Psyllid ID: psy11609

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFELEFR
Secondary Structure (PSIPRED)
cEEEEEEEEccccccHHHHHHHHcccEEEEEEEcccccEEEEEEEEcHHHHHHHHHHccccEEEccEEEEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccHHcccHHHEEccccEEEEEEEcccccEEEEEEEccHHHHHHHHHHccccEEEEEEEEEEcccccccccccc
Coil and Loop (DISEMBL)
MALFIYVVSdtslkdglyHEYKKHGKVSWVKIIGqggdryglvcfKKADDAEKAILGShekhffgckidvspyhdvdfelefr
Flexible Loop (DISEMBL)
MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFELEFR
Low Complexity Region (SEG)
MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFELEFR
Disordered region (IsUnstruct)
**LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFE****
Disordered Region (DISOPRED)
*ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKK*************KHFFGCKIDVS************
Disordered Region (DISEMBL)
MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFELEFR
Disordered Region (DISPRO)
MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFELEFR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	83	2.2.26 [Sep-21-2011]
Q8SX83	5560	Protein split ends OS=Dro	yes	N/A	0.903	0.013	0.710	4e-28
Q96T58	3664	Msx2-interacting protein	yes	N/A	0.903	0.020	0.506	1e-14
Q62504	3644	Msx2-interacting protein	yes	N/A	0.891	0.020	0.513	2e-14

>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2

 Score =  123 bits (308), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 566 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 625

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 626 EVEPYQGYDVEDNEFR 641

Probable corepressor protein, which regulates different key pathways such as the EGF receptor and Wg pathways. Involved in neuronal cell fate, survival and axon guidance, cell cycle regulation and repression of head identity in the embryonic trunk. May act with the Hox gene Deformed and the EGF receptor signaling pathway. Positive regulator of the Wg pathway in larval tissues but not in embryonic tissues. May act as a transcriptional corepressor protein, which repress transcription via the recruitment of large complexes containing histone deacetylase proteins.
Drosophila melanogaster (taxid: 7227)

>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 55/77 (71%), Gaps = 2/77 (2%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           +DTSLKDGL+HE+KK GKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I
Sbjct: 347 TDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQI 406

Query: 69  DVSPY--HDVDFELEFR 83
           +V+ +   + + E EFR
Sbjct: 407 EVTAWIGPETESENEFR 423

May serve as a nuclear matrix platform that organizes and integrates transcriptional responses. In osteoblasts, supports transcription activation: synergizes with RUNX2 to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element (OCFRE) (By similarity). Has also been shown to be an essential corepressor protein, which probably regulates different key pathways such as the Notch pathway. Negative regulator of the Notch pathway via its interaction with RBPSUH, which prevents the association between NOTCH1 and RBPSUH, and therefore suppresses the transactivation activity of Notch signaling. Blocks the differentiation of precursor B-cells into marginal zone B-cells. Probably represses transcription via the recruitment of large complexes containing histone deacetylase proteins. May bind both to DNA and RNA.

Homo sapiens (taxid: 9606)

>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 10  DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69
           DTSLKDGL+HE+KK GKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I+
Sbjct: 349 DTSLKDGLFHEFKKFGKVTSVQIHGASEERYGLVFFRQQEDQEKALTASKGKLFFGMQIE 408

Query: 70  VSPY--HDVDFELEFR 83
           V+ +   + + E EFR
Sbjct: 409 VTAWVGPETESENEFR 424

May serve as a nuclear matrix platform that organizes and integrates transcriptional responses. In osteoblasts, supports transcription activation: synergizes with RUNX2 to enhance FGFR2-mediated activation of the osteocalcin FGF-responsive element (OCFRE). Has also been shown to be an essential corepressor protein, which probably regulates different key pathways, such as the Notch pathway. Negative regulator of the Notch pathway via its interaction with RBPSUH, which prevents the association between NOTCH1 and RBPSUH, and therefore suppresses the transactivation activity of Notch signaling. Blocks the differentiation of precursor B-cells into marginal zone B-cells. Probably represses transcription via the recruitment of large complexes containing histone deacetylase proteins. May bind both to DNA and RNA.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
442624895	5510	split ends, isoform F [Drosophila melano	0.903	0.013	0.710	2e-26
442624890	5458	split ends, isoform H [Drosophila melano	0.903	0.013	0.710	2e-26
442624888	5487	split ends, isoform G [Drosophila melano	0.903	0.013	0.710	2e-26
6979936	5554	split ends long isoform [Drosophila mela	0.903	0.013	0.710	2e-26
6467825	5533	Spen RNP motif protein long isoform [Dro	0.903	0.013	0.710	2e-26
20151563	1521	LD15253p [Drosophila melanogaster]	0.903	0.049	0.710	2e-26
24580583	5476	split ends, isoform C [Drosophila melano	0.903	0.013	0.710	2e-26
24580581	5533	split ends, isoform B [Drosophila melano	0.903	0.013	0.710	2e-26
24580579	5560	split ends, isoform A [Drosophila melano	0.903	0.013	0.710	2e-26
386768866	5505	split ends, isoform D [Drosophila melano	0.903	0.013	0.710	2e-26

>gi|442624895|ref|NP_001259805.1| split ends, isoform F [Drosophila melanogaster] gi|440213051|gb|AGB92342.1| split ends, isoform F [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 516 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 575

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 576 EVEPYQGYDVEDNEFR 591

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442624890|ref|NP_001259803.1| split ends, isoform H [Drosophila melanogaster] gi|440213049|gb|AGB92340.1| split ends, isoform H [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 509 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 568

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 569 EVEPYQGYDVEDNEFR 584

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442624888|ref|NP_001259802.1| split ends, isoform G [Drosophila melanogaster] gi|440213048|gb|AGB92339.1| split ends, isoform G [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 511 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 570

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 571 EVEPYQGYDVEDNEFR 586

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|6979936|gb|AAF34661.1|AF221715_1 split ends long isoform [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 560 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 619

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 620 EVEPYQGYDVEDNEFR 635

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|6467825|gb|AAF13218.1|AF188205_1 Spen RNP motif protein long isoform [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 566 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 625

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 626 EVEPYQGYDVEDNEFR 641

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20151563|gb|AAM11141.1| LD15253p [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 82  SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 141

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 142 EVEPYQGYDVEDNEFR 157

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24580583|ref|NP_722616.1| split ends, isoform C [Drosophila melanogaster] gi|6715140|gb|AAF26299.1|AF184612_1 split ends [Drosophila melanogaster] gi|22945598|gb|AAN10511.1| split ends, isoform C [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 509 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 568

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 569 EVEPYQGYDVEDNEFR 584

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24580581|ref|NP_524718.2| split ends, isoform B [Drosophila melanogaster] gi|10727420|gb|AAF51534.2| split ends, isoform B [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 566 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 625

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 626 EVEPYQGYDVEDNEFR 641

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24580579|ref|NP_722615.1| split ends, isoform A [Drosophila melanogaster] gi|46397733|sp|Q8SX83.2|SPEN_DROME RecName: Full=Protein split ends gi|10727421|gb|AAF51535.2| split ends, isoform A [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 566 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 625

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 626 EVEPYQGYDVEDNEFR 641

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386768866|ref|NP_001245816.1| split ends, isoform D [Drosophila melanogaster] gi|442624893|ref|NP_001259804.1| split ends, isoform E [Drosophila melanogaster] gi|383291252|gb|AFH03493.1| split ends, isoform D [Drosophila melanogaster] gi|440213050|gb|AGB92341.1| split ends, isoform E [Drosophila melanogaster]

 Score =  123 bits (308), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 9   SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct: 511 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 570

Query: 69  DVSPYHDVDFE-LEFR 83
           +V PY   D E  EFR
Sbjct: 571 EVEPYQGYDVEDNEFR 586

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
FB|FBgn0016977	5560	spen "split ends" [Drosophila	0.903	0.013	0.710	1.4e-24
ZFIN|ZDB-GENE-050309-70	3476	spen "spen homolog, transcript	0.903	0.021	0.545	5e-15
UNIPROTKB|H0Y5U7	297	SPEN "Msx2-interacting protein	0.903	0.252	0.506	1.5e-14
UNIPROTKB|F1MB97	636	SPEN "Uncharacterized protein"	0.891	0.116	0.513	1.7e-13
UNIPROTKB|F6WRY4	373	SPEN "Msx2-interacting protein	0.783	0.174	0.538	2.4e-13
UNIPROTKB|E1BV40	3586	Gga.17720 "Uncharacterized pro	0.903	0.020	0.506	8.8e-13
UNIPROTKB|E1C4T6	3607	Gga.17720 "Uncharacterized pro	0.903	0.020	0.506	8.9e-13
UNIPROTKB|F1Q262	3297	SPEN "Uncharacterized protein"	0.903	0.022	0.506	1e-12
RGD|2318836	3534	LOC100365546 "rCG30673-like" [	0.903	0.021	0.506	1.1e-12
UNIPROTKB|F1LU10	3618	LOC100365546 "Protein LOC10036	0.903	0.020	0.506	1.1e-12

FB|FBgn0016977 spen "split ends" [Drosophila melanogaster (taxid:7227)]

 Score = 301 (111.0 bits), Expect = 1.4e-24, P = 1.4e-24
 Identities = 54/76 (71%), Positives = 62/76 (81%)

Query:     9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
             SDTSLKDGL+HEYKKHGKV+WVK++GQ  +RY LVCFKK DD EKA+  SH+KHFFGCKI
Sbjct:   566 SDTSLKDGLFHEYKKHGKVTWVKVVGQNSERYALVCFKKPDDVEKALEVSHDKHFFGCKI 625

Query:    69 DVSPYHDVDFE-LEFR 83
             +V PY   D E  EFR
Sbjct:   626 EVEPYQGYDVEDNEFR 641

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007379 "segment specification" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007411 "axon guidance" evidence=IMP

GO:0007400 "neuroblast fate determination" evidence=IMP

GO:0008347 "glial cell migration" evidence=IMP

GO:0007403 "glial cell fate determination" evidence=IMP

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0016055 "Wnt receptor signaling pathway" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0035321 "maintenance of imaginal disc-derived wing hair orientation" evidence=IMP

GO:0048106 "establishment of thoracic bristle planar orientation" evidence=IMP

GO:0035222 "wing disc pattern formation" evidence=IMP

GO:0030177 "positive regulation of Wnt receptor signaling pathway" evidence=IGI

GO:0048749 "compound eye development" evidence=IMP

ZFIN|ZDB-GENE-050309-70 spen "spen homolog, transcriptional regulator (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 209 (78.6 bits), Expect = 5.0e-15, P = 5.0e-15
 Identities = 42/77 (54%), Positives = 57/77 (74%)

Query:     9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
             +DTSLKDGL+HE+KKHGKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I
Sbjct:   395 TDTSLKDGLFHEFKKHGKVTSVQIHGASEERYGLVFFRQQEDQEKALSASKGKLFFGMQI 454

Query:    69 DVSPYH--DVDFELEFR 83
             DV+ +H  + + E EFR
Sbjct:   455 DVTAWHGPETESENEFR 471

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|H0Y5U7 SPEN "Msx2-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 39/77 (50%), Positives = 55/77 (71%)

Query:     9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
             +DTSLKDGL+HE+KK GKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I
Sbjct:    87 TDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQI 146

Query:    69 DVSPY--HDVDFELEFR 83
             +V+ +   + + E EFR
Sbjct:   147 EVTAWIGPETESENEFR 163

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MB97 SPEN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 39/76 (51%), Positives = 54/76 (71%)

Query:    10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID 69
             DTSLKDGL+HE+KK GKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I+
Sbjct:   434 DTSLKDGLFHEFKKFGKVTSVQIHGASEERYGLVFFRQQEDQEKALTASKGKLFFGMQIE 493

Query:    70 VSPY--HDVDFELEFR 83
             V+ +   + + E EFR
Sbjct:   494 VTAWIGPETESENEFR 509

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F6WRY4 SPEN "Msx2-interacting protein" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 35/65 (53%), Positives = 49/65 (75%)

Query:     9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
             +DTSLKDGL+HE+KK GKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I
Sbjct:   306 TDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQI 365

Query:    69 DVSPY 73
             +V+ +
Sbjct:   366 EVTAW 370

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1BV40 Gga.17720 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 188 (71.2 bits), Expect = 8.8e-13, P = 8.8e-13
 Identities = 39/77 (50%), Positives = 56/77 (72%)

Query:     9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
             +DTSLKDGL+HE+KK+GKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I
Sbjct:   347 TDTSLKDGLFHEFKKYGKVTSVQIHGASEERYGLVFFRQQEDQEKALNASKGKLFFGMQI 406

Query:    69 DVSPY--HDVDFELEFR 83
             +V+ +   + + E EFR
Sbjct:   407 EVTAWIGPETESENEFR 423

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E1C4T6 Gga.17720 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 188 (71.2 bits), Expect = 8.9e-13, P = 8.9e-13
 Identities = 39/77 (50%), Positives = 56/77 (72%)

Query:     9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
             +DTSLKDGL+HE+KK+GKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I
Sbjct:   346 TDTSLKDGLFHEFKKYGKVTSVQIHGASEERYGLVFFRQQEDQEKALNASKGKLFFGMQI 405

Query:    69 DVSPY--HDVDFELEFR 83
             +V+ +   + + E EFR
Sbjct:   406 EVTAWIGPETESENEFR 422

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IEA

GO:0001191 "RNA polymerase II transcription factor binding transcription factor activity involved in negative regulation of transcription" evidence=IEA

GO:0003697 "single-stranded DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0050769 "positive regulation of neurogenesis" evidence=IEA

UNIPROTKB|F1Q262 SPEN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 187 (70.9 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 39/77 (50%), Positives = 55/77 (71%)

Query:     9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
             +DTSLKDGL+HE+KK GKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I
Sbjct:   404 TDTSLKDGLFHEFKKFGKVTSVQIHGTSEERYGLVFFRQQEDQEKALTASKGKLFFGMQI 463

Query:    69 DVSPY--HDVDFELEFR 83
             +V+ +   + + E EFR
Sbjct:   464 EVTAWIGPETESENEFR 480

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|2318836 LOC100365546 "rCG30673-like" [Rattus norvegicus (taxid:10116)]

 Score = 187 (70.9 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 39/77 (50%), Positives = 55/77 (71%)

Query:     9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
             +DTSLKDGL+HE+KK GKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I
Sbjct:   347 TDTSLKDGLFHEFKKFGKVTSVQIHGASEERYGLVFFRQQEDQEKALTASKGKLFFGMQI 406

Query:    69 DVSPY--HDVDFELEFR 83
             +V+ +   + + E EFR
Sbjct:   407 EVTAWVGPETESENEFR 423

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1LU10 LOC100365546 "Protein LOC100365546" [Rattus norvegicus (taxid:10116)]

 Score = 187 (70.9 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 39/77 (50%), Positives = 55/77 (71%)

Query:     9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
             +DTSLKDGL+HE+KK GKV+ V+I G   +RYGLV F++ +D EKA+  S  K FFG +I
Sbjct:   349 TDTSLKDGLFHEFKKFGKVTSVQIHGASEERYGLVFFRQQEDQEKALTASKGKLFFGMQI 408

Query:    69 DVSPY--HDVDFELEFR 83
             +V+ +   + + E EFR
Sbjct:   409 EVTAWVGPETESENEFR 425

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q62504	MINT_MOUSE	No assigned EC number	0.5131	0.8915	0.0203	yes	N/A
Q8SX83	SPEN_DROME	No assigned EC number	0.7105	0.9036	0.0134	yes	N/A
Q96T58	MINT_HUMAN	No assigned EC number	0.5064	0.9036	0.0204	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	83
cd12349	74	cd12349, RRM2_SHARP, RNA recognition motif 2 in SM	5e-33
cd12308	79	cd12308, RRM1_Spen, RNA recognition motif 1 in the	1e-07
cd12553	78	cd12553, RRM1_RBM15, RNA recognition motif 1 in ve	2e-07
cd00590	72	cd00590, RRM_SF, RNA recognition motif (RRM) super	2e-06
smart00360	73	smart00360, RRM, RNA recognition motif	3e-05
pfam13893	56	pfam13893, RRM_5, RNA recognition motif	4e-04
cd12453	86	cd12453, RRM1_RIM4_like, RNA recognition motif 1 i	0.002
cd12251	72	cd12251, RRM3_hnRNPR_like, RNA recognition motif 3	0.003

>gnl|CDD|240795 cd12349, RRM2_SHARP, RNA recognition motif 2 in SMART/HDAC1-associated repressor protein (SHARP) and similar proteins

 Score =  108 bits (271), Expect = 5e-33
 Identities = 38/63 (60%), Positives = 50/63 (79%)

Query: 9  SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
          SDTSLKDGL+HE+KKHGKV+ VK+ G G +RY +V F+K +DAEKA+  S  K FFG +I
Sbjct: 12 SDTSLKDGLFHEFKKHGKVTSVKVHGTGSERYAIVFFRKPEDAEKALEVSKGKLFFGAEI 71

Query: 69 DVS 71
          +V+
Sbjct: 72 EVT 74

This subfamily corresponds to the RRM2 of SHARP, also termed Msx2-interacting protein (MINT), or SPEN homolog, an estrogen-inducible transcriptional repressor that interacts directly with the nuclear receptor corepressor SMRT, histone deacetylases (HDACs) and components of the NuRD complex. SHARP recruits HDAC activity and binds to the steroid receptor RNA coactivator SRA through four conserved N-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), further suppressing SRA-potentiated steroid receptor transcription activity. Thus, SHARP has the capacity to modulate both liganded and nonliganded nuclear receptors. SHARP also has been identified as a component of transcriptional repression complexes in Notch/RBP-Jkappa signaling pathways. In addition to the N-terminal RRMs, SHARP possesses a C-terminal SPOC domain (Spen paralog and ortholog C-terminal domain), which is highly conserved among Spen proteins. . Length = 74

>gnl|CDD|240754 cd12308, RRM1_Spen, RNA recognition motif 1 in the Spen (split end) protein family

 Score = 44.2 bits (105), Expect = 1e-07
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 8  VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGD-RYGLVCFKKADDAEKA 54
          +SD  ++D LYHE+KK G VS V+++  G D R   V F+  +DA +A
Sbjct: 13 LSDEDIEDVLYHEFKKFGDVS-VRVLHDGEDERVAYVNFRHPEDAREA 59

This subfamily corresponds to the RRM1 domain in the Spen (split end) family which includes RNA binding motif protein 15 (RBM15), putative RNA binding motif protein 15B (RBM15B), and similar proteins found in Metazoa. RBM15, also termed one-twenty two protein 1 (OTT1), conserved in eukaryotes, is a novel mRNA export factor and component of the NXF1 pathway. It binds to NXF1 and serves as receptor for the RNA export element RTE. It also possesses mRNA export activity and can facilitate the access of DEAD-box protein DBP5 to mRNA at the nuclear pore complex (NPC). RNA-binding protein 15B (RBM15B), also known as one twenty-two 3 (OTT3), is a paralog of RBM15 and therefore has post-transcriptional regulatory activity. It is a nuclear protein sharing with RBM15 the association with the splicing factor compartment and the nuclear envelope as well as the binding to mRNA export factors NXF1 and Aly/REF. Members in this family belong- to the Spen (split end) protein family, which share a domain architecture comprising of three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. . Length = 79

>gnl|CDD|240997 cd12553, RRM1_RBM15, RNA recognition motif 1 in vertebrate RNA binding motif protein 15 (RBM15)

 Score = 43.4 bits (102), Expect = 2e-07
 Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 8  VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKA 54
          +SD +++DGL+HE+KK G VS VKI   G +R   V F++ +DA  A
Sbjct: 13 LSDEAVEDGLFHEFKKFGDVS-VKISRLGDERVAFVNFRRPEDARAA 58

This subgroup corresponds to the RRM1 of RBM15, also termed one-twenty two protein 1 (OTT1), conserved in eukaryotes, a novel mRNA export factor and component of the NXF1 pathway. It binds to NXF1 and serves as receptor for the RNA export element RTE. It also possesses mRNA export activity and can facilitate the access of DEAD-box protein DBP5 to mRNA at the nuclear pore complex (NPC). RBM15 belongs to the Spen (split end) protein family, which contains three N-terminal RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), and a C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. This family also includes a RBM15-MKL1 (OTT-MAL) fusion protein that RBM15 is N-terminally fused to megakaryoblastic leukemia 1 protein (MKL1) at the C-terminus in a translocation involving chromosome 1 and 22, resulting in acute megakaryoblastic leukemia. The fusion protein could interact with the mRNA export machinery. Although it maintains the specific transactivator function of MKL1, the fusion protein cannot activate RTE-mediated mRNA expression and has lost the post-transcriptional activator function of RBM15. However, it has transdominant suppressor function contributing to its oncogenic properties. Length = 78

>gnl|CDD|240668 cd00590, RRM_SF, RNA recognition motif (RRM) superfamily

 Score = 40.8 bits (96), Expect = 2e-06
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKII---GQGGDRYGLVCFKKADDAEKAILGSH 59
          LF+  +   + ++ L   + K G++  V+I+         +  V F+  +DAEKA+   +
Sbjct: 1  LFVGNLPPDTTEEDLRELFSKFGEIESVRIVRDKDGKSKGFAFVEFESPEDAEKALEALN 60

Query: 60 EKHFFGCKIDVS 71
           K   G K+ VS
Sbjct: 61 GKELDGRKLKVS 72

RRM, also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs). Length = 72

>gnl|CDD|214636 smart00360, RRM, RNA recognition motif

 Score = 38.0 bits (89), Expect = 3e-05
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKII----GQGGDRYGLVCFKKADDAEKAILGS 58
          LF+  +   + ++ L   + K GKV  V+++          +  V F+  +DAEKA+   
Sbjct: 2  LFVGNLPPDTTEEELRELFSKFGKVESVRLVRDKETGKSKGFAFVEFESEEDAEKALEAL 61

Query: 59 HEKHFFGCKIDV 70
          + K   G  + V
Sbjct: 62 NGKELDGRPLKV 73

Length = 73

>gnl|CDD|206064 pfam13893, RRM_5, RNA recognition motif

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY 73
          LY  +   G V  +K++ +    +  V F   + AEKA+   +   F G  + V   
Sbjct: 1  LYKLFSPFGNVEKIKLL-KKKPGFAFVEFSTEEAAEKAVQYLNGVLFGGRPLRVDYS 56

(a.k.a. RRM, RBD, or RNP domain). The RRM motif is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. Length = 56

>gnl|CDD|240899 cd12453, RRM1_RIM4_like, RNA recognition motif 1 in yeast meiotic activator RIM4 and similar proteins

 Score = 33.5 bits (77), Expect = 0.002
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 9  SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-YGLVCFKKADDAEKAILGSHEKHFFGCK 67
          SD  L+  +   + K+G + +VK++     R Y  V F   DDA+ A+         G  
Sbjct: 15 SDDELEAAVTEHFSKYGTLVFVKVLRDWRQRPYAFVQFTNDDDAKNALAKGQGTILDGRH 74

Query: 68 IDVSP 72
          I    
Sbjct: 75 IRCER 79

This subfamily corresponds to the RRM1 of RIM4, also termed regulator of IME2 protein 4, a putative RNA binding protein that is expressed at elevated levels early in meiosis. It functions as a meiotic activator required for both the IME1- and IME2-dependent pathways of meiotic gene expression, as well as early events of meiosis, such as meiotic division and recombination, in Saccharomyces cerevisiae. RIM4 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The family also includes a putative RNA-binding protein termed multicopy suppressor of sporulation protein Msa1. It is a putative RNA-binding protein encoded by a novel gene, msa1, from the fission yeast Schizosaccharomyces pombe. Msa1 may be involved in the inhibition of sexual differentiation by controlling the expression of Ste11-regulated genes, possibly through the pheromone-signaling pathway. Like RIM4, Msa1 also contains two RRMs, both of which are essential for the function of Msa1. . Length = 86

>gnl|CDD|240697 cd12251, RRM3_hnRNPR_like, RNA recognition motif 3 in heterogeneous nuclear ribonucleoprotein R (hnRNP R) and similar proteins

 Score = 33.0 bits (76), Expect = 0.003
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 1  MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE 60
            L++  +  ++ ++ L   + ++G+V  VK I      Y  V F++ DDA KA+   + 
Sbjct: 2  KVLYVRNLPLSTTEEQLRELFSEYGEVERVKKIKD----YAFVHFEERDDAVKAMEEMNG 57

Query: 61 KHFFGCKIDVS 71
          K   G  I+VS
Sbjct: 58 KELEGSPIEVS 68

This subfamily corresponds to the RRM3 in hnRNP R, hnRNP Q, and APOBEC-1 complementation factor (ACF). hnRNP R is a ubiquitously expressed nuclear RNA-binding protein that specifically bind mRNAs with a preference for poly(U) stretches and has been implicated in mRNA processing and mRNA transport, and also acts as a regulator to modify binding to ribosomes and RNA translation. hnRNP Q is also a ubiquitously expressed nuclear RNA-binding protein. It has been identified as a component of the spliceosome complex, as well as a component of the apobec-1 editosome, and has been implicated in the regulation of specific mRNA transport. ACF is an RNA-binding subunit of a core complex that interacts with apoB mRNA to facilitate C to U RNA editing. It may also act as an apoB mRNA recognition factor and chaperone and play a key role in cell growth and differentiation. This family also includes two functionally unknown RNA-binding proteins, RBM46 and RBM47. All members contain three conserved RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.81
KOG0107|consensus	195		99.8
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	99.79
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	99.77
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	99.75
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.73
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.71
PLN03120	260	nucleic acid binding protein; Provisional	99.69
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.69
KOG0113|consensus	335		99.67
smart00362	72	RRM_2 RNA recognition motif.	99.66
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	99.66
COG0724	306	RNA-binding proteins (RRM domain) [General functio	99.66
KOG0148|consensus	321		99.66
PLN03121	243	nucleic acid binding protein; Provisional	99.66
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.65
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	99.65
smart00361	70	RRM_1 RNA recognition motif.	99.64
KOG4207|consensus	256		99.64
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.62
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.62
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.61
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.6
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	99.6
PLN03213	759	repressor of silencing 3; Provisional	99.59
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.57
smart00360	71	RRM RNA recognition motif.	99.56
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	99.56
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	99.56
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.55
KOG0125|consensus	376		99.54
KOG0123|consensus	369		99.51
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.5
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	99.48
KOG0111|consensus	298		99.48
KOG0149|consensus	247		99.48
KOG0123|consensus	369		99.47
KOG1548|consensus	382		99.43
KOG0117|consensus	506		99.39
KOG0114|consensus	124		99.39
KOG0121|consensus	153		99.39
KOG0122|consensus	270		99.38
KOG0105|consensus	241		99.37
KOG0131|consensus	203		99.35
KOG0117|consensus	506		99.32
KOG0108|consensus	435		99.32
KOG0415|consensus	479		99.27
KOG0148|consensus	321		99.26
KOG0145|consensus	360		99.26
KOG0127|consensus	678		99.26
KOG0127|consensus	678		99.26
KOG0109|consensus	346		99.24
KOG0144|consensus	510		99.2
KOG0110|consensus	725		99.2
KOG0124|consensus	544		99.2
KOG0145|consensus	360		99.19
KOG0126|consensus	219		99.17
KOG0130|consensus	170		99.16
KOG0147|consensus	549		99.14
KOG0131|consensus	203		99.13
KOG4206|consensus	221		99.11
KOG0109|consensus	346		99.07
KOG0153|consensus	377		98.98
KOG0226|consensus	290		98.96
KOG0132|consensus	894		98.92
KOG0144|consensus	510		98.89
KOG0106|consensus	216		98.88
KOG4661|consensus	940		98.85
KOG4205|consensus	311		98.85
KOG0146|consensus	371		98.76
KOG0533|consensus	243		98.67
KOG4209|consensus	231		98.61
KOG0116|consensus	419		98.6
KOG4205|consensus	311		98.59
KOG4208|consensus	214		98.51
KOG1996|consensus	378		98.5
KOG0151|consensus	877		98.48
KOG0147|consensus	549		98.47
KOG2202|consensus	260		98.47
KOG1190|consensus	492		98.43
KOG4212|consensus	608		98.39
KOG0146|consensus	371		98.38
KOG0120|consensus	500		98.38
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	98.3
KOG4212|consensus	608		98.28
KOG0106|consensus	216		98.26
KOG1457|consensus	284		98.25
KOG4454|consensus	267		98.24
KOG0124|consensus	544		98.22
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	98.21
KOG0110|consensus	725		98.18
KOG1457|consensus	284		98.12
KOG4660|consensus	549		97.97
KOG4210|consensus	285		97.93
KOG0112|consensus	975		97.92
KOG1548|consensus	382		97.84
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	97.7
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	97.6
KOG2314|consensus	698		97.53
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	97.37
KOG1995|consensus	351		97.3
COG5175	480	MOT2 Transcriptional repressor [Transcription]	97.12
PF04059	97	RRM_2: RNA recognition motif 2; InterPro: IPR00720	97.07
KOG1456|consensus	494		97.06
KOG1456|consensus	494		97.03
KOG0120|consensus	500		96.99
KOG0115|consensus	275		96.91
KOG0112|consensus	975		96.88
PF11767	66	SET_assoc: Histone lysine methyltransferase SET as	96.79
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	96.73
KOG4211|consensus	510		96.5
KOG2068|consensus	327		96.36
PF08675	87	RNA_bind: RNA binding domain; InterPro: IPR014789	96.14
KOG1190|consensus	492		95.69
KOG0128|consensus	881		95.55
KOG0128|consensus	881		94.96
PF03880	74	DbpA: DbpA RNA binding domain ; InterPro: IPR00558	94.94
KOG4676|consensus	479		94.49
KOG4285|consensus	350		94.24
KOG1855|consensus	484		94.04
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	93.44
KOG2135|consensus	526		93.37
KOG4206|consensus	221		93.01
KOG4307|consensus	944		92.69
KOG2193|consensus	584		92.35
PF07576	110	BRAP2: BRCA1-associated protein 2; InterPro: IPR01	92.31
KOG4210|consensus	285		92.15
KOG4211|consensus	510		91.86
KOG0129|consensus	520		91.01
PF02714	325	DUF221: Domain of unknown function DUF221; InterPr	90.63
KOG4307|consensus	944		89.17
KOG0129|consensus	520		88.15
KOG4574|consensus	1007		87.86
KOG0105|consensus	241		87.74
PF10309	62	DUF2414: Protein of unknown function (DUF2414); In	86.13
KOG4660|consensus	549		83.99
KOG2253|consensus	668		80.21

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.81  E-value=1.7e-19  Score=133.15  Aligned_cols=74  Identities=27%  Similarity=0.340  Sum_probs=70.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.++.+++|++.|++||+|.+|+|++|.    ++|||||.|.++|+|.+|+.+|||..|.||+|+|.....
T Consensus       271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~  348 (352)
T TIGR01661       271 CIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN  348 (352)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence            59999999999999999999999999999999987    699999999999999999999999999999999998764

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>KOG0107|consensus

Probab=99.80  E-value=1.4e-19  Score=129.68  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=73.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCcc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFE   79 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e   79 (83)
                      -|||++|.++..+++|+.+|.+||+|.+|||.. .+.|||||+|++|.||++|+..++|+.|+|.+|.|++..|...+
T Consensus        12 kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~   88 (195)
T KOG0107|consen   12 KVYVGNLGSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRG   88 (195)
T ss_pred             eEEeccCCCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCccc
Confidence            389999999999999999999999999999988 78999999999999999999999999999999999999876553

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=99.79  E-value=8.1e-19  Score=119.84  Aligned_cols=75  Identities=28%  Similarity=0.326  Sum_probs=71.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||+|.++|+|++|+..|||..|.|++|+|+.+...
T Consensus        36 ~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~  114 (144)
T PLN03134         36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR  114 (144)
T ss_pred             EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence            69999999999999999999999999999999875    6999999999999999999999999999999999998743

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=99.77  E-value=2.4e-18  Score=127.09  Aligned_cols=74  Identities=20%  Similarity=0.300  Sum_probs=70.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||.|.++|||++|+..|||+.|.|++|.|..+..
T Consensus         5 ~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~   82 (352)
T TIGR01661         5 NLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARP   82 (352)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecc
Confidence            79999999999999999999999999999999875    689999999999999999999999999999999998864

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PF00076 RRM_1: RNA recognition motif

Probab=99.75  E-value=8.4e-18  Score=97.73  Aligned_cols=67  Identities=25%  Similarity=0.418  Sum_probs=64.0

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      |||++++.+..+++|++.|++||+|.+++++.+.   ++|+|||.|.++++|++|++.+||..+.|++|+
T Consensus         1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir   70 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR   70 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence            7999999999999999999999999999999963   599999999999999999999999999999985

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.73  E-value=9.6e-18  Score=132.07  Aligned_cols=76  Identities=20%  Similarity=0.410  Sum_probs=72.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||+++.++..+++|++.|++||+|++|+|+.|.   ++|||||+|.++|+|.+|+.+|||++|.|++|+|..|+.++
T Consensus       287 ~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~  365 (562)
T TIGR01628       287 NLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE  365 (562)
T ss_pred             EEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence            69999999999999999999999999999999985   68999999999999999999999999999999999999754

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>PF13893 RRM_5: RNA recognition motif

Probab=99.71  E-value=5.9e-17  Score=93.33  Aligned_cols=56  Identities=32%  Similarity=0.481  Sum_probs=51.7

Q ss_pred             HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609         17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus        17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      |+++|++||+|.++.+.... .++|||+|.++++|++|++.+||..+.|++|+|+.|
T Consensus         1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a   56 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA   56 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence            78999999999999998865 699999999999999999999999999999999875

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PLN03120 nucleic acid binding protein; Provisional

Probab=99.69  E-value=1.2e-16  Score=119.40  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=69.9

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      .||||++++.++.+++|++.|+.||+|.+|.|+.+. ++|||||+|+++++|+.|+ .+||..|.|++|.|++++
T Consensus         5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~   78 (260)
T PLN03120          5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAE   78 (260)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEecc
Confidence            389999999999999999999999999999999987 6899999999999999999 599999999999999997

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.69  E-value=6.7e-17  Score=123.67  Aligned_cols=73  Identities=18%  Similarity=0.248  Sum_probs=69.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||+|.++|+|++|++.|||..+.|++|.|..+.
T Consensus       109 ~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~  185 (346)
T TIGR01659       109 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYAR  185 (346)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeeccc
Confidence            79999999999999999999999999999999986    58999999999999999999999999999999998765

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0113|consensus

Probab=99.67  E-value=1.5e-16  Score=121.23  Aligned_cols=73  Identities=16%  Similarity=0.305  Sum_probs=70.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++|+.++.++.|+++|++||+|..+.+++|.    |+|||||.|+++.|...|+.+++|++|+|+.|.|+.--
T Consensus       103 TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvER  179 (335)
T KOG0113|consen  103 TLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVER  179 (335)
T ss_pred             eeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEecc
Confidence            99999999999999999999999999999999985    79999999999999999999999999999999998643

>smart00362 RRM_2 RNA recognition motif

Probab=99.66  E-value=6.4e-16  Score=87.67  Aligned_cols=70  Identities=26%  Similarity=0.357  Sum_probs=65.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS   71 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~   71 (83)
                      |||+.+++.....++|++.|++||+|..+.++.+.  +.|+|||.|+++++|++|+..++|..+.|++|.|.
T Consensus         1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~   72 (72)
T smart00362        1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE   72 (72)
T ss_pred             CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence            68999999999999999999999999999999865  67999999999999999999999999999999874

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=99.66  E-value=3.2e-16  Score=123.47  Aligned_cols=75  Identities=24%  Similarity=0.307  Sum_probs=70.6

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      .+|||++|..+..+++|++.|++||+|.+|+|++|.    +.|||||+|.+++||++|++.+|+..|.|++|+|..++.
T Consensus         1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~   79 (562)
T TIGR01628         1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR   79 (562)
T ss_pred             CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence            489999999999999999999999999999999976    579999999999999999999999999999999987763

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=99.66  E-value=4.2e-16  Score=105.03  Aligned_cols=73  Identities=25%  Similarity=0.360  Sum_probs=70.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++|+.+..+++|+..|++||.|..+.+..|.    ++|||||+|.++++|..|+..++|..|.|++|.|..++
T Consensus       117 ~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~  193 (306)
T COG0724         117 TLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ  193 (306)
T ss_pred             eEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence            79999999999999999999999999999999985    69999999999999999999999999999999999964

>KOG0148|consensus

Probab=99.66  E-value=1.3e-16  Score=120.71  Aligned_cols=78  Identities=24%  Similarity=0.253  Sum_probs=72.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      -+||+-|+.+.-.+.|++.|.+||+|+.++|++|.    |+|||||.|-+-+||++|+..|||+||.+|+|+---|-+++
T Consensus        64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp  143 (321)
T KOG0148|consen   64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP  143 (321)
T ss_pred             eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence            37999999999999999999999999999999998    79999999999999999999999999999999977776776


Q ss_pred             cc
Q psy11609         78 FE   79 (83)
Q Consensus        78 ~e   79 (83)
                      .|
T Consensus       144 ~e  145 (321)
T KOG0148|consen  144 SE  145 (321)
T ss_pred             cc
Confidence            54

>PLN03121 nucleic acid binding protein; Provisional

Probab=99.66  E-value=5.4e-16  Score=114.94  Aligned_cols=75  Identities=17%  Similarity=0.221  Sum_probs=70.7

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      .||||++++.++.+++|++.|+.||+|.+|+|++|. ..+||||+|++|++|+.|+ .+||..|.|++|.|++|..+
T Consensus         6 ~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~y   81 (243)
T PLN03121          6 YTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQY   81 (243)
T ss_pred             eEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCccc
Confidence            389999999999999999999999999999999987 5789999999999999999 89999999999999998753

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.65  E-value=5.9e-16  Score=121.28  Aligned_cols=73  Identities=19%  Similarity=0.266  Sum_probs=68.3

Q ss_pred             eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|.+ ...++.|+..|++||.|++|+|+.+ ++|||||+|.++++|++|+++|||..|.|++|+|..+..
T Consensus       277 ~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~  350 (481)
T TIGR01649       277 VLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ  350 (481)
T ss_pred             EEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence            799999997 5788889999999999999999987 579999999999999999999999999999999998854

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>PF14259 RRM_6: RNA recognition motif (a

Probab=99.65  E-value=1.3e-15  Score=89.96  Aligned_cols=67  Identities=21%  Similarity=0.366  Sum_probs=61.7

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      |||++++.++.+++|.+.|+.||+|..+.+....   ++|+|||+|+++++|++|++..+|.++.|++|+
T Consensus         1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~   70 (70)
T PF14259_consen    1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR   70 (70)
T ss_dssp             EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred             CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence            7999999999999999999999999999999975   489999999999999999999999999999985

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>smart00361 RRM_1 RNA recognition motif

Probab=99.64  E-value=8.8e-16  Score=92.64  Aligned_cols=60  Identities=18%  Similarity=0.297  Sum_probs=49.0

Q ss_pred             chhhHHHHHhccCCceeEEE-EeccC------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609         12 SLKDGLYHEYKKHGKVSWVK-IIGQG------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS   71 (83)
Q Consensus        12 ~~~d~L~~eF~kfG~Itsv~-V~~d~------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~   71 (83)
                      .+.+.+.+++++||+|.+|. |..+.      ++|||||+|.+++||.+|++.|||+++.|++|.+.
T Consensus         4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~   70 (70)
T smart00361        4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE   70 (70)
T ss_pred             hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence            34444445555999999995 44432      59999999999999999999999999999999873

>KOG4207|consensus

Probab=99.64  E-value=2.7e-16  Score=115.73  Aligned_cols=76  Identities=21%  Similarity=0.213  Sum_probs=72.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC-CC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH-DV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~-g~   76 (83)
                      +|=|-+|+..+..|+|+..|+|||.|-.|.|..|.    ++|||||-|-.-.||++|+++|+|++|+|++|.|++|. |.
T Consensus        15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~arygr   94 (256)
T KOG4207|consen   15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYGR   94 (256)
T ss_pred             eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcCC
Confidence            68899999999999999999999999999999987    79999999999999999999999999999999999998 55


Q ss_pred             C
Q psy11609         77 D   77 (83)
Q Consensus        77 ~   77 (83)
                      +
T Consensus        95 ~   95 (256)
T KOG4207|consen   95 P   95 (256)
T ss_pred             C
Confidence            4

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.62  E-value=1.9e-15  Score=115.62  Aligned_cols=73  Identities=16%  Similarity=0.251  Sum_probs=69.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++|..+..+++|.+.|++||.|.+|.++.+.    ++|||||+|.++|+|.+|+..|||..|.|++|.|..++
T Consensus       188 ~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~  264 (457)
T TIGR01622       188 KLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ  264 (457)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence            79999999999999999999999999999999875    47999999999999999999999999999999999976

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.62  E-value=1.5e-15  Score=123.78  Aligned_cols=73  Identities=12%  Similarity=0.184  Sum_probs=69.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.|.    ++|||||.|.++|+|++|++.|||..|.|++|.|....
T Consensus       109 rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~  185 (612)
T TIGR01645       109 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS  185 (612)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence            69999999999999999999999999999999885    79999999999999999999999999999999998654

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.61  E-value=3.2e-15  Score=114.35  Aligned_cols=73  Identities=22%  Similarity=0.276  Sum_probs=68.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||.|.++|+|++|+. +||..+.|++|.|..++.
T Consensus        91 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~  167 (457)
T TIGR01622        91 TVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQA  167 (457)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecch
Confidence            79999999999999999999999999999999975    59999999999999999995 999999999999988763

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.60  E-value=3.9e-15  Score=121.40  Aligned_cols=76  Identities=11%  Similarity=0.179  Sum_probs=71.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.|.    ++|||||.|++.++|.+|+..|||..+.|+.|+|..+..|.
T Consensus       206 rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP  285 (612)
T TIGR01645       206 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP  285 (612)
T ss_pred             eEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence            69999999999999999999999999999999975    58999999999999999999999999999999999888543

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=99.60  E-value=4.2e-15  Score=113.78  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=68.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g   75 (83)
                      +|||++|+.+..+++|++.|++||.|.+|+|+.|.    ++|||||+|.++|+|++|++.+|+..+.|  ++|.|.++..
T Consensus       195 ~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~  274 (346)
T TIGR01659       195 NLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEE  274 (346)
T ss_pred             eeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCc
Confidence            69999999999999999999999999999999875    57999999999999999999999999876  7999998873

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>PLN03213 repressor of silencing 3; Provisional

Probab=99.59  E-value=4.1e-15  Score=120.14  Aligned_cols=74  Identities=14%  Similarity=0.236  Sum_probs=71.2

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCc--hHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKA--DDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~p--EdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      |.||||+|+.++.+++|...|+.||.|.+|.|++...+|||||.|..+  .++++|+..+||..+.|++|+|..|.
T Consensus        11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK   86 (759)
T PLN03213         11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK   86 (759)
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence            789999999999999999999999999999999887899999999999  67999999999999999999999986

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.57  E-value=1.2e-14  Score=112.28  Aligned_cols=73  Identities=15%  Similarity=0.127  Sum_probs=69.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|.+.|++||.|.++.|+.+.    ++|||||+|.++++|+.|+..|||..|.|++|.|..+.
T Consensus       297 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~  373 (509)
T TIGR01642       297 RIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC  373 (509)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence            69999999999999999999999999999999875    68999999999999999999999999999999999885

Members of this subfamily are found in plants, metazoa and fungi.

>smart00360 RRM RNA recognition motif

Probab=99.56  E-value=1.6e-14  Score=81.38  Aligned_cols=67  Identities=22%  Similarity=0.366  Sum_probs=60.3

Q ss_pred             eeecCCcchhhHHHHHhccCCceeEEEEeccCC----ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609          5 IYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGG----DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS   71 (83)
Q Consensus         5 v~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~----~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~   71 (83)
                      |.+++.+..+++|++.|++||+|..+++..+.+    .|+|||.|.++++|++|+..++|..+.|++|.|+
T Consensus         1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~   71 (71)
T smart00360        1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK   71 (71)
T ss_pred             CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence            356677778888999999999999999998764    8999999999999999999999999999999874

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=99.56  E-value=1.5e-14  Score=113.38  Aligned_cols=73  Identities=18%  Similarity=0.182  Sum_probs=68.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh--cCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG--SHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~--~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.  ++|||||+|.++|+|++|+..  +|+..+.|++|+|..++..
T Consensus         4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~   78 (481)
T TIGR01649         4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ   78 (481)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence            799999999999999999999999999999996  679999999999999999986  5889999999999998643

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=99.56  E-value=3.5e-14  Score=80.79  Aligned_cols=70  Identities=27%  Similarity=0.413  Sum_probs=66.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS   71 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~   71 (83)
                      +|++.+++.+..+++|+..|+.||+|..+.+..+.   +.++|||.|+++++|+.|++.++|..+.|+++.|.
T Consensus         1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~   73 (74)
T cd00590           1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE   73 (74)
T ss_pred             CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence            58999999999999999999999999999999876   48999999999999999999999999999999986

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.55  E-value=2.2e-14  Score=116.40  Aligned_cols=73  Identities=29%  Similarity=0.401  Sum_probs=68.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccC--CceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKH--GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF   78 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kf--G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~   78 (83)
                      +|||++|+.+..+++|+++|++|  |+|++|++++    +||||+|.++|+|++|+.+|||..|.|++|.|..+..++.
T Consensus       235 ~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~  309 (578)
T TIGR01648       235 ILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK  309 (578)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence            69999999999999999999999  9999999864    5999999999999999999999999999999999976544

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0125|consensus

Probab=99.54  E-value=1.2e-14  Score=112.18  Aligned_cols=72  Identities=26%  Similarity=0.288  Sum_probs=67.9

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      |.|++..+.-.+.||+.-|.|||+|.+|.|+-..  |+|||||+|.+|+||++|..++||.++-||+|.|-.|-
T Consensus        99 LhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT  172 (376)
T KOG0125|consen   99 LHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT  172 (376)
T ss_pred             eEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence            7899999999999999999999999999998743  89999999999999999999999999999999998875

>KOG0123|consensus

Probab=99.51  E-value=3.2e-14  Score=109.96  Aligned_cols=74  Identities=23%  Similarity=0.363  Sum_probs=65.2

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +||-.|..+....+|++-|+.||+|.||+|+.|.  ++|| ||+|.++++|++|++.+||.++.|++|+|.+++..+
T Consensus        79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~  154 (369)
T KOG0123|consen   79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE  154 (369)
T ss_pred             eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence            4665555555555699999999999999999987  7999 999999999999999999999999999999998643

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.50  E-value=8.1e-14  Score=107.70  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=56.8

Q ss_pred             hhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609         13 LKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus        13 ~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +.++|+++|++||.|.+|+|+++.       +.|+|||+|.++|+|++|+.+|||++|.|++|.|+.++
T Consensus       432 ~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~  500 (509)
T TIGR01642       432 IYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYG  500 (509)
T ss_pred             HHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeC
Confidence            567899999999999999999752       36899999999999999999999999999999999876

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=99.48  E-value=7.8e-14  Score=113.19  Aligned_cols=73  Identities=16%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceec-CeeeEEEec
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFF-GCKIDVSPY   73 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~-g~~i~V~~a   73 (83)
                      .+|||++|..+..+++|++.|++||+|.+|+|+.|.   ++|||||+|.++|+|++|++.|||..+. |+.|.|..+
T Consensus        59 ~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S  135 (578)
T TIGR01648        59 CEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS  135 (578)
T ss_pred             CEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc
Confidence            379999999999999999999999999999999985   6999999999999999999999998884 787777654

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0111|consensus

Probab=99.48  E-value=3.7e-14  Score=105.62  Aligned_cols=75  Identities=24%  Similarity=0.314  Sum_probs=71.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++|.|+..+..|-..|=.||+|+.|++..|-    .+|||||+|...|||..|+.+||+..++||.|+|.+|.-+
T Consensus        12 tlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~   90 (298)
T KOG0111|consen   12 TLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE   90 (298)
T ss_pred             eEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence            89999999999999999999999999999999876    4899999999999999999999999999999999999743

>KOG0149|consensus

Probab=99.48  E-value=5e-14  Score=104.40  Aligned_cols=71  Identities=20%  Similarity=0.303  Sum_probs=67.0

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||+|.-++.+++|++.|++||+|..++|+-|.    |+|||||+|+++|.|++|+...| -.|+||+-+|.+|-
T Consensus        15 ifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~   89 (247)
T KOG0149|consen   15 IFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLAS   89 (247)
T ss_pred             EEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhh
Confidence            7999999999999999999999999999999987    79999999999999999998877 68999999998875

>KOG0123|consensus

Probab=99.47  E-value=3.1e-14  Score=110.01  Aligned_cols=75  Identities=17%  Similarity=0.304  Sum_probs=66.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +||+-+++.....+.|+..|+.||.|++++|+.+.   +.|||||||++||+|++|+..|||+++.|++|+|+++|..
T Consensus       272 nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~  349 (369)
T KOG0123|consen  272 NLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRK  349 (369)
T ss_pred             ccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhh
Confidence            46666656666666699999999999999999976   6999999999999999999999999999999999999943

>KOG1548|consensus

Probab=99.43  E-value=3.1e-13  Score=104.69  Aligned_cols=66  Identities=24%  Similarity=0.356  Sum_probs=63.0

Q ss_pred             chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609         12 SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus        12 ~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      .++++|.++++|||.|.+|.|...++.|++.|.|+++|+|+.|++.|+|++|+||+|..++|+|..
T Consensus       288 dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t  353 (382)
T KOG1548|consen  288 DLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT  353 (382)
T ss_pred             HHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence            478889999999999999999988999999999999999999999999999999999999999864

>KOG0117|consensus

Probab=99.39  E-value=8e-13  Score=105.07  Aligned_cols=74  Identities=27%  Similarity=0.411  Sum_probs=68.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCcc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFE   79 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e   79 (83)
                      .|||-+|.-+++++.|+.+|++||.|..|+..+|    ||||+|.+-+||-+||.+|||+.|.|.+|.|.+|.-++-+
T Consensus       261 vLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~  334 (506)
T KOG0117|consen  261 VLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK  334 (506)
T ss_pred             eeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence            4899999999999999999999999999999877    9999999999999999999999999999999999866544

>KOG0114|consensus

Probab=99.39  E-value=1.8e-12  Score=87.17  Aligned_cols=73  Identities=18%  Similarity=0.162  Sum_probs=69.9

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      |||-+|+.+...++.++.|.|||+|..++|-.+. .+|-|||-|++-+||++|+++|+|--+.++.+.|-.||-
T Consensus        21 LyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~   94 (124)
T KOG0114|consen   21 LYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP   94 (124)
T ss_pred             EEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence            8999999999999999999999999999998877 499999999999999999999999999999999999984

>KOG0121|consensus

Probab=99.39  E-value=9.8e-13  Score=91.14  Aligned_cols=75  Identities=15%  Similarity=0.144  Sum_probs=67.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||+++|.-+.++-+++.|++.|+|..|..-.|.    +=||.||.|-+++||..|++-+||..++.++|.++.--|.
T Consensus        38 tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF  116 (153)
T KOG0121|consen   38 TVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGF  116 (153)
T ss_pred             eEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccc
Confidence            89999999999999999999999999955443454    6899999999999999999999999999999999876553

>KOG0122|consensus

Probab=99.38  E-value=1.5e-12  Score=97.25  Aligned_cols=73  Identities=18%  Similarity=0.250  Sum_probs=68.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||=|.+||.++.+++|.+.|.+||.|+.|.|.+|.    ++|||||+|.+-|||.+|+..+||.=.+.-=|.|+.+.
T Consensus       191 tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk  267 (270)
T KOG0122|consen  191 TVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK  267 (270)
T ss_pred             eeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence            67899999999999999999999999999999987    69999999999999999999999998888888888654

>KOG0105|consensus

Probab=99.37  E-value=1.2e-12  Score=95.44  Aligned_cols=75  Identities=17%  Similarity=0.320  Sum_probs=70.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ++||++|..|..+.++.+.|.|||+|+.|.+-..+ +..||||.|++|.||++|+..-+|--++||.|.|+++.|-
T Consensus         8 ~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg   83 (241)
T KOG0105|consen    8 RIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG   83 (241)
T ss_pred             eEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence            68999999999999999999999999999987665 5889999999999999999999999999999999999854

>KOG0131|consensus

Probab=99.35  E-value=1.1e-12  Score=94.82  Aligned_cols=74  Identities=22%  Similarity=0.325  Sum_probs=70.5

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +||||+++.....++-|++.|-.-|+|.++.+.+|.    .+||||++|.+.|||+-|+.-||...+.||||+|..+.
T Consensus        10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas   87 (203)
T KOG0131|consen   10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS   87 (203)
T ss_pred             ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence            699999999999999999999999999999999987    59999999999999999999999999999999998876

>KOG0117|consensus

Probab=99.32  E-value=3.7e-12  Score=101.35  Aligned_cols=73  Identities=19%  Similarity=0.285  Sum_probs=68.8

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCcee-cCeeeEEEecCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHF-FGCKIDVSPYHD   75 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~-~g~~i~V~~a~g   75 (83)
                      +||+++.-|..+|+|.-.|.|-|+|..+++|.|+    ++|||||+|++-|+|++|++.+|+..| -||.|.|..++.
T Consensus        86 VfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva  163 (506)
T KOG0117|consen   86 VFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA  163 (506)
T ss_pred             EEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence            8999999999999999999999999999999995    699999999999999999999999987 799999887764

>KOG0108|consensus

Probab=99.32  E-value=3.6e-12  Score=100.81  Aligned_cols=78  Identities=19%  Similarity=0.280  Sum_probs=73.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC-CC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH-DV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~-g~   76 (83)
                      ++||++...+..++.|...|+..|.|.++++++|+    ++||||++|.++|+|..|++.+||..+.|++|+|..+. .+
T Consensus        20 ~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~   99 (435)
T KOG0108|consen   20 SVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRK   99 (435)
T ss_pred             ceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccc
Confidence            58999999999999999999999999999999998    59999999999999999999999999999999999988 44


Q ss_pred             Ccc
Q psy11609         77 DFE   79 (83)
Q Consensus        77 ~~e   79 (83)
                      +.|
T Consensus       100 ~~~  102 (435)
T KOG0108|consen  100 NAE  102 (435)
T ss_pred             hhH
Confidence            433

>KOG0415|consensus

Probab=99.27  E-value=6e-12  Score=98.65  Aligned_cols=74  Identities=16%  Similarity=0.288  Sum_probs=70.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      -|||-||++-+..++|.-.|++||+|.||.|++|.    +-.||||.|.+.|+.++|+=.|+..+|+.+.|+|.++|.
T Consensus       241 VLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS  318 (479)
T KOG0415|consen  241 VLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS  318 (479)
T ss_pred             eEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence            49999999999999999999999999999999998    466999999999999999999999999999999999884

>KOG0148|consensus

Probab=99.26  E-value=1.8e-11  Score=92.94  Aligned_cols=69  Identities=16%  Similarity=0.284  Sum_probs=65.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP   72 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~   72 (83)
                      |+|+++.+.-..+|.|++.|+.||+|..|+|.+  .+|||||-|++-|-|.+|+-+|||..+.|..+++.-
T Consensus       166 sVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsW  234 (321)
T KOG0148|consen  166 SVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSW  234 (321)
T ss_pred             eEEeCCcCccccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEec
Confidence            799999999888888999999999999999999  599999999999999999999999999999999753

>KOG0145|consensus

Probab=99.26  E-value=2.6e-11  Score=92.26  Aligned_cols=73  Identities=23%  Similarity=0.292  Sum_probs=68.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      -+||-+|+.|+-+..|++.|..||-|++|||++|.    -+|||||+..+.+||--|+..+||-.+.+|-++|.+-.
T Consensus       280 ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt  356 (360)
T KOG0145|consen  280 CIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT  356 (360)
T ss_pred             EEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence            58999999999998899999999999999999998    39999999999999999999999999999999998643

>KOG0127|consensus

Probab=99.26  E-value=7.8e-12  Score=101.64  Aligned_cols=78  Identities=18%  Similarity=0.330  Sum_probs=73.0

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC-C
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH-D   75 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~-g   75 (83)
                      .||||+++..++..+.|.+.|+..|+|.-|.|+.+.    .+|||||+|...||+++|+...++..|.||.|.|++|+ +
T Consensus         6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R   85 (678)
T KOG0127|consen    6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR   85 (678)
T ss_pred             ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence            399999999999999999999999999999999976    49999999999999999999999999999999999999 4


Q ss_pred             CCc
Q psy11609         76 VDF   78 (83)
Q Consensus        76 ~~~   78 (83)
                      +..
T Consensus        86 ~r~   88 (678)
T KOG0127|consen   86 ARS   88 (678)
T ss_pred             ccc
Confidence            443

>KOG0127|consensus

Probab=99.26  E-value=1.7e-11  Score=99.65  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=69.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhc-----CC-ceecCeeeEEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGS-----HE-KHFFGCKIDVS   71 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~-----ng-~~~~g~~i~V~   71 (83)
                      ||||-+|++|+.++.|.++|++||+|..+.++.+.    |+|-|||.|+++.+|.+|+.+.     .| -++.||+|.|.
T Consensus       294 tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~  373 (678)
T KOG0127|consen  294 TVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVT  373 (678)
T ss_pred             eEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeee
Confidence            89999999999999999999999999999999976    7999999999999999999987     45 68899999999


Q ss_pred             ecCC
Q psy11609         72 PYHD   75 (83)
Q Consensus        72 ~a~g   75 (83)
                      +|-+
T Consensus       374 ~Av~  377 (678)
T KOG0127|consen  374 LAVT  377 (678)
T ss_pred             eccc
Confidence            9874

>KOG0109|consensus

Probab=99.24  E-value=9e-12  Score=95.31  Aligned_cols=69  Identities=29%  Similarity=0.413  Sum_probs=66.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|+|+++++....++|+.-|.|||+|..|+|++|    ||||.|...|||..|++.+||..|.|++++|++..
T Consensus        80 kl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~st  148 (346)
T KOG0109|consen   80 KLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLST  148 (346)
T ss_pred             ccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeEEEEeeccchHHHHhcccccccccceeeeeeec
Confidence            6899999999999999999999999999999775    99999999999999999999999999999999875

>KOG0144|consensus

Probab=99.20  E-value=1.2e-11  Score=98.37  Aligned_cols=73  Identities=16%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCc-eecC--eeeEEEecCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEK-HFFG--CKIDVSPYHD   75 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~-~~~g--~~i~V~~a~g   75 (83)
                      |||+-++-.+.+.++++.|++||.|..|.|++|.   ++|+|||+|++-|-|-.|+++|||. .+-|  .||.|..|+.
T Consensus       127 LFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADt  205 (510)
T KOG0144|consen  127 LFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADT  205 (510)
T ss_pred             hhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEeccc
Confidence            8999999999999999999999999999999987   7999999999999999999999996 5555  5899999984

>KOG0110|consensus

Probab=99.20  E-value=4e-11  Score=98.97  Aligned_cols=72  Identities=21%  Similarity=0.301  Sum_probs=67.7

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||+-+++.++..++|..+|++.|.|-|+.|..-.       |-|||||.|.+||+|+.|++.|+|..|+|.+|+|.++.
T Consensus       518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~  596 (725)
T KOG0110|consen  518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE  596 (725)
T ss_pred             hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence            8999999999999999999999999999887643       45999999999999999999999999999999999988

>KOG0124|consensus

Probab=99.20  E-value=1.9e-11  Score=96.46  Aligned_cols=72  Identities=13%  Similarity=0.190  Sum_probs=67.6

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||..+++--+|.|+..|..||+|.|+...-|+    .+|||||+|+-||-|.-|++.|||.|++||.|+|-.-+
T Consensus       116 vYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs  191 (544)
T KOG0124|consen  116 VYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS  191 (544)
T ss_pred             eeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence            7999999999999999999999999999998887    59999999999999999999999999999999997544

>KOG0145|consensus

Probab=99.19  E-value=5.3e-11  Score=90.61  Aligned_cols=72  Identities=24%  Similarity=0.300  Sum_probs=66.0

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      |.|--|....+.|+|+..|+..|+|.|||+++|.    |-|||||.|-+|+||++|+..+||-.+-.+.|+|..|-
T Consensus        44 LIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR  119 (360)
T KOG0145|consen   44 LIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR  119 (360)
T ss_pred             eeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence            5556667777888899999999999999999997    68999999999999999999999999999999999874

>KOG0126|consensus

Probab=99.17  E-value=6.5e-12  Score=91.18  Aligned_cols=72  Identities=11%  Similarity=0.256  Sum_probs=69.2

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|+|+++.+-++.+|--.|+.||.|..|.+++|.    |+||||.||++....-=|+.++||..|.||.|+|.+--
T Consensus        38 Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~  113 (219)
T KOG0126|consen   38 IYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS  113 (219)
T ss_pred             EEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence            7999999999999999999999999999999997    79999999999999999999999999999999999865

>KOG0130|consensus

Probab=99.16  E-value=5e-11  Score=83.50  Aligned_cols=75  Identities=15%  Similarity=0.267  Sum_probs=69.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC--C
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH--D   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~--g   75 (83)
                      -|||.....+..++++.+.|..||+|.++.+-.|.    .+|||+|.|.+.++|+.|+.+|||..+.|.+|.|..+-  |
T Consensus        74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g  153 (170)
T KOG0130|consen   74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG  153 (170)
T ss_pred             EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence            48999999999999999999999999999998887    59999999999999999999999999999999998653  5


Q ss_pred             C
Q psy11609         76 V   76 (83)
Q Consensus        76 ~   76 (83)
                      |
T Consensus       154 p  154 (170)
T KOG0130|consen  154 P  154 (170)
T ss_pred             C
Confidence            5

>KOG0147|consensus

Probab=99.14  E-value=6.1e-11  Score=95.72  Aligned_cols=72  Identities=22%  Similarity=0.300  Sum_probs=68.8

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      |+|+.|.....++.|+.-|+.||+|-.|.++.|.    ++|||||+|.++|+|++|+..|||-.|.|+.|.|.+-+
T Consensus       281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~  356 (549)
T KOG0147|consen  281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT  356 (549)
T ss_pred             hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence            7999999999999999999999999999999995    69999999999999999999999999999999998765

>KOG0131|consensus

Probab=99.13  E-value=5.4e-11  Score=86.02  Aligned_cols=74  Identities=19%  Similarity=0.301  Sum_probs=64.3

Q ss_pred             EeeeecCCcchhhH-HHHHhccCCceeEE-EEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          3 LFIYVVSDTSLKDG-LYHEYKKHGKVSWV-KIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         3 lfv~k~~d~~~~d~-L~~eF~kfG~Itsv-~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      |||++|.+ .+++. |++-|++||.|.+. +||+|+    ++|||||.|++-|-++.|+..|||+.+..+||.|+.+-..
T Consensus        99 lfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~  177 (203)
T KOG0131|consen   99 LFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK  177 (203)
T ss_pred             ccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence            78888777 55555 99999999999842 889877    5889999999999999999999999999999999998754


Q ss_pred             C
Q psy11609         77 D   77 (83)
Q Consensus        77 ~   77 (83)
                      +
T Consensus       178 ~  178 (203)
T KOG0131|consen  178 D  178 (203)
T ss_pred             C
Confidence            4

>KOG4206|consensus

Probab=99.11  E-value=1.6e-10  Score=84.94  Aligned_cols=74  Identities=19%  Similarity=0.278  Sum_probs=67.5

Q ss_pred             eEeeeecCCcchhhHHHH----HhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYH----EYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~----eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||-.++|..-+++|++    .|+.||+|..|.+.+.. .+|-|||.|++++-|..|+++|+|--|+|++++++.|.-
T Consensus        11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s   89 (221)
T KOG4206|consen   11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS   89 (221)
T ss_pred             eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence            899999998877777555    99999999999998877 599999999999999999999999999999999998864

>KOG0109|consensus

Probab=99.07  E-value=2.5e-10  Score=87.46  Aligned_cols=71  Identities=27%  Similarity=0.374  Sum_probs=67.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      -|||++|.+...++.|+..|.+||+|..|.|++.    ||||+.++-.-|++|++++||-.|.|.-|+|+.+.-+
T Consensus         4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK   74 (346)
T KOG0109|consen    4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK   74 (346)
T ss_pred             chhccCCCcccchHHHHHHHHhhCceEeeeeecc----cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence            3899999999999999999999999999999875    9999999999999999999999999999999998765

>KOG0153|consensus

Probab=98.98  E-value=1.6e-09  Score=84.23  Aligned_cols=72  Identities=21%  Similarity=0.364  Sum_probs=65.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc-eecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK-HFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~-~~~g~~i~V~~a~g~   76 (83)
                      ||||+++.|..++++|+.+|-+||.|.|+.|+.  .+|-|||+|.+-+-|+.|..+...+ .|.|+.|.|. |-.+
T Consensus       230 tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~-Wg~~  302 (377)
T KOG0153|consen  230 TLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK-WGRP  302 (377)
T ss_pred             EEEecccccchhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE-eCCC
Confidence            899999999999999999999999999999987  6789999999999999999888776 5599999998 6543

>KOG0226|consensus

Probab=98.96  E-value=5.3e-10  Score=84.28  Aligned_cols=68  Identities=22%  Similarity=0.278  Sum_probs=63.9

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV   70 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V   70 (83)
                      +|-|-++.+...+-|-+.|+||=.-...+|++|.    ++|||||.|++|.|+..|+++|||+.++.+||..
T Consensus       193 IfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl  264 (290)
T KOG0226|consen  193 IFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL  264 (290)
T ss_pred             eecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence            7888889999999999999999999999999987    7999999999999999999999999999999874

>KOG0132|consensus

Probab=98.92  E-value=2.6e-09  Score=89.52  Aligned_cols=75  Identities=13%  Similarity=0.160  Sum_probs=70.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF   78 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~   78 (83)
                      ||||+++.-...+++|...|+.||.|.||.++.  ++|.|||+.-+-.||.+|+.+|+.--+.++.|+|.-|-|+-.
T Consensus       423 TLwvG~i~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~  497 (894)
T KOG0132|consen  423 TLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP  497 (894)
T ss_pred             eeeeccccchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence            999999999999999999999999999999987  899999999999999999999999999999999887775443

>KOG0144|consensus

Probab=98.89  E-value=2.9e-09  Score=84.89  Aligned_cols=74  Identities=20%  Similarity=0.287  Sum_probs=68.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCc-eecC--eeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEK-HFFG--CKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~-~~~g--~~i~V~~a~   74 (83)
                      -|||+..+-...+.+|++.|++||.|.+|.|++|.    ++|+.||.|.+.+||++|+.+++.+ .|-|  -||.|.+|+
T Consensus        36 KlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad  115 (510)
T KOG0144|consen   36 KLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYAD  115 (510)
T ss_pred             hheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccc
Confidence            38999999999999999999999999999999998    6999999999999999999999885 5655  689999998


Q ss_pred             C
Q psy11609         75 D   75 (83)
Q Consensus        75 g   75 (83)
                      +
T Consensus       116 ~  116 (510)
T KOG0144|consen  116 G  116 (510)
T ss_pred             h
Confidence            7

>KOG0106|consensus

Probab=98.88  E-value=1.6e-09  Score=79.44  Aligned_cols=69  Identities=19%  Similarity=0.303  Sum_probs=64.2

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +||+++.....+.+|++.|++||.|..|.+    ..|||||.|.++.||++|+..+||+.|.|-.+-|+++-+
T Consensus         4 v~vg~~~~~~~~~d~E~~f~~yg~~~d~~m----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~   72 (216)
T KOG0106|consen    4 VYIGRLPYRARERDVERFFKGYGKIPDADM----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG   72 (216)
T ss_pred             eeecccCCccchhHHHHHHhhcccccccee----ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence            799999999999999999999999998877    468999999999999999999999999999988887774

>KOG4661|consensus

Probab=98.85  E-value=4.7e-09  Score=86.60  Aligned_cols=73  Identities=26%  Similarity=0.364  Sum_probs=67.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-C---ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-G---DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~---~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      .|+|.+|+..+.--+|...|+|||+|.-.+|+-.. +   +-||||++++.+||.+|+.+++...|.|+-|.|+-+.
T Consensus       407 NlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK  483 (940)
T KOG4661|consen  407 NLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK  483 (940)
T ss_pred             ceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence            48999999999999999999999999999998753 2   5599999999999999999999999999999999887

>KOG4205|consensus

Probab=98.85  E-value=2.7e-09  Score=81.53  Aligned_cols=73  Identities=15%  Similarity=0.249  Sum_probs=64.5

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +.||+++++-++.++.|++.|+.||+|+.|+||+|+    ++||+||+|.+|+....++.. .-..|+|+.|.+..|-
T Consensus         7 ~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av   83 (311)
T KOG4205|consen    7 GKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV   83 (311)
T ss_pred             cceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence            469999999999999999999999999999999998    599999999999999988854 3356888888877664

>KOG0146|consensus

Probab=98.76  E-value=9.5e-09  Score=78.67  Aligned_cols=76  Identities=20%  Similarity=0.259  Sum_probs=69.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      .||+--|..+--+-+|..-|-.||.|.|.||..|+    |+-||||.|.||-.|+.|+++|||--|+=|+++|++---+|
T Consensus       287 NlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkd  366 (371)
T KOG0146|consen  287 NLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD  366 (371)
T ss_pred             eEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccc
Confidence            48888888888888899999999999999999998    79999999999999999999999999999999998754443

>KOG0533|consensus

Probab=98.67  E-value=6.4e-08  Score=72.00  Aligned_cols=76  Identities=14%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|.|.+|...++.++|.+.|..||.+..|-|+++.   +.|-|=|.|...+||..|+...||..++|++|.+++...|.
T Consensus        85 ~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~  163 (243)
T KOG0533|consen   85 KVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS  163 (243)
T ss_pred             eeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence            58899999999999999999999999999999988   57999999999999999999999999999999999887664

>KOG4209|consensus

Probab=98.61  E-value=6.9e-08  Score=71.01  Aligned_cols=72  Identities=14%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      .+|++++....+.+.+..+|+-||.|..|.|..|.    ++|||||.|.+++.+.+|+. |||..|.|++|.|+++.
T Consensus       103 sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r  178 (231)
T KOG4209|consen  103 SVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR  178 (231)
T ss_pred             eEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence            47899999999999999999999999878887765    69999999999999999998 99999999999999876

>KOG0116|consensus

Probab=98.60  E-value=9e-08  Score=75.74  Aligned_cols=72  Identities=21%  Similarity=0.272  Sum_probs=64.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ++||..|..++..+.|+++|++||.|....|....    ...||||.|.+-+.++.|+.+. =.+++|++++|+--.
T Consensus       290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~  365 (419)
T KOG0116|consen  290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKR  365 (419)
T ss_pred             ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecc
Confidence            58999999999999999999999999998887743    3489999999999999999886 678899999998765

>KOG4205|consensus

Probab=98.59  E-value=8.1e-08  Score=73.49  Aligned_cols=73  Identities=21%  Similarity=0.317  Sum_probs=67.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      .+||++++.+..+.+|+..|.+||.|+.+.+|.|.    ++|||||.|.+.+.+++++ ...-..|.|+++.|-.|.-
T Consensus        99 kiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~p  175 (311)
T KOG4205|consen   99 KIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAIP  175 (311)
T ss_pred             EEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeeccc
Confidence            58999999999999999999999999999999987    5999999999999888886 6688899999999988874

>KOG4208|consensus

Probab=98.51  E-value=3.2e-07  Score=67.25  Aligned_cols=70  Identities=10%  Similarity=0.221  Sum_probs=55.3

Q ss_pred             eeeecCCcchhhHHHHHhccC-CceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          4 FIYVVSDTSLKDGLYHEYKKH-GKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         4 fv~k~~d~~~~d~L~~eF~kf-G~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      ++..+..-..+..+..-|..| |+|+.+++.+..    |+|||||.|.++|.|.=|-+.||+-+|+|+-+.|..-
T Consensus        53 ~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm  127 (214)
T KOG4208|consen   53 YVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM  127 (214)
T ss_pred             eecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence            334444444455566777777 899977776643    7999999999999999999999999999999988654

>KOG1996|consensus

Probab=98.50  E-value=2.4e-07  Score=71.51  Aligned_cols=66  Identities=27%  Similarity=0.295  Sum_probs=57.7

Q ss_pred             CCcchhhHHHHHhccCCceeEEEEeccCC-----ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          9 SDTSLKDGLYHEYKKHGKVSWVKIIGQGG-----DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         9 ~d~~~~d~L~~eF~kfG~Itsv~V~~d~~-----~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      -|+.+++...+|+.|||+|..|.|+-+++     .---||.|+++|+|-+|+-.|||+.|+||-+...++.
T Consensus       295 vd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn  365 (378)
T KOG1996|consen  295 VDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN  365 (378)
T ss_pred             ccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence            47888899999999999999999998873     2357999999999999999999999999988765543

>KOG0151|consensus

Probab=98.48  E-value=2.2e-07  Score=77.76  Aligned_cols=72  Identities=18%  Similarity=0.239  Sum_probs=66.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      -|||++++...+++.|-..|.+||+|.+|+||-..       ++-.|||.|=+--||++|+..|+|+++.+.++...-.
T Consensus       176 Nlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg  254 (877)
T KOG0151|consen  176 NLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG  254 (877)
T ss_pred             ceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence            38999999999999999999999999999999865       3669999999999999999999999999999886544

>KOG0147|consensus

Probab=98.47  E-value=2.9e-07  Score=74.71  Aligned_cols=65  Identities=23%  Similarity=0.263  Sum_probs=57.0

Q ss_pred             cCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          8 VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         8 ~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      +-|..|+|++.+|+.|||+|.-|.|-.. |.|+-||-|.+.+.|-.|..+|||+||.||-|....-
T Consensus       461 n~d~eI~edV~Eec~k~g~v~hi~vd~n-s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~  525 (549)
T KOG0147|consen  461 NWDQEIREDVIEECGKHGKVCHIFVDKN-SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL  525 (549)
T ss_pred             chhhHHHHHHHHHHHhcCCeeEEEEccC-CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence            3477899999999999999987777443 4599999999999999999999999999999987653

>KOG2202|consensus

Probab=98.47  E-value=4.9e-08  Score=73.23  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=56.1

Q ss_pred             hHHHHHhc-cCCceeEEEEeccCC---ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609         15 DGLYHEYK-KHGKVSWVKIIGQGG---DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus        15 d~L~~eF~-kfG~Itsv~V~~d~~---~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      ++++.|++ |||.|.+++|.....   .|=.||.|+..|+|.+|++.+||+|+.|+||+.++..-.+
T Consensus        83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~  149 (260)
T KOG2202|consen   83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD  149 (260)
T ss_pred             HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence            67888898 999999998877553   8999999999999999999999999999999988876443

>KOG1190|consensus

Probab=98.43  E-value=9.4e-07  Score=70.48  Aligned_cols=76  Identities=17%  Similarity=0.291  Sum_probs=66.8

Q ss_pred             eEeeeecCCcchhhH-HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609          2 ALFIYVVSDTSLKDG-LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF   78 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~-L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~   78 (83)
                      .|-|..|..+.+..+ |+-.|+-||+|-.|+|..... --|+|.+.++..|.=|+++++|..+.||+|+|.+..-++.
T Consensus       299 vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v  375 (492)
T KOG1190|consen  299 VLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV  375 (492)
T ss_pred             EEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence            477888887776666 999999999999999988654 6899999999999999999999999999999999865443

>KOG4212|consensus

Probab=98.39  E-value=5e-07  Score=72.83  Aligned_cols=70  Identities=23%  Similarity=0.289  Sum_probs=63.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP   72 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~   72 (83)
                      ++||-++..|-+=+-|++.|..||.|-.+.||-.. +--|.|-|.+||||++|+..|||..+.|+.|.|..
T Consensus       538 qIiirNlP~dfTWqmlrDKfre~G~v~yadime~G-kskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y  607 (608)
T KOG4212|consen  538 QIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENG-KSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTY  607 (608)
T ss_pred             EEEEecCCccccHHHHHHHHHhccceehhhhhccC-CccceEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence            68999999999999999999999999999996544 33349999999999999999999999999999975

>KOG0146|consensus

Probab=98.38  E-value=3.9e-07  Score=69.94  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=64.2

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCc-eecC--eeeEEEecCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEK-HFFG--CKIDVSPYHD   75 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~-~~~g--~~i~V~~a~g   75 (83)
                      ||||-|+-..-+|+.++.|..||.|.+|.|.+-.   ++|.|||-|++--||..|++.++|. .+-|  ..+-|..++.
T Consensus        22 lfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADT  100 (371)
T KOG0146|consen   22 LFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADT  100 (371)
T ss_pred             hhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccc
Confidence            8999999999999999999999999999999854   7999999999999999999999994 4444  5566777763

>KOG0120|consensus

Probab=98.38  E-value=9.8e-07  Score=71.27  Aligned_cols=63  Identities=22%  Similarity=0.286  Sum_probs=55.0

Q ss_pred             chhhHHHHHhccCCceeEEEEecc-C------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609         12 SLKDGLYHEYKKHGKVSWVKIIGQ-G------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus        12 ~~~d~L~~eF~kfG~Itsv~V~~d-~------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      .|.++++.+|+|||.|++|.|.++ .      +-|=-||.|.++|++++|+.+|+|+.|.||.+-....+
T Consensus       421 eIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd  490 (500)
T KOG0120|consen  421 EILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD  490 (500)
T ss_pred             HHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence            466778889999999999999998 3      36677999999999999999999999999998766543

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=98.30  E-value=2.1e-06  Score=55.67  Aligned_cols=68  Identities=24%  Similarity=0.291  Sum_probs=47.5

Q ss_pred             eEeeeecCCc----chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDT----SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~----~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      .|+|.+|..+    .++.-|++.+.-+|    -+|+.- +.+-|+|-|.++|.|++|...|+|+.++|..|.|....
T Consensus         4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCG----GkVl~v-~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~   75 (90)
T PF11608_consen    4 LLYVSNLPTNKDPSSIKNRLRQLSDNCG----GKVLSV-SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP   75 (90)
T ss_dssp             EEEEES--TTS-HHHHHHHHHHHHHTTT------EEE---TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHhhccC----CEEEEE-eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence            4677777653    56777999999887    233222 46899999999999999999999999999999999885

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

>KOG4212|consensus

Probab=98.28  E-value=2.1e-06  Score=69.32  Aligned_cols=72  Identities=19%  Similarity=0.241  Sum_probs=66.8

Q ss_pred             eEeeeecCCcchhhHHHHHhc-cCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYK-KHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~-kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      .+|+.+...|..=++|++.++ |-|.|+=|.+.-|.   ++|.|.|+|++||.++||++.||--.+.||+|.|.--
T Consensus        46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd  121 (608)
T KOG4212|consen   46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED  121 (608)
T ss_pred             eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence            379999999999999999998 88999999999887   5999999999999999999999999999999998643

>KOG0106|consensus

Probab=98.26  E-value=4.7e-07  Score=66.48  Aligned_cols=66  Identities=23%  Similarity=0.366  Sum_probs=56.8

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP   72 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~   72 (83)
                      |++-+++.+.-.++|.+.|.++|.++.+..    ..++|||+|+..+||++|+..++|+.+.||.|.|..
T Consensus       102 ~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~  167 (216)
T KOG0106|consen  102 LIVRNLSLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK  167 (216)
T ss_pred             eeeccchhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence            455566677777899999999999975544    567999999999999999999999999999999843

>KOG1457|consensus

Probab=98.25  E-value=4.5e-06  Score=62.69  Aligned_cols=73  Identities=11%  Similarity=0.130  Sum_probs=59.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCC-----ceEEEEEeCCchHHHHHHhhcCCceec---CeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGG-----DRYGLVCFKKADDAEKAILGSHEKHFF---GCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~-----~g~afV~F~~pEdA~~A~~~~ng~~~~---g~~i~V~~a   73 (83)
                      ||||.+|..|.-..+|+-.|..|---..+.+-....     +-+|||+|.+-.+|..|++++||..|+   +..+++++|
T Consensus        36 TLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElA  115 (284)
T KOG1457|consen   36 TLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELA  115 (284)
T ss_pred             eeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeeh
Confidence            899999999999999888888764444455444332     479999999999999999999999994   788888888


Q ss_pred             C
Q psy11609         74 H   74 (83)
Q Consensus        74 ~   74 (83)
                      .
T Consensus       116 K  116 (284)
T KOG1457|consen  116 K  116 (284)
T ss_pred             h
Confidence            6

>KOG4454|consensus

Probab=98.24  E-value=7.2e-07  Score=66.60  Aligned_cols=76  Identities=12%  Similarity=0.050  Sum_probs=69.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      ||||+++.....++-|++.|-.=|+|.+|+|..+.  ..-||||.|.+.-...-|++-|||..+++.+|.|++--|.+
T Consensus        11 tl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~s   88 (267)
T KOG4454|consen   11 TLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNS   88 (267)
T ss_pred             HHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCCC
Confidence            89999999999999999999999999999998765  34499999999999999999999999999999999987753

>KOG0124|consensus

Probab=98.22  E-value=3.5e-06  Score=67.02  Aligned_cols=76  Identities=11%  Similarity=0.179  Sum_probs=68.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      -+||.....|--+++|+..|..||+|.+|++.+++    .+||||++|.+....++|+..||=--++|.=++|--.-.|+
T Consensus       212 RiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP  291 (544)
T KOG0124|consen  212 RIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP  291 (544)
T ss_pred             eEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCC
Confidence            37889999999999999999999999999999987    49999999999999999999999999999999987665443

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=98.21  E-value=2.8e-06  Score=55.60  Aligned_cols=73  Identities=21%  Similarity=0.343  Sum_probs=45.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC-----ceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE-----KHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng-----~~~~g~~i~V~~a~g~   76 (83)
                      -|.+.++..++..++|.+.|++||+|.-|....  ..--|+|-|.+|+.|++|+..+.-     ..+.+.++.+++..|-
T Consensus         3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGe   80 (105)
T PF08777_consen    3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGE   80 (105)
T ss_dssp             EEEEEE--SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HH
T ss_pred             EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCH
Confidence            366677888888999999999999998666544  566999999999999999886653     4778888888877663

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>KOG0110|consensus

Probab=98.18  E-value=1.9e-06  Score=71.85  Aligned_cols=73  Identities=14%  Similarity=0.240  Sum_probs=65.5

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      |.|-+++......+++..|..||.|.+|.|..-.    .+|||||.|-+|.||.+|++++....+.||.+-.+-|.-
T Consensus       616 IlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~  692 (725)
T KOG0110|consen  616 ILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS  692 (725)
T ss_pred             eeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence            5677788899999999999999999999998852    499999999999999999999999999999998776653

>KOG1457|consensus

Probab=98.12  E-value=2.1e-06  Score=64.44  Aligned_cols=62  Identities=19%  Similarity=0.240  Sum_probs=57.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF   63 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~   63 (83)
                      ||||.+|+.+..+|.|+..|++|--.+-.+|...+.--+||+.|+.-|.|++||.++.|-.|
T Consensus       212 tlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~  273 (284)
T KOG1457|consen  212 TLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL  273 (284)
T ss_pred             hHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence            89999999999999999999999889989998877788999999999999999999998766

>KOG4660|consensus

Probab=97.97  E-value=4.2e-06  Score=68.16  Aligned_cols=67  Identities=18%  Similarity=0.289  Sum_probs=60.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      ||+|.++..+...++|...|+.||+|..|.- -...+|--||+|=+-.+|+.|++++|+..+.|++|.
T Consensus        77 ~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k  143 (549)
T KOG4660|consen   77 TLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK  143 (549)
T ss_pred             eEEEEecCCcCCHHHHHHHHHhhcchhhhhc-ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence            7999999999999999999999999997432 223689999999999999999999999999999998

>KOG4210|consensus

Probab=97.93  E-value=4.6e-06  Score=62.90  Aligned_cols=71  Identities=13%  Similarity=0.243  Sum_probs=64.9

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +||+.++++..+|+|+.+|..+|.|+++++.-+.    ++|||+|+|++-.++..|+.. +...++|+|+.+.-..
T Consensus       188 ~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  262 (285)
T KOG4210|consen  188 FFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE  262 (285)
T ss_pred             eeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence            4588999999999999999999999999998877    499999999999999999988 8999999999988766

>KOG0112|consensus

Probab=97.92  E-value=2.4e-06  Score=72.75  Aligned_cols=77  Identities=13%  Similarity=0.008  Sum_probs=71.3

Q ss_pred             ecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccc--cCC
Q psy11609          7 VVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFEL--EFR   83 (83)
Q Consensus         7 k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~--e~~   83 (83)
                      +..|..+++.++++|.++|+++.+.+.....++||.+.|+.-++|.+++..-.++.|+|+++.+.-|.|++.+.  +||
T Consensus        18 R~vd~c~~~~~r~~~~~~gd~~~~~~~~k~~er~g~~~fr~~~~~~~~~~~~~~k~f~g~~~e~~~~~g~~~s~~~~~r   96 (975)
T KOG0112|consen   18 RIVDICVDWWDRSAVITLGDMEPANLLLKRMERVGRNNFREHKVAVDFCSDRFSKYFIGRGKENIEVAGRSSSPTSSRR   96 (975)
T ss_pred             cccchhhhhcchhhhhhccccccchhhcchhhhcchhhhhhhcchhhhhhhhhhhhhccccccceeeecccCCCccccC
Confidence            45577788889999999999999999999999999999999999999999999999999999999999998887  665

>KOG1548|consensus

Probab=97.84  E-value=5.5e-05  Score=59.27  Aligned_cols=74  Identities=20%  Similarity=0.188  Sum_probs=66.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCcee--------EEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVS--------WVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV   70 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~It--------sv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V   70 (83)
                      .+||.+|+.|.+-+...+.|+|+|-|-        .||+.++.   -+|=|++||-..|..+=|+..|++-.|.|++|+|
T Consensus       136 ~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rV  215 (382)
T KOG1548|consen  136 SVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRV  215 (382)
T ss_pred             eEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEE
Confidence            489999999999999999999999775        36666665   3899999999999999999999999999999999


Q ss_pred             EecCC
Q psy11609         71 SPYHD   75 (83)
Q Consensus        71 ~~a~g   75 (83)
                      +-|+.
T Consensus       216 erAkf  220 (382)
T KOG1548|consen  216 ERAKF  220 (382)
T ss_pred             ehhhh
Confidence            99983

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=97.70  E-value=8.1e-05  Score=43.31  Aligned_cols=41  Identities=20%  Similarity=0.374  Sum_probs=33.7

Q ss_pred             hhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHH
Q psy11609         13 LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAI   55 (83)
Q Consensus        13 ~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~   55 (83)
                      ..+.+.+.|+.||+|+...+-  ...-+.+|+|+++.+|++|+
T Consensus        13 ~~~~vl~~F~~fGeI~~~~~~--~~~~~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen   13 LAEEVLEHFASFGEIVDIYVP--ESTNWMYLKYKSRKDAEKAL   53 (53)
T ss_pred             HHHHHHHHHHhcCCEEEEEcC--CCCcEEEEEECCHHHHHhhC
Confidence            345566689999999987774  35679999999999999995

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=97.60  E-value=0.00039  Score=45.55  Aligned_cols=56  Identities=11%  Similarity=0.173  Sum_probs=41.8

Q ss_pred             hhhHHHHHhccCCceeEEEEe-----------ccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609         13 LKDGLYHEYKKHGKVSWVKII-----------GQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus        13 ~~d~L~~eF~kfG~Itsv~V~-----------~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      ....+-++|++||+|.+..-+           ......+--|+|.+|.+|.+|++. ||+.|.|.=|-
T Consensus        18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv   84 (100)
T PF05172_consen   18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV   84 (100)
T ss_dssp             GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred             HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence            455678899999999866411           111356889999999999999965 99999886554

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG2314|consensus

Probab=97.53  E-value=0.00014  Score=60.23  Aligned_cols=59  Identities=24%  Similarity=0.191  Sum_probs=49.1

Q ss_pred             chhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecC-eeeEE
Q psy11609         12 SLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFG-CKIDV   70 (83)
Q Consensus        12 ~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g-~~i~V   70 (83)
                      -++-.|...|+|+|+|+.....-+.   ..||.|+.|.++.+|++|+..+||+-|+- ....|
T Consensus        76 klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v  138 (698)
T KOG2314|consen   76 KLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV  138 (698)
T ss_pred             HHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence            3555688899999999999888665   59999999999999999999999987753 34433

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=97.37  E-value=0.0011  Score=46.30  Aligned_cols=59  Identities=22%  Similarity=0.359  Sum_probs=48.3

Q ss_pred             CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609         10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus        10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      |+.+-+.|-+.|+.||.+.=|+...+    -=.|+|++-+.|-+|+ .|+|..+.|+.|.|.+-
T Consensus        46 dd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LK  104 (146)
T PF08952_consen   46 DDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLK  104 (146)
T ss_dssp             -HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE-
T ss_pred             CHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHH-ccCCcEECCEEEEEEeC
Confidence            34445578889999999998877663    6789999999999998 78999999999999873

; PDB: 1UFW_A 2DNR_A.

>KOG1995|consensus

Probab=97.30  E-value=0.00025  Score=55.40  Aligned_cols=78  Identities=21%  Similarity=0.241  Sum_probs=68.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCcee--------EEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVS--------WVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~It--------sv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      |+||-.+.+.+.++.|+..|..+|.|.        .++|-.|.    +++=|.|+|.+|--|+.|+.-.+++.|.|-+|.
T Consensus        68 ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ik  147 (351)
T KOG1995|consen   68 TIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIK  147 (351)
T ss_pred             cceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCch
Confidence            789999999999999999999999884        34444444    699999999999999999999999999999999


Q ss_pred             EEecC-CCCcc
Q psy11609         70 VSPYH-DVDFE   79 (83)
Q Consensus        70 V~~a~-g~~~e   79 (83)
                      |.+|. .+++|
T Consensus       148 vs~a~~r~~ve  158 (351)
T KOG1995|consen  148 VSLAERRTGVE  158 (351)
T ss_pred             hhhhhhccCcc
Confidence            99998 55444

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=97.12  E-value=0.0013  Score=52.15  Aligned_cols=70  Identities=11%  Similarity=0.231  Sum_probs=54.9

Q ss_pred             EeeeecCCcchhhH----HH--HHhccCCceeEEEEeccCC-----ce-EE-EEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609          3 LFIYVVSDTSLKDG----LY--HEYKKHGKVSWVKIIGQGG-----DR-YG-LVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus         3 lfv~k~~d~~~~d~----L~--~eF~kfG~Itsv~V~~d~~-----~g-~a-fV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      +||.+++...-.++    |.  +-|..||+|.++.|-+.-+     .+ +| ||+|.+-|||.+|+.+.+|.+++||-|+
T Consensus       117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lk  196 (480)
T COG5175         117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLK  196 (480)
T ss_pred             eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEe
Confidence            56777776655554    43  3799999999998877441     22 32 9999999999999999999999999998


Q ss_pred             EEe
Q psy11609         70 VSP   72 (83)
Q Consensus        70 V~~   72 (83)
                      .+.
T Consensus       197 atY  199 (480)
T COG5175         197 ATY  199 (480)
T ss_pred             eec
Confidence            653

>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2

Probab=97.07  E-value=0.0011  Score=43.24  Aligned_cols=51  Identities=18%  Similarity=0.141  Sum_probs=38.3

Q ss_pred             chhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceec
Q psy11609         12 SLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFF   64 (83)
Q Consensus        12 ~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~   64 (83)
                      .+.+.|-+.|  .|..-=+.+.-|.    +.|||||.|.+|+.|.+-.+.++|+...
T Consensus        17 ~L~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~   71 (97)
T PF04059_consen   17 MLIQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP   71 (97)
T ss_pred             HHHHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence            3334444443  3666667777665    5999999999999999999999998663

It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).

>KOG1456|consensus

Probab=97.06  E-value=0.0025  Score=51.01  Aligned_cols=70  Identities=20%  Similarity=0.301  Sum_probs=59.8

Q ss_pred             eeeecCCcchhhH-HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          4 FIYVVSDTSLKDG-LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         4 fv~k~~d~~~~d~-L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      -|-+|.-..+.-+ |+..|=-||.|..|+-|+. ..|-|.|..-+++..++|++++|+.-++|.+|.|..+.
T Consensus       291 MVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-k~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk  361 (494)
T KOG1456|consen  291 MVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-KPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK  361 (494)
T ss_pred             EEEeccccccchhhhhhhhhhcCceeeEEEeec-ccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence            3445554444444 9999999999999999996 57899999999999999999999999999999998765

>KOG1456|consensus

Probab=97.03  E-value=0.0032  Score=50.39  Aligned_cols=71  Identities=18%  Similarity=0.309  Sum_probs=59.7

Q ss_pred             EeeeecCCcchhhH-HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec--CeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDG-LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF--GCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~-L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~--g~~i~V~~a~   74 (83)
                      ||-.-|..-.|.-| |+..+...|+|-.|.|++- ..==|.|+|.+-+-|++|..+|||.-|.  =|.|+|+.|.
T Consensus       124 l~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk  197 (494)
T KOG1456|consen  124 LFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK  197 (494)
T ss_pred             EEEeecCccccchhhhhhhcCCCCceEEEEEEec-cceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence            56666666666666 9999999999999999996 3346999999999999999999998773  3899999886

>KOG0120|consensus

Probab=96.99  E-value=0.00069  Score=55.05  Aligned_cols=72  Identities=11%  Similarity=0.140  Sum_probs=63.7

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|++.+.-.-+++.+.+.-+.||++..-..+.+.    ++||||-+|.+|--.+.|+..+||+-+.+++|.|+.|-
T Consensus       292 i~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~  367 (500)
T KOG0120|consen  292 IFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI  367 (500)
T ss_pred             hhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence            4677777777777788888899999988888876    69999999999999999999999999999999998874

>KOG0115|consensus

Probab=96.91  E-value=0.00088  Score=50.81  Aligned_cols=79  Identities=22%  Similarity=0.249  Sum_probs=67.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCc----eecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEK----HFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~----~~~g~~i~V~~a~   74 (83)
                      .|+|.+++.-.-.|.|.++|+.||+|.+..|.-|.   +-|=++|.|.+--.|.+|.+..+-.    ...|+|.-|++.+
T Consensus        33 ~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~e  112 (275)
T KOG0115|consen   33 ELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPME  112 (275)
T ss_pred             eEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChhh
Confidence            58999999999999999999999999988777765   5789999999999999999988544    4467899999998


Q ss_pred             CCCccc
Q psy11609         75 DVDFEL   80 (83)
Q Consensus        75 g~~~e~   80 (83)
                      -++.++
T Consensus       113 q~~d~~  118 (275)
T KOG0115|consen  113 QPDDND  118 (275)
T ss_pred             ccCCCC
Confidence            777665

>KOG0112|consensus

Probab=96.88  E-value=0.0012  Score=56.76  Aligned_cols=71  Identities=17%  Similarity=0.158  Sum_probs=62.3

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHD   75 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g   75 (83)
                      |+++++..=+-...|..+|..||.|..  |-+++.+-||+|-|++++-|+.|++.|.|.-|+|  ++|+|.++.-
T Consensus       458 ~~sgglg~w~p~~~l~r~fd~fGpir~--Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~  530 (975)
T KOG0112|consen  458 LQSGGLGPWSPVSRLNREFDRFGPIRI--IDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP  530 (975)
T ss_pred             eccCCCCCCChHHHHHHHhhccCccee--eecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence            678888888888889999999999996  4456688899999999999999999999999977  7789988873

>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes

Probab=96.79  E-value=0.0084  Score=36.67  Aligned_cols=57  Identities=11%  Similarity=0.252  Sum_probs=45.5

Q ss_pred             CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609         10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS   71 (83)
Q Consensus        10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~   71 (83)
                      ....-++++...++|+-.. |..   ...|| ||.|.+.+||+++..+.||+.+++..|..+
T Consensus        10 ~~~~v~d~K~~Lr~y~~~~-I~~---d~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M~   66 (66)
T PF11767_consen   10 HGVTVEDFKKRLRKYRWDR-IRD---DRTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQME   66 (66)
T ss_pred             CCccHHHHHHHHhcCCcce-EEe---cCCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEeC
Confidence            3445577899999999655 553   34565 799999999999999999999999988753

This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=96.73  E-value=0.0084  Score=42.92  Aligned_cols=65  Identities=15%  Similarity=0.039  Sum_probs=47.3

Q ss_pred             cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC--CceecCeeeEEEecCCCC
Q psy11609         11 TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH--EKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus        11 ~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n--g~~~~g~~i~V~~a~g~~   77 (83)
                      ...++.|++.|..|+++.+..+.+  +=|=..|.|.++++|..|+..++  +..+.|..+.|-.+|...
T Consensus         6 ~~~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~   72 (184)
T PF04847_consen    6 PDNLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP   72 (184)
T ss_dssp             ---HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred             hhhHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence            456678999999999998776655  66668899999999999999999  999999999998887443

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG4211|consensus

Probab=96.50  E-value=0.0089  Score=48.71  Aligned_cols=75  Identities=15%  Similarity=0.160  Sum_probs=63.8

Q ss_pred             ecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCccccCC
Q psy11609          7 VVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFELEFR   83 (83)
Q Consensus         7 k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e~e~~   83 (83)
                      .|.-..+.++|.+-|+-.+ |+++++.++.  +.|=|||.|.+.||+++|++ .+.+++..|=|.|=.+.+.+.+-.||
T Consensus        17 GLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~~   93 (510)
T KOG4211|consen   17 GLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVMR   93 (510)
T ss_pred             CCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcccccccc
Confidence            4677889999999999998 8889999884  68899999999999999984 58889999999998887777654443

>KOG2068|consensus

Probab=96.36  E-value=0.0011  Score=51.41  Aligned_cols=70  Identities=11%  Similarity=0.080  Sum_probs=54.0

Q ss_pred             eeeecCCcchhhH-HHH--HhccCCceeEEEEeccCC-------ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          4 FIYVVSDTSLKDG-LYH--EYKKHGKVSWVKIIGQGG-------DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         4 fv~k~~d~~~~d~-L~~--eF~kfG~Itsv~V~~d~~-------~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      |+..++++.-.+. |.+  -|..||.|.+|.+.++.+       -=-++|+|...|||..|+..-+|-..+|+.+.....
T Consensus        81 yvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~g  160 (327)
T KOG2068|consen   81 YVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLG  160 (327)
T ss_pred             hhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhC
Confidence            4555665554444 665  688999999999999762       224899999999999999999999999988654443

>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN)

Probab=96.14  E-value=0.038  Score=35.74  Aligned_cols=52  Identities=15%  Similarity=0.241  Sum_probs=38.5

Q ss_pred             eeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609          4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH   59 (83)
Q Consensus         4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n   59 (83)
                      |...-..+=-..+|.+.|+.||.|.=-+|    ++-.|||...+.+.|+.|+..++
T Consensus        12 FhltFPkeWK~~DI~qlFspfG~I~VsWi----~dTSAfV~l~~r~~~~~v~~~~~   63 (87)
T PF08675_consen   12 FHLTFPKEWKTSDIYQLFSPFGQIYVSWI----NDTSAFVALHNRDQAKVVMNTLK   63 (87)
T ss_dssp             EEEE--TT--HHHHHHHCCCCCCEEEEEE----CTTEEEEEECCCHHHHHHHHHHT
T ss_pred             EEEeCchHhhhhhHHHHhccCCcEEEEEE----cCCcEEEEeecHHHHHHHHHHhc
Confidence            33444444445679999999999994455    56689999999999999998775

; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.

>KOG1190|consensus

Probab=95.69  E-value=0.02  Score=46.21  Aligned_cols=71  Identities=18%  Similarity=0.177  Sum_probs=54.1

Q ss_pred             eeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec--CeeeEEEecC
Q psy11609          4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF--GCKIDVSPYH   74 (83)
Q Consensus         4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~--g~~i~V~~a~   74 (83)
                      ++........=|.|...|++||.|-++.-.--...==|+|.|.+++-|.-|..+++|+-|.  -|+++++...
T Consensus       154 iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sk  226 (492)
T KOG1190|consen  154 IIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSK  226 (492)
T ss_pred             EeccceeeeEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhh
Confidence            3444445555677999999999998665544334445999999999999999999999883  3788877654

>KOG0128|consensus

Probab=95.55  E-value=0.0015  Score=55.81  Aligned_cols=64  Identities=22%  Similarity=0.330  Sum_probs=54.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEec----cCCceEEEEEeCCchHHHHHHhhcCCceecCe
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG----QGGDRYGLVCFKKADDAEKAILGSHEKHFFGC   66 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~----d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~   66 (83)
                      |.||..++...-+.+|.+.|+.+|.+..+.|..    ..-+|+|||.|..|++|..|+ +++.++++|+
T Consensus       669 ~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV-~f~d~~~~gK  736 (881)
T KOG0128|consen  669 KIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAV-AFRDSCFFGK  736 (881)
T ss_pred             HHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhh-hhhhhhhhhh
Confidence            468888888888999999999999999888772    124899999999999999998 7788888884

>KOG0128|consensus

Probab=94.96  E-value=0.014  Score=50.20  Aligned_cols=73  Identities=14%  Similarity=0.062  Sum_probs=63.8

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      +.||+.++...-+++.|+..++++|+++++.++--.   ++|-|+|-|.++-+|.++.-.+.+..+.-.-+.|+..
T Consensus       737 ~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vs  812 (881)
T KOG0128|consen  737 ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVS  812 (881)
T ss_pred             hhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCcccccc
Confidence            357899999999999999999999999999765533   7999999999999999999999988887777777763

>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins []

Probab=94.94  E-value=0.078  Score=32.15  Aligned_cols=55  Identities=18%  Similarity=0.193  Sum_probs=30.9

Q ss_pred             hhHHHHHhccCCcee-----EEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609         14 KDGLYHEYKKHGKVS-----WVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus        14 ~d~L~~eF~kfG~It-----sv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      ..+|-..+.+-+.|.     ++.|    -+.|+||.-... .|+++++.+++..+.|+++.|++|
T Consensus        15 ~~~iv~~i~~~~gi~~~~IG~I~I----~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A   74 (74)
T PF03880_consen   15 PRDIVGAICNEAGIPGRDIGRIDI----FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA   74 (74)
T ss_dssp             HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred             HHHHHHHHHhccCCCHHhEEEEEE----eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence            333555554444343     4445    456999998765 599999999999999999999986

; PDB: 2G0C_A 3MOJ_B.

>KOG4676|consensus

Probab=94.49  E-value=0.071  Score=42.99  Aligned_cols=78  Identities=18%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      |=|.+++....+|-++..|.-.|+|-.+.++...       ..+.+||-|-++.-+.-| +++-...|-+|-|.|-++.-
T Consensus        10 Iqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p~~~   88 (479)
T KOG4676|consen   10 IQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRPYGD   88 (479)
T ss_pred             eeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEecCC
Confidence            4567788888899999999999999999999843       389999999999988888 57777888899999999886


Q ss_pred             CCcccc
Q psy11609         76 VDFELE   81 (83)
Q Consensus        76 ~~~e~e   81 (83)
                      +.-+++
T Consensus        89 ~~~p~r   94 (479)
T KOG4676|consen   89 EVIPDR   94 (479)
T ss_pred             CCCccH
Confidence            555554

>KOG4285|consensus

Probab=94.24  E-value=0.077  Score=41.46  Aligned_cols=50  Identities=12%  Similarity=0.153  Sum_probs=40.1

Q ss_pred             HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609         17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus        17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      +-.+|++||.|-+..  .....-+-.|-|++--+|++|+ ..||++|+|--+.
T Consensus       213 vL~~F~~cG~Vvkhv--~~~ngNwMhirYssr~~A~KAL-skng~ii~g~vmi  262 (350)
T KOG4285|consen  213 VLNLFSRCGEVVKHV--TPSNGNWMHIRYSSRTHAQKAL-SKNGTIIDGDVMI  262 (350)
T ss_pred             HHHHHHhhCeeeeee--cCCCCceEEEEecchhHHHHhh-hhcCeeeccceEE
Confidence            667999999997443  3345559999999999999999 5599999886554

>KOG1855|consensus

Probab=94.04  E-value=0.054  Score=43.88  Aligned_cols=59  Identities=15%  Similarity=0.163  Sum_probs=49.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---------C--------ceEEEEEeCCchHHHHHHhhcCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---------G--------DRYGLVCFKKADDAEKAILGSHE   60 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---------~--------~g~afV~F~~pEdA~~A~~~~ng   60 (83)
                      ||-+-.|..|..-+-|...|+.+|.|.+|+|.+-+         +        +--|+|.|...+-|.+|.+-||-
T Consensus       233 tivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~  308 (484)
T KOG1855|consen  233 TIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP  308 (484)
T ss_pred             eEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence            56677788888888899999999999999999862         1        34689999999999999887743

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=93.44  E-value=0.26  Score=35.03  Aligned_cols=54  Identities=20%  Similarity=0.231  Sum_probs=43.9

Q ss_pred             HHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609         17 LYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus        17 L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +.+.-+.||+|.||-..+   +..|.|.|++...|=+|+.+..- ..-|.-+++.-.|
T Consensus       107 V~~~Ls~fGpI~SVT~cG---rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWqq  160 (166)
T PF15023_consen  107 VIQRLSVFGPIQSVTLCG---RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQQ  160 (166)
T ss_pred             HHHHHHhcCCcceeeecC---CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeeccc
Confidence            667889999999999876   66899999999999999988664 5566667765444

>KOG2135|consensus

Probab=93.37  E-value=0.046  Score=44.69  Aligned_cols=58  Identities=17%  Similarity=0.163  Sum_probs=49.4

Q ss_pred             hhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609         14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus        14 ~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      -.+|..+|.+||+|-.|.|-+.  .--|.|+|.+--||-+|. +..|-.|.++.|+|.-..
T Consensus       387 ~a~ln~hfA~fG~i~n~qv~~~--~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whn  444 (526)
T KOG2135|consen  387 IADLNPHFAQFGEIENIQVDYS--SLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHN  444 (526)
T ss_pred             HhhhhhhhhhcCccccccccCc--hhhheeeeeccccccchh-ccccceecCceeEEEEec
Confidence            3568899999999999998663  557999999999998886 779999999999986544

>KOG4206|consensus

Probab=93.01  E-value=0.52  Score=35.05  Aligned_cols=71  Identities=11%  Similarity=0.076  Sum_probs=54.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec-CeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF-GCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~-g~~i~V~~a   73 (83)
                      +||+..+..++..+-|...|..|.=-..|+. ...-.+.|||.|.+.-.|.-|.+++.|-.+- .-++.|..+
T Consensus       148 ilf~~niP~es~~e~l~~lf~qf~g~keir~-i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a  219 (221)
T KOG4206|consen  148 ILFLTNIPSESESEMLSDLFEQFPGFKEIRL-IPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA  219 (221)
T ss_pred             EEEEecCCcchhHHHHHHHHhhCcccceeEe-ccCCCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence            6899999999888877666666655554444 3345789999999999999999999997764 667766654

>KOG4307|consensus

Probab=92.69  E-value=0.35  Score=41.67  Aligned_cols=64  Identities=8%  Similarity=0.039  Sum_probs=49.2

Q ss_pred             CCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609          9 SDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP   72 (83)
Q Consensus         9 ~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~   72 (83)
                      ..+..=+++-+-|.-|=.+-.-.+.+..    +.|=+-|.|+++|||+.|...++++-|+.+.+++.+
T Consensus       876 Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i  943 (944)
T KOG4307|consen  876 PFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI  943 (944)
T ss_pred             CccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence            3455556666778888655433333332    478899999999999999999999999999999865

>KOG2193|consensus

Probab=92.35  E-value=0.12  Score=42.24  Aligned_cols=66  Identities=26%  Similarity=0.248  Sum_probs=56.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCc-eecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEK-HFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~-~~~g~~i~V~~a   73 (83)
                      .||++.|+......+|...|..-      ++....    ..|||||...+..-|.+|++..+|+ .+-|+++.|++.
T Consensus         3 klyignL~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s   73 (584)
T KOG2193|consen    3 KLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS   73 (584)
T ss_pred             cccccccCCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch
Confidence            58999999999999999998754      333333    4899999999999999999999997 689999998764

>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []

Probab=92.31  E-value=0.39  Score=31.81  Aligned_cols=53  Identities=19%  Similarity=0.182  Sum_probs=39.8

Q ss_pred             hhhHHHHHhccC-CceeEEEEeccC-C-ceEEEEEeCCchHHHHHHhhcCCceecC
Q psy11609         13 LKDGLYHEYKKH-GKVSWVKIIGQG-G-DRYGLVCFKKADDAEKAILGSHEKHFFG   65 (83)
Q Consensus        13 ~~d~L~~eF~kf-G~Itsv~V~~d~-~-~g~afV~F~~pEdA~~A~~~~ng~~~~g   65 (83)
                      .-+.|..--+.+ ..|+.++|++|. + +=-+++.|+++++|++=..+-||+-|..
T Consensus        26 ~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns   81 (110)
T PF07576_consen   26 PSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS   81 (110)
T ss_pred             cHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence            334454333333 568889999987 3 4468889999999999999999998865

These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.

>KOG4210|consensus

Probab=92.15  E-value=0.066  Score=40.52  Aligned_cols=73  Identities=14%  Similarity=-0.053  Sum_probs=56.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEec----cCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG----QGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~----d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      |+|+++++...=+...-..+.++|..-.+....    +.++|++++.|...+.+..|+..+-.+.++++++.-.+..
T Consensus        90 ~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~  166 (285)
T KOG4210|consen   90 TFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT  166 (285)
T ss_pred             cccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence            578888887776666778899999766565554    2379999999999999999997666568888887765554

>KOG4211|consensus

Probab=91.86  E-value=0.36  Score=39.63  Aligned_cols=64  Identities=14%  Similarity=0.028  Sum_probs=46.8

Q ss_pred             ecCCcchhhHHHHHhccCCceeEEE-EeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609          7 VVSDTSLKDGLYHEYKKHGKVSWVK-IIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS   71 (83)
Q Consensus         7 k~~d~~~~d~L~~eF~kfG~Itsv~-V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~   71 (83)
                      .|.....++++.+-|+--=.|+..- +..|.   +-|=|||+|+++|.|++|+.. |.+.|.-|=|.|-
T Consensus       110 GLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF  177 (510)
T KOG4211|consen  110 GLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVF  177 (510)
T ss_pred             CCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEee
Confidence            4678889999999999776666522 22232   688999999999999999976 4455555555553

>KOG0129|consensus

Probab=91.01  E-value=0.53  Score=38.76  Aligned_cols=72  Identities=13%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEec-------cCCce---EEEEEeCCchHHHHHHh---hcCCceec-----
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG-------QGGDR---YGLVCFKKADDAEKAIL---GSHEKHFF-----   64 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~-------d~~~g---~afV~F~~pEdA~~A~~---~~ng~~~~-----   64 (83)
                      +|||.++.|..++.|..-|..||.+. |.=.+       .+++|   |+|.-|++......-+.   .--+++++     
T Consensus       262 VFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf~vss~  340 (520)
T KOG0129|consen  262 VFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYFKVSSP  340 (520)
T ss_pred             eeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEEEEecC
Confidence            79999999999999999999999987 54432       22466   99999999887754433   33445544     


Q ss_pred             ---CeeeEEEecCC
Q psy11609         65 ---GCKIDVSPYHD   75 (83)
Q Consensus        65 ---g~~i~V~~a~g   75 (83)
                         .++++|-+|--
T Consensus       341 ~~k~k~VQIrPW~l  354 (520)
T KOG0129|consen  341 TIKDKEVQIRPWVL  354 (520)
T ss_pred             cccccceeEEeeEe
Confidence               45566766653

>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length

Probab=90.63  E-value=0.27  Score=36.40  Aligned_cols=35  Identities=26%  Similarity=0.223  Sum_probs=27.5

Q ss_pred             EEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609         41 GLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus        41 afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      |||+|+++.+|..|.+......-  .++.|..|..|+
T Consensus         1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~APeP~   35 (325)
T PF02714_consen    1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAPEPD   35 (325)
T ss_pred             CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCCCcc
Confidence            79999999999999986655443  556777777665

; GO: 0016020 membrane

>KOG4307|consensus

Probab=89.17  E-value=0.3  Score=42.02  Aligned_cols=72  Identities=11%  Similarity=-0.016  Sum_probs=61.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeE-EEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSW-VKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Its-v~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      .|||-.|...+.....-.-|++--.|.+ +.+.+-+   -++.|||.|.+|+++..|.....-..+.-+.|+|...
T Consensus       436 ~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si  511 (944)
T KOG4307|consen  436 ALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI  511 (944)
T ss_pred             eEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence            5889999999999999999998877776 6666644   3889999999999999999888888889999999764

>KOG0129|consensus

Probab=88.15  E-value=1.4  Score=36.41  Aligned_cols=57  Identities=21%  Similarity=0.164  Sum_probs=50.4

Q ss_pred             eEeeeecCCcchhhHHHHHhc-cCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYK-KHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGS   58 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~-kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~   58 (83)
                      |+|||.+.--..-++|-..+. -||-|.=|-|=-|+    ++|.|=|+|++..-=-+|+.+-
T Consensus       372 TVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar  433 (520)
T KOG0129|consen  372 TVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR  433 (520)
T ss_pred             eEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence            899999999999999999999 89999877776665    6999999999999888888764

>KOG4574|consensus

Probab=87.86  E-value=0.29  Score=42.63  Aligned_cols=62  Identities=19%  Similarity=0.108  Sum_probs=52.2

Q ss_pred             cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee--cCeeeEEEecC
Q psy11609         11 TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF--FGCKIDVSPYH   74 (83)
Q Consensus        11 ~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~--~g~~i~V~~a~   74 (83)
                      ....-.|--.|++||.|.|.|-.++  --.|.|.|..-|.|-.|++++.|+.+  -|-|.+|..|.
T Consensus       309 ~~tSssL~~l~s~yg~v~s~wtlr~--~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak  372 (1007)
T KOG4574|consen  309 NLTSSSLATLCSDYGSVASAWTLRD--LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK  372 (1007)
T ss_pred             cchHHHHHHHHHhhcchhhheeccc--ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence            3344458889999999999997663  45799999999999999999999855  78999998876

>KOG0105|consensus

Probab=87.74  E-value=1.6  Score=32.43  Aligned_cols=66  Identities=14%  Similarity=0.251  Sum_probs=55.4

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee--cCeeeEEE
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF--FGCKIDVS   71 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~--~g~~i~V~   71 (83)
                      +.|..|....-=|+|+++-.+=|+|.=..|.+|   |+|.|.|-+-||.+-|++.+...++  .|...++-
T Consensus       118 VvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yir  185 (241)
T KOG0105|consen  118 VVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIR  185 (241)
T ss_pred             EEEecCCCCCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccCcCcEeeEE
Confidence            567888888888999999999999998888775   4999999999999999999988766  44444433

>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function

Probab=86.13  E-value=4.1  Score=24.57  Aligned_cols=51  Identities=20%  Similarity=0.257  Sum_probs=37.3

Q ss_pred             EeeeecCCcchhhHHHHHhccC----CceeEEEEeccCCceEEEEEeCCchHHHHHHhhc
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKH----GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS   58 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kf----G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~   58 (83)
                      |.+-+ .|+-.-++++.-|+.|    ++.. |.=+.|.   .+=|.|.+++.|.+|+.+|
T Consensus         8 vhirG-vd~lsT~dI~~y~~~y~~~~~~~~-IEWIdDt---ScNvvf~d~~~A~~AL~~L   62 (62)
T PF10309_consen    8 VHIRG-VDELSTDDIKAYFSEYFDEEGPFR-IEWIDDT---SCNVVFKDEETAARALVAL   62 (62)
T ss_pred             EEEEc-CCCCCHHHHHHHHHHhcccCCCce-EEEecCC---cEEEEECCHHHHHHHHHcC
Confidence            34444 3556667788888888    7655 6666654   5779999999999999875

>KOG4660|consensus

Probab=83.99  E-value=0.95  Score=37.55  Aligned_cols=41  Identities=10%  Similarity=0.150  Sum_probs=30.7

Q ss_pred             CceEEEEEeCCchHHHHHHhhcCCce---ecC---eeeEEEecCCCC
Q psy11609         37 GDRYGLVCFKKADDAEKAILGSHEKH---FFG---CKIDVSPYHDVD   77 (83)
Q Consensus        37 ~~g~afV~F~~pEdA~~A~~~~ng~~---~~g---~~i~V~~a~g~~   77 (83)
                      .-|||||.|.+|+.+..+..+-||+-   |.+   ++|-.+..||++
T Consensus       430 NvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk~  476 (549)
T KOG4660|consen  430 NVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGKE  476 (549)
T ss_pred             ccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhchH
Confidence            47999999999999999999999962   333   334445556654

>KOG2253|consensus

Probab=80.21  E-value=0.76  Score=38.87  Aligned_cols=67  Identities=18%  Similarity=-0.016  Sum_probs=60.6

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP   72 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~   72 (83)
                      .|+||++.++.+-.+.+...-.++|-|-|++...     |||-.|..++-+-+|++-.+-..++|..+.+-.
T Consensus        41 ~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~  107 (668)
T KOG2253|consen   41 DTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV  107 (668)
T ss_pred             ceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence            3899999999999998999999999999999876     999999999999999999998888888887655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-07
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	7e-07
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	9e-07
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	1e-06
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	1e-05
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	1e-05
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	2e-05
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	2e-05
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	2e-05
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	2e-05
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	2e-05
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	3e-05
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	3e-05
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	4e-05
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	4e-05
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	4e-05
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	5e-05
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	6e-05
1x4e_A	85	RNA binding motif, single-stranded interacting pro	7e-05
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	7e-05
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	7e-05
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	7e-05
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	8e-05
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	8e-05
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	8e-05
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	1e-04
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	1e-04
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	1e-04
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	1e-04
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	2e-04
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	2e-04
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	2e-04
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	2e-04
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	2e-04
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	2e-04
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	2e-04
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	2e-04
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	2e-04
1x5o_A	114	RNA binding motif, single-stranded interacting pro	3e-04
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	3e-04
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	3e-04
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	3e-04
1x5p_A	97	Negative elongation factor E; structure genomics,	3e-04
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	3e-04
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	4e-04
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	4e-04
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	4e-04
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	5e-04
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	5e-04
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	6e-04
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	8e-04
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	9e-04

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 46.0 bits (108), Expect = 1e-07
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 5  IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-YGLVCFKKADDAEKAILG 57
          IY+      +    LK  LY  + + G++  + +      R    V FK+   A  A+  
Sbjct: 12 IYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 71

Query: 58 SHEKHFFGCKIDVS 71
               F+   + + 
Sbjct: 72 MQGFPFYDKPMRIQ 85

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ... Length = 97

 Score = 42.2 bits (100), Expect = 7e-07
 Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 7/74 (9%)

Query: 5  IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-YGLVCFKKADDAEKAILG 57
          IY+      +    LK  L+  + + G++  + +      R    V FK+   A  A+  
Sbjct: 11 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 70

Query: 58 SHEKHFFGCKIDVS 71
               F+   + + 
Sbjct: 71 MQGFPFYDKPMRIQ 84

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A Length = 103

 Score = 41.9 bits (99), Expect = 9e-07
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 14/73 (19%)

Query: 5  IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
          ++V      V++  L+      + + GK+  VK +      Y  + F + D A KA+   
Sbjct: 14 LFVRNLANTVTEEILEK----AFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEM 65

Query: 59 HEKHFFGCKIDVS 71
          + K   G  I++ 
Sbjct: 66 NGKDLEGENIEIV 78

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens} Length = 127

 Score = 41.8 bits (98), Expect = 1e-06
 Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 7/74 (9%)

Query: 5   IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-YGLVCFKKADDAEKAILG 57
           + +      V    L+  LY      G +  + +     +     + F   + A+  +  
Sbjct: 32  VLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEA 91

Query: 58  SHEKHFFGCKIDVS 71
                F G  + ++
Sbjct: 92  FQGYPFQGNPLVIT 105

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 97

 Score = 38.7 bits (90), Expect = 1e-05
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 5  IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
          +YV         + LK  L     + G V  +++  QG  R   + +  +  A++A+   
Sbjct: 22 VYVGNLPRDARVSDLKRALR----ELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCL 76

Query: 59 HEKHFFGCKIDVS 71
                   + V+
Sbjct: 77 QGLRLGTDTLRVA 89

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 38.8 bits (91), Expect = 1e-05
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 5  IYV---VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-YGLVCFKKADDAEKAILGSHE 60
          IYV     D   KD +   + K+G +  + +  + G   +  V F+   DAE A+ G   
Sbjct: 25 IYVGNLPPDIRTKD-IEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDG 83

Query: 61 KHFFGCKIDV 70
            + G ++ V
Sbjct: 84 YDYDGYRLRV 93

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_A 2f9j_A 2fho_B Length = 115

 Score = 38.9 bits (91), Expect = 2e-05
 Identities = 10/62 (16%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 14 KDGLYHEYKKHGKVSWVKIIGQGGDR-YGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72
           + +Y  + K+G +  +++      R    V ++   DA+ A+      +     + V  
Sbjct: 22 AEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81

Query: 73 YH 74
          Y+
Sbjct: 82 YN 83

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A Length = 108

 Score = 38.8 bits (91), Expect = 2e-05
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 5  IYV--VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
          ++V        +  L   +   G +  VKI+  G   +  V F++A+ A KAI   H K 
Sbjct: 34 LFVRPFPLDVQESELNEIFGPFGPMKEVKIL-NG---FAFVEFEEAESAAKAIEEVHGKS 89

Query: 63 FFGCKIDVSP 72
          F    ++V  
Sbjct: 90 FANQPLEVVY 99

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 38.3 bits (90), Expect = 2e-05
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 5  IYV--VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
          +++  +   + +  +   ++++GKV    II      YG V  +    AE AI   H   
Sbjct: 11 LFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYK 66

Query: 63 FFGCKIDV 70
            G  I+V
Sbjct: 67 LHGVNINV 74

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 38.8 bits (91), Expect = 2e-05
 Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 17/79 (21%)

Query: 3  LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR------YGLVCFKKADDAE 52
          +F+    Y V    LK+     +   G V    I+    D+       G V F+++ +A 
Sbjct: 18 VFVANLDYKVGWKKLKE----VFSMAGVVVRADILE---DKDGKSRGIGTVTFEQSIEAV 70

Query: 53 KAILGSHEKHFFGCKIDVS 71
          +AI   + +  F   + V 
Sbjct: 71 QAISMFNGQLLFDRPMHVK 89

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92

 Score = 38.4 bits (90), Expect = 2e-05
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 5  IYV--VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
          ++V  +S T     L  +++++G V    I+      Y  V  ++A+DA +AI G     
Sbjct: 13 LHVGNISPTCTNQELRAKFEEYGPVIECDIV----KDYAFVHMERAEDAVEAIRGLDNTE 68

Query: 63 FFGCKIDV 70
          F G ++ V
Sbjct: 69 FQGKRMHV 76

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A Length = 115

 Score = 38.3 bits (89), Expect = 3e-05
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 6  YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG 65
             S   LKD      ++ G V +  +   G    G+V F + +D   A+       F  
Sbjct: 26 PSGSWQDLKD----HMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 78

Query: 66 CKIDVS 71
           + + +
Sbjct: 79 HEGETA 84

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A Length = 97

 Score = 37.7 bits (88), Expect = 3e-05
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV 70
          K+ L+  +  +G +  + I       +G + F        AI    ++  FG K+ +
Sbjct: 37 KEDLFRIFSPYGHIMQINIKN----AFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens} Length = 110

 Score = 37.8 bits (88), Expect = 4e-05
 Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-------YGLVCFKKADDAEKAI 55
          +    ++D   +  L    +K+G+V  V+I+                V F     A++ +
Sbjct: 9  VTFARLNDNVRETFLKDMCRKYGEVEEVEILL---HPRTRKHLGLARVLFTSTRGAKETV 65

Query: 56 LGSHEKHFFGCKIDVS 71
             H     G  I   
Sbjct: 66 KNLHLTSVMGNIIHAQ 81

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Length = 96

 Score = 37.6 bits (88), Expect = 4e-05
 Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 9/70 (12%)

Query: 5  IYV----VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE 60
          +++    + + S +D L+  +  +G +  + I       +G + F        AI    +
Sbjct: 13 LFIGNLPLKNVSKED-LFRIFSPYGHIMQINIKN----AFGFIQFDNPQSVRDAIECESQ 67

Query: 61 KHFFGCKIDV 70
          +  FG K+ +
Sbjct: 68 EMNFGKKLIL 77

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A Length = 229

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 15  DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72
             L+  +  +G V  VKI+    +   LV     + A+ A+   +     G  I ++ 
Sbjct: 50  QSLFILFGVYGDVQRVKILFNKKE-NALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A Length = 115

 Score = 37.7 bits (88), Expect = 5e-05
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 3   LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-------YGLVCFKKADDAEKAI 55
           LFIY +        L   +   G V   K+     D+       +G V +     A+ AI
Sbjct: 28  LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFI---DKQTNLSKCFGFVSYDNPVSAQAAI 84

Query: 56  LGSHEKHFFGCKIDVS 71
              +       ++ V 
Sbjct: 85  QSMNGFQIGMKRLKVQ 100

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1 Length = 108

 Score = 37.1 bits (86), Expect = 6e-05
 Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 6  YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG 65
             S   LKD      ++ G V +  +   G    G+V F + +D   A+       F  
Sbjct: 25 PSGSWQDLKD----HMREAGDVCYADVYRDG---TGVVEFVRKEDMTYAVRKLDNTKFRS 77

Query: 66 CKIDVS 71
           + + +
Sbjct: 78 HEGETA 83

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 85

 Score = 36.7 bits (86), Expect = 7e-05
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 10/78 (12%)

Query: 1  MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-------YGLVCFKKADDAEK 53
            L+I  +   +    L    + +GK+   K I    D+       YG V F     A+K
Sbjct: 6  SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAIL---DKTTNKCKGYGFVDFDSPSAAQK 62

Query: 54 AILGSHEKHFFGCKIDVS 71
          A+               S
Sbjct: 63 AVTALKASGVQAQMAKQS 80

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 90

 Score = 36.8 bits (86), Expect = 7e-05
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 14/72 (19%)

Query: 5  IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
          I+V       +   L+      +++ G+V    ++      Y  V  +K  DA+ AI   
Sbjct: 12 IFVGNVSAACTSQELRS----LFERRGRVIECDVVK----DYAFVHMEKEADAKAAIAQL 63

Query: 59 HEKHFFGCKIDV 70
          + K   G +I+V
Sbjct: 64 NGKEVKGKRINV 75

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1 Length = 98

 Score = 36.8 bits (86), Expect = 7e-05
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 1  MALFI----YVVSDTSLKDGLYHEYKKHGKVSWVKII----GQGGDR---YGLVCFKKAD 49
            LFI    +  ++ +LK      + K G +    I       G      +G V +KK +
Sbjct: 6  SGLFIKNLNFSTTEETLKG----VFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPE 61

Query: 50 DAEKAILGSHEKHFFGCKIDVS 71
           A+KA+         G K++V 
Sbjct: 62 QAQKALKQLQGHTVDGHKLEVR 83

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 103

 Score = 36.9 bits (86), Expect = 7e-05
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 18/77 (23%)

Query: 5  IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-----YGLVCFKKADDAEK 53
          ++V        D  L+      + + GK+  V+II    +      +G V F+ + DA++
Sbjct: 18 LHVSNIPFRFRDPDLRQ----MFGQFGKILDVEIIF---NERGSKGFGFVTFENSADADR 70

Query: 54 AILGSHEKHFFGCKIDV 70
          A    H     G KI+V
Sbjct: 71 AREKLHGTVVEGRKIEV 87

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 36.9 bits (86), Expect = 8e-05
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 12/75 (16%)

Query: 5   IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIG-QGGDR-YGLVCFKKADDAEKAIL 56
           ++V        D  L+      + + GK+  V+II  + G + +G V F+ + DA++A  
Sbjct: 32  LHVSNIPFRFRDPDLRQ----MFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRARE 87

Query: 57  GSHEKHFFGCKIDVS 71
             H     G KI+V+
Sbjct: 88  KLHGTVVEGRKIEVN 102

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus} Length = 124

 Score = 37.0 bits (86), Expect = 8e-05
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 13/76 (17%)

Query: 5   IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR---YGLVCFKKADDAEKAI 55
           + V      VSD  +++     + + G +    +      R      V F++  DA KA+
Sbjct: 38  LLVSNLDFGVSDADIQE----LFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAM 93

Query: 56  LGSHEKHFFGCKIDVS 71
                    G  +D+ 
Sbjct: 94  KQYKGVPLDGRPMDIQ 109

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A Length = 115

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 15 DGLYHEYKKHGKVSWVKIIG-QGGDR-YGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72
            LY  +   G +   K++  + G + YG V F+  + AE+AI   +       K+ V  
Sbjct: 20 KALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79

Query: 73 Y 73
          +
Sbjct: 80 F 80

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Length = 110

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71
          K  +   + K+G+V+   +  +G   Y  V +     A  A+LG + +   G  +D++
Sbjct: 42 KSDVETIFSKYGRVAGCSVH-KG---YAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster} Length = 118

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-------YGLVCFKKADDAEKAI 55
          LFIY +        L   +   G V   K+     D+       +G V F   D A+ AI
Sbjct: 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFI---DKQTSLSKCFGFVSFDNPDSAQVAI 99

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 99

 Score = 36.1 bits (84), Expect = 1e-04
 Identities = 13/70 (18%), Positives = 31/70 (44%), Gaps = 6/70 (8%)

Query: 5  IYV--VSDTSLKDGLYHEYKKHGKVSWVKI-IGQGGDRYGLVCFKKADDAEKAILGSHEK 61
          +YV  +  ++ ++ +  E+      +  ++   +    Y  V F   +DA +A+   + K
Sbjct: 18 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRD---YAFVHFSNREDAVEAMKALNGK 74

Query: 62 HFFGCKIDVS 71
             G  I+V+
Sbjct: 75 VLDGSPIEVT 84

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A Length = 105

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKII--GQGGDR-YGLVCFKKADDAEKAILGSH 59
          LF+ +++    ++ +   ++  G +    ++    G  +    V F    +A+ AI   H
Sbjct: 18 LFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALH 77

Query: 60 EKHFF 64
               
Sbjct: 78 GSQTM 82

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGD--RYGLVCFKKADDAEKAILGSHE 60
          L++  + D    + L   +   G ++  K++ +GG    +G VCF   ++A KA+   + 
Sbjct: 18 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 77

Query: 61 KHFFGCKIDVS 71
          +      + V+
Sbjct: 78 RIVATKPLYVA 88

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens} Length = 116

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 17/78 (21%)

Query: 3  LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR------YGLVCFKKADDAE 52
          LFI       ++  LK      + KHG +S V +I    DR      +  + F+   DA+
Sbjct: 10 LFIGGLNRETNEKMLKA----VFGKHGPISEVLLIK---DRTSKSRGFAFITFENPADAK 62

Query: 53 KAILGSHEKHFFGCKIDV 70
           A    + K   G  I V
Sbjct: 63 NAAKDMNGKSLHGKAIKV 80

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens} Length = 101

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 5  IYV--VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
          +YV  +   + K  L   +  +G +  V I       +  V F+   DAE A+ G   K 
Sbjct: 3  VYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPP-GFAFVEFEDPRDAEDAVRGLDGKV 61

Query: 63 FFGCKIDV 70
            G ++ V
Sbjct: 62 ICGSRVRV 69

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E Length = 284

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 10/73 (13%), Positives = 26/73 (35%), Gaps = 6/73 (8%)

Query: 5   IYV---VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR---YGLVCFKKADDAEKAILGS 58
           + V       +  D L          ++ ++      +   + ++ ++ A+ AE+A   +
Sbjct: 187 LCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQA 246

Query: 59  HEKHFFGCKIDVS 71
                 G  + VS
Sbjct: 247 DGLSLGGSHLRVS 259

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 Length = 198

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72
             L+  +  +G V  VKI+    +   LV     + A+ A+   +     G  I ++ 
Sbjct: 18 PQSLFILFGVYGDVQRVKILFNKKE-NALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A Length = 107

 Score = 35.7 bits (83), Expect = 2e-04
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 19/79 (24%)

Query: 5   IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR------YGLVCFKKADDAE 52
           + V      VSD  +++     + + G +    +     DR         V F++  DA 
Sbjct: 32  LLVSNLDFGVSDADIQE----LFAEFGTLKKAAVHY---DRSGRSLGTADVHFERKADAL 84

Query: 53  KAILGSHEKHFFGCKIDVS 71
           KA+   +     G  +++ 
Sbjct: 85  KAMKQYNGVPLDGRPMNIQ 103

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 96

 Score = 35.7 bits (82), Expect = 2e-04
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 6  YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFF 64
          Y +S   L+  L   + +HGKV  V++          +V  +   DA  A+   H     
Sbjct: 19 YRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG 78

Query: 65 GCKIDVS 71
            KI VS
Sbjct: 79 SKKILVS 85

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 35.5 bits (82), Expect = 2e-04
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGD-RYGLVCFKKADDAEKAILGSHEK 61
          L I  +      + L     ++G V   + +    +     V +   D A +A+   +  
Sbjct: 18 LQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGF 77

Query: 62 HFFGCKIDVS 71
                + V+
Sbjct: 78 QLENFTLKVA 87

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 114

 Score = 35.7 bits (83), Expect = 3e-04
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 3   LFIYVVSDTSLKDGLYHEYKKHGKVSWVKII--GQGGDR-YGLVCFKKADDAEKAILGSH 59
           L+I  +  +  +  L +  K  G+V   +I+    G  R  G    +  +  E  I   +
Sbjct: 28  LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFN 87

Query: 60  EKHFFGCKIDVSP 72
            K         +P
Sbjct: 88  GKFIKTPPGVSAP 100

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens} Length = 95

 Score = 35.3 bits (82), Expect = 3e-04
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 11/75 (14%)

Query: 5  IYV--VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR------YGLVCFKKADDAEKAIL 56
          ++V  +     ++ LY  + + G ++ V I     DR      +G VCFK  +    AI 
Sbjct: 19 VFVGNLEARVREEILYELFLQAGPLTKVTICK---DREGKPKSFGFVCFKHPESVSYAIA 75

Query: 57 GSHEKHFFGCKIDVS 71
            +    +G  I+VS
Sbjct: 76 LLNGIRLYGRPINVS 90

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} Length = 83

 Score = 35.2 bits (82), Expect = 3e-04
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 20/80 (25%)

Query: 5  IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-------YGLVCFKKADDA 51
          ++V      V D +L++     +K         ++    D        YG V F   DDA
Sbjct: 4  LFVGDLNVNVDDETLRN----AFKDFPSYLSGHVMW---DMQTGSSRGYGFVSFTSQDDA 56

Query: 52 EKAILGSHEKHFFGCKIDVS 71
          + A+     +   G  + ++
Sbjct: 57 QNAMDSMQGQDLNGRPLRIN 76

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP} Length = 158

 Score = 36.0 bits (83), Expect = 3e-04
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 5   IYV--VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRY-------GLVCFKKADDAEKAI 55
           + V  ++  +  D L   ++K+G+V  V I     DRY         V F    DAE A+
Sbjct: 73  LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPR---DRYTKESRGFAFVRFHDKRDAEDAM 129

Query: 56  LGSHEKHFFGCKIDV 70
                    G ++ V
Sbjct: 130 DAMDGAVLDGRELRV 144

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 97

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 5  IYV----VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE 60
          +YV    ++ T L+      +   G +  + +          V ++K + A++A+   + 
Sbjct: 18 LYVYGEDMTPTLLRG----AFSPFGNIIDLSMDPPRN--CAFVTYEKMESADQAVAELNG 71

Query: 61 KHFFGCKIDVS 71
                ++ V+
Sbjct: 72 TQVESVQLKVN 82

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A Length = 92

 Score = 34.9 bits (81), Expect = 3e-04
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 12/75 (16%)

Query: 3  LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR---YGLVCFKKADDAEKAI 55
          +F+    +  +   LKD    ++ + G V +  I  + G +    G+V F+  + AE+A 
Sbjct: 11 IFVRNLPFDFTWKMLKD----KFNECGHVLYADIKMENG-KSKGCGVVKFESPEVAERAC 65

Query: 56 LGSHEKHFFGCKIDV 70
             +     G +IDV
Sbjct: 66 RMMNGMKLSGREIDV 80

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A Length = 111

 Score = 35.2 bits (81), Expect = 4e-04
 Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 6  YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG 65
             S   LKD      +   + ++  +  +  D  G + F   +   +A+   +   F G
Sbjct: 38 EGCSWQDLKD---LARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG 94

Query: 66 CKIDV 70
            I V
Sbjct: 95 SVITV 99

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Length = 130

 Score = 35.4 bits (81), Expect = 4e-04
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 15  DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF-GC---KIDV 70
           D L+  + K G V  +    +      L+ +     A+ A L    ++ +  C   +ID 
Sbjct: 43  DVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102

Query: 71  SPYHDVDFE 79
           S    ++ +
Sbjct: 103 SKLTSLNVK 111

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Length = 164

 Score = 35.8 bits (82), Expect = 4e-04
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 15  DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF--GCKIDVS 71
           D L+  + K G V  +    +      L+ +     A+ A L    ++ +   C + + 
Sbjct: 61  DVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A Length = 115

 Score = 35.0 bits (81), Expect = 5e-04
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 20/64 (31%)

Query: 5  IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-------YGLVCFKKADDA 51
          ++V      ++   +K      +   G++S  +++    D        YG V F    DA
Sbjct: 18 VFVGDLSPEITTEDIKA----AFAPFGRISDARVVK---DMATGKSKGYGFVSFFNKWDA 70

Query: 52 EKAI 55
          E AI
Sbjct: 71 ENAI 74

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus} Length = 177

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 13/76 (17%)

Query: 5   IYV------VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR---YGLVCFKKADDAEKAI 55
           + V      VSD  +++     + + G +    +      R      V F++  DA KA+
Sbjct: 91  LLVSNLDFGVSDADIQE----LFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAM 146

Query: 56  LGSHEKHFFGCKIDVS 71
                    G  +D+ 
Sbjct: 147 KQYKGVPLDGRPMDIQ 162

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 Length = 97

 Score = 34.5 bits (80), Expect = 6e-04
 Identities = 15/70 (21%), Positives = 27/70 (38%), Gaps = 7/70 (10%)

Query: 9  SDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKI 68
           +TSL   L  E+ + G +  +  +   GD +  + ++  D A+ A          G   
Sbjct: 27 PNTSLAA-LAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83

Query: 69 DVSPYHDVDF 78
           +     VDF
Sbjct: 84 RLR----VDF 89

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 109

 Score = 34.2 bits (79), Expect = 8e-04
 Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71
            +   +   G++  +++  + G  Y  V F   + A  AI+  +     G  +   
Sbjct: 40 QLMRQTFSPFGQIMEIRVFPEKG--YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 102

 Score = 34.1 bits (79), Expect = 9e-04
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 18/79 (22%)

Query: 3  LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-------YGLVCFKKADDA 51
          LF+    +  ++ SL+      + K+G++S V ++    DR       +G V F+  DDA
Sbjct: 15 LFVGGLSFDTNEQSLEQ----VFSKYGQISEVVVVK---DRETQRSRGFGFVTFENIDDA 67

Query: 52 EKAILGSHEKHFFGCKIDV 70
          + A++  + K   G +I V
Sbjct: 68 KDAMMAMNGKSVDGRQIRV 86

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	83
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	99.89
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	99.88
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	99.88
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.87
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	99.86
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	99.86
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	99.86
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	99.85
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	99.85
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	99.85
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	99.85
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	99.85
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	99.85
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	99.85
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	99.85
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	99.84
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	99.84
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.84
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	99.84
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	99.84
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	99.84
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	99.84
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	99.84
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	99.84
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	99.84
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	99.84
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	99.84
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	99.84
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	99.84
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	99.84
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	99.84
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	99.83
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	99.83
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	99.83
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	99.83
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	99.83
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	99.83
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	99.83
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	99.83
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	99.83
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	99.83
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	99.83
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.83
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	99.83
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	99.83
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	99.83
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	99.83
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	99.83
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	99.83
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	99.83
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	99.83
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	99.83
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	99.83
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	99.82
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	99.82
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	99.82
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.82
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	99.82
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	99.82
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	99.82
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	99.82
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	99.82
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	99.82
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	99.82
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	99.82
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	99.82
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	99.82
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	99.82
2div_A	99	TRNA selenocysteine associated protein; structural	99.82
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	99.82
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	99.82
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	99.82
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	99.82
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	99.82
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	99.82
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	99.82
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	99.82
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	99.81
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	99.81
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	99.81
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	99.81
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	99.81
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	99.81
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	99.81
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.81
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	99.81
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	99.81
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	99.81
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	99.81
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	99.81
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	99.81
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	99.81
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.81
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	99.81
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	99.81
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	99.81
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	99.81
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.81
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	99.81
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.81
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	99.81
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	99.81
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	99.81
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	99.81
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	99.8
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.8
1x5p_A	97	Negative elongation factor E; structure genomics,	99.8
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	99.8
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.8
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	99.8
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	99.8
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	99.8
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	99.8
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	99.8
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	99.8
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	99.8
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	99.79
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.79
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	99.79
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	99.79
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	99.79
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.79
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	99.79
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	99.79
2dis_A	109	Unnamed protein product; structural genomics, RRM	99.79
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.79
1x5o_A	114	RNA binding motif, single-stranded interacting pro	99.79
1x4e_A	85	RNA binding motif, single-stranded interacting pro	99.79
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	99.79
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	99.79
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	99.79
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	99.79
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	99.79
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.79
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	99.78
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	99.78
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	99.78
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	99.78
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	99.78
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	99.78
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	99.78
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	99.78
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	99.78
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	99.78
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	99.78
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	99.78
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	99.78
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.78
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	99.78
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	99.77
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	99.77
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.77
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	99.77
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	99.77
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	99.77
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	99.77
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.77
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.77
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.76
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	99.76
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	99.76
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.76
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	99.76
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.75
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	99.75
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	99.75
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	99.61
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	99.75
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	99.74
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	99.74
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.74
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	99.74
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	99.74
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	99.74
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	99.74
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	99.73
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.73
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.73
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.72
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.72
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.72
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	99.72
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	99.72
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	99.72
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.71
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	99.71
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	99.71
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	99.7
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	99.7
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	99.69
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	99.69
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	99.68
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	99.68
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.68
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	99.68
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	99.67
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	99.66
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.66
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	99.66
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	99.65
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	99.65
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	99.64
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	99.63
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	99.63
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	99.63
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	99.5
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	99.36
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	99.35
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	98.4
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	98.01
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	97.69
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	97.65
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	97.43
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	97.42
3ctr_A	101	Poly(A)-specific ribonuclease PARN; protein-RNA-co	96.8
2dhx_A	104	Poly (ADP-ribose) polymerase family, member 10 var	96.69
1whv_A	100	Poly(A)-specific ribonuclease; RNA recognition mot	96.65
3pq1_A	464	Poly(A) RNA polymerase; nucleotidyl transferase, R	95.51
3d45_A	507	Poly(A)-specific ribonuclease PARN; CAP analogue,	93.47
1uw4_A	91	UPF3X; nonsense mediated mRNA decay protein, RNA-b	93.05
2g0c_A	76	ATP-dependent RNA helicase DBPA; RNA recognition m	90.92
2l08_A	97	Regulator of nonsense transcripts 3A; NESG, nonsen	83.02

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=99.89  E-value=7e-23  Score=129.20  Aligned_cols=73  Identities=26%  Similarity=0.302  Sum_probs=70.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||+|.++++|++|++.|||..|.|++|.|+.|+
T Consensus        21 ~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak   97 (99)
T 4fxv_A           21 NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR   97 (99)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            79999999999999999999999999999999875    48999999999999999999999999999999999985

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=99.88  E-value=1.5e-22  Score=130.16  Aligned_cols=74  Identities=18%  Similarity=0.118  Sum_probs=71.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||+|.++++|++|++.|||..|.|++|.|+++..
T Consensus         8 ~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~   85 (110)
T 3s8s_A            8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK   85 (110)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            79999999999999999999999999999999876    589999999999999999999999999999999999974

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=99.88  E-value=1.9e-22  Score=129.29  Aligned_cols=74  Identities=22%  Similarity=0.372  Sum_probs=71.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.  ++|||||.|.++|+|++|++.|||..|.|++|.|..|..
T Consensus         7 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~   82 (115)
T 4f25_A            7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS   82 (115)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred             EEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            79999999999999999999999999999999986  589999999999999999999999999999999999874

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=99.87  E-value=4.3e-22  Score=119.20  Aligned_cols=76  Identities=17%  Similarity=0.231  Sum_probs=72.0

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +||||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||.|.++++|++|++.|||..+.|++|.|..++..
T Consensus         2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~   81 (83)
T 3md1_A            2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL   81 (83)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence            489999999999999999999999999999999875    4899999999999999999999999999999999999854

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=99.86  E-value=1.2e-21  Score=118.03  Aligned_cols=75  Identities=20%  Similarity=0.271  Sum_probs=71.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++++.+..+++|++.|++||+|.+|+++.+.     ++|||||.|.++++|++|+..|||..+.|++|.|+.+..+
T Consensus         6 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   85 (88)
T 4a8x_A            6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP   85 (88)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence            79999999999999999999999999999999886     6889999999999999999999999999999999999754

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=99.86  E-value=4.6e-22  Score=125.75  Aligned_cols=73  Identities=14%  Similarity=0.183  Sum_probs=68.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCc--eeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCc----eecCeeeEEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGK--VSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEK----HFFGCKIDVS   71 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~--Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~----~~~g~~i~V~   71 (83)
                      ||||++|+.++.+++|++.|++||.  |.+|+|++|.    ++|||||+|.++++|++|++.|||.    .++||+|.|+
T Consensus        11 tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~   90 (95)
T 2lkz_A           11 TIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVD   90 (95)
T ss_dssp             EEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEE
Confidence            8999999999999999999999995  6789999986    6899999999999999999999997    6999999999


Q ss_pred             ecC
Q psy11609         72 PYH   74 (83)
Q Consensus        72 ~a~   74 (83)
                      .|+
T Consensus        91 ~Ak   93 (95)
T 2lkz_A           91 FAK   93 (95)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            986

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=99.86  E-value=2.1e-22  Score=123.61  Aligned_cols=77  Identities=16%  Similarity=0.214  Sum_probs=67.8

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCC--ceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHG--KVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG--~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +||||++|+.+..+++|++.|++||  +|.+|+|+.+.    ++|||||+|.++++|++|++.|||..+.|++|.|..+.
T Consensus         2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~   81 (90)
T 3p5t_L            2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN   81 (90)
T ss_dssp             --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred             eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence            4899999999999999999999999  99999999985    58999999999999999999999999999999999998


Q ss_pred             CCC
Q psy11609         75 DVD   77 (83)
Q Consensus        75 g~~   77 (83)
                      .+.
T Consensus        82 ~~~   84 (90)
T 3p5t_L           82 KLE   84 (90)
T ss_dssp             ---
T ss_pred             CCc
Confidence            543

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=99.85  E-value=2.8e-21  Score=116.47  Aligned_cols=75  Identities=20%  Similarity=0.233  Sum_probs=70.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||.|.++++|++|++.|||..+.|++|.|..+..+
T Consensus         8 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k   86 (87)
T 3bs9_A            8 HVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK   86 (87)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence            79999999999999999999999999999999875    4899999999999999999999999999999999998753

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=99.85  E-value=2.1e-21  Score=116.57  Aligned_cols=73  Identities=22%  Similarity=0.271  Sum_probs=69.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||.|.++++|++|++.|||..+.|++|.|+.|.
T Consensus         9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak   85 (85)
T 3mdf_A            9 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK   85 (85)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence            79999999999999999999999999999998874    58999999999999999999999999999999999874

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=99.85  E-value=9.8e-22  Score=123.28  Aligned_cols=73  Identities=19%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             eEeeeecCC------cchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecC-eeeEE
Q psy11609          2 ALFIYVVSD------TSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFG-CKIDV   70 (83)
Q Consensus         2 ~lfv~k~~d------~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g-~~i~V   70 (83)
                      ||||++|+.      +..+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|++|++.|||..|.| ++|.|
T Consensus         8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V   87 (100)
T 3ns6_A            8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFL   87 (100)
T ss_dssp             EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred             EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEE
Confidence            799999999      99999999999999999999999886    58999999999999999999999999999 99999


Q ss_pred             EecC
Q psy11609         71 SPYH   74 (83)
Q Consensus        71 ~~a~   74 (83)
                      ..|.
T Consensus        88 ~~a~   91 (100)
T 3ns6_A           88 YTMK   91 (100)
T ss_dssp             EESH
T ss_pred             EECc
Confidence            9986

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=99.85  E-value=5.9e-22  Score=122.89  Aligned_cols=75  Identities=13%  Similarity=0.303  Sum_probs=69.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCC-ceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcC-CceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSH-EKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~n-g~~~~g~~i~V~~a~g   75 (83)
                      +|||.+|+.+..+++|++.|++|| +|.+|+|++|.    ++|||||+|.++|+|++|++.++ +..+.|++|.|+.|..
T Consensus         3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~   82 (91)
T 2lxi_A            3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP   82 (91)
T ss_dssp             EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence            799999999999999999999999 89999999875    68999999999999999999885 5679999999999984


Q ss_pred             C
Q psy11609         76 V   76 (83)
Q Consensus        76 ~   76 (83)
                      +
T Consensus        83 ~   83 (91)
T 2lxi_A           83 K   83 (91)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.85  E-value=5.9e-21  Score=121.42  Aligned_cols=76  Identities=18%  Similarity=0.160  Sum_probs=71.5

Q ss_pred             eEeeeecCCcchhhHHH---HHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609          2 ALFIYVVSDTSLKDGLY---HEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS   71 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~---~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~   71 (83)
                      +|||++|+.+..+++|.   +.|++||+|.+|+|+.+.       ++|||||+|.++++|++|+..|||..|.|++|.|.
T Consensus        17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~   96 (111)
T 2cpi_A           17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS   96 (111)
T ss_dssp             CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEE
Confidence            79999999999999999   999999999999999875       35899999999999999999999999999999999


Q ss_pred             ecCCCC
Q psy11609         72 PYHDVD   77 (83)
Q Consensus        72 ~a~g~~   77 (83)
                      .|+...
T Consensus        97 ~a~~k~  102 (111)
T 2cpi_A           97 LGTTKY  102 (111)
T ss_dssp             SCCCCS
T ss_pred             eccccc
Confidence            998654

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=99.85  E-value=2.1e-21  Score=126.18  Aligned_cols=76  Identities=12%  Similarity=0.104  Sum_probs=71.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.++.+++|++.|++|| +|+.|+|+.+.++|||||+|.++|+|++|++.|||..|.|++|.|+.+.++.
T Consensus        30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p  106 (111)
T 2jvr_A           30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP  106 (111)
T ss_dssp             EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence            799999999999999999999999 9999999877799999999999999999999999999999999999998664

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.85  E-value=5.4e-21  Score=118.67  Aligned_cols=75  Identities=20%  Similarity=0.166  Sum_probs=71.0

Q ss_pred             eEeeeecCCcchhhHHH----HHhccCCceeEEEEeccCC-ceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLY----HEYKKHGKVSWVKIIGQGG-DRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~----~eF~kfG~Itsv~V~~d~~-~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|+    +.|++||+|.+|+|+.+.. +|||||+|.++++|++|++.|||..|.|++|.|+.|...
T Consensus        11 ~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~   90 (96)
T 2dgx_A           11 DVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGA   90 (96)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence            79999999999999999    9999999999999998753 899999999999999999999999999999999999854

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.85  E-value=7e-21  Score=118.55  Aligned_cols=77  Identities=18%  Similarity=0.238  Sum_probs=72.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF   78 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~   78 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.  ++|||||.|.++++|++|+..|||..|.|++|.|..+..+..
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~   95 (103)
T 2cqi_A           17 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS   95 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred             EEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence            79999999999999999999999999999999976  589999999999999999999999999999999999986543

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.84  E-value=7.2e-21  Score=117.53  Aligned_cols=76  Identities=22%  Similarity=0.215  Sum_probs=72.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.|..+...+
T Consensus        10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   89 (99)
T 1whw_A           10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK   89 (99)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence            79999999999999999999999999999999876    58999999999999999999999999999999999998554

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.84  E-value=1.7e-20  Score=116.83  Aligned_cols=76  Identities=24%  Similarity=0.256  Sum_probs=72.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.  ++|||||+|.++++|++|+..|||..|.|++|.|..+....
T Consensus        17 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   94 (103)
T 2cq3_A           17 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV   94 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence            79999999999999999999999999999999876  59999999999999999999999999999999999998544

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.84  E-value=9e-21  Score=121.65  Aligned_cols=74  Identities=20%  Similarity=0.207  Sum_probs=64.0

Q ss_pred             eEeeeecC-----CcchhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609          2 ALFIYVVS-----DTSLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS   71 (83)
Q Consensus         2 ~lfv~k~~-----d~~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~   71 (83)
                      +|++.++.     ++.++++|+++|++||+|.+|+|+.++     ++|||||.|.++++|.+|+++|||++|.||+|.|.
T Consensus        10 ~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~   89 (105)
T 2pe8_A           10 VVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKAC   89 (105)
T ss_dssp             EEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred             EEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEE
Confidence            45666554     356889999999999999999999863     58999999999999999999999999999999999


Q ss_pred             ecCC
Q psy11609         72 PYHD   75 (83)
Q Consensus        72 ~a~g   75 (83)
                      .|+.
T Consensus        90 ~a~~   93 (105)
T 2pe8_A           90 FYNL   93 (105)
T ss_dssp             ECCH
T ss_pred             EcCH
Confidence            9974

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1e-20  Score=115.69  Aligned_cols=73  Identities=22%  Similarity=0.326  Sum_probs=69.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||.|.++++|++|++.|||..|.|++|.|+.|.
T Consensus        18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak   94 (94)
T 2e5h_A           18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI   94 (94)
T ss_dssp             SEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence            79999999999999999999999999999999975    48899999999999999999999999999999999874

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=99.84  E-value=9.1e-21  Score=116.06  Aligned_cols=73  Identities=23%  Similarity=0.382  Sum_probs=69.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.   ++|||||.|.++++|++|++.|||..|.|++|.|..+.
T Consensus        18 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   93 (95)
T 2ywk_A           18 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS   93 (95)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence            79999999999999999999999999999999875   48999999999999999999999999999999999886

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=99.84  E-value=8.9e-21  Score=117.02  Aligned_cols=76  Identities=9%  Similarity=0.156  Sum_probs=72.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..|||..+.|++|.|..+..+.
T Consensus         4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~   83 (96)
T 2x1f_A            4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD   83 (96)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence            79999999999999999999999999999999875    48999999999999999999999999999999999998654

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=99.84  E-value=1.8e-20  Score=113.28  Aligned_cols=73  Identities=18%  Similarity=0.321  Sum_probs=69.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||.|.++++|++|+ .|||..+.|++|.|..+..
T Consensus         8 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~   84 (89)
T 3ucg_A            8 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT   84 (89)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence            79999999999999999999999999999999874    5899999999999999999 9999999999999999874

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=99.84  E-value=8.5e-21  Score=119.64  Aligned_cols=75  Identities=15%  Similarity=0.177  Sum_probs=69.5

Q ss_pred             eEeeeecCCcc------hhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCe-eeEEEe
Q psy11609          2 ALFIYVVSDTS------LKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGC-KIDVSP   72 (83)
Q Consensus         2 ~lfv~k~~d~~------~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~-~i~V~~   72 (83)
                      +|||++++.++      ++++|++.|++||+|.+|+|++..  ++|||||+|.++++|++|+..|||..|.|+ +|.|..
T Consensus        17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~   96 (105)
T 2nlw_A           17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNL   96 (105)
T ss_dssp             EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEEC
T ss_pred             EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEE
Confidence            79999999988      789999999999999999998543  689999999999999999999999999999 999999


Q ss_pred             cCCC
Q psy11609         73 YHDV   76 (83)
Q Consensus        73 a~g~   76 (83)
                      |...
T Consensus        97 a~~~  100 (105)
T 2nlw_A           97 FTDF  100 (105)
T ss_dssp             SCCC
T ss_pred             cchH
Confidence            9754

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.2e-20  Score=115.49  Aligned_cols=75  Identities=16%  Similarity=0.278  Sum_probs=71.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++.|||..+.|++|+|+.+...
T Consensus         7 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   85 (95)
T 2dnz_A            7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTER   85 (95)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccc
Confidence            79999999999999999999999999999999975    5899999999999999999999999999999999999843

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.84  E-value=1.2e-20  Score=117.44  Aligned_cols=76  Identities=14%  Similarity=0.263  Sum_probs=71.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.|..++...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   96 (103)
T 2cq0_A           17 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST   96 (103)
T ss_dssp             EEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence            79999999999999999999999999999999875    48999999999999999999999999999999999998543

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.84  E-value=7.1e-21  Score=116.74  Aligned_cols=76  Identities=21%  Similarity=0.272  Sum_probs=71.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEE-EEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWV-KIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv-~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+| +|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.|..+..+
T Consensus         7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   86 (96)
T 1x5t_A            7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK   86 (96)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeccc
Confidence            79999999999999999999999999999 999874    5899999999999999999999999999999999999854


Q ss_pred             C
Q psy11609         77 D   77 (83)
Q Consensus        77 ~   77 (83)
                      +
T Consensus        87 ~   87 (96)
T 1x5t_A           87 D   87 (96)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.84  E-value=1.2e-20  Score=115.25  Aligned_cols=73  Identities=23%  Similarity=0.279  Sum_probs=69.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||.|.++++|++|+..|||..+.|++|.|+.+.
T Consensus        17 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~   93 (95)
T 2cqc_A           17 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPS   93 (95)
T ss_dssp             CEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCS
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecC
Confidence            79999999999999999999999999999999875    48999999999999999999999999999999999886

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=99.84  E-value=3.1e-21  Score=119.80  Aligned_cols=76  Identities=21%  Similarity=0.280  Sum_probs=72.7

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      .||||++++.+..+++|++.|++||+|.+|+++.+ ++|||||.|.++++|++|+..|||..+.|++|.|..+..+.
T Consensus         1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   76 (101)
T 2hvz_A            1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP   76 (101)
T ss_dssp             CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence            58999999999999999999999999999999998 89999999999999999999999999999999999998554

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=99.84  E-value=4.1e-21  Score=115.60  Aligned_cols=69  Identities=14%  Similarity=0.153  Sum_probs=64.4

Q ss_pred             eEeeeecCCcc------hhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCe-eeEE
Q psy11609          2 ALFIYVVSDTS------LKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGC-KIDV   70 (83)
Q Consensus         2 ~lfv~k~~d~~------~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~-~i~V   70 (83)
                      ||||++++.+.      ++++|++.|++||+|.+|+++++.  ++|||||.|.++++|++|+..|||..|.|+ +|.|
T Consensus         3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V   80 (81)
T 2krb_A            3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV   80 (81)
T ss_dssp             EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence            79999999888      779999999999999999998543  689999999999999999999999999999 9987

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=117.64  Aligned_cols=76  Identities=17%  Similarity=0.336  Sum_probs=71.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEecc--CCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ--GGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d--~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+  .++|||||.|.++++|++|+..|||..|.|++|.|..+...+
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   94 (103)
T 2d9p_A           17 NLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE   94 (103)
T ss_dssp             CEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence            7999999999999999999999999999999987  468999999999999999999999999999999999998543

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.84  E-value=4.9e-21  Score=124.48  Aligned_cols=75  Identities=9%  Similarity=0.037  Sum_probs=69.4

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC--CceecCeeeEEEecCCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH--EKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n--g~~~~g~~i~V~~a~g~~   77 (83)
                      .+|||++|+++..+++|++.|++||+|++|+|+.+  +|||||+|.++++|++|++.++  |..|.|++|+|+.+...+
T Consensus        17 ~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~   93 (105)
T 1sjq_A           17 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE   93 (105)
T ss_dssp             CEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence            37999999999999999999999999999999985  8999999999999999999886  479999999999998544

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.83  E-value=2.2e-20  Score=115.15  Aligned_cols=76  Identities=22%  Similarity=0.304  Sum_probs=71.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.       ++|||||.|.++++|++|+..|||..|.|++|.|..+.
T Consensus         7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~   86 (98)
T 2cpf_A            7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE   86 (98)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence            79999999999999999999999999999999864       37899999999999999999999999999999999998


Q ss_pred             CCC
Q psy11609         75 DVD   77 (83)
Q Consensus        75 g~~   77 (83)
                      ...
T Consensus        87 ~~~   89 (98)
T 2cpf_A           87 RAT   89 (98)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            543

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=116.03  Aligned_cols=76  Identities=18%  Similarity=0.195  Sum_probs=71.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.   ++|||||.|.++++|++|+..|||..+.|++|.|..+..+.
T Consensus        19 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   97 (100)
T 2do4_A           19 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP   97 (100)
T ss_dssp             CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence            79999999999999999999999999999999976   47999999999999999999999999999999999998543

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=99.83  E-value=8.4e-21  Score=121.36  Aligned_cols=70  Identities=13%  Similarity=0.050  Sum_probs=67.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      -|||++|+.++.+++|++.|++||+|.++++..  ++|||||.|.+++||++|+++|||..++|++|.|..|
T Consensus         9 wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A   78 (89)
T 2wbr_A            9 WLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP   78 (89)
T ss_dssp             EEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred             eEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence            489999999999999999999999999999977  8999999999999999999999999999999999998

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=1.8e-20  Score=117.88  Aligned_cols=75  Identities=16%  Similarity=0.282  Sum_probs=71.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+. ++|||||.|.++++|++|++.|||..|.|++|.|+.+...
T Consensus        24 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   99 (109)
T 1x4a_A           24 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSG   99 (109)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccC
Confidence            79999999999999999999999999999998876 5899999999999999999999999999999999999854

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=99.83  E-value=2.4e-20  Score=118.04  Aligned_cols=75  Identities=20%  Similarity=0.245  Sum_probs=71.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||+++..+..+++|++.|++||.|.+|+|+.+.    ++|||||+|.++++|++|++.|||..|.|++|.|..+...
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   95 (115)
T 2dgo_A           17 HVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK   95 (115)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence            79999999999999999999999999999999875    4899999999999999999999999999999999999844

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=1.1e-20  Score=117.21  Aligned_cols=76  Identities=21%  Similarity=0.263  Sum_probs=71.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++.|||..|.|++|.|..+..+.
T Consensus        14 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~   93 (102)
T 2cqb_A           14 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR   93 (102)
T ss_dssp             CEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence            79999999999999999999999999999999874    58999999999999999999999999999999999998554

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=1.6e-20  Score=119.31  Aligned_cols=75  Identities=24%  Similarity=0.272  Sum_probs=71.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.+.  ++|||||.|.++++|++|+..|||..|.|++|.|+.+...
T Consensus        31 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  107 (109)
T 2err_A           31 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR  107 (109)
T ss_dssp             EEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred             EEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            79999999999999999999999999999999875  5899999999999999999999999999999999999754

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=99.83  E-value=1.4e-20  Score=116.68  Aligned_cols=73  Identities=19%  Similarity=0.202  Sum_probs=69.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeE--------EEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSW--------VKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Its--------v~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      +|||++++.+..+++|++.|++||.|.+        |+|+.+.    ++|||||.|.++++|++|++.|||..+.|++|.
T Consensus        15 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~   94 (99)
T 2la6_A           15 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIK   94 (99)
T ss_dssp             EEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence            7999999999999999999999999999        9999875    489999999999999999999999999999999


Q ss_pred             EEecC
Q psy11609         70 VSPYH   74 (83)
Q Consensus        70 V~~a~   74 (83)
                      |+.|+
T Consensus        95 V~~A~   99 (99)
T 2la6_A           95 VSFAT   99 (99)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99874

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=1.4e-20  Score=117.21  Aligned_cols=77  Identities=18%  Similarity=0.230  Sum_probs=72.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.|..+..+.
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   96 (105)
T 1x5u_A           17 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN   96 (105)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence            79999999999999999999999999999999976    58899999999999999999999999999999999998654


Q ss_pred             c
Q psy11609         78 F   78 (83)
Q Consensus        78 ~   78 (83)
                      .
T Consensus        97 ~   97 (105)
T 1x5u_A           97 K   97 (105)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=8.4e-21  Score=120.91  Aligned_cols=72  Identities=11%  Similarity=0.090  Sum_probs=68.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++++.++.+++|++.|++||+|.+|.|+.+.   ++|||||+|.++++|++|+. +||..|.|++|.|..++
T Consensus        13 ~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~   87 (103)
T 1s79_A           13 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD   87 (103)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred             EEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence            79999999999999999999999999999999976   69999999999999999998 99999999999998765

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=8.7e-21  Score=117.69  Aligned_cols=76  Identities=25%  Similarity=0.363  Sum_probs=72.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++.|||..|.|++|.|+.+..+.
T Consensus        14 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   93 (102)
T 1x5s_A           14 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS   93 (102)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence            79999999999999999999999999999999975    58899999999999999999999999999999999998554

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=99.83  E-value=1.8e-20  Score=114.12  Aligned_cols=77  Identities=19%  Similarity=0.208  Sum_probs=72.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF   78 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~   78 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.  ++|||||.|.++++|++|+..|||..+.|++|.|..+..+..
T Consensus        10 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~   88 (92)
T 2dgv_A           10 QIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASG   88 (92)
T ss_dssp             EEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence            79999999999999999999999999999999865  589999999999999999999999999999999999986543

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.83  E-value=4.2e-20  Score=116.72  Aligned_cols=74  Identities=15%  Similarity=0.185  Sum_probs=70.3

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecC-----eeeEEEecCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG-----CKIDVSPYHD   75 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g-----~~i~V~~a~g   75 (83)
                      .+|||++|+.+..+++|++.|++||+|.+|+|+.+   |||||+|.++++|++|++.|||..|.|     ++|.|+.++.
T Consensus        16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~   92 (108)
T 1x4c_A           16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP   92 (108)
T ss_dssp             CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCC
Confidence            37999999999999999999999999999999987   999999999999999999999999999     9999999985


Q ss_pred             CC
Q psy11609         76 VD   77 (83)
Q Consensus        76 ~~   77 (83)
                      ..
T Consensus        93 ~~   94 (108)
T 1x4c_A           93 RS   94 (108)
T ss_dssp             CS
T ss_pred             CC
Confidence            43

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=3.6e-20  Score=114.59  Aligned_cols=75  Identities=21%  Similarity=0.349  Sum_probs=70.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++ |||..|.|++|.|..+..+.
T Consensus        12 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~   90 (99)
T 2dgs_A           12 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD   90 (99)
T ss_dssp             EEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence            79999999999999999999999999999999875    58999999999999999998 99999999999999998544

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=99.83  E-value=2.7e-20  Score=116.34  Aligned_cols=73  Identities=12%  Similarity=0.082  Sum_probs=69.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.   ++|||||+|.++++|++|+..|||..|.|++|.|+++.
T Consensus        31 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~  106 (107)
T 3ulh_A           31 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT  106 (107)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence            79999999999999999999999999999999875   58999999999999999999999999999999999875

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=99.83  E-value=2.2e-20  Score=118.51  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++.|||..|.|++|.|+.+....
T Consensus        27 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~  106 (115)
T 2cpz_A           27 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN  106 (115)
T ss_dssp             CEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            79999999999999999999999999999999876    47899999999999999999999999999999999997543

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=99.83  E-value=2.7e-20  Score=118.27  Aligned_cols=73  Identities=22%  Similarity=0.288  Sum_probs=69.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|++|++.|||..|.|++|+|+.+.
T Consensus        42 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak  118 (118)
T 2khc_A           42 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK  118 (118)
T ss_dssp             EEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence            79999999999999999999999999999999874    58999999999999999999999999999999999873

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=99.83  E-value=2.5e-20  Score=116.16  Aligned_cols=76  Identities=13%  Similarity=0.207  Sum_probs=71.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecC---eeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFG---CKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g---~~i~V~~a~g   75 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.   ++|||||.|.++++|++|++.|||..+.|   ++|.|..++.
T Consensus        17 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~   96 (105)
T 2dnh_A           17 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADT   96 (105)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECcc
Confidence            79999999999999999999999999999999986   48999999999999999999999999998   9999999985


Q ss_pred             CC
Q psy11609         76 VD   77 (83)
Q Consensus        76 ~~   77 (83)
                      ..
T Consensus        97 ~~   98 (105)
T 2dnh_A           97 DK   98 (105)
T ss_dssp             SC
T ss_pred             Cc
Confidence            43

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.83  E-value=1.1e-20  Score=116.53  Aligned_cols=76  Identities=11%  Similarity=0.062  Sum_probs=71.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++||+|.+++++.+.    ++|||||.|.++++|++|++.|||..|.|++|.|+.+.++.
T Consensus        17 ~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   96 (98)
T 2cqp_A           17 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGPS   96 (98)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCCC
Confidence            79999999999999999999999999988888764    48999999999999999999999999999999999998765

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=99.83  E-value=2.9e-20  Score=119.61  Aligned_cols=77  Identities=25%  Similarity=0.345  Sum_probs=72.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF   78 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~   78 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.   ++|||||.|.++++|++|+..|||..|.|++|.|+.++.+..
T Consensus         9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~   88 (116)
T 2fy1_A            9 KLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF   88 (116)
T ss_dssp             EEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence            79999999999999999999999999999999976   689999999999999999999999999999999999986543

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=1.7e-20  Score=116.77  Aligned_cols=75  Identities=20%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.|..+...
T Consensus        15 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   93 (103)
T 2dnm_A           15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG   93 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence            79999999999999999999999999999999875    4899999999999999999999999999999999999843

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.83  E-value=1.8e-20  Score=116.39  Aligned_cols=76  Identities=14%  Similarity=0.259  Sum_probs=71.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      ||||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||.|.++++|++|++.|||..+.|++|.|..+....
T Consensus        10 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   89 (104)
T 1p1t_A           10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK   89 (104)
T ss_dssp             CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred             EEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence            79999999999999999999999999999999875    48999999999999999999999999999999999998654

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=1.2e-20  Score=116.89  Aligned_cols=75  Identities=12%  Similarity=0.170  Sum_probs=71.1

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      .+|||++|+.+..+++|++.|++||+|. +.++.+.++|||||.|.++++|++|+..|||..|.|++|.|+.+..+
T Consensus        20 ~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~   94 (97)
T 2e5j_A           20 ADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ   94 (97)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred             CEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence            3899999999999999999999999998 88888889999999999999999999999999999999999999864

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=99.82  E-value=2.5e-20  Score=117.96  Aligned_cols=74  Identities=15%  Similarity=0.156  Sum_probs=71.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++||.|.+|.++.++ ++|||||.|.++++|.+|+..|||..+.|++|.|..++.
T Consensus        10 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~   84 (115)
T 3lqv_A           10 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA   84 (115)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence            79999999999999999999999999999999876 689999999999999999999999999999999999974

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=3.2e-20  Score=115.81  Aligned_cols=74  Identities=18%  Similarity=0.288  Sum_probs=70.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.|..|..
T Consensus        25 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~  102 (106)
T 1p27_B           25 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV  102 (106)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecC
Confidence            69999999999999999999999999999999875    389999999999999999999999999999999999873

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.82  E-value=1.3e-20  Score=121.12  Aligned_cols=74  Identities=16%  Similarity=0.152  Sum_probs=68.2

Q ss_pred             CeEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc--eecCeeeEEEecCCC
Q psy11609          1 MALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK--HFFGCKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~--~~~g~~i~V~~a~g~   76 (83)
                      .+|||++|+. +..+++|++.|++||+|++|+|+.+  +|||||+|.++++|++|++.|||.  .|.|++|+|+.|+..
T Consensus        16 ~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~   92 (102)
T 1x4d_A           16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK--INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY   92 (102)
T ss_dssp             CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS--SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred             CEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence            3799999999 9999999999999999999999874  689999999999999999998864  699999999999853

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=5.7e-20  Score=117.37  Aligned_cols=74  Identities=11%  Similarity=0.048  Sum_probs=68.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhc--CCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS--HEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~--ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++||+|.+|.|+.+  +|||||+|.++++|++|++.+  ++..+.|++|+|+.+...+
T Consensus        17 ~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~   92 (101)
T 2cq1_A           17 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE   92 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence            7999999999999999999999999999999875  899999999999999999976  5789999999999998544

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=99.82  E-value=1.9e-20  Score=123.69  Aligned_cols=75  Identities=16%  Similarity=0.283  Sum_probs=71.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+ ++|||||.|.++++|++|+..|||..|.|++|.|+.+..+.
T Consensus        75 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~  149 (150)
T 2i2y_A           75 KVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK  149 (150)
T ss_dssp             EEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence            7999999999999999999999999999999987 79999999999999999999999999999999999998653

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=8.2e-20  Score=115.20  Aligned_cols=74  Identities=18%  Similarity=0.171  Sum_probs=70.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.+.   ++|||||.|.++++|++|+..|||..|.|++|.|..+..
T Consensus        17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   93 (114)
T 2do0_A           17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDER   93 (114)
T ss_dssp             CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEccc
Confidence            79999999999999999999999999999999876   489999999999999999999999999999999999874

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.82  E-value=3.9e-20  Score=115.33  Aligned_cols=76  Identities=16%  Similarity=0.269  Sum_probs=71.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEecc-C----CceEEEEEeCCchHHHHHHhhc-CCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ-G----GDRYGLVCFKKADDAEKAILGS-HEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d-~----~~g~afV~F~~pEdA~~A~~~~-ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+ .    ++|||||.|.++++|++|+..| ||..|.|++|.|..+..
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~   96 (107)
T 2cph_A           17 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS   96 (107)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCC
Confidence            7999999999999999999999999999999988 2    5899999999999999999999 99999999999999985


Q ss_pred             CC
Q psy11609         76 VD   77 (83)
Q Consensus        76 ~~   77 (83)
                      .+
T Consensus        97 ~~   98 (107)
T 2cph_A           97 EV   98 (107)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=99.82  E-value=2.2e-20  Score=123.59  Aligned_cols=76  Identities=11%  Similarity=0.092  Sum_probs=69.2

Q ss_pred             eEeeeecCCcchhhHHH----HHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLY----HEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~----~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++|+.+..+++|+    +.|++||+|.+|.++.+. ++|||||.|.++++|++|+..|||..|.|++|.|..|...
T Consensus        31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~  110 (127)
T 2a3j_A           31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP  110 (127)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence            79999999988887765    689999999999998764 7999999999999999999999999999999999999864


Q ss_pred             C
Q psy11609         77 D   77 (83)
Q Consensus        77 ~   77 (83)
                      .
T Consensus       111 ~  111 (127)
T 2a3j_A          111 Q  111 (127)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=99.82  E-value=3.3e-20  Score=116.64  Aligned_cols=74  Identities=16%  Similarity=0.239  Sum_probs=70.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.|..+..
T Consensus        28 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~  105 (110)
T 1oo0_B           28 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV  105 (110)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence            79999999999999999999999999999999875    489999999999999999999999999999999999873

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=99.82  E-value=3.6e-20  Score=119.57  Aligned_cols=74  Identities=19%  Similarity=0.207  Sum_probs=69.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCce--ecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH--FFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~--~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+++..+++|+..|++||+|++|++++  ++|||||+|.++++|++|++.|||..  +.|++|+|+.++..+
T Consensus        23 ~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~--~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~   98 (100)
T 3r27_A           23 VVHIRGLIDGVVEADLVEALQEFGPISYVVVMP--KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK   98 (100)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc--CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence            799999999999999999999999999999986  68999999999999999999999874  789999999998654

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.82  E-value=2.3e-20  Score=110.25  Aligned_cols=72  Identities=19%  Similarity=0.279  Sum_probs=68.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++++.+..+++|++.|++||+|.+|.++.+.    ++|||||.|.++++|++|+..+| ..+.|++|.|..|.
T Consensus         2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a~   77 (77)
T 1uaw_A            2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVAF   77 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEecC
Confidence            79999999999999999999999999999999875    48999999999999999999999 99999999999874

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.82  E-value=4.6e-20  Score=113.96  Aligned_cols=74  Identities=12%  Similarity=0.169  Sum_probs=69.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec--CeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF--GCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~--g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.+  +|||||.|.++++|++|++.|||..+.  |++|.|+.+..+.
T Consensus        19 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~   94 (97)
T 1why_A           19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP   94 (97)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence            7999999999999999999999999999999875  889999999999999999999999999  9999999998543

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.82  E-value=5.7e-20  Score=113.91  Aligned_cols=74  Identities=18%  Similarity=0.174  Sum_probs=70.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.  ++|||||.|.++++|++|++.|||..|.|++|.|..+..+.
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~--~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~   90 (99)
T 2cpj_A           17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA   90 (99)
T ss_dssp             EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence            799999999999999999999999999999986  48999999999999999999999999999999999998544

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=99.82  E-value=4.8e-20  Score=117.32  Aligned_cols=75  Identities=16%  Similarity=0.283  Sum_probs=71.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++.+||..|.|++|.|..+...
T Consensus        28 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k  106 (108)
T 2jrs_A           28 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER  106 (108)
T ss_dssp             EEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence            79999999999999999999999999999999875    4899999999999999999999999999999999998753

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=3.8e-20  Score=114.23  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=70.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCcee-EEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCee----eEEEe
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVS-WVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCK----IDVSP   72 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~It-sv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~----i~V~~   72 (83)
                      +|||++++.+..+++|++.|++||+|. +|+|+.+.    ++|||||.|.++++|++|++.|||..+.|++    |.|+.
T Consensus        11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~   90 (99)
T 2div_A           11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNY   90 (99)
T ss_dssp             EEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEee
Confidence            899999999999999999999999999 99999885    4799999999999999999999999999999    99999


Q ss_pred             cCCC
Q psy11609         73 YHDV   76 (83)
Q Consensus        73 a~g~   76 (83)
                      |...
T Consensus        91 a~~~   94 (99)
T 2div_A           91 ATYS   94 (99)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            9843

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.82  E-value=1.8e-20  Score=123.46  Aligned_cols=74  Identities=12%  Similarity=0.190  Sum_probs=68.3

Q ss_pred             eEee--eecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee-----cCeeeEEEecC
Q psy11609          2 ALFI--YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF-----FGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv--~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~-----~g~~i~V~~a~   74 (83)
                      +|||  ++|+.++.+++|++.|++||+|.+|+|+.  ++|||||+|.+++||++|+++|||+.+     .|++|+|..++
T Consensus        27 ~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~--~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~  104 (114)
T 2cq2_A           27 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE  104 (114)
T ss_dssp             EEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred             EEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence            6999  88999999999999999999999998865  589999999999999999999999998     79999999998


Q ss_pred             CCC
Q psy11609         75 DVD   77 (83)
Q Consensus        75 g~~   77 (83)
                      ..+
T Consensus       105 ~~p  107 (114)
T 2cq2_A          105 KVQ  107 (114)
T ss_dssp             CCC
T ss_pred             cCc
Confidence            543

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=7.3e-20  Score=110.05  Aligned_cols=71  Identities=17%  Similarity=0.256  Sum_probs=67.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhc-CCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS-HEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~-ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.  ++|||||.|.++++|++|+..| ||..+.|++|.|+.|.
T Consensus        14 ~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~--~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak   85 (85)
T 2ytc_A           14 TLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ--RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR   85 (85)
T ss_dssp             CEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC--CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence            799999999999999999999999999999997  5899999999999999999999 9999999999999874

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=99.82  E-value=2.7e-20  Score=114.32  Aligned_cols=75  Identities=15%  Similarity=0.195  Sum_probs=70.4

Q ss_pred             eEeeeecCCcchhhHHH----HHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLY----HEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~----~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|+    +.|++||+|.+|+++..+ ++|||||.|.++++|++|+..|||..+.|++|.|..+..+
T Consensus        10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~   89 (97)
T 1nu4_A           10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD   89 (97)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence            79999999999999999    999999999999998654 6899999999999999999999999999999999999854

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.82  E-value=7.5e-20  Score=111.67  Aligned_cols=72  Identities=26%  Similarity=0.392  Sum_probs=68.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      ||||++++.+..+++|++.|++||+|.+|+++    +|||||.|.++++|++|++.|||..+.|++|.|+.+..+.
T Consensus        10 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   81 (90)
T 2dnq_A           10 KLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS   81 (90)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence            79999999999999999999999999999998    6899999999999999999999999999999999998543

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.82  E-value=5e-20  Score=115.47  Aligned_cols=75  Identities=16%  Similarity=0.236  Sum_probs=71.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcC------CceecCeeeEEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSH------EKHFFGCKIDVS   71 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~n------g~~~~g~~i~V~   71 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..||      |..|.|++|.|.
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~   96 (111)
T 1x4h_A           17 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVD   96 (111)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEE
Confidence            79999999999999999999999999999999874    58999999999999999999999      999999999999


Q ss_pred             ecCCC
Q psy11609         72 PYHDV   76 (83)
Q Consensus        72 ~a~g~   76 (83)
                      .+...
T Consensus        97 ~a~~~  101 (111)
T 1x4h_A           97 LAVTR  101 (111)
T ss_dssp             CCCCC
T ss_pred             ECCCC
Confidence            99844

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=99.82  E-value=2.6e-20  Score=116.19  Aligned_cols=76  Identities=18%  Similarity=0.249  Sum_probs=71.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCcee---cCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHF---FGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~---~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..|||..+   .|++|.|..+.
T Consensus        15 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~   94 (106)
T 2dgp_A           15 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPAD   94 (106)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECC
Confidence            79999999999999999999999999999999975    589999999999999999999999988   89999999998


Q ss_pred             CCC
Q psy11609         75 DVD   77 (83)
Q Consensus        75 g~~   77 (83)
                      ...
T Consensus        95 ~~~   97 (106)
T 2dgp_A           95 SES   97 (106)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            543

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=99.82  E-value=2.1e-20  Score=114.43  Aligned_cols=73  Identities=12%  Similarity=0.096  Sum_probs=69.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+++++.+.    ++|||||.|.++++|++|++.|||..|.|++|.|+.+.
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~   93 (95)
T 2ek1_A           17 VIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS   93 (95)
T ss_dssp             EEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence            79999999999999999999999999999998865    47999999999999999999999999999999999875

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.82  E-value=2.4e-20  Score=119.16  Aligned_cols=72  Identities=14%  Similarity=0.135  Sum_probs=68.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.+..+++|++.|++||+|.+|.|+.  ++|||||.|.++++|++|++.|||..|.|++|+|+.+..
T Consensus        12 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~   83 (111)
T 1whx_A           12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence            799999999999999999999999999999875  789999999999999999999999999999999998864

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=99.81  E-value=2.1e-20  Score=110.39  Aligned_cols=71  Identities=18%  Similarity=0.239  Sum_probs=66.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||.|.++++|++|++ |||..+.|++|.|..|
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A   75 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred             CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence            58999999999999999999999999999999875    58999999999999999997 9999999999999865

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=99.81  E-value=1e-19  Score=113.65  Aligned_cols=71  Identities=20%  Similarity=0.330  Sum_probs=67.8

Q ss_pred             eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++. +..+++|++.|++||.|.+|++    ++|||||.|.++++|++|+..|||..+.|++|.|+.+...
T Consensus        24 ~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~   95 (97)
T 2xnq_A           24 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN   95 (97)
T ss_dssp             EEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence            799999998 9999999999999999999999    4899999999999999999999999999999999999864

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=99.81  E-value=1.7e-20  Score=114.16  Aligned_cols=75  Identities=19%  Similarity=0.295  Sum_probs=68.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.+++ |.+|+..|||..+.|++|.|..|..+.
T Consensus         3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~   81 (90)
T 2ki2_A            3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK   81 (90)
T ss_dssp             EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred             EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence            79999999999999999999999999999999875    5899999999999 999999999999999999999998543

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=99.81  E-value=6.1e-20  Score=124.38  Aligned_cols=74  Identities=20%  Similarity=0.189  Sum_probs=70.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCC--ceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHG--KVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG--~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.++.+++|++.|++||  +|.+|+|+.|.    ++|||||+|.++++|++|+..|||..|.|++|.|..+..
T Consensus        57 ~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~  136 (156)
T 3n9u_C           57 AVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR  136 (156)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence            799999999999999999999999  99999999885    589999999999999999999999999999999999864

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=99.81  E-value=1.8e-19  Score=108.98  Aligned_cols=71  Identities=25%  Similarity=0.290  Sum_probs=66.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||+|.++++|++|+. ++|..|.|++|.|..|
T Consensus        13 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A   87 (87)
T 3s7r_A           13 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA   87 (87)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence            79999999999999999999999999999999875    48999999999999999995 5888999999999875

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=8.6e-20  Score=115.57  Aligned_cols=72  Identities=22%  Similarity=0.260  Sum_probs=68.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+ .|||..|.|++|.|..+.
T Consensus        27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~  102 (114)
T 2cq4_A           27 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ  102 (114)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence            79999999999999999999999999999999865    5899999999999999999 999999999999999876

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=99.81  E-value=1.4e-19  Score=115.85  Aligned_cols=73  Identities=19%  Similarity=0.338  Sum_probs=69.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+ +|||..|.|++|.|..+..
T Consensus        38 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~  114 (124)
T 2jwn_A           38 SVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT  114 (124)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence            79999999999999999999999999999999874    5899999999999999999 8999999999999999974

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=4.5e-20  Score=121.92  Aligned_cols=74  Identities=9%  Similarity=0.046  Sum_probs=69.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC--ceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE--KHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng--~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++||+|++|+|+.+  +|||||+|.++++|++|+..+|+  ..|.|++|+|+.++..+
T Consensus        33 ~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~  108 (119)
T 2ad9_A           33 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE  108 (119)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence            7999999999999999999999999999999986  89999999999999999999885  68999999999998544

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.81  E-value=1.3e-19  Score=112.96  Aligned_cols=74  Identities=9%  Similarity=0.122  Sum_probs=69.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++|| |.+|+|+.+.    ++|||||.|.++++|++|+ .|||..|.|++|.|..+....
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~   94 (103)
T 2dng_A           17 TAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRK   94 (103)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCC
Confidence            799999999999999999999998 9999999886    4899999999999999999 999999999999999998543

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=7.2e-20  Score=115.36  Aligned_cols=74  Identities=11%  Similarity=0.202  Sum_probs=70.4

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      .||||++++.+..+++|++.|++||+|.+|+++.+  +|||||.|.++++|++|+..|||..|.|++|.|..+...
T Consensus        26 ~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   99 (109)
T 1x4g_A           26 CTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES   99 (109)
T ss_dssp             CEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence            38999999999999999999999999999999986  899999999999999999999999999999999999843

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=99.81  E-value=6.7e-20  Score=118.42  Aligned_cols=72  Identities=22%  Similarity=0.272  Sum_probs=68.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++.|||..|.|++|.|+.|
T Consensus        65 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A  140 (140)
T 2ku7_A           65 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA  140 (140)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred             EEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence            79999999999999999999999999999999874    5899999999999999999999999999999999875

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=4.1e-20  Score=114.99  Aligned_cols=76  Identities=16%  Similarity=0.140  Sum_probs=71.4

Q ss_pred             CeEeeeecCCcchhhHHHHHhcc-CCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCce-ecCeeeEEEecCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKK-HGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKH-FFGCKIDVSPYHD   75 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~k-fG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~-~~g~~i~V~~a~g   75 (83)
                      .+|||++|+.+..+++|++.|++ ||+|.+|+|+.+.   ++|||||.|.++++|++|+..|||.. |.|++|.|..+..
T Consensus        10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~   89 (104)
T 2dhg_A           10 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP   89 (104)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence            37999999999999999999999 9999999999875   58999999999999999999999999 9999999999974


Q ss_pred             C
Q psy11609         76 V   76 (83)
Q Consensus        76 ~   76 (83)
                      .
T Consensus        90 ~   90 (104)
T 2dhg_A           90 K   90 (104)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=99.81  E-value=1.1e-19  Score=118.30  Aligned_cols=75  Identities=21%  Similarity=0.321  Sum_probs=71.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.|..+...
T Consensus        44 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  122 (139)
T 1u6f_A           44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASG  122 (139)
T ss_dssp             EEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            79999999999999999999999999999999885    4899999999999999999999999999999999999844

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.81  E-value=5.2e-20  Score=117.91  Aligned_cols=74  Identities=15%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc--eecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK--HFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~--~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++||+|.+|.|+.  ++|||||+|.++++|++|++.|||.  .+.|++|+|+.+....
T Consensus        17 ~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~   92 (104)
T 1wex_A           17 VVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR   92 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence            799999999999999999999999999999987  4899999999999999999988764  6999999999998543

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.7e-19  Score=110.53  Aligned_cols=72  Identities=25%  Similarity=0.340  Sum_probs=68.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+++    ||||.|.++++|++|+..|||..|.|++|.|..+....
T Consensus        12 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~   83 (92)
T 2dgt_A           12 KLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL   83 (92)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence            7999999999999999999999999999999754    99999999999999999999999999999999998543

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.81  E-value=3.6e-20  Score=118.67  Aligned_cols=64  Identities=20%  Similarity=0.175  Sum_probs=59.5

Q ss_pred             chhhHHHHHhccCCceeEEEEeccC------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609         12 SLKDGLYHEYKKHGKVSWVKIIGQG------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus        12 ~~~d~L~~eF~kfG~Itsv~V~~d~------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      .++++|+++|++||+|.+|+|+.+.      ++|+|||.|+++++|++|+++|||++|.||+|.|+.++.
T Consensus        27 ~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~   96 (105)
T 3v4m_A           27 EIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDP   96 (105)
T ss_dssp             HHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             HHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCH
Confidence            4678899999999999999999874      589999999999999999999999999999999999864

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=99.81  E-value=4.5e-20  Score=115.24  Aligned_cols=74  Identities=14%  Similarity=0.175  Sum_probs=69.6

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      .||||++++.+..+++|++.|++|| |.+|+|+.+.     ++|||||.|.++++|++|+ .|||..|.|++|.|..+..
T Consensus        20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~   97 (100)
T 2j76_E           20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQ   97 (100)
T ss_dssp             CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCC
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccC
Confidence            3899999999999999999999999 9999999875     5899999999999999999 9999999999999999975


Q ss_pred             C
Q psy11609         76 V   76 (83)
Q Consensus        76 ~   76 (83)
                      .
T Consensus        98 ~   98 (100)
T 2j76_E           98 A   98 (100)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=2.1e-19  Score=114.03  Aligned_cols=73  Identities=18%  Similarity=0.210  Sum_probs=69.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..+|+ .|.|++|.|..+..
T Consensus        19 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~   95 (116)
T 2cqd_A           19 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL   95 (116)
T ss_dssp             EEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEccc
Confidence            79999999999999999999999999999999975    589999999999999999999999 89999999999964

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=99.81  E-value=4.7e-20  Score=118.32  Aligned_cols=73  Identities=18%  Similarity=0.305  Sum_probs=70.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|++|+..|||..|.|++|.|+.+.
T Consensus        24 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~  100 (126)
T 3ex7_B           24 ILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF  100 (126)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence            79999999999999999999999999999999875    48999999999999999999999999999999999997

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=1.1e-19  Score=111.71  Aligned_cols=76  Identities=14%  Similarity=0.022  Sum_probs=71.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEE-EEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWV-KIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv-~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+| .|+.+...+.|||.|.++++|++|+..|||..|.|++|.|..|+..+
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~   93 (96)
T 2e44_A           17 KLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM   93 (96)
T ss_dssp             CEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred             EEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence            79999999999999999999999999999 58888877779999999999999999999999999999999998654

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.81  E-value=2.9e-20  Score=121.55  Aligned_cols=65  Identities=25%  Similarity=0.244  Sum_probs=61.3

Q ss_pred             CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609         10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus        10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ++.++++|+++|++||+|.+|+|.++.++|+|||.|.++++|++|+++|||++|.||+|.|+.+.
T Consensus        27 ~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~   91 (114)
T 3s6e_A           27 DTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP   91 (114)
T ss_dssp             HHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             HHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence            35678889999999999999999998889999999999999999999999999999999999985

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=99.81  E-value=1.3e-19  Score=116.34  Aligned_cols=75  Identities=13%  Similarity=0.074  Sum_probs=71.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.   ++|||||.|.++++|++|+..|||..+.|++|.|+.|..+
T Consensus        37 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  114 (124)
T 2kt5_A           37 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ  114 (124)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence            79999999999999999999999999999999976   6899999999999999999999999999999999998754

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.81  E-value=1.1e-19  Score=126.92  Aligned_cols=73  Identities=19%  Similarity=0.291  Sum_probs=69.3

Q ss_pred             eEeeeecC-CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVS-DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~-d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++|+ .+..+++|+..|++||+|.+|+|+.+ ++|||||.|.++++|++|++.|||..+.|++|+|..+..
T Consensus         6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~   79 (205)
T 3tyt_A            6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ   79 (205)
T ss_dssp             EEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence            89999999 78999999999999999999999986 589999999999999999999999999999999998863

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=7.4e-20  Score=115.50  Aligned_cols=76  Identities=22%  Similarity=0.257  Sum_probs=71.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCcee--------EEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVS--------WVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~It--------sv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      ||||++|+.+..+++|++.|++||.|.        .|+|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   96 (113)
T 2cpe_A           17 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK   96 (113)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEE
Confidence            799999999999999999999999999        59999874    489999999999999999999999999999999


Q ss_pred             EEecCCCC
Q psy11609         70 VSPYHDVD   77 (83)
Q Consensus        70 V~~a~g~~   77 (83)
                      |..+....
T Consensus        97 V~~a~~~~  104 (113)
T 2cpe_A           97 VSLARKKP  104 (113)
T ss_dssp             EECSSCCC
T ss_pred             EEECCCCC
Confidence            99998543

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=9.4e-20  Score=113.73  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=69.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|++|+.. ||..|.|++|.|..+...
T Consensus        18 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~   95 (105)
T 2dh8_A           18 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPR   95 (105)
T ss_dssp             EECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence            79999999999999999999999999999999985    479999999999999999999 999999999999999743

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.81  E-value=1.6e-19  Score=112.68  Aligned_cols=74  Identities=14%  Similarity=0.177  Sum_probs=69.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++++.+..+++|++.|++|| |.+|+|+.+.     ++|||||.|.++++|++|+ .|||..|.|++|.|..+..+
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~   94 (104)
T 1wi8_A           17 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCC
Confidence            799999999999999999999999 9999999874     3899999999999999999 99999999999999999854


Q ss_pred             C
Q psy11609         77 D   77 (83)
Q Consensus        77 ~   77 (83)
                      .
T Consensus        95 ~   95 (104)
T 1wi8_A           95 Q   95 (104)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=110.73  Aligned_cols=72  Identities=24%  Similarity=0.334  Sum_probs=68.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++++    ||||.|.++++|++|+..|||..+.|++|.|..++...
T Consensus        11 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   82 (90)
T 2dnp_A           11 KIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ   82 (90)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence            7999999999999999999999999999999854    99999999999999999999999999999999998543

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=99.80  E-value=9.7e-20  Score=114.93  Aligned_cols=72  Identities=19%  Similarity=0.332  Sum_probs=68.5

Q ss_pred             eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+ ..+++|++.|++||+|.+|+|    ++|||||+|.++++|++|++.|||..|.|++|.|+.+..+.
T Consensus        29 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~  101 (110)
T 1wf1_A           29 RVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK  101 (110)
T ss_dssp             EEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence            7999999999 999999999999999999999    68999999999999999999999999999999999998544

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.80  E-value=1.3e-19  Score=118.95  Aligned_cols=66  Identities=27%  Similarity=0.275  Sum_probs=61.0

Q ss_pred             CcchhhHHHHHhccCCceeEEEEeccC--------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609         10 DTSLKDGLYHEYKKHGKVSWVKIIGQG--------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus        10 d~~~~d~L~~eF~kfG~Itsv~V~~d~--------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ++.++++|+++|++||+|.+|+|+.+.        ++|+|||.|.++++|.+|+++|||++|.||+|.|+.++.
T Consensus        35 ~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~  108 (118)
T 3ue2_A           35 DDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ  108 (118)
T ss_dssp             CTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred             HHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence            456899999999999999999999874        259999999999999999999999999999999999874

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.80  E-value=3.2e-19  Score=110.40  Aligned_cols=72  Identities=13%  Similarity=0.188  Sum_probs=66.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||+++  +..+++|++.|++||+|.+|+|.  .++|||||.|.++++|++|+..|||..|.|++|.|..+..+.
T Consensus        17 ~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~   88 (97)
T 1x5p_A           17 TLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP   88 (97)
T ss_dssp             EEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred             EEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence            7999984  78888999999999999999995  589999999999999999999999999999999999998543

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=99.80  E-value=8.1e-20  Score=120.82  Aligned_cols=75  Identities=21%  Similarity=0.193  Sum_probs=71.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||.|.++++|++|+..|||..|.|++|.|..+..+
T Consensus        72 ~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  150 (158)
T 2kn4_A           72 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG  150 (158)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence            79999999999999999999999999999999875    6899999999999999999999999999999999999843

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=99.80  E-value=7.9e-20  Score=113.39  Aligned_cols=71  Identities=11%  Similarity=0.104  Sum_probs=68.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++++.+..+++|++.|++||+|.+|+++  .++|||||.|.++++|++|+..|||..+.|++|.|..+.
T Consensus        29 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~--~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~   99 (101)
T 2la4_A           29 TAYIGNIPHFATEADLIPLFQNFGFILDFKHY--PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK   99 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred             EEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe--cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence            79999999999999999999999999999998  479999999999999999999999999999999998875

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=99.80  E-value=7.9e-20  Score=113.18  Aligned_cols=71  Identities=20%  Similarity=0.319  Sum_probs=67.3

Q ss_pred             eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++. +..+++|++.|++||+|.+|+|.    +|||||+|.++++|++|+..|||..+.|++|.|+.+...
T Consensus        12 ~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   83 (96)
T 2kvi_A           12 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSN   83 (96)
T ss_dssp             EEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcC
Confidence            799999998 99999999999999999999994    799999999999999999999999999999999999743

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=99.80  E-value=1e-19  Score=119.44  Aligned_cols=75  Identities=21%  Similarity=0.243  Sum_probs=71.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|++|+..|||..|.|++|.|..+..+
T Consensus        48 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~  126 (129)
T 2kxn_B           48 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK  126 (129)
T ss_dssp             CBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            79999999999999999999999999999999874    6899999999999999999999999999999999998754

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=99.80  E-value=1.8e-19  Score=114.87  Aligned_cols=71  Identities=25%  Similarity=0.305  Sum_probs=68.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++    +|||||.|.++++|++|+..|||..+.|++|.|+.+..+
T Consensus        33 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~  103 (108)
T 2jvo_A           33 RLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP  103 (108)
T ss_dssp             EEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence            79999999999999999999999999999998    899999999999999999999999999999999999854

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=99.80  E-value=2.4e-19  Score=119.02  Aligned_cols=76  Identities=14%  Similarity=0.125  Sum_probs=71.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.++.+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|++|+..|||..|.|++|.|+.+..+.
T Consensus        41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~  120 (156)
T 1h2v_Z           41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK  120 (156)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence            79999999999999999999999999999999875    47999999999999999999999999999999999998544

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.80  E-value=2.9e-19  Score=113.42  Aligned_cols=74  Identities=18%  Similarity=0.269  Sum_probs=70.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+.. ||..|.|++|.|..+...
T Consensus        29 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~  106 (116)
T 1x4b_A           29 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAR  106 (116)
T ss_dssp             EEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCC
Confidence            79999999999999999999999999999999975    589999999999999999998 999999999999999844

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=99.80  E-value=1e-19  Score=119.14  Aligned_cols=73  Identities=10%  Similarity=0.085  Sum_probs=67.7

Q ss_pred             eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC--CceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH--EKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n--g~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+++ +.+++|++.|++||+|++|+|++  ++|||||+|.++++|++|++.||  +..|.|++|+|+.++..
T Consensus        27 ~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~--~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~  102 (112)
T 1x4f_A           27 VIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY  102 (112)
T ss_dssp             EEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred             EEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence            7999999998 99999999999999999999986  68999999999999999999885  46799999999999854

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=99.80  E-value=2.2e-19  Score=112.19  Aligned_cols=72  Identities=25%  Similarity=0.380  Sum_probs=68.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+    ++||||+|.++++|++|++.|||..|.|++|.|..+..+.
T Consensus        13 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~   84 (103)
T 2dgu_A           13 VLFVRNLANTVTEEILEKAFSQFGKLERVKKL----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPD   84 (103)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCc
Confidence            79999999999999999999999999999997    4599999999999999999999999999999999998544

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=4.2e-19  Score=108.31  Aligned_cols=74  Identities=12%  Similarity=0.094  Sum_probs=69.5

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      .+|||++++.+..+++|++.|++| .|.+|+|+.+.   ++|||||.|.++++|++|+. |||..|.|++|.|..++..
T Consensus        11 ~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~   87 (91)
T 2dgw_A           11 HTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG   87 (91)
T ss_dssp             CEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred             cEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence            379999999999999999999999 99999999874   48999999999999999999 9999999999999999854

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.79  E-value=2.5e-19  Score=123.83  Aligned_cols=74  Identities=22%  Similarity=0.372  Sum_probs=70.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||+++..+..+++|++.|++||+|.+|+|+.|.  ++|||||+|.++|+|++|++.|||..|.|++|.|..|+.
T Consensus       105 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~  180 (213)
T 4f02_A          105 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS  180 (213)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             cceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            69999999999999999999999999999999876  589999999999999999999999999999999999874

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=99.79  E-value=2e-19  Score=125.04  Aligned_cols=77  Identities=13%  Similarity=0.181  Sum_probs=71.4

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHDVD   77 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g~~   77 (83)
                      ++|||++|+.+..+++|++.|++||+|.+|+|+.+.++|||||.|.++++|++|+++|||..|+|  |+|.|+.+...+
T Consensus        47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~  125 (164)
T 1sjr_A           47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS  125 (164)
T ss_dssp             EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred             EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence            36899999999999999999999999999999877788999999999999999999999999976  999999998543

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=99.79  E-value=3.6e-19  Score=110.05  Aligned_cols=70  Identities=16%  Similarity=0.162  Sum_probs=62.8

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee--cCeeeEEEecCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF--FGCKIDVSPYHD   75 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~--~g~~i~V~~a~g   75 (83)
                      +||||++|+.++.+++|++.|++||+|.+|+|+.+ ++|||||+|.++++|++    ++|..+  .|++|.|..|..
T Consensus        12 ~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~   83 (89)
T 3d2w_A           12 SKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP   83 (89)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred             CEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence            58999999999999999999999999999999986 89999999999999984    466554  599999999874

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=99.79  E-value=3.7e-20  Score=120.64  Aligned_cols=75  Identities=12%  Similarity=0.140  Sum_probs=70.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeE--EEEeccC----CceEEEEEeCCchHHHHHHhhcCCc----eecCeeeEEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSW--VKIIGQG----GDRYGLVCFKKADDAEKAILGSHEK----HFFGCKIDVS   71 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Its--v~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~----~~~g~~i~V~   71 (83)
                      +|||++|+.+..+++|++.|++||.|.+  |+|+.|.    ++|||||+|.++ +|.+|+..|||.    .+.|++|.|.
T Consensus        25 ~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~  103 (131)
T 2m2b_A           25 TIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVE  103 (131)
T ss_dssp             EEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEE
Confidence            7999999999999999999999999977  9999987    589999999999 999999999999    9999999999


Q ss_pred             ecCCCC
Q psy11609         72 PYHDVD   77 (83)
Q Consensus        72 ~a~g~~   77 (83)
                      .+...+
T Consensus       104 ~a~~~~  109 (131)
T 2m2b_A          104 FAKGSK  109 (131)
T ss_dssp             ECCCSC
T ss_pred             ECCCCC
Confidence            998543

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=5.9e-19  Score=112.44  Aligned_cols=75  Identities=17%  Similarity=0.297  Sum_probs=64.7

Q ss_pred             eEeeeecCCcc-----------hhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609          2 ALFIYVVSDTS-----------LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV   70 (83)
Q Consensus         2 ~lfv~k~~d~~-----------~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V   70 (83)
                      ||++.++.+..           ++++|+++|++||+|.+|.|....++|||||.|.++++|++|+..|||+.|.|++|.|
T Consensus        17 ~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v   96 (112)
T 2dit_A           17 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA   96 (112)
T ss_dssp             EEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEE
T ss_pred             EEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence            56776663322           4678999999999999997755558999999999999999999999999999999999


Q ss_pred             EecCCC
Q psy11609         71 SPYHDV   76 (83)
Q Consensus        71 ~~a~g~   76 (83)
                      ..|+..
T Consensus        97 ~~a~~~  102 (112)
T 2dit_A           97 QAWDGT  102 (112)
T ss_dssp             EECCSC
T ss_pred             EEeCCC
Confidence            999864

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.79  E-value=2.1e-19  Score=115.86  Aligned_cols=74  Identities=14%  Similarity=0.039  Sum_probs=69.5

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCc---eeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGK---VSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~---Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      .||||++|+.++.+++|++.|++||.   |.+|+|+.+.   ++|||||+|+++++|++|+. +||..|.|++|.|..++
T Consensus        18 ~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~   96 (118)
T 2db1_A           18 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH   96 (118)
T ss_dssp             CEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence            37999999999999999999999999   8999999875   58999999999999999999 99999999999999886


Q ss_pred             C
Q psy11609         75 D   75 (83)
Q Consensus        75 g   75 (83)
                      .
T Consensus        97 ~   97 (118)
T 2db1_A           97 R   97 (118)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=6.7e-19  Score=109.05  Aligned_cols=72  Identities=26%  Similarity=0.373  Sum_probs=67.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccC--CceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKH--GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kf--G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++|  |.|.+|+++    +|||||.|.++++|++|+..|||..|.|++|.|..+....
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   90 (99)
T 2cpd_A           17 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD   90 (99)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence            79999999999999999999999  999999884    6799999999999999999999999999999999998544

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=2.7e-19  Score=112.02  Aligned_cols=76  Identities=17%  Similarity=0.148  Sum_probs=69.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCc-eeEEEEe-ccC----CceEEEEEeCCchHHHHHHhhcC--CceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGK-VSWVKII-GQG----GDRYGLVCFKKADDAEKAILGSH--EKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~-Itsv~V~-~d~----~~g~afV~F~~pEdA~~A~~~~n--g~~~~g~~i~V~~a   73 (83)
                      ||||++|+.+..+++|++.|++||+ |.+|.++ .+.    ++|||||+|.++++|++|+..||  +..+.|++|.|..|
T Consensus        10 ~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a   89 (109)
T 2dis_A           10 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA   89 (109)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEc
Confidence            7999999999999999999999999 9999998 443    68999999999999999999996  58999999999999


Q ss_pred             CCCC
Q psy11609         74 HDVD   77 (83)
Q Consensus        74 ~g~~   77 (83)
                      ....
T Consensus        90 ~~~~   93 (109)
T 2dis_A           90 EPEI   93 (109)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            8443

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.79  E-value=6.4e-19  Score=114.14  Aligned_cols=76  Identities=16%  Similarity=0.218  Sum_probs=71.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      ||||++++.+..+++|++.|++||+|.+|+++.+.   ++|||||.|.++++|++|++.+||..+.|++|.|..+....
T Consensus         2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~   80 (166)
T 3md3_A            2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ   80 (166)
T ss_dssp             EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred             EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence            79999999999999999999999999999999876   58999999999999999999999999999999999987443

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=4e-19  Score=112.24  Aligned_cols=75  Identities=15%  Similarity=0.093  Sum_probs=70.1

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCcee--------cCeeeE
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHF--------FGCKID   69 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~--------~g~~i~   69 (83)
                      .+|||++++.+..+++|++.|++||+|.+|+|+.+.   ++|||||.|.++++|++|+..|||..+        .|+||.
T Consensus        26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~  105 (114)
T 1x5o_A           26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLL  105 (114)
T ss_dssp             TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCcee
Confidence            379999999999999999999999999999999985   489999999999999999999999999        688899


Q ss_pred             EEecCC
Q psy11609         70 VSPYHD   75 (83)
Q Consensus        70 V~~a~g   75 (83)
                      |..|.-
T Consensus       106 v~~a~p  111 (114)
T 1x5o_A          106 CKFSGP  111 (114)
T ss_dssp             EEECCC
T ss_pred             EEccCC
Confidence            999873

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.79  E-value=5.3e-20  Score=110.88  Aligned_cols=73  Identities=21%  Similarity=0.183  Sum_probs=68.2

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      .+|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++.|||..+.|+.|+|..+
T Consensus         6 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~   82 (85)
T 1x4e_A            6 SGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP   82 (85)
T ss_dssp             CEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence            389999999999999999999999999999999875    4899999999999999999999999999999988643

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=99.79  E-value=7.6e-19  Score=117.99  Aligned_cols=75  Identities=13%  Similarity=0.239  Sum_probs=69.2

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceE-EEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRY-GLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~-afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g~   76 (83)
                      +.|||++|+....+++|++.|++||+|.+|+|+.+ ++|| |||+|.++++|++|+++|||..|+|  |+|+|+.+.-.
T Consensus        29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~  106 (130)
T 3zzy_A           29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT  106 (130)
T ss_dssp             EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred             EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence            35899999999999999999999999999998875 4687 9999999999999999999999999  99999999754

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=99.79  E-value=2.7e-19  Score=127.35  Aligned_cols=75  Identities=16%  Similarity=0.203  Sum_probs=71.0

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCC--ceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHG--KVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG--~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      .+|||++|+.++.+++|++.|++||  +|.+|+|+.|.    ++|||||+|.++++|++|+..|||..|.|++|.|..|.
T Consensus        69 ~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~  148 (229)
T 3q2s_C           69 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN  148 (229)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence            3799999999999999999999999  99999999985    58999999999999999999999999999999999886


Q ss_pred             C
Q psy11609         75 D   75 (83)
Q Consensus        75 g   75 (83)
                      .
T Consensus       149 ~  149 (229)
T 3q2s_C          149 K  149 (229)
T ss_dssp             H
T ss_pred             C
Confidence            3

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=99.79  E-value=5.9e-19  Score=114.33  Aligned_cols=73  Identities=18%  Similarity=0.223  Sum_probs=69.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||.|.+|.++.+.    ++|||||.|.++++|.+|+..|||..+.|++|.|..|+
T Consensus        89 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~  165 (166)
T 3md3_A           89 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA  165 (166)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred             eEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecC
Confidence            79999999999999999999999999999999874    58999999999999999999999999999999999986

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=99.79  E-value=7.2e-20  Score=107.85  Aligned_cols=71  Identities=11%  Similarity=0.179  Sum_probs=66.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      ||||++++.+..+++|++.|++||+|.+|.++.+.    ++|||||.|.++++|++|+.. +|..+.|++|.|..|
T Consensus         1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a   75 (75)
T 1iqt_A            1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA   75 (75)
T ss_dssp             CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred             CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence            79999999999999999999999999999999874    589999999999999999985 899999999999875

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=99.79  E-value=6.4e-19  Score=112.01  Aligned_cols=74  Identities=19%  Similarity=0.259  Sum_probs=69.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..+ |..|.|++|.|..+...
T Consensus        27 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~  104 (109)
T 2rs2_A           27 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPR  104 (109)
T ss_dssp             CEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCC
Confidence            79999999999999999999999999999999975    5899999999999999999987 59999999999999743

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.79  E-value=2.3e-19  Score=114.59  Aligned_cols=62  Identities=23%  Similarity=0.302  Sum_probs=56.8

Q ss_pred             chhhHHHHHh-ccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609         12 SLKDGLYHEY-KKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus        12 ~~~d~L~~eF-~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      .+.++|+++| ++||+|.+|+|+.+.   ++|||||.|.++++|++|+++|||+.|.||+|.|+.+
T Consensus        38 ~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s  103 (104)
T 1jmt_A           38 EFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             HHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence            4556777888 999999999999875   6999999999999999999999999999999999876

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=2.9e-19  Score=113.98  Aligned_cols=74  Identities=22%  Similarity=0.108  Sum_probs=69.6

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCce-eEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKV-SWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~I-tsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      .+|||++|+.++.+++|++.|++||.| .+|+|+.|.   ++|||||+|.++++|++|+.. ||..|.|++|.|..+..
T Consensus        16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~   93 (114)
T 2cpy_A           16 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTL   93 (114)
T ss_dssp             CEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred             cEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence            389999999999999999999999999 999999876   689999999999999999988 99999999999998863

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=99.78  E-value=3.4e-19  Score=108.78  Aligned_cols=72  Identities=15%  Similarity=0.150  Sum_probs=68.3

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      .+|||++++.+..+++|++.|++| +|.+|+|.  .++|||||.|.++++|++|++.|||..+.|++|.|+.+..
T Consensus         6 ~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~   77 (88)
T 1wg1_A            6 SGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT   77 (88)
T ss_dssp             CCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence            379999999999999999999999 99999995  6899999999999999999999999999999999999874

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=99.78  E-value=6.2e-19  Score=121.83  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=71.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||.|.++++|++|++.+||..+.|++|.|..+...
T Consensus        17 tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~   95 (213)
T 4f02_A           17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD   95 (213)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccc
Confidence            89999999999999999999999999999999875    5899999999999999999999999999999999988754

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=4.1e-19  Score=112.33  Aligned_cols=77  Identities=10%  Similarity=0.059  Sum_probs=69.9

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      .+|||++|+.++.+++|++.|++||.| +|+|+.+.   ++|||||+|.++++|++|+ .+||..|.|++|.|..+..++
T Consensus        16 ~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~~   93 (102)
T 1wez_A           16 HCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTAG   93 (102)
T ss_dssp             CEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCCC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCCC
Confidence            379999999999999999999999955 89999876   5899999999999999999 589999999999999988665


Q ss_pred             cc
Q psy11609         78 FE   79 (83)
Q Consensus        78 ~e   79 (83)
                      ..
T Consensus        94 ~~   95 (102)
T 1wez_A           94 TS   95 (102)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=1.6e-19  Score=110.59  Aligned_cols=72  Identities=17%  Similarity=0.150  Sum_probs=66.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCc-eeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC-ceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGK-VSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE-KHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~-Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng-~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.+..+++|++.|++||+ |..+.+.   ++|||||.|.++++|++|++.||| ..+.|++|.|..+...
T Consensus        10 ~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~   83 (93)
T 2cqh_A           10 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL---KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSK   83 (93)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE---ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc---CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCc
Confidence            7999999999999999999999999 7777763   589999999999999999999999 9999999999999853

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=99.78  E-value=5.6e-19  Score=118.83  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=70.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++|+.+..+++|+..|++||+|.+|.|+.+.    ++|||||+|.++++|++|+..|||..|.|++|.|..+.
T Consensus        74 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~  150 (165)
T 1rk8_A           74 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF  150 (165)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             EEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence            79999999999999999999999999999999875    48999999999999999999999999999999999987

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=99.78  E-value=4.3e-19  Score=113.75  Aligned_cols=70  Identities=16%  Similarity=0.224  Sum_probs=66.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCee-----eEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK-----IDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~-----i~V~~a~   74 (83)
                      +|||++|+.++.+++|++.|++||+|.+|+|+.+   |||||+|.++++|++|++.|||..|.|++     |.|..+.
T Consensus        18 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~   92 (115)
T 3beg_B           18 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG   92 (115)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCC
Confidence            7999999999999999999999999999999987   99999999999999999999999999999     7777765

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=99.78  E-value=2.4e-19  Score=118.25  Aligned_cols=75  Identities=21%  Similarity=0.193  Sum_probs=71.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.|..+...
T Consensus        49 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~  127 (135)
T 2lea_A           49 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG  127 (135)
T ss_dssp             CEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            79999999999999999999999999999999874    5899999999999999999999999999999999999843

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=6.2e-19  Score=110.88  Aligned_cols=76  Identities=13%  Similarity=0.027  Sum_probs=69.6

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeE-EEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSW-VKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Its-v~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      .+|||++|+.++.+++|++.|++||.|.+ |.|+.+.   ++|||||.|.++++|++|+.. ||..+.|++|.|..+...
T Consensus        16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~   94 (104)
T 1wg5_A           16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRA   94 (104)
T ss_dssp             CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence            37999999999999999999999999997 8888764   589999999999999999998 999999999999998754


Q ss_pred             C
Q psy11609         77 D   77 (83)
Q Consensus        77 ~   77 (83)
                      +
T Consensus        95 ~   95 (104)
T 1wg5_A           95 E   95 (104)
T ss_dssp             T
T ss_pred             H
Confidence            4

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=1.5e-19  Score=116.60  Aligned_cols=75  Identities=19%  Similarity=0.204  Sum_probs=67.8

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      .+|||++|+.++.+++|++.|++||.|.++.++.+.    ++|||||+|.++++|++|+. |||..|.|++|.|..+...
T Consensus        26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~  104 (124)
T 1wel_A           26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKK  104 (124)
T ss_dssp             CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence            389999999999999999999999999985555543    58999999999999999999 9999999999999998743

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=4.8e-19  Score=111.81  Aligned_cols=76  Identities=9%  Similarity=0.098  Sum_probs=69.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCce----eEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKV----SWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~I----tsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||.|    ..++++...++|||||.|.++++|++|+..|||..|.|++|.|..+....
T Consensus        27 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~  106 (115)
T 2cpx_A           27 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK  106 (115)
T ss_dssp             EEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence            79999999999999999999999999    56777655579999999999999999999999999999999999998543

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.78  E-value=6.5e-19  Score=108.14  Aligned_cols=74  Identities=16%  Similarity=0.132  Sum_probs=66.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++++.+..+++|++.|++||+|..+ -....++|||||.|.++++|++|+..|||..+.|++|.|..+...
T Consensus        18 ~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~   91 (96)
T 1fjc_A           18 TLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK   91 (96)
T ss_dssp             EEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence            79999999999999999999999999877 222236999999999999999999999999999999999999744

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.78  E-value=1.6e-18  Score=107.73  Aligned_cols=74  Identities=15%  Similarity=0.186  Sum_probs=68.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+.  ++..|.|++|.|..+...+
T Consensus        17 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~   94 (103)
T 2cqg_A           17 DLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQ   94 (103)
T ss_dssp             CEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTC
T ss_pred             EEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCC
Confidence            79999999999999999999999999999999975    48999999999999999998  4789999999999998544

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.78  E-value=8.7e-19  Score=114.93  Aligned_cols=72  Identities=15%  Similarity=0.180  Sum_probs=68.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      +|||++++.+..+++|++.|++||+|.+|.++.+.    ++|||||.|.++++|.+|++.|||..+.|++|.|..|
T Consensus        96 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A  171 (172)
T 2g4b_A           96 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA  171 (172)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred             EEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence            79999999999999999999999999999999985    4899999999999999999999999999999999987

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=108.19  Aligned_cols=73  Identities=16%  Similarity=0.245  Sum_probs=66.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++||+|   +++.+.   ++|||||.|.++++|++|+..|||..|.|++|.|+.+..+.
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~   92 (101)
T 2fc9_A           17 TLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG   92 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence            79999999999999999999999988   455542   58999999999999999999999999999999999998543

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=99.77  E-value=9.2e-19  Score=114.78  Aligned_cols=74  Identities=12%  Similarity=0.162  Sum_probs=67.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEE--------EEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWV--------KIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP   72 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv--------~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~   72 (83)
                      +|||++|+.+..+++|+..|++||.|.+|        ++.... ++|||||+|.++++|++|+..|||..|.|++|.|..
T Consensus        47 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~  126 (143)
T 3egn_A           47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQF  126 (143)
T ss_dssp             EEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence            79999999999999999999999999874        334433 799999999999999999999999999999999999


Q ss_pred             cCC
Q psy11609         73 YHD   75 (83)
Q Consensus        73 a~g   75 (83)
                      |..
T Consensus       127 a~~  129 (143)
T 3egn_A          127 ARS  129 (143)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            974

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.4e-18  Score=106.97  Aligned_cols=72  Identities=14%  Similarity=0.236  Sum_probs=64.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++++.+..+++|+..|++||+|.+| ++.....+||||+|.++++|++|+. |||..|.|++|.|..+..
T Consensus        10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~   81 (94)
T 2e5g_A           10 SVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ   81 (94)
T ss_dssp             EEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence            89999999999999999999999999988 3332222299999999999999999 999999999999998873

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.77  E-value=1.1e-18  Score=117.94  Aligned_cols=76  Identities=14%  Similarity=0.239  Sum_probs=72.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||+++..+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|.+|+..|||..|.|++|.|..+..+.
T Consensus       127 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~  206 (216)
T 2qfj_A          127 RIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP  206 (216)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred             EEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence            79999999999999999999999999999999884    48999999999999999999999999999999999998654

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.5e-18  Score=112.03  Aligned_cols=71  Identities=15%  Similarity=0.223  Sum_probs=67.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++|+.++.+++|++.|+.| .|.+|.|+.|.   ++|||||+|.+++||++|+ .|||..|.||+|.|..+.
T Consensus        18 ~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~   91 (109)
T 2dnn_A           18 YVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT   91 (109)
T ss_dssp             EEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence            79999999999999999999999 89999999876   6899999999999999999 799999999999999886

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=99.77  E-value=4.4e-19  Score=118.67  Aligned_cols=73  Identities=12%  Similarity=0.020  Sum_probs=69.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCc---eeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGK---VSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~---Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.++.+++|++.|++||.   |.+|+|+.|.   ++|||||+|.++++|++|+. +||..|.|++|.|..+..
T Consensus        46 ~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~  124 (136)
T 2hgl_A           46 VVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHR  124 (136)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCH
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECCh
Confidence            7999999999999999999999999   8999999875   58999999999999999999 999999999999999864

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=99.77  E-value=1.1e-19  Score=112.73  Aligned_cols=73  Identities=21%  Similarity=0.177  Sum_probs=67.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.+..+++|++.|++||.|.+ .++.+.    ++|||||.|.++++|++|++ |||..|.|++|.|..+...
T Consensus        19 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~   95 (101)
T 1fj7_A           19 NLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR   95 (101)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence            7999999999999999999999999998 666653    68999999999999999998 9999999999999999854

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=99.77  E-value=1.3e-18  Score=104.64  Aligned_cols=68  Identities=15%  Similarity=0.288  Sum_probs=64.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccC----C-------ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKH----G-------KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV   70 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kf----G-------~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V   70 (83)
                      ||||++++.+..+++|++.|++|    |       +|.+++++.+  +|||||.|.++++|++|+ .|||..+.|++|.|
T Consensus         8 ~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V   84 (87)
T 2hzc_A            8 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI   84 (87)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEE
Confidence            79999999999999999999999    8       9999999874  899999999999999999 99999999999999


Q ss_pred             Ee
Q psy11609         71 SP   72 (83)
Q Consensus        71 ~~   72 (83)
                      +.
T Consensus        85 ~r   86 (87)
T 2hzc_A           85 RR   86 (87)
T ss_dssp             EC
T ss_pred             eC
Confidence            74

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.77  E-value=2.5e-18  Score=111.48  Aligned_cols=75  Identities=20%  Similarity=0.244  Sum_probs=70.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||.|.++++|++|++.+||..+.|++|.|..+...
T Consensus         4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~   82 (167)
T 1fxl_A            4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS   82 (167)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             eEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence            79999999999999999999999999999999976    4699999999999999999999999999999999998743

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.77  E-value=1.1e-18  Score=113.95  Aligned_cols=74  Identities=12%  Similarity=0.214  Sum_probs=69.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++ +||..+.|++|.|..|+..
T Consensus        89 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk  166 (167)
T 2cjk_A           89 KIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR  166 (167)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred             eEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence            79999999999999999999999999999999874    58999999999999999997 8999999999999998753

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.76  E-value=1.4e-18  Score=113.70  Aligned_cols=73  Identities=18%  Similarity=0.256  Sum_probs=68.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceec---CeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFF---GCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~---g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.+.   ++|||||+|.++++|.+|++.|||..+.   |++|.|..|+
T Consensus        97 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad  175 (175)
T 3nmr_A           97 KLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD  175 (175)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred             eEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence            79999999999999999999999999999999985   4899999999999999999999998776   4999999875

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.76  E-value=2.3e-18  Score=114.28  Aligned_cols=73  Identities=21%  Similarity=0.212  Sum_probs=67.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceE-EEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRY-GLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~-afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g~   76 (83)
                      .|||++|+....+++|++.|++||.|.+|+|+..  .|| |||.|.++++|++|+++|||..|+|  ++|.|+.|..+
T Consensus        27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~  102 (124)
T 2e5i_A           27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT  102 (124)
T ss_dssp             EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred             EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence            3789999999999999999999999999999764  486 9999999999999999999999988  79999999754

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=99.76  E-value=4e-19  Score=112.23  Aligned_cols=74  Identities=8%  Similarity=0.047  Sum_probs=69.4

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCc---eeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGK---VSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~---Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      .+|||++|+.++.+++|++.|++||.   |.+|+|+.+.   ++|||||+|.++++|++|+. +||..+.|++|.|..+.
T Consensus        12 ~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~   90 (107)
T 2lmi_A           12 FLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEIN   90 (107)
T ss_dssp             CEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECC
T ss_pred             cEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECC
Confidence            37999999999999999999999998   8999999876   68999999999999999999 99999999999999886


Q ss_pred             C
Q psy11609         75 D   75 (83)
Q Consensus        75 g   75 (83)
                      .
T Consensus        91 ~   91 (107)
T 2lmi_A           91 N   91 (107)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.76  E-value=2.3e-18  Score=112.23  Aligned_cols=74  Identities=18%  Similarity=0.223  Sum_probs=70.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++||+|.+|+++.+.    ++|||||.|.++++|++|++.+||..+.|++|.|..+..
T Consensus         5 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~   82 (168)
T 1b7f_A            5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARP   82 (168)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCC
Confidence            79999999999999999999999999999999875    478999999999999999999999999999999998874

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=99.76  E-value=2.2e-18  Score=107.01  Aligned_cols=72  Identities=24%  Similarity=0.356  Sum_probs=67.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.   ++|||||.|.++++|++|+.  ||..+.|++|.|..+..
T Consensus        11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~   85 (102)
T 2xs2_A           11 TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR   85 (102)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence            79999999999999999999999999999999976   58999999999999999998  99999999999988873

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.75  E-value=4.2e-18  Score=113.82  Aligned_cols=75  Identities=15%  Similarity=0.145  Sum_probs=71.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|.+|+..|||..|.|++|.|..+..+
T Consensus       116 ~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~  194 (198)
T 2yh0_A          116 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG  194 (198)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            79999999999999999999999999999999875    4899999999999999999999999999999999999754

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=99.75  E-value=2.9e-18  Score=132.15  Aligned_cols=75  Identities=16%  Similarity=0.249  Sum_probs=71.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++|+.++.+++|...|++||+|.+|+|+.+.    ++|||||+|.++++|.+|+..|||..|.|++|.|+++++.
T Consensus       104 ~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~  182 (437)
T 3pgw_S          104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR  182 (437)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            89999999999999999999999999999999874    5999999999999999999999999999999999999854

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=99.61  E-value=7.7e-20  Score=116.31  Aligned_cols=75  Identities=19%  Similarity=0.187  Sum_probs=70.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeE--------EEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSW--------VKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Its--------v~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      +|||++++.+..+++|++.|++||+|.+        |+|+.+.    ++|||||.|.++++|++|+..|||..|.|++|.
T Consensus         9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~   88 (116)
T 2lcw_A            9 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIK   88 (116)
Confidence            7999999999999999999999999999        8999874    589999999999999999999999999999999


Q ss_pred             EEecCCC
Q psy11609         70 VSPYHDV   76 (83)
Q Consensus        70 V~~a~g~   76 (83)
                      |..++..
T Consensus        89 V~~a~~~   95 (116)
T 2lcw_A           89 VSFATRR   95 (116)
Confidence            9999844

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=99.75  E-value=4.1e-18  Score=111.06  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=68.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a   73 (83)
                      +|||.+++.+..+++|++.|++||+|.+++++.+.    ++|||||.|.++++|.+|++.|||..+.|  ++|.|..|
T Consensus        91 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A  168 (168)
T 1b7f_A           91 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA  168 (168)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             CEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence            79999999999999999999999999999999876    37999999999999999999999999988  99999875

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=99.74  E-value=3.8e-18  Score=117.39  Aligned_cols=74  Identities=14%  Similarity=0.082  Sum_probs=70.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++|+.+..+++|++.|++||+|.+|.|+.+.   ++|||||.|.++++|++|+..+||..|.|++|.|+.|..
T Consensus        90 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~  166 (177)
T 2f3j_A           90 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS  166 (177)
T ss_dssp             EEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence            79999999999999999999999999999999875   689999999999999999999999999999999999874

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=99.74  E-value=9.3e-19  Score=117.56  Aligned_cols=75  Identities=11%  Similarity=0.040  Sum_probs=69.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF   78 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~   78 (83)
                      +|||++|+.++.+++|++.|++|| |.+|+|+.|.   ++|||||+|.++++|++|+ .+|+..|.|++|.|..++.++.
T Consensus        48 ~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~  125 (139)
T 2hgn_A           48 CVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA  125 (139)
T ss_dssp             CEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence            799999999999999999999999 6789999876   6899999999999999999 8999999999999999986654

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.74  E-value=1e-17  Score=111.82  Aligned_cols=74  Identities=14%  Similarity=0.249  Sum_probs=68.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+.. +|..+.|++|.|..+...
T Consensus        15 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~   92 (196)
T 1l3k_A           15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR   92 (196)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCc
Confidence            79999999999999999999999999999999975    488999999999999999976 999999999999998743

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=99.74  E-value=1.1e-17  Score=111.63  Aligned_cols=75  Identities=15%  Similarity=0.301  Sum_probs=68.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|.+|+.. +|..|.|++|.|..|...+
T Consensus       106 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~  184 (196)
T 1l3k_A          106 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ  184 (196)
T ss_dssp             EEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred             eEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence            79999999999999999999999999999999875    489999999999999999976 8999999999999998543

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=99.74  E-value=6.7e-18  Score=114.14  Aligned_cols=75  Identities=11%  Similarity=0.179  Sum_probs=69.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++.+||..|.|++|.|..+...
T Consensus        30 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~  108 (216)
T 2qfj_A           30 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNI  108 (216)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCc
Confidence            79999999999999999999999999999999875    6999999999999999999999999999999999887644

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=5.3e-18  Score=108.10  Aligned_cols=75  Identities=13%  Similarity=0.264  Sum_probs=66.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhc---CCc--------ee
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGS---HEK--------HF   63 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~---ng~--------~~   63 (83)
                      +|||++|+.+..+++|++.|++||+|. +.++.+.       ++|||||+|.++++|++|+++|   ||+        .+
T Consensus        10 ~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~~~~~~~   88 (114)
T 2dnl_A           10 KVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLYLCVSSPTI   88 (114)
T ss_dssp             CEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEEEEECCSSS
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEEEeccCCCc
Confidence            799999999999999999999999999 8887753       5899999999999999999999   887        45


Q ss_pred             cCeeeEEEecCCCC
Q psy11609         64 FGCKIDVSPYHDVD   77 (83)
Q Consensus        64 ~g~~i~V~~a~g~~   77 (83)
                      .++++.|.+|.-.+
T Consensus        89 ~~~~~~v~p~~~~d  102 (114)
T 2dnl_A           89 KDKPVQIRPWNLSD  102 (114)
T ss_dssp             CSEEEEEECCCCCC
T ss_pred             CCCeeeccCCcccC
Confidence            67888888887433

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=8.5e-18  Score=104.10  Aligned_cols=72  Identities=18%  Similarity=0.288  Sum_probs=65.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++|+.+..+++|++.|++|+   +|+++.+.    ++|||||+|.++++|++|++.|||..|.|++|.|..+...
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~   92 (102)
T 2fc8_A           17 TLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK   92 (102)
T ss_dssp             SEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred             EEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence            799999999999999999999886   46666654    4799999999999999999999999999999999999853

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=99.73  E-value=6.7e-18  Score=110.40  Aligned_cols=75  Identities=17%  Similarity=0.208  Sum_probs=69.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC------CceEEEEEeCCchHHHHHHhhcCCceec---CeeeEEEe
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG------GDRYGLVCFKKADDAEKAILGSHEKHFF---GCKIDVSP   72 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~------~~g~afV~F~~pEdA~~A~~~~ng~~~~---g~~i~V~~   72 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.+.      ++|||||.|.++++|++|++.+||..+.   ++++.|..
T Consensus         5 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~   84 (175)
T 3nmr_A            5 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP   84 (175)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc
Confidence            79999999999999999999999999999999984      5789999999999999999999998876   78999988


Q ss_pred             cCCC
Q psy11609         73 YHDV   76 (83)
Q Consensus        73 a~g~   76 (83)
                      ++..
T Consensus        85 ~~~~   88 (175)
T 3nmr_A           85 ADSE   88 (175)
T ss_dssp             CGGG
T ss_pred             cccc
Confidence            7743

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.73  E-value=3.7e-18  Score=115.15  Aligned_cols=73  Identities=18%  Similarity=0.229  Sum_probs=69.7

Q ss_pred             eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++++. +..+++|++.|++||+|.+|+|+.+. +|||||.|.++++|++|++.+||..+.|++|.|..+..
T Consensus         5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~   78 (198)
T 1qm9_A            5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH   78 (198)
T ss_dssp             EEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence            799999999 89999999999999999999999876 89999999999999999999999999999999998874

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.73  E-value=1.5e-17  Score=117.66  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=69.6

Q ss_pred             eEeeeecCCcchhhHHH----HHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLY----HEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~----~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++|+.+..+++|+    +.|++||+|.+|+|+++. ++|||||+|.++++|++|++.|||..|.|++|.|..+..
T Consensus        11 ~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~   89 (282)
T 3pgw_A           11 TIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT   89 (282)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEecc
Confidence            79999999999999965    899999999999999865 689999999999999999999999999999999999864

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.72  E-value=7.8e-18  Score=117.42  Aligned_cols=73  Identities=18%  Similarity=0.229  Sum_probs=69.8

Q ss_pred             eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++. +..+++|++.|++||+|.+|+|+.+. +|||||.|.++++|++|++.+||..+.|++|.|..+..
T Consensus        36 ~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~  109 (229)
T 2adc_A           36 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH  109 (229)
T ss_dssp             EEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred             EEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence            799999999 89999999999999999999999976 89999999999999999999999999999999998874

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.72  E-value=2.4e-17  Score=117.05  Aligned_cols=74  Identities=18%  Similarity=0.225  Sum_probs=69.9

Q ss_pred             eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||.+++.+ ..+++|++.|++||.|.+|+|+.+.     ++|||||.|.++++|.+|+ .|||..|.|++|.|..++.
T Consensus       212 ~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~  290 (292)
T 2ghp_A          212 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADK  290 (292)
T ss_dssp             EEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCC
T ss_pred             eEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecC
Confidence            7999999999 9999999999999999999999864     4899999999999999999 9999999999999999985


Q ss_pred             C
Q psy11609         76 V   76 (83)
Q Consensus        76 ~   76 (83)
                      .
T Consensus       291 k  291 (292)
T 2ghp_A          291 K  291 (292)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.72  E-value=1.8e-17  Score=109.40  Aligned_cols=73  Identities=16%  Similarity=0.146  Sum_probs=66.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEecc-CCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ-GGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d-~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||.|..+  ..+ .++|||||+|.++++|.+|+..|||..|.|++|.|..|...
T Consensus       101 ~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k  174 (175)
T 1fje_B          101 TLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK  174 (175)
T ss_dssp             EEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence            79999999999999999999999999876  222 37999999999999999999999999999999999999743

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.72  E-value=8.2e-18  Score=102.19  Aligned_cols=73  Identities=16%  Similarity=0.132  Sum_probs=63.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+ ++|||||+|.++++|++|...  +..+.|++|.|..+....
T Consensus         7 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~   79 (88)
T 1wf0_A            7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH   79 (88)
T ss_dssp             EEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence            7999999999999999999999999999999886 899999999999999865322  345599999999887543

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=99.72  E-value=1.2e-17  Score=121.51  Aligned_cols=71  Identities=15%  Similarity=0.251  Sum_probs=67.8

Q ss_pred             eEeeeecCCcc---------hhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee---------
Q psy11609          2 ALFIYVVSDTS---------LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF---------   63 (83)
Q Consensus         2 ~lfv~k~~d~~---------~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~---------   63 (83)
                      ||||++|+.+.         ++++|+..|++||+|.+|+|+.  ++|||||+|.+.++|+.|+++|||+.|         
T Consensus       136 tLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~  213 (240)
T 3u1l_A          136 TLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWD  213 (240)
T ss_dssp             EEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGG
T ss_pred             eeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC--CCCEEEEEeCCHHHHHHHHHHhCCCEEecccccccc
Confidence            89999999887         7899999999999999999996  689999999999999999999999999         


Q ss_pred             ---cCeeeEEEecC
Q psy11609         64 ---FGCKIDVSPYH   74 (83)
Q Consensus        64 ---~g~~i~V~~a~   74 (83)
                         .|++|.|..|.
T Consensus       214 ~~~~gr~L~V~wA~  227 (240)
T 3u1l_A          214 DRREGTGLLVKWAN  227 (240)
T ss_dssp             GGGGSCCCEEEECC
T ss_pred             ccCCCCEEEEEEcc
Confidence               89999999987

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=99.72  E-value=2e-17  Score=107.20  Aligned_cols=72  Identities=22%  Similarity=0.297  Sum_probs=66.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCee--eEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCK--IDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~--i~V~~a   73 (83)
                      +|||++++.+..+++|++.|++||+|.+++++.+.    ++|||||.|.++++|.+|++.|||..+.|++  |.|..|
T Consensus        90 ~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A  167 (167)
T 1fxl_A           90 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA  167 (167)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             cEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence            69999999999999999999999999999999876    4899999999999999999999999999964  888765

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.71  E-value=2.9e-17  Score=116.26  Aligned_cols=76  Identities=13%  Similarity=0.098  Sum_probs=70.8

Q ss_pred             eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||.+++.+ +.+++|++.|++||.|.+|+|+.+.   ++|||||.|.++++|.+|+..|||..|.|++|.|..++..+
T Consensus       186 ~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~  265 (284)
T 3smz_A          186 CLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP  265 (284)
T ss_dssp             EEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred             EEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence            7999999999 5889999999999999999999975   58999999999999999999999999999999999998544

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=99.71  E-value=3e-17  Score=116.11  Aligned_cols=72  Identities=13%  Similarity=0.070  Sum_probs=68.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec-CeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF-GCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~-g~~i~V~~a~   74 (83)
                      +|||+++..+..+++|++.|++||.|.+|+|+.+. +|||||.|.++++|.+|+..|||..|. |++|.|+.+.
T Consensus       209 ~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak  281 (282)
T 3pgw_A          209 ILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK  281 (282)
T ss_pred             EEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence            69999999999999999999999999999999654 689999999999999999999999999 9999999874

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=8.1e-18  Score=110.85  Aligned_cols=73  Identities=11%  Similarity=0.059  Sum_probs=67.1

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCce----eEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKV----SWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~I----tsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      .+|||++|+.++.+++|++.|++||+|    .+|.|+.+.   ++|||||+|.++++|++|+.. ||+.|.||+|.|..+
T Consensus        24 ~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a  102 (123)
T 2dha_A           24 VIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRS  102 (123)
T ss_dssp             CEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEEC
Confidence            379999999999999999999999986    689999865   589999999999999999986 999999999999887


Q ss_pred             C
Q psy11609         74 H   74 (83)
Q Consensus        74 ~   74 (83)
                      .
T Consensus       103 ~  103 (123)
T 2dha_A          103 T  103 (123)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=99.70  E-value=4.8e-17  Score=112.96  Aligned_cols=73  Identities=12%  Similarity=0.102  Sum_probs=67.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.++.+++|.+.|++||+|.+|.|+++.   ++|||||+|.++++|++|+..++ ..+.|++|.|..++.
T Consensus       111 ~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~  186 (193)
T 2voo_A          111 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD  186 (193)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred             EEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence            79999999999999999999999999999999865   58999999999999999997765 589999999998764

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=99.70  E-value=2.4e-17  Score=109.36  Aligned_cols=72  Identities=14%  Similarity=0.032  Sum_probs=66.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCcee--EEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVS--WVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~It--sv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.++.+++|++.|++|| |.  +|+|+.|.   ++|||||+|.++|+|++|+.. +++.|.||+|.|..+..
T Consensus        44 ~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~  120 (126)
T 2hgm_A           44 FVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQ  120 (126)
T ss_dssp             EEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred             EEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence            799999999999999999999995 66  89999876   689999999999999999985 78999999999998863

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=3.2e-17  Score=106.10  Aligned_cols=68  Identities=24%  Similarity=0.276  Sum_probs=61.2

Q ss_pred             e-EeeeecCCcchhhH----HHHHhccC-CceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 A-LFIYVVSDTSLKDG----LYHEYKKH-GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~-lfv~k~~d~~~~d~----L~~eF~kf-G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      | |||.+|+.+..++.    |++.|++| |+|.+|      ..|+|||.|.+.|+|++|+++|||..++||||+|+.|+.
T Consensus        10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~   83 (96)
T 2diu_A           10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPK   83 (96)
T ss_dssp             EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCC
T ss_pred             eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCC
Confidence            5 88999998887666    77899999 599988      239999999999999999999999999999999999984

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=99.69  E-value=1.3e-16  Score=113.24  Aligned_cols=73  Identities=19%  Similarity=0.235  Sum_probs=68.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.+.  ++|||||.|.++++|++|+ .+||..+.|++|.|..++.
T Consensus        43 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~  117 (292)
T 2ghp_A           43 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHLTE  117 (292)
T ss_dssp             EEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEECCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEECCC
Confidence            89999999999999999999999999999999976  5899999999999999999 5999999999999988753

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=99.68  E-value=7.5e-17  Score=105.21  Aligned_cols=72  Identities=21%  Similarity=0.294  Sum_probs=66.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|+..  +..+.|++|.|..+..
T Consensus         5 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~   80 (167)
T 2cjk_A            5 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIP   80 (167)
T ss_dssp             EEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccc
Confidence            79999999999999999999999999999999875    589999999999999999985  5799999999988753

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=99.68  E-value=3.9e-17  Score=110.12  Aligned_cols=73  Identities=15%  Similarity=0.238  Sum_probs=68.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec-CeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF-GCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~-g~~i~V~~a~g   75 (83)
                      +|||++++.+..+++|++.|++|| +|.+|+|+.+ ++|||||.|.++++|.+|+..|||..+. |++|.|..+..
T Consensus       122 ~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~  196 (198)
T 1qm9_A          122 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS  196 (198)
T ss_dssp             EEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence            699999999999999999999999 9999999775 4899999999999999999999999999 99999998864

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.68  E-value=1.2e-16  Score=113.49  Aligned_cols=71  Identities=14%  Similarity=0.116  Sum_probs=68.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++++.+..+++|++.|++||+|.+|++++  ++|||||.|.++++|++|+..+||..+.|++|.|..+.
T Consensus        24 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~   94 (261)
T 3sde_A           24 RLFVGNLPTDITEEDFKRLFERYGEPSEVFINR--DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT   94 (261)
T ss_dssp             EEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence            799999999999999999999999999999976  58999999999999999999999999999999999886

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=99.68  E-value=1.2e-16  Score=108.96  Aligned_cols=74  Identities=18%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             CeEeeeec----CCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCC----chH----HHHHHh--hcCCce
Q psy11609          1 MALFIYVV----SDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKK----ADD----AEKAIL--GSHEKH   62 (83)
Q Consensus         1 ~~lfv~k~----~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~----pEd----A~~A~~--~~ng~~   62 (83)
                      |.|||+++    +.++.++.|+..|+.||+|.+|+++.|+    |+|||||.|.+    |++    |.+|+.  .+||..
T Consensus         3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~   82 (136)
T 2j8a_A            3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF   82 (136)
T ss_dssp             CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred             cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence            57999999    9999999999999999999999999998    69999999997    777    799988  889999


Q ss_pred             ecCeeeEEEecC
Q psy11609         63 FFGCKIDVSPYH   74 (83)
Q Consensus        63 ~~g~~i~V~~a~   74 (83)
                      |.|++|.|.+-.
T Consensus        83 I~Gr~irV~ln~   94 (136)
T 2j8a_A           83 IMGFKFEVILNK   94 (136)
T ss_dssp             ETTEEEEEEECC
T ss_pred             ecCcEEEEEECc
Confidence            999999999865

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=99.67  E-value=2.1e-16  Score=111.86  Aligned_cols=76  Identities=13%  Similarity=0.079  Sum_probs=71.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|.+|+..+||..+.|++|.|..+....
T Consensus        97 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~  176 (284)
T 3smz_A           97 LLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQ  176 (284)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGGG
T ss_pred             EEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence            79999999999999999999999999999999876    48999999999999999999999999999999999988543

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=99.66  E-value=2e-16  Score=110.22  Aligned_cols=73  Identities=15%  Similarity=0.238  Sum_probs=68.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCC-ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec-CeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHG-KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF-GCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG-~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~-g~~i~V~~a~g   75 (83)
                      +|||++++.+..+++|++.|++|| +|.+|+|+.+ ++|||||+|.++++|.+|+..|||..+. |++|.|..+.-
T Consensus       153 ~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~  227 (229)
T 2adc_A          153 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS  227 (229)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             EEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence            699999999999999999999999 9999999764 5899999999999999999999999999 99999998864

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.66  E-value=1.3e-16  Score=110.80  Aligned_cols=70  Identities=26%  Similarity=0.216  Sum_probs=62.7

Q ss_pred             eecCCcchhhHHHHHhccCCceeEEEEecc--------CCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          6 YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ--------GGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         6 ~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d--------~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ....++.++++|+++|++||+|.+|+|+.+        .++|++||.|+++++|++|+++|||+++.||+|.|+.++.
T Consensus       135 ~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~  212 (222)
T 3dxb_A          135 PKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ  212 (222)
T ss_dssp             GGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred             HHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence            345567788899999999999999999854        3579999999999999999999999999999999999873

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=99.66  E-value=3.3e-16  Score=102.52  Aligned_cols=72  Identities=17%  Similarity=0.299  Sum_probs=66.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccC----C-------ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKH----G-------KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV   70 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kf----G-------~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V   70 (83)
                      +|||++++.+..+++|++.|++|    |       +|.++++..  ++|||||.|.++|+|++|+ .+||..+.|++|.|
T Consensus         6 ~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~--~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v   82 (172)
T 2g4b_A            6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI   82 (172)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET--TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred             EEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC--CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeee
Confidence            79999999999999999999999    6       888888865  6899999999999999999 99999999999999


Q ss_pred             EecCCC
Q psy11609         71 SPYHDV   76 (83)
Q Consensus        71 ~~a~g~   76 (83)
                      ..+...
T Consensus        83 ~~~~~~   88 (172)
T 2g4b_A           83 RRPHDY   88 (172)
T ss_dssp             ECCSSC
T ss_pred             cCCccc
Confidence            987743

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=99.65  E-value=2.5e-16  Score=111.84  Aligned_cols=76  Identities=20%  Similarity=0.227  Sum_probs=69.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcC-Cceec---CeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSH-EKHFF---GCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~n-g~~~~---g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.   ++|||||.|.++++|.+|+..|| |..+.   |++|.|.++.
T Consensus        98 ~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~  177 (261)
T 3sde_A           98 ALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPME  177 (261)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECC
T ss_pred             cccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecc
Confidence            79999999999999999999999999999999985   58999999999999999999995 55555   9999999998


Q ss_pred             CCC
Q psy11609         75 DVD   77 (83)
Q Consensus        75 g~~   77 (83)
                      ..+
T Consensus       178 ~~~  180 (261)
T 3sde_A          178 QFD  180 (261)
T ss_dssp             CEE
T ss_pred             ccC
Confidence            654

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=99.65  E-value=5.6e-16  Score=103.44  Aligned_cols=71  Identities=17%  Similarity=0.308  Sum_probs=65.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccC----C-------ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKH----G-------KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV   70 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kf----G-------~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V   70 (83)
                      ||||++|+.+..+++|++.|++|    |       .|.++++..  ++|||||.|.++++|++|+ .+||..|.|++|.|
T Consensus         6 ~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~--~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v   82 (198)
T 2yh0_A            6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ--DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKI   82 (198)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET--TTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEE
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC--CCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEE
Confidence            89999999999999999999999    5       677777654  6899999999999999999 89999999999999


Q ss_pred             EecCC
Q psy11609         71 SPYHD   75 (83)
Q Consensus        71 ~~a~g   75 (83)
                      ..+..
T Consensus        83 ~~~~~   87 (198)
T 2yh0_A           83 RRPHD   87 (198)
T ss_dssp             ECCCC
T ss_pred             eCCCC
Confidence            98864

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=99.64  E-value=3e-16  Score=109.48  Aligned_cols=72  Identities=11%  Similarity=0.110  Sum_probs=65.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCce--eEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCe----eeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKV--SWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGC----KIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~I--tsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~----~i~V~~a   73 (83)
                      ||||.+|+++..+++|++.|++||.|  ++|+|+.+.  ++|||||+|.++|+|.+|+..|||..|.|+    |+.|-++
T Consensus       125 ~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~  204 (205)
T 3tyt_A          125 VLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC  204 (205)
T ss_dssp             EEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred             eEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence            69999999999999999999999999  899999875  469999999999999999999999999887    6776553

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=8.3e-16  Score=98.29  Aligned_cols=65  Identities=18%  Similarity=0.116  Sum_probs=58.0

Q ss_pred             CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609         10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus        10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      ++..+++|++.|++||+|.+|.|++ .++|||||+|.++++|++|++.++|  +.|++|.|..+..+.
T Consensus        27 ~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~   91 (100)
T 2d9o_A           27 GGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP   91 (100)
T ss_dssp             CSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred             CCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence            4567888999999999999999984 5899999999999999999999766  689999999988554

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=99.63  E-value=5.5e-16  Score=117.62  Aligned_cols=71  Identities=13%  Similarity=0.231  Sum_probs=63.5

Q ss_pred             eEeeee--cCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceec---Ce--eeEEEecC
Q psy11609          2 ALFIYV--VSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFF---GC--KIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k--~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~---g~--~i~V~~a~   74 (83)
                      +|||++  ++.++.+++|++.|++||+|.+|++..  ++|||||+|+++|||++|+++|||+.+.   |+  +|+|..++
T Consensus        20 ~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~   97 (345)
T 3tht_A           20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE   97 (345)
T ss_dssp             EEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred             EEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence            799988  678999999999999999999987754  7999999999999999999999999884   44  79998875

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=99.63  E-value=1e-16  Score=105.76  Aligned_cols=74  Identities=20%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEecc---CCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQ---GGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d---~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.+..+++|++.|++||.|.++.|...   .++|||||.|.++++|++|+ +|||..+.|++|.|..+...
T Consensus        15 ~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~   91 (175)
T 1fje_B           15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGR   91 (175)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCc
Confidence            7999999999999999999999999876333221   26899999999999999999 69999999999999998853

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=8.4e-14  Score=89.24  Aligned_cols=69  Identities=17%  Similarity=0.314  Sum_probs=59.9

Q ss_pred             eEeeeecC--------CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVS--------DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~--------d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      |++|.-.+        |+.+-.+|.+.|+.||+|.+|+|+.|.    +||+|++.+.|.+|++ |||..++||+|+|.++
T Consensus         9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lk   83 (91)
T 2dnr_A            9 TVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELLNRTITIALK   83 (91)
T ss_dssp             EEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEETTEEEEEEEC
T ss_pred             eEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeC
Confidence            56665543        445557799999999999999999875    9999999999999998 9999999999999998


Q ss_pred             CC
Q psy11609         74 HD   75 (83)
Q Consensus        74 ~g   75 (83)
                      ..
T Consensus        84 t~   85 (91)
T 2dnr_A           84 SP   85 (91)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.36  E-value=1.6e-12  Score=86.43  Aligned_cols=73  Identities=15%  Similarity=0.265  Sum_probs=66.7

Q ss_pred             eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCC-chHHHHHHhhcC--CceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKK-ADDAEKAILGSH--EKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~-pEdA~~A~~~~n--g~~~~g~~i~V~~a~g~   76 (83)
                      -|+|++++++ +.+++|+..|++||+|..|.++.+..  .|||.|.+ +++|.+|+..+|  |..|.|..+.+++..|.
T Consensus        20 il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~Ge   96 (121)
T 1owx_A           20 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGE   96 (121)
T ss_dssp             EEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHH
T ss_pred             EEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCH
Confidence            4899999999 99999999999999999999998766  59999999 689999999995  78999999999998873

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.35  E-value=1.4e-12  Score=84.11  Aligned_cols=67  Identities=18%  Similarity=0.202  Sum_probs=58.1

Q ss_pred             eEeeeecC---------CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609          2 ALFIYVVS---------DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP   72 (83)
Q Consensus         2 ~lfv~k~~---------d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~   72 (83)
                      |++|.-++         |+.+-.+|.+.|+.||+|..|++..|.    +||+|++.++|.+|+. |||..+.||+|+|.+
T Consensus        17 Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~   91 (95)
T 1ufw_A           17 TVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVKGRAVKISG   91 (95)
T ss_dssp             EEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEETTEEEEEEC
T ss_pred             eEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeCCeEEEEec
Confidence            66776543         444556799999999999999999986    9999999999999998 999999999999986


Q ss_pred             c
Q psy11609         73 Y   73 (83)
Q Consensus        73 a   73 (83)
                      -
T Consensus        92 k   92 (95)
T 1ufw_A           92 P   92 (95)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.40  E-value=2.7e-06  Score=55.44  Aligned_cols=77  Identities=14%  Similarity=0.152  Sum_probs=62.6

Q ss_pred             eEeeeecCCcc-----hhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTS-----LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~-----~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||++..+..+.     ++..++..|..|+++.+-...+  |=|=..|.|.+||+|.+|...++|..|.|++|+|=.+|..
T Consensus         7 tLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk--SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~   84 (104)
T 1wey_A            7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL   84 (104)
T ss_dssp             EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred             eEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC--cceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCC
Confidence            67777774433     3456788999999999866555  6555699999999999999999999999999999999965


Q ss_pred             Cccc
Q psy11609         77 DFEL   80 (83)
Q Consensus        77 ~~e~   80 (83)
                      +.++
T Consensus        85 ~~~~   88 (104)
T 1wey_A           85 HIGS   88 (104)
T ss_dssp             SCCS
T ss_pred             CCcc
Confidence            5443

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=98.01  E-value=2e-05  Score=52.34  Aligned_cols=69  Identities=12%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccC-----CceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKH-----GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP   72 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kf-----G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~   72 (83)
                      ||=+..++|+..+.-++...++|     |+|+++.+..  ..+=|+|.|.+...|-+|.=++||..|.||+|+|..
T Consensus        23 tiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~p--DH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT   96 (117)
T 2l9w_A           23 LICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVS--DFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT   96 (117)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEET--TTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred             EEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEec--CCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence            34455677777777799999999     9999887766  466799999999999999999999999999999864

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=97.69  E-value=2.7e-05  Score=50.64  Aligned_cols=33  Identities=21%  Similarity=0.009  Sum_probs=28.4

Q ss_pred             EEEEeccC--CceEEEEEeCCchHHHHHHhhcCCc
Q psy11609         29 WVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEK   61 (83)
Q Consensus        29 sv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~   61 (83)
                      +++|+.+.  ++|||||+|.++++|++|+..+++.
T Consensus         2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~   36 (158)
T 2kn4_A            2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYAND   36 (158)
T ss_dssp             EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             cEEEEecCccccchhHHHHHHHHhHHHHHHhhccc
Confidence            37787776  6999999999999999999887753

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=97.65  E-value=0.00027  Score=46.81  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=46.5

Q ss_pred             hhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecC-eeeEEEec
Q psy11609         14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG-CKIDVSPY   73 (83)
Q Consensus        14 ~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g-~~i~V~~a   73 (83)
                      ...+-++|++||+|.+...  ....-+-.|.|+++.+|++|+.. ||+.|.| .-|=|.+.
T Consensus        37 ~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~   94 (119)
T 1wwh_A           37 ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPC   94 (119)
T ss_dssp             HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEEC
T ss_pred             HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEEC
Confidence            4557889999999997765  33567999999999999999966 9999975 66667664

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=97.43  E-value=6e-05  Score=48.88  Aligned_cols=44  Identities=18%  Similarity=0.043  Sum_probs=38.1

Q ss_pred             EEeccC--CceEEEEEeCCchHHHHHHhhc-CCceecCeeeEEEecCC
Q psy11609         31 KIIGQG--GDRYGLVCFKKADDAEKAILGS-HEKHFFGCKIDVSPYHD   75 (83)
Q Consensus        31 ~V~~d~--~~g~afV~F~~pEdA~~A~~~~-ng~~~~g~~i~V~~a~g   75 (83)
                      .+..+.  -+|+++|.|.++++|++|+.+| ||..++| +|.|..+..
T Consensus         4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~   50 (150)
T 2i2y_A            4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK   50 (150)
T ss_dssp             EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred             EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence            344443  4899999999999999999999 9999999 999998775

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=97.42  E-value=0.00016  Score=48.74  Aligned_cols=63  Identities=16%  Similarity=0.338  Sum_probs=46.7

Q ss_pred             cchhhHHHHHhccCCceeEEE-Eec--------------cC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609         11 TSLKDGLYHEYKKHGKVSWVK-IIG--------------QG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP   72 (83)
Q Consensus        11 ~~~~d~L~~eF~kfG~Itsv~-V~~--------------d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~   72 (83)
                      .+....+-.+|++||+|..-. +.+              -+   ...+--|+|.++.+|++|++. ||+.|.|.=|-|.+
T Consensus        17 ~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~P   95 (132)
T 3p3d_A           17 ETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIP   95 (132)
T ss_dssp             GGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEE
T ss_pred             HHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEE
Confidence            344455778999999997511 110              01   245779999999999999965 99999999888888


Q ss_pred             cC
Q psy11609         73 YH   74 (83)
Q Consensus        73 a~   74 (83)
                      ..
T Consensus        96 y~   97 (132)
T 3p3d_A           96 YT   97 (132)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}

Probab=96.80  E-value=0.0023  Score=41.38  Aligned_cols=53  Identities=15%  Similarity=0.299  Sum_probs=42.8

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH   59 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n   59 (83)
                      +|+...+.+--..+|.+.|+.||-|. |+=+.   +-.|||.|++|+.|..|+..++
T Consensus         8 V~~l~FP~ewKt~Di~~lFs~fggv~-I~Wid---DTsAlvvf~~~~~a~~al~~i~   60 (101)
T 3ctr_A            8 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWID---DTSAFVSLSQPEQVKIAVNTSK   60 (101)
T ss_dssp             EEEEECCTTCCHHHHHHHTTTSEEEE-EEEEE---TTEEEEEEEEECHHHHHHHHHT
T ss_pred             EEEEeCChhhhhHHHHHHHhccCCEE-EEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence            45666677777788999999999777 54444   4589999999999999998764

>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.69  E-value=0.011  Score=38.23  Aligned_cols=69  Identities=17%  Similarity=0.309  Sum_probs=56.0

Q ss_pred             CeEeeeecCCcchhhHHHHHhccC-----CceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKH-----GKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kf-----G~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +++-|.++.++.-++-|.=-|.+-     |.|.+|+...    +-|+|+|.+++.|++-+.. .--.|.|.+|.|.++-
T Consensus         9 ~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~   82 (104)
T 2dhx_A            9 VAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP   82 (104)
T ss_dssp             CEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred             cEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence            478888888877777788888872     8999888754    7899999999999999865 2357788999998865

>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*

Probab=96.65  E-value=0.0034  Score=40.54  Aligned_cols=53  Identities=15%  Similarity=0.302  Sum_probs=42.6

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSH   59 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~n   59 (83)
                      +|+...+.+--..+|.+.|+.||-|. |+=+.   +-.|||.|++|+.|..|+..++
T Consensus        18 Vf~l~FP~ewKt~DI~~lFs~fggv~-I~Wid---DTsAlvvf~~~~~a~~al~~i~   70 (100)
T 1whv_A           18 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWID---DTSAFVSLSQPEQVQIAVNTSK   70 (100)
T ss_dssp             EEEEECCTTCCHHHHHHHHTTTCSCC-CEEEE---TTEEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEeCChhhhhHHHHHHhhccCCEE-EEEEc---CCeEEEEecCHHHHHHHHHhcc
Confidence            45566677777788999999999887 54444   4589999999999999998764

>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}

Probab=95.51  E-value=0.01  Score=46.61  Aligned_cols=54  Identities=11%  Similarity=0.126  Sum_probs=36.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG   57 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~   57 (83)
                      ++||. -..+.-+.+|.+.|+.||+|+++.- +....-||.|+|.+.+.++.++..
T Consensus        55 sv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~-~~~~g~~~~vef~~~~~~~~~~~~  108 (464)
T 3pq1_A           55 TVLIH-CPEKISENKFLKYLSQFGPINNHFF-YESFGLYAVVEFCQKESIGSLQNG  108 (464)
T ss_dssp             EEEEE-ECCC---CHHHHHHGGGSCCCCEEE-ECSSSEEEEEECC---CCHHHHSS
T ss_pred             eEEEE-cCCCCCHHHHHHHHHhcCCcceEEE-EccCCeEEEEEeCCHHHHHHHHhc
Confidence            57887 4566777789999999999996543 322345999999999999977655

>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}

Probab=93.47  E-value=0.15  Score=39.96  Aligned_cols=53  Identities=15%  Similarity=0.274  Sum_probs=40.8

Q ss_pred             eeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCC
Q psy11609          4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHE   60 (83)
Q Consensus         4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng   60 (83)
                      |+.+.+...-..+|.+.|+.||.|. |+-+   ++-.|||.|+++|.|..++++++.
T Consensus       443 l~v~f~~~~~~~~i~~~fs~fg~v~-V~wi---ddt~a~V~~~~~~~a~~~l~~~~~  495 (507)
T 3d45_A          443 LHVTFPKEWKTSDLYQLFSAFGNIQ-ISWI---DDTSAFVSLSQPEQVQIAVNTSKY  495 (507)
T ss_dssp             EEEECCTTCCHHHHHHHGGGGCCCE-EEEC---SSSEEEEECSCHHHHHHHHHHHTT
T ss_pred             EEEeCCCCCCHHHHHHHHHhcCCEE-EEEE---cCCeEEEEECCHHHHHHHHHHHHh
Confidence            4445555555677999999999766 5433   455799999999999999999863

>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4

Probab=93.05  E-value=0.95  Score=28.04  Aligned_cols=62  Identities=13%  Similarity=0.067  Sum_probs=46.0

Q ss_pred             eeeecCCcchhhHHHHHhccCCceeEEEEec-cC-----CceEEEEEeCCchHHHHHHhhcCCceecC
Q psy11609          4 FIYVVSDTSLKDGLYHEYKKHGKVSWVKIIG-QG-----GDRYGLVCFKKADDAEKAILGSHEKHFFG   65 (83)
Q Consensus         4 fv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~-d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g   65 (83)
                      -|-+|...-.++.+.+..+....+....-+. +.     .-.-|||.|+++|++..-.+..+|..|-+
T Consensus         5 VIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D   72 (91)
T 1uw4_A            5 VIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD   72 (91)
T ss_dssp             EEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred             EEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence            3445556666666999999888776544322 21     24679999999999999999999998854

>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B

Probab=90.92  E-value=0.21  Score=28.95  Aligned_cols=44  Identities=11%  Similarity=0.126  Sum_probs=32.5

Q ss_pred             ceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609         26 KVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus        26 ~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      .|-.+.|    .+.|.||.-.... |++++..+++..+.|+++.|+.+.
T Consensus        32 ~IG~I~i----~d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~   75 (76)
T 2g0c_A           32 DIGIITI----MDNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN   75 (76)
T ss_dssp             GEEEEEE----CSSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred             hccEEEE----eCCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence            3445555    4569999987765 999999999999999999998874

>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}

Probab=83.02  E-value=1.4  Score=27.87  Aligned_cols=63  Identities=11%  Similarity=0.033  Sum_probs=41.2

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEE-EeccC-----CceEEEEEeCCchHHHHHHhhcCCceecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVK-IIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFG   65 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~-V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g   65 (83)
                      |-|-+|...-.++.+.+..+..=.+.+-. +.++.     .-.-|||.|+++||...-.+..+|..|-+
T Consensus        12 vVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D   80 (97)
T 2l08_A           12 VVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD   80 (97)
T ss_dssp             EEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence            44556666666777777665443322111 00111     24578999999999999999999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	83
d1weya_	104	d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)	3e-06
d2f9da1	114	d.58.7.1 (A:12-125) Pre-mRNA branch site protein p	5e-06
d1wf2a_	98	d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprot	3e-05
d2adba1	108	d.58.7.1 (A:177-284) Polypyrimidine tract-binding	1e-04
d2dita1	99	d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Huma	1e-04
d2cpja1	86	d.58.7.1 (A:65-150) Non-POU domain-containing octa	1e-04
d1cvja2	89	d.58.7.1 (A:91-179) Poly(A)-binding protein {Human	4e-04
d1p1ta_	104	d.58.7.1 (A:) Cleavage stimulation factor, 64 kda	5e-04
d1u6fa1	139	d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypa	5e-04
d1x4ga1	96	d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo s	5e-04
d1whwa_	99	d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm	6e-04
d2cqba1	89	d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomer	8e-04
d1no8a_	78	d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus muscu	0.001
d1fxla1	82	d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Hom	0.001
d2cpza1	102	d.58.7.1 (A:383-484) CUG triplet repeat RNA-bindin	0.002
d1cvja1	80	d.58.7.1 (A:11-90) Poly(A)-binding protein {Human	0.002
d2cpfa1	85	d.58.7.1 (A:362-446) Probable RNA-binding protein	0.003
d2cqga1	90	d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TD	0.004
d2u2fa_	85	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	0.004

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.4 bits (91), Expect = 3e-06
 Identities = 10/68 (14%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 7  VVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGC 66
          V S++  +      ++ + K +  +           + F     A  A L  H+  F G 
Sbjct: 17 VFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK 74

Query: 67 KIDVSPYH 74
          ++ +    
Sbjct: 75 EMKLYFAQ 82

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 5e-06
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 1/72 (1%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR-YGLVCFKKADDAEKAILGSHEK 61
          L+I  +      + +Y  + K+G +  +++      R    V ++   DA+ A       
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGF 69

Query: 62 HFFGCKIDVSPY 73
          +     + V  Y
Sbjct: 70 NVCNRYLVVLYY 81

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 3e-05
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 14 KDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS 71
          K  +   + K+GK+    +       +  V +    +A  A+ G   +   G  +D++
Sbjct: 30 KSDVEAIFSKYGKIVGCSVH----KGFAFVQYVNERNARAAVAGEDGRMIAGQVLDIN 83

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 1e-04
 Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 2/59 (3%)

Query: 15 DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAI--LGSHEKHFFGCKIDVS 71
          D L+  + K G V  +    +      L+ +     A+ A   L     +   C + + 
Sbjct: 22 DVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 80

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 1e-04
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 13 LKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP 72
          +++ L  E  K G++  + +  +  D    V F+  ++A+  I     + F G +I    
Sbjct: 32 IREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQA 91

Query: 73 YHDV 76
          +   
Sbjct: 92 WDGT 95

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (80), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
          LF+  +     ++ +   ++K+GK   V I       +G +  +    AE A +      
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMP 68

Query: 63 FFGCKIDVS 71
            G ++ V 
Sbjct: 69 LRGKQLRVR 77

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 4e-04
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKII--GQGGDRYGLVCFKKADDAEKAILGSHE 60
          +FI  +  +     LY  +   G +   K++    G   YG V F+  + AE+AI   + 
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 70

Query: 61 KHFFGCKIDVSP 72
                K+ V  
Sbjct: 71 MLLNDRKVFVGR 82

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.6 bits (76), Expect = 5e-04
 Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 3  LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
          +F+    Y  ++  LKD                        YG   ++  + A  A+   
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70

Query: 59 HEKHFFGCKIDVSP 72
          + + F G  + V  
Sbjct: 71 NGREFSGRALRVDN 84

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]} Length = 139

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 34.1 bits (77), Expect = 5e-04
 Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 3   LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
           L +      V +  L+                    +    YG V F+    A++AI G 
Sbjct: 45  LMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGL 104

Query: 59  HEKHFFGCKIDVS 71
           +  +    ++ V+
Sbjct: 105 NGFNILNKRLKVA 117

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 5e-04
 Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKH 62
          ++   ++       +   +   G++  +++  +    Y  V F   + A  AI+  +   
Sbjct: 21 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTT 78

Query: 63 FFGCKIDVS 71
            G  +   
Sbjct: 79 IEGHVVKCY 87

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.5 bits (76), Expect = 6e-04
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 3  LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
          LF+    Y  S+  L+               +  + +    +  V F   + A KA    
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70

Query: 59 HEKHFFGCKIDVSP 72
            + F G  + V P
Sbjct: 71 DGQVFQGRMLHVLP 84

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (74), Expect = 8e-04
 Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 4/73 (5%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKV----SWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
          L++  +++      L+  +   G +      +    +    +  V F+ A+DA  AI   
Sbjct: 8  LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67

Query: 59 HEKHFFGCKIDVS 71
          +E   FG  I V+
Sbjct: 68 NESELFGRTIRVN 80

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.2 bits (73), Expect = 0.001
 Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 3  LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
          L +    + VSD  +++ L+ E+    K +              V F++  DA KA+   
Sbjct: 3  LLVSNLDFGVSDADIQE-LFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 61

Query: 59 HEKHFFGCKIDVS 71
          +     G  +++ 
Sbjct: 62 NGVPLDGRPMNIQ 74

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (72), Expect = 0.001
 Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 3  LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
          L +      ++    +       +          I      YG V +    DAEKAI   
Sbjct: 5  LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64

Query: 59 HEKHFFGCKIDVS 71
          +        I VS
Sbjct: 65 NGLRLQTKTIKVS 77

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.0 bits (72), Expect = 0.002
 Identities = 11/73 (15%), Positives = 19/73 (26%), Gaps = 4/73 (5%)

Query: 3  LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
          LFI        D  L               ++         +G V +     A+ AI   
Sbjct: 21 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 80

Query: 59 HEKHFFGCKIDVS 71
          +       ++ V 
Sbjct: 81 NGFQIGMKRLKVQ 93

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.4 bits (71), Expect = 0.002
 Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKII----GQGGDRYGLVCFKKADDAEKAILGS 58
          L++  +     +  LY ++   G +  +++      +    Y  V F++  DAE+A+   
Sbjct: 3  LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62

Query: 59 HEKHFFGCKIDVSP 72
          +     G  + +  
Sbjct: 63 NFDVIKGKPVRIMW 76

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 31.5 bits (71), Expect = 0.003
 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGD-------RYGLVCFKKADDAEKAI 55
          LFI  ++ ++ ++ L   + K G +    I  +           +G V +KK + A+KA+
Sbjct: 1  LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60

Query: 56 LGSHEKHFFGCKIDVS 71
                   G K++V 
Sbjct: 61 KQLQGHTVDGHKLEVR 76

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (70), Expect = 0.004
 Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 6/74 (8%)

Query: 3  LFI----YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS 58
          L +    +  ++  LK+      +         +       +G V F + +   K +   
Sbjct: 11 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 70

Query: 59 HEKHFFGCKIDVSP 72
          H     G   D   
Sbjct: 71 HM--IDGRWCDCKL 82

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 31.1 bits (70), Expect = 0.004
 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 3  LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDR----YGLVCFKKADDAEKAILGS 58
          LFI  + +    D +       G +    ++          Y    +   +  ++AI G 
Sbjct: 4  LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63

Query: 59 HEKHFFGCKIDVS 71
          +       K+ V 
Sbjct: 64 NGMQLGDKKLLVQ 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	83
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.89
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	99.88
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.88
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	99.88
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	99.88
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	99.88
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	99.87
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.87
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	99.87
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	99.87
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	99.87
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.86
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	99.86
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.86
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.86
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.86
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.86
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	99.86
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.86
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	99.86
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	99.85
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	99.85
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	99.85
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	99.85
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.85
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.85
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	99.85
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	99.85
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	99.85
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	99.85
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	99.84
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	99.84
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.84
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	99.84
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	99.84
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.84
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	99.83
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	99.83
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	99.83
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	99.83
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	99.83
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	99.83
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	99.83
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.83
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	99.83
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.83
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	99.83
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	99.83
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	99.82
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	99.82
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	99.81
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	99.81
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	99.81
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.81
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	99.81
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	99.81
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	99.81
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	99.8
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.8
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	99.8
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	99.8
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	99.8
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.79
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	99.79
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	99.78
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	99.78
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	99.78
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	99.77
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	99.77
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	99.76
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	99.76
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	99.76
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.76
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	99.76
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	99.73
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	99.72
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.72
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.72
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	99.71
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.69
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	99.69
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	99.68
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	99.67
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.66
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	99.64
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	99.54
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	98.45
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	97.89
d1uw4a_	91	RNA processing protein UPF3x, RRM domain {Human (H	93.58
d1whva_	100	Poly(A)-specific ribonuclease PARN {Mouse (Mus mus	91.06

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.9e-23  Score=126.17  Aligned_cols=74  Identities=16%  Similarity=0.227  Sum_probs=70.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||+|.++++|++|++.|||..+.|++|.|..|++
T Consensus         2 slfV~nL~~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~aFV~f~~~~~a~~ai~~l~g~~~~gr~i~v~~a~~   79 (80)
T d1cvja1           2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR   79 (80)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHTTSTTCEETTEECEEEECCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCEeEEEEEecccccCCCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeCC
Confidence            79999999999999999999999999999999976    479999999999999999999999999999999999874

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.8e-23  Score=127.12  Aligned_cols=80  Identities=14%  Similarity=0.097  Sum_probs=74.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      ||||++++.+..+++|++.|++||+|.+|.|+.+.    ++|||||+|.++++|+.|++.|||..++|++|.|+.+.+..
T Consensus         9 tlfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V~~a~~~~   88 (93)
T d1h2vz_           9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK   88 (93)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHCCcceeccccccccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCCCC
Confidence            89999999999999999999999999999999876    47899999999999999999999999999999999998765


Q ss_pred             cccc
Q psy11609         78 FELE   81 (83)
Q Consensus        78 ~e~e   81 (83)
                      ...+
T Consensus        89 ~grq   92 (93)
T d1h2vz_          89 EGRQ   92 (93)
T ss_dssp             TTCC
T ss_pred             CCCC
Confidence            4433

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=8.1e-23  Score=123.98  Aligned_cols=74  Identities=23%  Similarity=0.310  Sum_probs=69.8

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      |||++|+.++.+++|++.|++||+|.+|+|+.+.       ++|||||+|.++++|++|++.|||..+.|++|.|+.|+.
T Consensus         1 LfV~nLp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~~~kG~afV~f~~~~~A~~A~~~~~~~~~~g~~i~V~~a~~   80 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISER   80 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSC
T ss_pred             CEEcCCCCCCCHHHHHHHHHHhCCccccceecccccccccccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            8999999999999999999999999999999864       378999999999999999999999999999999999875


Q ss_pred             C
Q psy11609         76 V   76 (83)
Q Consensus        76 ~   76 (83)
                      .
T Consensus        81 ~   81 (85)
T d2cpfa1          81 A   81 (85)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.88  E-value=6e-23  Score=123.65  Aligned_cols=73  Identities=18%  Similarity=0.230  Sum_probs=70.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++|+.+..+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|++|++.|||..+.|++|+|+.|+
T Consensus         4 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~A~~ai~~lng~~~~g~~l~v~~a~   80 (82)
T d1b7fa1           4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR   80 (82)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeecccCCccccceEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            79999999999999999999999999999999875    48899999999999999999999999999999999987

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=8e-23  Score=123.10  Aligned_cols=72  Identities=13%  Similarity=0.085  Sum_probs=69.0

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      |||++++.+..+++|++.|++||+|.+|+|+.+.   ++|||||+|.++++|++|++.|||.++.|++|+|++|.
T Consensus         3 l~V~nLp~~~~~~~l~~~F~~~G~v~~~~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~l~V~~a~   77 (78)
T d1no8a_           3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT   77 (78)
T ss_dssp             EEEESCCTTCCHHHHHHHHHHHSCEEEEEESCSSCCCSCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred             EEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeeccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            8999999999999999999999999999999876   58899999999999999999999999999999999875

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=124.77  Aligned_cols=74  Identities=22%  Similarity=0.372  Sum_probs=71.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.  ++|||||+|.++++|++|++.|||..|.|++|.|+.|+.
T Consensus        10 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~V~~a~~   85 (89)
T d1cvja2          10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS   85 (89)
T ss_dssp             EEEEESCCSSCCHHHHHHHHHTTSCEEEEEECCBTTBCCSCEEEEESCHHHHHHHTTSSSEEEETTEEEEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEeecCCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence            79999999999999999999999999999999986  589999999999999999999999999999999999984

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.5e-22  Score=128.29  Aligned_cols=74  Identities=15%  Similarity=0.146  Sum_probs=70.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++|+.+..+++|++.|++||+|.+|++..++ ++|||||+|.++++|+.|++.|||..|.|++|.|.+|+.
T Consensus         9 ~l~V~nLp~~~te~~l~~~F~~~G~v~~i~~~~~~~~kG~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~   83 (114)
T d2f9da1           9 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNA   83 (114)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred             EEEEECCCCCCCHHHHHHHHhhcCCeEeecccccCCcCCeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            79999999999999999999999999999999876 699999999999999999999999999999999999873

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-22  Score=121.55  Aligned_cols=73  Identities=21%  Similarity=0.258  Sum_probs=69.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++.|||..+.|++|.|+.|+
T Consensus         4 ~l~V~nLp~~~te~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~g~~l~v~~Ak   80 (82)
T d1fxla1           4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR   80 (82)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCcccccceeeccCCCceeeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence            79999999999999999999999999999999875    48899999999999999999999999999999999985

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-22  Score=122.05  Aligned_cols=69  Identities=23%  Similarity=0.308  Sum_probs=66.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDV   70 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V   70 (83)
                      ||||++|+.++.+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|++|+.+|||..|+|++|+|
T Consensus        11 ~l~V~nL~~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gr~i~V   83 (83)
T d2cqca1          11 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV   83 (83)
T ss_dssp             CEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCCccccccccccccccccceEEEECCHHHHHHHHHHcCCCEECCEEeEC
Confidence            79999999999999999999999999999999875    4889999999999999999999999999999987

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-22  Score=124.90  Aligned_cols=73  Identities=22%  Similarity=0.271  Sum_probs=70.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.|.    ++|||||.|.++++|++|++++||..|.|++|.|..|+
T Consensus         7 tlfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~kg~afV~f~~~~~A~~ai~~l~~~~i~g~~l~v~~a~   83 (89)
T d2cqba1           7 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK   83 (89)
T ss_dssp             CEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred             EEEEeCCCCcCCHHHHHHHHhhCCeEEecccccccccccccceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence            89999999999999999999999999999999876    58999999999999999999999999999999999997

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=7.9e-22  Score=122.04  Aligned_cols=73  Identities=25%  Similarity=0.290  Sum_probs=70.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.  ++|||||.|.++|+|++|+..|||..|.|++|+|+.|+
T Consensus        13 ~l~v~nLp~~~t~~~L~~~F~~~G~v~~v~~~~~~~~~kg~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~A~   87 (93)
T d2cq3a1          13 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT   87 (93)
T ss_dssp             EEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHhhcceeeeccccccccCCcceeEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence            79999999999999999999999999999999876  68999999999999999999999999999999999998

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.1e-22  Score=124.07  Aligned_cols=77  Identities=18%  Similarity=0.242  Sum_probs=72.5

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      .||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||.|.++++|++|++.|||..+.|++|+|..|...
T Consensus        10 ~tlfV~nLp~~~t~~~l~~~F~~~G~v~~v~~~~d~~tg~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~A~~~   89 (93)
T d1x5ua1          10 ATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAH   89 (93)
T ss_dssp             TEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTT
T ss_pred             CEEEEeCCCCcCCHHHHHHHHHHhCCccccceeecccccccccceEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCC
Confidence            389999999999999999999999999999999875    5889999999999999999999999999999999999865


Q ss_pred             C
Q psy11609         77 D   77 (83)
Q Consensus        77 ~   77 (83)
                      +
T Consensus        90 ~   90 (93)
T d1x5ua1          90 N   90 (93)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.2e-22  Score=122.07  Aligned_cols=73  Identities=15%  Similarity=0.281  Sum_probs=70.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++|+.+..+++|++.|++||+|++|+|+.|.    ++|||||+|.++++|.+|++.|||..+.|++|.|+.|.
T Consensus        10 ~i~V~nLp~~~t~~~l~~~f~~~G~v~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g~~i~v~~ak   86 (90)
T d2cq0a1          10 TIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAK   86 (90)
T ss_dssp             EEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhcccccccccccccccccccceeEEECCHHHHHHHHHHhCCCEECCEEEEEEeee
Confidence            79999999999999999999999999999999875    48899999999999999999999999999999999997

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.6e-22  Score=120.87  Aligned_cols=74  Identities=15%  Similarity=0.161  Sum_probs=70.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      .|||++++.+..+++|++.|++||+|.+|+|+.|.    ++|||||+|.++++|+.|++.|||..+.|++|.|+.|..
T Consensus         3 rlfV~nlp~~~te~~l~~~F~~~G~v~~v~i~~d~~tg~~rg~aFV~f~~~~~A~~a~~~l~~~~l~g~~l~V~~A~~   80 (85)
T d2u2fa_           3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV   80 (85)
T ss_dssp             CEEEETCCSSCCSHHHHHHHTSSSCEEEEEEECCCSSSCCCCEEEEEESSSHHHHHHHHTSSSCCCSSSCCEEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCccceEEeeccccccccceeEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCC
Confidence            48999999999999999999999999999999975    589999999999999999999999999999999999974

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.9e-22  Score=121.49  Aligned_cols=77  Identities=18%  Similarity=0.238  Sum_probs=72.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF   78 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~   78 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.  ++|||||+|.++++|++|+..+||..+.|++|+|..|..|..
T Consensus        10 tl~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~a~~~~~   88 (90)
T d2cqia1          10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS   88 (90)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhcCCceeeeeecccCccceeeEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCC
Confidence            89999999999999999999999999999999876  589999999999999999999999999999999999987653

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.6e-22  Score=123.11  Aligned_cols=75  Identities=16%  Similarity=0.274  Sum_probs=70.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhc-CCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGS-HEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~-ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++++.+..+++|++.|++||+|++|+|+.+.     ++|||||+|.++++|.+|+..| ||..|.|++|.|+.|+.
T Consensus        10 ~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~~~~~~g~~rg~afV~f~~~~~A~~Ai~~l~~~~~~~Gr~l~V~~A~~   89 (94)
T d2cpha1          10 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADS   89 (94)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCceEEEEEeccccCCCcccEEEEEECCHHHHHHHHHHccCCcEECCEEEEEEEcCC
Confidence            79999999999999999999999999999998763     5899999999999999999998 99999999999999985


Q ss_pred             C
Q psy11609         76 V   76 (83)
Q Consensus        76 ~   76 (83)
                      .
T Consensus        90 ~   90 (94)
T d2cpha1          90 E   90 (94)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.2e-21  Score=119.68  Aligned_cols=74  Identities=19%  Similarity=0.255  Sum_probs=66.5

Q ss_pred             eEeeeecCCcchh-hHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLK-DGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~-d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++++.+.++ +.|++.|++||+|.+|+|..+.     ++|||||+|.++++|++|++ |||..|.|++|.|.+|..
T Consensus         6 ~l~V~nLp~~~t~ed~l~~~F~~~G~i~~v~i~~~~~~~~~~kg~afV~f~~~~~a~~Al~-~n~~~~~gr~l~V~~a~~   84 (86)
T d2ghpa3           6 EIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERALQ-MNRSLLGNREISVSLADK   84 (86)
T ss_dssp             EEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHGG-GTTEEETTEEEEEEECCC
T ss_pred             EEEEECCCCCcccHHHHHHHHHhhhhccceeeecccCCccccceeeeEEECCHHHHHHHHh-cCCCEECCEEEEEEEcCC
Confidence            7999999998775 4599999999999999987642     58999999999999999995 999999999999999974


Q ss_pred             C
Q psy11609         76 V   76 (83)
Q Consensus        76 ~   76 (83)
                      .
T Consensus        85 k   85 (86)
T d2ghpa3          85 K   85 (86)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=9.5e-22  Score=120.61  Aligned_cols=73  Identities=16%  Similarity=0.256  Sum_probs=69.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|.+.|++||+|.+|+|+.|.    ++|||||.|.++++|++|++.|||..+.|++|.|+.|.
T Consensus         9 ~l~V~nL~~~~t~~~l~~~F~~~G~i~~v~i~~d~~tg~~~g~afV~f~~~~~A~~A~~~lng~~l~g~~l~V~~a~   85 (88)
T d1rk8a_           9 ILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF   85 (88)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCcccccccccccccccccceeEEECCHHHHHHHHHHcCCCEECCEEEEEEEec
Confidence            79999999999999999999999999999999875    48999999999999999999999999999999999875

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=5.7e-22  Score=119.25  Aligned_cols=73  Identities=8%  Similarity=0.068  Sum_probs=67.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++++.+..+++|++.|++||+|.+++++.+.    ++|||||+|.++|+|++|++.|||..+.|++|.|+.++
T Consensus         3 tl~v~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~e~A~~Ai~~l~g~~~~g~~i~V~~a~   79 (81)
T d2ghpa1           3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN   79 (81)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred             EEEEECCCCcCCHHHHHHHHHHhCcEEeeeeecccccccccceeEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence            89999999999999999999999999989888765    58999999999999999999999999999999999885

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.86  E-value=7.8e-22  Score=119.96  Aligned_cols=72  Identities=19%  Similarity=0.210  Sum_probs=68.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a   73 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|.+|++.|||..+.|  +||+|..|
T Consensus         8 ~lfV~nlp~~~te~~l~~~F~~~G~i~~~~~~~d~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~~~l~V~~A   85 (85)
T d1b7fa2           8 NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA   85 (85)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhCCEeeeeeecccccccCceeEEEEECCHHHHHHHHHHHCCCEeCCCCeEEEEEEC
Confidence            69999999999999999999999999999999875    58899999999999999999999999987  99999876

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=7.7e-22  Score=119.13  Aligned_cols=74  Identities=20%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEE-EEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWV-KIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv-~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      |||++++.+..+++|++.|++||+|.++ +|+++.    ++|||||.|.++++|++|++.|||..+.|++|.|..|.-.
T Consensus         1 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~g~~~~gr~l~v~~a~~k   79 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK   79 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred             CEEcCCCCcCcHHHHHHHHHHhCceeeeEEEEeeccccccCceEEEEECCHHHHHHHHHhCCCcEECCEEEEEEEecCC
Confidence            7999999999999999999999999664 788765    5899999999999999999999999999999999999844

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=9.4e-22  Score=121.22  Aligned_cols=70  Identities=20%  Similarity=0.211  Sum_probs=65.4

Q ss_pred             eEeeeecCCcchhhHH---HHHhccCCceeEEEEeccC-------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEE
Q psy11609          2 ALFIYVVSDTSLKDGL---YHEYKKHGKVSWVKIIGQG-------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVS   71 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L---~~eF~kfG~Itsv~V~~d~-------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~   71 (83)
                      +|||++|+.+..+++|   ++.|++||+|.+|+|+.+.       +.|||||+|.++|+|.+|++.|||..++|++|+|+
T Consensus        10 ~vyV~nLp~~~t~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~~~~~g~aFV~f~~~~~A~~Ai~~lng~~~~gr~lkvS   89 (89)
T d2cpia1          10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS   89 (89)
T ss_dssp             CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred             EEEEECCCCccCHHHHHHHHHHhcccCCceEEEEeeccCcCCCCCcceEEEEecccchhHHHHHHHhCCCEECCEEEEEC
Confidence            6899999999999998   7789999999999999876       24899999999999999999999999999999985

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=9e-22  Score=120.07  Aligned_cols=72  Identities=22%  Similarity=0.278  Sum_probs=67.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a   73 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.|.    ++|||||+|.++++|++|++.|||..+.|  +||.|..|
T Consensus         8 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~g~~kg~afV~f~~~~~a~~Ai~~lng~~~~G~~~~i~V~~A   85 (85)
T d1fxla2           8 NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA   85 (85)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHhCCccccccccccccccCCCeeEEEEcCHHHHHHHHHHhCCCEeCCCCEEEEEEeC
Confidence            69999999999999999999999999999999875    58899999999999999999999999998  66999865

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.3e-21  Score=122.71  Aligned_cols=71  Identities=17%  Similarity=0.273  Sum_probs=65.2

Q ss_pred             eEeeeecCC-cchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSD-TSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d-~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+. .+.+++|++.|++||+|.+|+|    ++|||||+|.++++|++|+++|||+.|.|++|+|+++..+
T Consensus        17 ~lfV~nL~~~~~~~~~L~~~F~~~G~i~~~~i----~rg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~   88 (98)
T d1wf2a_          17 RVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV----HKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEP   88 (98)
T ss_dssp             CEEEEEECTTTCCHHHHHHSSTTSSCEEEEEE----ETEEEEEEESSHHHHHHHHHTTTTCEETTEECEEEETTSC
T ss_pred             EEEEeCCCcccCCHHHHHHHHhhcCCEEEEEE----eCCeEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            699999974 5666789999999999999999    5799999999999999999999999999999999999744

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.7e-21  Score=121.35  Aligned_cols=76  Identities=22%  Similarity=0.215  Sum_probs=71.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||+|.++++|++|++.|||..|.|++|+|.++....
T Consensus        10 ~lfV~nL~~~~t~~~l~~~F~~~g~v~~v~i~~d~~tg~~~g~afV~f~~~~~a~~A~~~l~g~~~~gr~i~V~~a~~~~   89 (99)
T d1whwa_          10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK   89 (99)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred             EEEEECCCCcCCHHHHHHHHHhcCCceeeeecccccccccCcceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence            59999999999999999999999999999999875    58899999999999999999999999999999999998543

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-21  Score=120.59  Aligned_cols=76  Identities=16%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             CeEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          1 MALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         1 ~~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      .+|||++|+.++.+++|++.|++||+|.+|+|+.|.    ++|||||.|.++++|++|++.++  .|.|++|.|..|+..
T Consensus         9 ~~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~srG~aFV~f~~~~~a~~al~~~~--~l~Gr~i~v~~a~~k   86 (90)
T d2cqga1           9 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRH--MIDGRWCDCKLPNSK   86 (90)
T ss_dssp             CCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSCE--EETTEEEEEECCCTT
T ss_pred             CeEEEECCCCCCCHHHHHHHHHhhcccceeeeccCCCCcccCCEEEEEECCHHHHHHHHhcCC--ccCCEEeEEEeCCCC
Confidence            379999999999999999999999999999999976    58999999999999999998654  899999999999865


Q ss_pred             Cc
Q psy11609         77 DF   78 (83)
Q Consensus        77 ~~   78 (83)
                      +.
T Consensus        87 ~~   88 (90)
T d2cqga1          87 QS   88 (90)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.85  E-value=1.5e-21  Score=127.45  Aligned_cols=73  Identities=22%  Similarity=0.343  Sum_probs=70.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++|..+..+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|.+|++.|||.+|+|++|.|+.|.
T Consensus        44 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~t~~~rg~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~  120 (139)
T d1u6fa1          44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAA  120 (139)
T ss_dssp             EEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhccccccccccccccccccceeeEEECCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence            69999999999999999999999999999999976    48999999999999999999999999999999999986

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.5e-21  Score=122.73  Aligned_cols=76  Identities=18%  Similarity=0.245  Sum_probs=71.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|++.|++||.|.+++++.+.    ++|||||+|.++++|+.|++.|||..|.|++|+|+.+...+
T Consensus        20 ~l~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~g~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~~i~V~~a~~k~   99 (102)
T d2cpza1          20 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN   99 (102)
T ss_dssp             CEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhhccccccceeeecccCCCccceEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEeCCCC
Confidence            69999999999999999999999999999999875    48899999999999999999999999999999999987644

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.2e-21  Score=122.70  Aligned_cols=75  Identities=15%  Similarity=0.260  Sum_probs=71.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++++.+..+++|++.|++||+|.+|+|+.+.    ++|||||+|.++++|++|++.|||..|.|++|.|..|...
T Consensus        10 tl~V~nLp~~~te~~l~~~f~~~G~i~~v~i~~~~~tg~~~g~afV~f~~~~~a~~ai~~l~~~~~~g~~i~V~~a~~~   88 (104)
T d1p1ta_          10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE   88 (104)
T ss_dssp             CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred             EEEEECCCCcCCHHHHHHhhhccccccccccccccceeccCCceEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence            79999999999999999999999999999999875    4889999999999999999999999999999999998754

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-21  Score=122.81  Aligned_cols=72  Identities=22%  Similarity=0.260  Sum_probs=68.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++|+.+..+++|+..|+.||+|.+|+++.+.    ++|||||+|.++|+|++|+ +|||..|.|++|.|.+++
T Consensus        20 tifV~nL~~~~te~~l~~~F~~~G~V~~v~i~~d~~tg~~kG~afV~F~~~e~a~~A~-~l~g~~~~G~~l~V~~a~   95 (101)
T d2cq4a1          20 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ   95 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred             EEEEECCCCCCCHHHHHHHHcCCCeEEEEEeeecCCCccccceEEEEECCHHHHHHHH-HHCCCEECCEEEEEEECC
Confidence            79999999999999999999999999999999975    6999999999999999999 599999999999999876

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.3e-21  Score=118.10  Aligned_cols=71  Identities=18%  Similarity=0.277  Sum_probs=67.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      .|||++|+.+..+++|++.|++||+|.+|+|+.|.    ++|||||.|.++|+|++|+. +|+..+.|++|.|..|
T Consensus         2 klfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~aFV~f~~~~~a~~al~-~~~~~i~Gr~i~V~~A   76 (77)
T d1uawa_           2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA-QSRHELDSKTIDPKVA   76 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHH-TTTCCCSSCCCEEEEC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhCCcceeeeecccCCCCccceEEEEECCHHHHHHHHH-cCCCEECCeEEEEEEC
Confidence            58999999999999999999999999999999976    68999999999999999996 7999999999999876

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2e-21  Score=116.27  Aligned_cols=70  Identities=24%  Similarity=0.303  Sum_probs=66.0

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      |||++++.+..+++|+..|++||+|++|.|+.+.    ++|||||+|.++++|++|++ +++..|.|++|.|..|
T Consensus         2 lfV~nl~~~~te~~l~~~F~~~G~i~~~~i~~d~~t~~~kg~afV~f~~~~~a~~Al~-~~~~~l~Gr~i~V~rA   75 (75)
T d1hd0a_           2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMD-QKEHKLNGKVIDPKRA   75 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHHHTTSCEEEEECCCBTTTTBCCSEEEEEESSHHHHHHHHH-TCCCCBTTBCCEECCC
T ss_pred             EEEeCCCCcCCHHHHHHHHHhhccccccccccCCCCCCcCceEEEEECCHHHHHHHHh-cCCCEECCCEEEeeEC
Confidence            8999999999999999999999999999999976    58999999999999999996 7999999999999765

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.7e-21  Score=116.95  Aligned_cols=72  Identities=14%  Similarity=0.265  Sum_probs=67.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.|.    ++|||||+|.++++|++|++ ++|..|.|++|.|..|-
T Consensus         8 ~lfV~nlp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~a~~ai~-~~~~~i~Gr~i~V~~A~   83 (84)
T d1l3ka1           8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRAV   83 (84)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEECC
T ss_pred             EEEEECCCCCCCHHHHHHHHHhhccccceeecccccCCCcccEEEEEEcCHHHHHHHHH-hCCCEECCEEEEEEeee
Confidence            69999999999999999999999999999999876    59999999999999999996 68999999999998874

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.3e-21  Score=121.44  Aligned_cols=72  Identities=18%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      ||||++|+.+ ..+++|++.|++||+|.+|+|+.+ .+|||||.|.++|+|++|++.|||..|.|++|.|..+.
T Consensus         4 ~l~V~nL~p~~~te~~L~~~F~~fG~I~~v~i~~~-~kg~afV~f~~~~~A~~ai~~lng~~l~g~~l~v~~s~   76 (109)
T d2adca1           4 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN-KKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK   76 (109)
T ss_dssp             EEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCT-TSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred             EEEEeCCCcccCCHHHHHHHHhhccccceEEEEec-ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence            7999999765 667889999999999999999987 48999999999999999999999999999999999985

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.1e-21  Score=119.89  Aligned_cols=72  Identities=11%  Similarity=0.217  Sum_probs=68.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|+..|++||+|.+|+|+.+  +|||||.|.++++|++|+..|||..|.|++|+|..+..
T Consensus        20 ~l~v~nL~~~~te~~L~~~F~~fG~i~~v~i~~~--kg~afV~f~~~~~A~~Ai~~l~~~~i~g~~l~v~~ak~   91 (96)
T d1x4ga1          20 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE   91 (96)
T ss_dssp             EEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHhCCceEEEEEec--ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            7999999999999999999999999999999975  89999999999999999999999999999999998863

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.1e-21  Score=113.45  Aligned_cols=71  Identities=15%  Similarity=0.299  Sum_probs=66.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      +|||++|+.++.+++|++.|++||+|.+++++.+.    ++|||||+|.++|+|++|+ .+||..|.|++|.|..|
T Consensus         4 ~lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~e~~~~al-~~~~~~l~Gr~i~V~~A   78 (79)
T d1l3ka2           4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCEVRKA   78 (79)
T ss_dssp             EEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH-HCSCCEETTEECEEEEC
T ss_pred             EEEECCCCCcCCHHHHHHHHHHhccccccccccCCCCcccccEEEEEEcCHHHHHHHH-HhCCCEECCEEEEEEEC
Confidence            69999999999999999999999999999999876    4899999999999999998 58999999999999876

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.1e-20  Score=113.28  Aligned_cols=71  Identities=20%  Similarity=0.230  Sum_probs=67.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC--CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG--GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~--~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      ||||++++.+..+++|++.|+.||+|.+|++..+.  +.+||||.|+++++|++|+ .|||+.|+|++|.|+.+
T Consensus         2 tv~V~nlp~~~t~~~l~~~F~~~G~I~~v~~~~~~~~~~~~afV~F~~~~~a~~Al-~~~~~~i~g~~i~V~~~   74 (75)
T d2ghpa2           2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHL   74 (75)
T ss_dssp             EEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHhcCCceEEEEEEeeccccceEEEEEEcchHHhHHHH-HhcCcEECCEEEEEEEC
Confidence            89999999999999999999999999999999876  5789999999999999998 58999999999999875

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-21  Score=122.24  Aligned_cols=73  Identities=16%  Similarity=0.135  Sum_probs=69.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++++.+..+++|++.|++||+|.++.++.+.   ++|||||+|.++|+|++|++.|||+.|.|+|+.|.+++
T Consensus        20 ~lfV~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~i~gr~~~v~~~~   95 (101)
T d1x5oa1          20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE   95 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhcccccceeeecccccccccceeEEeCCHHHHHHHHHHhCCCEECCcCCccCCCC
Confidence            69999999999999999999999999999998875   48899999999999999999999999999999998775

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.1e-20  Score=114.87  Aligned_cols=76  Identities=18%  Similarity=0.233  Sum_probs=70.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCcc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDFE   79 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~e   79 (83)
                      ||||++++.+..+++|++.|++||.|..+.+..  ++|||||.|.++++|.+|+..|||..|.|++|.|..|+-++.+
T Consensus        10 ~l~V~nLp~~~te~~l~~~F~~~g~i~~~~~~~--~rg~afV~f~~~~~A~~Ai~~l~~~~i~g~~i~V~~akP~~~~   85 (86)
T d2cpda1          10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKD   85 (86)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCCC
T ss_pred             EEEEcCCCCCCCHHHHHHhhcccceeeeEEEcc--ccEEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEeccCCCCC
Confidence            799999999999999999999999999888754  7899999999999999999999999999999999999866554

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.8e-21  Score=115.39  Aligned_cols=71  Identities=13%  Similarity=0.194  Sum_probs=65.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||+++  +..+++|++.|++||+|.+|++..  ++|||||.|.++++|.+|+++|||..+.|++|+|+.+...
T Consensus         7 ti~V~~~--~~te~~L~~~F~~~G~I~~v~~~~--~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~   77 (79)
T d2bz2a1           7 TLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ   77 (79)
T ss_dssp             EEEEECS--SCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred             EEEEECC--CCCHHHHHHHHhccCccceeeecc--CCCEEEEEEcccHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence            8999986  377888999999999999999976  6789999999999999999999999999999999999743

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-20  Score=118.95  Aligned_cols=73  Identities=18%  Similarity=0.210  Sum_probs=68.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++++.+..+++|++.|++||+|.+|+|+.|.    ++|||||+|.++|+|++|++.+|+ .|.|++|.|..|..
T Consensus        12 ~lfV~nLp~~~te~~l~~~F~~~G~i~~v~i~~d~~tg~~kg~afV~f~~~~~A~~Ai~~~~~-~l~Gr~l~V~~a~~   88 (103)
T d2cqda1          12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYL   88 (103)
T ss_dssp             EEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTT
T ss_pred             EEEEeCCCCcCcHHHHHHHHhhcccccceeccccccccccCCeEEEEECCHHHHHHHHHHCCC-cCCCEEEEEEEcCC
Confidence            59999999999999999999999999999999875    689999999999999999999987 79999999999874

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=3.6e-21  Score=113.63  Aligned_cols=70  Identities=19%  Similarity=0.245  Sum_probs=66.3

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      |||++++.++.+++|++.|++||+|.++.++.+.    ++|||||+|.++|+|++|+. +||..|.|++|.|..|
T Consensus         2 lfV~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~~~afV~F~~~~~a~~al~-~~~~~l~gr~i~V~~A   75 (75)
T d2msta_           2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA   75 (75)
T ss_dssp             EEEECCCSSCCHHHHHHHHHTTSCCSEECCBCCTTCTTSCCEEEEECSCHHHHHHHHH-CSSCCBTTBCCEEEEC
T ss_pred             EEEeCCCCCCCHHHHHHHHHHhCCcceeeeeeeccccccCceeEEEECCHHHHHHHHh-cCCCEECCeEEEEEEC
Confidence            8999999999999999999999999999998866    58999999999999999995 9999999999999875

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-20  Score=119.36  Aligned_cols=73  Identities=18%  Similarity=0.292  Sum_probs=68.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++|+.+..+++|++.|++||+|.+|.|..|.    ++|||||+|.++++|++|+ +|||..|.|++|.|..|.-
T Consensus        22 ~lfVgnLp~~~te~~L~~~F~~~G~i~~~~i~~d~~~~~~kg~aFV~f~~~~~a~~al-~~~~~~l~G~~i~V~~a~~   98 (103)
T d1x4ba1          22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVA   98 (103)
T ss_dssp             EEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHH-TSCSEEETTEEEEEECCSS
T ss_pred             EEEEeCCCCcCCHHHHHHHHHhhCcccceeecccccCCCccCeEEEEECCHHHHHHHH-HhCCCeECCEEEEEEECcc
Confidence            79999999999999999999999999999999875    6899999999999999999 5899999999999998874

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-20  Score=116.47  Aligned_cols=74  Identities=16%  Similarity=0.301  Sum_probs=70.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++++.+..+++|++.|++||+|.++++..+. +++||||.|.++|+|+.|++.|||..|.|++|.|+.|..
T Consensus        16 ~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~e~a~~Ai~~l~g~~~~g~~l~V~~a~~   90 (95)
T d1x4aa1          16 RIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS   90 (95)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred             EEEEECCCCCCCHHHHHHHHhcCCceEEEEecccccccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeccC
Confidence            79999999999999999999999999999998765 689999999999999999999999999999999999974

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.5e-21  Score=120.39  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=70.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee--cCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF--FGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~--~g~~i~V~~a~g   75 (83)
                      +|||++|+.+..+++|++.|++||+|.+|+|+.+.++|||||+|.++|+|.+|+..|||..|  .|++|.|+.++-
T Consensus         9 ~v~V~NL~~~vte~~L~~~F~~~G~i~~~~i~~~~~~g~aFV~f~~~e~A~~Ai~~ln~~~l~~~~~~l~v~~s~~   84 (108)
T d2adba1           9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL   84 (108)
T ss_dssp             EEESCSCCSTTHHHHHHHHHTTTSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHHSCCSSTTCCCCEEEECSS
T ss_pred             EEEEeCcCCCCCHHHHHHHHccCCcEEEEEEEeeCCCCeEEEEECCHHHHHHHHHHHCCCEeccCCcEEEEEecCC
Confidence            68999999999999999999999999999999999999999999999999999999999988  578999988864

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.5e-20  Score=118.20  Aligned_cols=66  Identities=18%  Similarity=0.335  Sum_probs=62.5

Q ss_pred             chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609         12 SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus        12 ~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      .++++|+++|++||+|.+|++..+.++|+|||.|+++|+|.+|+.+|||++|.||+|.|++|+|..
T Consensus        31 ~i~edv~~~~~~~G~V~~v~~~~~~~~G~~fV~f~~~e~A~~A~~~lng~~~~gr~i~v~~~~g~~   96 (99)
T d2dita1          31 EIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT   96 (99)
T ss_dssp             HHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred             HHHHHHHHHhcCcccEEEEeccCCCCccEEEEEECCHHHHHHHHHHhCCcEECCEEEEEEEeCCcC
Confidence            467889999999999999999999999999999999999999999999999999999999999753

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.9e-21  Score=117.03  Aligned_cols=76  Identities=25%  Similarity=0.363  Sum_probs=71.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||++|+.+..+++|.+.|++||+|.+++++.+.    ++|||||.|.++++|++|++.|||..|.|++|.|+.|+.+.
T Consensus         7 kifV~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~~~~g~afV~f~~~~~a~~Ai~~l~~~~~~g~~l~V~~a~~~~   86 (90)
T d1x5sa1           7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS   86 (90)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred             EEEEECCCCcCCHHHHHHhhhccccccceeeccccccccccceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence            69999999999999999999999999999998865    68999999999999999999999999999999999998554

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.2e-20  Score=115.47  Aligned_cols=73  Identities=18%  Similarity=0.177  Sum_probs=69.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++++.+..+++|++.|++||+|.+|+++.  ++|||||.|.++++|++|++.|||..|.|++|+|+.|.-+
T Consensus        10 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~i~~~~--~k~~afV~f~~~~~A~~A~~~l~g~~i~g~~l~V~~A~~~   82 (86)
T d2cpja1          10 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK--DKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS   82 (86)
T ss_dssp             EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET--TTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCceEeeeec--ccceEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCc
Confidence            699999999999999999999999999999986  4789999999999999999999999999999999998743

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=6.5e-21  Score=119.45  Aligned_cols=72  Identities=14%  Similarity=0.135  Sum_probs=67.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++|+.++.+++|++.|++||+|.+|.|..  ++|||||.|.++++|++|++.|||..|.|++|+|+.+..
T Consensus        12 ~l~V~nLp~~~t~~~L~~~F~~fG~I~~v~l~~--~kg~afV~f~~~~~A~~A~~~lng~~~~gr~l~v~~a~~   83 (111)
T d1whxa_          12 VILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI   83 (111)
T ss_dssp             EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred             EEEEECCCCCCCHHHHHhhhhccCCccEEEeec--cCceEEEEEcCHHHHHHHHHHHcCCccCCCeEEEEECCC
Confidence            799999999999999999999999999998854  789999999999999999999999999999999998763

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.6e-21  Score=116.37  Aligned_cols=72  Identities=18%  Similarity=0.139  Sum_probs=67.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCc-eecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEK-HFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~-~~~g~~i~V~~a~g   75 (83)
                      +|||++++.+..+++|++.|++||.|.+++++.  ++|||||+|.++++|++|++.|||. .+.|++|.|+.|.-
T Consensus         3 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~--~rg~aFV~f~~~~~A~~Ai~~lng~~~~~G~~i~V~~a~~   75 (80)
T d2cqha1           3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVS   75 (80)
T ss_dssp             CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCcEEEeEEec--ccceEEEEECCHHHHHHHHHHhCCCeEECCEEEEEEEcCC
Confidence            699999999999999999999999999888876  5899999999999999999999997 49999999999983

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=3.4e-20  Score=113.94  Aligned_cols=74  Identities=16%  Similarity=0.248  Sum_probs=69.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcC------CceecCeeeEEE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSH------EKHFFGCKIDVS   71 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~n------g~~~~g~~i~V~   71 (83)
                      ||||++|+.+..+++|++.|++||+|.++.++.+.    ++|||||+|.++++|++|++.+|      |..+.|++|.|+
T Consensus        10 tlfV~nLp~~~te~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~F~~~~~a~~ai~~l~~~~~~~g~~~~gr~l~v~   89 (98)
T d1x4ha1          10 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVD   89 (98)
T ss_dssp             CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEE
T ss_pred             EEEEcCCCCcCCHHHHHHHHhccccceeeeeccccccccccceEEEEEcCHHHHHHHHHHcccccccCCcEECCEEEEEE
Confidence            79999999999999999999999999999998876    58999999999999999999886      788999999999


Q ss_pred             ecCC
Q psy11609         72 PYHD   75 (83)
Q Consensus        72 ~a~g   75 (83)
                      .|..
T Consensus        90 ~a~~   93 (98)
T d1x4ha1          90 LAVT   93 (98)
T ss_dssp             CCCC
T ss_pred             ECCC
Confidence            9874

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1e-20  Score=113.93  Aligned_cols=70  Identities=11%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      |||++++.++.+++|++.|++||+|.+|+|+.|.    ++|||||+|.++++|++|++ +++..+.|++|.|..|
T Consensus         2 lfVgnLp~~~te~~l~~~F~~~G~I~~v~i~~d~~t~~~rG~~FV~f~~~~~a~~al~-~~~~~i~g~~i~vk~A   75 (75)
T d1x0fa1           2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA   75 (75)
T ss_dssp             EEEESCCSSCCHHHHHHHHHHHSCEEEEECCCCTTTCCTTCCEEEEESSSHHHHHHTT-CSSCCBTTBCCEEECC
T ss_pred             EEEcCCCCCCCHHHHHHHHHHhCCcccccccccccccccccEEEEEECCHHHHHHHHh-hCCCEECCEEeEEEEC
Confidence            8999999999999999999999999999999986    69999999999999999995 5778999999999765

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.4e-20  Score=112.99  Aligned_cols=74  Identities=15%  Similarity=0.164  Sum_probs=69.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee-cCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF-FGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~-~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|.+.|++||.|.++..+...++|||||.|.++|+|.+|+..|||..+ .|++|+|+.++.
T Consensus        12 tL~V~NLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~afV~f~~~~~A~~A~~~l~~~~i~~g~~l~v~~sk~   86 (88)
T d2adca2          12 TLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS   86 (88)
T ss_dssp             EEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred             EEEEECCCCCCCHHHHHHHhhccCCEEEEEEeeecccceeEEEECCHHHHHHHHHhccCCEecCCCEEEEEeCCC
Confidence            89999999999999999999999999999888877899999999999999999999999888 599999998863

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.81  E-value=3.1e-21  Score=119.43  Aligned_cols=73  Identities=21%  Similarity=0.235  Sum_probs=68.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++||+|.+++|+.+.   ++|||||+|.++|+|++|++ |||..+.|++|.|+.|.+
T Consensus        15 ~ifV~nL~~~~te~~l~~~F~~~G~i~~~~v~~~~~g~~kg~afv~F~~~e~a~~Al~-~~g~~~~g~~i~V~~ak~   90 (91)
T d1fjeb1          15 NLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKG   90 (91)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCCC
T ss_pred             EEEEeCccCcchHHHHHHHHhcCCcEEEeeeeecCCCCccEEeEEeeCCHHHHHHHHh-cCCcEECCEEEEEEecCC
Confidence            79999999999999999999999999999998754   68999999999999999995 999999999999999875

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.3e-20  Score=115.23  Aligned_cols=70  Identities=13%  Similarity=0.200  Sum_probs=65.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      .|||++++.++.+++|++.|++||+|.+|+|+.+   |||||+|.++++|++|+..|||..|.|++|.|..+.
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~i~v~~~~   71 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR   71 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred             eEEEECCCCcCCHHHHHHHHhhhccccccccccc---ceeeEEeCCHHHHHHHHHHhCCCEECCcEeEEeEEe
Confidence            5899999999999999999999999999999764   899999999999999999999999999999987764

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=4.3e-20  Score=117.23  Aligned_cols=77  Identities=14%  Similarity=0.155  Sum_probs=69.2

Q ss_pred             eEeeeecCCcchh-----hHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLK-----DGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~-----d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|.++...     +.|+..|+.||+|.++++++  ++|||||+|.++++|.+|+.+|||..|.|++|+|..|+..
T Consensus         7 ~L~v~nl~~~v~~~d~~k~~l~~lF~~~G~i~~~~~~k--~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~   84 (104)
T d1weya_           7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK--SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTL   84 (104)
T ss_dssp             EEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET--TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCS
T ss_pred             eEEEEeCCchhcCcHHHHHHHHHHhcccccceEEEEec--CCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEeecccC
Confidence            7999999988754     34888999999999999986  7899999999999999999999999999999999999866


Q ss_pred             Cccc
Q psy11609         77 DFEL   80 (83)
Q Consensus        77 ~~e~   80 (83)
                      ...+
T Consensus        85 ~~~~   88 (104)
T d1weya_          85 HIGS   88 (104)
T ss_dssp             SCCS
T ss_pred             CCCC
Confidence            5543

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.2e-20  Score=114.81  Aligned_cols=75  Identities=15%  Similarity=0.195  Sum_probs=68.2

Q ss_pred             eEeeeecCCcchhhHHH----HHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLY----HEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~----~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||+++..+..+++|.    +.|++||+|.+|++..+. ++|||||+|.++++|.+|+..+||..+.|++|+|..|..+
T Consensus         5 tl~V~nLp~~~t~~dl~~~l~~~f~~~G~i~~i~~~~~~~~~g~afV~F~~~~~A~~A~~~~~~~~~~g~~l~v~~ak~~   84 (91)
T d1nu4a_           5 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD   84 (91)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHhcccccccceEEeeeccCCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeCCC
Confidence            89999999998887764    568999999999998764 6899999999999999999999999999999999999853

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.7e-20  Score=113.62  Aligned_cols=74  Identities=23%  Similarity=0.275  Sum_probs=66.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCcee--------EEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVS--------WVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~It--------sv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      ||||++|+.+..+++|++.|+.||+|.        .+.+..+.    ++|||||+|.++++|++|+..|||..|.|++|+
T Consensus        10 ~i~V~nLp~~~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~   89 (101)
T d2cpea1          10 AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLK   89 (101)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECE
T ss_pred             EEEEECCCCcCCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHHHhCCCEECCEEEE
Confidence            899999999999999999999999985        34555443    479999999999999999999999999999999


Q ss_pred             EEecCC
Q psy11609         70 VSPYHD   75 (83)
Q Consensus        70 V~~a~g   75 (83)
                      |..|..
T Consensus        90 V~~a~~   95 (101)
T d2cpea1          90 VSLARK   95 (101)
T ss_dssp             EECSSC
T ss_pred             EEEcCC
Confidence            999983

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-19  Score=110.67  Aligned_cols=71  Identities=11%  Similarity=0.089  Sum_probs=66.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      ||||++++.++.+++|++.|++||+|.+|+|..+.   ++|||||+|.++|+|++|++ ++|..+.|++|.|...
T Consensus         8 tvfV~nlp~~~te~~l~~~F~~~G~v~~v~l~~~~~~~~kG~afV~f~~~e~a~~al~-~~~~~~~g~~l~v~~~   81 (85)
T d1zh5a2           8 SVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK   81 (85)
T ss_dssp             EEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHT-CCCCEETTEECEEEEG
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhcccccceeeeeccCCcceEEEEEEcCHHHHHHHHH-HCCCEECCEEEEEEEc
Confidence            89999999999999999999999999999998876   48999999999999999995 7999999999999864

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.8e-20  Score=110.44  Aligned_cols=67  Identities=21%  Similarity=0.223  Sum_probs=63.9

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeE
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKID   69 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~   69 (83)
                      |||++++.++.+++|++.|++||+|.+++++.+.    ++|||||+|.++++|++|+..|||+.|.|+.|+
T Consensus         1 lyV~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~Gr~~k   71 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAK   71 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCC
T ss_pred             CEEeCCCCcCCHHHHHHHHhhhccccccccccccccccccceeEEEECCHHHHHHHHHHhCCCEECCEECc
Confidence            7999999999999999999999999999999876    689999999999999999999999999999874

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=2.2e-19  Score=107.60  Aligned_cols=70  Identities=11%  Similarity=0.080  Sum_probs=64.5

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      |||++++.+..+++|++.|++|| +..+++.  .++|||||.|.++++|++|++.|||..+.|++|.|+++..
T Consensus         1 i~V~nLp~~~t~~~l~~~F~~~g-~~~~~~~--~~~g~afv~f~~~~~A~~Ai~~ln~~~~~g~~l~V~~a~~   70 (75)
T d1wi6a1           1 ILIRGLPGDVTNQEVHDLLSDYE-LKYCFVD--KYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSVQLQPT   70 (75)
T ss_dssp             EEEECCCTTCCHHHHHHHTTTSC-EEEEEEE--TTTTEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCS
T ss_pred             CEEeCCCCcCCHHHHHHHHhccc-ccceeec--ccceeEEEEECCHHHHHHHHHHhCCccCCCCEEEEEEeCC
Confidence            79999999999999999999999 5556653  4899999999999999999999999999999999999975

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.4e-20  Score=113.06  Aligned_cols=72  Identities=17%  Similarity=0.138  Sum_probs=66.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||++|+.++.+++|++.|++||+|.+|+++++ ++|||||+|.++++|++|+.  |+..|.|++|.|..|+-+
T Consensus         7 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~~~~~-~~gfafV~f~~~~~a~~a~~--~~~~i~g~~l~v~~a~~k   78 (88)
T d1wf0a_           7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPK   78 (88)
T ss_dssp             EEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHcCCceEEEEeec-cCceEEEEECCHHHHHHHHh--CCCEECCEEeEEEeCCCC
Confidence            8999999999999999999999999999988764 78999999999999999985  888999999999999743

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.8e-20  Score=119.03  Aligned_cols=69  Identities=20%  Similarity=0.196  Sum_probs=61.2

Q ss_pred             eeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          5 IYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         5 v~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      +..+.++..+|.|++.|+|||+|.+|+|+++.   ++|+|||.|.++++|.+|++.|||++|+|++|.|+++
T Consensus        32 v~~~~~~~~ed~l~e~f~k~G~I~~v~I~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lng~~~~gr~i~v~~s  103 (104)
T d1jmta_          32 MQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS  103 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred             hhhhhhhhhHHHHHHHhccCCCEEEEEeecCCCCCEeeEEEEEEechhHHHHHHHHHCCCEECCEEEEEEEC
Confidence            34444556677799999999999999998865   6899999999999999999999999999999999986

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-20  Score=116.21  Aligned_cols=75  Identities=11%  Similarity=0.046  Sum_probs=70.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++|+.+..+++|+..|++||.|.+++++.+.    ++|||||.|.++++|++|++.|||..|.|++|.|+.|...
T Consensus        20 tl~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~~fV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ak~k   98 (102)
T d2cpxa1          20 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK   98 (102)
T ss_dssp             EEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHhhccceeeEEeecccccccccccceEEeccHHHHHHHHHHhCCCEECCEEEEEEeCCCc
Confidence            79999999999999999999999999999998754    6899999999999999999999999999999999999854

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=110.57  Aligned_cols=71  Identities=15%  Similarity=0.157  Sum_probs=64.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++|| +..+.+.  .++|||||+|.++++|++|+++|||..|.|++|.|+++..
T Consensus         7 ~i~V~nLp~~~t~~~l~~lF~~~G-~~~~~~~--~~kg~afV~f~~~~~A~~Ai~~ln~~~~~G~~l~V~~a~~   77 (88)
T d1wg1a_           7 GILVKNLPQDSNCQEVHDLLKDYD-LKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT   77 (88)
T ss_dssp             CEEEESCCSSCCHHHHHHHTCSSC-CCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             EEEEeCCCCccChHHHHHHHHhcC-ceeeeee--ccCCceEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence            799999999999999999999999 3334443  3789999999999999999999999999999999999863

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.78  E-value=2.8e-19  Score=108.18  Aligned_cols=72  Identities=10%  Similarity=0.066  Sum_probs=66.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee-cCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF-FGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~-~g~~i~V~~a~   74 (83)
                      ||||++++.+..+++|...|++||+|.+|+++.+ .+|||||.|.++++|..|++.|||..| .|++|.|..|.
T Consensus        10 tl~V~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~~i~v~~ak   82 (83)
T d2b0ga1          10 ILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPN-RHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAK   82 (83)
T ss_dssp             EEEEESCCTTCCHHHHHHHHTTSTTEEEEEECTT-TCSCEEEEESSHHHHHHHHHHHTTCBSSTTCBCEEEECC
T ss_pred             EEEEECCCCCCCHHHHHhhhccCccEEEeeeecc-cceeEEEecCCHHHHHHHHHHhCCcEeCCCcEEEEEEec
Confidence            8999999999999999999999999999999875 578999999999999999999999888 57999998874

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=99.78  E-value=2.9e-19  Score=110.63  Aligned_cols=74  Identities=16%  Similarity=0.140  Sum_probs=67.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||++++.+..+++|++.|++||+|..++. ...++|||||+|.++++|++|+..|||..|.|++|+|..++..
T Consensus        18 ~l~V~nL~~~~te~~l~~~F~~~g~v~~~~~-~~~~~~~afV~f~~~~~A~~A~~~l~~~~~~gr~i~V~~a~~k   91 (96)
T d1fjca_          18 TLLAKNLSFNITEDELKEVFEDALEIRLVSQ-DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK   91 (96)
T ss_dssp             EEEEESCCSSCCHHHHHHHHCSEEEECCEEE-TTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcccceeeee-cCccccEEEEEeCCHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence            7999999999999999999999999987653 2236999999999999999999999999999999999998843

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3e-19  Score=108.14  Aligned_cols=72  Identities=13%  Similarity=0.074  Sum_probs=65.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeE-EEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSW-VKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Its-v~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      +|||.+++.+..+++|++.|+.||.|.+ +.+..+.   ++|+|||.|.++|+|++|++.|||+.+.||+|+|.++
T Consensus        11 ~l~v~nLp~~~~~~di~~~F~~~~~~~~~~~~~~~~~g~~~G~afV~f~~~e~a~~Ai~~l~~~~l~gr~i~v~l~   86 (86)
T d2cqpa1          11 IIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG   86 (86)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred             EEEEECCCCCCCHHHHHHHHhhcccceeEEEEEeCCCCCcceEEEEEEcCcHHHHHHHHHcCCCEECCEEEEEEEC
Confidence            6999999999999999999999999976 4555544   5899999999999999999999999999999999985

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=7.2e-19  Score=109.20  Aligned_cols=72  Identities=15%  Similarity=0.257  Sum_probs=67.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecC--eeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFG--CKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g--~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++||+|.+|++.+  +++||||+|.++|+|.+|++.|||..|.|  ++|+|+.|+.
T Consensus        19 tl~V~nLp~~~t~~~l~~~f~~~G~i~~~~~~~--~~~~afV~f~~~~~A~~A~~~l~~~~i~g~~~~l~v~~ak~   92 (97)
T d1whya_          19 RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK--GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKS   92 (97)
T ss_dssp             CEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS--SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCC
T ss_pred             EEEEcCCCCCCCHHHHHHHHHhhcccceEeeec--cccEEEeccCCHHHHHHHHHHhCCCEeCCCceEEEEEeCCC
Confidence            799999999999999999999999999999976  57899999999999999999999999987  5899999984

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=5.1e-19  Score=110.72  Aligned_cols=70  Identities=16%  Similarity=0.252  Sum_probs=66.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||+++..+..+++|++.|++||+|.+|+|..   +|||||+|.++|+|++|++.|||..|.|++|+|..+.
T Consensus        17 ~i~V~Nlp~~~~~~~L~~~F~~~G~v~~~~i~~---~g~afV~f~~~~~a~~Ai~~lng~~~~g~~i~v~~~~   86 (98)
T d1wg4a_          17 RVLVSGLPPSGSWQDLKDHMREAGDVCYADVQK---DGMGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIR   86 (98)
T ss_dssp             EEEEECCCSSCCHHHHHHHHTTSSCEEEEEEET---TTEEEEEESSHHHHHHHHHHHSSEEEECTTSCEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHhhcccccccccc---cceEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEEe
Confidence            799999999999999999999999999999864   6899999999999999999999999999999999876

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-18  Score=108.65  Aligned_cols=74  Identities=14%  Similarity=0.177  Sum_probs=65.9

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||+++..+..+++|++.|++|| |.+++++.+.     ++|||||.|.++|+|++|+ .+||..|.|++|+|.+|...
T Consensus        17 ~v~V~nLp~~~te~~l~~~f~~~g-~~~~~~~~~~~~~g~~~g~afV~f~~~e~a~~~~-~~~~~~~~gr~l~V~~a~~~   94 (104)
T d1wi8a_          17 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQA   94 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhc-cccceeeeeeccCCCcceeeeEEECCHHHHHHHH-HcCCCEECCEEEEEEECCCC
Confidence            899999999999999999999999 6668887754     4789999999999998776 69999999999999998754


Q ss_pred             C
Q psy11609         77 D   77 (83)
Q Consensus        77 ~   77 (83)
                      .
T Consensus        95 ~   95 (104)
T d1wi8a_          95 Q   95 (104)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8e-19  Score=108.46  Aligned_cols=76  Identities=17%  Similarity=0.146  Sum_probs=68.0

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCc-eeEEEEeccC-----CceEEEEEeCCchHHHHHHhhcCC--ceecCeeeEEEec
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGK-VSWVKIIGQG-----GDRYGLVCFKKADDAEKAILGSHE--KHFFGCKIDVSPY   73 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~-Itsv~V~~d~-----~~g~afV~F~~pEdA~~A~~~~ng--~~~~g~~i~V~~a   73 (83)
                      .|||++++.+..+++|++.|++||+ |++|.++.+.     ++|||||+|.++++|..|++.|++  ..+.|++|.|+.|
T Consensus         3 rLyV~nLp~~~te~~l~~~f~~~g~~i~~v~~~~~~~~~~~~rg~aFV~F~~~~~A~~Ai~~l~~~~~~~~g~~i~V~~A   82 (96)
T d2disa1           3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWA   82 (96)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEES
T ss_pred             EEEEcCCCCcCCHHHHHHHHHHhCCcceEEEEeeeccccccCCCeEEEEEcCHHHHHHHHHHHcCCCeEECCEEEEEEEc
Confidence            4999999999999999999999996 9999999864     588999999999999999999965  4568999999999


Q ss_pred             CCCC
Q psy11609         74 HDVD   77 (83)
Q Consensus        74 ~g~~   77 (83)
                      .-.+
T Consensus        83 ~p~~   86 (96)
T d2disa1          83 EPEI   86 (96)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            7433

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=5.7e-19  Score=110.52  Aligned_cols=73  Identities=10%  Similarity=0.083  Sum_probs=66.6

Q ss_pred             eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHh--hcCCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAIL--GSHEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~--~~ng~~~~g~~i~V~~a~g~   76 (83)
                      +|||+++..+ ..+++|++.|++||+|.+|.++.  ++|+|||+|.++++|.+|++  .+|+..|.|++|+|++++.+
T Consensus        20 ~l~v~nLp~~~~te~~l~~~F~~fG~V~~v~~~~--~k~~afV~f~~~~~A~~Ai~~~~~~~~~~~gr~l~V~~s~~~   95 (99)
T d1x4fa1          20 VIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR--MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY   95 (99)
T ss_dssp             EEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred             EEEEeCCcCCccCHHHHHhhhccccceeEEEEee--cCCcEEEEecchHHHHHHHHHHhcCCceECCEEEEEEEcCCc
Confidence            7999999876 67788999999999999999986  57999999999999999998  68899999999999999854

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.2e-18  Score=104.98  Aligned_cols=73  Identities=12%  Similarity=0.071  Sum_probs=67.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhc--CCceecCeeeEEEecCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS--HEKHFFGCKIDVSPYHDV   76 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~--ng~~~~g~~i~V~~a~g~   76 (83)
                      ||||+++..+..+++|++.|++||.|.++++++  +++||||+|.++|+|+.|+..|  ++..+.|++|+|..+.-.
T Consensus        10 ~l~V~nLp~~~t~~~L~~~f~~~G~i~~v~~~~--~~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~sk~~   84 (88)
T d2cq1a1          10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLK--GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK   84 (88)
T ss_dssp             EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHhcccccccccccc--cceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEECCCC
Confidence            799999999999999999999999999999986  5789999999999999999865  678999999999998643

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=8.1e-18  Score=105.48  Aligned_cols=74  Identities=15%  Similarity=0.187  Sum_probs=67.5

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhc--CCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS--HEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~--ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||.+++.+..+++|++.|++||+|.+|++.+  ++++|||+|.++|+|+.|++.+  ++..+.|++|+|..+...+
T Consensus        17 ~l~v~nlp~~~te~~l~~~F~~fG~I~~~~~~~--~k~~AfV~f~~~e~A~~ai~~~~~~~~~~~g~~l~v~~s~~~~   92 (104)
T d1wexa_          17 VVHVRGLCESVVEADLVEALEKFGTICYVMMMP--FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR   92 (104)
T ss_dssp             EEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred             EEEEeCCCCCCCHHHHHHhhhhcccceEEEEEe--cceeEEEEeCCHHHHHHHHHHHcCCCcEEeeEEEEEEEcCCCc
Confidence            699999999999999999999999999999976  6899999999999999999987  5678899999999987543

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=6.4e-18  Score=104.04  Aligned_cols=72  Identities=17%  Similarity=0.148  Sum_probs=65.5

Q ss_pred             eEeeeecCCc-chhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhc--CCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDT-SLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGS--HEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~-~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~--ng~~~~g~~i~V~~a~g   75 (83)
                      +|||+++... +++++|++.|++||+|.+|+++.  ++++|||+|.++++|.+|+..+  ++..+.|+||+|+.++.
T Consensus        10 ~v~v~nl~~~~~t~~eL~~lF~~fG~I~~i~i~~--~k~~afV~f~~~~~A~~A~~~l~~~~~~~~gr~l~V~~s~~   84 (89)
T d1x4da1          10 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN--KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQK   84 (89)
T ss_dssp             EEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS--SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECC
T ss_pred             EEEEECCCCCcCCHHHHHHHHHhhCCeEEEEeec--cceEEEEEEcchhhHHHHHHHHhhCCCccCCceEEEEECCC
Confidence            6999999875 67899999999999999999987  5679999999999999999955  78899999999999974

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.9e-18  Score=106.19  Aligned_cols=75  Identities=11%  Similarity=0.057  Sum_probs=67.6

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCCc
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVDF   78 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~~   78 (83)
                      +|||.+|+.++.+++|++.|+.||.+ +|.++.+.   ++|||||.|.++++|++|++ |||+.|.||+|.|.++..+..
T Consensus        17 ~v~v~nLp~~~te~dl~~~F~~~~~~-~v~~~~~~~g~~~G~afVeF~~~~~a~~Al~-~~~~~i~gR~I~V~~s~~~~~   94 (102)
T d1weza_          17 CVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTAGT   94 (102)
T ss_dssp             EEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHhccCcc-eeeeEEecCCcceEEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEcCCCCC
Confidence            79999999999999999999999965 58888876   48999999999999999985 899999999999998876543

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.2e-18  Score=107.86  Aligned_cols=64  Identities=20%  Similarity=0.178  Sum_probs=58.6

Q ss_pred             cchhhHHHHHhccCCceeEEEEeccC------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609         11 TSLKDGLYHEYKKHGKVSWVKIIGQG------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus        11 ~~~~d~L~~eF~kfG~Itsv~V~~d~------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +.+.++|+++|++||.|.+|+|+++.      +.|++||.|+++|+|.+|++.|||+++.||+|.|..++
T Consensus        25 ~~i~edi~~e~~k~G~v~~v~I~~~~~~~~~~~~g~vfV~f~~~e~A~~A~~~l~Gr~f~gR~v~v~f~~   94 (104)
T d1o0pa_          25 EEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD   94 (104)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEECCCCTTSSSCTTCCEEEEEESCHHHHHHHHHHHSSCCSSSSCCEEEEEC
T ss_pred             HHHHHHHHHHhcccCceEEEEEeecCCCCccCCceEEEEEECCHHHHHHHHHHHCCCEECCeEEEEEEcC
Confidence            35778899999999999999998754      35899999999999999999999999999999999986

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.2e-18  Score=105.69  Aligned_cols=72  Identities=21%  Similarity=0.080  Sum_probs=64.7

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEe-ccC---CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKII-GQG---GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~-~d~---~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||++|+.++.+++|.+.|+.||.|..+.++ .+.   ++|||||.|.++++|++|+. +||..|.|++|.|.++.
T Consensus        10 ~v~v~nLp~~~t~~~l~~~F~~~g~i~~~~~~~~~~~g~~~G~afV~F~s~~~a~~Al~-~n~~~i~gr~i~V~~~~   85 (103)
T d2cpya1          10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSER-LHRKKLNGREAFVHVVT   85 (103)
T ss_dssp             EEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGG-GCSEEETTEEEEEEEEC
T ss_pred             EEEEeCCCCCCCHHHHhhhhcccceEEEEEEEEeCCCCCcCccEEEEECCHHHHHHHHh-cCCCeECCcEEEEEECC
Confidence            79999999999999999999999999864444 433   69999999999999999995 99999999999999875

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.1e-17  Score=103.41  Aligned_cols=76  Identities=13%  Similarity=0.049  Sum_probs=68.3

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCCCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHDVD   77 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g~~   77 (83)
                      +|||.+|+.++.+++|++.|+.||.|.++.++.+.    ++|||||.|.++|+|++|++ +|+..|.||+|+|.++...+
T Consensus        17 ~v~v~nLP~~~te~dI~~~F~~~g~v~~~v~~~~~~~~~~kG~afV~F~~~e~a~~a~~-~~~~~i~gR~i~V~~~~~~~   95 (104)
T d1wg5a_          17 FVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALK-KHKERIGHRYIEIFKSSRAE   95 (104)
T ss_dssp             EEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHT-TTTCCSSSSCCEEEEECTTT
T ss_pred             EEEEeCCCCCCCHHHHHHHHHhcCCceEEEEEEeCCCCCcceEEEEEeCCHHHHHHHHh-hCCCEEcceEEEEEECCHHH
Confidence            69999999999999999999999999986666654    58999999999999999995 99999999999999987654


Q ss_pred             c
Q psy11609         78 F   78 (83)
Q Consensus        78 ~   78 (83)
                      .
T Consensus        96 ~   96 (104)
T d1wg5a_          96 V   96 (104)
T ss_dssp             S
T ss_pred             h
Confidence            3

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=5e-17  Score=107.48  Aligned_cols=73  Identities=15%  Similarity=0.318  Sum_probs=68.1

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +|||++++.+..+++|++.|+.||.|..|.|+.+.    ++|||||.|.++++|++|+. +++..+.|++|.|..|+-
T Consensus        99 ~i~V~~lp~~~te~~L~~~f~~~G~v~~~~i~~~~~~~~~~g~~fV~f~~~e~A~~Al~-~~~~~~~G~~i~V~~A~~  175 (183)
T d1u1qa_          99 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKALS  175 (183)
T ss_dssp             EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHT-SSCEEETTEEEEEEECCC
T ss_pred             eeEEccCCCcCCHHHHhhhhccCCceeeeeeecccccCccceeEEEEECCHHHHHHHHH-hCCCeECCEEEEEEecCC
Confidence            79999999999999999999999999999999875    47899999999999999996 799999999999998864

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.3e-17  Score=105.19  Aligned_cols=71  Identities=17%  Similarity=0.319  Sum_probs=64.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCc-hHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKA-DDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~p-EdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +.||++|++++.+++|+..|++||+|.+|.|+.  ++|||||+|.++ ++|.+|+.+|||..+.++.+.|..+.
T Consensus        13 ~~fvgnL~~~~tee~Lk~~F~~fG~V~~v~i~~--~kg~gfV~F~~~~~~A~~a~~~~~~~~l~~~~~~v~~~~   84 (113)
T d1owxa_          13 LKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR--GAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV   84 (113)
T ss_dssp             EEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT--TCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHHhcCChheEEEec--CCceEEEEecCcHHHHHHHHHHhcCCceecCceEEEEee
Confidence            569999999999999999999999999999986  589999999998 78999999999999888888776655

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.5e-17  Score=105.60  Aligned_cols=72  Identities=19%  Similarity=0.211  Sum_probs=64.8

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYH   74 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~   74 (83)
                      +|||.+|+.++.+++|.+.|+.||.|..+.++.+.    +.|||||.|.++|+|++|+. |||..|.|++|.|..+.
T Consensus        20 ~i~v~nLp~~~t~~di~~~F~~~g~~~~~~~~~~~~~g~~~G~afVeF~~~e~a~~al~-~~~~~i~gR~i~V~~~~   95 (112)
T d1wela1          20 CVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT   95 (112)
T ss_dssp             EEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred             EEEEecCCCcCcHHHHhhHHhhccccccceeeecCcccceeeEEEEEECCHHHHHHHHH-cCCCcCCCEEEEEEEcC
Confidence            79999999999999999999999999765555433    58999999999999999995 99999999999998875

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.7e-17  Score=103.48  Aligned_cols=69  Identities=12%  Similarity=0.182  Sum_probs=59.7

Q ss_pred             eEee--eecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCcee-cCeeeEEEe
Q psy11609          2 ALFI--YVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHF-FGCKIDVSP   72 (83)
Q Consensus         2 ~lfv--~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~-~g~~i~V~~   72 (83)
                      +|||  ++|+.+..+++|++.|++||+|++|+++.  +++||||.|.+.|+|.+|++.|||+.+ .|+++.+.+
T Consensus        20 ~l~V~ng~L~~~vte~~L~~~F~~~G~i~~i~~~~--~k~~aFV~f~~~e~A~~A~~~lng~~i~~~~~~~i~~   91 (101)
T d2cq2a1          20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL   91 (101)
T ss_dssp             EEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT--TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred             eEEEECCCCCCCCCHHHHHHHHHhhCcccEEeecc--CccEEEEEECCHHHHHHHHHHhCCCCCCCCCCcEEEE
Confidence            5777  56999999999999999999999998876  578999999999999999999999866 555555444

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.3e-18  Score=105.07  Aligned_cols=72  Identities=10%  Similarity=0.216  Sum_probs=64.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC---------CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEe
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG---------GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSP   72 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~---------~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~   72 (83)
                      .|||++++.+..+++|.+.|++||.|.++.++...         ++|||||.|+++|+|++|+ +|||..+.|++|+|..
T Consensus         3 rlyVgNLp~~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~-~l~g~~~~Gr~l~V~r   81 (90)
T d1u2fa_           3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR   81 (90)
T ss_dssp             EEEECSCCTTCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGG-GGSSCCSSSSCCCCBC
T ss_pred             EEEEcCCCCccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHH-hhCCcEECCEEEEECC
Confidence            59999999999999999999999999888775322         6899999999999999998 5999999999999975


Q ss_pred             cC
Q psy11609         73 YH   74 (83)
Q Consensus        73 a~   74 (83)
                      +.
T Consensus        82 ~k   83 (90)
T d1u2fa_          82 PH   83 (90)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=3.7e-16  Score=95.40  Aligned_cols=70  Identities=16%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCee-eEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCK-IDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~-i~V~~a~g   75 (83)
                      .+||++++.+..++.|. +|++||+|.++++..  +++||||+|+++++|++|++ +||+.|.|+. |.|.+.+-
T Consensus         6 wV~V~G~p~~~~~~il~-~F~~~G~I~~~~~~~--~~~~~fV~f~~~~~A~~Al~-~nG~~~~g~~~vgV~~~~~   76 (81)
T d1wwha1           6 WVTVFGFPQASASYILL-QFAQYGNILKHVMSN--TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCID   76 (81)
T ss_dssp             EEEEECCCGGGHHHHHH-HHHTTSCEEEEEECS--SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECCC
T ss_pred             EEEEECCChHHHHHHHH-HHHhhhhhheEEecC--CCCEEEEEEcccHHHHHHHh-cCCCeECCcEEEEEEeCCC
Confidence            47999999988876675 699999999998754  68999999999999999995 9999999975 57888764

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.9e-14  Score=94.85  Aligned_cols=73  Identities=14%  Similarity=0.261  Sum_probs=65.2

Q ss_pred             eEeeeecCCcchhhHHHHHhccCCceeEEEEeccC----CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          2 ALFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG----GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         2 ~lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~----~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      ||||++++.+..+++|++.|++||.|.+++++.+.    ++|||||+|.++++|+.|+.. ++..+.++++.+.....
T Consensus         8 ~lfV~nLp~~~te~~L~~~F~~~G~v~~~~~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-~~~~~~~~~~~~~~~~~   84 (183)
T d1u1qa_           8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVS   84 (183)
T ss_dssp             EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHHHcCCEEEEEeeecccCCCccCceecccCCHHHHHHHHHh-cCCcccccchhhhhhhh
Confidence            79999999999999999999999999999999875    589999999999999999865 66778888888876653

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2.5e-07  Score=55.62  Aligned_cols=69  Identities=25%  Similarity=0.195  Sum_probs=62.3

Q ss_pred             ecCCcchhhHHHHHhccCCceeEEEEeccC-CceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEecCC
Q psy11609          7 VVSDTSLKDGLYHEYKKHGKVSWVKIIGQG-GDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPYHD   75 (83)
Q Consensus         7 k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~-~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a~g   75 (83)
                      +++-..+++.|...|++||+|-+|.|.... ..-.|-|.-.+.+||.-|+..++.+-|++|+|.|+++.|
T Consensus         3 ~L~~kelqq~L~~~f~~h~~V~sv~l~~~~dg~~~A~V~v~~~q~A~~~v~~LhR~KiG~KRI~Vs~~~~   72 (73)
T d2dgxa1           3 RLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATG   72 (73)
T ss_dssp             TSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred             cCCHHHHHHHHHHHHHhheeEEEEEEEeccCCcEEEEEEcCCHHHHHHHHHHHHHHhcCCeEEEEEEecC
Confidence            456677888999999999999999997654 477999999999999999999999999999999999876

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=1.1e-05  Score=50.38  Aligned_cols=59  Identities=19%  Similarity=0.211  Sum_probs=52.8

Q ss_pred             CcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhhcCCceecCeeeEEEec
Q psy11609         10 DTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILGSHEKHFFGCKIDVSPY   73 (83)
Q Consensus        10 d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~~ng~~~~g~~i~V~~a   73 (83)
                      |+.+...|-+.|+.||+|.=|+.+.+    =..|+|++-+.|-+|+ .++|..+.|+.|.|..-
T Consensus        34 De~l~~~Llq~l~~~GeViLvRFv~d----~mwVTF~dG~SAL~al-~l~g~~v~G~~l~It~~   92 (95)
T d1ufwa_          34 PEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVL-DVDGMKVKGRAVKISGP   92 (95)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHH-HGGGSEETTEEEEEECC
T ss_pred             CHHHHHHHHHHHhhCCeEEEEEEeCC----eEEEEECCcHHHHHHh-ccCCeEEcceEEEEecC
Confidence            66777889999999999999998775    6899999999999998 78999999999998753

>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Smg-4/UPF3
domain: RNA processing protein UPF3x, RRM domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.27  Score=29.25  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=47.0

Q ss_pred             eeecCCcchhhHHHHHhccCCceeEEEEeccC------CceEEEEEeCCchHHHHHHhhcCCceecC
Q psy11609          5 IYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQG------GDRYGLVCFKKADDAEKAILGSHEKHFFG   65 (83)
Q Consensus         5 v~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~------~~g~afV~F~~pEdA~~A~~~~ng~~~~g   65 (83)
                      |-+|...-.++.+.+..+..|++....-+.-.      .---|||.|+++|+...-.+..+|..|-+
T Consensus         6 vRrLPP~Lte~~F~~~l~~~~~~d~~~f~~Gk~s~~~~~~SRAYi~F~~~~~v~~F~~~f~g~~F~D   72 (91)
T d1uw4a_           6 IRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD   72 (91)
T ss_dssp             EEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred             EecCCCCCCHHHHHHHhCCcCceEEEEEeCCCcCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEc
Confidence            44555555666699999999998876544422      24589999999999999999999998854

>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-specific ribonuclease PARN
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.06  E-value=0.23  Score=30.34  Aligned_cols=51  Identities=14%  Similarity=0.296  Sum_probs=38.2

Q ss_pred             EeeeecCCcchhhHHHHHhccCCceeEEEEeccCCceEEEEEeCCchHHHHHHhh
Q psy11609          3 LFIYVVSDTSLKDGLYHEYKKHGKVSWVKIIGQGGDRYGLVCFKKADDAEKAILG   57 (83)
Q Consensus         3 lfv~k~~d~~~~d~L~~eF~kfG~Itsv~V~~d~~~g~afV~F~~pEdA~~A~~~   57 (83)
                      +|...-.-.=-.-+|.+.|+.||.|. |.-+.   +--|||...+.|+|+.++..
T Consensus        18 Vf~~tFP~~Wk~~dI~~lFSpfG~V~-VswId---dTSa~V~L~~~e~~~~v~~~   68 (100)
T d1whva_          18 VLHVTFPKEWKTSDLYQLFSAFGNIQ-ISWID---DTSAFVSLSQPEQVQIAVNT   68 (100)
T ss_dssp             EEEEECCTTCCHHHHHHHHTTTCSCC-CEEEE---TTEEEEECSCHHHHHHHHHH
T ss_pred             eEEEeCCcccchhHHHHHhcCCCceE-EEEec---CceEEEEecCHHHHHHHHHH
Confidence            34444444555667999999999999 44444   34899999999999988754