVTSLYAGEDFGKLALVNNAPRLIITS  391 (714)
Q Consensus       362 ~~------~~v~~l~~Gd~FGElaLl~~~pr~atv~  391 (714)
                      +.      ..+..+++|+.||| +++++.||+|||+
T Consensus       100 ~~~~~~~~~~v~~l~~G~sFGE-all~n~pRtaTv~  134 (999)
T 4f7z_A          100 ETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIV  134 (999)
T ss_dssp             SSSCTTSCEEEEEEETTCEECG-GGGGTCCCSSEEE
T ss_pred             cCCCCCCceeEEEecCCcchhh-hhccCCCcceEEE
Confidence            32      17899999999999 8999999988743

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.86  E-value=1e-21  Score=217.70  Aligned_cols=185  Identities=24%  Similarity=0.430  Sum_probs=161.1

Q ss_pred             cCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce--
Q psy11552        287 IGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG--  364 (714)
Q Consensus       287 ~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~--  364 (714)
                      ..+..+++.++.+.+.+.|.++++|++|+++++..|+. .+....|++|++||++||.++++|||++|.|+|+....|  
T Consensus       129 ~~~~~~ks~~~~~~i~~~L~~~~lF~~L~~~~l~~l~~-~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~~~~G~~  207 (416)
T 3tnp_B          129 SRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLD-AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG  207 (416)
T ss_dssp             -CCCCCCCHHHHHHHHHHHTTSHHHHTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEECSSCE
T ss_pred             cccCCCCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHH-hcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEEecCCCE
Confidence            45567899999999999999999999999999999999 677889999999999999999999999999999885443  


Q ss_pred             -EEEEecCCCccchhhhccCCCcceeeec---------------------------------------------------
Q psy11552        365 -CVTSLYAGEDFGKLALVNNAPRLIITSM---------------------------------------------------  392 (714)
Q Consensus       365 -~v~~l~~Gd~FGElaLl~~~pr~atv~A---------------------------------------------------  392 (714)
                       .+..+++|++|||++++.+.||++|++|                                                   
T Consensus       208 ~~v~~l~~G~~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~~~~L~~v~lf~~Ls~~el~~L~  287 (416)
T 3tnp_B          208 RCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVV  287 (416)
T ss_dssp             EEEEEEESCCEECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSSSSSGGGCGGGTTCCHHHHHHHH
T ss_pred             EEEEEecCCCEEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHHHHHHhhchHhhcCCHHHHHHHH
Confidence             6889999999999999999999999997                                                   


Q ss_pred             -------------ccccCCCCceEEEEEeCeEEEEeec----------ceeeeeecCCCccchhhhhcCCchhHHHHHHh
Q psy11552        393 -------------VFHQGDEGKSWYIIIQGSVDVVIYG----------KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLE  449 (714)
Q Consensus       393 -------------i~~~g~~~~~~YiI~~G~~~~~~~~----------~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~  449 (714)
                                   |+++|+.++.+|+|++|.+++....          ...+..+++|++|||.+++.+.|+.       
T Consensus       288 ~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G~~fGE~all~~~~r~-------  360 (416)
T 3tnp_B          288 DVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRA-------  360 (416)
T ss_dssp             HHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTTCEESGGGGTCCSCCS-------
T ss_pred             hhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCCCEecHHHHhCCCCce-------
Confidence                         8899999999999999999998743          2346789999999999999998887       


Q ss_pred             hhheeeeeccccccCCceeeeecCCccccccchhhhhh
Q psy11552        450 QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFL  487 (714)
Q Consensus       450 ~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i  487 (714)
                             +++.+ .+++.++.+++..|.........+.
T Consensus       361 -------~tv~A-~~~~~ll~I~~~~f~~ll~~~p~i~  390 (416)
T 3tnp_B          361 -------ASAHA-IGTVKCLAMDVQAFERLLGPCMEIM  390 (416)
T ss_dssp             -------SEEEE-EEEEEEEEEEHHHHHHHHCCHHHHH
T ss_pred             -------eEEEE-cCCeEEEEEEHHHHHHHhcchHHHH
Confidence                   67777 5667788888888877666554443

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.86  E-value=1.5e-21  Score=204.74  Aligned_cols=183  Identities=27%  Similarity=0.451  Sum_probs=161.1

Q ss_pred             HHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc
Q psy11552        284 ERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK  363 (714)
Q Consensus       284 ~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~  363 (714)
                      ..+..|..+++.++.+.+.+.|.++++|++|+++++..|+. .+....+++|++|+++||+++.+|+|++|.|.++..+ 
T Consensus        20 ~~~~~~~~~ks~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~g-   97 (291)
T 2qcs_B           20 ASYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFD-AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNN-   97 (291)
T ss_dssp             HTCCCCCCCCCHHHHHHHHHHTTTCHHHHTSCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEETT-
T ss_pred             cccCCCCCCCCHHHHHHHHHHHhcChhhhhCCHHHHHHHHH-hccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEECC-
Confidence            34567889999999999999999999999999999999999 5677799999999999999999999999999999855 


Q ss_pred             eEEEEecCCCccchhhhccCCCcceeeec---------------------------------------------------
Q psy11552        364 GCVTSLYAGEDFGKLALVNNAPRLIITSM---------------------------------------------------  392 (714)
Q Consensus       364 ~~v~~l~~Gd~FGElaLl~~~pr~atv~A---------------------------------------------------  392 (714)
                      ..+..+++|++|||.+++.+.||++|++|                                                   
T Consensus        98 ~~~~~l~~G~~fGe~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~lf~~l~~~~~~~l~  177 (291)
T 2qcs_B           98 EWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSKVSILESLDKWERLTVA  177 (291)
T ss_dssp             EEEEEECTTCEECGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTTCCHHHHHHHH
T ss_pred             eEEEEcCCCCccchHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhhchHhhhCCHHHHHHHH
Confidence            48999999999999999999999999997                                                   


Q ss_pred             -------------ccccCCCCceEEEEEeCeEEEEeec-----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhhee
Q psy11552        393 -------------VFHQGDEGKSWYIIIQGSVDVVIYG-----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVY  454 (714)
Q Consensus       393 -------------i~~~g~~~~~~YiI~~G~~~~~~~~-----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly  454 (714)
                                   |+++|++++.+|+|.+|.+++....     ...+..+++|++|||.+++.+.|+.            
T Consensus       178 ~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGe~~ll~~~~~~------------  245 (291)
T 2qcs_B          178 DALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPKA------------  245 (291)
T ss_dssp             HHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEECSGGGTCCCCCS------------
T ss_pred             hhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEecHHHHcCCCCcc------------
Confidence                         7899999999999999999998632     2457789999999999999998887            


Q ss_pred             eeeccccccCCceeeeecCCccccccchh
Q psy11552        455 FTTTAPDIKGPRRYKFRGPNRFQQITANL  483 (714)
Q Consensus       455 ~~itv~ei~~p~~~~~l~r~~f~~~tpnI  483 (714)
                        +++.+ .+++.++.++++.|.......
T Consensus       246 --~tv~a-~~~~~~~~i~~~~f~~~l~~~  271 (291)
T 2qcs_B          246 --ATVVA-RGPLKCVKLDRPRFERVLGPC  271 (291)
T ss_dssp             --SEEEE-EEEEEEEEEEHHHHHHHHCCH
T ss_pred             --eEEEE-CCcEEEEEEcHHHHHHHhccH
Confidence              67776 556777888888776554443

>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=5.2e-21  Score=169.55  Aligned_cols=72  Identities=29%  Similarity=0.460  Sum_probs=67.0

Q ss_pred             CCCccccccccCCccccccccchhhHHHHHHhh-------CCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCc
Q psy11552         56 ESGTLRDRKTSGGRTIARRCASGSELVDWLMSL-------APSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETI  128 (714)
Q Consensus        56 ~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~-------~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~  128 (714)
                      .+..|||||+++  |+|++||+|+||||||+++       +.                                      
T Consensus        23 ~g~~ikdrr~~l--k~y~~CF~GsE~VdWL~~~l~~~~~fg~--------------------------------------   62 (105)
T 2ysr_A           23 AGMPLRKHRQHF--KKYGNCFTAGEAVDWLYDLLRNNSNFGP--------------------------------------   62 (105)
T ss_dssp             HSCSCCCCCCSS--SSCSSCEEHHHHHHHHHHHHHHSSSSTT--------------------------------------
T ss_pred             cCCCcceeeeCC--EECCccccchHHHHHHHHhcccccccCc--------------------------------------
Confidence            457999999999  9999999999999999998       55                                      


Q ss_pred             hhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCc---cccCcCceeeec
Q psy11552        129 PMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQ---AFRDKCILYNFW  204 (714)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~---~F~d~~~~Yrf~  204 (714)
                                                           +.+|+||+.+||+||+.|+|+||.++|   .|+|++.||||.
T Consensus        63 -------------------------------------~~sR~eAv~lgq~Ll~~gvi~hV~~~~~~~~F~D~~~lYrF~  104 (105)
T 2ysr_A           63 -------------------------------------EVTRQQTIQLLRKFLKNHVIEDIKGRWGSENVDDNNQLFRFP  104 (105)
T ss_dssp             -------------------------------------TCCHHHHHHHHHHHHHTTSSEESSCCCSCSCCCSSSCEEECC
T ss_pred             -------------------------------------cCCHHHHHHHHHHHHHCCCeEeccCccCcccccCCCeeEEec
Confidence                                                 689999999999999999999999887   899999999996

>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A

Probab=99.80  E-value=6.1e-20  Score=162.11  Aligned_cols=85  Identities=24%  Similarity=0.302  Sum_probs=72.8

Q ss_pred             HHHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552         46 WVLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE  124 (714)
Q Consensus        46 ~~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~  124 (714)
                      +.|...|.+.. +..+++|++++  ++|++||+|+|+||||++++.                                  
T Consensus         9 ~~Lv~~Mqd~~~Gv~~~~r~~~~--~~~~~cF~GselVdWLi~~~~----------------------------------   52 (109)
T 1uhw_A            9 GALYLSMKDPEKGIKELNLEKDK--KVFNHCLTGSGVIDWLVSNKL----------------------------------   52 (109)
T ss_dssp             HHHHHHHHCTTTSCCCEEEESSS--CEEEEECCHHHHHHHHHHHTS----------------------------------
T ss_pred             HHHHHHHhCCCCCceeeeeEECC--EEccccccchHHHHHHHHcCC----------------------------------
Confidence            45556666654 55589999999  999999999999999999886                                  


Q ss_pred             CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCC----------Cccc
Q psy11552        125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNG----------EQAF  194 (714)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~----------~~~F  194 (714)
                                                               +.+|+||+.+||.|+++|+|+||.+          +|+|
T Consensus        53 -----------------------------------------~~~R~EAv~lgq~Ll~~G~i~hV~d~~~~~~~~~~~~~F   91 (109)
T 1uhw_A           53 -----------------------------------------VRNRQEGLMISASLLSEGYLQPAGDLSKNAADGIAENPF   91 (109)
T ss_dssp             -----------------------------------------SSSHHHHHHHHHHHHHHTSSEECSSSHHHHHHHSSSCCC
T ss_pred             -----------------------------------------CCCHHHHHHHHHHHHHCCeEEeCccccccccccccccce
Confidence                                                     6899999999999999999999954          8999


Q ss_pred             cCc-CceeeeccCc
Q psy11552        195 RDK-CILYNFWQDK  207 (714)
Q Consensus       195 ~d~-~~~Yrf~~d~  207 (714)
                      .|+ ++||||..+-
T Consensus        92 ~D~~~~lYrF~~~~  105 (109)
T 1uhw_A           92 LDSPDAFYYFPDSG  105 (109)
T ss_dssp             CCCSSCCEECTTSS
T ss_pred             ecCCCcEEEEcCCC
Confidence            987 6999998764

>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31

Probab=99.80  E-value=1e-19  Score=165.11  Aligned_cols=90  Identities=24%  Similarity=0.296  Sum_probs=76.9

Q ss_pred             HHHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552         46 WVLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE  124 (714)
Q Consensus        46 ~~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~  124 (714)
                      ..|...|.... +..++||++++  ++|++||+|+|+||||++++.                                  
T Consensus         9 ~~L~~~m~~~~~Gv~i~~rr~~~--k~y~~cF~GsdlVdWL~~~~~----------------------------------   52 (120)
T 1v3f_A            9 HRIVDKMHDTSTGIRPSPNMEQG--STYKKTFLGSSLVDWLISSNF----------------------------------   52 (120)
T ss_dssp             HHHHHHHTCSSSSCCCCCCCSSS--SCCSSCEEHHHHHHHHHHTTS----------------------------------
T ss_pred             HHHHHHHhCccCCCeeeeeEEcc--EEccceeehHHHHHHHHHcCC----------------------------------
Confidence            45666666655 44489999999  999999999999999999887                                  


Q ss_pred             CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecC-----------CCcc
Q psy11552        125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVN-----------GEQA  193 (714)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~-----------~~~~  193 (714)
                                                               +.+|.||+.+||+||++|+|+||.           +++.
T Consensus        53 -----------------------------------------~~sR~eAv~lgq~Ll~~G~i~hV~~~s~~~~~~~~~~~~   91 (120)
T 1v3f_A           53 -----------------------------------------AASRLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQ   91 (120)
T ss_dssp             -----------------------------------------CSSHHHHHHHHHHHHHHTSEEECSSSSCSSCCCSSCCCC
T ss_pred             -----------------------------------------CCCHHHHHHHHHHHHHCCCeEEccccccccccccccccc
Confidence                                                     689999999999999999999998           7899


Q ss_pred             ccCcC-ceeeeccCccCCCC
Q psy11552        194 FRDKC-ILYNFWQDKEGSSS  212 (714)
Q Consensus       194 F~d~~-~~Yrf~~d~~~~~~  212 (714)
                      |.|+. .||||..++++..+
T Consensus        92 f~d~~~~lYrF~~~~~~~~s  111 (120)
T 1v3f_A           92 FLDDSTALYTFAESYKKKVS  111 (120)
T ss_dssp             CCCSSSCEEEECSSSCCCCC
T ss_pred             eecCCccEEEeChhhccCCC
Confidence            99986 99999988665433

>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31

Probab=99.76  E-value=4.7e-19  Score=157.11  Aligned_cols=82  Identities=18%  Similarity=0.291  Sum_probs=71.1

Q ss_pred             HHHHHHhhcC-CCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552         46 WVLRTLLLND-ESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE  124 (714)
Q Consensus        46 ~~l~~~~~~~-~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~  124 (714)
                      +.+...|... .+..|+||++++  ++|++||+|+|+||||+++.+.                                 
T Consensus        22 ~~iv~~M~~p~~Gv~i~dr~~~~--~~~~~~F~G~dlVdWL~~~~~~---------------------------------   66 (105)
T 1fsh_A           22 SAIVRVMQLPDSGLEIRDRMWLK--ITIANAVIGADVVDWLYTHVEG---------------------------------   66 (105)
T ss_dssp             HHHHHHHHSTTSSSCSSCEEETT--EEESSCCHHHHHHHHHHHHCCC---------------------------------
T ss_pred             HHHHHHHhCCCCCceeEEeEeCC--EECCceeEcHHHHHHHHHhCcC---------------------------------
Confidence            4444555554 477899999999  9999999999999999999864                                 


Q ss_pred             CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeeec
Q psy11552        125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFW  204 (714)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf~  204 (714)
                                                               +.+|.||+.+||.|++.|+|+||.++|.|+|+ .||+|.
T Consensus        67 -----------------------------------------~~~r~eAv~lg~~Ll~~G~I~hv~~~~~F~D~-~~y~f~  104 (105)
T 1fsh_A           67 -----------------------------------------FKERREARKYASSMLKHGFLRHTVNKITFSEQ-CYYVFG  104 (105)
T ss_dssp             -----------------------------------------CSSHHHHHHHHHHHHHTTTEECSSSSCCCCSS-SCCEEC
T ss_pred             -----------------------------------------CCCHHHHHHHHHHHHHCCcEEEcCCCCcccCC-CeeecC
Confidence                                                     58999999999999999999999999999997 469995

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.75  E-value=1.6e-17  Score=186.32  Aligned_cols=108  Identities=29%  Similarity=0.501  Sum_probs=96.0

Q ss_pred             HHHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC
Q psy11552        283 EERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG  362 (714)
Q Consensus       283 ~~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~  362 (714)
                      ...+.+|+..++.++.+.+.+.|.++++|++|+++++..|+. .+....|++|++||++||+++++|+|++|.|.++...
T Consensus        22 ~~~l~~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~  100 (469)
T 1o7f_A           22 IACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICL-CGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSE  100 (469)
T ss_dssp             HHHHTSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECS
T ss_pred             HHHhcCChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHH-hceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEec
Confidence            344678999999999999999999999999999999999999 5677799999999999999999999999999998853


Q ss_pred             c------eEEEEecCCCccchhhhccCCCcceeeec
Q psy11552        363 K------GCVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       363 ~------~~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      .      ..+..+++|++|||++ +.+.||++|++|
T Consensus       101 ~~g~~~~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A  135 (469)
T 1o7f_A          101 TSSHQDAVTICTLGIGTAFGESI-LDNTPRHATIVT  135 (469)
T ss_dssp             SSCGGGCEEEEEECTTCEECGGG-GGTCBCSSEEEE
T ss_pred             CCCCCcceEEEEccCCCCcchhh-hCCCCccceEEE
Confidence            2      2788999999999999 888888665554

>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31

Probab=99.74  E-value=2.2e-18  Score=156.31  Aligned_cols=84  Identities=24%  Similarity=0.317  Sum_probs=72.5

Q ss_pred             HHHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552         46 WVLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE  124 (714)
Q Consensus        46 ~~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~  124 (714)
                      +.|...|.+.. +..+++|++++  ++|++||+|+|+||||++++.                                  
T Consensus        19 ~~Lv~~Mqd~~~GV~~~~r~~~~--~~~~~cF~GsdlVdWLl~~~~----------------------------------   62 (127)
T 2cso_A           19 GALYLSMKDTEKGIKELNLEKDK--KIFNHCFTGNCVIDWLVSNQS----------------------------------   62 (127)
T ss_dssp             HHHHHHHHSSSSSCCCEEEEETT--EEEEEEEEHHHHHHHHHHTTS----------------------------------
T ss_pred             HHHHHHHhCCCCCceeeeEEecc--EEecceeechHHHHHHHHcCC----------------------------------
Confidence            45556666654 55589999999  999999999999999999876                                  


Q ss_pred             CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceec----------CCCccc
Q psy11552        125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHV----------NGEQAF  194 (714)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv----------~~~~~F  194 (714)
                                                               +.+|+||+.+||.|+++|+|+||          ++++.|
T Consensus        63 -----------------------------------------~~sR~EAv~lg~~Ll~~G~i~hV~d~s~~~~~~~~~~~f  101 (127)
T 2cso_A           63 -----------------------------------------VRNRQEGLMIASSLLNEGYLQPAGDMSKSAVDGTAENPF  101 (127)
T ss_dssp             -----------------------------------------CSSHHHHHHHHHHHHHHTSSEEESHHHHHHHHSSCSCCC
T ss_pred             -----------------------------------------CCCHHHHHHHHHHHHHCCeEEeCccccccccccccccce
Confidence                                                     68999999999999999999999          678899


Q ss_pred             cCc-CceeeeccC
Q psy11552        195 RDK-CILYNFWQD  206 (714)
Q Consensus       195 ~d~-~~~Yrf~~d  206 (714)
                      .|+ +.||||..+
T Consensus       102 ~dd~~~lYrF~~~  114 (127)
T 2cso_A          102 LDNPDAFYYFPDS  114 (127)
T ss_dssp             CCCTTCEEECSSS
T ss_pred             ecCCCcEEEecCC
Confidence            876 699999876

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}

Probab=99.57  E-value=2.8e-15  Score=163.00  Aligned_cols=84  Identities=24%  Similarity=0.343  Sum_probs=73.0

Q ss_pred             HHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCC
Q psy11552         47 VLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSET  125 (714)
Q Consensus        47 ~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~  125 (714)
                      .+...|.+.+ +..|+||++|+  ++|++||+|+|+||||+++...                                  
T Consensus        11 ~i~~~M~~~~~Gl~i~dr~~~~--~~~~~~F~G~elVdWL~~~~~~----------------------------------   54 (385)
T 3ml6_A           11 SVTKAMAAPESGLEVRDRMWLK--ITIPNAFLGSDVVDWLYHHVEG----------------------------------   54 (385)
T ss_dssp             HHHHHHHSTTSSSCCEEECCSS--CCEEEEEEHHHHHHHHHHTCCS----------------------------------
T ss_pred             HHHHHhhCCCCCceeEeeEECc--EECCCeEEhHHHHHHHHHccCC----------------------------------
Confidence            3445565655 66799999999  9999999999999999999764                                  


Q ss_pred             CCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeeecc
Q psy11552        126 ETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ  205 (714)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf~~  205 (714)
                                                              +.+|+||+.+||.|+++|+|+||.++|.|+|++ +|+|.+
T Consensus        55 ----------------------------------------~~~R~eA~~~g~~Ll~~G~i~hv~~~~~F~d~~-~y~f~~   93 (385)
T 3ml6_A           55 ----------------------------------------FPERREARKYASGLLKAGLIRHTVNKITFSEQC-YYVFGD   93 (385)
T ss_dssp             ----------------------------------------CSSHHHHHHHHHHHHHHSSEEESSSCSSCCSSS-EEEECC
T ss_pred             ----------------------------------------CCCHHHHHHHHHHHHhCCcEEEcCCcceecCcc-eEEeec
Confidence                                                    689999999999999999999999999999986 699976


Q ss_pred             Cc
Q psy11552        206 DK  207 (714)
Q Consensus       206 d~  207 (714)
                      ..
T Consensus        94 ~~   95 (385)
T 3ml6_A           94 LS   95 (385)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>3t6a_A Breast cancer anti-estrogen resistance protein 3; CDC25-homology domain, GTPase exchange factor, signaling Pro; HET: POG; 2.40A {Homo sapiens}

Probab=99.55  E-value=8.4e-15  Score=151.14  Aligned_cols=113  Identities=21%  Similarity=0.318  Sum_probs=91.4

Q ss_pred             hhhhhhhhHHHhHhhhhccccC-hhhHHHHHHHHHHHHHHHh-hcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHH
Q psy11552        485 VFLRRFNEIQYWVITEILLVTS-LNKRVQILRKMIKLAAYCK-EYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKT  562 (714)
Q Consensus       485 ~~i~~fn~ls~wV~~~Il~~~~-~~~R~~~i~~fI~iA~~~~-~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~  562 (714)
                      .+++|||.+++||+.+||.|.. .++|+.++++||+||.+|+ .++|+++++||+.||+++.|+||.+||+.+++++.+.
T Consensus        97 dlleR~~~l~~wva~~IL~C~~~~~eR~~lL~k~IqiA~~Lk~~~gNL~sf~AVm~aL~~pqVSRL~~TW~~Lr~k~te~  176 (333)
T 3t6a_A           97 DIIERHNTMAIGIAVDILGCTGTLEDRAATLSKIIQVAVELKDSMGDLYSFSALMKALEMPQITRLEKTWTALRHQYTQT  176 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCSHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHSHHHHTCHHHHHHHHHHSHHH
T ss_pred             HHHHHhcccHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhccHHHHHHHHHHHHhhHHhhHH
Confidence            5799999999999999999864 7899999999999999999 9999999999999999999999999999999999997


Q ss_pred             HHHHHhccCCCCchHHHHHHHHhCC----CCccccccchhh
Q psy11552        563 YTELEALIDPSKNHRAYRQAVSKLQ----SPVIPFMPLLLK  599 (714)
Q Consensus       563 ~~~l~~l~~~~~n~~~yR~~l~~~~----~p~IPflg~~L~  599 (714)
                      .-.+++.+.|.  .+.+.+--....    .-|+|++-.+++
T Consensus       177 ai~yEk~LkP~--~k~lneG~~~~~~~~~~~t~Phv~Pl~~  215 (333)
T 3t6a_A          177 AILYEKQLKPF--SKLLHEGRESTCVPPNNVSVPLLMPLVT  215 (333)
T ss_dssp             HHHHHHTHHHH--HHHHHTTCGGGSCCTTCCSBCCCHHHHH
T ss_pred             HHHHHHHhhHH--HHHhhCCCCCCCCCCCCccchhHHHHHH
Confidence            77777765552  122222111111    247888865543

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.50  E-value=1e-13  Score=128.58  Aligned_cols=104  Identities=22%  Similarity=0.327  Sum_probs=96.8

Q ss_pred             cCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEE
Q psy11552        287 IGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCV  366 (714)
Q Consensus       287 ~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v  366 (714)
                      ..|+..++.++.+.+.+.|.++++|++|+++++..|+. .+....|++|++|+++|++++.+|+|++|.|++...+. .+
T Consensus         7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~g~-~~   84 (139)
T 3ocp_A            7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVD-CMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTKEGV-KL   84 (139)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHH-HCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEETTE-EE
T ss_pred             cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHH-hcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEECCE-EE
Confidence            45678899999999999999999999999999999999 56777999999999999999999999999999977554 89


Q ss_pred             EEecCCCccchhhhccCCCcceeeec
Q psy11552        367 TSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       367 ~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      ..+++|++|||++++.+.|+.++++|
T Consensus        85 ~~~~~G~~fGe~~~l~~~~~~~~~~a  110 (139)
T 3ocp_A           85 CTMGPGKVFGELAILYNCTRTATVKT  110 (139)
T ss_dssp             EEECTTCEESCHHHHHCCCCSSEEEE
T ss_pred             EEeCCCCEeccHHHHCCCCcceEEEE
Confidence            99999999999999999999999998

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.47  E-value=1.7e-13  Score=130.51  Aligned_cols=105  Identities=26%  Similarity=0.458  Sum_probs=95.0

Q ss_pred             cCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce--
Q psy11552        287 IGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG--  364 (714)
Q Consensus       287 ~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~--  364 (714)
                      ..+..+++.++.+.+.+.|.++++|.+|+++++..|+. .+....|++|++|+++|++++++|+|++|.|.++...+|  
T Consensus        22 ~~~~~~~~~~~~~~~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~  100 (161)
T 3idb_B           22 SRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLD-AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVG  100 (161)
T ss_dssp             --CCCCCCHHHHHHHHHHHTTCHHHHTSCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEEETTEE
T ss_pred             CcccCCCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHH-hcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEEcCCCCe
Confidence            34567889999999999999999999999999999999 567779999999999999999999999999999874333  


Q ss_pred             -EEEEecCCCccchhhhccCCCcceeeec
Q psy11552        365 -CVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       365 -~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                       .+..+++|++|||++++.+.|++++++|
T Consensus       101 ~~~~~~~~G~~fGe~~~~~~~~~~~~v~A  129 (161)
T 3idb_B          101 RCVGNYDNRGSFGELALMYNTPRAATITA  129 (161)
T ss_dssp             EEEEEEESCCEECGGGGTCCCCCSSEEEE
T ss_pred             EEEEEcCCCCEechHHHHcCCCcccEEEE
Confidence             7888999999999999999999999998

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.46  E-value=2.6e-13  Score=128.34  Aligned_cols=106  Identities=27%  Similarity=0.471  Sum_probs=96.7

Q ss_pred             HhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce
Q psy11552        285 RQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG  364 (714)
Q Consensus       285 ~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~  364 (714)
                      ....+..+++.++.+.+.+.|.++++|.+|+++++..|+. .+....+++|++|+++|++++++|+|++|.|.++..+. 
T Consensus        20 ~~~~~~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~-   97 (154)
T 3pna_A           20 SYVRKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFD-AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-   97 (154)
T ss_dssp             --CCCCCCCCHHHHHHHHHHHHHCGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTE-
T ss_pred             ccccccCCCCHHHHHHHHHHHHhChhhhhCCHHHHHHHHH-hceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEECCE-
Confidence            4556677889999999999999999999999999999999 56777999999999999999999999999999998554 


Q ss_pred             EEEEecCCCccchhhhccCCCcceeeec
Q psy11552        365 CVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       365 ~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      .+..+++|++||+.+++.+.|+.++++|
T Consensus        98 ~~~~~~~G~~fGe~~~~~~~~~~~~v~A  125 (154)
T 3pna_A           98 WATSVGEGGSFGELALIYGTPRAATVKA  125 (154)
T ss_dssp             EEEEECTTCEECCHHHHHCCCCSSEEEE
T ss_pred             EEEEecCCCEeeehHhhcCCCcceEEEE
Confidence            8899999999999999999999999998

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.45  E-value=7.4e-14  Score=128.76  Aligned_cols=103  Identities=30%  Similarity=0.509  Sum_probs=94.1

Q ss_pred             CCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeec-CCCEEEccCCcCCeEEEEEEeEEEEEEeCceEE
Q psy11552        288 GKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPR-KGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCV  366 (714)
Q Consensus       288 ~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~-~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v  366 (714)
                      .||..|+.+++..+.+.|.++++|..|+++++..|+. .+....++ +|++|+++|++++.+|||++|.|.++..+ |..
T Consensus         1 ~~p~~r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-g~~   78 (134)
T 2d93_A            1 GSSGSSGDDDIEQLLEFMHQLPAFANMTMSVRRELCS-VMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISHPD-GKV   78 (134)
T ss_dssp             CCCSCCSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTT-TEEEEEECSSSCEEECTTCEECEEEECCBSCEEEECSS-SCE
T ss_pred             CChhhcCHHHHHHHHHHHhCCcchhhCCHHHHHHHHH-hheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEcCC-CcE
Confidence            3789999999999999999999999999999999999 56777999 99999999999999999999999998643 344


Q ss_pred             EEecCCCccchhhhccCCCcceee-ec
Q psy11552        367 TSLYAGEDFGKLALVNNAPRLIIT-SM  392 (714)
Q Consensus       367 ~~l~~Gd~FGElaLl~~~pr~atv-~A  392 (714)
                      ..+++|++||+.+++.+.|+.+++ +|
T Consensus        79 ~~l~~G~~fG~~~~~~~~~~~~~~~~a  105 (134)
T 2d93_A           79 ENLFMGNSFGITPTLDKQYMHGIVRTK  105 (134)
T ss_dssp             EEECTTCEESCCSSSCCEECCSEEEES
T ss_pred             EEecCCCccChhHhcCCCcceeEEEEE
Confidence            889999999999999999998888 77

>3t6g_A SH2 domain-containing protein 3C; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}

Probab=99.44  E-value=1.8e-13  Score=141.16  Aligned_cols=109  Identities=26%  Similarity=0.386  Sum_probs=94.0

Q ss_pred             hhhhhhhhHHHhHhhhhcccc-ChhhHHHHHHHHHHHHHHHh-hcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHH
Q psy11552        485 VFLRRFNEIQYWVITEILLVT-SLNKRVQILRKMIKLAAYCK-EYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKT  562 (714)
Q Consensus       485 ~~i~~fn~ls~wV~~~Il~~~-~~~~R~~~i~~fI~iA~~~~-~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~  562 (714)
                      .+++|||.+++||+.+||.|. +..+|+.++++||+||.+|+ .++|+++++||+.||+++.|.||.+||..+++++.+.
T Consensus        98 dlleR~~~l~~~va~~IL~c~g~~~~Ra~lL~k~IqiA~~Lk~~~gnL~sF~AIm~aL~~pqVsRLe~TW~~Lr~k~te~  177 (331)
T 3t6g_A           98 DLLERFHTMSIMLAVDILGSTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALDMAQISRLEQTWVTLRQRHTEG  177 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHTSCBHHHHHHHHHHHTSHHHHTCHHHHHHHHHHCHHH
T ss_pred             HHHHHhcchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhhccHHHHHHHHHHHHhhhhhhHH
Confidence            579999999999999999997 89999999999999999999 9999999999999999999999999999999999998


Q ss_pred             HHHHHhccCCCCchHHHHHHHHhCC------CCccccccchhh
Q psy11552        563 YTELEALIDPSKNHRAYRQAVSKLQ------SPVIPFMPLLLK  599 (714)
Q Consensus       563 ~~~l~~l~~~~~n~~~yR~~l~~~~------~p~IPflg~~L~  599 (714)
                      +-.+++.+.|      ..+.+.+.+      ..|||++..+++
T Consensus       178 Ai~yEk~LkP------~~k~lneg~~~~~~~~~~~Phl~Pl~~  214 (331)
T 3t6g_A          178 AILYEKKLKP------FLKSLNEGKEGPPLSNTTFPHVLPLIT  214 (331)
T ss_dssp             HHHHHHTHHH------HHHHHHTTCCCSCGGGCSBCCCHHHHH
T ss_pred             HHHHHHHhhH------HHHHHhCCCCCCCCCCCccchHHHHHH
Confidence            7777776544      233344433      138999876654

>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.39  E-value=5e-13  Score=146.17  Aligned_cols=94  Identities=15%  Similarity=0.230  Sum_probs=81.4

Q ss_pred             CcHHHHHHHHHHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhccccccc
Q psy11552         37 PSVPMARAGWVLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        37 ~~~~~~~~~~~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv  115 (714)
                      +...+....+.+...|.+.+ |..|+||++++  ++|++||+|+|+|+||+++..                         
T Consensus        14 ~~~~~~~~~e~lv~~M~~~~~Gv~i~~~~~~~--~~~p~~F~Gsd~V~WL~~~~~-------------------------   66 (424)
T 2pbi_A           14 PRMAFLQKIEALVKDMQNPETGVRMHNQRVLV--TSVPHAMTGGDVLQWITQRLW-------------------------   66 (424)
T ss_dssp             CCCTHHHHHHHHHHHHTCTTTSCCCCCCSSCC--CSSCCCEEHHHHHHHHHHHHT-------------------------
T ss_pred             CcchhhhhHHHHHHHHhCCCCCCCccceeecc--eeCCCccccHHHHHHHHHcCC-------------------------
Confidence            44556688888888887766 77899999999  999999999999999999876                         


Q ss_pred             ceeeEeecCCCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCcc--
Q psy11552        116 KISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQA--  193 (714)
Q Consensus       116 ~~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~--  193 (714)
                                                                        + +++||+.+|+.|+++|+|+||.+.|.  
T Consensus        67 --------------------------------------------------~-~~~EA~~lg~~L~~~Gyi~~v~d~~~~~   95 (424)
T 2pbi_A           67 --------------------------------------------------I-SNLEAQNLGNFIVKYGYIYPLQDPKNLI   95 (424)
T ss_dssp             --------------------------------------------------C-CHHHHHHHHHHHHHTTSEEESSSTTCCS
T ss_pred             --------------------------------------------------C-ChHHHHHHHHHHHHCCCEEeCCcccccc
Confidence                                                              3 66999999999999999999988775  


Q ss_pred             ccCcCceeeeccCcc
Q psy11552        194 FRDKCILYNFWQDKE  208 (714)
Q Consensus       194 F~d~~~~Yrf~~d~~  208 (714)
                      |+|++.||||..++.
T Consensus        96 fk~d~~~Yrfq~py~  110 (424)
T 2pbi_A           96 LKPDSSLYRFQTPYF  110 (424)
T ss_dssp             CCSSSCEEEECCGGG
T ss_pred             ccCCCeeEEeCCccc
Confidence            999999999987654

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.36  E-value=1.4e-12  Score=128.63  Aligned_cols=94  Identities=16%  Similarity=0.215  Sum_probs=84.9

Q ss_pred             HHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccch
Q psy11552        298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGK  377 (714)
Q Consensus       298 ~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGE  377 (714)
                      .....+.|.++++|++++++.+..|+. .+....+++|++|+++|++++.+|+|.+|.|+++..++..+..+++|++|||
T Consensus        66 ~~~~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe  144 (198)
T 2ptm_A           66 NYNCRDLVASVPFFVGADSNFVTRVVT-LLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGE  144 (198)
T ss_dssp             HHHTHHHHHHCGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESC
T ss_pred             HHHHHHHHhcCcchhcCCHHHHHHHHH-hccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEech
Confidence            344567788899999999999999999 5778899999999999999999999999999998744448899999999999


Q ss_pred             hhhccCCCcceeeec
Q psy11552        378 LALVNNAPRLIITSM  392 (714)
Q Consensus       378 laLl~~~pr~atv~A  392 (714)
                      .+++.+.||+++++|
T Consensus       145 ~~~~~~~~~~~~~~a  159 (198)
T 2ptm_A          145 ICLLTRERRVASVKC  159 (198)
T ss_dssp             HHHHHSSCCSSEEEE
T ss_pred             HHHcCCCccceEEEE
Confidence            999999999999988

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.33  E-value=3.9e-12  Score=120.23  Aligned_cols=98  Identities=19%  Similarity=0.250  Sum_probs=85.9

Q ss_pred             CCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCC
Q psy11552        293 RTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAG  372 (714)
Q Consensus       293 r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~G  372 (714)
                      +..-......+.|.++++|++|+++.+..++. .+....+++|++|+++|++++.+|+|++|.|+++..+ ..+..+++|
T Consensus        17 ~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-~~~~~~~~G   94 (160)
T 4f8a_A           17 RADICVHLNRKVFKEHPAFRLASDGCLRALAM-EFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQDD-EVVAILGKG   94 (160)
T ss_dssp             HHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHT-TCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEETT-EEEEEEETT
T ss_pred             HHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHH-hceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEECC-EEEEEecCC
Confidence            33334455667888999999999999999999 6677799999999999999999999999999998854 489999999


Q ss_pred             CccchhhhccC--CCcceeeec
Q psy11552        373 EDFGKLALVNN--APRLIITSM  392 (714)
Q Consensus       373 d~FGElaLl~~--~pr~atv~A  392 (714)
                      ++||+.+++.+  .|+.++++|
T Consensus        95 ~~fG~~~~~~~~~~~~~~~~~a  116 (160)
T 4f8a_A           95 DVFGDVFWKEATLAQSCANVRA  116 (160)
T ss_dssp             CEEECCTTTCSSCCBCSSEEEE
T ss_pred             CEeCcHHHhcCcccceEEEEEE
Confidence            99999999988  688888887

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.33  E-value=3.9e-12  Score=124.65  Aligned_cols=100  Identities=22%  Similarity=0.307  Sum_probs=89.5

Q ss_pred             CCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEE
Q psy11552        292 DRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVT  367 (714)
Q Consensus       292 ~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~  367 (714)
                      .++....+.+.+.|.++++|++|+++++..++. .+..+.+++|++|+++|++++.+|+|++|.|+++... +|   .+.
T Consensus        28 ~~~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~-~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~  106 (187)
T 3gyd_A           28 GGADKYFEEILEIVNKIKLFGDFSNEEVRYLCS-YMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIA  106 (187)
T ss_dssp             EEGGGGHHHHHHHHTTCCSSCCCCHHHHHHHHT-TCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEE
T ss_pred             CccHHHHHHHHHHHhcCHhhhcCCHHHHHHHHH-hcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEE
Confidence            344556778889999999999999999999999 6777799999999999999999999999999998864 22   788


Q ss_pred             EecCCCccchhhhccCCCcceeeec
Q psy11552        368 SLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       368 ~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      .+++|++|||.+++.+.|++++++|
T Consensus       107 ~~~~G~~fGe~~~l~~~~~~~~v~A  131 (187)
T 3gyd_A          107 KVGAGAIIGEMSMIDGMPRSASCVA  131 (187)
T ss_dssp             EEETTCEESHHHHHHCCCCSSEEEE
T ss_pred             EccCCCeeeeHHHhCCCCeeEEEEE
Confidence            9999999999999999999999887

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.30  E-value=4.3e-12  Score=116.99  Aligned_cols=94  Identities=21%  Similarity=0.372  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCc
Q psy11552        295 SEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGED  374 (714)
Q Consensus       295 ~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~  374 (714)
                      .++.....+.|.++++|++|+++++..|+. .+....+++|++|+++|++++.+|+|++|.|.++..+   ...+++|++
T Consensus         3 ~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~---~~~~~~G~~   78 (138)
T 1vp6_A            3 RGDFVRNWQLVAAVPLFQKLGPAVLVEIVR-ALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAF   78 (138)
T ss_dssp             HHHHHHHHHHHTTCGGGGGCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS---CEEECTTCE
T ss_pred             hhhHHHHHHHHHhChhhhcCCHHHHHHHHH-hhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC---cceECCCCE
Confidence            456777888999999999999999999999 5677799999999999999999999999999998765   357899999


Q ss_pred             cchhhhccCCCcceeeec
Q psy11552        375 FGKLALVNNAPRLIITSM  392 (714)
Q Consensus       375 FGElaLl~~~pr~atv~A  392 (714)
                      ||+.+++.+.|+.++++|
T Consensus        79 ~G~~~~~~~~~~~~~~~a   96 (138)
T 1vp6_A           79 FGEMALISGEPRSATVSA   96 (138)
T ss_dssp             ECHHHHHHCCCCSSCEEE
T ss_pred             eeehHhccCCCceeEEEE
Confidence            999999999999999888

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.30  E-value=2.4e-12  Score=118.99  Aligned_cols=89  Identities=17%  Similarity=0.281  Sum_probs=79.2

Q ss_pred             HHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---E---EEEecCCCcc
Q psy11552        303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---C---VTSLYAGEDF  375 (714)
Q Consensus       303 ~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~---v~~l~~Gd~F  375 (714)
                      +.|.++++|++|+++++..++. .+....|++|++|+++|++++.+|+|++|.|+++.... |   .   +..+++|++|
T Consensus         6 ~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f   84 (142)
T 3mdp_A            6 ERLRVYRFFASLTDEQLKDIAL-ISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF   84 (142)
T ss_dssp             TGGGGSHHHHTSCHHHHHHHHH-TEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred             HHHhhCchhccCCHHHHHHHHH-hhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence            3678899999999999999999 56777999999999999999999999999999986432 1   5   8899999999


Q ss_pred             chhhhccCCCcceeeec
Q psy11552        376 GKLALVNNAPRLIITSM  392 (714)
Q Consensus       376 GElaLl~~~pr~atv~A  392 (714)
                      |+.+++.+.|++++++|
T Consensus        85 G~~~~~~~~~~~~~~~a  101 (142)
T 3mdp_A           85 GVSSLIKPYHYTSSARA  101 (142)
T ss_dssp             CGGGSSTTCBCSSEEEE
T ss_pred             chHHHcCCCCceEEEEE
Confidence            99999999999999988

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.30  E-value=4.3e-12  Score=125.69  Aligned_cols=92  Identities=17%  Similarity=0.238  Sum_probs=82.2

Q ss_pred             HHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchh
Q psy11552        299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL  378 (714)
Q Consensus       299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGEl  378 (714)
                      ....+.|.++++|++++++.+..|+. .+....|++|++|+++|++++.+|||.+|.|+++..+ |...++++|++|||.
T Consensus        68 ~~~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~~~-g~~~~l~~G~~fGe~  145 (202)
T 3bpz_A           68 FNCRKLVASMPLFANADPNFVTAMLT-KLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG-NKEMKLSDGSYFGEI  145 (202)
T ss_dssp             HHTHHHHHTCHHHHTSCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCEEEEEEECEEEEECTT-SCCEEEETTCEECHH
T ss_pred             HHHHHHHhcCCchhcCCHHHHHHHHH-hCCceEECCCCEEEECCCcCCeEEEEeccEEEEEECC-CeEEEEcCCCEeccH
Confidence            34456788899999999999999999 5677799999999999999999999999999998644 345689999999999


Q ss_pred             hhccCCCcceeeec
Q psy11552        379 ALVNNAPRLIITSM  392 (714)
Q Consensus       379 aLl~~~pr~atv~A  392 (714)
                      +++.+.||+++++|
T Consensus       146 ~~~~~~~~~~~v~a  159 (202)
T 3bpz_A          146 CLLTRGRRTASVRA  159 (202)
T ss_dssp             HHHHCSBCSSEEEE
T ss_pred             HHhcCCCcccEEEE
Confidence            99999999999987

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.28  E-value=1.3e-11  Score=115.72  Aligned_cols=94  Identities=18%  Similarity=0.245  Sum_probs=84.2

Q ss_pred             HHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCC
Q psy11552        298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGE  373 (714)
Q Consensus       298 ~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd  373 (714)
                      ...+.+.|.++++|.+|+++++..|+. .+....+++|++|+++|++++.+|+|++|.|.++.... |   .+..+++|+
T Consensus         7 ~~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~   85 (154)
T 2z69_A            7 QRVHQQLLQSHHLFEPLSPVQLQELLA-SSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERN   85 (154)
T ss_dssp             HHHHHHHHTTSTTTTTSCHHHHHHHHH-TCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTE
T ss_pred             ChhHHHHhhcChhhcCCCHHHHHHHHh-hCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCC
Confidence            456778899999999999999999999 57777999999999999999999999999999986432 2   688999999


Q ss_pred             ccchhhhccCCC-cceeeec
Q psy11552        374 DFGKLALVNNAP-RLIITSM  392 (714)
Q Consensus       374 ~FGElaLl~~~p-r~atv~A  392 (714)
                      +||+.+++.+.+ +.++++|
T Consensus        86 ~~G~~~~~~~~~~~~~~~~a  105 (154)
T 2z69_A           86 TFAEAMMFMDTPNYVATAQA  105 (154)
T ss_dssp             EESGGGGGSSCSBCSSEEEE
T ss_pred             eeccHhhccCCCCCceEEEE
Confidence            999999999988 8888887

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.27  E-value=2.1e-12  Score=128.84  Aligned_cols=90  Identities=23%  Similarity=0.303  Sum_probs=81.8

Q ss_pred             HHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhhh
Q psy11552        301 IYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLAL  380 (714)
Q Consensus       301 i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGElaL  380 (714)
                      +...+.++++|++++++.+..|+. .+....|++|++|+++||+++++|+|.+|.|+++..+ ..+..+++|++|||.++
T Consensus        73 ~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l~~G~~fGe~~~  150 (212)
T 3ukn_A           73 LNKELLQLPLFESASRGCLRSLSL-IIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLKDN-TVLAILGKGDLIGSDSL  150 (212)
T ss_dssp             CCCGGGGSGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCEEEEEEECCEEEESSS-CEEEEECTTCEEECSCC
T ss_pred             HHHHHHhcHHhhcCCHHHHHHHHH-HhheEEeCCCCEEEECCCcccEEEEEEecEEEEEECC-eEEEEecCCCCcCcHHh
Confidence            344566799999999999999999 6777799999999999999999999999999999755 38999999999999999


Q ss_pred             ccCC--Ccceeeec
Q psy11552        381 VNNA--PRLIITSM  392 (714)
Q Consensus       381 l~~~--pr~atv~A  392 (714)
                      +.+.  ||++|++|
T Consensus       151 ~~~~~~~~~~~v~a  164 (212)
T 3ukn_A          151 TKEQVIKTNANVKA  164 (212)
T ss_dssp             SSSSCCBBCSEEEE
T ss_pred             ccCCCCCcceEEEE
Confidence            9998  99999988

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.25  E-value=9.7e-12  Score=115.75  Aligned_cols=90  Identities=26%  Similarity=0.410  Sum_probs=81.1

Q ss_pred             HHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccch
Q psy11552        302 YEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGK  377 (714)
Q Consensus       302 ~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGE  377 (714)
                      .+.+.++++|.+|+++++..|+. .+....+++|++|+++|++++.+|+|++|.|.++.... |   .+..+++|++||+
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~   82 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRA-SMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGE   82 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESG
T ss_pred             HHHhhhChhhhcCCHHHHHHHHH-hceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEech
Confidence            34678899999999999999999 56777999999999999999999999999999987532 2   6889999999999


Q ss_pred             hhhccCCCcceeeec
Q psy11552        378 LALVNNAPRLIITSM  392 (714)
Q Consensus       378 laLl~~~pr~atv~A  392 (714)
                      .+++.+.|+.++++|
T Consensus        83 ~~~~~~~~~~~~~~a   97 (149)
T 2pqq_A           83 LSLFDPGPRTATGTA   97 (149)
T ss_dssp             GGGTSCEECSSEEEE
T ss_pred             HHhcCCCCcceEEEE
Confidence            999999999999888

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.22  E-value=2.8e-11  Score=122.62  Aligned_cols=93  Identities=29%  Similarity=0.473  Sum_probs=85.4

Q ss_pred             HHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhh
Q psy11552        300 QIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLA  379 (714)
Q Consensus       300 ~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGEla  379 (714)
                      .....+.++++|.++++..+..++. .+....+++|++|+++|++++.+|+|.+|.|+++..+.+.+..+++|++|||.+
T Consensus       122 ~~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~~~~~~l~~g~~fGe~~  200 (246)
T 3of1_A          122 MYDDLLKSMPVLKSLTTYDRAKLAD-ALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQGVINKLKDHDYFGEVA  200 (246)
T ss_dssp             HSHHHHHHCGGGTTCCHHHHHHHHH-TCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTTEEEEEEETTCEECHHH
T ss_pred             HHHHHHhhChhhhcCCHHHHHHHHH-hhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCCceEEEcCCCCcccHHH
Confidence            3455677899999999999999999 667779999999999999999999999999999998877899999999999999


Q ss_pred             hccCCCcceeeecc
Q psy11552        380 LVNNAPRLIITSMV  393 (714)
Q Consensus       380 Ll~~~pr~atv~Ai  393 (714)
                      ++.+.||++|++|+
T Consensus       201 ~~~~~~~~~~v~a~  214 (246)
T 3of1_A          201 LLNDLPRQATVTAT  214 (246)
T ss_dssp             HHHTCBCSSEEEES
T ss_pred             HhCCCCcccEEEEC
Confidence            99999999999983

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.18  E-value=4.3e-11  Score=127.71  Aligned_cols=90  Identities=22%  Similarity=0.358  Sum_probs=82.8

Q ss_pred             HHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EEEEecCCCccchh
Q psy11552        302 YEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKL  378 (714)
Q Consensus       302 ~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v~~l~~Gd~FGEl  378 (714)
                      .+.|.++++|++|+++++..|+. .+...+|++|++|+++||+++++|||++|.|+++..+.+   .+..+++|++|||+
T Consensus        12 ~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~   90 (333)
T 4ava_A           12 VEDLAGMDVFQGCPAEGLVSLAA-SVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEI   90 (333)
T ss_dssp             HHHHTTSGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHH
T ss_pred             HHHHhCCHhHhcCCHHHHHHHHh-hCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHH
Confidence            35788999999999999999999 567789999999999999999999999999999885432   78999999999999


Q ss_pred             hhccCCCcceeeec
Q psy11552        379 ALVNNAPRLIITSM  392 (714)
Q Consensus       379 aLl~~~pr~atv~A  392 (714)
                      +++.+.||++|++|
T Consensus        91 ~l~~~~~~~~~v~A  104 (333)
T 4ava_A           91 ALLRDSPRSATVTT  104 (333)
T ss_dssp             HHHHTCBCSSEEEE
T ss_pred             HhcCCCCceEEEEE
Confidence            99999999999998

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.17  E-value=5.3e-11  Score=118.30  Aligned_cols=87  Identities=22%  Similarity=0.306  Sum_probs=77.2

Q ss_pred             HhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhh
Q psy11552        305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLAL  380 (714)
Q Consensus       305 L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaL  380 (714)
                      |.++++|++|+++++..++. .+....|++|++|+++|++++++|+|.+|.|.++... +|   .+..+++|++||+.++
T Consensus         1 L~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~   79 (216)
T 4ev0_A            1 MKGSPLFHGLAPEEVDLALS-YFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSL   79 (216)
T ss_dssp             ---CGGGTTCCHHHHHHHHT-TCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHH
T ss_pred             CCCChhhcCCCHHHHHHHHH-hheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhh
Confidence            46789999999999999999 5677799999999999999999999999999998752 22   7889999999999999


Q ss_pred             ccCCCcceeeec
Q psy11552        381 VNNAPRLIITSM  392 (714)
Q Consensus       381 l~~~pr~atv~A  392 (714)
                      +.+.|++++++|
T Consensus        80 ~~~~~~~~~~~a   91 (216)
T 4ev0_A           80 LDEGERSASAVA   91 (216)
T ss_dssp             HHCCBCSSEEEE
T ss_pred             cCCCCcceEEEE
Confidence            999999988887

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.16  E-value=3.3e-11  Score=121.03  Aligned_cols=91  Identities=23%  Similarity=0.364  Sum_probs=82.1

Q ss_pred             HHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccc
Q psy11552        301 IYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFG  376 (714)
Q Consensus       301 i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FG  376 (714)
                      +.+.|.++++|.+|+++++..|+. .+....|++|++|+++|++++.+|+|++|.|.++.... |   .+..+++|++||
T Consensus         4 ~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G   82 (227)
T 3d0s_A            4 MDEILARAGIFQGVEPSAIAALTK-QLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFG   82 (227)
T ss_dssp             CHHHHTTSSTTSSCCSSTTHHHHT-TSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES
T ss_pred             HHHHHhcChhhcCCCHHHHHHHHh-hCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEe
Confidence            356789999999999999999999 56677999999999999999999999999999988532 2   688999999999


Q ss_pred             hhhhccCCCcceeeec
Q psy11552        377 KLALVNNAPRLIITSM  392 (714)
Q Consensus       377 ElaLl~~~pr~atv~A  392 (714)
                      +.+++.+.|+.++++|
T Consensus        83 ~~~~~~~~~~~~~~~A   98 (227)
T 3d0s_A           83 ELSIFDPGPRTSSATT   98 (227)
T ss_dssp             CHHHHSCSCCSSEEEE
T ss_pred             eHHHcCCCCceeEEEE
Confidence            9999999999999887

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.15  E-value=6.3e-11  Score=119.73  Aligned_cols=93  Identities=20%  Similarity=0.262  Sum_probs=83.9

Q ss_pred             HHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCc
Q psy11552        299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGED  374 (714)
Q Consensus       299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~  374 (714)
                      ....+.|.++++|.+|+++++..|+. .+....|++|++|+++|++++++|+|++|.|.++... +|   .+..+++|++
T Consensus         7 ~~~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~   85 (237)
T 3fx3_A            7 EAQKAIARNSLLIRSLPEQHVDALLS-QAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGES   85 (237)
T ss_dssp             HHHHHHHTTSHHHHTSCHHHHHHHHT-TCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEE
T ss_pred             HHHHHHHhCCHhhccCCHHHHHHHHh-hCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCE
Confidence            35667899999999999999999999 5677799999999999999999999999999998853 22   7889999999


Q ss_pred             cchhhhccCCCcceeeec
Q psy11552        375 FGKLALVNNAPRLIITSM  392 (714)
Q Consensus       375 FGElaLl~~~pr~atv~A  392 (714)
                      ||+.+++.+.|+.++++|
T Consensus        86 ~G~~~~~~~~~~~~~~~a  103 (237)
T 3fx3_A           86 FGEAVALRNTPYPVSAEA  103 (237)
T ss_dssp             ECHHHHHHTCCCSSEEEE
T ss_pred             echHHHhcCCCCCceEEE
Confidence            999999999999888887

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.14  E-value=4.7e-11  Score=120.24  Aligned_cols=90  Identities=20%  Similarity=0.293  Sum_probs=81.5

Q ss_pred             HHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccch
Q psy11552        302 YEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGK  377 (714)
Q Consensus       302 ~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGE  377 (714)
                      .+.|.++++|.+|+++++..++. .+....|++|++|+++|++++++|+|++|.|.++... +|   .+..+++|++||+
T Consensus         5 ~~~L~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~   83 (231)
T 3e97_A            5 LDDLKRSPLFQNVPEDAMREALK-VVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGE   83 (231)
T ss_dssp             HHHHHTSGGGTTCCHHHHHHHHH-TEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEEST
T ss_pred             HHHHhcChhhccCCHHHHHHHHH-hcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEee
Confidence            56889999999999999999999 5677799999999999999999999999999998854 22   6889999999999


Q ss_pred             hhhccCCCcceeeec
Q psy11552        378 LALVNNAPRLIITSM  392 (714)
Q Consensus       378 laLl~~~pr~atv~A  392 (714)
                      .+++.+.|+.++++|
T Consensus        84 ~~~~~~~~~~~~~~a   98 (231)
T 3e97_A           84 TAVLAHQERSASVRA   98 (231)
T ss_dssp             TTTTCCCCCCEEEEE
T ss_pred             HHHhCCCCceEEEEE
Confidence            999999999888877

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.14  E-value=2.2e-11  Score=112.16  Aligned_cols=88  Identities=14%  Similarity=0.181  Sum_probs=75.6

Q ss_pred             HHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---E--EEEecCCCccchh
Q psy11552        304 ELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---C--VTSLYAGEDFGKL  378 (714)
Q Consensus       304 ~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~--v~~l~~Gd~FGEl  378 (714)
                      .|.++++|++|+++++..|+. .+....+++|++|+++||+++.+|+|++|.|++....+|   .  +..+++|++|||+
T Consensus         7 ~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~   85 (137)
T 1wgp_A            7 GVRRVPLFENMDERLLDAICE-RLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             SCSSCSGGGSCCHHHHHHHHH-HCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHcCcchhhCCHHHHHHHHH-HheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHH
Confidence            577899999999999999999 567779999999999999999999999999997644333   3  3499999999999


Q ss_pred             hh---ccCCC------cceeeec
Q psy11552        379 AL---VNNAP------RLIITSM  392 (714)
Q Consensus       379 aL---l~~~p------r~atv~A  392 (714)
                      ++   +.+.|      ++++++|
T Consensus        86 ~l~~~~~~~~~~~~~~~~~~~~A  108 (137)
T 1wgp_A           86 LLTWALDPKSGSNLPSSTRTVKA  108 (137)
T ss_dssp             HHHHHHCSSCCSSSCBCSSEEEE
T ss_pred             HHHHHhccccccccccceeEEEE
Confidence            96   78875      5678887

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.14  E-value=1.3e-10  Score=117.48  Aligned_cols=94  Identities=15%  Similarity=0.227  Sum_probs=83.1

Q ss_pred             HHHHHHHhCCccCCCCCHHHHHHHHhhc-ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCC
Q psy11552        299 EQIYEELLHLKPLHHLSNSVRRELAGVV-MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGE  373 (714)
Q Consensus       299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~-~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd  373 (714)
                      ......+.++++|.+|+++++..|+... +....|++|++|+++|++++.+|+|++|.|.++.... |   .+..+++|+
T Consensus        14 ~~~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~   93 (232)
T 1zyb_A           14 ETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPY   93 (232)
T ss_dssp             HHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSE
T ss_pred             HHHHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCC
Confidence            4566778899999999999999999931 6777999999999999999999999999999987432 2   788999999


Q ss_pred             ccchhhhccCCC-cceeeec
Q psy11552        374 DFGKLALVNNAP-RLIITSM  392 (714)
Q Consensus       374 ~FGElaLl~~~p-r~atv~A  392 (714)
                      +||+.+++.+.| +.++++|
T Consensus        94 ~fG~~~~~~~~~~~~~~~~A  113 (232)
T 1zyb_A           94 LIEPQSLFGMNTNYASSYVA  113 (232)
T ss_dssp             EECGGGGSSSCCBCSSEEEE
T ss_pred             eeeehHHhCCCCCCceEEEE
Confidence            999999999988 8888887

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.13  E-value=1.1e-10  Score=114.26  Aligned_cols=88  Identities=16%  Similarity=0.231  Sum_probs=78.2

Q ss_pred             HHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchh-
Q psy11552        304 ELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKL-  378 (714)
Q Consensus       304 ~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGEl-  378 (714)
                      .+.++++|.+|+++++..++. .+..+.+++|++|+++||+++++|+|++|.|+++..+ +|   .+..++||++|||+ 
T Consensus         8 l~~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~   86 (194)
T 3dn7_A            8 LINHIRKFIFLTDEDAGTLSA-FFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYM   86 (194)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHT-TCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHH-hCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehH
Confidence            456688999999999999999 5677799999999999999999999999999998853 23   78889999999997 


Q ss_pred             hhccCCCcceeeec
Q psy11552        379 ALVNNAPRLIITSM  392 (714)
Q Consensus       379 aLl~~~pr~atv~A  392 (714)
                      +++.+.|+.++++|
T Consensus        87 ~~~~~~~~~~~~~a  100 (194)
T 3dn7_A           87 AFQKQQPADFYIQS  100 (194)
T ss_dssp             HHHHTCBCSSEEEE
T ss_pred             HHhcCCCCceEEEE
Confidence            78899999888887

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.11  E-value=3.3e-10  Score=118.13  Aligned_cols=91  Identities=25%  Similarity=0.339  Sum_probs=81.7

Q ss_pred             HHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC--c---eEEEEecCCCcc
Q psy11552        301 IYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG--K---GCVTSLYAGEDF  375 (714)
Q Consensus       301 i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~--~---~~v~~l~~Gd~F  375 (714)
                      ....+.++++|.++++..+..++. .+....+++|++|+++|++++.+|+|.+|.|.+....  +   ..+..+++|++|
T Consensus       155 ~~~~l~~~~lf~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~f  233 (291)
T 2qcs_B          155 YEEFLSKVSILESLDKWERLTVAD-ALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYF  233 (291)
T ss_dssp             HHHHHHTCGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEE
T ss_pred             HHHHHhhchHhhhCCHHHHHHHHh-hcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEe
Confidence            445677899999999999999999 5677799999999999999999999999999998742  1   278999999999


Q ss_pred             chhhhccCCCcceeeec
Q psy11552        376 GKLALVNNAPRLIITSM  392 (714)
Q Consensus       376 GElaLl~~~pr~atv~A  392 (714)
                      ||.+++.+.||++|++|
T Consensus       234 Ge~~ll~~~~~~~tv~a  250 (291)
T 2qcs_B          234 GEIALLMNRPKAATVVA  250 (291)
T ss_dssp             CSGGGTCCCCCSSEEEE
T ss_pred             cHHHHcCCCCcceEEEE
Confidence            99999999999999988

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.11  E-value=1e-10  Score=122.74  Aligned_cols=93  Identities=27%  Similarity=0.395  Sum_probs=84.9

Q ss_pred             HHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC--ce---EEEEecCCC
Q psy11552        299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG--KG---CVTSLYAGE  373 (714)
Q Consensus       299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~--~~---~v~~l~~Gd  373 (714)
                      ......+.++++|..++++++..++. .+....+++|++|+++||+++.+|+|++|.|.++...  +|   .+..+++|+
T Consensus       153 ~~~~~~l~~~~~f~~l~~~~l~~l~~-~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~  231 (299)
T 3shr_A          153 TEYMEFLKSVPTFQSLPEEILSKLAD-VLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGD  231 (299)
T ss_dssp             HHHHHHHTTSHHHHHSCHHHHHHHTT-TCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTC
T ss_pred             HHHHHHHhhCHHhhhCCHHHHHHHHH-hccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCC
Confidence            44667888999999999999999999 5677799999999999999999999999999999865  23   788999999


Q ss_pred             ccchhhhccCCCcceeeec
Q psy11552        374 DFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       374 ~FGElaLl~~~pr~atv~A  392 (714)
                      +|||.+++.+.||++|++|
T Consensus       232 ~fGe~~ll~~~~~~~tv~a  250 (299)
T 3shr_A          232 WFGEKALQGEDVRTANVIA  250 (299)
T ss_dssp             EECGGGGSSSEECSSEEEE
T ss_pred             EeChHHHhCCCCcceEEEE
Confidence            9999999999999999998

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.09  E-value=6.3e-11  Score=118.70  Aligned_cols=91  Identities=19%  Similarity=0.263  Sum_probs=82.2

Q ss_pred             HHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccc
Q psy11552        301 IYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFG  376 (714)
Q Consensus       301 i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FG  376 (714)
                      +.+.|.++++|++|+++++..++. .+....|++|++|+++|++++++|+|++|.|.++.... |   .+..++||++||
T Consensus         7 ~~~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G   85 (227)
T 3dkw_A            7 HQQLLQSHHLFEPLSPVQLQELLA-SSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFA   85 (227)
T ss_dssp             SHHHHTTSTTTSSSCHHHHHHHHT-SCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEES
T ss_pred             HHHHHhcChhhcCCCHHHHHHHHh-hCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEee
Confidence            456889999999999999999999 67788999999999999999999999999999987432 2   688899999999


Q ss_pred             hhhhccCCC-cceeeec
Q psy11552        377 KLALVNNAP-RLIITSM  392 (714)
Q Consensus       377 ElaLl~~~p-r~atv~A  392 (714)
                      +.+++.+.| +.++++|
T Consensus        86 ~~~~~~~~~~~~~~~~a  102 (227)
T 3dkw_A           86 EAMMFMDTPNYVATAQA  102 (227)
T ss_dssp             CTTTTTTCSBCSSCEEE
T ss_pred             eHHhcCCCCCCceEEEE
Confidence            999999999 8888877

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.09  E-value=2.3e-10  Score=113.93  Aligned_cols=89  Identities=10%  Similarity=0.189  Sum_probs=79.2

Q ss_pred             HHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCc--cc
Q psy11552        303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGED--FG  376 (714)
Q Consensus       303 ~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~--FG  376 (714)
                      +.|.++++|.+|+++++..++. .+....|++|++|+++|++++++|+|++|.|.++.... |   .+..++||++  ||
T Consensus         3 ~~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g   81 (220)
T 3dv8_A            3 SFENYFPLWNDLNTAQKKLISD-NLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLS   81 (220)
T ss_dssp             --CCSCGGGGTSCHHHHHHHHT-TCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGG
T ss_pred             chHHhChhhhcCCHHHHHHHHh-hCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehh
Confidence            5678899999999999999999 56777999999999999999999999999999987532 2   6788999999  89


Q ss_pred             hhhhccCCCcceeeec
Q psy11552        377 KLALVNNAPRLIITSM  392 (714)
Q Consensus       377 ElaLl~~~pr~atv~A  392 (714)
                      +.+++.+.|+.++++|
T Consensus        82 ~~~~~~~~~~~~~~~a   97 (220)
T 3dv8_A           82 ASCIMRSIQFEVTIEA   97 (220)
T ss_dssp             GGGGCTTCCCCCEEEE
T ss_pred             HHHHhCCCCCceEEEE
Confidence            9999999999888877

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.08  E-value=2.5e-10  Score=114.58  Aligned_cols=91  Identities=18%  Similarity=0.263  Sum_probs=69.7

Q ss_pred             HHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccc
Q psy11552        301 IYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFG  376 (714)
Q Consensus       301 i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FG  376 (714)
                      +...+.+.++|.+|+++++..++. .+....|++|++|+++|++++++|+|++|.|.++... +|   .+..+++|++||
T Consensus         9 ~~~~lr~~~lf~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G   87 (230)
T 3iwz_A            9 VTTTVRNATPSLTLDAGTIERFLA-HSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVG   87 (230)
T ss_dssp             -------------CCHHHHHHHHT-TSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEES
T ss_pred             ehhhhhhcchhccCCHHHHHHHHH-hCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEE
Confidence            455788899999999999999999 5677799999999999999999999999999998743 22   788999999999


Q ss_pred             hhhhccCC-Ccceeeec
Q psy11552        377 KLALVNNA-PRLIITSM  392 (714)
Q Consensus       377 ElaLl~~~-pr~atv~A  392 (714)
                      +.+++.+. |++++++|
T Consensus        88 ~~~~~~~~~~~~~~~~a  104 (230)
T 3iwz_A           88 EMGLFIESDTREVILRT  104 (230)
T ss_dssp             CGGGTSCCSBCCSEEEE
T ss_pred             ehhhhcCCCCceeEEEE
Confidence            99999875 78888776

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.03  E-value=2.3e-10  Score=115.18  Aligned_cols=85  Identities=15%  Similarity=0.191  Sum_probs=75.9

Q ss_pred             CCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhcc
Q psy11552        307 HLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVN  382 (714)
Q Consensus       307 ~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~  382 (714)
                      .+++|++|+++++..|+. ......|++|++|+++|++++.+|+|++|.|.++.... |   .+..++||++||+.+++.
T Consensus        14 ~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~   92 (232)
T 2gau_A           14 LRDVWSLLNEEERELLDK-EIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA   92 (232)
T ss_dssp             SHHHHTTCCHHHHHHHHH-HCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred             ccHhhhcCCHHHHHHHHh-hCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence            578999999999999999 66777999999999999999999999999999986422 2   789999999999999999


Q ss_pred             CCCcceeeec
Q psy11552        383 NAPRLIITSM  392 (714)
Q Consensus       383 ~~pr~atv~A  392 (714)
                      +.|+.++++|
T Consensus        93 ~~~~~~~~~A  102 (232)
T 2gau_A           93 EETCSSTAIA  102 (232)
T ss_dssp             TSCCSSEEEE
T ss_pred             CCCcceEEEE
Confidence            9999988887

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.02  E-value=6.1e-10  Score=123.05  Aligned_cols=89  Identities=29%  Similarity=0.411  Sum_probs=79.9

Q ss_pred             HHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-------e---EEEEecCC
Q psy11552        303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-------G---CVTSLYAG  372 (714)
Q Consensus       303 ~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-------~---~v~~l~~G  372 (714)
                      ..+.++++|..|++.++..|+. .+....|++|++|+++|+.++++|||.+|.|.|+....       |   .+..+++|
T Consensus       267 ~~L~~v~lf~~Ls~~el~~L~~-~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~~G  345 (416)
T 3tnp_B          267 SFIESLPFLKSLEVSERLKVVD-VIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCFRG  345 (416)
T ss_dssp             SSGGGCGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEECTT
T ss_pred             HHHhhchHhhcCCHHHHHHHHh-hceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeCCC
Confidence            3667799999999999999999 56777999999999999999999999999999987532       2   78999999


Q ss_pred             CccchhhhccCCCcceeeec
Q psy11552        373 EDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       373 d~FGElaLl~~~pr~atv~A  392 (714)
                      ++|||++++.+.||++||+|
T Consensus       346 ~~fGE~all~~~~r~~tv~A  365 (416)
T 3tnp_B          346 QYFGELALVTNKPRAASAHA  365 (416)
T ss_dssp             CEESGGGGTCCSCCSSEEEE
T ss_pred             CEecHHHHhCCCCceeEEEE
Confidence            99999999999999999998

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.02  E-value=2.5e-10  Score=124.70  Aligned_cols=92  Identities=27%  Similarity=0.347  Sum_probs=82.5

Q ss_pred             HHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc--e---EEEEecCCCc
Q psy11552        300 QIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK--G---CVTSLYAGED  374 (714)
Q Consensus       300 ~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~--~---~v~~l~~Gd~  374 (714)
                      .....+.++++|..|++.++..|+. .+....|++|++|+++|+.++++|||.+|.|.++....  +   .+..+++|++
T Consensus       245 ~~~~~L~~v~~f~~Ls~~el~~l~~-~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~  323 (381)
T 4din_B          245 MYEEFLSKVSILESLEKWERLTVAD-ALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDY  323 (381)
T ss_dssp             HHHHHHHHCSTTTTCCTTHHHHHHT-TCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCE
T ss_pred             HHHHHhhhhHHHHhccHHHHHHHHH-hhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCE
Confidence            3455778899999999999999999 56667999999999999999999999999999988531  1   6899999999


Q ss_pred             cchhhhccCCCcceeeec
Q psy11552        375 FGKLALVNNAPRLIITSM  392 (714)
Q Consensus       375 FGElaLl~~~pr~atv~A  392 (714)
                      |||++++.+.||++||+|
T Consensus       324 fGe~all~~~~r~~tv~A  341 (381)
T 4din_B          324 FGEIALLLNRPRAATVVA  341 (381)
T ss_dssp             ECTTGGGSCCBCSSEEEE
T ss_pred             echHHHhCCCCceeEEEE
Confidence            999999999999999998

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=98.94  E-value=1.7e-09  Score=106.82  Aligned_cols=83  Identities=22%  Similarity=0.293  Sum_probs=70.6

Q ss_pred             ccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhhccCC
Q psy11552        309 KPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLALVNNA  384 (714)
Q Consensus       309 ~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaLl~~~  384 (714)
                      .+++.++++++..++. .+....|++|++|+++|++++++|+|++|.|.++... +|   .+..++||++||+.+++.+.
T Consensus         2 ~l~~~l~~~~l~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~   80 (210)
T 3ryp_A            2 VLGKPQTDPTLEWFLS-HCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG   80 (210)
T ss_dssp             -----CCCHHHHHHHT-TSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTT
T ss_pred             cCCCcCCHHHHHHHHH-hcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCC
Confidence            4678899999999999 6677799999999999999999999999999998753 23   78889999999999999988


Q ss_pred             -Ccceeeec
Q psy11552        385 -PRLIITSM  392 (714)
Q Consensus       385 -pr~atv~A  392 (714)
                       |+.++++|
T Consensus        81 ~~~~~~~~a   89 (210)
T 3ryp_A           81 QERSAWVRA   89 (210)
T ss_dssp             CBCSSEEEE
T ss_pred             CCceEEEEE
Confidence             78888877

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=98.88  E-value=4.3e-09  Score=103.62  Aligned_cols=78  Identities=22%  Similarity=0.333  Sum_probs=68.2

Q ss_pred             CCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCC----C
Q psy11552        314 LSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNA----P  385 (714)
Q Consensus       314 Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~----p  385 (714)
                      |+++++..|+. .+....|++|++|+++|++++.+|+|++|.|.++.... |   .+..+++|++||+.+++.+.    |
T Consensus         1 l~~~~l~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~   79 (207)
T 2oz6_A            1 MKLKHLDKLLA-HCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQE   79 (207)
T ss_dssp             CCHHHHHHHHH-SSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CB
T ss_pred             CCHHHHHHHHh-hcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCC
Confidence            68899999999 67777999999999999999999999999999987532 2   78899999999999999988    7


Q ss_pred             cceeeec
Q psy11552        386 RLIITSM  392 (714)
Q Consensus       386 r~atv~A  392 (714)
                      +.++++|
T Consensus        80 ~~~~~~A   86 (207)
T 2oz6_A           80 RSAWVRA   86 (207)
T ss_dssp             CCSEEEE
T ss_pred             cceEEEE
Confidence            8888877

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=98.88  E-value=3.1e-09  Score=109.41  Aligned_cols=82  Identities=22%  Similarity=0.303  Sum_probs=68.8

Q ss_pred             cCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhhccCC-
Q psy11552        310 PLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLALVNNA-  384 (714)
Q Consensus       310 ~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaLl~~~-  384 (714)
                      ++..|+++++..|+. .+....|++|++|+++|++++.+|+|++|.|.++... +|   .+..+++|++||+.+++.+. 
T Consensus        53 ~~~~l~~~~l~~l~~-~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~  131 (260)
T 3kcc_A           53 LGKPQTDPTLEWFLS-HCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ  131 (260)
T ss_dssp             ------CHHHHHHHT-TSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred             HcCCCCHHHHHHHHh-hCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCC
Confidence            446799999999999 6677799999999999999999999999999998753 23   78899999999999999988 


Q ss_pred             Ccceeeec
Q psy11552        385 PRLIITSM  392 (714)
Q Consensus       385 pr~atv~A  392 (714)
                      |++++++|
T Consensus       132 ~~~~~~~A  139 (260)
T 3kcc_A          132 ERSAWVRA  139 (260)
T ss_dssp             BCCSEEEE
T ss_pred             CCceEEEE
Confidence            88888877

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=98.78  E-value=4.4e-09  Score=104.67  Aligned_cols=85  Identities=18%  Similarity=0.116  Sum_probs=66.8

Q ss_pred             CCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhhcc
Q psy11552        307 HLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLALVN  382 (714)
Q Consensus       307 ~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaLl~  382 (714)
                      .-|+|...++++...++. .+..++|++|++|+++|++++.+|+|++|.|.++... +|   .+..+++|++||+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~   81 (213)
T 1o5l_A            3 SDKIHHHHHHMDLKKLLP-CGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFS   81 (213)
T ss_dssp             ----------CCGGGGGG-GSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTS
T ss_pred             ccccchhhccCCHHHHhc-ccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhc
Confidence            457899999999999999 6777799999999999999999999999999998753 22   688999999999999998


Q ss_pred             CC-Ccceeeec
Q psy11552        383 NA-PRLIITSM  392 (714)
Q Consensus       383 ~~-pr~atv~A  392 (714)
                      +. |+.++++|
T Consensus        82 ~~~~~~~~~~A   92 (213)
T 1o5l_A           82 SEPRFPVNVVA   92 (213)
T ss_dssp             SSCBCSSEEEE
T ss_pred             CCCCceEEEEE
Confidence            76 88888877

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=98.78  E-value=2.7e-09  Score=106.47  Aligned_cols=81  Identities=19%  Similarity=0.182  Sum_probs=71.2

Q ss_pred             HHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EEEEecCCCccchhhh
Q psy11552        304 ELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLAL  380 (714)
Q Consensus       304 ~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v~~l~~Gd~FGElaL  380 (714)
                      .|.++++|.+|+++++..++. .+....|++|++|+++|++++.+|+|++|.|.++...+|   .+..++||++||+   
T Consensus         5 ~l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~---   80 (220)
T 2fmy_A            5 RLTDTNLLEVLNSEEYSGVLK-EFREQRYSKKAILYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT---   80 (220)
T ss_dssp             CSCSSCHHHHTTSGGGTTTGG-GSEEEEECTTCEEECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES---
T ss_pred             hhhcChhhhcCCHHHHHHHHH-hhheeEeCCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC---
Confidence            567899999999999999999 577779999999999999999999999999999654433   6889999999999   


Q ss_pred             ccCCCcceeeec
Q psy11552        381 VNNAPRLIITSM  392 (714)
Q Consensus       381 l~~~pr~atv~A  392 (714)
                          |+.++++|
T Consensus        81 ----~~~~~~~A   88 (220)
T 2fmy_A           81 ----HTRAFIQA   88 (220)
T ss_dssp             ----CSSSEEEE
T ss_pred             ----ccceEEEE
Confidence                67777766

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=98.71  E-value=4e-09  Score=105.49  Aligned_cols=80  Identities=11%  Similarity=0.157  Sum_probs=69.5

Q ss_pred             HhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EEEEecCCCccchhhhc
Q psy11552        305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKLALV  381 (714)
Q Consensus       305 L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v~~l~~Gd~FGElaLl  381 (714)
                      |.++++|++|+++++..|+. .+....|++|++|+++|++++++|+|++|.|.++...+|   .+..++||++||     
T Consensus         2 l~~~~~f~~l~~~~~~~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-----   75 (222)
T 1ft9_A            2 PPRFNIANVLLSPDGETFFR-GFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-----   75 (222)
T ss_dssp             CCCCCTHHHHTSTTTTTTTT-TCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-----
T ss_pred             cccchhhhcCCHHHHHHHHh-hCcEEEECCCCEEECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-----
Confidence            56789999999999999999 577779999999999999999999999999999743333   688999999999     


Q ss_pred             cCCCcceeeec
Q psy11552        382 NNAPRLIITSM  392 (714)
Q Consensus       382 ~~~pr~atv~A  392 (714)
                        .|++++++|
T Consensus        76 --~~~~~~~~A   84 (222)
T 1ft9_A           76 --MHSGCLVEA   84 (222)
T ss_dssp             --SCSSCEEEE
T ss_pred             --CCCCEEEEE
Confidence              567777666

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=98.66  E-value=3.3e-09  Score=114.47  Aligned_cols=87  Identities=22%  Similarity=0.392  Sum_probs=1.0

Q ss_pred             HHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchhhhc
Q psy11552        302 YEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALV  381 (714)
Q Consensus       302 ~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGElaLl  381 (714)
                      .+.+.++++|++++++.+++++. .+....+++|++|++|||+++++|+|.+|.|+++..+   ...+++|++|||.+++
T Consensus       227 ~~~l~~~~lf~~ls~~~l~~l~~-~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~---~~~l~~G~~fGe~~~l  302 (355)
T 3beh_A          227 WQLVAAVPLFQKLGPAVLVEIVR-ALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEMALI  302 (355)
T ss_dssp             HC------------------------------------------------------------------------------
T ss_pred             chhhhcccccccCCHHHHHHHHH-hceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC---eeEECCCCEEeehHHh
Confidence            45678899999999999999999 5677799999999999999999999999999998765   3589999999999999


Q ss_pred             cCCCcceeeec
Q psy11552        382 NNAPRLIITSM  392 (714)
Q Consensus       382 ~~~pr~atv~A  392 (714)
                      .+.||+++++|
T Consensus       303 ~~~~~~~~~~A  313 (355)
T 3beh_A          303 SGEPRSATVSA  313 (355)
T ss_dssp             -----------
T ss_pred             CCCCcceEEEE
Confidence            99999999988

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=98.66  E-value=2e-08  Score=102.33  Aligned_cols=84  Identities=17%  Similarity=0.158  Sum_probs=72.4

Q ss_pred             HhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhh
Q psy11552        305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLAL  380 (714)
Q Consensus       305 L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaL  380 (714)
                      +....+|..|+++++..|+. .+....|++|++|+++|++++.+|+|++|.|.++... +|   .+..++||++||+  +
T Consensus        11 ~~~~~p~~~l~~~~l~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~   87 (250)
T 3e6c_C           11 CGAIIPDNFFPIEKLRNYTQ-MGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--L   87 (250)
T ss_dssp             CCCSSSBSCSCCGGGGGGGG-GSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--C
T ss_pred             hhhccchhhCCHHHHHHHHh-hCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--e
Confidence            44566779999999999999 5778799999999999999999999999999998853 22   7889999999999  6


Q ss_pred             ccCCCcceeeec
Q psy11552        381 VNNAPRLIITSM  392 (714)
Q Consensus       381 l~~~pr~atv~A  392 (714)
                      +.+. +.++++|
T Consensus        88 l~~~-~~~~~~A   98 (250)
T 3e6c_C           88 YPTG-NNIYATA   98 (250)
T ss_dssp             SCCS-CCEEEEE
T ss_pred             cCCC-CceEEEE
Confidence            7776 7777766

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=98.61  E-value=5.1e-08  Score=95.39  Aligned_cols=62  Identities=19%  Similarity=0.363  Sum_probs=56.1

Q ss_pred             EeecCCCEEEccCCcCCeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhhccCCCcceeeec
Q psy11552        330 AHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       330 ~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      ++|++|++|+++|++++.+|+|++|.|.++... +|   .+..++||++||| +++.+.|+.++++|
T Consensus         2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A   67 (195)
T 3b02_A            2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEA   67 (195)
T ss_dssp             EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEE
T ss_pred             eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEE
Confidence            468999999999999999999999999998753 22   6889999999999 99999999999987

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=98.57  E-value=7.7e-08  Score=97.29  Aligned_cols=80  Identities=10%  Similarity=0.096  Sum_probs=64.8

Q ss_pred             CCCCHHHHHHHHhh-cceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCCCc
Q psy11552        312 HHLSNSVRRELAGV-VMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNAPR  386 (714)
Q Consensus       312 ~~Ls~~~l~~L~~~-~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~pr  386 (714)
                      ++|+++++.+++.. ....++|++|++|+++||+++.+|+|++|.|.++.... |   .+..+ +|++||+++++.+.++
T Consensus         2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~   80 (238)
T 2bgc_A            2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS   80 (238)
T ss_dssp             --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred             CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence            47889999998852 36677899999999999999999999999999987532 2   67777 9999999999988864


Q ss_pred             --ceeeec
Q psy11552        387 --LIITSM  392 (714)
Q Consensus       387 --~atv~A  392 (714)
                        ..++.|
T Consensus        81 ~~~~~~~a   88 (238)
T 2bgc_A           81 VGYYNLEV   88 (238)
T ss_dssp             SCCCEEEE
T ss_pred             CcceeEEE
Confidence              445544

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=98.50  E-value=1.9e-07  Score=94.76  Aligned_cols=76  Identities=24%  Similarity=0.383  Sum_probs=63.3

Q ss_pred             HHHHHHHHhhcce---EEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCCC--c
Q psy11552        316 NSVRRELAGVVMF---EAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNAP--R  386 (714)
Q Consensus       316 ~~~l~~L~~~~~~---~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~p--r  386 (714)
                      ++.++.|+. ...   .+.|++|++|+++|++++.+|+|++|.|+++.... |   .+..++||++||+.+++.+.|  +
T Consensus        30 ~~~l~~L~~-~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~  108 (243)
T 3la7_A           30 ANVFRQMAT-GAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDR  108 (243)
T ss_dssp             HHHHHHHCC-SSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBC
T ss_pred             HHHHHHHhh-ccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcc
Confidence            666777777 445   67999999999999999999999999999987532 2   788899999999999998876  4


Q ss_pred             ceeeec
Q psy11552        387 LIITSM  392 (714)
Q Consensus       387 ~atv~A  392 (714)
                      .++++|
T Consensus       109 ~~~~~A  114 (243)
T 3la7_A          109 FYHAVA  114 (243)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            466655

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=98.37  E-value=3.2e-07  Score=90.12  Aligned_cols=65  Identities=17%  Similarity=0.314  Sum_probs=57.0

Q ss_pred             ceEEeecCCCEEEccCCcC--CeEEEEEEeEEEEEEeC-ce---EEEEecCCCccchhhhccCCCcceeeec
Q psy11552        327 MFEAHPRKGEILFHQGDEG--KSWYIIIQGSVDVVIYG-KG---CVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       327 ~~~~~~~~G~iI~~qGd~g--~~~YiI~~G~V~V~~~~-~~---~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      +....|++|++|+++|+++  +.+|+|++|.|.++... +|   .+..++||++||+ +++.+.|+.++++|
T Consensus         5 ~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A   75 (202)
T 2zcw_A            5 RETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEA   75 (202)
T ss_dssp             -CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEE
T ss_pred             ceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEE
Confidence            4456899999999999999  99999999999998753 22   6889999999999 99999999998888

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=97.71  E-value=8.2e-05  Score=72.28  Aligned_cols=137  Identities=18%  Similarity=0.161  Sum_probs=86.0

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+++|++++.+|+|.+|.+++....    ...+..+++|+.||+ +++.+.|+.              .++.+ .+++.+
T Consensus        10 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~--------------~~~~A-~~~~~v   73 (195)
T 3b02_A           10 IYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYR--------------YTAEA-MTEAVV   73 (195)
T ss_dssp             EECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCS--------------SEEEE-SSSEEE
T ss_pred             EECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCce--------------eEEEE-CCcEEE
Confidence            6789999999999999999998732    234668899999999 999988877              67777 567788


Q ss_pred             eeecCCccccccchhhhh-----hhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh--------cCChHHHHH
Q psy11552        469 KFRGPNRFQQITANLDVF-----LRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE--------YRNINALFA  535 (714)
Q Consensus       469 ~~l~r~~f~~~tpnI~~~-----i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~--------l~Nf~s~~a  535 (714)
                      ..+++..|.   |.+...     ..+......|+..  +...+..+|.  ...++.++...-.        +.==..-.|
T Consensus        74 ~~i~~~~~~---p~~~~~~~~~l~~~l~~~~~~~~~--l~~~~~~~Rl--~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA  146 (195)
T 3b02_A           74 QGLEPRAMD---HEALHRVARNLARQMRRVQAYEAH--LQTGELRARI--ARYLLFLADTPLSARDRQGIYVTVSHEEIA  146 (195)
T ss_dssp             EEECGGGCC---HHHHHHHHHHHHHHHHHHHHHHHH--HTSSCHHHHH--HHHHHHHTTSTTEEEETTEEEEECCHHHHH
T ss_pred             EEEcHHHcC---HHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHH--HHHHHHHHHHcCCCCCCCeeeccCCHHHHH
Confidence            889999887   444321     2333333344332  3344555543  3334444332211        110134445


Q ss_pred             HHHhcCchhhhchHHhh
Q psy11552        536 VLMGLSNVAVSRLSLTW  552 (714)
Q Consensus       536 I~~gL~~~~V~RLk~Tw  552 (714)
                      =+.|++-..|+|.-+.|
T Consensus       147 ~~lg~sr~tvsR~l~~L  163 (195)
T 3b02_A          147 DATASIRESVSKVLADL  163 (195)
T ss_dssp             HTTTSCHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHH
Confidence            55566666676654444

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=97.70  E-value=2.2e-05  Score=76.74  Aligned_cols=73  Identities=23%  Similarity=0.326  Sum_probs=60.4

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      |+++|+.++.+|+|.+|.+++.......+..+++|++||+.+++.+.|+.              .++.+ .+++.++.++
T Consensus       105 I~~~G~~~~~ly~I~~G~v~~~~~~g~~~~~l~~G~~fGe~~~~~~~~~~--------------~~~~a-~~~~~l~~i~  169 (198)
T 2ptm_A          105 VIQEGTFGDRMFFIQQGIVDIIMSDGVIATSLSDGSYFGEICLLTRERRV--------------ASVKC-ETYCTLFSLS  169 (198)
T ss_dssp             EECTTSCCSEEEEEEECCEEEECTTSCEEEEECTTCEESCHHHHHSSCCS--------------SEEEE-SSCEEEEEEE
T ss_pred             EEECCCcCcEEEEEEeCEEEEEecCCeEEEEecCCCEechHHHcCCCccc--------------eEEEE-eeEEEEEEEe
Confidence            78899999999999999999987444467789999999999999998887              67777 5677777888


Q ss_pred             CCcccccc
Q psy11552        473 PNRFQQIT  480 (714)
Q Consensus       473 r~~f~~~t  480 (714)
                      ++.|....
T Consensus       170 ~~~f~~ll  177 (198)
T 2ptm_A          170 VQHFNQVL  177 (198)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665433

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=97.56  E-value=4e-05  Score=70.04  Aligned_cols=72  Identities=25%  Similarity=0.346  Sum_probs=59.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      |+++|+.++.+|+|++|.+++..++ ..+..+++|+.||+.+++.+.++.              .++.+ .+++.++.++
T Consensus        57 i~~~g~~~~~~y~i~~G~v~~~~~g-~~~~~~~~G~~fGe~~~l~~~~~~--------------~~~~a-~~~~~v~~i~  120 (139)
T 3ocp_A           57 IIKEGDVGSLVYVMEDGKVEVTKEG-VKLCTMGPGKVFGELAILYNCTRT--------------ATVKT-LVNVKLWAID  120 (139)
T ss_dssp             EECTTSCCCEEEEEEECCEEEEETT-EEEEEECTTCEESCHHHHHCCCCS--------------SEEEE-SSCEEEEEEE
T ss_pred             EEeCCCcCCEEEEEEeCEEEEEECC-EEEEEeCCCCEeccHHHHCCCCcc--------------eEEEE-CcceEEEEEc
Confidence            7899999999999999999998766 567789999999999999988877              67777 5677777777


Q ss_pred             CCcccccc
Q psy11552        473 PNRFQQIT  480 (714)
Q Consensus       473 r~~f~~~t  480 (714)
                      +..+....
T Consensus       121 ~~~~~~l~  128 (139)
T 3ocp_A          121 RQCFQTIM  128 (139)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665433

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=97.55  E-value=4.1e-05  Score=75.56  Aligned_cols=73  Identities=15%  Similarity=0.243  Sum_probs=61.2

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCC--chhHHHHHHhhhheeeeeccccccCCceeee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNA--PSYQLHMYLEQMAVYFTTTAPDIKGPRRYKF  470 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~--p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~  470 (714)
                      |+++|+.++.+|+|.+|.+++..++ ..+..+++||.|||.+++...  |+.              +++.+ .+++.++.
T Consensus       109 I~~~G~~~~~ly~I~~G~v~v~~~~-~~~~~l~~G~~fGe~~~~~~~~~~~~--------------~~v~a-~~~~~l~~  172 (212)
T 3ukn_A          109 LIRQGDALQAIYFVCSGSMEVLKDN-TVLAILGKGDLIGSDSLTKEQVIKTN--------------ANVKA-LTYCDLQY  172 (212)
T ss_dssp             EECTTSBCCEEEEEEECCEEEESSS-CEEEEECTTCEEECSCCSSSSCCBBC--------------SEEEE-SSCEEEEE
T ss_pred             EEECCCcccEEEEEEecEEEEEECC-eEEEEecCCCCcCcHHhccCCCCCcc--------------eEEEE-cccEEEEE
Confidence            7899999999999999999999865 667789999999999999987  776              77777 67777788


Q ss_pred             ecCCccccccc
Q psy11552        471 RGPNRFQQITA  481 (714)
Q Consensus       471 l~r~~f~~~tp  481 (714)
                      ++++.|.....
T Consensus       173 i~~~~f~~ll~  183 (212)
T 3ukn_A          173 ISLKGLREVLR  183 (212)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EeHHHHHHHHH
Confidence            88877655443

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=97.53  E-value=4.7e-05  Score=74.59  Aligned_cols=72  Identities=22%  Similarity=0.373  Sum_probs=58.7

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      |+++|+.++.+|+|.+|.+++...+.. ...+++|+.||+.+|+...|+.              +++.+ .+++.++.++
T Consensus       106 I~~~g~~~~~ly~I~~G~v~v~~~~g~-~~~l~~G~~fGe~~~~~~~~~~--------------~~v~a-~~~~~l~~i~  169 (202)
T 3bpz_A          106 IIREGTIGKKMYFIQHGVVSVLTKGNK-EMKLSDGSYFGEICLLTRGRRT--------------ASVRA-DTYCRLYSLS  169 (202)
T ss_dssp             EECTTSBCCEEEEEEECEEEEECTTSC-CEEEETTCEECHHHHHHCSBCS--------------SEEEE-SSCEEEEEEE
T ss_pred             EEECCCcCCeEEEEeccEEEEEECCCe-EEEEcCCCEeccHHHhcCCCcc--------------cEEEE-eeEEEEEEEE
Confidence            788999999999999999999875433 3478999999999999998877              67777 5677778888


Q ss_pred             CCcccccc
Q psy11552        473 PNRFQQIT  480 (714)
Q Consensus       473 r~~f~~~t  480 (714)
                      ++.|....
T Consensus       170 ~~~f~~ll  177 (202)
T 3bpz_A          170 VDNFNEVL  177 (202)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87765433

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=97.53  E-value=0.00024  Score=70.47  Aligned_cols=142  Identities=22%  Similarity=0.314  Sum_probs=89.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+++|++++.+|+|.+|.+++....    ...+..+++|+.||+.+++.+.|+.              .++.+ .+++.+
T Consensus        40 i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~--------------~~~~A-~~~~~v  104 (227)
T 3d0s_A           40 VFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGELSIFDPGPRT--------------SSATT-ITEVRA  104 (227)
T ss_dssp             EECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCHHHHSCSCCS--------------SEEEE-SSCEEE
T ss_pred             EEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeHHHcCCCCce--------------eEEEE-cccEEE
Confidence            7899999999999999999998732    2346688999999999999988776              67777 567778


Q ss_pred             eeecCCccccccchhhhhh--------hhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh-------cC--ChH
Q psy11552        469 KFRGPNRFQQITANLDVFL--------RRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE-------YR--NIN  531 (714)
Q Consensus       469 ~~l~r~~f~~~tpnI~~~i--------~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~-------l~--Nf~  531 (714)
                      +.++++.+......-..+.        .+......++..  +...+..+|.  ...+..++...-.       +.  ==.
T Consensus       105 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~--l~~~~~~~Rl--~~~L~~l~~~~~~~~~~~~~i~~~~t~  180 (227)
T 3d0s_A          105 VSMDRDALRSWIADRPEISEQLLRVLARRLRRTNNNLAD--LIFTDVPGRV--AKQLLQLAQRFGTQEGGALRVTHDLTQ  180 (227)
T ss_dssp             EEEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH--HHHSCHHHHH--HHHHHHHHHHHEEEETTEEEEECCCCH
T ss_pred             EEEeHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHHH--HHHHHHHHHHhCCcCCCceEEcCCCCH
Confidence            8888888775443332222        222222222222  2234445553  3344455544321       11  013


Q ss_pred             HHHHHHHhcCchhhhchHHhhc
Q psy11552        532 ALFAVLMGLSNVAVSRLSLTWD  553 (714)
Q Consensus       532 s~~aI~~gL~~~~V~RLk~Tw~  553 (714)
                      .-.|=+.|++-..|+|.-+.|.
T Consensus       181 ~~lA~~lg~sr~tvsR~l~~l~  202 (227)
T 3d0s_A          181 EEIAQLVGASRETVNKALADFA  202 (227)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHH
Confidence            4556666777777777655544

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=97.49  E-value=6.6e-05  Score=68.38  Aligned_cols=73  Identities=18%  Similarity=0.346  Sum_probs=57.2

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----cee---eeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCC
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGC---VTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGP  465 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~---v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p  465 (714)
                      |+++|++++.+|+|.+|.+++....    ...   +..+++|+.||+.+++.+.|+.              .++.+ .++
T Consensus        40 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~fG~~~~~~~~~~~--------------~~~~a-~~~  104 (142)
T 3mdp_A           40 IFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIFGVSSLIKPYHYT--------------SSARA-TKP  104 (142)
T ss_dssp             EECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEECGGGSSTTCBCS--------------SEEEE-SSC
T ss_pred             EEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEechHHHcCCCCce--------------EEEEE-CCc
Confidence            7899999999999999999998632    233   6788999999999999887776              67777 566


Q ss_pred             ceeeeecCCcccccc
Q psy11552        466 RRYKFRGPNRFQQIT  480 (714)
Q Consensus       466 ~~~~~l~r~~f~~~t  480 (714)
                      +.++.++++.+....
T Consensus       105 ~~~~~i~~~~~~~l~  119 (142)
T 3mdp_A          105 VRVVDINGARLREMS  119 (142)
T ss_dssp             EEEEEEEHHHHHHHH
T ss_pred             EEEEEEeHHHHHHHH
Confidence            777778777665433

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=97.48  E-value=6.5e-05  Score=70.06  Aligned_cols=72  Identities=33%  Similarity=0.517  Sum_probs=59.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      |+++|+.++.+|+|++|.+++..++ ..+..+++|+.||+.+++.+.|+.              .++.+ .+++.++.++
T Consensus        72 i~~~G~~~~~~y~i~~G~v~~~~~~-~~~~~~~~G~~fGe~~~~~~~~~~--------------~~v~A-~~~~~~~~i~  135 (154)
T 3pna_A           72 VIQQGDEGDNFYVIDQGEMDVYVNN-EWATSVGEGGSFGELALIYGTPRA--------------ATVKA-KTNVKLWGID  135 (154)
T ss_dssp             EECTTSCCCEEEEEEESCEEEEETT-EEEEEECTTCEECCHHHHHCCCCS--------------SEEEE-SSCEEEEEEE
T ss_pred             EEeCCCCCCeEEEEEecEEEEEECC-EEEEEecCCCEeeehHhhcCCCcc--------------eEEEE-CcceEEEEEe
Confidence            7899999999999999999999855 567789999999999999988876              67777 5667777787


Q ss_pred             CCcccccc
Q psy11552        473 PNRFQQIT  480 (714)
Q Consensus       473 r~~f~~~t  480 (714)
                      +..|....
T Consensus       136 ~~~~~~ll  143 (154)
T 3pna_A          136 RDSYRRIL  143 (154)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            77665543

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=97.45  E-value=0.00025  Score=70.61  Aligned_cols=142  Identities=14%  Similarity=0.145  Sum_probs=87.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+++|++++.+|+|.+|.+++...   + ...+..+++|+.||+.+++.+.|+.              .++.+ .+++.+
T Consensus        44 i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~--------------~~~~A-~~~~~v  108 (232)
T 2gau_A           44 VFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCS--------------STAIA-VENSKV  108 (232)
T ss_dssp             EECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCCS--------------SEEEE-SSCEEE
T ss_pred             EEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhCCCCcc--------------eEEEE-ecceEE
Confidence            789999999999999999999863   2 3456788999999999999987776              67777 567777


Q ss_pred             eeecCCccccccchhhhhh--------hhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh------c--CChHH
Q psy11552        469 KFRGPNRFQQITANLDVFL--------RRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE------Y--RNINA  532 (714)
Q Consensus       469 ~~l~r~~f~~~tpnI~~~i--------~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~------l--~Nf~s  532 (714)
                      +.+++..+......-..+.        ++......++..  +...++.+|  +...++.++...-.      +  .==+.
T Consensus       109 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~--l~~~~~~~R--l~~~L~~l~~~~~~~~~~~~~~~~~t~~  184 (232)
T 2gau_A          109 LAIPVEAIEALLKGNTSFCRYFLKALAKELGYAERRTVT--LTQKHVRGR--LAETLLILKENFGFENDGATLSIYLSRE  184 (232)
T ss_dssp             EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH--HHHSCHHHH--HHHHHHHHHHHHCBCTTSSBBSCCCCHH
T ss_pred             EEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHH--HHHHHHHHHHHcCCCCCCcEEEcccCHH
Confidence            8888887765443222222        222222333222  223444444  33344466554321      1  11134


Q ss_pred             HHHHHHhcCchhhhchHHhhc
Q psy11552        533 LFAVLMGLSNVAVSRLSLTWD  553 (714)
Q Consensus       533 ~~aI~~gL~~~~V~RLk~Tw~  553 (714)
                      -.|=+.|++-..|.|.-+.|+
T Consensus       185 ~lA~~lg~sr~tvsR~l~~l~  205 (232)
T 2gau_A          185 ELATLSNMTVSNAIRTLSTFV  205 (232)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHH
Confidence            455566666667777544443

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=97.40  E-value=0.00012  Score=68.30  Aligned_cols=85  Identities=18%  Similarity=0.254  Sum_probs=63.9

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcC--CchhHHHHHHhhhheeeeeccccccCCceeee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNN--APSYQLHMYLEQMAVYFTTTAPDIKGPRRYKF  470 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~--~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~  470 (714)
                      |+++|++++.+|+|.+|.+++...+ ..+..+++|+.||+.+++..  .|+.              .++.+ .+++..+.
T Consensus        61 i~~~g~~~~~~y~i~~G~v~~~~~~-~~~~~~~~G~~fG~~~~~~~~~~~~~--------------~~~~a-~~~~~v~~  124 (160)
T 4f8a_A           61 IYHAGESVDSLCFVVSGSLEVIQDD-EVVAILGKGDVFGDVFWKEATLAQSC--------------ANVRA-LTYCDLHV  124 (160)
T ss_dssp             EECTTSBCCEEEEEEESEEEEEETT-EEEEEEETTCEEECCTTTCSSCCBCS--------------SEEEE-SSCEEEEE
T ss_pred             EEeCCCCccEEEEEEeeEEEEEECC-EEEEEecCCCEeCcHHHhcCcccceE--------------EEEEE-CCceEEEE
Confidence            7899999999999999999998754 56778999999999999988  4665              66777 56677777


Q ss_pred             ecCCccccccchhhhhhhhhhhHHHhHhhh
Q psy11552        471 RGPNRFQQITANLDVFLRRFNEIQYWVITE  500 (714)
Q Consensus       471 l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~  500 (714)
                      ++++.+..       +++.+..+..++...
T Consensus       125 i~~~~~~~-------l~~~~p~~~~~~~~~  147 (160)
T 4f8a_A          125 IKRDALQK-------VLEFYTAFSHSFSRN  147 (160)
T ss_dssp             EEHHHHHH-------HHHHCHHHHHHHHHH
T ss_pred             EcHHHHHH-------HHHHHHHHHHHHHHH
Confidence            77765544       344444444444443

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=97.40  E-value=0.00049  Score=67.50  Aligned_cols=73  Identities=22%  Similarity=0.364  Sum_probs=59.7

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      ++++|++++.+|+|.+|.+++...   + ...+..+++|+.||+.+++.+.|+.              .++.+ .+++.+
T Consensus        33 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~--------------~~~~a-~~~~~v   97 (216)
T 4ev0_A           33 IFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLLDEGERS--------------ASAVA-VEDTEL   97 (216)
T ss_dssp             EECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHHHCCBCS--------------SEEEE-SSSEEE
T ss_pred             EEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhcCCCCcc--------------eEEEE-cCCEEE
Confidence            789999999999999999999874   2 2356688999999999999988776              67777 566777


Q ss_pred             eeecCCcccccc
Q psy11552        469 KFRGPNRFQQIT  480 (714)
Q Consensus       469 ~~l~r~~f~~~t  480 (714)
                      +.++++.+....
T Consensus        98 ~~i~~~~~~~l~  109 (216)
T 4ev0_A           98 LALFREDYLALI  109 (216)
T ss_dssp             EEEEHHHHHHHH
T ss_pred             EEEcHHHHHHHH
Confidence            888888776544

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=97.39  E-value=0.00014  Score=66.64  Aligned_cols=72  Identities=24%  Similarity=0.413  Sum_probs=58.0

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+++|++.+.+|+|++|.+++...   + ...+..+++|+.||+.+++.+.|+.              .++.+ .+++.+
T Consensus        39 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~--------------~~~~a-~~~~~~  103 (149)
T 2pqq_A           39 LFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGELSLFDPGPRT--------------ATGTA-LTEVKL  103 (149)
T ss_dssp             EECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGGGGTSCEECS--------------SEEEE-SSCEEE
T ss_pred             EECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechHHhcCCCCcc--------------eEEEE-ccceEE
Confidence            789999999999999999999873   2 2346688999999999999987776              66776 566777


Q ss_pred             eeecCCccccc
Q psy11552        469 KFRGPNRFQQI  479 (714)
Q Consensus       469 ~~l~r~~f~~~  479 (714)
                      +.+++..+...
T Consensus       104 ~~i~~~~~~~l  114 (149)
T 2pqq_A          104 LALGHGDLQPW  114 (149)
T ss_dssp             EEEEGGGHHHH
T ss_pred             EEEeHHHHHHH
Confidence            77887766543

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=97.38  E-value=0.00025  Score=70.91  Aligned_cols=77  Identities=8%  Similarity=0.033  Sum_probs=61.1

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCc-hhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAP-SYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p-~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |+++|++++.+|+|.+|.+++...   + ...+..+++|+.||+.+++.+.+ +.              .++.+ .+++.
T Consensus        54 i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~fG~~~~~~~~~~~~--------------~~~~A-~~~~~  118 (232)
T 1zyb_A           54 IIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYA--------------SSYVA-HTEVH  118 (232)
T ss_dssp             EECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCS--------------SEEEE-SSCEE
T ss_pred             EECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCeeeehHHhCCCCCCc--------------eEEEE-ccceE
Confidence            789999999999999999999863   2 34566889999999999998877 55              67777 56777


Q ss_pred             eeeecCCccccccchhh
Q psy11552        468 YKFRGPNRFQQITANLD  484 (714)
Q Consensus       468 ~~~l~r~~f~~~tpnI~  484 (714)
                      ++.+++..+........
T Consensus       119 v~~i~~~~~~~l~~~~p  135 (232)
T 1zyb_A          119 TVCISKAFVLSDLFRYD  135 (232)
T ss_dssp             EEEEEHHHHHHTGGGSH
T ss_pred             EEEEEHHHHHHHhccCH
Confidence            78888888776554433

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=97.38  E-value=0.00011  Score=68.88  Aligned_cols=73  Identities=30%  Similarity=0.506  Sum_probs=58.7

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec---ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG---KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK  469 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~---~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~  469 (714)
                      |+++|+.++.+|+|++|.+++....   ...+..+++|+.||+.+++.+.|+.              .++.+ .+++.++
T Consensus        72 i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~~G~~fGe~~~~~~~~~~--------------~~v~A-~~~~~~~  136 (161)
T 3idb_B           72 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRA--------------ATITA-TSPGALW  136 (161)
T ss_dssp             EECTTSCCCEEEEEEESEEEEEEEETTEEEEEEEEESCCEECGGGGTCCCCCS--------------SEEEE-SSSEEEE
T ss_pred             EEeCCCCCcEEEEEEeCEEEEEEcCCCCeEEEEEcCCCCEechHHHHcCCCcc--------------cEEEE-CCCeEEE
Confidence            7899999999999999999998732   2456688999999999999988877              67777 5667777


Q ss_pred             eecCCcccccc
Q psy11552        470 FRGPNRFQQIT  480 (714)
Q Consensus       470 ~l~r~~f~~~t  480 (714)
                      .+++..+....
T Consensus       137 ~i~~~~~~~l~  147 (161)
T 3idb_B          137 GLDRVTFRRII  147 (161)
T ss_dssp             EEEHHHHHHHH
T ss_pred             EEeHHHHHHHH
Confidence            77777665433

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=97.37  E-value=0.00038  Score=69.18  Aligned_cols=141  Identities=17%  Similarity=0.136  Sum_probs=89.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+++|++++.+|+|.+|.+++....    ...+..+++|+.||+.+++.+.|+.              .++.+ .+++.+
T Consensus        40 i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~--------------~~~~a-~~~~~v  104 (231)
T 3e97_A           40 VVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGETAVLAHQERS--------------ASVRA-LTPVRT  104 (231)
T ss_dssp             CCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTTTTTCCCCCC--------------EEEEE-SSCEEE
T ss_pred             EEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeHHHhCCCCce--------------EEEEE-CCcEEE
Confidence            7899999999999999999998733    2346688999999999999988776              67777 567778


Q ss_pred             eeecCCccccccchhhhhh--------hhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh--------cCChHH
Q psy11552        469 KFRGPNRFQQITANLDVFL--------RRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE--------YRNINA  532 (714)
Q Consensus       469 ~~l~r~~f~~~tpnI~~~i--------~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~--------l~Nf~s  532 (714)
                      +.+++..+......-..+.        ++...+..++.    ...+.. ..++...+...+...-.        +.==..
T Consensus       105 ~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~----~~~~~~-~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~  179 (231)
T 3e97_A          105 LMLHREHFELILRRHPRVLWNLAEMLARRVTFLNDELI----AFGQNT-EAALTHVFANLYRQRLAAGVPQPEVLPLGTQ  179 (231)
T ss_dssp             EEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH----HHHHCH-HHHHHHHHHHHHHHHHHHTCSSTTEECCCHH
T ss_pred             EEEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH----HhccCh-HHHHHHHHHHHHHhcCCCCCCceEecCCCHH
Confidence            8888888876443222222        22223333332    111222 03445555555544321        111245


Q ss_pred             HHHHHHhcCchhhhchHHhhc
Q psy11552        533 LFAVLMGLSNVAVSRLSLTWD  553 (714)
Q Consensus       533 ~~aI~~gL~~~~V~RLk~Tw~  553 (714)
                      -.|=+.|++-..|+|.-+.|.
T Consensus       180 ~iA~~lg~sr~tvsR~l~~L~  200 (231)
T 3e97_A          180 DIMARTSSSRETVSRVLKRLE  200 (231)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHH
Confidence            566677777777777655544

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=97.31  E-value=0.00022  Score=69.48  Aligned_cols=73  Identities=22%  Similarity=0.345  Sum_probs=57.2

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC----chhHHHHHHhhhheeeeeccccccC
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA----PSYQLHMYLEQMAVYFTTTAPDIKG  464 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~----p~~~~~~~l~~~~ly~~itv~ei~~  464 (714)
                      ++++|++++.+|+|.+|.+++....    ...+..+++|+.||+.+++.+.    |+.              .++.+ .+
T Consensus        24 i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~--------------~~~~A-~~   88 (207)
T 2oz6_A           24 IIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERS--------------AWVRA-KV   88 (207)
T ss_dssp             EECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCC--------------SEEEE-SS
T ss_pred             EEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCcc--------------eEEEE-CC
Confidence            7899999999999999999998632    2356688999999999999887    665              66777 56


Q ss_pred             CceeeeecCCcccccc
Q psy11552        465 PRRYKFRGPNRFQQIT  480 (714)
Q Consensus       465 p~~~~~l~r~~f~~~t  480 (714)
                      ++.++.+++..+....
T Consensus        89 ~~~v~~i~~~~~~~l~  104 (207)
T 2oz6_A           89 ECEVAEISYAKFRELS  104 (207)
T ss_dssp             CEEEEEEEHHHHHHHH
T ss_pred             cEEEEEECHHHHHHHH
Confidence            7777888888776544

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=97.31  E-value=0.00012  Score=66.53  Aligned_cols=68  Identities=24%  Similarity=0.379  Sum_probs=55.9

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      |+++|++.+.+|+|.+|.+++....   ...+++|+.||+.+++.+.|+.              .++.+ .+++.++.++
T Consensus        45 i~~~g~~~~~~y~i~~G~v~~~~~~---~~~~~~G~~~G~~~~~~~~~~~--------------~~~~a-~~~~~~~~i~  106 (138)
T 1vp6_A           45 ICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEMALISGEPRS--------------ATVSA-ATTVSLLSLH  106 (138)
T ss_dssp             EECTTSCCCEEEEEEESCEEECSSS---CEEECTTCEECHHHHHHCCCCS--------------SCEEE-SSSEEEEEEE
T ss_pred             EEeCCCCcceEEEEEeeEEEEEeCC---cceECCCCEeeehHhccCCCce--------------eEEEE-CCCEEEEEEC
Confidence            7899999999999999999998755   3478999999999999988776              67777 5667777777


Q ss_pred             CCcccc
Q psy11552        473 PNRFQQ  478 (714)
Q Consensus       473 r~~f~~  478 (714)
                      +..+..
T Consensus       107 ~~~~~~  112 (138)
T 1vp6_A          107 SADFQM  112 (138)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766644

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=97.27  E-value=0.00021  Score=70.74  Aligned_cols=74  Identities=18%  Similarity=0.289  Sum_probs=59.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCc-hhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAP-SYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p-~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |+++|++++++|+|.+|.+++....    ...+..+++|+.||+.+++.+.| +.              .++.+ .+++.
T Consensus        43 i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~--------------~~~~a-~~~~~  107 (227)
T 3dkw_A           43 VFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYV--------------ATAQA-VVPSQ  107 (227)
T ss_dssp             EECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCTTTTTTCSBCS--------------SCEEE-SSCCE
T ss_pred             EEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHhcCCCCCCc--------------eEEEE-cCcEE
Confidence            7899999999999999999998632    23456888999999999998888 65              67777 56777


Q ss_pred             eeeecCCccccccc
Q psy11552        468 YKFRGPNRFQQITA  481 (714)
Q Consensus       468 ~~~l~r~~f~~~tp  481 (714)
                      ++.+++..|.....
T Consensus       108 v~~i~~~~~~~l~~  121 (227)
T 3dkw_A          108 LFRFSNKAYLRQLQ  121 (227)
T ss_dssp             EEEEESHHHHHHHS
T ss_pred             EEEEeHHHHHHHHH
Confidence            78888888875443

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=97.26  E-value=0.00019  Score=66.20  Aligned_cols=71  Identities=20%  Similarity=0.353  Sum_probs=56.0

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCc-hhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAP-SYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p-~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |+++|++++.+|+|.+|.+++...   + ...+..+++|+.||+.+++.+.+ +.              .++.+ .+++.
T Consensus        46 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~~--------------~~~~a-~~~~~  110 (154)
T 2z69_A           46 VFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEAMMFMDTPNYV--------------ATAQA-VVPSQ  110 (154)
T ss_dssp             EECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGGGGGSSCSBCS--------------SEEEE-SSSEE
T ss_pred             EecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccHhhccCCCCCc--------------eEEEE-ccceE
Confidence            789999999999999999999863   2 23466889999999999998877 65              66776 56677


Q ss_pred             eeeecCCcccc
Q psy11552        468 YKFRGPNRFQQ  478 (714)
Q Consensus       468 ~~~l~r~~f~~  478 (714)
                      ++.+++..+..
T Consensus       111 ~~~i~~~~~~~  121 (154)
T 2z69_A          111 LFRFSNKAYLR  121 (154)
T ss_dssp             EEEEEHHHHHH
T ss_pred             EEEECHHHHHH
Confidence            77777766654

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=97.26  E-value=0.00023  Score=75.22  Aligned_cols=73  Identities=23%  Similarity=0.375  Sum_probs=62.0

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec---ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG---KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK  469 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~---~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~  469 (714)
                      |+++|+.++.+|+|.+|.+++....   ...+..+++|+.||+.+++.+.|+.              .++.+ .+++.+.
T Consensus        47 i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~G~~fGe~~l~~~~~~~--------------~~v~A-~~~~~~~  111 (333)
T 4ava_A           47 LLRQGEPAVSFLLISSGSAEVSHVGDDGVAIIARALPGMIVGEIALLRDSPRS--------------ATVTT-IEPLTGW  111 (333)
T ss_dssp             EECTTSBCCCEEEEEECCEEEEEECTTCCEEEEEECTTCEESHHHHHHTCBCS--------------SEEEE-SSCEEEE
T ss_pred             EEeCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEecCCCEeeHHHhcCCCCce--------------EEEEE-ecCEEEE
Confidence            8899999999999999999998743   3367789999999999999998887              77877 6777888


Q ss_pred             eecCCcccccc
Q psy11552        470 FRGPNRFQQIT  480 (714)
Q Consensus       470 ~l~r~~f~~~t  480 (714)
                      .++++.|....
T Consensus       112 ~i~~~~~~~l~  122 (333)
T 4ava_A          112 TGGRGAFATMV  122 (333)
T ss_dssp             EECHHHHHHHH
T ss_pred             EEcHHHHHHHH
Confidence            88888776655

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=97.22  E-value=0.00063  Score=67.86  Aligned_cols=74  Identities=20%  Similarity=0.317  Sum_probs=59.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+++|++++.+|+|.+|.+++....    ...+..+++|+.||+.+++.+.|..              .++.+ .+++.+
T Consensus        45 i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~--------------~~~~a-~~~~~v  109 (237)
T 3fx3_A           45 LFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESFGEAVALRNTPYP--------------VSAEA-VTPCEV  109 (237)
T ss_dssp             EECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEECHHHHHHTCCCS--------------SEEEE-SSSEEE
T ss_pred             EEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEechHHHhcCCCCC--------------ceEEE-CCceEE
Confidence            7899999999999999999998732    2356688999999999999887776              66777 567777


Q ss_pred             eeecCCccccccc
Q psy11552        469 KFRGPNRFQQITA  481 (714)
Q Consensus       469 ~~l~r~~f~~~tp  481 (714)
                      ..+++..|.....
T Consensus       110 ~~i~~~~~~~l~~  122 (237)
T 3fx3_A          110 MHIPSPVFVSLMR  122 (237)
T ss_dssp             EEEEHHHHHHHHH
T ss_pred             EEEcHHHHHHHHH
Confidence            8888888765443

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=97.16  E-value=0.00016  Score=70.01  Aligned_cols=71  Identities=18%  Similarity=0.371  Sum_probs=57.0

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+++|++++.+|+|.+|.+++....    ...+..+++|+.||+.+++.+.|+.              .++.+ .+++.+
T Consensus        73 i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~~G~~fGe~~~l~~~~~~--------------~~v~A-~~~~~v  137 (187)
T 3gyd_A           73 LLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRS--------------ASCVA-SLPTDF  137 (187)
T ss_dssp             EECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEETTCEESHHHHHHCCCCS--------------SEEEE-EEEEEE
T ss_pred             EEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEccCCCeeeeHHHhCCCCee--------------EEEEE-CCCeEE
Confidence            8899999999999999999998743    2456688999999999999888776              66666 455666


Q ss_pred             eeecCCcccc
Q psy11552        469 KFRGPNRFQQ  478 (714)
Q Consensus       469 ~~l~r~~f~~  478 (714)
                      +.+++..+..
T Consensus       138 ~~i~~~~~~~  147 (187)
T 3gyd_A          138 AVLSRDALYQ  147 (187)
T ss_dssp             EEEEHHHHHH
T ss_pred             EEEcHHHHHH
Confidence            7777766544

>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.16  E-value=0.00018  Score=63.35  Aligned_cols=20  Identities=30%  Similarity=0.283  Sum_probs=19.5

Q ss_pred             hhHHHHHHHHHhhccccccc
Q psy11552         96 RQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv  115 (714)
                      |++|+.+||.|||.|+|+||
T Consensus        66 R~eAv~lgq~Ll~~gvi~hV   85 (105)
T 2ysr_A           66 RQQTIQLLRKFLKNHVIEDI   85 (105)
T ss_dssp             HHHHHHHHHHHHHTTSSEES
T ss_pred             HHHHHHHHHHHHHCCCeEec
Confidence            78999999999999999999

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=97.15  E-value=0.00041  Score=68.33  Aligned_cols=73  Identities=11%  Similarity=0.048  Sum_probs=58.2

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCC-chhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNA-PSYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~-p~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |+++|++++.+|+|.+|.+++...   + ...+..+++|+.||+.+++.+. |..              .++.+ .+++.
T Consensus        33 i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~~~~~--------------~~~~A-~~~~~   97 (213)
T 1o5l_A           33 VKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFP--------------VNVVA-GENSK   97 (213)
T ss_dssp             EECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCS--------------SEEEE-SSSEE
T ss_pred             EEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCCCCce--------------EEEEE-ccceE
Confidence            789999999999999999999863   2 2346688999999999988776 665              66777 56677


Q ss_pred             eeeecCCcccccc
Q psy11552        468 YKFRGPNRFQQIT  480 (714)
Q Consensus       468 ~~~l~r~~f~~~t  480 (714)
                      ++.++++.+....
T Consensus        98 v~~i~~~~~~~l~  110 (213)
T 1o5l_A           98 ILSIPKEVFLDLL  110 (213)
T ss_dssp             EEEEEHHHHHHHH
T ss_pred             EEEEeHHHHHHHH
Confidence            7788888776544

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=97.14  E-value=0.00087  Score=65.33  Aligned_cols=73  Identities=25%  Similarity=0.388  Sum_probs=58.6

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC-chhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA-PSYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~-p~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |+++|++++++|+|.+|.+++....    ...+..+++|+.||+.+++... |+.              .++.+ .+++.
T Consensus        30 i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~--------------~~~~a-~~~~~   94 (210)
T 3ryp_A           30 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS--------------AWVRA-KTACE   94 (210)
T ss_dssp             EECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCS--------------SEEEE-SSCEE
T ss_pred             EECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCCCce--------------EEEEE-CCcEE
Confidence            7899999999999999999998742    2346688999999999999887 665              66776 56777


Q ss_pred             eeeecCCcccccc
Q psy11552        468 YKFRGPNRFQQIT  480 (714)
Q Consensus       468 ~~~l~r~~f~~~t  480 (714)
                      +..+++..+....
T Consensus        95 v~~i~~~~~~~l~  107 (210)
T 3ryp_A           95 VAEISYKKFRQLI  107 (210)
T ss_dssp             EEEEEHHHHHHHH
T ss_pred             EEEEcHHHHHHHH
Confidence            7788888776544

>1uhw_A Pleckstrin; three-helix bundle, beta-ARM, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31 PDB: 1w4m_A

Probab=97.13  E-value=0.0002  Score=63.12  Aligned_cols=31  Identities=23%  Similarity=0.222  Sum_probs=27.1

Q ss_pred             hhHHHHHHHHHhhccccccc--------------------ceeeEeecCCC
Q psy11552         96 RQITTGMWQALLEEGVIYHG--------------------KISCFFFSETE  126 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv--------------------~~~y~f~~~~~  126 (714)
                      |+||+.+||.||+.|+|+||                    .+||||..+..
T Consensus        56 R~EAv~lgq~Ll~~G~i~hV~d~~~~~~~~~~~~~F~D~~~~lYrF~~~~~  106 (109)
T 1uhw_A           56 RQEGLMISASLLSEGYLQPAGDLSKNAADGIAENPFLDSPDAFYYFPDSGP  106 (109)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSSSHHHHHHHSSSCCCCCCSSCCEECTTSSS
T ss_pred             HHHHHHHHHHHHHCCeEEeCccccccccccccccceecCCCcEEEEcCCCC
Confidence            78999999999999999999                    37888876653

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=97.12  E-value=0.00085  Score=68.38  Aligned_cols=73  Identities=25%  Similarity=0.388  Sum_probs=59.1

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC-chhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA-PSYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~-p~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |+++|++++.+|+|.+|.+++....    ...+..+++|+.||+.+++.+. |+.              .++.+ .+++.
T Consensus        80 i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~--------------~~~~A-~~~~~  144 (260)
T 3kcc_A           80 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS--------------AWVRA-KTACE  144 (260)
T ss_dssp             EECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC--------------SEEEE-SSCEE
T ss_pred             EECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc--------------eEEEE-CCCeE
Confidence            7899999999999999999998732    2346688999999999999887 665              67777 56777


Q ss_pred             eeeecCCcccccc
Q psy11552        468 YKFRGPNRFQQIT  480 (714)
Q Consensus       468 ~~~l~r~~f~~~t  480 (714)
                      ++.++++.|....
T Consensus       145 l~~i~~~~~~~l~  157 (260)
T 3kcc_A          145 VAEISYKKFRQLI  157 (260)
T ss_dssp             EEEEEHHHHHHHH
T ss_pred             EEEEcHHHHHHHH
Confidence            7888888776544

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=97.10  E-value=0.0014  Score=64.40  Aligned_cols=142  Identities=10%  Similarity=0.154  Sum_probs=86.7

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCc--cchhhhhcCCchhHHHHHHhhhheeeeeccccccCCc
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGED--FGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPR  466 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~--fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~  466 (714)
                      ++++|++++++|+|.+|.+++....    ...+..+++||.  ||+.+++...|..              .++.+ .+++
T Consensus        37 i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~~~~~~~~~~~--------------~~~~a-~~~~  101 (220)
T 3dv8_A           37 IHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSASCIMRSIQFE--------------VTIEA-EKDT  101 (220)
T ss_dssp             EEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGGGGGCTTCCCC--------------CEEEE-SSCE
T ss_pred             EECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhHHHHhCCCCCc--------------eEEEE-eeee
Confidence            7899999999999999999998732    234568889999  8999999988876              67777 5677


Q ss_pred             eeeeecCCccccccchhhhhhhh--------hhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHh--hcCChHHHHHH
Q psy11552        467 RYKFRGPNRFQQITANLDVFLRR--------FNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCK--EYRNINALFAV  536 (714)
Q Consensus       467 ~~~~l~r~~f~~~tpnI~~~i~~--------fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~--~l~Nf~s~~aI  536 (714)
                      ..+.+++..+.........+...        ......++.  .+...+..+|  +...+...+....  .+.==..-.|=
T Consensus       102 ~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~R--l~~~L~~~~~~~~~~~~~~t~~~lA~  177 (220)
T 3dv8_A          102 DLWIIPAEIYKGIMKDSAPVANYTNELMATRFSDVMWLIE--QIMWKSLDKR--VASFLLEETSIEGTNELKITHETIAN  177 (220)
T ss_dssp             EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHHHSCHHHH--HHHHHHHHHHHHTSSEECCCHHHHHH
T ss_pred             EEEEEEHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHH--HHHHHHHhhhhcCCceecCCHHHHHH
Confidence            77888888876544333222222        222222222  1223344444  3333444443321  01111345566


Q ss_pred             HHhcCchhhhchHHhhc
Q psy11552        537 LMGLSNVAVSRLSLTWD  553 (714)
Q Consensus       537 ~~gL~~~~V~RLk~Tw~  553 (714)
                      +.|++-..|+|.-+.|+
T Consensus       178 ~lg~sr~tvsR~l~~L~  194 (220)
T 3dv8_A          178 HLGSHREVITRMLRYFQ  194 (220)
T ss_dssp             HHTCCHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHH
Confidence            66777777777654443

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=97.09  E-value=0.00035  Score=67.46  Aligned_cols=73  Identities=8%  Similarity=0.088  Sum_probs=58.3

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---c-ceeeeeecCCCccchh-hhhcCCchhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKL-ALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~-~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      ++++|++++.+|+|.+|.+++...   + ...+..+++||.|||. +|+.+.|..              .++.+ .+++.
T Consensus        41 l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~~~~~~~~~~~--------------~~~~a-~~~~~  105 (194)
T 3dn7_A           41 LLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPAD--------------FYIQS-VENCE  105 (194)
T ss_dssp             EECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCHHHHHHTCBCS--------------SEEEE-SSCEE
T ss_pred             EECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeehHHHhcCCCCc--------------eEEEE-ECCEE
Confidence            789999999999999999999873   2 2345578899999987 788887776              67777 56777


Q ss_pred             eeeecCCcccccc
Q psy11552        468 YKFRGPNRFQQIT  480 (714)
Q Consensus       468 ~~~l~r~~f~~~t  480 (714)
                      +..+++..+....
T Consensus       106 v~~i~~~~~~~l~  118 (194)
T 3dn7_A          106 LLSITYTEQENLF  118 (194)
T ss_dssp             EEEEEHHHHHHHH
T ss_pred             EEEEeHHHHHHHH
Confidence            7788887776543

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=97.06  E-value=0.0017  Score=65.26  Aligned_cols=144  Identities=17%  Similarity=0.161  Sum_probs=87.5

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+.+|++++.+|+|.+|.+++....    ...+..+++|+.||+.+++...|..            ...++.+ .+++.+
T Consensus        54 i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~------------~~~~~~A-~~~~~v  120 (243)
T 3la7_A           54 IFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSD------------RFYHAVA-FTPVEL  120 (243)
T ss_dssp             EECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSB------------CCEEEEE-SSSEEE
T ss_pred             EEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCc------------ceEEEEE-ccceEE
Confidence            7899999999999999999998732    2346688999999999999887531            0045555 456677


Q ss_pred             eeecCCccccccchhhhhhhhh--------hhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh---------cCChH
Q psy11552        469 KFRGPNRFQQITANLDVFLRRF--------NEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE---------YRNIN  531 (714)
Q Consensus       469 ~~l~r~~f~~~tpnI~~~i~~f--------n~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~---------l~Nf~  531 (714)
                      ..+++..+......-..+...+        .....++.  .+...+..+|  +...++..+...-.         +.==.
T Consensus       121 ~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~--~l~~~~~~~R--la~~L~~l~~~~g~~~~~~~~i~~~lt~  196 (243)
T 3la7_A          121 LSAPIEQVEQALKENPELSMLMLRGLSSRILQTEMMIE--TLAHRDMGSR--LVSFLLILCRDFGVPCADGITIDLKLSH  196 (243)
T ss_dssp             EEEEHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH--HHHCSSHHHH--HHHHHHHHHHHHEEECSSSEEECSCCCH
T ss_pred             EEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCHHHH--HHHHHHHHHHHhCCCCCCCeEEeccCCH
Confidence            7888887765443332222221        11111211  2223444444  44455555554321         11114


Q ss_pred             HHHHHHHhcCchhhhchHHhhc
Q psy11552        532 ALFAVLMGLSNVAVSRLSLTWD  553 (714)
Q Consensus       532 s~~aI~~gL~~~~V~RLk~Tw~  553 (714)
                      .-.|=+.|++-..|.|.-+.|.
T Consensus       197 ~~lA~~lG~sr~tvsR~l~~L~  218 (243)
T 3la7_A          197 QAIAEAIGSTRVTVTRLLGDLR  218 (243)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcHHHHHHHHHHHH
Confidence            5666677777778887655544

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=97.05  E-value=0.00013  Score=66.23  Aligned_cols=72  Identities=18%  Similarity=0.395  Sum_probs=56.3

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeecc-ccccCCceeeee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTA-PDIKGPRRYKFR  471 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv-~ei~~p~~~~~l  471 (714)
                      |+++|+.++.+|+|++|.+++....... ..+++|+.||+.+++.+.++.              .++ .+ .+++.++.+
T Consensus        51 i~~~g~~~~~~y~i~~G~v~~~~~~g~~-~~l~~G~~fG~~~~~~~~~~~--------------~~~~~a-~~~~~~~~i  114 (134)
T 2d93_A           51 ILEDGQELDSWYVILNGTVEISHPDGKV-ENLFMGNSFGITPTLDKQYMH--------------GIVRTK-VDDCQFVCI  114 (134)
T ss_dssp             EECTTCEECEEEECCBSCEEEECSSSCE-EEECTTCEESCCSSSCCEECC--------------SEEEES-SSSEEEEEE
T ss_pred             EEeCCCCCCeEEEEEeCEEEEEcCCCcE-EEecCCCccChhHhcCCCcce--------------eEEEEE-ecceEEEEE
Confidence            7899999999999999999998743333 678999999999999987775              455 55 556677777


Q ss_pred             cCCcccccc
Q psy11552        472 GPNRFQQIT  480 (714)
Q Consensus       472 ~r~~f~~~t  480 (714)
                      ++..+....
T Consensus       115 ~~~~~~~l~  123 (134)
T 2d93_A          115 AQQDYWRIL  123 (134)
T ss_dssp             EHHHHHHHS
T ss_pred             eHHHHHHHH
Confidence            776665433

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=97.05  E-value=0.0011  Score=64.51  Aligned_cols=137  Identities=15%  Similarity=0.147  Sum_probs=83.6

Q ss_pred             ccccCCCC--ceEEEEEeCeEEEEee---c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCc
Q psy11552        393 VFHQGDEG--KSWYIIIQGSVDVVIY---G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPR  466 (714)
Q Consensus       393 i~~~g~~~--~~~YiI~~G~~~~~~~---~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~  466 (714)
                      |+++|+++  +.+|+|.+|.+.+...   + ...+..+++|+.||+ +++...|..              .++.+ .+++
T Consensus        16 i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~--------------~~~~A-~~~~   79 (202)
T 2zcw_A           16 ILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERI--------------YFAEA-ATDV   79 (202)
T ss_dssp             EECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBC--------------SEEEE-SSCE
T ss_pred             EECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcc--------------eEEEE-cccE
Confidence            78899999  9999999999999863   2 234568899999999 888877766              56666 4566


Q ss_pred             eeeeecCCccccccchhhh-----hhhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh--------cCChHHH
Q psy11552        467 RYKFRGPNRFQQITANLDV-----FLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE--------YRNINAL  533 (714)
Q Consensus       467 ~~~~l~r~~f~~~tpnI~~-----~i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~--------l~Nf~s~  533 (714)
                      .+..+ +..|.   |.+..     +..+......|+...  ...+..+|.  ...++..+...-.        +.==..-
T Consensus        80 ~v~~i-~~~~~---p~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~Rl--~~~L~~l~~~~~~~~~~~~~~~~~t~~~  151 (202)
T 2zcw_A           80 RLEPL-PENPD---PELLKDLAQHLSQGLAEAYRRIERL--ATQRLKNRM--AAALLELSETPLAHEEEGKVVLKATHDE  151 (202)
T ss_dssp             EEEEC-CSSCC---HHHHHHHHHHHHHHHHHHHHHHHHH--HHCCHHHHH--HHHHHHHTTSTTEEEETTEEEEECCHHH
T ss_pred             EEEEE-hHhcC---HHHHHHHHHHHHHHHHHHHHHHHHH--hcCCHHHHH--HHHHHHHHHhcCCCCCCcEEccCCCHHH
Confidence            67777 77776   43321     123333334443332  234444443  3334444332110        1111345


Q ss_pred             HHHHHhcCchhhhchHHhhc
Q psy11552        534 FAVLMGLSNVAVSRLSLTWD  553 (714)
Q Consensus       534 ~aI~~gL~~~~V~RLk~Tw~  553 (714)
                      .|=+.|++-..|.|.-+.|.
T Consensus       152 lA~~lg~sr~tvsR~l~~L~  171 (202)
T 2zcw_A          152 LAAAVGSVRETVTKVIGELA  171 (202)
T ss_dssp             HHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHH
Confidence            66667777777777655444

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=97.04  E-value=0.0013  Score=65.06  Aligned_cols=73  Identities=22%  Similarity=0.294  Sum_probs=57.6

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC-chhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA-PSYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~-p~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |+++|++++.+|+|.+|.+++....    ...+..+++|+.||+.+++.+. |..              .++.+ .+++.
T Consensus        45 i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~--------------~~~~a-~~~~~  109 (230)
T 3iwz_A           45 VFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEMGLFIESDTRE--------------VILRT-RTQCE  109 (230)
T ss_dssp             EECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCGGGTSCCSBCC--------------SEEEE-SSCEE
T ss_pred             EECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEehhhhcCCCCce--------------eEEEE-cCcEE
Confidence            8899999999999999999998732    2356688999999999998875 554              56666 56667


Q ss_pred             eeeecCCcccccc
Q psy11552        468 YKFRGPNRFQQIT  480 (714)
Q Consensus       468 ~~~l~r~~f~~~t  480 (714)
                      ...+++..+....
T Consensus       110 v~~i~~~~~~~l~  122 (230)
T 3iwz_A          110 LAEISYERLQQLF  122 (230)
T ss_dssp             EEEEEHHHHHHHH
T ss_pred             EEEEeHHHHHHHH
Confidence            7778887776544

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=96.93  E-value=0.0021  Score=64.35  Aligned_cols=73  Identities=14%  Similarity=0.134  Sum_probs=52.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee---cce-eeeeecCCCccchhhhhcCCch--hHHHHHHhhhheeeeeccccccCCc
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY---GKG-CVTSLYAGEDFGKLALVNNAPS--YQLHMYLEQMAVYFTTTAPDIKGPR  466 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~---~~~-~v~~l~~gd~fge~~~L~~~p~--~~~~~~l~~~~ly~~itv~ei~~p~  466 (714)
                      |+++|++++.+|+|.+|.+++...   +.. .+..+ +|+.||+.+++...++  .              .++.++.+++
T Consensus        29 i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~~~~--------------~~~~a~~~~~   93 (238)
T 2bgc_A           29 IFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETSVGY--------------YNLEVISEQA   93 (238)
T ss_dssp             EECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCBSCC--------------CEEEECSSEE
T ss_pred             EEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCcCcc--------------eeEEEEEcce
Confidence            789999999999999999999873   233 34455 9999999999988753  2              2333321245


Q ss_pred             eeeeecCCcccccc
Q psy11552        467 RYKFRGPNRFQQIT  480 (714)
Q Consensus       467 ~~~~l~r~~f~~~t  480 (714)
                      .+..+++..|....
T Consensus        94 ~v~~i~~~~~~~l~  107 (238)
T 2bgc_A           94 TAYVIKINELKELL  107 (238)
T ss_dssp             EEEEEEHHHHHHHH
T ss_pred             EEEEEeHHHHHHHH
Confidence            67778887776544

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=96.91  E-value=0.0036  Score=63.02  Aligned_cols=139  Identities=17%  Similarity=0.168  Sum_probs=86.3

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+++|++++.+|+|.+|.+++....    ...+..+++|+.||+  ++... ..              .++.+ .+++.+
T Consensus        43 i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--~l~~~-~~--------------~~~~A-~~~~~v  104 (250)
T 3e6c_C           43 VIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--LYPTG-NN--------------IYATA-MEPTRT  104 (250)
T ss_dssp             EECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--CSCCS-CC--------------EEEEE-SSSEEE
T ss_pred             EECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--ecCCC-Cc--------------eEEEE-cccEEE
Confidence            8899999999999999999998732    234668899999999  56555 54              66777 567777


Q ss_pred             eeecCCccccccchhhhh--------hhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh---------cCChH
Q psy11552        469 KFRGPNRFQQITANLDVF--------LRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE---------YRNIN  531 (714)
Q Consensus       469 ~~l~r~~f~~~tpnI~~~--------i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~---------l~Nf~  531 (714)
                      ..+++..+......-..+        ..+......++..  +...+..+|  +...+..++...-.         +.==.
T Consensus       105 ~~i~~~~~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~--~~~~~~~~R--l~~~L~~l~~~~~~~~~~~~~i~~~~t~  180 (250)
T 3e6c_C          105 CWFSEKSLRTVFRTDEDMIFEIFKNYLTKVAYYARQVAE--MNTYNPTIR--ILRLFYELCSSQGKRVGDTYEITMPLSQ  180 (250)
T ss_dssp             EEECHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHH--HTTSCHHHH--HHHHHHHHHHHHCEEETTEEEEECCCCH
T ss_pred             EEEcHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCHHHH--HHHHHHHHHHHhCCCCCCCcEecCCCCH
Confidence            888888876544322222        2223333333322  223444444  44555555554321         11123


Q ss_pred             HHHHHHHhcCchhhhchHHhhc
Q psy11552        532 ALFAVLMGLSNVAVSRLSLTWD  553 (714)
Q Consensus       532 s~~aI~~gL~~~~V~RLk~Tw~  553 (714)
                      .-.|=+.|++-..|.|.-+.|.
T Consensus       181 ~~iA~~lG~sr~tvsR~l~~L~  202 (250)
T 3e6c_C          181 KSIGEITGVHHVTVSRVLASLK  202 (250)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHH
Confidence            4466667777778888655554

>1v3f_A Pleckstrin 2; three-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: a.4.5.31

Probab=96.81  E-value=0.00059  Score=61.46  Aligned_cols=21  Identities=19%  Similarity=0.139  Sum_probs=19.8

Q ss_pred             hhHHHHHHHHHhhcccccccc
Q psy11552         96 RQITTGMWQALLEEGVIYHGK  116 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv~  116 (714)
                      |++|+.+||.||+.|+|+||.
T Consensus        56 R~eAv~lgq~Ll~~G~i~hV~   76 (120)
T 1v3f_A           56 RLEAVTLASMLMEENFLRPVG   76 (120)
T ss_dssp             HHHHHHHHHHHHHHTSEEECS
T ss_pred             HHHHHHHHHHHHHCCCeEEcc
Confidence            679999999999999999995

>2cso_A Pleckstrin; DEP domain, platelet P47 protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.31

Probab=96.79  E-value=0.00063  Score=61.58  Aligned_cols=29  Identities=24%  Similarity=0.265  Sum_probs=26.1

Q ss_pred             hhHHHHHHHHHhhccccccc--------------------ceeeEeecC
Q psy11552         96 RQITTGMWQALLEEGVIYHG--------------------KISCFFFSE  124 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv--------------------~~~y~f~~~  124 (714)
                      |+||+.+||.||+.|+|+||                    ..||||..+
T Consensus        66 R~EAv~lg~~Ll~~G~i~hV~d~s~~~~~~~~~~~f~dd~~~lYrF~~~  114 (127)
T 2cso_A           66 RQEGLMIASSLLNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYFPDS  114 (127)
T ss_dssp             HHHHHHHHHHHHHHTSSEEESHHHHHHHHSSCSCCCCCCTTCEEECSSS
T ss_pred             HHHHHHHHHHHHHCCeEEeCccccccccccccccceecCCCcEEEecCC
Confidence            68999999999999999999                    478999754

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=96.77  E-value=0.00046  Score=62.47  Aligned_cols=77  Identities=17%  Similarity=0.169  Sum_probs=52.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec--c-eeee--eecCCCccchhhh---hcCCchhHHHHHHhhhheeeeeccccccC
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG--K-GCVT--SLYAGEDFGKLAL---VNNAPSYQLHMYLEQMAVYFTTTAPDIKG  464 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~--~-~~v~--~l~~gd~fge~~~---L~~~p~~~~~~~l~~~~ly~~itv~ei~~  464 (714)
                      |+++|+.++.+|+|++|.+++....  . ..+.  .+++|+.||+.++   +...|+..       + --...++.+ .+
T Consensus        40 i~~~G~~~~~~y~i~~G~v~~~~~~~g~~~~~~~~~l~~G~~fGe~~l~~~~~~~~~~~-------~-~~~~~~~~A-~~  110 (137)
T 1wgp_A           40 LVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKSGSN-------L-PSSTRTVKA-LT  110 (137)
T ss_dssp             EECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSCCSS-------S-CBCSSEEEE-SS
T ss_pred             EEeCCCCCCeEEEEEeeEEEEEEcCCCcceeeeeeeecCCCEecHHHHHHHhccccccc-------c-ccceeEEEE-eE
Confidence            7899999999999999999965322  1 2233  8899999999996   77765210       0 000156666 55


Q ss_pred             CceeeeecCCcccc
Q psy11552        465 PRRYKFRGPNRFQQ  478 (714)
Q Consensus       465 p~~~~~l~r~~f~~  478 (714)
                      ++.++.++++.+..
T Consensus       111 ~~~~~~i~~~~~~~  124 (137)
T 1wgp_A          111 EVEAFALIADELKF  124 (137)
T ss_dssp             CBEEEEEEHHHHHH
T ss_pred             EEEEEEECHHHHHH
Confidence            66777777766654

>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31

Probab=96.64  E-value=0.00077  Score=59.22  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=23.9

Q ss_pred             hhHHHHHHHHHhhccccccc--------ceeeEee
Q psy11552         96 RQITTGMWQALLEEGVIYHG--------KISCFFF  122 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv--------~~~y~f~  122 (714)
                      |++|+.+||.|++.|+|+||        ..||+|.
T Consensus        70 r~eAv~lg~~Ll~~G~I~hv~~~~~F~D~~~y~f~  104 (105)
T 1fsh_A           70 RREARKYASSMLKHGFLRHTVNKITFSEQCYYVFG  104 (105)
T ss_dssp             HHHHHHHHHHHHHTTTEECSSSSCCCCSSSCCEEC
T ss_pred             HHHHHHHHHHHHHCCcEEEcCCCCcccCCCeeecC
Confidence            68999999999999999999        5667774

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=96.54  E-value=0.0072  Score=59.35  Aligned_cols=135  Identities=14%  Similarity=0.145  Sum_probs=78.9

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee--c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY--G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK  469 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~--~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~  469 (714)
                      |+++|++++.+|+|.+|.+++...  + ...+..+++|+.||+       |+.              .++.+ .+++.++
T Consensus        38 i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~~G~-------~~~--------------~~~~A-~~~~~v~   95 (220)
T 2fmy_A           38 LYTPNTERNLVFLVKSGRVRVYLAYEDKEFTLAILEAGDIFCT-------HTR--------------AFIQA-MEDTTIL   95 (220)
T ss_dssp             EECTTCSSCEEEEEEESEEEEEEECSSCEEEEEEEETTCEEES-------CSS--------------SEEEE-SSSEEEE
T ss_pred             EECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEeCC-------ccc--------------eEEEE-cCcEEEE
Confidence            789999999999999999999532  2 234568889999999       444              56666 5667777


Q ss_pred             eecCCccccccchhhhh--------hhhhhhHHHhHhhhhccccChhhHHHHHHHHHHHHHHHhh---------cCChHH
Q psy11552        470 FRGPNRFQQITANLDVF--------LRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKE---------YRNINA  532 (714)
Q Consensus       470 ~l~r~~f~~~tpnI~~~--------i~~fn~ls~wV~~~Il~~~~~~~R~~~i~~fI~iA~~~~~---------l~Nf~s  532 (714)
                      .+++..+......-..+        ..+......++...  ...+..+|  +...+...+...-.         +.==..
T Consensus        96 ~i~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~R--l~~~L~~l~~~~g~~~~~~~~~~~~~t~~  171 (220)
T 2fmy_A           96 YTDIRNFQNIVVEFPAFSLNMVKVLGDLLKNSLTIINGL--VFKDARLR--LAEFLVQAAMDTGLKVPQGIKLELGLNTE  171 (220)
T ss_dssp             EEEHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHH--HTHHHHHH--HHHHHHHHHHHHCEEETTEEEEECSSCHH
T ss_pred             EEeHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCHHHH--HHHHHHHHHHHhCCCCCCcEEEeccCCHH
Confidence            88887776543222221        12222222222221  12233333  34445555544321         111245


Q ss_pred             HHHHHHhcCchhhhchHHhhc
Q psy11552        533 LFAVLMGLSNVAVSRLSLTWD  553 (714)
Q Consensus       533 ~~aI~~gL~~~~V~RLk~Tw~  553 (714)
                      -.|=+.|++-..|+|.-+.|.
T Consensus       172 ~lA~~lg~sr~tvsR~l~~l~  192 (220)
T 2fmy_A          172 EIALMLGTTRQTVSVLLNDFK  192 (220)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHH
Confidence            566667777777777655543

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=96.23  E-value=0.0017  Score=75.87  Aligned_cols=120  Identities=53%  Similarity=0.904  Sum_probs=97.0

Q ss_pred             CCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEe
Q psy11552        290 PLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSL  369 (714)
Q Consensus       290 ~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l  369 (714)
                      +..++.++++.+.+.|.++++|++|+++++..|+......+++++|++                                
T Consensus        19 p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~--------------------------------   66 (694)
T 3cf6_E           19 PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTV--------------------------------   66 (694)
T ss_dssp             GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCE--------------------------------
T ss_pred             hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCE--------------------------------
Confidence            788999999999999999999999999999999994322567877763                                


Q ss_pred             cCCCccchhhhccCCCcceeeecccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHh
Q psy11552        370 YAGEDFGKLALVNNAPRLIITSMVFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLE  449 (714)
Q Consensus       370 ~~Gd~FGElaLl~~~pr~atv~Ai~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~  449 (714)
                                             |+++|+.++.+|+|++|.+++...+...+..+++||.||+.+++.+.|+.       
T Consensus        67 -----------------------I~~eGd~~~~lyiIlsG~V~v~~~g~~il~~l~~Gd~fGe~al~~~~~~~-------  116 (694)
T 3cf6_E           67 -----------------------LFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRA-------  116 (694)
T ss_dssp             -----------------------EECTTSBCCEEEEEEESEEEEEETTTEEEEEEETTCEECHHHHHHTCBCS-------
T ss_pred             -----------------------EECCCCcCCeEEEEEEEEEEEEEeCCEEEEEeCCCCEeehHHHhCCCCce-------
Confidence                                   67889999999999999999998765677789999999999999887776       


Q ss_pred             hhheeeeeccccccCCceeeeecCCcccc
Q psy11552        450 QMAVYFTTTAPDIKGPRRYKFRGPNRFQQ  478 (714)
Q Consensus       450 ~~~ly~~itv~ei~~p~~~~~l~r~~f~~  478 (714)
                             +++.++..++.++.+++..|..
T Consensus       117 -------~tv~A~edd~~ll~I~~~~f~~  138 (694)
T 3cf6_E          117 -------ASIVLREDNCHFLRVDKEDFNR  138 (694)
T ss_dssp             -------SEEEECSSSEEEEEEEHHHHHH
T ss_pred             -------EEEEEeeCceEEEEEeHHHHHH
Confidence                   5666632135555666655543

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=95.92  E-value=0.0013  Score=70.47  Aligned_cols=72  Identities=22%  Similarity=0.378  Sum_probs=0.0

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      ++++|++++.+|+|.+|.+++....   ...+++||.|||.+++.+.|+.              .++.+ .+++....++
T Consensus       262 I~~~G~~~~~ly~I~~G~v~v~~~~---~~~l~~G~~fGe~~~l~~~~~~--------------~~~~A-~~~~~l~~i~  323 (355)
T 3beh_A          262 ICRIGEPGDRMFFVVEGSVSVATPN---PVELGPGAFFGEMALISGEPRS--------------ATVSA-ATTVSLLSLH  323 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeCCCcCceEEEEEeeEEEEEECC---eeEECCCCEEeehHHhCCCCcc--------------eEEEE-CccEEEEEEe
Confidence            7889999999999999999998765   3478999999999999998876              56666 5566667777


Q ss_pred             CCccccccch
Q psy11552        473 PNRFQQITAN  482 (714)
Q Consensus       473 r~~f~~~tpn  482 (714)
                      ++++.+....
T Consensus       324 ~~~f~~ll~~  333 (355)
T 3beh_A          324 SADFQMLCSS  333 (355)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            7777654433

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=95.54  E-value=0.027  Score=55.32  Aligned_cols=66  Identities=15%  Similarity=0.217  Sum_probs=50.1

Q ss_pred             ccccCCCCceEEEEEeCeEEEEee--c-ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIY--G-KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK  469 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~--~-~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~  469 (714)
                      |+++|++++.+|+|.+|.+++...  + ...+..+++|+.||       .|+.              .++.+ .+++.++
T Consensus        34 i~~~g~~~~~~y~i~~G~v~~~~~~~G~~~~~~~~~~G~~fG-------~~~~--------------~~~~A-~~~~~v~   91 (222)
T 1ft9_A           34 VCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFC-------MHSG--------------CLVEA-TERTEVR   91 (222)
T ss_dssp             EECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEE-------SCSS--------------CEEEE-SSCEEEE
T ss_pred             EECCCCCCCeEEEEEecEEEEEECCCCCEEEEEEcCCCCEec-------CCCC--------------EEEEE-ccceEEE
Confidence            789999999999999999999532  2 23456888999999       3444              56666 5667778


Q ss_pred             eecCCcccccc
Q psy11552        470 FRGPNRFQQIT  480 (714)
Q Consensus       470 ~l~r~~f~~~t  480 (714)
                      .+++..|....
T Consensus        92 ~i~~~~~~~l~  102 (222)
T 1ft9_A           92 FADIRTFEQKL  102 (222)
T ss_dssp             EECHHHHHHHH
T ss_pred             EEeHHHHHHHH
Confidence            88888776543

>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}

Probab=94.91  E-value=0.012  Score=63.60  Aligned_cols=35  Identities=20%  Similarity=0.151  Sum_probs=27.7

Q ss_pred             hhHHHHHHHHHhhccccccc--------ceeeEeecCCCCchh
Q psy11552         96 RQITTGMWQALLEEGVIYHG--------KISCFFFSETETIPM  130 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv--------~~~y~f~~~~~~~~~  130 (714)
                      |++|+.+||.|++.|+|+||        ..||+|.+..++--+
T Consensus        58 R~eA~~~g~~Ll~~G~i~hv~~~~~F~d~~~y~f~~~~~~~~~  100 (385)
T 3ml6_A           58 RREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLSGGPRP  100 (385)
T ss_dssp             HHHHHHHHHHHHHHSSEEESSSCSSCCSSSEEEECCCCC----
T ss_pred             HHHHHHHHHHHHhCCcEEEcCCcceecCcceEEeeccccccCc
Confidence            78999999999999999999        678999776655433

>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=85.56  E-value=0.38  Score=52.45  Aligned_cols=27  Identities=15%  Similarity=0.091  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHhhccccccc-----------ceeeEeec
Q psy11552         97 QITTGMWQALLEEGVIYHG-----------KISCFFFS  123 (714)
Q Consensus        97 ~~a~~~~~~l~~~g~~~hv-----------~~~y~f~~  123 (714)
                      +||+.+|+.|++.|+|+||           ..||||..
T Consensus        70 ~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~  107 (424)
T 2pbi_A           70 LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQT  107 (424)
T ss_dssp             HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECC
T ss_pred             HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCC
Confidence            3899999999999999999           67888853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	714
d1nvus_	481	a.117.1.1 (S:) Son of sevenless protein homolog 1	2e-40
d1o7fa1	142	a.4.5.31 (A:180-321) Regulatory domain of epac2, d	7e-26
d1o7fa1	142	a.4.5.31 (A:180-321) Regulatory domain of epac2, d	4e-14
d1o7fa3	124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	1e-18
d1fsha_	94	a.4.5.31 (A:) Segment polarity protein Dishevelled	3e-11
d1fsha_	94	a.4.5.31 (A:) Segment polarity protein Dishevelled	2e-08
d1o7fa2	155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	6e-11
d2csoa1	115	a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens	2e-09
d2csoa1	115	a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens	1e-07
d1v3fa_	120	a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [	7e-09
d1v3fa_	120	a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [	1e-07
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	3e-08
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	3e-06
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	2e-04
d1vp6a_	133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	0.002
d1zyba2	147	b.82.3.2 (A:1-147) Probable transcription regulato	0.002

>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 481

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 2e-40
 Identities = 49/241 (20%), Positives = 95/241 (39%), Gaps = 43/241 (17%)

Query: 480 TANLDVFLRRFNEIQYWVITEILLVTSLNKRVQILRKMIKLAAYCKEYRNINALFAVLMG 539
           + NL   +R    +  W    I+   +L +RV ++ ++I++    +E  N N +  V+  
Sbjct: 253 SPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNNFNGVLEVVSA 312

Query: 540 LSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVIPFMPLLLK 599
           +++  V RL  T++++PS+ KK   E   L     +++ Y   +  +  P +PF  + L 
Sbjct: 313 MNSSPVYRLDHTFEQIPSRQKKILEEAHEL--SEDHYKKYLAKLRSINPPCVPFFGIYLT 370

Query: 600 DLAFTHDGNKTVVDGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFA 659
           ++  T +GN  V+                                    L+NF K    A
Sbjct: 371 NILKTEEGNPEVLKRHGK------------------------------ELINFSKRRKVA 400

Query: 660 QTLRTLRYCRTRHLVLDPPTPKCESEVKSYVSCLRAMDNQRI------LTSMSQKLEPRR 713
           +    ++  + +   L       ES++K +   L  M N         L + S ++EPR 
Sbjct: 401 EITGEIQQYQNQPYCLRV-----ESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRN 455

Query: 714 S 714
            
Sbjct: 456 P 456

>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Regulatory domain of epac2, domain 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (253), Expect = 7e-26
 Identities = 43/104 (41%), Positives = 64/104 (61%), Gaps = 1/104 (0%)

Query: 146 RRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ 205
           R+C  G+ELVDW++    S   SR    GMWQ LLE+GV+ HV+ E+ F+DK + Y F  
Sbjct: 36  RQCCVGTELVDWMIQQT-SCVHSRTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLD 94

Query: 206 DKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQ 249
           D+   +   T ++  E +E L++ +L L++  PDA +R ILRK 
Sbjct: 95  DEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKP 138

>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 142

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Regulatory domain of epac2, domain 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.0 bits (166), Expect = 4e-14
 Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 37  PSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSR 96
           PS  + RAG +LR  +L+     +RDRK    +T  R+C  G+ELVDW++    S   SR
Sbjct: 2   PSEKILRAGKILRIAILSRAPHMIRDRK-YHLKTY-RQCCVGTELVDWMIQQT-SCVHSR 58

Query: 97  QITTGMWQALLEEGVIYHG 115
               GMWQ LLE+GV+ H 
Sbjct: 59  TQAVGMWQVLLEDGVLNHV 77

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.6 bits (198), Expect = 1e-18
 Identities = 62/93 (66%), Positives = 81/93 (87%)

Query: 294 TSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQ 353
           T +DLE IY+ELLH+K L HLS +V+RELAGV++FE+H + G +LF+QG+EG SWYII++
Sbjct: 1   TVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILK 60

Query: 354 GSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           GSV+VVIYGKG V +L+ G+DFGKLALVN+APR
Sbjct: 61  GSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPR 93

>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Segment polarity protein Dishevelled-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (141), Expect = 3e-11
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 13/90 (14%)

Query: 125 TETIPMERIYYSLYSGG-----------RTIARRCASGSELVDWLMSLAPSLAVSRQITT 173
           T    M  I   +               +        G+++VDWL +        R+   
Sbjct: 5   TVKSDMSAIVRVMQLPDSGLEIRDRMWLKITIANAVIGADVVDWLYT-HVEGFKERREAR 63

Query: 174 GMWQALLEEGVIYHVNGEQAFRDKCILYNF 203
               ++L+ G + H   +  F ++C  Y F
Sbjct: 64  KYASSMLKHGFLRHTVNKITFSEQC-YYVF 92

>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Segment polarity protein Dishevelled-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 36  SPSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVS 95
           +P    +    ++R + L D    +RDR     +        G+++VDWL +        
Sbjct: 2   APLTVKSDMSAIVRVMQLPDSGLEIRDRMW--LKITIANAVIGADVVDWLYT-HVEGFKE 58

Query: 96  RQITTGMWQALLEEGVIYH 114
           R+       ++L+ G + H
Sbjct: 59  RREARKYASSMLKHGFLRH 77

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.1 bits (142), Expect = 6e-11
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 289 KPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSW 348
           +PL+R+SED++ I+  L  +K       ++ R++     +E    KG  LF QGD G +W
Sbjct: 10  RPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLE-KGITLFRQGDIGTNW 68

Query: 349 YIIIQGSVDVVIYGKGC 365
           Y ++ GS+DV +     
Sbjct: 69  YAVLAGSLDVKVSETSS 85

>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (128), Expect = 2e-09
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 24/104 (23%)

Query: 122 FSETETIPMERIYYSLYSG-----------GRTIARRCASGSELVDWLMSLAPSLAVSRQ 170
               ETI +  +Y S+               + I   C +G+ ++DWL+S       +RQ
Sbjct: 3   IRLPETIDLGALYLSMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSN--QSVRNRQ 60

Query: 171 ITTGMWQALLEEGVIYHVN-----------GEQAFRDKCILYNF 203
               +  +LL EG +                     +    Y F
Sbjct: 61  EGLMIASSLLNEGYLQPAGDMSKSAVDGTAENPFLDNPDAFYYF 104

>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 14/63 (22%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 52  LLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGV 111
            + D    +++      + I   C +G+ ++DWL+S       +RQ    +  +LL EG 
Sbjct: 17  SMKDTEKGIKELNLEKDKKIFNHCFTGNCVIDWLVSN--QSVRNRQEGLMIASSLLNEGY 74

Query: 112 IYH 114
           +  
Sbjct: 75  LQP 77

>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (125), Expect = 7e-09
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 17/96 (17%)

Query: 127 TIPMERIYYSLYSG------------GRTIARRCASGSELVDWLMSLAPSLAVSRQITTG 174
           +  + RI   ++              G T  ++   GS LVDWL+S   + A SR     
Sbjct: 5   SSGLHRIVDKMHDTSTGIRPSPNMEQGSTY-KKTFLGSSLVDWLISS--NFAASRLEAVT 61

Query: 175 MWQALLEEGVIYHVN--GEQAFRDKCILYNFWQDKE 208
           +   L+EE  +  V      A R   +   F  D  
Sbjct: 62  LASMLMEENFLRPVGVRSMGAIRSGDLAEQFLDDST 97

>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 120

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.8 bits (116), Expect = 1e-07
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 9/81 (11%)

Query: 35  SSPSVPMARAGWVLRTLLLNDESG-TLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLA 93
           SS S  + R    +   + +  +G          G T  ++   GS LVDWL+S   + A
Sbjct: 2   SSGSSGLHR----IVDKMHDTSTGIRPSPNME-QGSTY-KKTFLGSSLVDWLISS--NFA 53

Query: 94  VSRQITTGMWQALLEEGVIYH 114
            SR     +   L+EE  +  
Sbjct: 54  ASRLEAVTLASMLMEENFLRP 74

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%)

Query: 289 KPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSW 348
           K + +  + +  + + +       HL ++ R ++    MF      GE +  QGDEG ++
Sbjct: 6   KVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFDA-MFPVSFIAGETVIQQGDEGDNF 64

Query: 349 YIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
           Y+I QG +DV +  +   +    G  FG+LAL+   PR
Sbjct: 65  YVIDQGEMDVYVNNEWATSV-GEGGSFGELALIYGTPR 101

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 3e-06
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 4/97 (4%)

Query: 293 RTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIII 352
           +T +   ++ E    +    +L      ++    MFE   ++GE +  QGD+G ++Y+I 
Sbjct: 6   KTDDQRNRLQEACKDILLFKNLDPEQMSQVLDA-MFEKLVKEGEHVIDQGDDGDNFYVID 64

Query: 353 QGSVDVVIYGKGCVTSLYAGED---FGKLALVNNAPR 386
           +G+ D+ +   G    +   ++   FG+LAL+ N PR
Sbjct: 65  RGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPR 101

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 12/95 (12%)

Query: 303 EELL-HLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY 361
           E  +  L  L  L  S R ++  V +       GE +  QGD   S++I+  G V + + 
Sbjct: 1   ESFIESLPFLKSLEVSERLKVVDV-IGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMK 59

Query: 362 GKG----------CVTSLYAGEDFGKLALVNNAPR 386
            KG           +     G+ FG+LALV N PR
Sbjct: 60  RKGKSDIEENGAVEIARCLRGQYFGELALVTNKPR 94

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 297 DLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSV 356
           D  + ++ +  +     L  +V  E+    +       G ++   G+ G   + +++GSV
Sbjct: 5   DFVRNWQLVAAVPLFQKLGPAVLVEIVRA-LRARTVPAGAVICRIGEPGDRMFFVVEGSV 63

Query: 357 DVVIYGKGCVTSLYAGEDFGKLALVNNAPR 386
            V          L  G  FG++AL++  PR
Sbjct: 64  SVATP---NPVELGPGAFFGEMALISGEPR 90

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 298 LEQIYEELLHLKPLHHLSNSVRRELAGVVMFEA-HPRKGEILFHQGDEGKSWYIIIQGSV 356
           +E +++ LL L     L +     +   V       + GE +   G+       +++G +
Sbjct: 1   METMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEI 60

Query: 357 DVVIYGKG----CVTSLYAGEDFGKLA 379
            +V   K      +  + A       +
Sbjct: 61  SIVTNAKENIYTVIEQIEAPYLIEPQS 87

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	714
d1nvus_	481	Son of sevenless protein homolog 1 (sos-1) {Human	100.0
d1o7fa1	142	Regulatory domain of epac2, domain 2 {Mouse (Mus m	99.97
d1fsha_	94	Segment polarity protein Dishevelled-1 {Mouse (Mus	99.82
d1v3fa_	120	Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}	99.7
d2csoa1	115	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.63
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.61
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.61
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.6
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.44
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.44
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.36
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.35
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.34
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.34
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.08
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	98.94
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	98.88
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	98.8
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	98.75
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	98.73
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	98.7
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	98.06
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	98.0
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	97.73
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	97.72
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	97.7
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	97.61
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	97.6
d1o7fa1	142	Regulatory domain of epac2, domain 2 {Mouse (Mus m	97.55
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	97.49
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	97.43
d1fsha_	94	Segment polarity protein Dishevelled-1 {Mouse (Mus	97.37
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	97.34
d1zyba2	147	Probable transcription regulator BT4300, N-termina	97.28
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	97.26
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	97.19
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	97.15
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	97.14
d2csoa1	115	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	96.56
d1v3fa_	120	Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}	96.05
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	95.28
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	95.28

>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Ras GEF
superfamily: Ras GEF
family: Ras GEF
domain: Son of sevenless protein homolog 1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-42  Score=389.61  Aligned_cols=234  Identities=22%  Similarity=0.399  Sum_probs=212.0

Q ss_pred             hhhcCCchhHHHHHHh--hhheeeeeccccccCCceeeeecCCccccccchhhhhhhhhhhHHHhHhhhhccccChhhHH
Q psy11552        434 ALVNNAPSYQLHMYLE--QMAVYFTTTAPDIKGPRRYKFRGPNRFQQITANLDVFLRRFNEIQYWVITEILLVTSLNKRV  511 (714)
Q Consensus       434 ~~L~~~p~~~~~~~l~--~~~ly~~itv~ei~~p~~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV~~~Il~~~~~~~R~  511 (714)
                      .|++- ++.++|+|||  ++++|+++.+.|+    +...|++......+||+.+++++||.+++||+++||.++++++|+
T Consensus       210 ~l~~~-~~~eiA~QLTl~~~~~f~~I~~~E~----l~~~~~~~~~~~~~pni~~~~~~~n~ls~wv~~~Il~~~~~~~R~  284 (481)
T d1nvus_         210 DLLTL-HPIEIARQLTLLESDLYRAVQPSEL----VGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERV  284 (481)
T ss_dssp             CTTTS-CHHHHHHHHHHHHHHHHHTCCGGGT----GGGGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             ccccC-CHHHHHHHHHHHHHHHHhcCCHHHH----HHHHHcccCCCCCCCcHHHHHHHHhHHHHHHHHHHhCCCCHHHHH
Confidence            34444 4456999999  5579999999997    556778877777899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHhcCchhhhchHHhhccCCcchHHHHHHHHhccCCCCchHHHHHHHHhCCCCcc
Q psy11552        512 QILRKMIKLAAYCKEYRNINALFAVLMGLSNVAVSRLSLTWDKLPSKSKKTYTELEALIDPSKNHRAYRQAVSKLQSPVI  591 (714)
Q Consensus       512 ~~i~~fI~iA~~~~~l~Nf~s~~aI~~gL~~~~V~RLk~Tw~~l~~~~~~~~~~l~~l~~~~~n~~~yR~~l~~~~~p~I  591 (714)
                      +++++||+||.+|+++||||+++||++||++++|+||++||+.++++.++.|++|+.+++  +||+.||..+.+.++|||
T Consensus       285 ~~i~~fI~ia~~~~~l~Nf~s~~aI~~~L~~~~I~RL~~tw~~l~~~~~~~~~~l~~l~~--~n~~~yr~~l~~~~~p~I  362 (481)
T d1nvus_         285 AVVSRIIEILQVFQELNNFNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSE--DHYKKYLAKLRSINPPCV  362 (481)
T ss_dssp             HHHHHHHHHHHHHHHTTBHHHHHHHHHHHTSHHHHTCHHHHHTSCHHHHHHHHHHHHHHH--HHHHHHHHHHHHSCSCCB
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCcchHHHHHHHhCCHHHHHHHHHHHHhcc--hhHHHHHHHHhcCCCCeE
Confidence            999999999999999999999999999999999999999999999999999999999964  799999999999999999


Q ss_pred             ccccchhhchhccccCCCCcc----CCcccHHHHHHHHHHHHHHhhhhcccCCCCccccccchhhHHHHHHHHHHHHHHH
Q psy11552        592 PFMPLLLKDLAFTHDGNKTVV----DGLVNFEKMHMFAQTLRTLRYCRTRHLDHDKTVVDGLVNFEKMHMFAQTLRTLRY  667 (714)
Q Consensus       592 Pflg~~L~Dl~~i~egn~~~~----~glINf~K~~~i~~ii~~i~~~q~~~~~~~~~~~~~l~nf~k~~~~~~~i~~i~~  667 (714)
                      ||||++|+||+++++|||+++    +|+|||+|++++                                  ++.+..++.
T Consensus       363 P~lg~~l~Dl~~~~~gn~~~~~~~~~~lINf~K~~~i----------------------------------~~~i~~i~~  408 (481)
T d1nvus_         363 PFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKV----------------------------------AEITGEIQQ  408 (481)
T ss_dssp             CCSHHHHHHHHHHHHSSCSEEEETTEEEEEHHHHHHH----------------------------------HHHHHHHHH
T ss_pred             eeeccHHHHHHHHHhcCCccccCCCCceEcHHHHHHH----------------------------------HHHHHHHHH
Confidence            999999999999999999997    579999999999                                  555556666


Q ss_pred             HhhcCCCCCCCCCCChHHHHHHHhhCCCCCC------HHHHHHHHhhcCCCC
Q psy11552        668 CRTRHLVLDPPTPKCESEVKSYVSCLRAMDN------QRILTSMSQKLEPRR  713 (714)
Q Consensus       668 ~q~~~~~~~~~~~~~~~~i~~yi~~~~~~~~------~~~L~~lS~~lEPr~  713 (714)
                      ||+.+|++.+     .++|++||.++.++++      ++.||++|+++|||.
T Consensus       409 ~Q~~~y~~~~-----~~~i~~~l~~~~~~~~~~~~~~~d~l~~lS~~~EPr~  455 (481)
T d1nvus_         409 YQNQPYCLRV-----ESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRN  455 (481)
T ss_dssp             HHSCCCCCCC-----CHHHHHHHHTCCTTTTCCHHHHHHHHHHHHHHHSCCT
T ss_pred             HhcCCCCCCc-----ChHHHHHHHhhhhhhhhhhccchHHHHHHHHHhCCCC
Confidence            7778888887     8999999999988764      688999999999985

>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Regulatory domain of epac2, domain 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-32  Score=255.20  Aligned_cols=137  Identities=39%  Similarity=0.708  Sum_probs=130.5

Q ss_pred             CcHHHHHHHHHHHHHhhcCCCCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccc
Q psy11552         37 PSVPMARAGWVLRTLLLNDESGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGK  116 (714)
Q Consensus        37 ~~~~~~~~~~~l~~~~~~~~~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~  116 (714)
                      |+.+|+++|++||..+++..+.+||||+|++  ++|++||+|+||||||++++.+                         
T Consensus         2 ps~~i~~ag~~l~~~l~s~~~~likdr~~~l--~~y~~cF~G~elVdWL~~~~~~-------------------------   54 (142)
T d1o7fa1           2 PSEKILRAGKILRIAILSRAPHMIRDRKYHL--KTYRQCCVGTELVDWMIQQTSC-------------------------   54 (142)
T ss_dssp             CCSHHHHHHHHHHHHHHHHCGGGSEEEECSS--CEEEEEEEHHHHHHHHHHSSSC-------------------------
T ss_pred             CcHHHHHHHHHHHHHHHccCCcccceeEECC--EEeCCeeEhHHHHHHHHHhCCC-------------------------
Confidence            5779999999999999999999999999999  9999999999999999999885                         


Q ss_pred             eeeEeecCCCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccC
Q psy11552        117 ISCFFFSETETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRD  196 (714)
Q Consensus       117 ~~y~f~~~~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d  196 (714)
                                                                       +.+|+||+++||.|++.|+|+||.++|.|+|
T Consensus        55 -------------------------------------------------~~sR~eAv~lgq~Ll~~g~i~hV~~~~~F~D   85 (142)
T d1o7fa1          55 -------------------------------------------------VHSRTQAVGMWQVLLEDGVLNHVDQERHFQD   85 (142)
T ss_dssp             -------------------------------------------------CSCHHHHHHHHHHHHHTTSEEESSCCSSCCS
T ss_pred             -------------------------------------------------CCCHHHHHHHHHHHHHCCCeeecCCCcCEec
Confidence                                                             6899999999999999999999999999999


Q ss_pred             cCceeeeccCccCCCCCCchhhhHHHHHHHHHHHHHHHhhCChHHHHHHHHHH
Q psy11552        197 KCILYNFWQDKEGSSSQATAQDIAEAEEHLEEALLALARRAPDAILRYILRKQ  249 (714)
Q Consensus       197 ~~~~Yrf~~d~~~~~~~~~~~~~~~~ee~l~e~l~~l~q~~~~~~~r~ilr~~  249 (714)
                      ++.||||..|+....++++..+....+|++++++..|+|++|++.+||++||+
T Consensus        86 ~~~lYrF~~d~~~~~~~~~~~~~~~~~Ee~~~~~~~L~q~~Pd~~~~~~lrk~  138 (142)
T d1o7fa1          86 KYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQMGPDAHMRMILRKP  138 (142)
T ss_dssp             SSCEEEEGGGSSSSCCCCCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCEEEEEccCCCccCCCCCccccchhHHHHHHHHHHHhccCchHHHHHHhcCC
Confidence            99999999999988888888888889999999999999999999999999996

>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Segment polarity protein Dishevelled-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=6.7e-21  Score=163.20  Aligned_cols=78  Identities=19%  Similarity=0.331  Sum_probs=68.6

Q ss_pred             HhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCCCch
Q psy11552         51 LLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETETIP  129 (714)
Q Consensus        51 ~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~~~~  129 (714)
                      .|.+.. +..|+||+|++  ++|++||+|+|+||||+++...                                      
T Consensus        16 ~M~~~~~Gl~i~dr~~~~--~~y~~~F~G~e~V~WL~~~~~~--------------------------------------   55 (94)
T d1fsha_          16 VMQLPDSGLEIRDRMWLK--ITIANAVIGADVVDWLYTHVEG--------------------------------------   55 (94)
T ss_dssp             HHHSTTSSSCSSCEEETT--EEESSCCHHHHHHHHHHHHCCC--------------------------------------
T ss_pred             HHhCCCCCCeeEeEEecc--EEcccceehHHHHHHHHHhccc--------------------------------------
Confidence            443444 66699999999  9999999999999999998553                                      


Q ss_pred             hhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecCCCccccCcCceeeecc
Q psy11552        130 MERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVNGEQAFRDKCILYNFWQ  205 (714)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~~~~~F~d~~~~Yrf~~  205 (714)
                                                          +.+|+||+.+||.|++.|+|+||.++|.|.|+ .||||.+
T Consensus        56 ------------------------------------~~~r~eAv~lgq~Ll~~g~i~hv~~~~~F~D~-~~YrF~~   94 (94)
T d1fsha_          56 ------------------------------------FKERREARKYASSMLKHGFLRHTVNKITFSEQ-CYYVFGD   94 (94)
T ss_dssp             ------------------------------------CSSHHHHHHHHHHHHHTTTEECSSSSCCCCSS-SCCEECC
T ss_pred             ------------------------------------cCCHHHHHHHHHHHHHCCceEECCCCCccccC-CeEEeCC
Confidence                                                68999999999999999999999999999997 5899963

>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2e-17  Score=147.99  Aligned_cols=85  Identities=25%  Similarity=0.316  Sum_probs=69.8

Q ss_pred             HHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecCCC
Q psy11552         48 LRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSETE  126 (714)
Q Consensus        48 l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~~~  126 (714)
                      +...|.+.. +..+++|++++  ++|++||+|+||||||++++.                                    
T Consensus        11 i~~~m~~~~~Gv~~~~~~~~~--~~y~~cF~G~e~VdWL~~~~~------------------------------------   52 (120)
T d1v3fa_          11 IVDKMHDTSTGIRPSPNMEQG--STYKKTFLGSSLVDWLISSNF------------------------------------   52 (120)
T ss_dssp             HHHHHTCSSSSCCCCCCCSSS--SCCSSCEEHHHHHHHHHHTTS------------------------------------
T ss_pred             HHHHHhCCCCCceeEEEEECC--EEcCcEEEhHHHHHHHHHhcC------------------------------------
Confidence            444454444 66799999999  999999999999999999877                                    


Q ss_pred             CchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecC-----------CCcccc
Q psy11552        127 TIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVN-----------GEQAFR  195 (714)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~-----------~~~~F~  195 (714)
                                                             +.+|+||+.|||.|++.|+|+||.           ..+.|.
T Consensus        53 ---------------------------------------~~~R~eA~~lgq~Ll~~g~i~~V~~~~~~~~~~~~~~~~F~   93 (120)
T d1v3fa_          53 ---------------------------------------AASRLEAVTLASMLMEENFLRPVGVRSMGAIRSGDLAEQFL   93 (120)
T ss_dssp             ---------------------------------------CSSHHHHHHHHHHHHHHTSEEECSSSSCSSCCCSSCCCCCC
T ss_pred             ---------------------------------------CCCHHHHHHHHHHHHHCCCEEEcccccchhhccccccccee
Confidence                                                   689999999999999999999994           367898


Q ss_pred             Cc-CceeeeccCccC
Q psy11552        196 DK-CILYNFWQDKEG  209 (714)
Q Consensus       196 d~-~~~Yrf~~d~~~  209 (714)
                      |+ ..||||......
T Consensus        94 d~~~~lYrF~~~~~~  108 (120)
T d1v3fa_          94 DDSTALYTFAESYKK  108 (120)
T ss_dssp             CSSSCEEEECSSSCC
T ss_pred             cCCCCEEEECCCCCC
Confidence            77 579999866543

>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.2e-17  Score=146.52  Aligned_cols=85  Identities=24%  Similarity=0.309  Sum_probs=71.1

Q ss_pred             HHHHHHhhcCC-CCccccccccCCccccccccchhhHHHHHHhhCCCcccchhHHHHHHHHHhhcccccccceeeEeecC
Q psy11552         46 WVLRTLLLNDE-SGTLRDRKTSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHGKISCFFFSE  124 (714)
Q Consensus        46 ~~l~~~~~~~~-~~~i~dr~~~~~~~~~~~~f~g~e~v~wl~~~~~~~~~~~~~a~~~~~~l~~~g~~~hv~~~y~f~~~  124 (714)
                      ..|...|.+.. +..+++|++++  ++|++||+|+|+|+||++++.                                  
T Consensus        12 ~~l~~~m~d~~~Gi~~~~~~~~~--~~y~~cF~G~e~V~WL~~~~~----------------------------------   55 (115)
T d2csoa1          12 GALYLSMKDTEKGIKELNLEKDK--KIFNHCFTGNCVIDWLVSNQS----------------------------------   55 (115)
T ss_dssp             HHHHHHHHSSSSSCCCEEEEETT--EEEEEEEEHHHHHHHHHHTTS----------------------------------
T ss_pred             HHHHHHhhCCCCCceeeEeeeCC--eeccccccHHHHHHHHHHcCC----------------------------------
Confidence            45555666555 66699999999  999999999999999999877                                  


Q ss_pred             CCCchhhhHHHHhhcCCCcccccccchhhHHHHHHhhCCCccCCHHHHHHHHHHHHhcCcceecC----------CCccc
Q psy11552        125 TETIPMERIYYSLYSGGRTIARRCASGSELVDWLMSLAPSLAVSRQITTGMWQALLEEGVIYHVN----------GEQAF  194 (714)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~cf~G~e~vdwl~~~~~~~~~~r~~av~l~q~Ll~~g~i~hv~----------~~~~F  194 (714)
                                                               +.+|+||+.+||.|++.|+|+||.          .++.|
T Consensus        56 -----------------------------------------~~~r~eAv~lgq~Ll~~g~I~~V~d~~~~~~~~~~~~~F   94 (115)
T d2csoa1          56 -----------------------------------------VRNRQEGLMIASSLLNEGYLQPAGDMSKSAVDGTAENPF   94 (115)
T ss_dssp             -----------------------------------------CSSHHHHHHHHHHHHHHTSSEEESHHHHHHHHSSCSCCC
T ss_pred             -----------------------------------------CCCHHHHHHHHHHHHHCCCeEECcccccccccccccccc
Confidence                                                     689999999999999999999994          46889


Q ss_pred             cCc-CceeeeccCc
Q psy11552        195 RDK-CILYNFWQDK  207 (714)
Q Consensus       195 ~d~-~~~Yrf~~d~  207 (714)
                      .|+ +.||||+...
T Consensus        95 ~d~~~~lYrF~~~g  108 (115)
T d2csoa1          95 LDNPDAFYYFPDSG  108 (115)
T ss_dssp             CCCTTCEEECSSSC
T ss_pred             ccCCCCEEEeCCCC
Confidence            987 6899997653

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=8.4e-16  Score=138.71  Aligned_cols=100  Identities=62%  Similarity=1.074  Sum_probs=91.7

Q ss_pred             CHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCC
Q psy11552        294 TSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGE  373 (714)
Q Consensus       294 ~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd  373 (714)
                      |.++++.+.+.|+++++|++|+++.+.+|+..+..+.++++|++|+++||+++.+|+|++|.|++...+...+..+++|+
T Consensus         1 t~~d~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v~~~~~~~~~~~~~~~G~   80 (124)
T d1o7fa3           1 TVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGD   80 (124)
T ss_dssp             CHHHHHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTC
T ss_pred             CHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceEEEEEeeeeecccccCCc
Confidence            46789999999999999999999999999995555656788999999999999999999999999987776788999999


Q ss_pred             ccchhhhccCCCcceeeecc
Q psy11552        374 DFGKLALVNNAPRLIITSMV  393 (714)
Q Consensus       374 ~FGElaLl~~~pr~atv~Ai  393 (714)
                      +|||.+++.+.||++|++|+
T Consensus        81 ~fGe~~ll~~~~r~~t~~a~  100 (124)
T d1o7fa3          81 DFGKLALVNDAPRAASIVLR  100 (124)
T ss_dssp             EECGGGGTCCSCCSSEEEES
T ss_pred             chhhhHhhCCCceeeEEEEE
Confidence            99999999999999999984

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.2e-15  Score=139.96  Aligned_cols=102  Identities=26%  Similarity=0.487  Sum_probs=94.5

Q ss_pred             CCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EE
Q psy11552        290 PLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CV  366 (714)
Q Consensus       290 ~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v  366 (714)
                      -++++.++...+.+.|.++++|++|+++++.+|+. .+....+++|++|+++||+++++|+|.+|.|+++...++   .+
T Consensus         3 ~~~kt~~~~~~l~~~l~~~~~F~~l~~~~~~~l~~-~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~~~~~~~~~~   81 (136)
T d1cx4a1           3 IHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLD-AMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCV   81 (136)
T ss_dssp             CCCCCHHHHHHHHHHHTTCGGGTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEEEETTEEEEE
T ss_pred             cccCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHhc-ceEEEEECCCCEEEECCCcchhhhhhhhheeEEeeccccceeee
Confidence            35688999999999999999999999999999999 678889999999999999999999999999999876543   67


Q ss_pred             EEecCCCccchhhhccCCCcceeeec
Q psy11552        367 TSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       367 ~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      ..+++|++||+++++.+.||+++++|
T Consensus        82 ~~l~~g~~fg~~~l~~~~~~~~s~~a  107 (136)
T d1cx4a1          82 GNYDNRGSFGELALMYNTPRAATITA  107 (136)
T ss_dssp             EEEESSCEECHHHHHHCCCCCSEEEE
T ss_pred             eccCCccccchHHHhCCCcceEEEEE
Confidence            88999999999999999999999998

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.7e-15  Score=140.85  Aligned_cols=109  Identities=28%  Similarity=0.512  Sum_probs=98.9

Q ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEe
Q psy11552        282 EEERQIGKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIY  361 (714)
Q Consensus       282 ~~~~~~~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~  361 (714)
                      ....+.++|..|+.++++.+...|.++++|++++++.+.+|+. .+....|++|++|+++||.++++|+|++|.|+|...
T Consensus         3 ~i~~L~k~p~~Rt~~~~~~i~~~L~~~~~F~~l~~~~l~~l~~-~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v~v~~~   81 (155)
T d1o7fa2           3 WIACLDKRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICL-CGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVS   81 (155)
T ss_dssp             HHHHHTSCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHH-HCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEC
T ss_pred             hHHHhcCChhhCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHH-hcEEEEECCCCEEEeCCCcceeeEEEeccchheeee
Confidence            3456778899999999999999999999999999999999999 566779999999999999999999999999999764


Q ss_pred             Cc---e---EEEEecCCCccchhhhccCCCcceeeec
Q psy11552        362 GK---G---CVTSLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       362 ~~---~---~v~~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      ..   +   .+..+++|++||| +++.+.||++|++|
T Consensus        82 ~~~~~~~~~~v~~l~~g~~fGe-~~l~~~~~~~tv~a  117 (155)
T d1o7fa2          82 ETSSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVT  117 (155)
T ss_dssp             SSSCGGGCEEEEEECTTCEECG-GGGGTCBCSSEEEE
T ss_pred             cccccccccccccccccccchh-hhhcCCCceEEEEE
Confidence            32   1   7889999999999 89999999999987

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.60  E-value=1.6e-15  Score=139.40  Aligned_cols=103  Identities=28%  Similarity=0.481  Sum_probs=95.7

Q ss_pred             CCCCCCCHHHHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEE
Q psy11552        288 GKPLDRTSEDLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVT  367 (714)
Q Consensus       288 ~~~~~r~~~~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~  367 (714)
                      ....++..+.++.+.+.|.++++|++|+++++.+|+. .+....+++|++||++||+++.+|||++|.|.+...+. .+.
T Consensus         5 ~~~~~~~~~~~~~l~~~l~~~~lF~~l~~~~l~~l~~-~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~~~~-~~~   82 (136)
T d1ne6a1           5 RKVIPKDYKTMAALAKAIEKNVLFSHLDDNERSDIFD-AMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVNNE-WAT   82 (136)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHCGGGTSCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEETTE-EEE
T ss_pred             cccCCCCHHHHHHHHHHHhCCHhhhhCCHHHHHHHhc-ceEEEEECCCCEEEeCCCCcceeeeecCCceeeecccc-ccc
Confidence            3466788888999999999999999999999999999 67888999999999999999999999999999988665 788


Q ss_pred             EecCCCccchhhhccCCCcceeeec
Q psy11552        368 SLYAGEDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       368 ~l~~Gd~FGElaLl~~~pr~atv~A  392 (714)
                      .+++|++|||++++.+.||++|++|
T Consensus        83 ~l~~G~~fGe~~ll~~~~~~~tv~a  107 (136)
T d1ne6a1          83 SVGEGGSFGELALIYGTPRAATVKA  107 (136)
T ss_dssp             EECTTCEECCHHHHHCCCCCSEEEE
T ss_pred             eeccccccccHHHcCCCcceEEEEE
Confidence            9999999999999999999999998

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.7e-13  Score=126.80  Aligned_cols=89  Identities=30%  Similarity=0.424  Sum_probs=81.1

Q ss_pred             HHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce----------EEEEecCC
Q psy11552        303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG----------CVTSLYAG  372 (714)
Q Consensus       303 ~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~----------~v~~l~~G  372 (714)
                      .+|.++|+|++|+++++..|+. .+..+.|++|++|+++||+++++|+|++|.|+++....+          .+..+++|
T Consensus         2 ~~l~~~p~f~~l~~~~l~~l~~-~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g   80 (147)
T d1cx4a2           2 SFIESLPFLKSLEVSERLKVVD-VIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRG   80 (147)
T ss_dssp             HHHHTCGGGTTSCHHHHHHHHH-HCEEEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTT
T ss_pred             hhHhcCHhhcCCCHHHHHHHHH-hCEEEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCC
Confidence            4788999999999999999999 567779999999999999999999999999999875431          58899999


Q ss_pred             CccchhhhccCCCcceeeec
Q psy11552        373 EDFGKLALVNNAPRLIITSM  392 (714)
Q Consensus       373 d~FGElaLl~~~pr~atv~A  392 (714)
                      ++|||.+++.+.||++|++|
T Consensus        81 ~~fGe~~~~~~~~~~~t~~a  100 (147)
T d1cx4a2          81 QYFGELALVTNKPRAASAHA  100 (147)
T ss_dssp             CEESCHHHHHTCCCSSEEEE
T ss_pred             cEeeehhhcCCCCceEEEEE
Confidence            99999999999999999987

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.44  E-value=1.2e-13  Score=125.52  Aligned_cols=89  Identities=27%  Similarity=0.374  Sum_probs=82.1

Q ss_pred             HHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce-----EEEEecCCCccch
Q psy11552        303 EELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG-----CVTSLYAGEDFGK  377 (714)
Q Consensus       303 ~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~-----~v~~l~~Gd~FGE  377 (714)
                      ++|.++|+|++|+++++..|++ .+....|++|++|+++||+++++|+|.+|.|+++..+.+     .+..+++|++||+
T Consensus         2 ~~L~~i~~f~~L~~~~~~~l~~-~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~   80 (132)
T d1ne6a2           2 EFLSKVSILESLDKWERLTVAD-ALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGE   80 (132)
T ss_dssp             HHHHTSGGGGGSCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECH
T ss_pred             hhHhCCHhhhCCCHHHHHHHHH-hCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeE
Confidence            5789999999999999999999 678889999999999999999999999999999886443     4788999999999


Q ss_pred             hhhccCCCcceeeec
Q psy11552        378 LALVNNAPRLIITSM  392 (714)
Q Consensus       378 laLl~~~pr~atv~A  392 (714)
                      .+++.+.||++|++|
T Consensus        81 ~~~~~~~~~~~t~~a   95 (132)
T d1ne6a2          81 IALLMNRPRAATVVA   95 (132)
T ss_dssp             HHHHHTSSCSSEEEE
T ss_pred             eeecCCCceeEEEEE
Confidence            999999999999988

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=5.6e-13  Score=129.15  Aligned_cols=92  Identities=17%  Similarity=0.239  Sum_probs=83.3

Q ss_pred             HHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccchh
Q psy11552        299 EQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKL  378 (714)
Q Consensus       299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FGEl  378 (714)
                      ....+.|.++|+|+++++..+..|+. .+....+.+|++|+++||+++++|||.+|.|+|...+. .+..+++|++|||.
T Consensus        64 ~~~~~~l~~~~~F~~~~~~~l~~l~~-~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~-~~~~l~~G~~fGe~  141 (193)
T d1q3ea_          64 FNCRKLVASMPLFANADPNFVTAMLT-KLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGN-KEMKLSDGSYFGEI  141 (193)
T ss_dssp             HHTHHHHHHCHHHHTSCHHHHHHHHT-TCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CC-CEEEECTTCEECHH
T ss_pred             HHHHHHHhcchHHHhhhHHHHHHHHH-HHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCc-ceeeeccceeeeee
Confidence            34556778899999999999999999 67887999999999999999999999999999987665 67889999999999


Q ss_pred             hhccCCCcceeeec
Q psy11552        379 ALVNNAPRLIITSM  392 (714)
Q Consensus       379 aLl~~~pr~atv~A  392 (714)
                      +++.+.||++|++|
T Consensus       142 ~~~~~~~~~~~~~a  155 (193)
T d1q3ea_         142 CLLTRGRRTASVRA  155 (193)
T ss_dssp             HHHHCSBCSSEEEE
T ss_pred             eccCCCccccccee
Confidence            99999999999998

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.35  E-value=8.2e-13  Score=120.16  Aligned_cols=92  Identities=22%  Similarity=0.388  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCceEEEEecCCCccc
Q psy11552        297 DLEQIYEELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFG  376 (714)
Q Consensus       297 ~~~~i~~~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~~v~~l~~Gd~FG  376 (714)
                      +.....+.|.++|+|++|+++++..|+. .+....|++|++|+++|++++.+|+|.+|.|+++..+.   .++++|++||
T Consensus         5 ~~~~~~~~l~~~p~F~~l~~~~l~~l~~-~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~~~~---~~l~~G~~~G   80 (133)
T d1vp6a_           5 DFVRNWQLVAAVPLFQKLGPAVLVEIVR-ALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNP---VELGPGAFFG   80 (133)
T ss_dssp             HHHHHHHHHTTCGGGGGCCHHHHHHHHH-HCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSSC---EEECTTCEEC
T ss_pred             HHHHHHHHHHCCCccccCCHHHHHHHHH-hCEEEEECCCCEEEeCCCCCccceeeeccccEEEEeee---eeeccCcccc
Confidence            3445678899999999999999999999 67777999999999999999999999999999976654   4689999999


Q ss_pred             hhhhccCCCcceeeec
Q psy11552        377 KLALVNNAPRLIITSM  392 (714)
Q Consensus       377 ElaLl~~~pr~atv~A  392 (714)
                      +.+++.+.|+.++++|
T Consensus        81 ~~~~l~~~~~~~~~~a   96 (133)
T d1vp6a_          81 EMALISGEPRSATVSA   96 (133)
T ss_dssp             HHHHHHCCCCSSCEEE
T ss_pred             cccccCCCcccceEEE
Confidence            9999999999999988

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.34  E-value=1.5e-12  Score=120.28  Aligned_cols=94  Identities=15%  Similarity=0.230  Sum_probs=82.4

Q ss_pred             HHHHHHHhCCccCCCCCHHHHHHHHhhc-ceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce----EEEEecCCC
Q psy11552        299 EQIYEELLHLKPLHHLSNSVRRELAGVV-MFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGE  373 (714)
Q Consensus       299 ~~i~~~L~~~~~F~~Ls~~~l~~L~~~~-~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~----~v~~l~~Gd  373 (714)
                      +.+.+.|.++|+|++|+++++..|+... ...+.|++|++|+++||+++++|+|++|.|+++.....    .+..+++|+
T Consensus         2 ~~~~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~   81 (147)
T d1zyba2           2 ETMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPY   81 (147)
T ss_dssp             HHHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSE
T ss_pred             hhHHHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCC
Confidence            5678889999999999999999999744 34567999999999999999999999999999886432    789999999


Q ss_pred             ccchhhhccCCCc-ceeeec
Q psy11552        374 DFGKLALVNNAPR-LIITSM  392 (714)
Q Consensus       374 ~FGElaLl~~~pr-~atv~A  392 (714)
                      +|||++++.+.++ +++++|
T Consensus        82 ~fGe~~~~~~~~~~~~~v~a  101 (147)
T d1zyba2          82 LIEPQSLFGMNTNYASSYVA  101 (147)
T ss_dssp             EECGGGGSSSCCBCSSEEEE
T ss_pred             Eeccchhhcccccccceeee
Confidence            9999999988876 677777

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.34  E-value=3.3e-13  Score=123.75  Aligned_cols=89  Identities=13%  Similarity=0.149  Sum_probs=77.3

Q ss_pred             HHhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce-----EEEEecCCCccchh
Q psy11552        304 ELLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG-----CVTSLYAGEDFGKL  378 (714)
Q Consensus       304 ~L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~-----~v~~l~~Gd~FGEl  378 (714)
                      .|+++|+|++|+++.+.+|+. .+....|++|++|+++||+++.+|||.+|.|++.....+     .+..+++|++|||+
T Consensus         7 ~l~~vp~F~~l~~~~l~~l~~-~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~   85 (137)
T d1wgpa_           7 GVRRVPLFENMDERLLDAICE-RLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             SCSSCSGGGSCCHHHHHHHHH-HCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHCCHhHhCCCHHHHHHHHH-hcEEEEECCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcch
Confidence            578899999999999999999 667779999999999999999999999999999775432     57889999999999


Q ss_pred             hhcc---------CCCcceeeecc
Q psy11552        379 ALVN---------NAPRLIITSMV  393 (714)
Q Consensus       379 aLl~---------~~pr~atv~Ai  393 (714)
                      +|+.         ..+|++||+|+
T Consensus        86 ~ll~~~~~~~~~~~~~r~~tv~a~  109 (137)
T d1wgpa_          86 LLTWALDPKSGSNLPSSTRTVKAL  109 (137)
T ss_dssp             HHHHHHCSSCCSSSCBCSSEEEES
T ss_pred             hHhccCCCcccccccccCcEEEEe
Confidence            9873         23577888884

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.08  E-value=6.7e-11  Score=108.28  Aligned_cols=83  Identities=14%  Similarity=0.169  Sum_probs=73.8

Q ss_pred             ccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce----EEEEecCCCccchhhhccCC
Q psy11552        309 KPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG----CVTSLYAGEDFGKLALVNNA  384 (714)
Q Consensus       309 ~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~----~v~~l~~Gd~FGElaLl~~~  384 (714)
                      .+|+.|+++++..++. ......+++|++|+.+|++++.+|+|.+|.|.++..+.+    .+..+++|++||+.+++.+.
T Consensus         7 elf~~l~~~~~~~l~~-~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~   85 (142)
T d2gaua2           7 DVWSLLNEEERELLDK-EIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEE   85 (142)
T ss_dssp             HHHTTCCHHHHHHHHH-HCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTS
T ss_pred             HHHccCCHHHHHHHHh-cCEEEEECCCCEEEeCCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhhccC
Confidence            4699999999999999 667779999999999999999999999999999875332    67889999999999999999


Q ss_pred             Ccceeeec
Q psy11552        385 PRLIITSM  392 (714)
Q Consensus       385 pr~atv~A  392 (714)
                      |+.++++|
T Consensus        86 ~~~~~~~a   93 (142)
T d2gaua2          86 TCSSTAIA   93 (142)
T ss_dssp             CCSSEEEE
T ss_pred             CceeEEEe
Confidence            99999887

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=8.1e-10  Score=99.20  Aligned_cols=77  Identities=23%  Similarity=0.358  Sum_probs=66.7

Q ss_pred             CHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccC-CCccee
Q psy11552        315 SNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNN-APRLII  389 (714)
Q Consensus       315 s~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~-~pr~at  389 (714)
                      ++++++.|++ ....+.|++|++|+++||+++.+|||++|.|+++..+. |   .+..+++|++||+.+++.+ .|+.++
T Consensus         2 sd~~le~l~~-~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~   80 (132)
T d1i5za2           2 TDPTLEWFLS-HCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAW   80 (132)
T ss_dssp             CCHHHHHHHT-TSEEEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSE
T ss_pred             CHHHHHHHHH-hCEEEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEE
Confidence            4678888888 56777999999999999999999999999999987643 2   6888999999999999875 677888


Q ss_pred             eec
Q psy11552        390 TSM  392 (714)
Q Consensus       390 v~A  392 (714)
                      ++|
T Consensus        81 ~~a   83 (132)
T d1i5za2          81 VRA   83 (132)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            877

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.88  E-value=2.2e-09  Score=96.90  Aligned_cols=75  Identities=23%  Similarity=0.346  Sum_probs=62.5

Q ss_pred             HHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccC----CCcce
Q psy11552        317 SVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNN----APRLI  388 (714)
Q Consensus       317 ~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~----~pr~a  388 (714)
                      ++++.|+. .+..+.|++|++|+++||+.+.+|+|++|.|+++.... |   .+..++||++||+++++.+    .|+++
T Consensus         3 ~~le~l~~-~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~   81 (134)
T d2oz6a2           3 KHLDKLLA-HCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSA   81 (134)
T ss_dssp             HHHHHHHH-SSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCS
T ss_pred             HHHHHHHH-hCEEEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCcccccccee
Confidence            46777887 56777999999999999999999999999999987543 2   7888999999999999864    46677


Q ss_pred             eeec
Q psy11552        389 ITSM  392 (714)
Q Consensus       389 tv~A  392 (714)
                      +++|
T Consensus        82 ~~~a   85 (134)
T d2oz6a2          82 WVRA   85 (134)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7766

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.75  E-value=4.5e-09  Score=93.80  Aligned_cols=73  Identities=19%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             HHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhhccCCCc-ceeeec
Q psy11552        319 RRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLALVNNAPR-LIITSM  392 (714)
Q Consensus       319 l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaLl~~~pr-~atv~A  392 (714)
                      +++|+. ......|++|++|+++|++++++|+|++|.|.++.... |   .+..+++|++||+.+++.+.|+ +++++|
T Consensus         3 l~~l~~-~~~~~~~~kg~~l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a   80 (129)
T d1o5la1           3 LKKLLP-CGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVA   80 (129)
T ss_dssp             GGGGGG-GSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEE
T ss_pred             HHHHHh-CCEEEEECCCCEEEECCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHhccCCCccEEEEe
Confidence            356677 46677999999999999999999999999999977533 2   7888999999999999988875 577776

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=98.73  E-value=4.1e-09  Score=95.81  Aligned_cols=84  Identities=17%  Similarity=0.143  Sum_probs=68.2

Q ss_pred             HhCCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCc-e---EEEEecCCCccchhhh
Q psy11552        305 LLHLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGK-G---CVTSLYAGEDFGKLAL  380 (714)
Q Consensus       305 L~~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~-~---~v~~l~~Gd~FGElaL  380 (714)
                      +..+.++.-++.++++.++. .+..+.|++|++|+++||+.+++|+|++|.|+++.... |   .+..+++|++||+++.
T Consensus         3 ~~~~~p~~~~p~e~l~~l~~-~~~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~~   81 (139)
T d3e5ua2           3 CGAIIPDNFFPIEKLRNYTQ-MGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYP   81 (139)
T ss_dssp             CCCSSSBSCSCCGGGGGGGG-GSEEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCSC
T ss_pred             hhhcCCCCCCCHHHHHHHHH-hCEEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhhh
Confidence            34566788888888999999 67788999999999999999999999999999987543 2   6788999999999643


Q ss_pred             ccCCCcceeeec
Q psy11552        381 VNNAPRLIITSM  392 (714)
Q Consensus       381 l~~~pr~atv~A  392 (714)
                         .++..+++|
T Consensus        82 ---~~~~~~~~a   90 (139)
T d3e5ua2          82 ---TGNNIYATA   90 (139)
T ss_dssp             ---CSCEEEEEE
T ss_pred             ---hcccccccc
Confidence               355555444

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.70  E-value=2.4e-09  Score=96.66  Aligned_cols=71  Identities=13%  Similarity=0.207  Sum_probs=63.6

Q ss_pred             CCccCCCCCHHHHHHHHhhcceEEeecCCCEEEccCCcCCeEEEEEEeEEEEEEeCce---EEEEecCCCccchh
Q psy11552        307 HLKPLHHLSNSVRRELAGVVMFEAHPRKGEILFHQGDEGKSWYIIIQGSVDVVIYGKG---CVTSLYAGEDFGKL  378 (714)
Q Consensus       307 ~~~~F~~Ls~~~l~~L~~~~~~~~~~~~G~iI~~qGd~g~~~YiI~~G~V~V~~~~~~---~v~~l~~Gd~FGEl  378 (714)
                      +.++|+.|++++++.+++ .+..++|++|++|+++|+.++++|+|++|.|+++..++|   .+..+++|++||+.
T Consensus         3 r~~~~~~L~~~~~~~~~~-~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~   76 (132)
T d1ft9a2           3 RFNIANVLLSPDGETFFR-GFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMH   76 (132)
T ss_dssp             CCCTHHHHTSTTTTTTTT-TCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESC
T ss_pred             CcChhHhCCHHHHHHHHH-hCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccccccceeecccccccccccc
Confidence            468899999999999999 567779999999999999999999999999999876544   78889999999974

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=1.1e-06  Score=77.45  Aligned_cols=74  Identities=49%  Similarity=0.830  Sum_probs=62.1

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      |+++|++++.+|+|.+|.+++...+......+++|+.||+.+++.+.|+.              .++.++...+.++.++
T Consensus        45 I~~~gd~~~~lyii~~G~v~~~~~~~~~~~~~~~G~~fGe~~ll~~~~r~--------------~t~~a~~~~~~l~~i~  110 (124)
T d1o7fa3          45 LFNQGEEGTSWYIILKGSVNVVIYGKGVVCTLHEGDDFGKLALVNDAPRA--------------ASIVLREDNCHFLRVD  110 (124)
T ss_dssp             EECTTSCCCEEEEEEESEEEEEETTTEEEEEEETTCEECGGGGTCCSCCS--------------SEEEESSSSEEEEEEE
T ss_pred             EEECCCcCceEEEEEcceEEEEEeeeeecccccCCcchhhhHhhCCCcee--------------eEEEEEeCcEEEEEEc
Confidence            88999999999999999999988776777788999999999999999998              6777754445677788


Q ss_pred             CCcccccc
Q psy11552        473 PNRFQQIT  480 (714)
Q Consensus       473 r~~f~~~t  480 (714)
                      +..|....
T Consensus       111 ~~~f~~il  118 (124)
T d1o7fa3         111 KEDFNRIL  118 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87765543

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=1.8e-06  Score=77.61  Aligned_cols=73  Identities=33%  Similarity=0.506  Sum_probs=62.3

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      |+++|+.++.+|+|.+|.+++.... ..+..+++|++|||.+++.+.|+.              +++.+ .+++.++.++
T Consensus        54 I~~~gd~~~~~yiI~~G~v~v~~~~-~~~~~l~~G~~fGe~~ll~~~~~~--------------~tv~a-~~~~~l~~i~  117 (136)
T d1ne6a1          54 VIQQGDEGDNFYVIDQGEMDVYVNN-EWATSVGEGGSFGELALIYGTPRA--------------ATVKA-KTNVKLWGID  117 (136)
T ss_dssp             EECTTSCCCEEEEEEESCEEEEETT-EEEEEECTTCEECCHHHHHCCCCC--------------SEEEE-SSCEEEEEEE
T ss_pred             EEeCCCCcceeeeecCCceeeeccc-cccceeccccccccHHHcCCCcce--------------EEEEE-ccCEEEEEEE
Confidence            8899999999999999999998765 567789999999999999999988              78888 5677888888


Q ss_pred             CCccccccc
Q psy11552        473 PNRFQQITA  481 (714)
Q Consensus       473 r~~f~~~tp  481 (714)
                      ++.|.....
T Consensus       118 ~~~f~~ll~  126 (136)
T d1ne6a1         118 RDSYRRILM  126 (136)
T ss_dssp             HHHHHHHTH
T ss_pred             HHHHHHHHh
Confidence            877755443

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=9.5e-06  Score=72.47  Aligned_cols=73  Identities=30%  Similarity=0.506  Sum_probs=59.5

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec---ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG---KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK  469 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~---~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~  469 (714)
                      |+++|++++.+|+|.+|.+++....   ...+..+.+|+.||+.+++.+.|+.              .++.+ .+++.++
T Consensus        50 I~~~G~~~~~~y~I~~G~v~v~~~~~~~~~~~~~l~~g~~fg~~~l~~~~~~~--------------~s~~a-~~~~~~~  114 (136)
T d1cx4a1          50 VIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRA--------------ATITA-TSPGALW  114 (136)
T ss_dssp             EECTTSCCCEEEEEEECEEEEEEEETTEEEEEEEEESSCEECHHHHHHCCCCC--------------SEEEE-SSCEEEE
T ss_pred             EEECCCcchhhhhhhhheeEEeeccccceeeeeccCCccccchHHHhCCCcce--------------EEEEE-CCCEEEE
Confidence            7899999999999999999997643   3445688999999999999999887              67777 5667778


Q ss_pred             eecCCcccccc
Q psy11552        470 FRGPNRFQQIT  480 (714)
Q Consensus       470 ~l~r~~f~~~t  480 (714)
                      .+++..|....
T Consensus       115 ~i~~~~f~~ll  125 (136)
T d1cx4a1         115 GLDRVTFRRII  125 (136)
T ss_dssp             EEEHHHHHHHH
T ss_pred             EEeHHHHHHHH
Confidence            88887765543

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=9.6e-06  Score=76.96  Aligned_cols=75  Identities=21%  Similarity=0.352  Sum_probs=61.0

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      |+.+|+.++.+|+|.+|+|++..++ ..+..+++|++||+.+|+.+.++.              .++.+ .+++....++
T Consensus       102 I~~~g~~~~~ly~i~~G~v~v~~~~-~~~~~l~~G~~fGe~~~~~~~~~~--------------~~~~a-~~~~~l~~l~  165 (193)
T d1q3ea_         102 IIREGTIGKKMYFIQHGVVSVLTKG-NKEMKLSDGSYFGEICLLTRGRRT--------------ASVRA-DTYCRLYSLS  165 (193)
T ss_dssp             EECTTSBCCEEEEEEECCEEEEC-C-CCEEEECTTCEECHHHHHHCSBCS--------------SEEEE-SSCEEEEEEE
T ss_pred             ecccCCCCcceeEeeeeeEEeecCC-cceeeeccceeeeeeeccCCCccc--------------cccee-cCceEEEEEe
Confidence            7899999999999999999998776 345689999999999999998887              67777 5677778888


Q ss_pred             CCccccccchh
Q psy11552        473 PNRFQQITANL  483 (714)
Q Consensus       473 r~~f~~~tpnI  483 (714)
                      +.+|.......
T Consensus       166 ~~~f~~ll~~~  176 (193)
T d1q3ea_         166 VDNFNEVLEEY  176 (193)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHHC
Confidence            87776544433

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.70  E-value=8.7e-06  Score=73.59  Aligned_cols=75  Identities=25%  Similarity=0.427  Sum_probs=61.1

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----------ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccc
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----------KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDI  462 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----------~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei  462 (714)
                      |+++|+.++.+|+|++|.+++....          ...+..+++|++|||.+++.+.|+.              .++.+ 
T Consensus        36 i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~~fGe~~~~~~~~~~--------------~t~~a-  100 (147)
T d1cx4a2          36 IIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQYFGELALVTNKPRA--------------ASAHA-  100 (147)
T ss_dssp             EECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTCEESCHHHHHTCCCS--------------SEEEE-
T ss_pred             EEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCcEeeehhhcCCCCce--------------EEEEE-
Confidence            8899999999999999999998633          2346688999999999999999887              67777 


Q ss_pred             cCCceeeeecCCccccccch
Q psy11552        463 KGPRRYKFRGPNRFQQITAN  482 (714)
Q Consensus       463 ~~p~~~~~l~r~~f~~~tpn  482 (714)
                      .+++.++.++++.|......
T Consensus       101 ~~~~~~~~i~~~~f~~ll~~  120 (147)
T d1cx4a2         101 IGTVKCLAMDVQAFERLLGP  120 (147)
T ss_dssp             EEEEEEEEEEHHHHHHHCGG
T ss_pred             CCCEEEEEEEHHHHHHHHHH
Confidence            45677788888877665443

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.61  E-value=2.5e-05  Score=69.18  Aligned_cols=77  Identities=27%  Similarity=0.448  Sum_probs=61.1

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecc-----eeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGK-----GCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~-----~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |+++|++++.+|+|.+|.++++....     ..+..+++|+.||+.+++.+.|+.              .++.+ ..++.
T Consensus        36 I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~~~~~~~~~~--------------~t~~a-~~~~~  100 (132)
T d1ne6a2          36 IVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEIALLMNRPRA--------------ATVVA-RGPLK  100 (132)
T ss_dssp             EECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHHHHHHTSSCS--------------SEEEE-SSCEE
T ss_pred             EEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEeeecCCCcee--------------EEEEE-cccEE
Confidence            88999999999999999999987442     135688899999999999998877              56666 55677


Q ss_pred             eeeecCCccccccchhh
Q psy11552        468 YKFRGPNRFQQITANLD  484 (714)
Q Consensus       468 ~~~l~r~~f~~~tpnI~  484 (714)
                      ++.+++..+........
T Consensus       101 ~~~i~~~~~~~ll~~~p  117 (132)
T d1ne6a2         101 CVKLDRPRFERVLGPCS  117 (132)
T ss_dssp             EEEEEHHHHHHHTGGGH
T ss_pred             EEEEEHHHHHHHHHHCH
Confidence            78888877766554433

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=2.2e-05  Score=71.76  Aligned_cols=82  Identities=23%  Similarity=0.485  Sum_probs=62.6

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec------ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCc
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG------KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPR  466 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~------~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~  466 (714)
                      |+++|+.++.+|+|.+|.+++....      ...+..+++|+.||+ +++.+.|+.              .++.+ .+++
T Consensus        58 I~~~gd~~~~~y~I~~G~v~v~~~~~~~~~~~~~v~~l~~g~~fGe-~~l~~~~~~--------------~tv~a-~~~~  121 (155)
T d1o7fa2          58 LFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGIGTAFGE-SILDNTPRH--------------ATIVT-RESS  121 (155)
T ss_dssp             EECTTSBCCEEEEEEESCEEEEECSSSCGGGCEEEEEECTTCEECG-GGGGTCBCS--------------SEEEE-SSSE
T ss_pred             EEeCCCcceeeEEEeccchheeeecccccccccccccccccccchh-hhhcCCCce--------------EEEEE-CCCE
Confidence            7899999999999999999987532      345678999999998 899988887              66666 5677


Q ss_pred             eeeeecCCccccccchhhhhhhhhhhHHHhH
Q psy11552        467 RYKFRGPNRFQQITANLDVFLRRFNEIQYWV  497 (714)
Q Consensus       467 ~~~~l~r~~f~~~tpnI~~~i~~fn~ls~wV  497 (714)
                      .+..+++..|.       .+++.+..+..|+
T Consensus       122 ~l~~i~~~~f~-------~il~~~~~~~~~l  145 (155)
T d1o7fa2         122 ELLRIEQEDFK-------ALWEKYRQYMAGL  145 (155)
T ss_dssp             EEEEEEHHHHH-------HHHHHHGGGTTTT
T ss_pred             EEEEEeHHHHH-------HHHHHCHHHHHHH
Confidence            77778776554       4455555555544

>d1o7fa1 a.4.5.31 (A:180-321) Regulatory domain of epac2, domain 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Regulatory domain of epac2, domain 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=1.7e-05  Score=71.58  Aligned_cols=34  Identities=35%  Similarity=0.616  Sum_probs=30.7

Q ss_pred             hhHHHHHHHHHhhccccccc---------ceeeEeecCCCCch
Q psy11552         96 RQITTGMWQALLEEGVIYHG---------KISCFFFSETETIP  129 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv---------~~~y~f~~~~~~~~  129 (714)
                      |++|+.+||.|++.|+|+||         ..||||..|+....
T Consensus        58 R~eAv~lgq~Ll~~g~i~hV~~~~~F~D~~~lYrF~~d~~~~~  100 (142)
T d1o7fa1          58 RTQAVGMWQVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDA  100 (142)
T ss_dssp             HHHHHHHHHHHHHTTSEEESSCCSSCCSSSCEEEEGGGSSSSC
T ss_pred             HHHHHHHHHHHHHCCCeeecCCCcCEecCCEEEEEccCCCccC
Confidence            78999999999999999999         88999998877653

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=97.43  E-value=3.7e-05  Score=68.24  Aligned_cols=75  Identities=21%  Similarity=0.347  Sum_probs=60.4

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeecceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceeeeec
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYGKGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYKFRG  472 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~~l~  472 (714)
                      |+++|++++.+|+|.+|.+++...+.   ..+++|+.||+.+++.+.|..              .++.+ .+++.++.++
T Consensus        45 i~~~G~~~~~~y~I~~G~v~v~~~~~---~~l~~G~~~G~~~~l~~~~~~--------------~~~~a-~~~~~i~~i~  106 (133)
T d1vp6a_          45 ICRIGEPGDRMFFVVEGSVSVATPNP---VELGPGAFFGEMALISGEPRS--------------ATVSA-ATTVSLLSLH  106 (133)
T ss_dssp             EECTTSCCCEEEEEEESCEEECSSSC---EEECTTCEECHHHHHHCCCCS--------------SCEEE-SSSEEEEEEE
T ss_pred             EEeCCCCCccceeeeccccEEEEeee---eeeccCcccccccccCCCccc--------------ceEEE-CCCEEEEEEe
Confidence            88999999999999999999887553   358899999999999999887              67777 5677788888


Q ss_pred             CCccccccchhhh
Q psy11552        473 PNRFQQITANLDV  485 (714)
Q Consensus       473 r~~f~~~tpnI~~  485 (714)
                      ++.+.....+-..
T Consensus       107 ~~~~~~l~~~~p~  119 (133)
T d1vp6a_         107 SADFQMLCSSSPE  119 (133)
T ss_dssp             HHHHHHHHHHCHH
T ss_pred             HHHHHHHHHhCHH
Confidence            8777655444333

>d1fsha_ a.4.5.31 (A:) Segment polarity protein Dishevelled-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Segment polarity protein Dishevelled-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=3.2e-05  Score=64.57  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=24.6

Q ss_pred             hhHHHHHHHHHhhccccccc--------ceeeEee
Q psy11552         96 RQITTGMWQALLEEGVIYHG--------KISCFFF  122 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv--------~~~y~f~  122 (714)
                      |++|+.+||.|++.|+|+||        ..||||+
T Consensus        59 r~eAv~lgq~Ll~~g~i~hv~~~~~F~D~~~YrF~   93 (94)
T d1fsha_          59 RREARKYASSMLKHGFLRHTVNKITFSEQCYYVFG   93 (94)
T ss_dssp             HHHHHHHHHHHHHTTTEECSSSSCCCCSSSCCEEC
T ss_pred             HHHHHHHHHHHHHCCceEECCCCCccccCCeEEeC
Confidence            78999999999999999999        6678886

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.34  E-value=4.7e-05  Score=68.07  Aligned_cols=80  Identities=15%  Similarity=0.022  Sum_probs=53.1

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec-----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG-----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~-----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |+++|++++.+|+|.+|.++++...     ...+..+++|++|||++|+...++..     ..-.-.+.+|+.+ ..++.
T Consensus        40 I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~~ll~~~~~~~-----~~~~~~r~~tv~a-~t~~~  113 (137)
T d1wgpa_          40 LVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDELLTWALDPKS-----GSNLPSSTRTVKA-LTEVE  113 (137)
T ss_dssp             EECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTHHHHHHHCSSC-----CSSSCBCSSEEEE-SSCBE
T ss_pred             EEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcchhHhccCCCcc-----cccccccCcEEEE-eeeEE
Confidence            7899999999999999999987643     12345789999999999975411100     0000011156666 45666


Q ss_pred             eeeecCCcccc
Q psy11552        468 YKFRGPNRFQQ  478 (714)
Q Consensus       468 ~~~l~r~~f~~  478 (714)
                      ++++.++++..
T Consensus       114 l~~L~~~dl~~  124 (137)
T d1wgpa_         114 AFALIADELKF  124 (137)
T ss_dssp             EEEEEHHHHHH
T ss_pred             EEEEEHHHHHH
Confidence            77777766544

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.28  E-value=0.00014  Score=65.41  Aligned_cols=76  Identities=8%  Similarity=0.069  Sum_probs=57.8

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      |+.+|++++.+|+|++|.+++....    ...+..+++|+.||+.+++...++..             .++.+ .+++..
T Consensus        42 i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~fGe~~~~~~~~~~~-------------~~v~a-~~~~~v  107 (147)
T d1zyba2          42 IIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYA-------------SSYVA-HTEVHT  107 (147)
T ss_dssp             EECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEECGGGGSSSCCBCS-------------SEEEE-SSCEEE
T ss_pred             EEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCEeccchhhccccccc-------------ceeee-cceeee
Confidence            7899999999999999999988743    34567889999999999988876531             45555 456677


Q ss_pred             eeecCCccccccch
Q psy11552        469 KFRGPNRFQQITAN  482 (714)
Q Consensus       469 ~~l~r~~f~~~tpn  482 (714)
                      +.+++..+......
T Consensus       108 l~i~~~~~~~~~~~  121 (147)
T d1zyba2         108 VCISKAFVLSDLFR  121 (147)
T ss_dssp             EEEEHHHHHHTGGG
T ss_pred             eehhHHHHHHHHHH
Confidence            77777766554433

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.0001  Score=64.73  Aligned_cols=72  Identities=25%  Similarity=0.396  Sum_probs=56.4

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC-chhHHHHHHhhhheeeeeccccccCCce
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA-PSYQLHMYLEQMAVYFTTTAPDIKGPRR  467 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~-p~~~~~~~l~~~~ly~~itv~ei~~p~~  467 (714)
                      |+++|++.+.+|+|++|.+++....    ...+..+.+|+.||+.+++.+. |..              +++.+ .+++.
T Consensus        24 i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~--------------~~~~a-~~~~~   88 (132)
T d1i5za2          24 LIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS--------------AWVRA-KTACE   88 (132)
T ss_dssp             EECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCC--------------SEEEE-SSCEE
T ss_pred             EEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccce--------------EEEEE-ccceE
Confidence            7899999999999999999988743    2345678899999999998764 445              66666 56777


Q ss_pred             eeeecCCccccc
Q psy11552        468 YKFRGPNRFQQI  479 (714)
Q Consensus       468 ~~~l~r~~f~~~  479 (714)
                      ++.++++.+...
T Consensus        89 v~~i~~~~~~~~  100 (132)
T d1i5za2          89 VAEISYKKFRQL  100 (132)
T ss_dssp             EEEEEHHHHHHH
T ss_pred             EEEEcHHHHHHH
Confidence            777777766543

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=97.19  E-value=0.00011  Score=65.64  Aligned_cols=71  Identities=15%  Similarity=0.233  Sum_probs=56.2

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec---c-eeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG---K-GCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~---~-~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      ++.+|++.+.+|+|.+|.+++....   . ..+..+++|+.||+.+++.+.|+.              .++.+ .+++.+
T Consensus        35 l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~~--------------~~~~a-~~~s~v   99 (142)
T d2gaua2          35 VFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETCS--------------STAIA-VENSKV   99 (142)
T ss_dssp             EECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCCS--------------SEEEE-SSCEEE
T ss_pred             EEeCCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhhccCCce--------------eEEEe-cCCEEE
Confidence            7899999999999999999998733   2 334568899999999999998877              56666 567777


Q ss_pred             eeecCCcccc
Q psy11552        469 KFRGPNRFQQ  478 (714)
Q Consensus       469 ~~l~r~~f~~  478 (714)
                      +.++++.+.+
T Consensus       100 ~~i~~~~~~~  109 (142)
T d2gaua2         100 LAIPVEAIEA  109 (142)
T ss_dssp             EEEEHHHHHH
T ss_pred             EEEeHHHHHH
Confidence            7787765544

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.15  E-value=0.00015  Score=64.08  Aligned_cols=73  Identities=22%  Similarity=0.345  Sum_probs=54.3

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCC----chhHHHHHHhhhheeeeeccccccC
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNA----PSYQLHMYLEQMAVYFTTTAPDIKG  464 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~----p~~~~~~~l~~~~ly~~itv~ei~~  464 (714)
                      |+++|++.+.+|+|++|.+++....    ...+..+.+|+.||+.+++...    |+.              .++.+ .+
T Consensus        23 i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~--------------~~~~a-~~   87 (134)
T d2oz6a2          23 IIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERS--------------AWVRA-KV   87 (134)
T ss_dssp             EECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCC--------------SEEEE-SS
T ss_pred             EEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccce--------------eEEEE-CC
Confidence            7899999999999999999998743    2345578899999999998764    333              45555 55


Q ss_pred             CceeeeecCCcccccc
Q psy11552        465 PRRYKFRGPNRFQQIT  480 (714)
Q Consensus       465 p~~~~~l~r~~f~~~t  480 (714)
                      ++....++++.+....
T Consensus        88 ~~~vl~i~~~~~~~~~  103 (134)
T d2oz6a2          88 ECEVAEISYAKFRELS  103 (134)
T ss_dssp             CEEEEEEEHHHHHHHH
T ss_pred             CEEEEEEeHHHHHHHH
Confidence            6677777776665433

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.00017  Score=62.93  Aligned_cols=72  Identities=11%  Similarity=0.101  Sum_probs=55.9

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec----ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG----KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~----~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      ++++|++.+++|+|++|.+.+....    ...+..+++|+.||+.+++.+.|+..             +++.+ ..++.+
T Consensus        21 l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~-------------~~~~a-~~~~~v   86 (129)
T d1o5la1          21 VKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFP-------------VNVVA-GENSKI   86 (129)
T ss_dssp             EECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCS-------------SEEEE-SSSEEE
T ss_pred             EEECCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHhccCCCcc-------------EEEEe-ecccEE
Confidence            7899999999999999999987633    23456889999999999998876531             56666 556667


Q ss_pred             eeecCCcccc
Q psy11552        469 KFRGPNRFQQ  478 (714)
Q Consensus       469 ~~l~r~~f~~  478 (714)
                      +.+++..+..
T Consensus        87 l~i~~~~~~~   96 (129)
T d1o5la1          87 LSIPKEVFLD   96 (129)
T ss_dssp             EEEEHHHHHH
T ss_pred             EEEcHHHHHH
Confidence            7777766644

>d2csoa1 a.4.5.31 (A:8-122) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00053  Score=59.15  Aligned_cols=20  Identities=30%  Similarity=0.293  Sum_probs=19.1

Q ss_pred             hhHHHHHHHHHhhccccccc
Q psy11552         96 RQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv  115 (714)
                      |++|+.+||.|++.|+|+||
T Consensus        59 r~eAv~lgq~Ll~~g~I~~V   78 (115)
T d2csoa1          59 RQEGLMIASSLLNEGYLQPA   78 (115)
T ss_dssp             HHHHHHHHHHHHHHTSSEEE
T ss_pred             HHHHHHHHHHHHHCCCeEEC
Confidence            68999999999999999998

>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DEP domain
domain: Pleckstrin 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0015  Score=56.68  Aligned_cols=20  Identities=20%  Similarity=0.164  Sum_probs=19.2

Q ss_pred             hhHHHHHHHHHhhccccccc
Q psy11552         96 RQITTGMWQALLEEGVIYHG  115 (714)
Q Consensus        96 ~~~a~~~~~~l~~~g~~~hv  115 (714)
                      |++|+.|||.||+.|+|+||
T Consensus        56 R~eA~~lgq~Ll~~g~i~~V   75 (120)
T d1v3fa_          56 RLEAVTLASMLMEENFLRPV   75 (120)
T ss_dssp             HHHHHHHHHHHHHHTSEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEc
Confidence            68999999999999999999

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.28  E-value=0.0064  Score=53.02  Aligned_cols=67  Identities=15%  Similarity=0.237  Sum_probs=49.5

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec---ceeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCceee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG---KGCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRYK  469 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~---~~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~~  469 (714)
                      |+.+|+..+.+|+|++|.+++...+   ...+..+++|+.||+.+       .              .++++ .+++.++
T Consensus        33 i~~~g~~~~~ly~v~~G~v~~~~~~~g~e~~l~~~~~g~~f~~~~-------~--------------~~v~A-~~~s~v~   90 (132)
T d1ft9a2          33 VCTGEGDENGVFVVVDGRLRVYLVGEEREISLFYLTSGDMFCMHS-------G--------------CLVEA-TERTEVR   90 (132)
T ss_dssp             EECTTCCCCCEEEEEESEEEEEEEETTEEEEEEEEETTCEEESCS-------S--------------CEEEE-SSCEEEE
T ss_pred             EECCCCCCCEEEEEEeCeEeeeccccccceeeccccccccccccc-------c--------------cccee-ccceeee
Confidence            7899999999999999999987633   23455888999998743       2              45555 5667777


Q ss_pred             eecCCccccccc
Q psy11552        470 FRGPNRFQQITA  481 (714)
Q Consensus       470 ~l~r~~f~~~tp  481 (714)
                      .++++.+.....
T Consensus        91 ~i~~~~~~~ll~  102 (132)
T d1ft9a2          91 FADIRTFEQKLQ  102 (132)
T ss_dssp             EECHHHHHHHHH
T ss_pred             eehHHHHHHHHH
Confidence            888876654333

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=95.28  E-value=0.0066  Score=53.36  Aligned_cols=68  Identities=18%  Similarity=0.162  Sum_probs=48.4

Q ss_pred             ccccCCCCceEEEEEeCeEEEEeec---c-eeeeeecCCCccchhhhhcCCchhHHHHHHhhhheeeeeccccccCCcee
Q psy11552        393 VFHQGDEGKSWYIIIQGSVDVVIYG---K-GCVTSLYAGEDFGKLALVNNAPSYQLHMYLEQMAVYFTTTAPDIKGPRRY  468 (714)
Q Consensus       393 i~~~g~~~~~~YiI~~G~~~~~~~~---~-~~v~~l~~gd~fge~~~L~~~p~~~~~~~l~~~~ly~~itv~ei~~p~~~  468 (714)
                      ++++|++.+.+|+|++|.+++....   . ..+..+++||.||++...   ++.              .++.+ .+++..
T Consensus        35 i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~~~---~~~--------------~~~~a-~~~~~v   96 (139)
T d3e5ua2          35 VIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLYPT---GNN--------------IYATA-MEPTRT   96 (139)
T ss_dssp             EECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCSCC---SCE--------------EEEEE-SSCEEE
T ss_pred             EEeCCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhhhh---ccc--------------ccccc-cccceE
Confidence            7899999999999999999987733   2 345578899999996543   232              34444 455666


Q ss_pred             eeecCCcccc
Q psy11552        469 KFRGPNRFQQ  478 (714)
Q Consensus       469 ~~l~r~~f~~  478 (714)
                      ..++++.|..
T Consensus        97 ~~i~~~~f~~  106 (139)
T d3e5ua2          97 CWFSEKSLRT  106 (139)
T ss_dssp             EEECHHHHHH
T ss_pred             EEeeHHHHHH
Confidence            6777765543