Psyllid ID: psy11684

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MCCKVLSAAHNSIPLFKHHSKMSRPMFKLFYPASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANSNFWFNSQQV
Secondary Structure (PSIPRED)
ccHHHHHHccccccccccccccccccccccccccccccEEccEEEEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccEEEEEHHHHHHHHHcccccccHHHHHHHHHccccccccccccccHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHccccccHccccccccccccccccccccHHHHHccHHHEEEEEccccccccEEEEEEEcccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEEEcHHHHHHHHccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MCCKVLSaahnsiplfkhhskmsrpmfklfypasggakcVEGMSKSIRLArygctnrpfYHIVVIHssehsvglahidkkwssklyvrrcvnvkssehsvglAHIDKKWSSKitrmrrndqpieqlgtfdplpneyQEKLVSLNIERIRYwlgtsdihitSPVRELFGKlnidltnlcdlrpsqwlansnfwfnsqqv
Flexible Loop (DISEMBL)
MCCKVLSAahnsiplfkhhskmsRPMFKLFYPASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIdkkwssklyVRRCVNvkssehsvglahidkkwsskitrmrrndqpieqlgtfdplpneYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDlrpsqwlansnfwfnsqqv
Low Complexity Region (SEG)
MCCKVLSAAHNSIPLFKHHSKMSRPMFKLFYPASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANSNFWFNSQQV
Disordered region (IsUnstruct)
****VLSAAHNSIPLFKHHSKMSRPMFKLFYPASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKI************LGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANSNFWF*****
Disordered Region (DISOPRED)
*******AAHNSIPLFKHHSKM****************CVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKS*************************QPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPS***************
Disordered Region (DISEMBL)
MCCKVLSAAHNSIPLFKHHSKMSRPMFKLFYPASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANSNFWFNSQQV
Disordered Region (DISPRO)
MCCKVLSAAHNSIPLFKHHSKMSRPMFKLFYPASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNV************************RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANSNFWFNS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCCKVLSAAHNSIPLFKHHSKMSRPMFKLFYPASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANSNFWFNSQQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q9V6Y3	129	Probable 28S ribosomal pr	yes	N/A	0.510	0.782	0.346	3e-17
Q10129	147	Probable 28S ribosomal pr	yes	N/A	0.464	0.625	0.326	7e-14
Q9CPX7	135	28S ribosomal protein S16	yes	N/A	0.419	0.614	0.320	3e-12
Q5REY4	137	28S ribosomal protein S16	yes	N/A	0.419	0.605	0.328	3e-12
P82915	135	28S ribosomal protein S16	yes	N/A	0.419	0.614	0.320	3e-12
Q9Y3D3	137	28S ribosomal protein S16	yes	N/A	0.419	0.605	0.328	4e-12
O43020	96	Probable 37S ribosomal pr	yes	N/A	0.328	0.677	0.277	2e-05
Q2RV59	124	30S ribosomal protein S16	yes	N/A	0.343	0.548	0.304	2e-05
A8LMC0	130	30S ribosomal protein S16	yes	N/A	0.323	0.492	0.288	4e-05
P08580	107	Ribosomal protein S16, mi	N/A	N/A	0.323	0.598	0.271	4e-05

>sp|Q9V6Y3|RT16_DROME Probable 28S ribosomal protein S16, mitochondrial OS=Drosophila melanogaster GN=mRpS16 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 70/156 (44%), Gaps = 55/156 (35%)

Query: 32  PASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCV 91
           PASG  +     +K IR  R GCTNRPFYHIVV+                          
Sbjct: 5   PASGIGRFYAKSAKIIRFVRLGCTNRPFYHIVVME------------------------- 39

Query: 92  NVKSSEHSVGLAHIDKKWSSKITRMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRY 150
                                  R +   QP IEQ+G+FDPLPN+Y E+LV+LN ERIRY
Sbjct: 40  -----------------------RRKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRY 76

Query: 151 WLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWL 186
           WLG    H+++P  EL G     +  L  + P  ++
Sbjct: 77  WLG-KGAHLSTPAAELLG-----IAGLLPIHPRTYM 106

Drosophila melanogaster (taxid: 7227)

>sp|Q10129|RT16_CAEEL Probable 28S ribosomal protein S16, mitochondrial OS=Caenorhabditis elegans GN=F56D1.3 PE=3 SV=2

 Score = 77.0 bits (188), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 67/141 (47%), Gaps = 49/141 (34%)

Query: 46  SIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHI 105
           SI LA +GCTNRPFYH+ V                                + ++G    
Sbjct: 14  SIGLALFGCTNRPFYHVCVF------------------------------PDRALG---- 39

Query: 106 DKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRE 165
            +++   I         +EQ+GTFDPLPN+  EKLV+LN  R++YW+G  + HI+ PV E
Sbjct: 40  -RRYEGNI---------LEQVGTFDPLPNQKNEKLVALNFGRLKYWIGERNAHISVPVLE 89

Query: 166 LFGKLNIDLTNLCDLRPSQWL 186
           L G     L+ L  + P  ++
Sbjct: 90  LLG-----LSGLFPIHPKSFI 105

Caenorhabditis elegans (taxid: 6239)

>sp|Q9CPX7|RT16_MOUSE 28S ribosomal protein S16, mitochondrial OS=Mus musculus GN=Mrps16 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 48/131 (36%)

Query: 38  KCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSE 97
           K   G   +IRLA  GCTNRPFY IV  H+                              
Sbjct: 10  KAYHGGHLTIRLALGGCTNRPFYRIVAAHN------------------------------ 39

Query: 98  HSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDI 157
                            +  R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    
Sbjct: 40  -----------------KCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-A 81

Query: 158 HITSPVRELFG 168
           H++ P+ +L G
Sbjct: 82  HLSKPMEKLLG 92

Mus musculus (taxid: 10090)

>sp|Q5REY4|RT16_PONAB 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 48/131 (36%)

Query: 38  KCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSE 97
           K   G   +IRLA  GCTNRPFY IV  H+                     +C       
Sbjct: 10  KAYRGGHLTIRLALGGCTNRPFYRIVAAHN---------------------KCP------ 42

Query: 98  HSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDI 157
                               R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    
Sbjct: 43  --------------------RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-A 81

Query: 158 HITSPVRELFG 168
           H++ P+ +L G
Sbjct: 82  HLSKPMEKLLG 92

Pongo abelii (taxid: 9601)

>sp|P82915|RT16_BOVIN 28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16 PE=1 SV=2

 Score = 71.6 bits (174), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 48/131 (36%)

Query: 38  KCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSE 97
           K   G   +IRLA  GCTNRPFY IV  H+                              
Sbjct: 10  KAYRGGHLTIRLALGGCTNRPFYRIVAAHN------------------------------ 39

Query: 98  HSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDI 157
                            +  R+ + +EQLG++DP+PN + EKLV+LN++RIR+W+G    
Sbjct: 40  -----------------KCPRDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCG-A 81

Query: 158 HITSPVRELFG 168
           H++ PV +L G
Sbjct: 82  HLSKPVEKLLG 92

Bos taurus (taxid: 9913)

>sp|Q9Y3D3|RT16_HUMAN 28S ribosomal protein S16, mitochondrial OS=Homo sapiens GN=MRPS16 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 61/131 (46%), Gaps = 48/131 (36%)

Query: 38  KCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSE 97
           K   G   +IRLA  GCTNRPFY IV  H+                     +C       
Sbjct: 10  KAYRGGHLTIRLALGGCTNRPFYRIVAAHN---------------------KCP------ 42

Query: 98  HSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDI 157
                               R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    
Sbjct: 43  --------------------RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-A 81

Query: 158 HITSPVRELFG 168
           H++ P+ +L G
Sbjct: 82  HLSKPMEKLLG 92

Homo sapiens (taxid: 9606)

>sp|O43020|RT16_SCHPO Probable 37S ribosomal protein S16, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrps16 PE=3 SV=2

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 45/119 (37%), Gaps = 54/119 (45%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           M   IRLAR+G  NRPFYHIVV ++                                   
Sbjct: 1   MVVKIRLARHGVRNRPFYHIVVANA----------------------------------- 25

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQE-------KLVSLNIERIRYWLGT 154
                 W +         +PIE +GTFDP+P +          K + LN+ER +YW+  
Sbjct: 26  ------WKAP------QAKPIETIGTFDPIPKKIDSQDSIPRIKDIQLNVERFKYWISV 72

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q2RV59|RS16_RHORT 30S ribosomal protein S16 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rpsP PE=3 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 43/115 (37%), Gaps = 47/115 (40%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           MS  IRLAR G   RPFY IVV  S                                   
Sbjct: 1   MSLRIRLARGGAKKRPFYRIVVADS----------------------------------- 25

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDI 157
                       R  R+ + IE+LGTFDP+     E+ V L  ER++YWLG   +
Sbjct: 26  ------------RSPRDGRFIEKLGTFDPMLPRDHERRVVLKDERVKYWLGVGAL 68

Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) (taxid: 269796)

>sp|A8LMC0|RS16_DINSH 30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 44/111 (39%), Gaps = 47/111 (42%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           M+  IRLAR G   RPFY IV   S                                   
Sbjct: 1   MAMKIRLARGGSKKRPFYRIVAADS----------------------------------- 25

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
                       RM R+ + IE+LGT++PL  +  E  V +++ER++YWLG
Sbjct: 26  ------------RMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYWLG 64

Dinoroseobacter shibae (strain DFL 12) (taxid: 398580)

>sp|P08580|RT16_NEUCR Ribosomal protein S16, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyt-21 PE=3 SV=2

 Score = 48.1 bits (113), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 54/118 (45%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           M   +RLAR+G TN PFY+IVV H+                                   
Sbjct: 1   MVLKLRLARFGRTNAPFYNIVVAHA----------------------------------- 25

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLP--NEYQE-----KLVSLNIERIRYWLG 153
                       R  RN +P+E +GT+DP+P  + Y       K + L++ R +YW+G
Sbjct: 26  ------------RTARNSKPLEVIGTYDPVPKKDTYDTTGKLHKDIKLDVTRAKYWIG 71

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
240848827	134	28S ribosomal protein S16-like [Acyrthos	0.590	0.873	0.364	5e-18
170047262	136	28S ribosomal protein S16 [Culex quinque	0.545	0.794	0.361	2e-16
157123704	139	28S ribosomal protein S16, mitochondrial	0.545	0.776	0.355	3e-16
17647683	129	mitochondrial ribosomal protein S16, iso	0.510	0.782	0.346	2e-15
194883164	129	GG22441 [Drosophila erecta] gi|190658860	0.510	0.782	0.346	3e-15
195583302	129	GD25699 [Drosophila simulans] gi|1941934	0.510	0.782	0.346	3e-15
195334264	129	GM20227 [Drosophila sechellia] gi|194125	0.510	0.782	0.346	3e-15
307210621	137	Probable 28S ribosomal protein S16, mito	0.439	0.635	0.355	4e-15
307182268	134	Probable 28S ribosomal protein S16, mito	0.439	0.649	0.355	4e-15
195485878	129	GE12332 [Drosophila yakuba] gi|194177372	0.510	0.782	0.339	9e-15

>gi|240848827|ref|NP_001155501.1| 28S ribosomal protein S16-like [Acyrthosiphon pisum] gi|239790487|dbj|BAH71801.1| ACYPI002879 [Acyrthosiphon pisum]

 Score = 96.3 bits (238), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 79/173 (45%), Gaps = 56/173 (32%)

Query: 26  MFKLFYPASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKL 85
           + K   P+SGG    E   KSIRLARYGCTNRPFYHIVV+                   L
Sbjct: 6   LLKKLMPSSGGGDDFEKAKKSIRLARYGCTNRPFYHIVVV-------------------L 46

Query: 86  YVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNI 145
             R C            AH                 PIEQLGT+DP+ N   EKLVS N+
Sbjct: 47  QRRDC-----------RAH-----------------PIEQLGTYDPMENHNGEKLVSFNL 78

Query: 146 ERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANSNFWFNSQQV 198
           ERI+YW+      +T+PV EL G     L+    + P  ++     W N Q++
Sbjct: 79  ERIKYWMA-KKARVTNPVAELLG-----LSGFLPIHPHTYMTA---WRNRQKI 122

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170047262|ref|XP_001851147.1| 28S ribosomal protein S16 [Culex quinquefasciatus] gi|167869728|gb|EDS33111.1| 28S ribosomal protein S16 [Culex quinquefasciatus]

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/166 (36%), Positives = 77/166 (46%), Gaps = 58/166 (34%)

Query: 32  PASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCV 91
           PASG  +     +K IR AR GCTNRPF+HIVV+                      R+C 
Sbjct: 5   PASGTGRFWAKSAKIIRFARQGCTNRPFFHIVVMER--------------------RKC- 43

Query: 92  NVKSSEHSVGLAHIDKKWSSKITRMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRY 150
                                        QP IEQ+GT+DP+PNE+ EKLVS N ER+RY
Sbjct: 44  ---------------------------QYQPVIEQIGTYDPIPNEHNEKLVSFNFERVRY 76

Query: 151 WLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANSNFWFNSQ 196
           WLG S  H+++PV EL G     +  L  + P  ++   N W N Q
Sbjct: 77  WLG-SGAHLSTPVAELLG-----VAGLLPVHPRTYM---NAWRNRQ 113

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157123704|ref|XP_001653853.1| 28S ribosomal protein S16, mitochondrial [Aedes aegypti] gi|108874273|gb|EAT38498.1| AAEL009608-PA [Aedes aegypti]

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/166 (35%), Positives = 76/166 (45%), Gaps = 58/166 (34%)

Query: 32  PASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCV 91
           PASG  K     +K IR AR+GCTNRPFYHIVV+                          
Sbjct: 5   PASGTGKFWAHSAKIIRFARHGCTNRPFYHIVVME------------------------- 39

Query: 92  NVKSSEHSVGLAHIDKKWSSKITRMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRY 150
                                  R +   QP IEQ+GT+DP+PNE  EKLVS N ER+R+
Sbjct: 40  -----------------------RRKGQHQPVIEQIGTYDPIPNENNEKLVSFNFERVRH 76

Query: 151 WLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANSNFWFNSQ 196
           WLG S  H+++PV EL G     +  L  + P  +++    W N Q
Sbjct: 77  WLG-SGAHLSTPVAELLG-----IAGLLPVHPRTYMSA---WRNRQ 113

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17647683|ref|NP_523737.1| mitochondrial ribosomal protein S16, isoform A [Drosophila melanogaster] gi|442623667|ref|NP_001260967.1| mitochondrial ribosomal protein S16, isoform B [Drosophila melanogaster] gi|442623669|ref|NP_001260968.1| mitochondrial ribosomal protein S16, isoform C [Drosophila melanogaster] gi|13633945|sp|Q9V6Y3.1|RT16_DROME RecName: Full=Probable 28S ribosomal protein S16, mitochondrial; Short=MRP-S16; Short=S16mt gi|7303221|gb|AAF58284.1| mitochondrial ribosomal protein S16, isoform A [Drosophila melanogaster] gi|21430784|gb|AAM51070.1| SD15809p [Drosophila melanogaster] gi|220959230|gb|ACL92158.1| mRpS16-PA [synthetic construct] gi|440214382|gb|AGB93499.1| mitochondrial ribosomal protein S16, isoform B [Drosophila melanogaster] gi|440214383|gb|AGB93500.1| mitochondrial ribosomal protein S16, isoform C [Drosophila melanogaster]

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 70/156 (44%), Gaps = 55/156 (35%)

Query: 32  PASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCV 91
           PASG  +     +K IR  R GCTNRPFYHIVV+                          
Sbjct: 5   PASGIGRFYAKSAKIIRFVRLGCTNRPFYHIVVME------------------------- 39

Query: 92  NVKSSEHSVGLAHIDKKWSSKITRMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRY 150
                                  R +   QP IEQ+G+FDPLPN+Y E+LV+LN ERIRY
Sbjct: 40  -----------------------RRKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRY 76

Query: 151 WLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWL 186
           WLG    H+++P  EL G     +  L  + P  ++
Sbjct: 77  WLG-KGAHLSTPAAELLG-----IAGLLPIHPRTYM 106

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194883164|ref|XP_001975673.1| GG22441 [Drosophila erecta] gi|190658860|gb|EDV56073.1| GG22441 [Drosophila erecta]

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 70/156 (44%), Gaps = 55/156 (35%)

Query: 32  PASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCV 91
           PASG  +     +K IR  R GCTNRPFYHIVV+                          
Sbjct: 5   PASGIGRFYVKSAKIIRFVRLGCTNRPFYHIVVME------------------------- 39

Query: 92  NVKSSEHSVGLAHIDKKWSSKITRMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRY 150
                                  R +   QP IEQ+G+FDPLPN+Y E+LV+LN ERIRY
Sbjct: 40  -----------------------RRKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRY 76

Query: 151 WLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWL 186
           WLG    H+++P  EL G     +  L  + P  ++
Sbjct: 77  WLG-KGAHLSTPAAELLG-----IAGLLPIHPRTYM 106

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195583302|ref|XP_002081462.1| GD25699 [Drosophila simulans] gi|194193471|gb|EDX07047.1| GD25699 [Drosophila simulans]

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 69/156 (44%), Gaps = 55/156 (35%)

Query: 32  PASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCV 91
           PASG  +     +K IR  R GCTNRPFYHIVV+                          
Sbjct: 5   PASGIGRFYAKSAKIIRFVRLGCTNRPFYHIVVME------------------------- 39

Query: 92  NVKSSEHSVGLAHIDKKWSSKITRMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRY 150
                                  R +   QP IEQ+G+FDPLPN Y E+LV+LN ERIRY
Sbjct: 40  -----------------------RRKNQHQPVIEQVGSFDPLPNSYNERLVALNTERIRY 76

Query: 151 WLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWL 186
           WLG    H+++P  EL G     +  L  + P  ++
Sbjct: 77  WLGKGA-HLSTPAAELLG-----IAGLLPIHPRTYM 106

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195334264|ref|XP_002033804.1| GM20227 [Drosophila sechellia] gi|194125774|gb|EDW47817.1| GM20227 [Drosophila sechellia]

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 69/156 (44%), Gaps = 55/156 (35%)

Query: 32  PASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCV 91
           PASG  +     +K IR  R GCTNRPFYHIVV+                          
Sbjct: 5   PASGIGRFYAKSAKIIRFVRLGCTNRPFYHIVVME------------------------- 39

Query: 92  NVKSSEHSVGLAHIDKKWSSKITRMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRY 150
                                  R +   QP IEQ+G+FDPLPN Y E+LV+LN ERIRY
Sbjct: 40  -----------------------RRKNQHQPVIEQVGSFDPLPNNYNERLVALNTERIRY 76

Query: 151 WLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWL 186
           WLG    H+++P  EL G     +  L  + P  ++
Sbjct: 77  WLGKGA-HLSTPAAELLG-----IAGLLPIHPRTYM 106

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210621|gb|EFN87066.1| Probable 28S ribosomal protein S16, mitochondrial [Harpegnathos saltator]

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 60/135 (44%), Gaps = 48/135 (35%)

Query: 34  SGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNV 93
           S G   V     SIR  RYGC NRPFYH++V++   H                       
Sbjct: 12  SSGTGIVGRFKTSIRFVRYGCANRPFYHLIVMNLKAH----------------------- 48

Query: 94  KSSEHSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
                                   +   PIEQLGT+DP+PN+Y EKLVS N ERI+YWL 
Sbjct: 49  ------------------------QKQPPIEQLGTYDPIPNKYNEKLVSFNFERIQYWLA 84

Query: 154 TSDIHITSPVRELFG 168
               H+++PV EL G
Sbjct: 85  KGS-HVSTPVAELLG 98

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182268|gb|EFN69587.1| Probable 28S ribosomal protein S16, mitochondrial [Camponotus floridanus]

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 60/135 (44%), Gaps = 48/135 (35%)

Query: 34  SGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNV 93
           S G   +   +K+IR  RYGCTNRPFYHI+VI                            
Sbjct: 9   SSGTSIITPFAKAIRFVRYGCTNRPFYHIIVID--------------------------- 41

Query: 94  KSSEHSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
                                + R    PIEQ+GT+DP+PN Y EKLVS N ERI+YWL 
Sbjct: 42  --------------------VKKRHKKPPIEQVGTYDPIPNIYNEKLVSFNFERIQYWL- 80

Query: 154 TSDIHITSPVRELFG 168
           T    ++ PV +L G
Sbjct: 81  TKGAQVSKPVADLLG 95

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195485878|ref|XP_002091271.1| GE12332 [Drosophila yakuba] gi|194177372|gb|EDW90983.1| GE12332 [Drosophila yakuba]

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 70/156 (44%), Gaps = 55/156 (35%)

Query: 32  PASGGAKCVEGMSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCV 91
           PASG  +     +K IR  R GC+NRPFYHIVV+                          
Sbjct: 5   PASGIGRFYAKSAKIIRFVRLGCSNRPFYHIVVME------------------------- 39

Query: 92  NVKSSEHSVGLAHIDKKWSSKITRMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRY 150
                                  R +   QP IEQ+G+FDPLPN+Y E+LV+LN ERIRY
Sbjct: 40  -----------------------RRKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRY 76

Query: 151 WLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWL 186
           WLG    H+++P  EL G     +  L  + P  ++
Sbjct: 77  WLGKGA-HLSTPAAELLG-----IAGLLPIHPRTYM 106

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
FB|FBgn0033907	129	mRpS16 "mitochondrial ribosoma	0.267	0.410	0.581	6e-22
WB|WBGene00018961	147	mrps-16 [Caenorhabditis elegan	0.318	0.428	0.463	1.7e-18
UNIPROTKB|J9NS54	199	MRPS16 "Uncharacterized protei	0.252	0.251	0.509	3.4e-18
UNIPROTKB|P82915	135	MRPS16 "28S ribosomal protein	0.252	0.370	0.490	7e-18
UNIPROTKB|F1SU70	135	LOC100739849 "Uncharacterized	0.252	0.370	0.509	7e-18
UNIPROTKB|A6ND22	99	MRPS16 "28S ribosomal protein	0.252	0.505	0.490	8.9e-18
UNIPROTKB|Q9Y3D3	137	MRPS16 "28S ribosomal protein	0.252	0.364	0.490	8.9e-18
MGI|MGI:1913492	135	Mrps16 "mitochondrial ribosoma	0.252	0.370	0.490	8.9e-18
RGD|1582995	135	Mrps16 "mitochondrial ribosoma	0.252	0.370	0.470	6e-17
UNIPROTKB|E1C907	136	MRPS16 "Uncharacterized protei	0.272	0.397	0.418	4.5e-15

FB|FBgn0033907 mRpS16 "mitochondrial ribosomal protein S16" [Drosophila melanogaster (taxid:7227)]

 Score = 169 (64.5 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query:   115 RMRRNDQP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
             R +   QP IEQ+G+FDPLPN+Y E+LV+LN ERIRYWLG    H+++P  EL G
Sbjct:    40 RRKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRYWLGKG-AHLSTPAAELLG 93

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS;NAS

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS

WB|WBGene00018961 mrps-16 [Caenorhabditis elegans (taxid:6239)]

 Score = 157 (60.3 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
 Identities = 32/69 (46%), Positives = 45/69 (65%)

Query:   123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRP 182
             +EQ+GTFDPLPN+  EKLV+LN  R++YW+G  + HI+ PV EL G     L+ L  + P
Sbjct:    47 LEQVGTFDPLPNQKNEKLVALNFGRLKYWIGERNAHISVPVLELLG-----LSGLFPIHP 101

Query:   183 SQWL-ANSN 190
               ++ A  N
Sbjct:   102 KSFIRAKDN 110

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

UNIPROTKB|J9NS54 MRPS16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 149 (57.5 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
 Identities = 26/51 (50%), Positives = 39/51 (76%)

Query:   118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
             R+ + +EQLG++DPLPN + EK+V+LN+ERIR+W+G    H++ PV  L G
Sbjct:   107 RDGRFVEQLGSYDPLPNSHGEKIVALNLERIRHWIGCG-AHLSKPVERLLG 156

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P82915 MRPS16 "28S ribosomal protein S16, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
 Identities = 25/51 (49%), Positives = 40/51 (78%)

Query:   118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
             R+ + +EQLG++DP+PN + EKLV+LN++RIR+W+G    H++ PV +L G
Sbjct:    43 RDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCG-AHLSKPVEKLLG 92

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1SU70 LOC100739849 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
 Identities = 26/51 (50%), Positives = 39/51 (76%)

Query:   118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
             R+ + +EQLG++DPLPN + EKLV+LN +RIR+W+G    H++ PV +L G
Sbjct:    43 RDGRFVEQLGSYDPLPNSHGEKLVALNFDRIRHWIGCG-AHLSKPVEKLLG 92

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|A6ND22 MRPS16 "28S ribosomal protein S16, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 25/51 (49%), Positives = 40/51 (78%)

Query:   118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
             R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    H++ P+ +L G
Sbjct:    43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLG 92

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q9Y3D3 MRPS16 "28S ribosomal protein S16, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 25/51 (49%), Positives = 40/51 (78%)

Query:   118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
             R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    H++ P+ +L G
Sbjct:    43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLG 92

GO:0006412 "translation" evidence=NAS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IDA

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1913492 Mrps16 "mitochondrial ribosomal protein S16" [Mus musculus (taxid:10090)]

 Score = 146 (56.5 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 25/51 (49%), Positives = 40/51 (78%)

Query:   118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
             R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G    H++ P+ +L G
Sbjct:    43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLG 92

GO:0003674 "molecular_function" evidence=ND

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1582995 Mrps16 "mitochondrial ribosomal protein S16" [Rattus norvegicus (taxid:10116)]

 Score = 138 (53.6 bits), Expect = 6.0e-17, Sum P(2) = 6.0e-17
 Identities = 24/51 (47%), Positives = 39/51 (76%)

Query:   118 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
             R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G     ++ P+ +L G
Sbjct:    43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AQLSKPMEKLLG 92

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA;ISO

GO:0006412 "translation" evidence=IEA

UNIPROTKB|E1C907 MRPS16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 126 (49.4 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query:   114 TRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 168
             ++  R+ + +EQLG  DPLPN + EK+  LN+ER+R+WLG     ++ P  +L G
Sbjct:    39 SKRARDGKYLEQLGCLDPLPNAHGEKVAGLNLERLRHWLGCG-AQLSRPAEKLLG 92

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	198
TIGR00002	78	TIGR00002, S16, ribosomal protein S16	4e-16
pfam00886	61	pfam00886, Ribosomal_S16, Ribosomal protein S16	2e-15
PRK00040	75	PRK00040, rpsP, 30S ribosomal protein S16; Reviewe	2e-14
COG0228	87	COG0228, RpsP, Ribosomal protein S16 [Translation,	1e-11
CHL00005	82	CHL00005, rps16, ribosomal protein S16	3e-05
PRK14520	155	PRK14520, rpsP, 30S ribosomal protein S16; Provisi	5e-04
PRK14525	88	PRK14525, rpsP, 30S ribosomal protein S16; Provisi	0.002
PRK14521	186	PRK14521, rpsP, 30S ribosomal protein S16; Provisi	0.002

>gnl|CDD|129114 TIGR00002, S16, ribosomal protein S16

 Score = 69.6 bits (171), Expect = 4e-16
 Identities = 37/123 (30%), Positives = 44/123 (35%), Gaps = 51/123 (41%)

Query: 47  IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
           IRL R G   RPFY IVV  S                                       
Sbjct: 3   IRLKRGGRKKRPFYRIVVADS--------------------------------------- 23

Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVREL 166
                   R RR+ + IE+LG ++PL     E  V LN+ERI+YWL       T  VR L
Sbjct: 24  --------RSRRDGRYIEELGFYNPLTK---ESRVKLNVERIKYWLSKG-AQPTDTVRNL 71

Query: 167 FGK 169
             K
Sbjct: 72  LKK 74

This model describes ribosomal S16 of bacteria and organelles [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 78

>gnl|CDD|216173 pfam00886, Ribosomal_S16, Ribosomal protein S16

 Score = 67.1 bits (165), Expect = 2e-15
 Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 48/103 (46%)

Query: 51  RYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWS 110
           R G   RPFY IVV  S                                           
Sbjct: 1   RGGRKKRPFYRIVVADS------------------------------------------- 17

Query: 111 SKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
               R  R+ + IE+LGT++P+    QE  V L+ ERI+YWLG
Sbjct: 18  ----RSPRDGRFIEELGTYNPIAKP-QEPEVKLDEERIKYWLG 55

Length = 61

>gnl|CDD|234588 PRK00040, rpsP, 30S ribosomal protein S16; Reviewed

 Score = 64.8 bits (159), Expect = 2e-14
 Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 48/107 (44%)

Query: 47  IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
           IRLAR G   RPFY IVV  S                                       
Sbjct: 4   IRLARGGAKKRPFYRIVVADS--------------------------------------- 24

Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
                   R  R+ + IE++G ++PL     E+ V L+ ER+ YWLG
Sbjct: 25  --------RSPRDGRFIERVGFYNPLAKP-AEEEVKLDEERVLYWLG 62

Length = 75

>gnl|CDD|223306 COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 32/107 (29%), Positives = 40/107 (37%), Gaps = 49/107 (45%)

Query: 47  IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
           IRLAR G   RPFY IVV  S                                       
Sbjct: 4   IRLARGGSKKRPFYRIVVADS--------------------------------------- 24

Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
                   R  R+ + IE+LGT++PL  +  E+ V L+ ERI YWL 
Sbjct: 25  --------RSPRDGRFIERLGTYNPLLGK--EERVKLDEERILYWLS 61

Length = 87

>gnl|CDD|176950 CHL00005, rps16, ribosomal protein S16

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 23/110 (20%), Positives = 34/110 (30%), Gaps = 53/110 (48%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           M K +RL R G   +  Y IV I                                     
Sbjct: 1   MVK-LRLKRCGRKQQAVYRIVAIDV----------------------------------- 24

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 152
                       R RR  + +E++G +DP+ N+       LN+  I Y+L
Sbjct: 25  ------------RSRREGRDLEKVGFYDPIKNQTY-----LNVPAILYFL 57

Length = 82

>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 50/111 (45%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           M+  I+L R G    P Y IVV  S                                   
Sbjct: 1   MAVKIKLKRLGKIRNPQYRIVVADS----------------------------------- 25

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
                       R +R+ + IE++G + P   + +  L+ ++ ER +YWL 
Sbjct: 26  ------------RTKRDGRAIEEIGRYHP---KEEPSLIEIDSERAQYWLS 61

Length = 155

>gnl|CDD|172991 PRK14525, rpsP, 30S ribosomal protein S16; Provisional

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 50/112 (44%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           M+  +RL+R G    PFYH+V   S                                   
Sbjct: 1   MAVVLRLSRAGTHKAPFYHVVATDS----------------------------------- 25

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGT 154
                       R  R+ + +E +G +DP   +  E+ + L +ERI +WL  
Sbjct: 26  ------------RNARDGKYLEDVGIYDP--TKRPER-IELKVERIEHWLKA 62

Length = 88

>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 50/112 (44%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           M+  IRL R+G   + FY IV   S                                   
Sbjct: 1   MAVKIRLQRHGRKGKAFYWIVAADS----------------------------------- 25

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGT 154
                       R  R+ + IE++GT++P  N      V LN +R  YWL  
Sbjct: 26  ------------RAPRDGKFIEKIGTYNPNTNPAT---VDLNFDRAVYWLMN 62

Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG3419|consensus	112		100.0
PRK14525	88	rpsP 30S ribosomal protein S16; Provisional	100.0
TIGR00002	78	S16 ribosomal protein S16. This model describes ri	100.0
CHL00005	82	rps16 ribosomal protein S16	100.0
PRK14524	94	rpsP 30S ribosomal protein S16; Provisional	100.0
PRK00040	75	rpsP 30S ribosomal protein S16; Reviewed	100.0
PRK14520	155	rpsP 30S ribosomal protein S16; Provisional	100.0
PRK14522	116	rpsP 30S ribosomal protein S16; Provisional	100.0
PRK14521	186	rpsP 30S ribosomal protein S16; Provisional	99.98
PRK14523	137	rpsP 30S ribosomal protein S16; Provisional	99.98
COG0228	87	RpsP Ribosomal protein S16 [Translation, ribosomal	99.97
PF00886	62	Ribosomal_S16: Ribosomal protein S16; InterPro: IP	99.94

>KOG3419|consensus

Probab=100.00  E-value=3.6e-40  Score=257.88  Aligned_cols=94  Identities=54%  Similarity=0.999  Sum_probs=90.6

Q ss_pred             ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684         43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP  122 (198)
Q Consensus        43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~  122 (198)
                      |.++|||||+||||||||||||+++                                               |.+|+|++
T Consensus         1 ~~vkIRLar~GcknRPfY~Ivva~~-----------------------------------------------r~~rdgk~   33 (112)
T KOG3419|consen    1 MVVKIRLARFGCKNRPFYRIVVADS-----------------------------------------------RKRRDGKP   33 (112)
T ss_pred             CeEEEeehhcCccCCCeeEEEEeec-----------------------------------------------cccccCCc
Confidence            6789999999999999999999999                                               89999999


Q ss_pred             ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCccCCcccCCCcccccCC
Q psy11684        123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQWLANS  189 (198)
Q Consensus       123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~~~l~~~~P~~~~~~~  189 (198)
                      |||||+|||+||.+++++|.||.+||+||||+| ||||+||.+||++     +|++|++|..++.+.
T Consensus        34 iE~lG~ydPlp~~~~~~~v~Ln~dRikyWl~~G-AqpS~tv~~Ll~~-----aGl~p~~p~~~~~a~   94 (112)
T KOG3419|consen   34 IEQLGTYDPLPNQDNEKLVALNFDRIKYWLGVG-AQPSDTVEELLGK-----AGLFPIHPMTFMNAK   94 (112)
T ss_pred             hhheecccCCCCCCCCcceeecHHHHHHHHhcC-CccChHHHHHHHh-----cCCCCCchhhhhccc
Confidence            999999999999999999999999999999999 9999999999999     999999999987653

>PRK14525 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=1.9e-35  Score=221.39  Aligned_cols=80  Identities=30%  Similarity=0.582  Sum_probs=75.9

Q ss_pred             ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684         43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP  122 (198)
Q Consensus        43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~  122 (198)
                      |+|+|||+|+||+|+|||||||+|+                                               |.+|||++
T Consensus         1 M~VkIRL~R~G~k~~P~YrIVv~ds-----------------------------------------------r~~RdGk~   33 (88)
T PRK14525          1 MAVVLRLSRAGTHKAPFYHVVATDS-----------------------------------------------RNARDGKY   33 (88)
T ss_pred             CcEEEehhhCCCCCCCeEEEEEeec-----------------------------------------------CCCCCCCc
Confidence            8999999999999999999999999                                               99999999


Q ss_pred             ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCc
Q psy11684        123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNID  173 (198)
Q Consensus       123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~  173 (198)
                      ||+||+|||+.++   +.+.||.|||+|||++| ||||++|..||++.|+.
T Consensus        34 IE~lG~YnP~~~~---~~i~ln~eri~~WL~~G-AqpT~tV~~Ll~~~g~~   80 (88)
T PRK14525         34 LEDVGIYDPTKRP---ERIELKVERIEHWLKAG-AKPSQTVAMILKRAAKA   80 (88)
T ss_pred             eeEEecccCCCCC---ceEEEcHHHHHHHHHCC-CccCHHHHHHHHHcCcc
Confidence            9999999999753   57999999999999999 99999999999997665

>TIGR00002 S16 ribosomal protein S16

Probab=100.00  E-value=1.5e-34  Score=211.69  Aligned_cols=77  Identities=48%  Similarity=0.805  Sum_probs=73.0

Q ss_pred             eEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccce
Q psy11684         45 KSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPIE  124 (198)
Q Consensus        45 v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~IE  124 (198)
                      |+|||+|+||+|+|||+|||+|+                                               |.+|||++||
T Consensus         1 vkIRL~R~G~k~~PfYrIVv~d~-----------------------------------------------r~~RdGk~iE   33 (78)
T TIGR00002         1 VKIRLKRGGRKKRPFYRIVVADS-----------------------------------------------RSRRDGRYIE   33 (78)
T ss_pred             CEEecccCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCcee
Confidence            68999999999999999999999                                               9999999999


Q ss_pred             ecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCC
Q psy11684        125 QLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI  172 (198)
Q Consensus       125 ~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I  172 (198)
                      +||+|||++++   +.+.||.||++|||+.| ||||++|.+||++.|+
T Consensus        34 ~lG~YnP~~~~---~~i~l~~~ri~~Wl~~G-Aqps~tV~~Ll~~~g~   77 (78)
T TIGR00002        34 ELGFYNPLTKE---SRVKLNVERIKYWLSKG-AQPTDTVRNLLKKAGV   77 (78)
T ss_pred             EeeeccCCCCC---cEEEEcHHHHHHHHHCC-CccCHHHHHHHHHccC
Confidence            99999999864   58999999999999999 9999999999999654

This model describes ribosomal S16 of bacteria and organelles.

>CHL00005 rps16 ribosomal protein S16

Probab=100.00  E-value=3e-34  Score=212.46  Aligned_cols=76  Identities=32%  Similarity=0.579  Sum_probs=71.8

Q ss_pred             eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684         44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI  123 (198)
Q Consensus        44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I  123 (198)
                      +|+|||+|+||+|+|||||||+|+                                               |.+|||++|
T Consensus         1 ~vkIRL~R~G~kk~P~YrIVvads-----------------------------------------------r~~RdGk~i   33 (82)
T CHL00005          1 MVKLRLKRCGRKQQAVYRIVAIDV-----------------------------------------------RSRREGRDL   33 (82)
T ss_pred             CeEEecccCCCCCCCeEEEEEEeC-----------------------------------------------CCCCCCcce
Confidence            489999999999999999999999                                               999999999


Q ss_pred             eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCC
Q psy11684        124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI  172 (198)
Q Consensus       124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I  172 (198)
                      |+||+|||++++     +.||.||++|||++| ||||++|.+||++.|+
T Consensus        34 E~lG~YnP~~~~-----~~ln~eri~~Wl~~G-Aqpt~tV~~Ll~~~g~   76 (82)
T CHL00005         34 EKVGFYDPIKNQ-----TYLNVPAILYFLEKG-AQPTETVYDILKKAEV   76 (82)
T ss_pred             eEeeeccCCCcc-----cEEeHHHHHHHHHCc-CccCHHHHHHHHHcCc
Confidence            999999999753     699999999999999 9999999999999664

>PRK14524 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=3.5e-34  Score=216.41  Aligned_cols=78  Identities=35%  Similarity=0.647  Sum_probs=73.9

Q ss_pred             eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684         44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI  123 (198)
Q Consensus        44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I  123 (198)
                      +|+|||+|+||+|+|||||||+|+                                               |.+|||++|
T Consensus         1 mVkIRL~R~G~KkrPfYrIVvads-----------------------------------------------r~~RdGk~i   33 (94)
T PRK14524          1 MVRIRLTRMGKRKQPFYRIVVVDS-----------------------------------------------RKRRDGAYI   33 (94)
T ss_pred             CcEEhhccCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCce
Confidence            489999999999999999999999                                               999999999


Q ss_pred             eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCC
Q psy11684        124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI  172 (198)
Q Consensus       124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I  172 (198)
                      |+||+|||++++   ..+.||.||++|||++| ||||++|..||++.|+
T Consensus        34 E~lG~YnP~~~~---~~i~l~~eri~~Wl~~G-AqpT~tV~~Llkk~g~   78 (94)
T PRK14524         34 ESLGYYNPLKEP---YEIKVDVERAVEWILKG-AQPSDTVRDILRKFGV   78 (94)
T ss_pred             eEeeecCCCCCC---ceEEEcHHHHHHHHHcC-CccCHHHHHHHHHccc
Confidence            999999999764   47999999999999999 9999999999999665

>PRK00040 rpsP 30S ribosomal protein S16; Reviewed

Probab=100.00  E-value=3.1e-34  Score=208.74  Aligned_cols=75  Identities=45%  Similarity=0.753  Sum_probs=71.1

Q ss_pred             eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684         44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI  123 (198)
Q Consensus        44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I  123 (198)
                      +|+|||+|+||+|+|||||||+|+                                               |++|||++|
T Consensus         1 ~vkIRL~R~G~k~~P~YrIVv~d~-----------------------------------------------r~~RdGk~i   33 (75)
T PRK00040          1 MVKIRLARGGAKKRPFYRIVVADS-----------------------------------------------RSPRDGRFI   33 (75)
T ss_pred             CeEEhhhhCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCce
Confidence            489999999999999999999999                                               999999999


Q ss_pred             eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHH
Q psy11684        124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELF  167 (198)
Q Consensus       124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll  167 (198)
                      |+||+|||++++ +++.+.||.|||+|||++| ||||++|.+||
T Consensus        34 E~lG~ydP~~~~-~~~~i~ln~eri~~Wl~~G-Aqpt~~V~~Ll   75 (75)
T PRK00040         34 ERVGFYNPLAKP-AEEEVKLDEERVLYWLGQG-AQPTDTVRRLL   75 (75)
T ss_pred             eEEeecCCCCCC-CcceEEEcHHHHHHHHHCC-CccCHHHHHhC
Confidence            999999999865 4679999999999999999 99999999986

>PRK14520 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=1.2e-33  Score=229.80  Aligned_cols=79  Identities=34%  Similarity=0.622  Sum_probs=75.6

Q ss_pred             ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684         43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP  122 (198)
Q Consensus        43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~  122 (198)
                      |+|+|||+|+||+|+|||||||+|+                                               |++|||++
T Consensus         1 MaVkIRL~R~G~kk~PfYrIVVaDs-----------------------------------------------R~~RDGk~   33 (155)
T PRK14520          1 MAVKIKLKRLGKIRNPQYRIVVADS-----------------------------------------------RTKRDGRA   33 (155)
T ss_pred             CcEEehhhhCCCCCCCeEEEEEeec-----------------------------------------------CCCCCCCc
Confidence            8999999999999999999999999                                               99999999


Q ss_pred             ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCC
Q psy11684        123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI  172 (198)
Q Consensus       123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I  172 (198)
                      ||+||+|||++++   ..|.||.||++|||++| ||||++|..||++.|+
T Consensus        34 IE~lG~YnP~~~~---~~i~ln~eRi~yWL~~G-AQPT~~V~~LLk~~g~   79 (155)
T PRK14520         34 IEEIGRYHPKEEP---SLIEIDSERAQYWLSVG-AQPTEPVLALLKITGD   79 (155)
T ss_pred             eeeeeccCCCCCC---ceEEEcHHHHHHHHHCC-CccCHHHHHHHHHcch
Confidence            9999999998764   58999999999999999 9999999999999775

>PRK14522 rpsP 30S ribosomal protein S16; Provisional

Probab=100.00  E-value=1.9e-33  Score=220.64  Aligned_cols=75  Identities=32%  Similarity=0.514  Sum_probs=72.5

Q ss_pred             ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684         43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP  122 (198)
Q Consensus        43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~  122 (198)
                      |+|+|||+|+||+|+|||||||+|+                                               |.+|||++
T Consensus         1 MmVkIRLaR~G~KkrPfYrIVVaDs-----------------------------------------------R~~RDGk~   33 (116)
T PRK14522          1 MALKIRLRQQGRRNHVVYRLVLADV-----------------------------------------------ESPRDGKY   33 (116)
T ss_pred             CcEEEecccCCCCCCCeEEEEEeec-----------------------------------------------CCCCCCCc
Confidence            8999999999999999999999999                                               99999999


Q ss_pred             ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhc
Q psy11684        123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGK  169 (198)
Q Consensus       123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k  169 (198)
                      ||+||+|||+.++    .|.||.|||+|||+.| ||||++|..||++
T Consensus        34 IE~lG~YdP~~~~----~v~Ln~eRi~yWL~~G-AqPS~tV~~LLkk   75 (116)
T PRK14522         34 IELLGWYDPHSEQ----NYQLKSERIFYWLNQG-AELTEKAGALVKQ   75 (116)
T ss_pred             ceeeeccCCCCCC----ceEECHHHHHHHHHCC-CccCHHHHHHHHh
Confidence            9999999998753    6999999999999999 9999999999998

>PRK14521 rpsP 30S ribosomal protein S16; Provisional

Probab=99.98  E-value=5.2e-33  Score=231.28  Aligned_cols=80  Identities=35%  Similarity=0.582  Sum_probs=75.5

Q ss_pred             ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684         43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP  122 (198)
Q Consensus        43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~  122 (198)
                      |+|+|||+|+||+++|||||||+|+                                               |++|||++
T Consensus         1 M~VkIRL~R~G~KkrPfYrIVVaDs-----------------------------------------------R~~RDGk~   33 (186)
T PRK14521          1 MAVKIRLQRHGRKGKAFYWIVAADS-----------------------------------------------RAPRDGKF   33 (186)
T ss_pred             CcEeehhhhCCCCCCCeEEEEEEeC-----------------------------------------------CCCCCCCc
Confidence            8999999999999999999999999                                               99999999


Q ss_pred             ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCc
Q psy11684        123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNID  173 (198)
Q Consensus       123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~  173 (198)
                      ||+||+|||++++   ..|.||++||+|||++| ||||++|+.||++.|+-
T Consensus        34 IE~lG~YnP~~~~---~~i~Ln~eRi~~WL~~G-AqPTdtV~~lL~~~g~~   80 (186)
T PRK14521         34 IEKIGTYNPNTNP---ATVDLNFDRAVYWLMNG-AQPTDTARNILSYEGVL   80 (186)
T ss_pred             eeeeeecCCCCCC---ceEEEcHHHHHHHHHCC-CcCCHHHHHHHHHcccc
Confidence            9999999999765   58999999999999999 99999999999995443

>PRK14523 rpsP 30S ribosomal protein S16; Provisional

Probab=99.98  E-value=9.5e-33  Score=221.62  Aligned_cols=82  Identities=35%  Similarity=0.577  Sum_probs=76.4

Q ss_pred             eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684         44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI  123 (198)
Q Consensus        44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I  123 (198)
                      +|+|||+|+||+|+|||||||+|+                                               |++|||++|
T Consensus         1 mVkIRL~R~GrKkrPfYRIVVaDs-----------------------------------------------Rs~RDGK~I   33 (137)
T PRK14523          1 MVVIRLARGGSKKNPFYHIVVADR-----------------------------------------------RKPRDGRFI   33 (137)
T ss_pred             CcEehhhcCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCce
Confidence            489999999999999999999999                                               999999999


Q ss_pred             eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCcc
Q psy11684        124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDL  174 (198)
Q Consensus       124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~  174 (198)
                      |+||+|||++++. ++.|.||++||+|||++| ||||++|..||++.|+..
T Consensus        34 E~LG~YdP~~~~~-~~~i~Ln~eRi~yWL~~G-AQPS~tV~~LLkkag~~~   82 (137)
T PRK14523         34 ERVGYYNPMARGQ-DIRLQLEKERISHWLNQG-AQTSLRVKHLIKKLEKSP   82 (137)
T ss_pred             eeeeecCCCCCCC-CceEEECHHHHHHHHHCC-CccCHHHHHHHHHcccch
Confidence            9999999998765 358999999999999999 999999999999976554

>COG0228 RpsP Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=3.2e-32  Score=205.24  Aligned_cols=78  Identities=46%  Similarity=0.711  Sum_probs=73.8

Q ss_pred             eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684         44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI  123 (198)
Q Consensus        44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I  123 (198)
                      +|+|||+|+|.+++|||+|||+||                                               |.+|||++|
T Consensus         1 ~vkIRL~R~G~kk~P~YrIVVaDs-----------------------------------------------rs~RDGr~I   33 (87)
T COG0228           1 MVKIRLARGGSKKRPFYRIVVADS-----------------------------------------------RSPRDGRFI   33 (87)
T ss_pred             CeEEehhhCCCccCCeEEEEEecc-----------------------------------------------CCCCCCcch
Confidence            489999999999999999999999                                               999999999


Q ss_pred             eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccC
Q psy11684        124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLN  171 (198)
Q Consensus       124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~  171 (198)
                      |.||+|||+.  ..+..|.||.|||.|||++| |||||+|+.||.+.|
T Consensus        34 E~lG~ynP~~--~~~~~v~l~~eri~~Wl~~G-AqpSdtV~~ll~~~g   78 (87)
T COG0228          34 ERLGTYNPLL--GKEERVKLDEERILYWLSQG-AQPSDTVRRLLKKAG   78 (87)
T ss_pred             hhhcccCCCC--CccceEEEcHHHHHHHHHcC-CcccHHHHHHHHHhh
Confidence            9999999977  44668999999999999999 999999999999965

>PF00886 Ribosomal_S16: Ribosomal protein S16; InterPro: IPR000307 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.94  E-value=5.1e-28  Score=169.51  Aligned_cols=62  Identities=50%  Similarity=0.883  Sum_probs=60.3

Q ss_pred             ccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccceecceec
Q psy11684         51 RYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPIEQLGTFD  130 (198)
Q Consensus        51 R~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~IE~LGtyD  130 (198)
                      |+||+|+|||||||+|+                                               |++|||++||+||+||
T Consensus         1 R~G~k~~P~YrIVv~d~-----------------------------------------------r~~RdGk~iE~lG~Yd   33 (62)
T PF00886_consen    1 RMGRKKRPFYRIVVADS-----------------------------------------------RSPRDGKFIEELGFYD   33 (62)
T ss_dssp             EESSTTEEEEEEEEEET-----------------------------------------------TSSTTSSESEEEEEEE
T ss_pred             CCCCCCCCeEEEEEEeC-----------------------------------------------CcccccchhhccceEc
Confidence            78999999999999999                                               9999999999999999


Q ss_pred             CCCCCCCcceEEEeHHHHHHHHhCCCcccC
Q psy11684        131 PLPNEYQEKLVSLNIERIRYWLGTSDIHIT  160 (198)
Q Consensus       131 Plpn~~~eK~v~LnieRiryWLg~G~A~pT  160 (198)
                      |++++..++.+.||+|||+|||++| ||||
T Consensus        34 P~~~~~~~~~~~l~~eri~~Wl~~G-AqpT   62 (62)
T PF00886_consen   34 PIPNPDEEKQIKLNFERIKYWLSKG-AQPT   62 (62)
T ss_dssp             TTSSSSSSTSEEETHHHHHHHHHTT-EEEE
T ss_pred             CCCCCCCceeEEeCHHHHHHHHHcC-cCCC
Confidence            9999888899999999999999999 9997

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S16 is one of the proteins from the small ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [], groups: Eubacterial S16. Algal and plant chloroplast S16. Cyanelle S16. Neurospora crassa mitochondrial S24 (cyt-21). S16 proteins have about 100 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2Y14_P 3UZ6_S 2J02_P 1HNZ_P 3V26_P 3KNL_P 1N34_P 2J00_P 1HNW_P 3OHC_P ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	198
1p6g_P	82	Real Space Refined Coordinates Of The 30s Subunit F		5e-04
3fih_P	80	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		7e-04
2gy9_P	78	Structure Of The 30s Subunit Of A Pre-Translocation		9e-04

>pdb|1P6G|P Chain P, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 82

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 49/126 (38%)
Query: 46  SIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHI 105
           +IRLAR+G   RPFY +VV  S                                      
Sbjct: 3   TIRLARHGAKKRPFYQVVVADS-------------------------------------- 24
Query: 106 DKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRE 165
                    R  RN + IE++G F+P+ +E +E    L+++RI +W+G     I+  V  
Sbjct: 25  ---------RNARNGRFIERVGFFNPIASEKEEG-TRLDLDRIAHWVGQGAT-ISDRVAA 73
Query: 166 LFGKLN 171
           L  ++N
Sbjct: 74  LIKEVN 79

>pdb|3FIH|P Chain P, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 80

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 49/126 (38%)
Query: 46  SIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHI 105
           +IRLAR+G   RPFY +VV  S                                      
Sbjct: 3   TIRLARHGAKKRPFYQVVVADS-------------------------------------- 24
Query: 106 DKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRE 165
                    R  RN + IE++G F+P+ +E +E    L+++RI +W+G     I+  V  
Sbjct: 25  ---------RNARNGRFIERVGFFNPIASEKEEG-TRLDLDRIAHWVGQGAT-ISDRVAA 73
Query: 166 LFGKLN 171
           L  ++N
Sbjct: 74  LIKEVN 79

>pdb|2GY9|P Chain P, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 78

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 48/108 (44%)
Query: 46  SIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHI 105
           +IRLAR+G   RPFY +VV  S                                      
Sbjct: 3   TIRLARHGAKKRPFYQVVVADS-------------------------------------- 24
Query: 106 DKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 153
                    R  RN + IE++G F+P+ +E +E    L+++RI +W+G
Sbjct: 25  ---------RNARNGRFIERVGFFNPIASEKEEG-TRLDLDRIAHWVG 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
3r8n_P	82	30S ribosomal protein S16; protein biosynthesis, R	2e-14
3bbn_P	88	Ribosomal protein S16; small ribosomal subunit, sp	3e-14
3pys_P	83	30S ribosomal protein S16; ribosome, IGR, IRES, PS	1e-13
3bn0_A	112	30S ribosomal protein S16; ribonucleoprotein, ribo	4e-13

>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 88

 Score = 64.1 bits (157), Expect = 3e-14
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 62/134 (46%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           M K +RL R G   R  Y IV I                                     
Sbjct: 1   MVK-LRLKRCGRKQRAVYRIVAIDV----------------------------------- 24

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGT----SDIH 158
                       R RR  + ++++G +DP+ ++       LN+  I  +L      ++  
Sbjct: 25  ------------RSRREGRDLQKVGFYDPIKSQ-----TYLNVPAILDFLEKGAQPTE-- 65

Query: 159 ITSPVRELFGKLNI 172
               V ++  +  +
Sbjct: 66  ---TVYDILKRAEV 76

>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ... Length = 83

 Score = 62.5 bits (153), Expect = 1e-13
 Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 59/134 (44%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           M K IRLAR+G  + P Y IVV  +                                   
Sbjct: 1   MVK-IRLARFGSKHNPHYRIVVTDA----------------------------------- 24

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGT----SDIH 158
                       R +R+ + IE++G +DP         + +++ER RYWL      +D  
Sbjct: 25  ------------RRKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVGAQPTD-- 68

Query: 159 ITSPVRELFGKLNI 172
                R L  +  +
Sbjct: 69  ---TARRLLRQAGV 79

>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1 Length = 112

 Score = 62.0 bits (151), Expect = 4e-13
 Identities = 23/134 (17%), Positives = 44/134 (32%), Gaps = 60/134 (44%)

Query: 43  MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGL 102
           M+  IRLA++G  + P Y IVV+ +                                   
Sbjct: 1   MAVRIRLAKFGRKHHPIYRIVVMDA----------------------------------- 25

Query: 103 AHIDKKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGT----SDIH 158
                       +  R  + I+ LGT+DP     ++ L+++  E+++ W+      S   
Sbjct: 26  ------------KSPREGKYIDILGTYDPK----RKVLINVYPEKVKEWVLKGVELSH-- 67

Query: 159 ITSPVRELFGKLNI 172
                + +     I
Sbjct: 68  ---RAKAILWNHGI 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
3r8n_P	82	30S ribosomal protein S16; protein biosynthesis, R	100.0
3pys_P	83	30S ribosomal protein S16; ribosome, IGR, IRES, PS	100.0
3bn0_A	112	30S ribosomal protein S16; ribonucleoprotein, ribo	100.0
3bbn_P	88	Ribosomal protein S16; small ribosomal subunit, sp	100.0

>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...

Probab=100.00  E-value=1e-36  Score=224.95  Aligned_cols=80  Identities=34%  Similarity=0.659  Sum_probs=75.1

Q ss_pred             eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684         44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI  123 (198)
Q Consensus        44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I  123 (198)
                      ||+|||+|+||+++|||||||+||                                               |++|||++|
T Consensus         1 MvkIRL~R~G~kkrPfYrIVvads-----------------------------------------------r~~RdGr~I   33 (83)
T 3pys_P            1 MVKIRLARFGSKHNPHYRIVVTDA-----------------------------------------------RRKRDGKYI   33 (83)
T ss_dssp             CEEEECCCCSSTTCCCCCCEEEES-----------------------------------------------SSCTTCCCS
T ss_pred             CcEEeeecCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCce
Confidence            389999999999999999999999                                               999999999


Q ss_pred             eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCc
Q psy11684        124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNID  173 (198)
Q Consensus       124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~  173 (198)
                      |+||+|||++++  ++.|.||.|||+|||++| ||||++|++||++.|+-
T Consensus        34 E~lG~YnP~~~~--~~~i~l~~eri~~Wl~~G-AqptdtV~~ll~~~g~~   80 (83)
T 3pys_P           34 EKIGYYDPRKTT--PDWLKVDVERARYWLSVG-AQPTDTARRLLRQAGVF   80 (83)
T ss_dssp             EECCCBCSSCCS--TTCBCCCHHHHHHHHHTC-CCBCSTTGGGTGGGCSS
T ss_pred             eeeeEEcCCCCC--CceEEEchHHHHHHHHCC-CcCCHHHHHHHHHcCcc
Confidence            999999999964  678999999999999999 99999999999996653

>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1

Probab=100.00  E-value=2.2e-35  Score=228.53  Aligned_cols=82  Identities=26%  Similarity=0.564  Sum_probs=69.8

Q ss_pred             ceeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCcc
Q psy11684         43 MSKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQP  122 (198)
Q Consensus        43 M~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~  122 (198)
                      |+|+|||+|+||+++|||||||+||                                               |++|||++
T Consensus         1 M~VkIRL~R~G~KkrPfYrIVVaDs-----------------------------------------------R~~RDGr~   33 (112)
T 3bn0_A            1 MAVRIRLAKFGRKHHPIYRIVVMDA-----------------------------------------------KSPREGKY   33 (112)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEEC-----------------------------------------------C------C
T ss_pred             CcEEehhhcCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCC
Confidence            8999999999999999999999999                                               99999999


Q ss_pred             ceecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCccCCcccCC
Q psy11684        123 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLR  181 (198)
Q Consensus       123 IE~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~~~l~~~~  181 (198)
                      ||+||+|||+    +++.|.||.|||+|||++| ||||++|++||++     +|+++..
T Consensus        34 IE~lG~YnP~----~~~~v~ld~eri~~WL~~G-AQPTdtV~~LL~~-----ag~~~~~   82 (112)
T 3bn0_A           34 IDILGTYDPK----RKVLINVYPEKVKEWVLKG-VELSHRAKAILWN-----HGILKEV   82 (112)
T ss_dssp             SEEEEEEETT----TTEEEEECHHHHHHHHHTT-CEEEHHHHHHHHH-----TTHHHHH
T ss_pred             EeEeeeccCC----CcceEEEcHHHHHHHHHcC-CccCHHHHHHHHH-----cCCcccc
Confidence            9999999999    3579999999999999999 9999999999999     5555543

>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=1.6e-35  Score=220.70  Aligned_cols=83  Identities=25%  Similarity=0.447  Sum_probs=75.5

Q ss_pred             eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684         44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI  123 (198)
Q Consensus        44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I  123 (198)
                      +|+|||+|+||+++|||||||+||                                               |++|||++|
T Consensus         1 mvkIRL~R~G~KkrPfYrIVvads-----------------------------------------------r~~RDGr~I   33 (88)
T 3bbn_P            1 MVKLRLKRCGRKQRAVYRIVAIDV-----------------------------------------------RSRREGRDL   33 (88)
T ss_dssp             CEEECCCCCSCTTCCCCCCCCEET-----------------------------------------------TSCSSSCCS
T ss_pred             CeEEecccCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCCcE
Confidence            489999999999999999999999                                               999999999


Q ss_pred             eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCccCCcccCCCcc
Q psy11684        124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCDLRPSQ  184 (198)
Q Consensus       124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~~~l~~~~P~~  184 (198)
                      |+||+|||++++     +.||.|||+|||++| ||||++|++||++     +|+++..+..
T Consensus        34 E~lG~YnP~~~~-----~~l~~eri~~Wl~~G-AqpTdtV~~ll~~-----~g~~~~~~~~   83 (88)
T 3bbn_P           34 QKVGFYDPIKSQ-----TYLNVPAILDFLEKG-AQPTETVYDILKR-----AEVFKEFRLN   83 (88)
T ss_dssp             SCCCCBCTTSSC-----BCCCTTTSSSSTTSS-CEECTTTSSSSTT-----TTSSSCC---
T ss_pred             eEEEeccCCCCc-----eEEcHHHHHHHHHcC-CccCHHHHHHHHH-----cCCccccccc
Confidence            999999999875     689999999999999 9999999999999     6777776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d2gy9p1	78	d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherich	8e-16
d2uubp1	83	d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus t	1e-15
d3bn0a1	101	d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex	6e-12

>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]} Length = 78

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]

 Score = 67.0 bits (164), Expect = 8e-16
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 49/124 (39%)

Query: 47  IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
           IRLAR+G   RPFY +VV  S                                       
Sbjct: 4   IRLARHGAKKRPFYQVVVADS--------------------------------------- 24

Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVREL 166
                   R  RN + IE++G F+P+ +E +E+   L+++RI +W+G     I+  V  L
Sbjct: 25  --------RNARNGRFIERVGFFNPIASE-KEEGTRLDLDRIAHWVGQG-ATISDRVAAL 74

Query: 167 FGKL 170
             ++
Sbjct: 75  IKEV 78

>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]} Length = 83

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]

 Score = 66.6 bits (163), Expect = 1e-15
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 50/126 (39%)

Query: 47  IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
           IRLAR+G  + P Y IVV  +                                       
Sbjct: 4   IRLARFGSKHNPHYRIVVTDA--------------------------------------- 24

Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVREL 166
                   R +R+ + IE++G +DP         + +++ER RYWL       T   R L
Sbjct: 25  --------RRKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVG-AQPTDTARRL 73

Query: 167 FGKLNI 172
             +  +
Sbjct: 74  LRQAGV 79

>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]

 Score = 57.5 bits (139), Expect = 6e-12
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 52/126 (41%)

Query: 47  IRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHID 106
           IRLA++G  + P Y IVV+ +                                       
Sbjct: 4   IRLAKFGRKHHPIYRIVVMDA--------------------------------------- 24

Query: 107 KKWSSKITRMRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVREL 166
                   +  R  + I+ LGT+DP           +  E+++ W+    + ++   + +
Sbjct: 25  --------KSPREGKYIDILGTYDPKRKVLIN----VYPEKVKEWVLKG-VELSHRAKAI 71

Query: 167 FGKLNI 172
                I
Sbjct: 72  LWNHGI 77

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2gy9p1	78	Ribosomal protein S16 {Escherichia coli [TaxId: 56	100.0
d2uubp1	83	Ribosomal protein S16 {Thermus thermophilus [TaxId	100.0
d3bn0a1	101	Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63	99.97

>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.2e-36  Score=215.85  Aligned_cols=78  Identities=40%  Similarity=0.702  Sum_probs=73.9

Q ss_pred             eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684         44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI  123 (198)
Q Consensus        44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I  123 (198)
                      |++|||+|+||+|+|||||||+|+                                               |++|||++|
T Consensus         1 MvkIRL~r~G~k~~P~YrIVv~d~-----------------------------------------------r~~rdgk~i   33 (78)
T d2gy9p1           1 MVTIRLARHGAKKRPFYQVVVADS-----------------------------------------------RNARNGRFI   33 (78)
T ss_dssp             CEEEEEEECCBTTBCCEEEEEEET-----------------------------------------------TSCTTSCCS
T ss_pred             CeEEecccCCCCCCCeEEEEEeec-----------------------------------------------CCCCCCcce
Confidence            488999999999999999999999                                               999999999


Q ss_pred             eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhcc
Q psy11684        124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKL  170 (198)
Q Consensus       124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~  170 (198)
                      |+||+|||++++. ++.+.||.|||+|||++| ||||++|..||+++
T Consensus        34 E~lG~YnP~~~~~-~~~i~l~~eri~~Wl~~G-Aqps~~V~~LLkk~   78 (78)
T d2gy9p1          34 ERVGFFNPIASEK-EEGTRLDLDRIAHWVGQG-ATISDRVAALIKEV   78 (78)
T ss_dssp             EECCEECSSCCSC-SCCEECCHHHHHHHTTTT-CEECHHHHHHHHHC
T ss_pred             eeeeeECCcCCCC-ccceEecHHHHHHHHHCc-CcCCHHHHHHHhhC
Confidence            9999999999875 567999999999999999 99999999999873

>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.9e-35  Score=214.40  Aligned_cols=79  Identities=34%  Similarity=0.687  Sum_probs=73.7

Q ss_pred             eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684         44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI  123 (198)
Q Consensus        44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I  123 (198)
                      ||+|||+|+|++|+|||||||+|+                                               |++|||++|
T Consensus         1 MvkIRL~R~G~k~~P~yrIVv~d~-----------------------------------------------r~~rdGk~I   33 (83)
T d2uubp1           1 MVKIRLARFGSKHNPHYRIVVTDA-----------------------------------------------RRKRDGKYI   33 (83)
T ss_dssp             CEEEEEEECSBTTBCCEEEEEEET-----------------------------------------------TSCTTSCCS
T ss_pred             CeEEecccCCCCCCCeEEEEEEec-----------------------------------------------CCCCCCcce
Confidence            489999999999999999999999                                               999999999


Q ss_pred             eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCC
Q psy11684        124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNI  172 (198)
Q Consensus       124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I  172 (198)
                      |+||+|||+++  +++.+.||.|||+|||++| ||||++|..||++.||
T Consensus        34 E~lG~YnP~~~--~~~~i~l~~eRi~~Wl~~G-AqpS~tV~~ll~~~gi   79 (83)
T d2uubp1          34 EKIGYYDPRKT--TPDWLKVDVERARYWLSVG-AQPTDTARRLLRQAGV   79 (83)
T ss_dssp             EEEEEECTTCC--SSCCEEECHHHHHHHHHHT-CEECHHHHHHHHHTTS
T ss_pred             eeeeEECCCCC--CCceEEECHHHHHHHHHCC-CCCCHHHHHHHHHcCC
Confidence            99999999865  3578999999999999999 9999999999999544

>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S16
superfamily: Ribosomal protein S16
family: Ribosomal protein S16
domain: Ribosomal protein S16
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=2.2e-33  Score=210.16  Aligned_cols=83  Identities=25%  Similarity=0.580  Sum_probs=69.1

Q ss_pred             eeEEEeeccCCCCCCeeEEEEeccCcccccchhccccccchhhheeeccccCCcccccceecccccccccccCCCCCccc
Q psy11684         44 SKSIRLARYGCTNRPFYHIVVIHSSEHSVGLAHIDKKWSSKLYVRRCVNVKSSEHSVGLAHIDKKWSSKITRMRRNDQPI  123 (198)
Q Consensus        44 ~v~IRLaR~G~~nrPfY~IVV~~s~~h~~~~~~~~~~~~~k~y~~~~~n~~~~~~~~g~~~v~~~~~s~~~R~~R~gk~I  123 (198)
                      +|+|||+|+||+|+|||||||+|+                                               |++|||++|
T Consensus         1 AvkIRL~r~G~k~~p~yrIVv~d~-----------------------------------------------r~~rdGk~i   33 (101)
T d3bn0a1           1 AVRIRLAKFGRKHHPIYRIVVMDA-----------------------------------------------KSPREGKYI   33 (101)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEC-----------------------------------------------C------CS
T ss_pred             CeEEecccCCCCCCCeeEEEEeec-----------------------------------------------CCCCCCcce
Confidence            489999999999999999999999                                               999999999


Q ss_pred             eecceecCCCCCCCcceEEEeHHHHHHHHhCCCcccCHHHHHHHhccCCccCCccc-CCCc
Q psy11684        124 EQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGKLNIDLTNLCD-LRPS  183 (198)
Q Consensus       124 E~LGtyDPlpn~~~eK~v~LnieRiryWLg~G~A~pT~~V~~Ll~k~~I~~~~l~~-~~P~  183 (198)
                      |+||+|||..    ++.|.||.|||+|||++| ||||++|..||++     +|+++ ..|.
T Consensus        34 E~lG~ynP~~----~~~i~l~~eri~~Wl~~G-AqpS~tV~~lL~~-----~g~~~~~~~~   84 (101)
T d3bn0a1          34 DILGTYDPKR----KVLINVYPEKVKEWVLKG-VELSHRAKAILWN-----HGILKEVVPE   84 (101)
T ss_dssp             EEEEEEETTT----TEEEEECHHHHHHHHHTT-CEEEHHHHHHHHH-----TTHHHHHCCT
T ss_pred             eeeeEECCCC----cccccccHHHHHHHHHcC-CCcCHHHHHHHHH-----cCCccccccc
Confidence            9999999963    357999999999999999 9999999999999     56665 3443